BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039464
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5HZH2|TSR3_MOUSE Ribosome biogenesis protein TSR3 homolog OS=Mus musculus GN=Tsr3
PE=2 SV=1
Length = 323
Score = 170 bits (431), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 83/157 (52%), Positives = 105/157 (66%)
Query: 4 LRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLP 63
LR+S FGG+VLSPVGT VS D L+ + G+AV+DCSWA+L D PF K+R S RLLP
Sbjct: 87 LRLSQRFGGLVLSPVGTEYVSPADRQLVAQSGVAVIDCSWAKLDDTPFQKMRGSHLRLLP 146
Query: 64 WLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYS 123
+LVAANPVNYGRPC+LSCVEA +AA I G + A +LL KFKWG FL LNRELL Y+
Sbjct: 147 YLVAANPVNYGRPCKLSCVEAFAAAFCIVGFSDLAVILLRKFKWGKGFLDLNRELLDKYA 206
Query: 124 KCENSADIISVQNDWLSQQSRVPKVPSDVEGVDSNED 160
C +++ + +L+ P+ D VDS +
Sbjct: 207 ACRGPEEVLQAEQGYLASTRDTPEEDIDPFDVDSGRE 243
>sp|Q9UJK0|TSR3_HUMAN Ribosome biogenesis protein TSR3 homolog OS=Homo sapiens GN=TSR3
PE=1 SV=1
Length = 312
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/191 (45%), Positives = 112/191 (58%), Gaps = 17/191 (8%)
Query: 4 LRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLP 63
LR+ FGG+VLSPVG S D L+ + G+AV+DCSWARL + PF K+R S RLLP
Sbjct: 87 LRLGHRFGGLVLSPVGKQYASPADRQLVAQSGVAVIDCSWARLDETPFGKMRGSHLRLLP 146
Query: 64 WLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYS 123
+LVAANPVNYGRP LSCVEA +A I G + A +LL KFKWG FL LNR+LL Y+
Sbjct: 147 YLVAANPVNYGRPYRLSCVEAFAATFCIVGFPDLAVILLRKFKWGKGFLDLNRQLLDKYA 206
Query: 124 KCENSADIISVQNDWLSQQSRVPK--------VPSDVEGVDSNEDEAS---------SDA 166
C + +++ + ++L+ P+ V S E + N AS SDA
Sbjct: 207 ACGSPEEVLQAEQEFLANAKESPQEEEIDPFDVDSGREFGNPNRPVASTRLPSDTDDSDA 266
Query: 167 SDDVLPPLEKN 177
S+D P E+
Sbjct: 267 SEDPGPGAERG 277
>sp|Q12094|TSR3_YEAST Ribosome biogenesis protein TSR3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TSR3 PE=1 SV=1
Length = 313
Score = 136 bits (343), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 66/141 (46%), Positives = 91/141 (64%)
Query: 1 MQELRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPR 60
++ LRV F GIV+SP G V +D ++++ G +VV+CSWARL +VPF K+ R
Sbjct: 72 IKSLRVGQKFQGIVVSPNGKGVVCPDDLEIVEQHGASVVECSWARLEEVPFNKIGGKHER 131
Query: 61 LLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLK 120
LLP+LVAAN VNYGRP L+CVEAL+A I G + A+ LL F WG FL LN+ELL+
Sbjct: 132 LLPYLVAANQVNYGRPWRLNCVEALAACFAIVGRMDWASELLSHFSWGMGFLELNKELLE 191
Query: 121 AYSKCENSADIISVQNDWLSQ 141
Y +C + + + +WL +
Sbjct: 192 IYQQCTDCDSVKRAEEEWLQK 212
>sp|Q10409|TSR3_SCHPO Ribosome biogenesis protein tsr3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tsr3 PE=3 SV=1
Length = 288
Score = 136 bits (343), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 106/191 (55%), Gaps = 15/191 (7%)
Query: 1 MQELRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPR 60
