Query 039464
Match_columns 192
No_of_seqs 127 out of 311
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 16:56:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039464.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039464hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gsl_A Hypothetical protein; a 60.8 5.9 0.0002 31.0 3.0 25 80-104 100-124 (137)
2 1u61_A Hypothetical protein; s 58.1 5.8 0.0002 31.1 2.5 25 80-104 100-124 (138)
3 3o2r_A Ribonuclease III; struc 53.1 5.5 0.00019 31.7 1.7 25 80-104 137-161 (170)
4 3utn_X Thiosulfate sulfurtrans 43.5 15 0.00053 31.9 3.1 70 21-94 28-110 (327)
5 1o0w_A Ribonuclease III, RNAse 42.5 9.8 0.00034 31.5 1.7 30 76-105 134-164 (252)
6 2a11_A Ribonuclease III, RNAse 39.9 11 0.00039 30.7 1.7 30 76-105 117-147 (242)
7 3n3w_A Ribonuclease III; nucle 39.8 11 0.00039 31.2 1.7 26 80-105 137-162 (248)
8 2nug_A Ribonuclease III, RNAse 38.0 13 0.00045 29.9 1.7 25 80-104 107-133 (221)
9 2pm7_A Protein WEB1, protein t 29.7 1.4E+02 0.0047 26.7 7.1 60 76-144 139-201 (399)
10 3c4b_A Endoribonuclease dicer; 27.3 30 0.001 28.4 2.2 24 80-103 159-184 (265)
11 3dnf_A ISPH, LYTB, 4-hydroxy-3 23.0 55 0.0019 28.7 3.2 30 12-44 68-97 (297)
12 3dxi_A Putative aldolase; TIM 22.6 1.2E+02 0.004 26.3 5.1 18 31-48 207-224 (320)
13 3szu_A ISPH, 4-hydroxy-3-methy 21.3 62 0.0021 28.8 3.2 29 12-43 80-108 (328)
14 3olh_A MST, 3-mercaptopyruvate 20.9 44 0.0015 27.8 2.1 29 16-44 17-50 (302)
No 1
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=60.76 E-value=5.9 Score=31.03 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHHcCChHHHHHHHhc
Q 039464 80 SCVEALSAALIICGEEETANLLLGK 104 (192)
Q Consensus 80 scvEAlAAaLyI~G~~~~A~~lL~~ 104 (192)
+..|||.++||+.|-.+.+.+++.+
T Consensus 100 t~fEALiGaLYLd~~~erl~~ll~~ 124 (137)
T 2gsl_A 100 TALEAIIGAMYLLKKEEEIKKIINI 124 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4689999999999999999988764
No 2
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1
Probab=58.05 E-value=5.8 Score=31.06 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHHcCChHHHHHHHhc
Q 039464 80 SCVEALSAALIICGEEETANLLLGK 104 (192)
Q Consensus 80 scvEAlAAaLyI~G~~~~A~~lL~~ 104 (192)
+..|||.+|||+.|-.+.+++++.+
T Consensus 100 ~~fEALiGalYLd~g~er~~~~i~~ 124 (138)
T 1u61_A 100 TAFEALIGYHHLLNNRERLDEIVYK 124 (138)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4579999999999999999998753
No 3
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=53.08 E-value=5.5 Score=31.65 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=21.3
Q ss_pred cHHHHHHHHHHHcCChHHHHHHHhc
Q 039464 80 SCVEALSAALIICGEEETANLLLGK 104 (192)
Q Consensus 80 scvEAlAAaLyI~G~~~~A~~lL~~ 104 (192)
.++||+.+|+|+-|-.+.|.+++.+
T Consensus 137 d~fEAliGAiylD~G~~~a~~~i~~ 161 (170)
T 3o2r_A 137 DALEAIIGAIHLEAGFEFAKTIALR 161 (170)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 5889999999999878888887654
No 4
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=43.46 E-value=15 Score=31.85 Aligned_cols=70 Identities=11% Similarity=0.211 Sum_probs=37.5
Q ss_pred ccCCcccH-HHHHhcC---eEEEeccccccccc------c-cc--cccCCCCcccchhhhhCCCCCCCcccccHHHHHHH
Q 039464 21 HCVSKEDY-SLIKRKG---LAVVDCSWARLGDV------P-FV--KLRCSAPRLLPWLVAANPVNYGRPCELSCVEALSA 87 (192)
Q Consensus 21 ~~lSp~D~-~ii~~~G---laVIDCSW~~l~~~------~-f~--k~~~~~~R~LP~LvAANPVNYGKP~kLscvEAlAA 87 (192)
