Query 039464
Match_columns 192
No_of_seqs 127 out of 311
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 09:54:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039464.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039464hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3154 Uncharacterized conser 100.0 5.2E-73 1.1E-77 488.1 14.9 191 1-191 69-262 (263)
2 PF04034 DUF367: Domain of unk 100.0 6.3E-69 1.4E-73 427.6 11.0 127 13-140 1-127 (127)
3 COG2042 Uncharacterized conser 100.0 1.4E-66 3.1E-71 431.5 11.1 140 2-142 39-178 (179)
4 PRK02287 hypothetical protein; 100.0 6.8E-65 1.5E-69 421.2 12.7 141 1-142 28-170 (171)
5 PF03942 DTW: DTW domain; Int 97.7 2.8E-05 6.1E-10 64.6 2.9 77 32-111 113-198 (203)
6 KOG3795 Uncharacterized conser 86.6 0.75 1.6E-05 40.1 3.4 97 35-144 124-224 (230)
7 COG3148 Uncharacterized conser 86.4 0.56 1.2E-05 41.5 2.6 79 36-128 132-218 (231)
8 cd00593 RIBOc RIBOc. Ribonucle 82.8 1.2 2.6E-05 33.4 2.7 28 78-105 96-123 (133)
9 smart00535 RIBOc Ribonuclease 73.5 3.1 6.6E-05 31.3 2.5 28 78-105 94-121 (129)
10 KOG2925 Predicted translation 65.8 9.1 0.0002 32.5 3.9 24 167-190 135-158 (167)
11 PF15249 GLTSCR1: Glioma tumor 64.8 13 0.00029 28.5 4.4 81 49-144 19-105 (109)
12 PRK12371 ribonuclease III; Rev 52.1 12 0.00026 32.4 2.5 32 79-111 122-153 (235)
13 TIGR02191 RNaseIII ribonucleas 51.4 13 0.00028 30.6 2.5 31 78-109 110-140 (220)
14 PRK06274 indolepyruvate oxidor 48.2 27 0.00059 28.5 3.9 46 73-121 138-187 (197)
15 PRK00102 rnc ribonuclease III; 46.8 17 0.00036 30.3 2.5 31 78-109 116-146 (229)
16 PF07721 TPR_4: Tetratricopept 46.0 31 0.00068 19.6 2.9 20 84-103 6-25 (26)
17 smart00013 LRRNT Leucine rich 43.5 15 0.00032 22.5 1.3 15 37-51 11-25 (33)
18 PF14622 Ribonucleas_3_3: Ribo 41.2 17 0.00036 28.1 1.5 25 80-104 98-122 (128)
19 TIGR03504 FimV_Cterm FimV C-te 38.6 36 0.00077 22.6 2.6 19 85-103 5-23 (44)
20 PRK14718 ribonuclease III; Pro 35.4 49 0.0011 32.3 3.9 26 80-105 111-136 (467)
21 PF00636 Ribonuclease_3: Ribon 34.7 28 0.00062 25.5 1.8 13 80-92 100-112 (114)
22 cd06447 D-Ser-dehyd D-Serine d 33.0 36 0.00078 32.0 2.6 9 68-77 4-12 (404)
23 KOG3988 Protein-tyrosine sulfo 32.3 21 0.00044 33.6 0.9 12 67-78 330-341 (378)
24 PF03704 BTAD: Bacterial trans 31.5 1.1E+02 0.0024 23.1 4.7 66 78-143 61-127 (146)
25 PF09400 DUF2002: Protein of u 31.5 14 0.0003 29.6 -0.3 32 57-88 73-105 (111)
26 KOG0416 Ubiquitin-protein liga 31.1 70 0.0015 27.8 3.8 47 60-127 105-151 (189)
27 PF04252 RNA_Me_trans: Predict 30.9 33 0.00071 29.8 1.8 22 8-29 61-82 (196)
28 PF13504 LRR_7: Leucine rich r 30.9 23 0.0005 18.9 0.6 15 36-50 3-17 (17)
29 PRK08534 pyruvate ferredoxin o 30.0 58 0.0012 26.6 3.1 84 30-121 86-172 (181)
30 KOG0309 Conserved WD40 repeat- 29.3 55 0.0012 34.4 3.4 89 3-110 20-114 (1081)
31 PF11427 HTH_Tnp_Tc3_1: Tc3 tr 29.1 26 0.00056 24.2 0.7 10 66-75 40-49 (50)
32 PRK12372 ribonuclease III; Rev 28.8 77 0.0017 30.5 4.0 29 80-109 111-139 (413)
33 PF13374 TPR_10: Tetratricopep 28.5 74 0.0016 18.4 2.7 24 79-102 2-25 (42)
34 PF02778 tRNA_int_endo_N: tRNA 27.5 36 0.00078 24.3 1.3 18 72-89 31-48 (67)
35 PF13524 Glyco_trans_1_2: Glyc 27.5 37 0.0008 23.7 1.3 44 69-115 4-47 (92)
36 COG0849 ftsA Cell division ATP 26.4 45 0.00097 31.8 2.1 91 5-115 176-268 (418)
37 PF07862 Nif11: Nitrogen fixat 26.4 89 0.0019 20.3 3.0 26 113-138 14-39 (49)
38 PF09361 Phasin_2: Phasin prot 25.7 1.8E+02 0.0039 20.3 4.7 34 109-142 38-71 (102)
39 COG0761 lytB 4-Hydroxy-3-methy 24.8 60 0.0013 30.0 2.5 34 12-48 69-102 (294)
40 PF13720 Acetyltransf_11: Udp 24.7 80 0.0017 23.2 2.7 62 62-134 3-70 (83)
41 COG2442 Uncharacterized conser 24.1 1E+02 0.0022 23.0 3.2 39 66-107 13-55 (79)
42 TIGR01419 nitro_reg_IIA PTS II 23.6 48 0.001 25.4 1.4 62 64-135 78-143 (145)
43 PF10446 DUF2457: Protein of u 22.8 50 0.0011 32.2 1.6 12 179-190 105-116 (458)
44 KOG1529 Mercaptopyruvate sulfu 22.7 46 0.00099 30.6 1.3 69 27-97 12-86 (286)
45 PF04931 DNA_pol_phi: DNA poly 22.4 71 0.0015 32.2 2.7 11 113-123 554-564 (784)
46 PRK10203 hypothetical protein; 22.2 2.3E+02 0.0049 22.9 5.1 54 72-131 26-82 (122)
47 TIGR01985 phasin_2 phasin. Mem 22.1 1.7E+02 0.0037 22.6 4.3 37 106-142 55-91 (112)
48 KOG3569 RAS signaling inhibito 21.1 53 0.0011 31.6 1.4 45 99-144 221-265 (425)
49 PF02401 LYTB: LytB protein; 20.6 79 0.0017 28.5 2.4 30 12-44 66-95 (281)
50 PRK01045 ispH 4-hydroxy-3-meth 20.5 92 0.002 28.4 2.8 31 12-45 68-98 (298)
51 COG0571 Rnc dsRNA-specific rib 20.5 99 0.0022 27.2 2.9 24 80-103 121-144 (235)
52 PF12854 PPR_1: PPR repeat 20.5 1.3E+02 0.0029 18.1 2.7 25 80-104 8-32 (34)
53 COG5490 Uncharacterized conser 20.4 1.2E+02 0.0027 25.6 3.3 25 118-142 93-117 (158)
54 PRK12360 4-hydroxy-3-methylbut 20.3 94 0.002 28.1 2.8 31 12-45 71-101 (281)
55 PF01053 Cys_Met_Meta_PP: Cys/ 20.2 39 0.00084 31.4 0.3 37 9-45 140-182 (386)
56 cd07944 DRE_TIM_HOA_like 4-hyd 20.1 1.7E+02 0.0036 25.6 4.2 18 31-48 204-221 (266)
No 1
>KOG3154 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.2e-73 Score=488.07 Aligned_cols=191 Identities=52% Similarity=0.891 Sum_probs=171.3
Q ss_pred CccccCCCCcccEEeCCCCCccCCcccHHHHHhcCeEEEecccccccccccccccCCCCcccchhhhhCCCCCCCccccc
Q 039464 1 MQELRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELS 80 (192)
Q Consensus 1 ~~~lr~~~~f~GIVLsP~~~~~lSp~D~~ii~~~GlaVIDCSW~~l~~~~f~k~~~~~~R~LP~LvAANPVNYGKP~kLs 80 (192)
++.||++|+|+||||||.|++++||+|+++|+++|++||||||+||+++||.||+++|.|+||||||||||||||||+||
T Consensus 69 v~~lr~g~kF~GvVlSP~gk~~vsp~D~d~v~~~G~avvdCSWArLdevpF~kl~~~h~RLLP~lVAANpVNYGrP~rLn 148 (263)
T KOG3154|consen 69 VRNLRVGQKFGGVVLSPVGKQCVSPADRDVVERSGAAVVDCSWARLDEVPFGKLRGRHERLLPYLVAANPVNYGRPWRLN 148 (263)
T ss_pred HHHhhccCccCceEECCCCCcccCHHHHHHHHhcCceEEecchhhccccchhhcCCCcccccchhhhcCccccCCCceec
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHhcCCchhhHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCCCCCCccc-CCCCc
Q 039464 81 CVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWLSQQSRVPKVPSDVEG-VDSNE 159 (192)
Q Consensus 81 cvEAlAAaLyI~G~~~~A~~lL~~FkWG~~Fl~LN~elLe~Y~~c~~~~Ev~~~q~~yl~~~~~~~~~~~~~~~-~~~~~ 159 (192)
|||||||+||||||.++|..||++|||||.||+||++||+.|++|.+++||+++|++||+++.+.++.+.+... .|++.