++ LR+ F G+V++P G VS D G +VV+CSWAR+ ++PF ++ R
Sbjct: 53 VRNLRIGQKFRGVVITPNGKVPVSPADKEYFDNGGASVVECSWARIEEIPFSRIGGRCER 112
Query: 61 LLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLK 120
LLP+LVA+NPVNYGRP L+C EAL+A + I G A LL+ FKWGH+F +N ELL
Sbjct: 113 LLPYLVASNPVNYGRPWRLNCAEALAACMYIVGYPNEARLLMDNFKWGHSFFEVNEELLD 172
Query: 121 AYSKCENSADIISVQNDWLSQQSRVPKVPSDVEGVDSNEDEASSDASDDVLPPLEKNMNH 180
Y++C ++ DI + +L E ++++ E + +DD+ N+NH
Sbjct: 173 IYAQCHDAQDIQEKEKKYL-------------EEMEASYQEQRNQTTDDIWSA--GNLNH 217
Query: 181 MNLLESDGEES 191
L + S
Sbjct: 218 KPTLNTSSTHS 228
>sp|Q2NET3|TSR3_METST Probable ribosome biogenesis protein Msp_1293 OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=Msp_1293 PE=3 SV=1
Length = 171
Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 84/130 (64%)
Query: 10 FGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAAN 69
+ IVL VS+ED I + GL+ +DCSW +L F RLLP+LVAAN
Sbjct: 39 YNAIVLDAEADKAVSREDREKITKYGLSALDCSWKKLKKSSFNFKSKKNHRLLPFLVAAN 98
Query: 70 PVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSA 129
PVNYG+PC LS EALSAAL I G ++ A L+ FKWG F++LN LL+AYS+ +NS
Sbjct: 99 PVNYGKPCILSSAEALSAALYIVGYKDEARDLMNSFKWGPHFITLNENLLEAYSEAKNST 158
Query: 130 DIISVQNDWL 139
+I+ VQN++L
Sbjct: 159 EIVEVQNEFL 168
>sp|A5UJF3|TSR3_METS3 Probable ribosome biogenesis protein Msm_0126 OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=Msm_0126
PE=3 SV=1
Length = 171
Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 82/132 (62%)
Query: 11 GGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANP 70
G +VL+P VS EDY + R+G+ +DCSW + R LP+L+A NP
Sbjct: 39 GAVVLNPFAQKAVSYEDYRYVHRRGVVGLDCSWNEVSSSKKFFSLSKYHRSLPFLIATNP 98
Query: 71 VNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSAD 130
VNYG+PC LS VEA+SA L I ++ A +L FKWGH FL LN +LL+AYS+ + S D
Sbjct: 99 VNYGKPCILSTVEAVSATLYITRFKDEAKDILDGFKWGHTFLELNHDLLEAYSEADTSKD 158
Query: 131 IISVQNDWLSQQ 142
++ VQN++L +
Sbjct: 159 VVRVQNEFLESK 170
>sp|Q8TXM4|TSR3_METKA Probable ribosome biogenesis protein MK0638 OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=MK0638 PE=3 SV=1
Length = 169
Score = 124 bits (310), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 85/131 (64%), Gaps = 4/131 (3%)
Query: 11 GGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPF--VKLRCSAPRLLPWLVAA 68
G +VL P +S+ED +GL VDCSW + F ++ RC R+LP+L+AA
Sbjct: 37 GAVVLDPTVEKALSREDRDAALERGLVAVDCSWEHVHRY-FGPLRRRCRH-RILPYLIAA 94
Query: 69 NPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENS 128
NPVNYG+PC+LS VEAL+AAL I G A + +FKWG AFL LNRE L+AY + E S
Sbjct: 95 NPVNYGKPCKLSTVEALAAALYILGFRREAEEFISRFKWGPAFLELNRERLEAYRRAETS 154
Query: 129 ADIISVQNDWL 139
A+++ VQ ++L
Sbjct: 155 AEVVRVQEEFL 165
>sp|O26654|TSR3_METTH Probable ribosome biogenesis protein MTH_554 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_554 PE=3 SV=2
