BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039464
         (192 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From
           Lactobacillus Acidophilus Ncfm
          Length = 549

 Score = 30.0 bits (66), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 17/121 (14%)

Query: 46  LGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALSA----------------AL 89
           +G  P   +R + P L P+L   N   +G+   ++  E  +A                ++
Sbjct: 205 IGKDPDKNIRENGPMLHPYLQEMNKATFGKRDVMTVGETWNATPKIAEEYSDPDRHELSM 264

Query: 90  IICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWLSQQSRVPKVP 149
           +   E ++ +   GK KW    L L  EL K   K +   D     N    +   +P+V 
Sbjct: 265 VFQFENQSLDQQPGKEKWDLKPLDLG-ELKKVLVKWQTKIDFDHAWNSLFWENHDIPRVI 323

Query: 150 S 150
           S
Sbjct: 324 S 324


>pdb|3I83|A Chain A, Crystal Structure Of 2-dehydropantoate 2-reductase From
          Methylococcus Capsulatus
 pdb|3I83|B Chain B, Crystal Structure Of 2-dehydropantoate 2-reductase From
          Methylococcus Capsulatus
          Length = 320

 Score = 28.1 bits (61), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 7/45 (15%)

Query: 10 FGGIVLSPVGTHCVS---KEDYSLIKRKGLAVVDCSWARLGDVPF 51
          F G +L+  G HCVS   + DY  +K KG+ +     A LGD  F
Sbjct: 16 FYGALLAKTG-HCVSVVSRSDYETVKAKGIRIRS---ATLGDYTF 56


>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
          Complex At 2.72 Angstrom Resolution
 pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
          Complex At 2.72 Angstrom Resolution
 pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
          Complex At 2.72 Angstrom Resolution
 pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
          Complex At 2.72 Angstrom Resolution
 pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
          Complex At 2.72 Angstrom Resolution
 pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
          Complex At 2.72 Angstrom Resolution
 pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
          Complex At 2.72 Angstrom Resolution
 pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
          Complex At 2.72 Angstrom Resolution
 pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
          Complex At 2.72 Angstrom Resolution
 pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
          Complex At 2.72 Angstrom Resolution
          Length = 232

 Score = 27.7 bits (60), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 9/56 (16%)

Query: 20 THCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGR 75
          T  +S +  +  K + L V+ C WA LG      L C  P LL    A N V +G 
Sbjct: 48 TAGLSADPETFAKNRELEVIHCRWAMLG-----ALGCVFPELL----ARNGVKFGE 94


>pdb|2I9U|A Chain A, Crystal Structure Of Guanine Deaminase From C.
           Acetobutylicum With Bound Guanine In The Active Site
 pdb|2I9U|B Chain B, Crystal Structure Of Guanine Deaminase From C.
           Acetobutylicum With Bound Guanine In The Active Site
          Length = 439

 Score = 26.9 bits (58), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 11/52 (21%)

Query: 1   MQELRVSSGFGGIVLSPVG---------THCV--SKEDYSLIKRKGLAVVDC 41
           ++ L   S F G V    G          HC+  SKE+ +LIKR  + +V C
Sbjct: 240 VKSLHKKSNFYGEVYDKFGLFGNTPTLMAHCIHSSKEEINLIKRNNVTIVHC 291


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,224,392
Number of Sequences: 62578
Number of extensions: 183843
Number of successful extensions: 297
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 4
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)