T Consensus 149 CvEAlaA~l~I~G~~e~A~~lL~~F~wG~~Fl~lN~~lLd~Ya~C~~s~ev~~~qn~~Le~~~~~~Qe~~~~~~~~d~g~ 228 (263)
T KOG3154|consen 149 CVEALAACLYICGFPEEARELLDKFKWGHAFLELNKDLLDEYAKCASSAEVVEVQNEFLESQEKSPQEPRARPIDVDAGN 228 (263)
T ss_pred HHHHHHhHeeeecChhHHHHHHhcCcchHHHHHHhHHHHHHHHhhCCHHHHHHHHHHHHHHhhhcccCCccccchhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999887654333222 11111
Q ss_pred c--ccCCCCCCCCCCccccccCcCCCCCCCCCcC
Q 039464 160 D--EASSDASDDVLPPLEKNMNHMNLLESDGEES 191 (192)
Q Consensus 160 ~--~~~~~~~dd~~~~l~~n~n~~~~~~~~~~~~ 191 (192)
+ ..+.++|++.+|+..++++|...+.+.+++.
T Consensus 229 ~~~~~s~~~sst~~~~~s~~~d~~~~~~~~~~d~ 262 (263)
T KOG3154|consen 229 ENGKPSLSTSSTHLPEESRDSDHEPSEASLAEDD 262 (263)
T ss_pred ccCCCCcCccccCCCccccCccccCCCcchhhcc
Confidence 1 2334446778999999999998887777664
No 2
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=100.00 E-value=6.3e-69 Score=427.64 Aligned_cols=127 Identities=60% Similarity=1.074 Sum_probs=125.5
Q ss_pred EEeCCCCCccCCcccHHHHHhcCeEEEecccccccccccccccCCCCcccchhhhhCCCCCCCcccccHHHHHHHHHHHc
Q 039464 13 IVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALSAALIIC 92 (192)
Q Consensus 13 IVLsP~~~~~lSp~D~~ii~~~GlaVIDCSW~~l~~~~f~k~~~~~~R~LP~LvAANPVNYGKP~kLscvEAlAAaLyI~ 92 (192)
|||||+|+++|||+||++|+++||+||||||++++++ |.+++.+++|+|||||||||||||||||||||||+||||||+
T Consensus 1 ivLsP~~~~~lSp~Dr~iv~~~Gi~viDCSW~~l~~~-f~k~~~~~~R~LP~LvAaNPVNYGkP~kLscvEAlAAaLyI~ 79 (127)
T PF04034_consen 1 IVLSPFATKYLSPADREIVEKSGIAVIDCSWNRLDEV-FKKLRSRNHRLLPYLVAANPVNYGKPCKLSCVEALAAALYIL 79 (127)
T ss_pred CeeCCCCCcccCHHHHHHHHHCCEEEEECcHHHHHHH-HHhcCCCCCccCchhhccCCcccCCcccccHHHHHHHHHHHc
Confidence 7999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhcCCchhhHHHHhHHHHHHHhcCCCHHHHHHHHHHHHH
Q 039464 93 GEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWLS 140 (192)
Q Consensus 93 G~~~~A~~lL~~FkWG~~Fl~LN~elLe~Y~~c~~~~Ev~~~q~~yl~ 140 (192)
|++++|++||++|||||+|++||+++|++|++|+|++||+++|++||+
T Consensus 80 G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~le 127 (127)
T PF04034_consen 80 GFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEYLE 127 (127)
T ss_pred CCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999985
No 3
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.4e-66 Score=431.53 Aligned_cols=140 Identities=51% Similarity=0.889 Sum_probs=137.0
Q ss_pred ccccCCCCcccEEeCCCCCccCCcccHHHHHhcCeEEEecccccccccccccccCCCCcccchhhhhCCCCCCCcccccH
Q 039464 2 QELRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSC 81 (192)
Q Consensus 2 ~~lr~~~~f~GIVLsP~~~~~lSp~D~~ii~~~GlaVIDCSW~~l~~~~f~k~~~~~~R~LP~LvAANPVNYGKP~kLsc 81 (192)
+.+|++++|.||||+|++.++|||+|+++++++||+||||||++++.+ |.++++++||+||||||||||||||||+|||
T Consensus 39 ~~~r~~~~~~~vvL~P~ae~~lSp~D~~iver~Gi~vvdcSW~~~~~~-f~~l~~~~~R~LP~LvAaNPVNYGkp~kLss 117 (179)
T COG2042 39 RLLRVGGKFPGVVLTPFAEKALSPADRDIVERFGITVVDCSWNRVERV-FKKLRGREHRRLPFLVAANPVNYGKPFKLSS 117 (179)
T ss_pred hhhcccCccceeEECCCcccccChhhHHHHHhcCeEEEEccHHHHHHH-HHhcCccccccccHhhhcCCcccCCcchhch
Confidence 568999999999999999999999999999999999999999999999 8999988999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHhcCCchhhHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 039464 82 VEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWLSQQ 142 (192)
Q Consensus 82 vEAlAAaLyI~G~~~~A~~lL~~FkWG~~Fl~LN~elLe~Y~~c~~~~Ev~~~q~~yl~~~ 142 (192)
|||+||||||+||+++|.+||++|+|||+||+||+++|++|++|+++.||+++|++||+++
T Consensus 118 ~EAlaAaLYI~G~~deA~~lls~F~WG~~FleLN~e~Le~Y~~a~~s~eVveiq~~~l~~~ 178 (179)
T COG2042 118 AEALAAALYIVGFKDEASELLSKFKWGHTFLELNKELLEEYSNAEDSAEVVEIQEEYLEKG 178 (179)
T ss_pred HHHHHHHHHHhCcHHHHHHHHhhCcccHHHHHHhHHHHHHHHhccchHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999875
No 4
>PRK02287 hypothetical protein; Provisional
Probab=100.00 E-value=6.8e-65 Score=421.17 Aligned_cols=141 Identities=45% Similarity=0.795 Sum_probs=134.2
Q ss_pred CccccCCCCcc-c-EEeCCCCCccCCcccHHHHHhcCeEEEecccccccccccccccCCCCcccchhhhhCCCCCCCccc
Q 039464 1 MQELRVSSGFG-G-IVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCE 78 (192)
Q Consensus 1 ~~~lr~~~~f~-G-IVLsP~~~~~lSp~D~~ii~~~GlaVIDCSW~~l~~~~f~k~~~~~~R~LP~LvAANPVNYGKP~k 78 (192)
+|.++++++|. | |||||+|+++|||+|+++++++||+||||||+++++++|.+++ +++|+||||||||||||||||+
T Consensus 28 ~~~~~~~~~~~~g~IvL~P~a~~~lSp~D~~~~~~~Gi~vlDcSW~~~~~~~~~~~~-~~~R~LP~LvAaNPvNYGkp~k 106 (171)
T PRK02287 28 ARLVRSIRKIPRGSIVLNPFAEKALSPADRDIVEKRGIVALDCSWNEAERVFFKLLR-GHHRRLPFLVAANPVNYGKPFK 106 (171)
T ss_pred eeEecccccCCCCeEEECCCCCcCcCHHHHHhhhhCCEEEEECCHHHHhhhhhhccC-CCcccCccccccCCCcCCCccc
Confidence 46788899864 4 9999999999999999999999999999999999999998775 5689999999999999999999
Q ss_pred ccHHHHHHHHHHHcCChHHHHHHHhcCCchhhHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 039464 79 LSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWLSQQ 142 (192)
Q Consensus 79 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~Fl~LN~elLe~Y~~c~~~~Ev~~~q~~yl~~~ 142 (192)
||||||+||||||+|++++|.+||++|+|||+||+||+++|++|++|+|++||+++|++||.+.
T Consensus 107 Ls~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~~~~ 170 (171)
T PRK02287 107 LSSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEYLGKI 170 (171)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999764
No 5
>PF03942 DTW: DTW domain; InterPro: IPR005636 This presumed domain is found in bacterial and eukaryotic proteins. Its function is unknown. The domain contains multiple conserved motifs including a DTXW motif that this domain has been named after.