Length = 169
Score = 124 bits (310), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 84/129 (65%)
Query: 11 GGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANP 70
G +VL+P VS ED ++ R+G+A +DCSW ++ + R LP+LVAANP
Sbjct: 39 GALVLNPFSEKAVSPEDRDMVLRRGIAALDCSWKKVKKSSVIFQTARNHRSLPFLVAANP 98
Query: 71 VNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSAD 130
NYG+PC LS EA++A L I G ++ A+ ++ FKWG FL LNRELL+AYS+ ENS +
Sbjct: 99 TNYGKPCILSTAEAVAATLYIVGLKDIASDIMSYFKWGPHFLDLNRELLEAYSRAENSLE 158
Query: 131 IISVQNDWL 139
++ +Q ++
Sbjct: 159 VVEIQKKFI 167
>sp|Q12ZL9|TSR3_METBU Probable ribosome biogenesis protein Mbur_0088 OS=Methanococcoides
burtonii (strain DSM 6242) GN=Mbur_0088 PE=3 SV=1
Length = 173
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 82/130 (63%), Gaps = 4/130 (3%)
Query: 11 GGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDV-PFVKLRCSAPRLLPWLVAAN 69
G I+L P+ +S D + + V+DCSW + +V P + R LP+LVA N
Sbjct: 47 GSILLDPMAKQALSPADKH---EQNITVLDCSWETVEEVFPHLMRLHLQHRALPYLVATN 103
Query: 70 PVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSA 129
PVN+GRP +L+ VEA +AAL I G ++ A +L KF WGH FL +N+E L+ YSK ++S
Sbjct: 104 PVNFGRPFKLTSVEAFAAALYILGNKKQAEKILSKFNWGHVFLDMNKEPLEDYSKAKDSN 163
Query: 130 DIISVQNDWL 139
+II +Q++++
Sbjct: 164 EIIKIQSEYM 173
>sp|Q9HNJ6|TSR3_HALSA Probable ribosome biogenesis protein VNG_2075C OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=VNG_2075C PE=3 SV=2
Length = 176
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 77/129 (59%), Gaps = 6/129 (4%)
Query: 11 GGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANP 70
G+VL+P +S D + + L +DCSW G F R LP+LVAANP
Sbjct: 49 AGVVLNPHAERALSPADDTDM----LVALDCSWETAGRAMFEI--DGEHRALPFLVAANP 102
Query: 71 VNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSAD 130
VNYG+P +L+ VEA + AL I G E A LL KF WGH FL LN E L+ Y+ CE+S++
Sbjct: 103 VNYGQPFQLNTVEAFAGALAILGRWERAEELLSKFTWGHTFLELNEEPLRRYADCEDSSE 162
Query: 131 IISVQNDWL 139
+++VQ +L
Sbjct: 163 VVAVQQAYL 171
>sp|Q58118|TSR3_METJA Probable ribosome biogenesis protein MJ0708 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0708 PE=3 SV=1
Length = 172
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 79/131 (60%), Gaps = 1/131 (0%)
Query: 11 GGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANP 70
++L+P +S ED ++++ G+ +DCSW ++ F K + R LP+LVA NP
Sbjct: 43 NSLILNPYAEKALSPEDKEIVEKFGITALDCSWKE-AELMFKKFKFKNQRSLPFLVACNP 101
Query: 71 VNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSAD 130
+NYG+PC LS +EA AAL I ++ A L FKW F+ +N ELL+ YS +NS +
Sbjct: 102 INYGKPCMLSTLEAFIAALYITNFKDEAWDLTSCFKWAETFIKVNYELLERYSNAKNSME 161
Query: 131 IISVQNDWLSQ 141
++ +Q D+L +
Sbjct: 162 VVEIQQDFLRK 172
>sp|B0R700|TSR3_HALS3 Probable ribosome biogenesis protein OE_3895F OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE_3895F
PE=3 SV=1