+.|||+.. +++.+.. |.+|||||-- ... . +. .|+ ..+.+.+=--+.| +=+-|..|-+.|+|++
T Consensus 28 ~LIsp~~l~~ll~~~~~~rvv~lDasw~l-P~~~r~~~~E~~~~~HIP--GAv~~Dld~~~d~-~~~~ph~LP~~~~f~~ 103 (327)
T 3utn_X 28 DLISPKAFVKLVASEKVHRIVPVDATWYL-PSWKLDNKVDFLTKPRIP--NSIFFDIDAISDK-KSPYPHMFPTKKVFDD 103 (327)
T ss_dssp EEECHHHHHHHHHHCSSSCEEEEECCCCC-GGGCCCHHHHHHHSCBCT--TCEECCTTTSSCT-TSSSTTCCCCHHHHHH
T ss_pred cccCHHHHHHHHhCCCCCcEEEEEecCCC-CCCCCCHHHHHHhhCcCC--CCeeeChHHhcCC-CCCCCCCCcCHHHHHH
Confidence 36888775 4454332 8899999931 111 0 11 122 1222222011223 2234678889999998
Q ss_pred HHHHcCC
Q 039464 88 ALIICGE 94 (192)
Q Consensus 88 aLyI~G~ 94 (192)
++==+|-
T Consensus 104 ~l~~lGI 110 (327)
T 3utn_X 104 AMSNLGV 110 (327)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 8876663
No 5
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=42.54 E-value=9.8 Score=31.48 Aligned_cols=30 Identities=27% Similarity=0.173 Sum_probs=24.1
Q ss_pred cccc-cHHHHHHHHHHHcCChHHHHHHHhcC
Q 039464 76 PCEL-SCVEALSAALIICGEEETANLLLGKF 105 (192)
Q Consensus 76 P~kL-scvEAlAAaLyI~G~~~~A~~lL~~F 105 (192)
|-.| +++||+.+|+|+-|-.+.|..++..+
T Consensus 134 ~~~lad~~EAliGAiyld~g~~~~~~~i~~~ 164 (252)
T 1o0w_A 134 DSILADAFEALLAAIYLDQGYEKIKELFEQE 164 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred ccHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444 68999999999998788888887654
No 6
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=39.86 E-value=11 Score=30.67 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=24.5
Q ss_pred cccc-cHHHHHHHHHHHcCChHHHHHHHhcC
Q 039464 76 PCEL-SCVEALSAALIICGEEETANLLLGKF 105 (192)
Q Consensus 76 P~kL-scvEAlAAaLyI~G~~~~A~~lL~~F 105 (192)
|-.| +++||+.+|+|+-+-.+.+..++..+
T Consensus 117 ~~~lad~~EAliGAiyld~g~~~~~~~i~~~ 147 (242)
T 2a11_A 117 SSILADGMESLLGAIYLQHGMEKAREVILRL 147 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3344 68999999999998888998887765
No 7
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=39.81 E-value=11 Score=31.24 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=22.4
Q ss_pred cHHHHHHHHHHHcCChHHHHHHHhcC
Q 039464 80 SCVEALSAALIICGEEETANLLLGKF 105 (192)
Q Consensus 80 scvEAlAAaLyI~G~~~~A~~lL~~F 105 (192)
.++||+.+|+|+-|-.+.|..++.++
T Consensus 137 d~fEAliGAiyld~G~~~~~~~i~~~ 162 (248)
T 3n3w_A 137 DALEAIIGAIHLEAGFEFAKTIALRL 162 (248)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCChHHHHHHHHHH
Confidence 57899999999998888888887765
No 8
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=37.98 E-value=13 Score=29.91 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHHcCChHH--HHHHHhc
Q 039464 80 SCVEALSAALIICGEEET--ANLLLGK 104 (192)
Q Consensus 80 scvEAlAAaLyI~G~~~~--A~~lL~~ 104 (192)
+++||+.+|+|+-+-.+. +..++.+
T Consensus 107 d~~EAliGAiyld~g~~~~~~~~~i~~ 133 (221)
T 2nug_A 107 DVFEALWAAVYIDSGRDANFTRELFYK 133 (221)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 689999999999976677 8877654
No 9
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=29.67 E-value=1.4e+02 Score=26.68 Aligned_cols=60 Identities=17% Similarity=0.156 Sum_probs=49.2
Q ss_pred cccc-cHHHHHHHHHHHcCChHHHHHH-HhcCCchhhHHHHhHHHHHHHhcCCCHHHH-HHHHHHHHHhccc
Q 039464 76 PCEL-SCVEALSAALIICGEEETANLL-LGKFKWGHAFLSLNRELLKAYSKCENSADI-ISVQNDWLSQQSR 144 (192)
Q Consensus 76 P~kL-scvEAlAAaLyI~G~~~~A~~l-L~~FkWG~~Fl~LN~elLe~Y~~c~~~~Ev-~~~q~~yl~~~~~ 144 (192)
||++ +.+|....-..|+|..+.|-.+ |+.=.|+|.|+ .+.|...+-+ .++|++|+.+...