Probab=97.68 E-value=2.8e-05 Score=64.57 Aligned_cols=77 Identities=29% Similarity=0.279 Sum_probs=51.5
Q ss_pred HhcCeEEEecccccccccccccccCCCCcccch--hhhhCCCCCC-----CcccccHHHHHHHHHHHcCCh-HH-HHHHH
Q 039464 32 KRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPW--LVAANPVNYG-----RPCELSCVEALSAALIICGEE-ET-ANLLL 102 (192)
Q Consensus 32 ~~~GlaVIDCSW~~l~~~~f~k~~~~~~R~LP~--LvAANPVNYG-----KP~kLscvEAlAAaLyI~G~~-~~-A~~lL 102 (192)
....+.|||++|+++..|.-. ....+.||- |-...+-.|. ++..|||+||+|.+|..+|.. +. ++.||
T Consensus 113 ~~~~lIviDgTW~qA~km~~~---~p~l~~lp~v~l~~~~~s~y~lRk~~~~~~lsT~EAv~~~L~~l~~~~~~~~~~Ll 189 (203)
T PF03942_consen 113 KPKTLIVIDGTWRQAKKMLRR---SPWLQQLPRVSLKPSPPSFYRLRKQPKEGCLSTLEAVAYALKELEEAPDEVADNLL 189 (203)
T ss_pred CceEEEEECCchHHHHHHHhh---CccccCCceeeCCCCcccceeeEecCCCCCEeHHHHHHHHHHHhcchhHHHHHHHH
Confidence 346799999999998776320 112222332 1122222332 677999999999999999999 54 89999
Q ss_pred hcCCchhhH
Q 039464 103 GKFKWGHAF 111 (192)
Q Consensus 103 ~~FkWG~~F 111 (192)
..|+.--.+
T Consensus 190 ~~f~~~~~~ 198 (203)
T PF03942_consen 190 DAFDAMVRR 198 (203)
T ss_pred HHHHHHHHH
Confidence 888765443
No 6
>KOG3795 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.57 E-value=0.75 Score=40.08 Aligned_cols=97 Identities=20% Similarity=0.290 Sum_probs=53.6
Q ss_pred CeEEEecccccccccc-cccccCCCCcccc-hhhhh-CCCCCCCc-ccccHHHHHHHHHHHcCChHHHHHHHhcCCchhh
Q 039464 35 GLAVVDCSWARLGDVP-FVKLRCSAPRLLP-WLVAA-NPVNYGRP-CELSCVEALSAALIICGEEETANLLLGKFKWGHA 110 (192)
Q Consensus 35 GlaVIDCSW~~l~~~~-f~k~~~~~~R~LP-~LvAA-NPVNYGKP-~kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~ 110 (192)
-+.||||+|++...|- -.++++-.+-.|- ++-+- -| .-|-| +.|.++||+.-.| .+- ..-+||-.
T Consensus 124 r~v~~d~tw~q~~~~~~~~~i~gl~~v~lq~~~s~fwr~-q~~~p~~~latieai~~~l-----~e~-----~~~~~g~~ 192 (230)
T KOG3795|consen 124 RIVVLDCTWFQVGVMQKTPQIQGLQHVSLQSYRTAFWRP-QHNVPETGLATIEAIYYSL-----REY-----QELGLGRK 192 (230)
T ss_pred EEEEEeceehhhcceecCccccceeeeehhhHHHHhccc-ccCCchhhHhHHHHHHHHH-----HHH-----HHhhhhhh
Confidence 4899999999987662 1233332222222 12111 12 22233 5899999998776 221 22357764
Q ss_pred HHHHhHHHHHHHhcCCCHHHHHHHHHHHHHhccc
Q 039464 111 FLSLNRELLKAYSKCENSADIISVQNDWLSQQSR 144 (192)
Q Consensus 111 Fl~LN~elLe~Y~~c~~~~Ev~~~q~~yl~~~~~ 144 (192)
+--+.. ++.|.--.+-.++...|..|+..-++
T Consensus 193 y~g~~~--~~~~~~fh~~~~~~~k~a~~~~~~~e 224 (230)
T KOG3795|consen 193 YSGEFD--DLLYWFFHTKHFVDGKQADYLRRKDE 224 (230)
T ss_pred hcCcch--hHHHhhhhhhhccccchhhhhhhccc
Confidence 443333 33455556677777777777755443
No 7
>COG3148 Uncharacterized conserved protein [Function unknown]
Probab=86.41 E-value=0.56 Score=41.48 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=52.2
Q ss_pred eEEEeccccccccccccc--ccC------CCCcccchhhhhCCCCCCCcccccHHHHHHHHHHHcCChHHHHHHHhcCCc
Q 039464 36 LAVVDCSWARLGDVPFVK--LRC------SAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKW 107 (192)
Q Consensus 36 laVIDCSW~~l~~~~f~k--~~~------~~~R~LP~LvAANPVNYGKP~kLscvEAlAAaLyI~G~~~~A~~lL~~FkW 107 (192)
+.++|.+|.++-+|.-+. +.. ...|+=-|-+.-+| .+-.|++||+.++.|-..|-...|+.|+..|-
T Consensus 132 fIllDgTW~eArKMfrksPyLa~lP~vsl~~~~lS~YRLRka~----~e~~lcT~Eva~~lLd~~gd~~aae~L~~~f~- 206 (231)
T COG3148 132 FILLDGTWREARKMFRKSPYLADLPVVSLDPERLSAYRLRKAQ----AEGQLCTAEVAAALLDMAGDERAAEALGKHFD- 206 (231)
T ss_pred EEEecCccHHHHHHHhcCchhccCCccccCHHHhhHHHHhhCC----CCCceeHHHHHHHHHHHhCChhhhHHHHHHHH-
Confidence 567799999877664211 000 01122223344455 77899999999999999999999999977662
Q ss_pred hhhHHHHhHHHHHHHhcCCCH
Q 039464 108 GHAFLSLNRELLKAYSKCENS 128 (192)
Q Consensus 108 G~~Fl~LN~elLe~Y~~c~~~ 128 (192)
-..+.|-.|++.
T Consensus 207 ---------~f~e~yla~k~~ 218 (231)
T COG3148 207 ---------AFKERYLAGKSE 218 (231)
T ss_pred ---------HHHHHHHhcCcc
Confidence 234556666543
No 8
>cd00593 RIBOc RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.
Probab=82.84 E-value=1.2 Score=33.44 Aligned_cols=28 Identities=29% Similarity=0.268 Sum_probs=24.7
Q ss_pred cccHHHHHHHHHHHcCChHHHHHHHhcC
Q 039464 78 ELSCVEALSAALIICGEEETANLLLGKF 105 (192)
Q Consensus 78 kLscvEAlAAaLyI~G~~~~A~~lL~~F 105 (192)
.=+++||+.+|+|+.+-.+.|.+++..+
T Consensus 96 ~ad~~eAliGAiyld~g~~~~~~~i~~~ 123 (133)
T cd00593 96 LADVFEALIGAIYLDGGFEAARKFLLRL 123 (133)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4578999999999999989999998776
No 9
>smart00535 RIBOc Ribonuclease III family.
Probab=73.52 E-value=3.1 Score=31.27 Aligned_cols=28 Identities=21% Similarity=0.199 Sum_probs=23.2
Q ss_pred cccHHHHHHHHHHHcCChHHHHHHHhcC
Q 039464 78 ELSCVEALSAALIICGEEETANLLLGKF 105 (192)
Q Consensus 78 kLscvEAlAAaLyI~G~~~~A~~lL~~F 105 (192)
.=+++||+.+|+|+-+-.+.|.+++.++
T Consensus 94 ~a~~~eAliGAi~ld~g~~~~~~~i~~~ 121 (129)
T smart00535 94 LADVFEALIGAIYLDSGLEAAREFIRDL 121 (129)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4468999999999998888888887543
No 10
>KOG2925 consensus Predicted translation initiation factor related to eIF-1A [Translation, ribosomal structure and biogenesis]
Probab=65.77 E-value=9.1 Score=32.48 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=17.5
Q ss_pred CCCCCCccccccCcCCCCCCCCCc
Q 039464 167 SDDVLPPLEKNMNHMNLLESDGEE 190 (192)
Q Consensus 167 ~dd~~~~l~~n~n~~~~~~~~~~~ 190 (192)
++|+.|||..|.|+..-.+++++.