Length = 165
Score = 107 bits (266), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 77/129 (59%), Gaps = 6/129 (4%)
Query: 11 GGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANP 70
G+VL+P +S D + + L +DCSW G F R LP+LVAANP
Sbjct: 38 AGVVLNPHAERALSPADDTDM----LVALDCSWETAGRAMFEI--DGEHRALPFLVAANP 91
Query: 71 VNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSAD 130
VNYG+P +L+ VEA + AL I G E A LL KF WGH FL LN E L+ Y+ CE+S++
Sbjct: 92 VNYGQPFQLNTVEAFAGALAILGRWERAEELLSKFTWGHTFLELNEEPLRRYADCEDSSE 151
Query: 131 IISVQNDWL 139
+++VQ +L
Sbjct: 152 VVAVQQAYL 160
>sp|Q8PSK5|TSR3_METMA Probable ribosome biogenesis protein MM_3074 OS=Methanosarcina
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM
11833 / OCM 88) GN=MM_3074 PE=3 SV=1
Length = 173
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 81/129 (62%), Gaps = 4/129 (3%)
Query: 12 GIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDV-PFVKLRCSAPRLLPWLVAANP 70
I+L P+ +S D +KG+ V+DCSW + V P ++ R LP+++A NP
Sbjct: 48 AILLDPMAEKALSPAD---DPKKGIIVLDCSWEEVERVFPELEKLNLEHRALPYMLAGNP 104
Query: 71 VNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSAD 130
VN+GRP +L+ EA +AAL I G +E A ++ KF WGH+FL LNRE L+ YS +NS +
Sbjct: 105 VNFGRPFKLNSAEAFAAALYILGYKEQAEKVMSKFNWGHSFLELNREPLEEYSTAKNSTE 164
Query: 131 IISVQNDWL 139
I+ +Q+ ++
Sbjct: 165 IVEIQSHYI 173
>sp|Q8TMY6|TSR3_METAC Probable ribosome biogenesis protein MA_2508 OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=MA_2508 PE=3 SV=1
Length = 174
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 81/129 (62%), Gaps = 4/129 (3%)
Query: 12 GIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDV-PFVKLRCSAPRLLPWLVAANP 70
I+L P+ +S D +KG+ V+DCSW + V P ++ R LP+++A NP
Sbjct: 49 AILLDPMAEKALSPAD---DPKKGIIVLDCSWEEVERVFPELEKLNLEHRALPYMLAGNP 105
Query: 71 VNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSAD 130
VN+GRP +L+ EA +AAL I G +E A ++ KF WGH+FL LNRE L Y+ +NS++
Sbjct: 106 VNFGRPFKLNSAEAFAAALYILGYKEQAEKVMSKFNWGHSFLELNREPLDEYATAKNSSE 165
Query: 131 IISVQNDWL 139
I+ +Q+ ++
Sbjct: 166 IVEIQSHYI 174
>sp|Q469W0|TSR3_METBF Probable ribosome biogenesis protein Mbar_A2412 OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=Mbar_A2412 PE=3
SV=1
Length = 173
Score = 103 bits (257), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 80/131 (61%), Gaps = 8/131 (6%)
Query: 12 GIVLSPVGTHCVS-KEDYSLIKRKGLAVVDCSWARLGDV--PFVKLRCSAPRLLPWLVAA 68
I+L P +S +DY +KG+ V+DCSW + V KL R LP+L+A
Sbjct: 48 AILLDPTVEKALSPADDY----KKGIIVLDCSWEEVERVFPDLAKLNLKH-RALPYLLAG 102
Query: 69 NPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENS 128
NPVN+GRP +L+ EA +AAL I G +E A +L KF WGH+FL LN+E L+ Y+ +NS
Sbjct: 103 NPVNFGRPFKLNSAEAFAAALYILGHKEQAEKVLSKFNWGHSFLELNKEPLEEYATAKNS 162
Query: 129 ADIISVQNDWL 139
+I+ +Q+ +
Sbjct: 163 TEIVEIQSHYF 173