T Consensus 139 ~~~i~~~~d~~I~~aLl~Gd~e~AV~~cl~~~r~adAll---------LA~~gg~el~~~~vq~~Y~~k~~~ 201 (399)
T 2pm7_A 139 DFSLSGNIEQTISKNLVSGNIKSAVKNSLENDLMMEAMV---------IALDSNNERLKESVKNAYFAKYGS 201 (399)
T ss_dssp CBCCCSHHHHHHHHHHHTTCHHHHHHHHHTTTCHHHHHH---------HHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred CCcCChhHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH---------HHHhcCHHHHHHHHHHHHHHhccc
Confidence 6677 6888888888899999999876 57778999987 4557778888 8999999988764
No 10
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=27.28 E-value=30 Score=28.38 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=18.7
Q ss_pred cHHHHHHHHHHHcCCh--HHHHHHHh
Q 039464 80 SCVEALSAALIICGEE--ETANLLLG 103 (192)
Q Consensus 80 scvEAlAAaLyI~G~~--~~A~~lL~ 103 (192)
.++||+.+|+|+-+-. +.+..++.
T Consensus 159 D~~EAliGAiylD~G~~~~~~~~~i~ 184 (265)
T 3c4b_A 159 DIFESLAGAIYMDSGMSLEVVWQVYY 184 (265)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhhheeeecCCCHHHHHHHHH
Confidence 5799999999998655 66766654
No 11
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=23.03 E-value=55 Score=28.68 Aligned_cols=30 Identities=23% Similarity=0.557 Sum_probs=24.5
Q ss_pred cEEeCCCCCccCCcccHHHHHhcCeEEEecccc
Q 039464 12 GIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWA 44 (192)
Q Consensus 12 GIVLsP~~~~~lSp~D~~ii~~~GlaVIDCSW~ 44 (192)
.+|++..| +||+.++.++++|+.|||++=-
T Consensus 68 ~VIirAHG---v~~~v~~~a~~rgl~iiDATCP 97 (297)
T 3dnf_A 68 TVIIRSHG---IPPEKEEALRKKGLKVIDATCP 97 (297)
T ss_dssp EEEECTTC---CCHHHHHHHHHTTCEEEECCCH
T ss_pred EEEEECCC---CCHHHHHHHHHCCCEEEeCCCc
Confidence 36666665 7899999999999999998753
No 12
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482}
Probab=22.61 E-value=1.2e+02 Score=26.32 Aligned_cols=18 Identities=17% Similarity=0.431 Sum_probs=13.7
Q ss_pred HHhcCeEEEecccccccc
Q 039464 31 IKRKGLAVVDCSWARLGD 48 (192)
Q Consensus 31 i~~~GlaVIDCSW~~l~~ 48 (192)
..+.|+.+||||-+-+.+
T Consensus 207 A~~aGa~~vd~si~GlG~ 224 (320)
T 3dxi_A 207 AIDDGIDFIDATITGMGR 224 (320)
T ss_dssp HHHTTCSEEEEBGGGCSS
T ss_pred HHHhCCCEEEEeccccCC
Confidence 345799999998876654
No 13
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=21.34 E-value=62 Score=28.78 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=24.2
Q ss_pred cEEeCCCCCccCCcccHHHHHhcCeEEEeccc
Q 039464 12 GIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSW 43 (192)
Q Consensus 12 GIVLsP~~~~~lSp~D~~ii~~~GlaVIDCSW 43 (192)
.+|++..| +||+.++.++++|+.|||++=
T Consensus 80 ~VIirAHG---v~~~v~~~a~~rgl~iiDATC 108 (328)
T 3szu_A 80 ILIFSAHG---VSQAVRNEAKSRDLTVFDATC 108 (328)
T ss_dssp EEEECTTC---CCHHHHHHHHHTTCEEEECCC
T ss_pred EEEEECCC---CCHHHHHHHHHCCCEEEECCC
Confidence 36666665 789999999999999999874
No 14
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=20.92 E-value=44 Score=27.79 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=19.8
Q ss_pred CCCCCccCCcccHHHH-Hhc----CeEEEecccc
Q 039464 16 SPVGTHCVSKEDYSLI-KRK----GLAVVDCSWA 44 (192)
Q Consensus 16 sP~~~~~lSp~D~~ii-~~~----GlaVIDCSW~ 44 (192)
.|.....||+++..-. .+. ++.||||.|.
T Consensus 17 ~~~~~~lIs~~~l~~~l~~~~~~~~~~ilDvR~~ 50 (302)
T 3olh_A 17 NLYFQSMVSAQWVAEALRAPRAGQPLQLLDASWY 50 (302)
T ss_dssp ---CCCEECHHHHHHHHHCCCSSCCEEEEECCCC
T ss_pred ccCCCCccCHHHHHHHhcCcCCCCCEEEEEeecC
Confidence 4566778999887544 433 7999999995
Done!