T Consensus 135 e~ddds~l~~ntnr~~~~~~eee~ 158 (167)
T KOG2925|consen 135 EDDDDSPLQANTNRLRPFGVEEEA 158 (167)
T ss_pred ccccCCchhccccccCcccccccC
Confidence 566779999999999655554443
No 11
>PF15249 GLTSCR1: Glioma tumor suppressor candidate region
Probab=64.81 E-value=13 Score=28.53 Aligned_cols=81 Identities=25% Similarity=0.327 Sum_probs=49.4
Q ss_pred cccccccCCCCcccchhhhhCCCCCCCcccc-----cHHHHHHHHHHHcCChHHHHHHHhcCCchhhHHHHhHHHHHHHh
Q 039464 49 VPFVKLRCSAPRLLPWLVAANPVNYGRPCEL-----SCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYS 123 (192)
Q Consensus 49 ~~f~k~~~~~~R~LP~LvAANPVNYGKP~kL-----scvEAlAAaLyI~G~~~~A~~lL~~FkWG~~Fl~LN~elLe~Y~ 123 (192)
.||..+.-...|+|||=|-+.|.-=.+++.. ...|+.++- +....+.++++| | .+|-+.+
T Consensus 19 tPF~s~~DA~~RLLPYHv~~~~~~~~~d~~~~~~~d~~~e~~~~~-----~~~~~~~~~~k~---------~-~ll~re~ 83 (109)
T PF15249_consen 19 TPFRSLEDAVERLLPYHVFQEPEEDEDDFEKASDWDEEFETVAAE-----LLKRFEKMLNKY---------R-RLLLRES 83 (109)
T ss_pred CCCCCHHHHHHHhcchhhhcCCCCChhhhhhhhhhHHHHHHHHHH-----HHHHHHHHHHHH---------H-HHHHHHH
Confidence 5998887789999999666666332233322 123333333 244555555443 2 3555554
Q ss_pred -cCCCHHHHHHHHHHHHHhccc
Q 039464 124 -KCENSADIISVQNDWLSQQSR 144 (192)
Q Consensus 124 -~c~~~~Ev~~~q~~yl~~~~~ 144 (192)
+...++|.+-++.-+++..++
T Consensus 84 ~r~~~~~E~~ml~r~~~~~Er~ 105 (109)
T PF15249_consen 84 MRDSPSEERVMLERLFLEDERR 105 (109)
T ss_pred ccCCChHHHHHHHHHHHHHHHH
Confidence 466789988899988877654
No 12
>PRK12371 ribonuclease III; Reviewed
Probab=52.07 E-value=12 Score=32.37 Aligned_cols=32 Identities=31% Similarity=0.496 Sum_probs=26.9
Q ss_pred ccHHHHHHHHHHHcCChHHHHHHHhcCCchhhH
Q 039464 79 LSCVEALSAALIICGEEETANLLLGKFKWGHAF 111 (192)
Q Consensus 79 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F 111 (192)
=.++||+.+|+|+-+-.+.|..++.+| |.+.+
T Consensus 122 ad~~EAliGAiylD~G~~~a~~~i~~~-~~~~~ 153 (235)
T PRK12371 122 ADVVEALIAAIYLDGGLEAARPFIQRY-WQKRA 153 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHH
Confidence 368999999999999999999999887 55433
No 13
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=51.38 E-value=13 Score=30.56 Aligned_cols=31 Identities=23% Similarity=0.118 Sum_probs=25.3
Q ss_pred cccHHHHHHHHHHHcCChHHHHHHHhcCCchh
Q 039464 78 ELSCVEALSAALIICGEEETANLLLGKFKWGH 109 (192)
Q Consensus 78 kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~ 109 (192)
.=+++||+.+|+|+-+-.+.|..++.++ |.+
T Consensus 110 ~ad~~eAliGAiyld~g~~~~~~~i~~~-~~~ 140 (220)
T TIGR02191 110 LADAFEALIGAIYLDSGLEAARKFILKL-LIP 140 (220)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHH
Confidence 3468999999999998889988887766 443
No 14
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=48.16 E-value=27 Score=28.54 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=31.4
Q ss_pred CCCcccccHHHHHHHHHH--HcCC-hHHHHHHHh-cCCchhhHHHHhHHHHHH
Q 039464 73 YGRPCELSCVEALSAALI--ICGE-EETANLLLG-KFKWGHAFLSLNRELLKA 121 (192)
Q Consensus 73 YGKP~kLscvEAlAAaLy--I~G~-~~~A~~lL~-~FkWG~~Fl~LN~elLe~ 121 (192)
+|.|-..|++ ++.|.+. ++|. .+..++.|. .| |..+.++|...++.
T Consensus 138 ~g~~~~~N~v-~lGa~~~~~~l~i~~e~~~~ai~~~~--~~~~ve~N~~A~~~ 187 (197)
T PRK06274 138 IGNPRSLNVI-MLGAAFGAGLLPLSKESVLETIEAEL--PEKLREINLAAFEL 187 (197)
T ss_pred cCChHHHHHH-HHHHHHHCCCCCCCHHHHHHHHHHHc--CchhHHHHHHHHHH
Confidence 5777655554 4444444 5665 466677775 57 88999999998876
No 15
>PRK00102 rnc ribonuclease III; Reviewed
Probab=46.75 E-value=17 Score=30.26 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=25.3
Q ss_pred cccHHHHHHHHHHHcCChHHHHHHHhcCCchh
Q 039464 78 ELSCVEALSAALIICGEEETANLLLGKFKWGH 109 (192)
Q Consensus 78 kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~ 109 (192)
.=+++||+.+|+|+-+-.+.|.+++..+ |.+
T Consensus 116 ~ad~~EA~iGAiyld~g~~~~~~~i~~~-~~~ 146 (229)
T PRK00102 116 LADAFEALIGAIYLDQGLEAARKFILRL-FEP 146 (229)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHH
Confidence 3478999999999998888888888777 443
No 16
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=46.02 E-value=31 Score=19.64 Aligned_cols=20 Identities=40% Similarity=0.541 Sum_probs=17.8
Q ss_pred HHHHHHHHcCChHHHHHHHh
Q 039464 84 ALSAALIICGEEETANLLLG 103 (192)
Q Consensus 84 AlAAaLyI~G~~~~A~~lL~ 103 (192)
.+|.+++-.|..++|..++.
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 57889999999999999875
No 17
>smart00013 LRRNT Leucine rich repeat N-terminal domain.
Probab=43.55 E-value=15 Score=22.45 Aligned_cols=15 Identities=47% Similarity=0.789 Sum_probs=12.9
Q ss_pred EEEeccccccccccc
Q 039464 37 AVVDCSWARLGDVPF 51 (192)
Q Consensus 37 aVIDCSW~~l~~~~f 51 (192)
.+|||+++.|..+|.
T Consensus 11 ~~V~C~~~~L~~vP~ 25 (33)
T smart00013 11 TAVDCSGRGLTEVPL 25 (33)
T ss_pred CEeEeCCCCcCccCC
Confidence 479999999998884
No 18
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B.
Probab=41.19 E-value=17 Score=28.14 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=20.6
Q ss_pred cHHHHHHHHHHHcCChHHHHHHHhc
Q 039464 80 SCVEALSAALIICGEEETANLLLGK 104 (192)
Q Consensus 80 scvEAlAAaLyI~G~~~~A~~lL~~ 104 (192)
.|+||+.+|.|+=+=.+.|..++.+
T Consensus 98 d~feAliGAiyld~G~~~a~~~i~~ 122 (128)
T PF14622_consen 98 DVFEALIGAIYLDSGFEAARKFIQK 122 (128)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 6899999999998888888887654
No 19
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=38.57 E-value=36 Score=22.60 Aligned_cols=19 Identities=42% Similarity=0.412 Sum_probs=17.2
Q ss_pred HHHHHHHcCChHHHHHHHh
Q 039464 85 LSAALIICGEEETANLLLG 103 (192)
Q Consensus 85 lAAaLyI~G~~~~A~~lL~ 103 (192)
+|.+++-+|..+.|..+|.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~ 23 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLE 23 (44)
T ss_pred HHHHHHHcCChHHHHHHHH
Confidence 6889999999999999975
No 20
>PRK14718 ribonuclease III; Provisional
Probab=35.39 E-value=49 Score=32.34 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.4
Q ss_pred cHHHHHHHHHHHcCChHHHHHHHhcC
Q 039464 80 SCVEALSAALIICGEEETANLLLGKF 105 (192)
Q Consensus 80 scvEAlAAaLyI~G~~~~A~~lL~~F 105 (192)
.++|||.+|+|+-|-.+.+..++.+|
T Consensus 111 DvFEALIGAIYLDsG~e~a~~fI~~l 136 (467)
T PRK14718 111 DAFEAIIGAVFLDGGFEAAQGVIKRL 136 (467)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 68999999999998888888887655
No 21
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3.1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A ....
Probab=34.72 E-value=28 Score=25.54 Aligned_cols=13 Identities=31% Similarity=0.345 Sum_probs=11.6
Q ss_pred cHHHHHHHHHHHc
Q 039464 80 SCVEALSAALIIC 92 (192)
Q Consensus 80 scvEAlAAaLyI~ 92 (192)
.++||+.+|+|+-
T Consensus 100 D~~EAliGAiyld 112 (114)
T PF00636_consen 100 DVFEALIGAIYLD 112 (114)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6899999999984
No 22
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=32.96 E-value=36 Score=32.00 Aligned_cols=9 Identities=67% Similarity=1.479 Sum_probs=8.0
Q ss_pred hCCCCCCCcc
Q 039464 68 ANPVNYGRPC 77 (192)
Q Consensus 68 ANPVNYGKP~ 77 (192)
-|| |||||.