>sp|Q9UWV6|TSR3_SULSO Probable ribosome biogenesis protein SSO0551 OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=SSO0551 PE=3 SV=2
Length = 166
Score = 93.2 bits (230), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 72/130 (55%), Gaps = 2/130 (1%)
Query: 12 GIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPV 71
G+VL P +S +D +++R G+ +VD SW F +R R+ P L A NP+
Sbjct: 35 GVVLDPFAQITLSNKDKDIVRRIGITIVDTSWNNTSQSEFKNIRGEHRRI-PILFAGNPI 93
Query: 72 NYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADI 131
+YG +LS +EAL A L I E E A L KWGH F+ LN+ELL+AY K + DI
Sbjct: 94 HYGIAYKLSSIEALIATLYIVDEVEEAIKLSNVVKWGHTFIELNKELLEAY-KNKTEEDI 152
Query: 132 ISVQNDWLSQ 141
++ + + +
Sbjct: 153 KKIEREIIEK 162
>sp|Q97CM6|TSR3_THEVO Probable ribosome biogenesis protein TV0075 OS=Thermoplasma
volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 /
NBRC 15438 / GSS1) GN=TV0075 PE=3 SV=1
Length = 164
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 13 IVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVN 72
+VL+P +S+ED L ++ GL V++ SW ++ + +K R R LP L+AANPVN
Sbjct: 40 LVLTPYADIFLSREDAVLYEKYGLCVIEGSWNKIDSIKSLKFRIE--RRLPALLAANPVN 97
Query: 73 YGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENS 128
YG+ LS VEA +AAL I G +TA LL KF WG F+ LN L YS + S
Sbjct: 98 YGKIGILSSVEATAAALYIIGYWDTAYALLSKFSWGLNFIKLNENPLNEYSTADRS 153
>sp|Q975W6|TSR3_SULTO Probable ribosome biogenesis protein STK_03110 OS=Sulfolobus
tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 /
7) GN=STK_03110 PE=3 SV=1
Length = 167
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 74/131 (56%), Gaps = 4/131 (3%)
Query: 12 GIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPV 71
GI+L P +S D + + G+ +VD SW + F K++ RL P L A NP
Sbjct: 35 GIILDPYSKRILSILDKDIALKTGITIVDTSWNSTSKIEFEKIKGEHRRL-PILFAGNPT 93
Query: 72 NYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAY-SKCENSAD 130
NYG +LS +EA+ A+L I E E A + KWGH FL LN+ELL++Y +K EN +
Sbjct: 94 NYGIAYKLSSIEAVIASLYILNEVEEAIKIANIIKWGHTFLELNKELLESYRNKSEN--E 151
Query: 131 IISVQNDWLSQ 141
I+ ++ + + +
Sbjct: 152 ILEIEREVIEK 162
>sp|Q9HM46|TSR3_THEAC Probable ribosome biogenesis protein Ta0023 OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=Ta0023 PE=3 SV=2
Length = 163
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 13 IVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVN 72
++L+ +SK D + +R G+ V++ SW R + F LR R LP L+AANPVN
Sbjct: 40 LMLTRSADTVLSKNDRFIAERSGICVIEGSWNR--EDTFAGLRFPYGRRLPKLLAANPVN 97
Query: 73 YGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCE 126
YG+ +LS +EA++AAL I G ++ A+ +L K+ WG FL LN+ L Y + +
Sbjct: 98 YGKLEKLSSIEAVAAALYIMGFQDDASAILSKYTWGQNFLQLNKNPLDEYREAD 151
>sp|C3N6E6|TSR3_SULIA Probable ribosome biogenesis protein M1627_1693 OS=Sulfolobus
islandicus (strain M.16.27) GN=M1627_1693 PE=3 SV=1
Length = 166