T Consensus 4 ~~~-~~~~~~ 12 (404)
T cd06447 4 KNP-NYGKPA 12 (404)
T ss_pred cCC-CCCchh
Confidence 489 999997
No 23
>KOG3988 consensus Protein-tyrosine sulfotransferase TPST1/TPST2 [Posttranslational modification, protein turnover, chaperones]
Probab=32.30 E-value=21 Score=33.57 Aligned_cols=12 Identities=58% Similarity=0.960 Sum_probs=10.2
Q ss_pred hhCCCCCCCccc
Q 039464 67 AANPVNYGRPCE 78 (192)
Q Consensus 67 AANPVNYGKP~k 78 (192)
-|||-|||||-.
T Consensus 330 ~anpPnYgkpd~ 341 (378)
T KOG3988|consen 330 YANPPNYGKPDP 341 (378)
T ss_pred CCCCCCCCCCCH
Confidence 489999999963
No 24
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=31.49 E-value=1.1e+02 Score=23.06 Aligned_cols=66 Identities=23% Similarity=0.230 Sum_probs=48.6
Q ss_pred cccHHHHHHHHHHHcCChHHHHHHHhcCCchhhHH-HHhHHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 039464 78 ELSCVEALSAALIICGEEETANLLLGKFKWGHAFL-SLNRELLKAYSKCENSADIISVQNDWLSQQS 143 (192)
Q Consensus 78 kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~Fl-~LN~elLe~Y~~c~~~~Ev~~~q~~yl~~~~ 143 (192)
-+++++.++.++.=.|..+.|..++..-==-+.|- .+.+.++..|.+..+..+.+++=+.|-....
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 67899999999999999999888765432223332 3667789999999999999998888766554
No 25
>PF09400 DUF2002: Protein of unknown function (DUF2002); InterPro: IPR018994 This entry represents a group of putative cytoplasmic proteins. The structure of these proteins form an antiparallel beta sheet and contain some alpha helical regions. ; PDB: 2G7J_A.
Probab=31.47 E-value=14 Score=29.62 Aligned_cols=32 Identities=31% Similarity=0.430 Sum_probs=16.2
Q ss_pred CCCcccch-hhhhCCCCCCCcccccHHHHHHHH
Q 039464 57 SAPRLLPW-LVAANPVNYGRPCELSCVEALSAA 88 (192)
Q Consensus 57 ~~~R~LP~-LvAANPVNYGKP~kLscvEAlAAa 88 (192)
.+.+..|. |..++|..||-|...||=+||.-=
T Consensus 73 ~~Y~~FPl~L~ge~~~~YGIphGFsSR~~L~~y 105 (111)
T PF09400_consen 73 DHYREFPLYLAGEQPEHYGIPHGFSSRMALERY 105 (111)
T ss_dssp SS---S----SSSS--EEE-EE--S-HHHHHHH
T ss_pred HHHhcCCccccCCCcccccCCcCcchHHHHHHH
Confidence 35555665 999999999999999999888643
No 26
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.08 E-value=70 Score=27.78 Aligned_cols=47 Identities=34% Similarity=0.472 Sum_probs=24.8
Q ss_pred cccchhhhhCCCCCCCcccccHHHHHHHHHHHcCChHHHHHHHhcCCchhhHHHHhHHHHHHHhcCCC
Q 039464 60 RLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCEN 127 (192)
Q Consensus 60 R~LP~LvAANPVNYGKP~kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~Fl~LN~elLe~Y~~c~~ 127 (192)
-.||-|+. +| |=..| ||+ =|||||+--... |-+.=++..+.||.-.+
T Consensus 105 tfLPQLL~-YP-Np~DP--LN~---eAAal~l~~~~~--------------Y~~~v~eY~~kYA~~~~ 151 (189)
T KOG0416|consen 105 TFLPQLLR-YP-NPSDP--LNG---EAAALYLRDPEE--------------YEEKVKEYIKKYATPEA 151 (189)
T ss_pred HHhHHHhc-CC-CCCCC--ccc---HHHHHHhcCHHH--------------HHHHHHHHHHHhcChhh
Confidence 34666442 34 33334 343 277887754333 33344677888876543
No 27
>PF04252 RNA_Me_trans: Predicted SAM-dependent RNA methyltransferase; InterPro: IPR007364 This family of proteins are predicted to be alpha/beta-knot SAM-dependent RNA methyltransferases [].
Probab=30.95 E-value=33 Score=29.83 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=19.3
Q ss_pred CCcccEEeCCCCCccCCcccHH
Q 039464 8 SGFGGIVLSPVGTHCVSKEDYS 29 (192)
Q Consensus 8 ~~f~GIVLsP~~~~~lSp~D~~ 29 (192)
.+-+-++|+|.|++.|||+|.+
T Consensus 61 ~~~~VcLLDP~A~~~L~PeD~~ 82 (196)
T PF04252_consen 61 DKSRVCLLDPAAEKELSPEDGE 82 (196)
T ss_pred CcCCEEEeCCCCCCCCCccccC
Confidence 4557899999999999999976
No 28
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=30.90 E-value=23 Score=18.85 Aligned_cols=15 Identities=40% Similarity=0.539 Sum_probs=9.0
Q ss_pred eEEEecccccccccc
Q 039464 36 LAVVDCSWARLGDVP 50 (192)
Q Consensus 36 laVIDCSW~~l~~~~ 50 (192)
+..+|.|++++..+|
T Consensus 3 L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 3 LRTLDLSNNRLTSLP 17 (17)
T ss_dssp -SEEEETSS--SSE-
T ss_pred cCEEECCCCCCCCCc
Confidence 567899999987765
No 29
>PRK08534 pyruvate ferredoxin oxidoreductase subunit gamma; Reviewed
Probab=30.01 E-value=58 Score=26.56 Aligned_cols=84 Identities=17% Similarity=0.121 Sum_probs=44.1
Q ss_pred HHHhcCeEEEecccccccccccccccCCCCcccchhhhhCCCCCCCcccccHHHHHHHHHHHcC-ChHH-HHH-HHhcCC
Q 039464 30 LIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICG-EEET-ANL-LLGKFK 106 (192)
Q Consensus 30 ii~~~GlaVIDCSW~~l~~~~f~k~~~~~~R~LP~LvAANPVNYGKP~kLscvEAlAAaLyI~G-~~~~-A~~-lL~~Fk 106 (192)
.+...|+.|+|.+|..- + ++...+ ..--.+|+---|.=+ .|++.. |.+ ++.|.+.++| ...+ .++ |-++|
T Consensus 86 ~l~~gg~vi~ns~~~~~-~-~~~~~~-~~~~~vp~~~iA~~~-~g~~~~-N~v-~lGa~~~l~~~~~~e~l~~~i~~~f- 158 (181)
T PRK08534 86 GLKKDGIIIINTTKDPE-D-LKYDTK-AKVYTIDATKIALDV-LGVPIV-NTT-MLGAFAGATGEVSLESLKKAILERF- 158 (181)
T ss_pred CcCCCcEEEEECCCChH-H-HhhhcC-CEEEEEeHHHHHHHH-cCCcch-hHH-HHHHHHHHcCCCCHHHHHHHHHHHh-
Confidence 35678999999877631 1 111101 111224552222111 255554 665 7777777788 4332 233 33456
Q ss_pred chhhHHHHhHHHHHH
Q 039464 107 WGHAFLSLNRELLKA 121 (192)
Q Consensus 107 WG~~Fl~LN~elLe~ 121 (192)
+..+++.|...++.
T Consensus 159 -~~k~~e~N~~A~~~ 172 (181)
T PRK08534 159 -PGKLGEKNAEAVEK 172 (181)
T ss_pred -chHHHHHHHHHHHH
Confidence 33499999987763
No 30
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=29.28 E-value=55 Score=34.37 Aligned_cols=89 Identities=30% Similarity=0.534 Sum_probs=54.1
Q ss_pred cccCCCCcccEEeCCCCCccCCcccHHHHHhcCeEEEecccccccccccccccCCCCcccchhhhh---CCCCCCCcc--
Q 039464 3 ELRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAA---NPVNYGRPC-- 77 (192)
Q Consensus 3 ~lr~~~~f~GIVLsP~~~~~lSp~D~~ii~~~GlaVIDCSW~~l~~~~f~k~~~~~~R~LP~LvAA---NPVNYGKP~-- 77 (192)
.|++.+.|+.++++|.|. |..+..+.|+.|||. + .||...+ ..+-+-||-||- || +=.||+
T Consensus 20 sl~v~~~~~a~si~p~gr------di~lAsr~gl~i~dl-----d-~p~~ppr-~l~h~tpw~vad~qws~-h~a~~~wi 85 (1081)
T KOG0309|consen 20 SLKVDGGFNAVSINPSGR------DIVLASRQGLYIIDL-----D-DPFTPPR-WLHHITPWQVADVQWSP-HPAKPYWI 85 (1081)
T ss_pred EEEecCcccceeeccccc------hhhhhhhcCeEEEec-----c-CCCCCce-eeeccCcchhcceeccc-CCCCceeE
Confidence 477889999999999875 555667899999997 2 3655444 344455776664 44 455555
Q ss_pred -cccHHHHHHHHHHHcCChHHHHHHHhcCCchhh
Q 039464 78 -ELSCVEALSAALIICGEEETANLLLGKFKWGHA 110 (192)
Q Consensus 78 -kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~ 110 (192)
.-|.--|++--| .--.++| .+.+.|||+
T Consensus 86 Vsts~qkaiiwnl--A~ss~~a---Ief~lhghs 114 (1081)
T KOG0309|consen 86 VSTSNQKAIIWNL--AKSSSNA---IEFVLHGHS 114 (1081)
T ss_pred EecCcchhhhhhh--hcCCccc---eEEEEecCc
Confidence 233333443222 2223333 456788875
No 31
>PF11427 HTH_Tnp_Tc3_1: Tc3 transposase; PDB: 1U78_A 1TC3_C.