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 12 GIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPV 71
GI+L+P +S D ++ + G+ ++D SW F +R RL P L A NP+
Sbjct: 35 GIILNPFSERTLSINDKDILIKSGITIIDTSWNNTSQNEFKNVRGEHRRL-PILFAGNPI 93
Query: 72 NYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAY 122
+YG +LS +EAL A L I E + A KWGH F+ LN+ELL+AY
Sbjct: 94 HYGIAYKLSSLEALMATLYILDEMKEAIKFSNVVKWGHTFIELNKELLEAY 144
>sp|C3NEV4|TSR3_SULIY Probable ribosome biogenesis protein YG5714_1581 OS=Sulfolobus
islandicus (strain Y.G.57.14 / Yellowstone #1)
GN=YG5714_1581 PE=3 SV=1
Length = 166
Score = 83.6 bits (205), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 12 GIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPV 71
GI+L+P +S D ++ + G+ ++D SW F +R RL P L A NP+
Sbjct: 35 GIILNPFSERTLSINDKDILIKSGITIIDTSWNNTSQNEFKNVRGEHRRL-PILFAGNPI 93
Query: 72 NYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAY 122
+YG +LS +EAL A L I E + A KWGH F+ LN+ELL+AY
Sbjct: 94 HYGIAYKLSSLEALMATLYILDEVKEAIKFSNVVKWGHTFIELNKELLEAY 144
>sp|C3NGU0|TSR3_SULIN Probable ribosome biogenesis protein YN1551_1255 OS=Sulfolobus
islandicus (strain Y.N.15.51 / Yellowstone #2)
GN=YN1551_1255 PE=3 SV=1
Length = 166
Score = 83.6 bits (205), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 12 GIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPV 71
GI+L+P +S D ++ + G+ ++D SW F +R RL P L A NP+
Sbjct: 35 GIILNPFSERTLSINDKDILIKSGITIIDTSWNNTSQNEFKNVRGEHRRL-PILFAGNPI 93
Query: 72 NYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAY 122
+YG +LS +EAL A L I E + A KWGH F+ LN+ELL+AY
Sbjct: 94 HYGIAYKLSSLEALMATLYILDEVKEAIKFSNVVKWGHTFIELNKELLEAY 144
>sp|C3MWA4|TSR3_SULIM Probable ribosome biogenesis protein M1425_1577 OS=Sulfolobus
islandicus (strain M.14.25 / Kamchatka #1) GN=M1425_1577
PE=3 SV=1
Length = 166
Score = 83.6 bits (205), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 12 GIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPV 71
GI+L+P +S D ++ + G+ ++D SW F +R RL P L A NP+
Sbjct: 35 GIILNPFSERTLSINDKDILIKSGITIIDTSWNNTSQNEFKNVRGEHRRL-PILFAGNPI 93
Query: 72 NYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAY 122
+YG +LS +EAL A L I E + A KWGH F+ LN+ELL+AY
Sbjct: 94 HYGIAYKLSSLEALMATLYILDEVKEAIKFSNVVKWGHTFIELNKELLEAY 144
>sp|C3MQM6|TSR3_SULIL Probable ribosome biogenesis protein LS215_1685 OS=Sulfolobus
islandicus (strain L.S.2.15 / Lassen #1) GN=LS215_1685
PE=3 SV=1
Length = 166
Score = 83.6 bits (205), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 12 GIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPV 71
GI+L+P +S D ++ + G+ ++D SW F +R RL P L A NP+
Sbjct: 35 GIILNPFSERTLSINDKDILIKSGITIIDTSWNNTSQNEFKNVRGEHRRL-PILFAGNPI 93
Query: 72 NYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAY 122
+YG +LS +EAL A L I E + A KWGH F+ LN+ELL+AY
Sbjct: 94 HYGIAYKLSSLEALMATLYILDEVKEAIKFSNVVKWGHTFIELNKELLEAY 144
>sp|C4KHW1|TSR3_SULIK Probable ribosome biogenesis protein M164_1574 OS=Sulfolobus
islandicus (strain M.16.4 / Kamchatka #3) GN=M164_1574
PE=3 SV=1
Length = 166
Score = 83.6 bits (205), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 12 GIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPV 71
GI+L+P +S D ++ + G+ ++D SW F +R RL P L A NP+
Sbjct: 35 GIILNPFSERTLSINDKDILIKSGITIIDTSWNNTSQNEFKNVRGEHRRL-PILFAGNPI 93
Query: 72 NYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAY 122
+YG +LS +EAL A L I E + A KWGH F+ LN+ELL+AY
Sbjct: 94 HYGIAYKLSSLEALMATLYILDEVKEAIKFSNVVKWGHTFIELNKELLEAY 144
>sp|Q6FKN8|DBP5_CANGA ATP-dependent RNA helicase DBP5 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DBP5 PE=3 SV=1
Length = 504
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 77 CELSCVEALSAALIICGEEETANLLLGKFKW-GHAFLSLNREL 118
CEL + + +++I +++TANLL GK K GH L+ +L
Sbjct: 344 CELYGLLTIGSSIIFVAKKDTANLLYGKLKHEGHQVSILHSDL 386
>sp|B8D122|DNLJ_HALOH DNA ligase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM
9562) GN=ligA PE=3 SV=1
Length = 670
Score = 31.2 bits (69), Expect = 4.2, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 34/131 (25%)
Query: 23 VSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAP----RLLPWLVAANPVNYGRPCE 78
+ K+D+S + + L + G+ PF R +A +L P L AA P+++
Sbjct: 173 IKKDDFSKLNERRL--------KKGEEPFANPRNAAAGSIRQLDPRLAAARPLSF----- 219
Query: 79 LSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNREL---LKAYSKCENSADIISVQ 135
A ++ E E +G L L REL + Y KC++ +++++
Sbjct: 220 -------IAYDVVAYEGEGLQTHVGA-------LELLRELGFKVNWYRKCDDITEVVNIC 265
Query: 136 NDWLSQQSRVP 146
DW+ ++ +P
Sbjct: 266 KDWVDKREELP 276
>sp|Q76E23|IF4G_ARATH Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana
GN=EIF4G PE=1 SV=2
Length = 1727
Score = 31.2 bits (69), Expect = 4.2, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 117 ELLKAYSKCENSADIISVQNDWLSQQSRVPKVPSDVEG-VDS----NEDEASSDASDDVL 171
+L AY E + +V +D +S Q+ +P +P VE VD+ NE E DA+D
Sbjct: 831 DLYMAYKGPEEKKESSNVVHD-VSNQNLLPAIPQAVEAIVDTEPVKNEPEDWEDAADVST 889
Query: 172 PPLEKNMNHMNLLESDGEE 190
P LE N +N +E
Sbjct: 890 PKLETADNSVNAKRGSSDE 908
>sp|Q497V6|BAHD1_MOUSE Bromo adjacent homology domain-containing 1 protein OS=Mus musculus
GN=Bahd1 PE=2 SV=1
Length = 772
Score = 30.0 bits (66), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 58 APRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEE 95
AP+L P + NP +Y PC + AL + + CG++
Sbjct: 342 APQLSPLPMPGNPADYSGPCGGPELTALGSFYLYCGQD 379
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,949,347
Number of Sequences: 539616
Number of extensions: 2830432
Number of successful extensions: 5910
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 5861
Number of HSP's gapped (non-prelim): 40
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)