Probab=29.08 E-value=26 Score=24.16 Aligned_cols=10 Identities=50% Similarity=0.949 Sum_probs=7.6
Q ss_pred hhhCCCCCCC
Q 039464 66 VAANPVNYGR 75 (192)
Q Consensus 66 vAANPVNYGK 75 (192)
...||+|||.
T Consensus 40 yl~dP~~ygt 49 (50)
T PF11427_consen 40 YLKDPVNYGT 49 (50)
T ss_dssp HHHSCCCTT-
T ss_pred HhcChhhccC
Confidence 4579999994
No 32
>PRK12372 ribonuclease III; Reviewed
Probab=28.83 E-value=77 Score=30.51 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHHcCChHHHHHHHhcCCchh
Q 039464 80 SCVEALSAALIICGEEETANLLLGKFKWGH 109 (192)
Q Consensus 80 scvEAlAAaLyI~G~~~~A~~lL~~FkWG~ 109 (192)
.++|||.+|+|+=|-.+.+..++.+| |..
T Consensus 111 DvfEALIGAIYLDsG~e~a~~fV~~l-l~p 139 (413)
T PRK12372 111 DAFEAIIGAVFLDGGFEAAQGVIKRL-YVP 139 (413)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH-HHH
Confidence 57999999999998888999888877 443
No 33
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=28.51 E-value=74 Score=18.38 Aligned_cols=24 Identities=33% Similarity=0.250 Sum_probs=18.9
Q ss_pred ccHHHHHHHHHHHcCChHHHHHHH
Q 039464 79 LSCVEALSAALIICGEEETANLLL 102 (192)
Q Consensus 79 LscvEAlAAaLyI~G~~~~A~~lL 102 (192)
++|.--||.+++-.|..++|..++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~ 25 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELL 25 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHH
Confidence 356777899999999999998774
No 34
>PF02778 tRNA_int_endo_N: tRNA intron endonuclease, N-terminal domain; InterPro: IPR006678 This entry represents a 2-layer alpha/beta domain found at the N-terminal in homotetrameric tRNA-intron endonucleases [], and as domains 1 (N-terminal) and 3 in the homodimeric enzymes []. tRNA-intron endonucleases (3.1.27.9 from EC) remove tRNA introns by cleaving pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-hydroxyl termini []. These enzymes recognise a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp []. Although homotetrameric enzymes contain four active sites, only two participate in the cleavage, and should therefore, be considered as a dimer of dimers.; GO: 0000213 tRNA-intron endonuclease activity, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1A79_D 2CV8_A 3P1Z_B 3AJV_B 3IEY_A 2ZYZ_D 2GJW_D 1R0V_A 3P1Y_C 1R11_B ....
Probab=27.51 E-value=36 Score=24.30 Aligned_cols=18 Identities=33% Similarity=0.095 Sum_probs=13.4
Q ss_pred CCCCcccccHHHHHHHHH
Q 039464 72 NYGRPCELSCVEALSAAL 89 (192)
Q Consensus 72 NYGKP~kLscvEAlAAaL 89 (192)
.-+++..||-+||+.-+.
T Consensus 31 ~~~~~L~LslvEa~YL~~ 48 (67)
T PF02778_consen 31 LDDERLQLSLVEALYLLE 48 (67)
T ss_dssp CETSCEEEEHHHHHHHHH
T ss_pred CCCCcEEEeHHHHHHHHh
Confidence 334477999999987654
No 35
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=27.50 E-value=37 Score=23.75 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=31.9
Q ss_pred CCCCCCCcccccHHHHHHHHHHHcCChHHHHHHHhcCCchhhHHHHh
Q 039464 69 NPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLN 115 (192)
Q Consensus 69 NPVNYGKP~kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~Fl~LN 115 (192)
||-++ .-+.+-..||+|+...+++.... .+-..|.+|.+++..+
T Consensus 4 n~~~~-~~~~~r~~E~~a~G~~vi~~~~~--~~~~~~~~~~~~~~~~ 47 (92)
T PF13524_consen 4 NPSRS-DGPNMRIFEAMACGTPVISDDSP--GLREIFEDGEHIITYN 47 (92)
T ss_pred eCCCC-CCCchHHHHHHHCCCeEEECChH--HHHHHcCCCCeEEEEC
Confidence 56333 55777899999999998888775 4445599996665543
No 36
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=26.45 E-value=45 Score=31.79 Aligned_cols=91 Identities=20% Similarity=0.318 Sum_probs=53.2
Q ss_pred cCCCCcccEEeCCCCCc--cCCcccHHHHHhcCeEEEecccccccccccccccCCCCcccchhhhhCCCCCCCcccccHH
Q 039464 5 RVSSGFGGIVLSPVGTH--CVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCV 82 (192)
Q Consensus 5 r~~~~f~GIVLsP~~~~--~lSp~D~~ii~~~GlaVIDCSW~~l~~~~f~k~~~~~~R~LP~LvAANPVNYGKP~kLscv 82 (192)
|.+-...+|+|+|++.- +|+...|+ .|+++||.-=-.-+=.-|..=.-.+...+|+ ++| .--
T Consensus 176 r~gl~v~~i~l~plAsa~a~L~~dEke----lGv~lIDiG~GTTdIai~~~G~l~~~~~ipv--gG~----------~vT 239 (418)
T COG0849 176 RAGLKVDNIVLEPLASALAVLTEDEKE----LGVALIDIGGGTTDIAIYKNGALRYTGVIPV--GGD----------HVT 239 (418)
T ss_pred HhCCCeeeEEEehhhhhhhccCcccHh----cCeEEEEeCCCcEEEEEEECCEEEEEeeEee--Ccc----------HHH
Confidence 34556778999999987 89988887 7999999844332211221100012222332 222 233
Q ss_pred HHHHHHHHHcCChHHHHHHHhcCCchhhHHHHh
Q 039464 83 EALSAALIICGEEETANLLLGKFKWGHAFLSLN 115 (192)
Q Consensus 83 EAlAAaLyI~G~~~~A~~lL~~FkWG~~Fl~LN 115 (192)
.++|..|-+ -.+.|++| |.++|+.+..+.
T Consensus 240 ~DIa~~l~t--~~~~AE~i--K~~~g~a~~~~~ 268 (418)
T COG0849 240 KDIAKGLKT--PFEEAERI--KIKYGSALISLA 268 (418)
T ss_pred HHHHHHhCC--CHHHHHHH--HHHcCccccCcC
Confidence 555555533 36778888 666777777764
No 37
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=26.43 E-value=89 Score=20.32 Aligned_cols=26 Identities=15% Similarity=0.434 Sum_probs=22.3
Q ss_pred HHhHHHHHHHhcCCCHHHHHHHHHHH
Q 039464 113 SLNRELLKAYSKCENSADIISVQNDW 138 (192)
Q Consensus 113 ~LN~elLe~Y~~c~~~~Ev~~~q~~y 138 (192)
.-|.+|-+.+..|+|.++|+++-+++
T Consensus 14 ~~d~~l~~~l~~~~~~~e~~~lA~~~ 39 (49)
T PF07862_consen 14 KSDPELREQLKACQNPEEVVALAREA 39 (49)
T ss_pred hcCHHHHHHHHhcCCHHHHHHHHHHc
Confidence 45888999999999999999987664
No 38
>PF09361 Phasin_2: Phasin protein; InterPro: IPR018968 Phasins (or granule-associate proteins) are surface proteins found covering Polyhydroxyalkanoate (PHA) storage granules in bacteria. Polyhydroxyalkanoates are linear polyesters produced by bacterial fermentation of sugar or lipids for the purpose of storing carbon and energy, and are accumulated as intracellular granules by many bacteria under unfavorable conditions, enhancing their fitness and stress resistance []. The layer of phasins stabilises the granules and prevents coalescence of separated granules in the cytoplasm and nonspecific binding of other proteins to the hydrophobic surfaces of the granules. For example, in Ralstonia eutropha (strain ATCC 17699/H16/DSM 428/Stanier 337) (Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)), the major surface protein of polyhydroxybutyrate (PHB) granules is phasin PhaP1(Reu), which occurs along with three homologues (PhaP2, PhaP3, and PhaP4) that have the capacity to bind to PHB granules but are present at minor levels [, ]. These four phasins lack a highly conserved domain but share homologous hydrophobic regions. This entry describes a group of phasins that associate with polyhydroxyalkanoate (PHA) inclusions, the most common of which consist of polyhydroxybutyrate (PHB).
Probab=25.74 E-value=1.8e+02 Score=20.32 Aligned_cols=34 Identities=6% Similarity=0.214 Sum_probs=27.6
Q ss_pred hhHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 039464 109 HAFLSLNRELLKAYSKCENSADIISVQNDWLSQQ 142 (192)
Q Consensus 109 ~~Fl~LN~elLe~Y~~c~~~~Ev~~~q~~yl~~~ 142 (192)
...+.-+-+.++.=..|++..|++.+|.+|+...
T Consensus 38 ~~~~~~~~~~~~~l~~a~~~~e~~~~Q~~~~~~~ 71 (102)
T PF09361_consen 38 RQNVEEAFAQAQQLASAKDPQELVALQSEFAQEQ 71 (102)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3445556667888889999999999999999765
No 39
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=24.81 E-value=60 Score=29.97 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=25.4
Q ss_pred cEEeCCCCCccCCcccHHHHHhcCeEEEecccccccc
Q 039464 12 GIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGD 48 (192)
Q Consensus 12 GIVLsP~~~~~lSp~D~~ii~~~GlaVIDCSW~~l~~ 48 (192)
-+|++.. -+||+.++.++++|+.|||.+=-.+.+
T Consensus 69 ~VIfsAH---GVs~~v~~~a~~r~l~v~DATCPlVtK 102 (294)
T COG0761 69 TVIFSAH---GVSPAVREEAKERGLKVIDATCPLVTK 102 (294)
T ss_pred EEEEECC---CCCHHHHHHHHHCCCEEEecCCCcchH
Confidence 3444444 489999999999999999987544433
No 40
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=24.66 E-value=80 Score=23.24 Aligned_cols=62 Identities=27% Similarity=0.330 Sum_probs=34.1
Q ss_pred cch-hhhhCCCCCCCcccccHHHHHHHHHHHcCChHHHHHHHh-----cCCchhhHHHHhHHHHHHHhcCCCHHHHHHH
Q 039464 62 LPW-LVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLG-----KFKWGHAFLSLNRELLKAYSKCENSADIISV 134 (192)
Q Consensus 62 LP~-LvAANPVNYGKP~kLscvEAlAAaLyI~G~~~~A~~lL~-----~FkWG~~Fl~LN~elLe~Y~~c~~~~Ev~~~ 134 (192)
+|| ++++|| ++...||. -+|==-|+..+....|. .|..|.+|-+-=+++.+.|.. ..+|..+
T Consensus 3 pPf~~~~G~~---a~~~GlN~-----vGLrR~Gfs~~~i~~l~~ayr~l~~~~~~~~~a~~~l~~~~~~---~~~v~~~ 70 (83)
T PF13720_consen 3 PPFMLVAGNP---ARIRGLNL-----VGLRRRGFSKEEISALRRAYRILFRSGLTLEEALEELEEEYPD---SPEVREI 70 (83)
T ss_dssp -TTEEEETTT---TEEEEE-H-----HHHHHTTS-HHHHHHHHHHHHHHHTSSS-HHHHHHHHHHHTTS---CHHHHHH
T ss_pred CCeEEecCCc---cEEeeeeH-----HHHHHcCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccC---CHHHHHH
Confidence 588 788887 57888883 34555555555444332 366776666655555555654 4444444
No 41
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=24.09 E-value=1e+02 Score=22.96 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=26.5
Q ss_pred hhhCC-CCCCCcc---cccHHHHHHHHHHHcCChHHHHHHHhcCCc
Q 039464 66 VAANP-VNYGRPC---ELSCVEALSAALIICGEEETANLLLGKFKW 107 (192)
Q Consensus 66 vAANP-VNYGKP~---kLscvEAlAAaLyI~G~~~~A~~lL~~FkW 107 (192)
+.-|| |-+|||| ..=+|+.+...|- .|...+ +||.-|.|
T Consensus 13 I~~~P~i~gGkP~I~GtRI~V~~Il~~l~-~G~s~e--eil~dyp~ 55 (79)
T COG2442 13 IVITPGICGGKPCIRGTRIPVWDILEMLA-AGESIE--EILADYPD 55 (79)
T ss_pred eEeCCcccCCcceEeCceecHHHHHHHHH-CCCCHH--HHHHhCCC
Confidence 45555 6789999 5556777777766 777777 55555543
No 42
>TIGR01419 nitro_reg_IIA PTS IIA-like nitrogen-regulatory protein PtsN. Members of this family are found in Proteobacteria, Chlamydia, and the spirochete Treponema pallidum.
Probab=23.58 E-value=48 Score=25.37 Aligned_cols=62 Identities=13% Similarity=0.266 Sum_probs=38.1
Q ss_pred hhhhhCCCCCC----CcccccHHHHHHHHHHHcCChHHHHHHHhcCCchhhHHHHhHHHHHHHhcCCCHHHHHHHH
Q 039464 64 WLVAANPVNYG----RPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQ 135 (192)
Q Consensus 64 ~LvAANPVNYG----KP~kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~Fl~LN~elLe~Y~~c~~~~Ev~~~q 135 (192)
++.-.+||.|+ ++.++- +.|+.-....+..|..+++=-.++ .|.+.++.-.+| |.+++.+.-
T Consensus 78 ~~~l~~pi~~~~~~~~~V~~v--------~~l~~~~~~~~~~l~~l~~l~~~l-~~~~~~~~L~~~-~~~~i~~~l 143 (145)
T TIGR01419 78 FIRLDAPVDFDALDGKPVDLL--------FALLVPENATAEHLEALSRIARKL-SDKTICRRLRAA-SAEEIYQIL 143 (145)
T ss_pred EEEcCCCcCCCCCCCCcccEE--------EEEEecCCCcHHHHHHHHHHHHHH-cCHHHHHHHHhC-CHHHHHHHH
Confidence 35677999996 455543 223222222234444455555666 677789999999 999887753
No 43
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=22.77 E-value=50 Score=32.19 Aligned_cols=12 Identities=33% Similarity=0.576 Sum_probs=5.7
Q ss_pred CcCCCCCCCCCc
Q 039464 179 NHMNLLESDGEE 190 (192)
Q Consensus 179 n~~~~~~~~~~~ 190 (192)
|...|.++|+|+
T Consensus 105 nE~GFAdSDDEd 116 (458)
T PF10446_consen 105 NEAGFADSDDED 116 (458)
T ss_pred cccccccccccc
Confidence 334555554443
No 44
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=22.74 E-value=46 Score=30.57 Aligned_cols=69 Identities=16% Similarity=0.148 Sum_probs=37.9
Q ss_pred cHHHHHhcCeEEEecccccccccccccccCCCCcccchh------hhhCCCCCCCcccccHHHHHHHHHHHcCChHH
Q 039464 27 DYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWL------VAANPVNYGRPCELSCVEALSAALIICGEEET 97 (192)
Q Consensus 27 D~~ii~~~GlaVIDCSW~~l~~~~f~k~~~~~~R~LP~L------vAANPVNYGKP~kLscvEAlAAaLyI~G~~~~ 97 (192)
..+.+.+.||.+|||||.-....-..+. ....|.+|=- .+..|-+| -+..|-+.|.||..+=-+|-...
T Consensus 12 v~~~~~~~~~~iLDaSw~~~~~~~~~~~-e~~~~hipga~~fdld~~~~~s~~-~~~~lp~~e~Fa~y~~~lGi~n~ 86 (286)
T KOG1529|consen 12 VMENLGNHGLRILDASWYFPPLRRIAEF-EFLERHIPGASHFDLDIISYPSSP-YRHMLPTAEHFAEYASRLGVDNG 86 (286)
T ss_pred HHHhCcCCCeEEEeeeeecCchhhhhhh-hhhhccCCCceeeeccccccCCCc-ccccCccHHHHHHHHHhcCCCCC
Confidence 4455666899999999965433211111 1233333321 12223222 34577788888888877775443
No 45
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=22.41 E-value=71 Score=32.20 Aligned_cols=11 Identities=18% Similarity=0.320 Sum_probs=4.8
Q ss_pred HHhHHHHHHHh
Q 039464 113 SLNRELLKAYS 123 (192)
Q Consensus 113 ~LN~elLe~Y~ 123 (192)
.+=.+|..-|.
T Consensus 554 ~~l~dl~~c~~ 564 (784)
T PF04931_consen 554 DVLDDLQICYE 564 (784)
T ss_pred HHHHHHHHHHH
Confidence 33344544443
No 46
>PRK10203 hypothetical protein; Provisional
Probab=22.24 E-value=2.3e+02 Score=22.90 Aligned_cols=54 Identities=17% Similarity=0.022 Sum_probs=36.4
Q ss_pred CCCCcccccHHHHHHHHHHHcCChHHHHHHHhcCCchhhHHHHhHHHH---HHHhcCCCHHHH
Q 039464 72 NYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELL---KAYSKCENSADI 131 (192)
Q Consensus 72 NYGKP~kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~Fl~LN~elL---e~Y~~c~~~~Ev 131 (192)
-.|||..+.-- -++=.....+..||..-+.-+.+++|.+++. +.++.|.+..+-
T Consensus 26 G~GKPL~~~d~------~~~p~e~r~~~rilknag~lP~el~LrKE~~~l~~~l~~~~d~~~~ 82 (122)
T PRK10203 26 GSGEPLILDDD------SHVPPELRAGYRLLKNAGCLPPELEQRREAIQLLDLLKGIREDDPQ 82 (122)
T ss_pred CCCCCCCCccC------CCCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHhccccHH
Confidence 57888765421 0111112234568888899999999999988 889999866544
No 47
>TIGR01985 phasin_2 phasin. Members of the seed for this model all contain the rest of the components believed to be essential for this system (see the "polyhydroxyalkanoic acid synthesis" property in the GenPropDB). Members of this family score below trusted to another phasin model, TIGR01841 and together may represent a subfamily or broader equivalog.
Probab=22.14 E-value=1.7e+02 Score=22.60 Aligned_cols=37 Identities=11% Similarity=0.254 Sum_probs=30.2
Q ss_pred CchhhHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 039464 106 KWGHAFLSLNRELLKAYSKCENSADIISVQNDWLSQQ 142 (192)
Q Consensus 106 kWG~~Fl~LN~elLe~Y~~c~~~~Ev~~~q~~yl~~~ 142 (192)
.....=++-+-+.++.-..++|..|++++|.+|+...
T Consensus 55 ~~~k~~~e~~~~~~~~L~~aKsp~e~~elQs~~~~~~ 91 (112)
T TIGR01985 55 EFMQANAEAAFDFTQKLVGAKDPSEAFEIQSEFLRKQ 91 (112)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3455556666778889999999999999999999764
No 48
>KOG3569 consensus RAS signaling inhibitor ST5 [Signal transduction mechanisms]
Probab=21.07 E-value=53 Score=31.64 Aligned_cols=45 Identities=22% Similarity=0.438 Sum_probs=35.1
Q ss_pred HHHHhcCCchhhHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHhccc
Q 039464 99 NLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWLSQQSR 144 (192)
Q Consensus 99 ~~lL~~FkWG~~Fl~LN~elLe~Y~~c~~~~Ev~~~q~~yl~~~~~ 144 (192)
-.||=.|.|-|+||-+=-+-|=.|- |.-.-=++.++...+++.+.
T Consensus 221 ~ALLYPm~WqH~yIPvLPpsLlD~v-CaPmPyLIGv~~s~lerv~~ 265 (425)
T KOG3569|consen 221 AALLYPMSWQHTYIPVLPPSLLDYV-CAPMPYLIGVHSSLLERVRE 265 (425)
T ss_pred HHHhhhhhhheeeeccCCHHHHhHh-cCCcceeecchHHHHHHHhh
Confidence 3556699999999998877777786 55566788888888886554
No 49
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=20.60 E-value=79 Score=28.51 Aligned_cols=30 Identities=30% Similarity=0.599 Sum_probs=19.5
Q ss_pred cEEeCCCCCccCCcccHHHHHhcCeEEEecccc
Q 039464 12 GIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWA 44 (192)
Q Consensus 12 GIVLsP~~~~~lSp~D~~ii~~~GlaVIDCSW~ 44 (192)
.+|+...| ++|+.++.++++|+.|||++=-
T Consensus 66 ~ViirAHG---v~~~~~~~l~~~g~~viDaTCP 95 (281)
T PF02401_consen 66 TVIIRAHG---VPPEVYEELKERGLEVIDATCP 95 (281)
T ss_dssp EEEE-TT------HHHHHHHHHTTEEEEE---H
T ss_pred EEEEeCCC---CCHHHHHHHHHcCCEEEECCCh
Confidence 46666655 7899999999999999998753
No 50
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=20.53 E-value=92 Score=28.41 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=24.5
Q ss_pred cEEeCCCCCccCCcccHHHHHhcCeEEEeccccc
Q 039464 12 GIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWAR 45 (192)
Q Consensus 12 GIVLsP~~~~~lSp~D~~ii~~~GlaVIDCSW~~ 45 (192)
.+|+...| +||+-++.++++|+.|||++=-.
T Consensus 68 ~ViirAHG---v~~~~~~~~~~~g~~viDaTCP~ 98 (298)
T PRK01045 68 IVIFSAHG---VSPAVREEAKERGLTVIDATCPL 98 (298)
T ss_pred EEEEeCCC---CCHHHHHHHHHCCCeEEeCCCcc
Confidence 45655555 78999999999999999987533
No 51
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=20.52 E-value=99 Score=27.21 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHHcCChHHHHHHHh
Q 039464 80 SCVEALSAALIICGEEETANLLLG 103 (192)
Q Consensus 80 scvEAlAAaLyI~G~~~~A~~lL~ 103 (192)
.++||+.||+|+-+-.+.|+.++.
T Consensus 121 D~~EAligAiylD~g~~~~~~~i~ 144 (235)
T COG0571 121 DAFEALIGAIYLDSGLEAARKFIL 144 (235)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHH
Confidence 489999999999988888888754
No 52
>PF12854 PPR_1: PPR repeat
Probab=20.47 E-value=1.3e+02 Score=18.06 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHHcCChHHHHHHHhc
Q 039464 80 SCVEALSAALIICGEEETANLLLGK 104 (192)
Q Consensus 80 scvEAlAAaLyI~G~~~~A~~lL~~ 104 (192)
.+--+|..++.-.|..++|.+|++.
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3456788899999999999999875
No 53
>COG5490 Uncharacterized conserved protein [Function unknown]
Probab=20.43 E-value=1.2e+02 Score=25.63 Aligned_cols=25 Identities=4% Similarity=0.219 Sum_probs=22.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhc
Q 039464 118 LLKAYSKCENSADIISVQNDWLSQQ 142 (192)
Q Consensus 118 lLe~Y~~c~~~~Ev~~~q~~yl~~~ 142 (192)
-++.|+..++.+|+++.|..|+.+.
T Consensus 93 ~aesl~aaks~qElvelQTafark~ 117 (158)
T COG5490 93 HAESLRAAKSLQELVELQTAFARKS 117 (158)
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHH
Confidence 5889999999999999999999764
No 54
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=20.33 E-value=94 Score=28.11 Aligned_cols=31 Identities=32% Similarity=0.538 Sum_probs=24.6
Q ss_pred cEEeCCCCCccCCcccHHHHHhcCeEEEeccccc
Q 039464 12 GIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWAR 45 (192)
Q Consensus 12 GIVLsP~~~~~lSp~D~~ii~~~GlaVIDCSW~~ 45 (192)
.+|++..| +||+-++.++++|+.|||++=-.
T Consensus 71 ~ViirAHG---v~~~~~~~~~~~g~~viDaTCP~ 101 (281)
T PRK12360 71 VVIIRSHG---VSKKVYKDLKDKGLEIIDATCPF 101 (281)
T ss_pred EEEEeCCC---CCHHHHHHHHHCCCeEEeCCCcc
Confidence 46665555 78999999999999999987533
No 55
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=20.18 E-value=39 Score=31.38 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=24.9
Q ss_pred CcccEEeCCCCCccCCcccH----HHHHhcC--eEEEeccccc
Q 039464 9 GFGGIVLSPVGTHCVSKEDY----SLIKRKG--LAVVDCSWAR 45 (192)
Q Consensus 9 ~f~GIVLsP~~~~~lSp~D~----~ii~~~G--laVIDCSW~~ 45 (192)
+-..|.+-.-+.+.+..-|. ++++++| +.|||.+|.-
T Consensus 140 ~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~at 182 (386)
T PF01053_consen 140 NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFAT 182 (386)
T ss_dssp TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTH
T ss_pred cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccc
Confidence 45567777777777777784 4567787 6778999975
No 56
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=20.08 E-value=1.7e+02 Score=25.63 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=14.0
Q ss_pred HHhcCeEEEecccccccc
Q 039464 31 IKRKGLAVVDCSWARLGD 48 (192)
Q Consensus 31 i~~~GlaVIDCSW~~l~~ 48 (192)
..+.|+..||+|.+-+.+
T Consensus 204 A~~aGa~~vd~s~~G~G~ 221 (266)
T cd07944 204 AIELGVEIIDATVYGMGR 221 (266)
T ss_pred HHHcCCCEEEEecccCCC
Confidence 345799999999887665
Done!