Query 039464
Match_columns 192
No_of_seqs 127 out of 311
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 16:57:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039464.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039464hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u61a_ a.149.1.1 (A:) Hypothe 77.9 0.71 5.2E-05 33.4 3.0 25 80-104 96-120 (127)
2 d1o0wa1 a.149.1.1 (A:-1-167) R 63.2 1.7 0.00012 32.0 2.2 25 80-104 129-153 (169)
3 d2cp8a1 a.5.2.1 (A:8-48) Migra 31.2 9.3 0.00068 23.2 1.4 25 84-123 4-28 (41)
4 d1okga1 c.46.1.2 (A:7-162) 3-m 29.3 17 0.0013 26.5 3.0 73 21-97 8-89 (156)
5 d1o7ja_ c.88.1.1 (A:) Asparagi 29.0 42 0.0031 26.7 5.6 36 7-42 237-275 (325)
6 d1rhsa1 c.46.1.2 (A:1-149) Rho 20.4 44 0.0032 23.4 3.7 73 21-94 8-89 (149)
7 d1a79a2 d.75.1.1 (A:9-82) Tetr 19.8 16 0.0012 24.2 1.0 17 73-89 27-47 (74)
8 d1hlma_ a.1.1.2 (A:) Hemoglobi 18.7 7.1 0.00052 27.8 -1.2 46 19-77 8-53 (158)
9 d1urha1 c.46.1.2 (A:2-148) 3-m 16.5 90 0.0065 21.5 4.6 66 31-97 14-85 (147)
10 d1scta_ a.1.1.2 (A:) Hemoglobi 14.8 5.3 0.00038 28.1 -2.8 46 19-77 6-51 (149)
No 1
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]}
Probab=77.89 E-value=0.71 Score=33.42 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=21.3
Q ss_pred cHHHHHHHHHHHcCChHHHHHHHhc
Q 039464 80 SCVEALSAALIICGEEETANLLLGK 104 (192)
Q Consensus 80 scvEAlAAaLyI~G~~~~A~~lL~~ 104 (192)
+++|||.+|+|+-|-.+.++.++.+
T Consensus 96 d~fEAliGalYLd~~~e~~~~~i~~ 120 (127)
T d1u61a_ 96 TAFEALIGYHHLLNNRERLDEIVYK 120 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6689999999999888888888754
No 2
>d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic domain {Thermotoga maritima [TaxId: 2336]}
Probab=63.20 E-value=1.7 Score=32.01 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHHcCChHHHHHHHhc
Q 039464 80 SCVEALSAALIICGEEETANLLLGK 104 (192)
Q Consensus 80 scvEAlAAaLyI~G~~~~A~~lL~~ 104 (192)
.|+||+.+|+|+-|-.+.|..++.+
T Consensus 129 d~~EAliGAiylD~G~~~~~~~i~~ 153 (169)
T d1o0wa1 129 DAFEALLAAIYLDQGYEKIKELFEQ 153 (169)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 5899999999998877888777643
No 3
>d2cp8a1 a.5.2.1 (A:8-48) Migration-inducing protein 19 NBR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.19 E-value=9.3 Score=23.23 Aligned_cols=25 Identities=40% Similarity=0.347 Sum_probs=21.3
Q ss_pred HHHHHHHHcCChHHHHHHHhcCCchhhHHHHhHHHHHHHh
Q 039464 84 ALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYS 123 (192)
Q Consensus 84 AlAAaLyI~G~~~~A~~lL~~FkWG~~Fl~LN~elLe~Y~ 123 (192)
|+-+-|+=+||-++ .||..||+.|.
T Consensus 4 ~lM~~L~EMGF~DR---------------~lNq~LL~KH~ 28 (41)
T d2cp8a1 4 ALMAHLFEMGFCDR---------------QLNLRLLKKHN 28 (41)
T ss_dssp HHHHHHHHHTCCCH---------------HHHHHHHTTTT
T ss_pred HHHHHHHHhCcchh---------------HHHHHHHHHcc
Confidence 67788889999998 88999998874
No 4
>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}
Probab=29.26 E-value=17 Score=26.50 Aligned_cols=73 Identities=10% Similarity=0.069 Sum_probs=39.4
Q ss_pred ccCCcccHHHHHhcCeEEEeccccccccc----cccc--ccCCCCcccch--hhhh-CCCCCCCcccccHHHHHHHHHHH
Q 039464 21 HCVSKEDYSLIKRKGLAVVDCSWARLGDV----PFVK--LRCSAPRLLPW--LVAA-NPVNYGRPCELSCVEALSAALII 91 (192)
Q Consensus 21 ~~lSp~D~~ii~~~GlaVIDCSW~~l~~~----~f~k--~~~~~~R~LP~--LvAA-NPVNYGKP~kLscvEAlAAaLyI 91 (192)
..|||+...--. ..+.||||+|.-.+.- .|.+ |. ..+.+++ .++. .+...| +..|-+.|.|+..|--
T Consensus 8 ~lvs~~~L~~~l-~d~~iiD~r~~l~~~~~g~~~Y~~gHIP--GA~~~d~~~~l~~~~~~~~~-~~~lP~~~~~~~~l~~ 83 (156)
T d1okga1 8 VFLDPSEVADHL-AEYRIVDCRYSLKIKDHGSIQYAKEHVK--SAIRADVDTNLSKLVPTSTA-RHPLPPCAEFIDWCMA 83 (156)
T ss_dssp CEECHHHHTTCG-GGSEEEECCCCSSSTTTTTTHHHHCEET--TCEECCTTTTSCCCCTTCCC-SSCCCCHHHHHHHHHH
T ss_pred cEeCHHHHHHhc-CCCEEEEeeccCCCCcchHHHHHHcCCC--CCeEcCHHHhcccccCCCCC-ccccCCHHHHHHHHHh
Confidence 346665432111 3588999999632211 1222 22 3344554 1222 232333 3568789999999988
Q ss_pred cCChHH
Q 039464 92 CGEEET 97 (192)
Q Consensus 92 ~G~~~~ 97 (192)
+|-...
T Consensus 84 lGI~~~ 89 (156)
T d1okga1 84 NGMAGE 89 (156)
T ss_dssp TTCSSS
T ss_pred ccccCC
Confidence 775554
No 5
>d1o7ja_ c.88.1.1 (A:) Asparaginase type II {Erwinia chrysanthemi [TaxId: 556]}
Probab=28.95 E-value=42 Score=26.73 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=28.3
Q ss_pred CCCcccEEeCCCCCccCCcccHHH---HHhcCeEEEecc
Q 039464 7 SSGFGGIVLSPVGTHCVSKEDYSL---IKRKGLAVVDCS 42 (192)
Q Consensus 7 ~~~f~GIVLsP~~~~~lSp~D~~i---i~~~GlaVIDCS 42 (192)
.+..+||||--+|.--++++-.+. +.++||.||-||
T Consensus 237 ~~g~~GiVl~g~G~Gnvp~~~~~~l~~a~~~gipVV~~S 275 (325)
T d1o7ja_ 237 QHGVKGIVYAGMGAGSVSVRGIAGMRKALEKGVVVMRST 275 (325)
T ss_dssp HTTCSEEEEEEBTTTBCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred hcCCCEEEEeeeCCCCCCHHHHHHHHHHHhCCCEEEEEE
Confidence 456899999999998898754443 346899999996
No 6
>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.41 E-value=44 Score=23.37 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=34.4
Q ss_pred ccCCcccH-HHHHh----cCeEEEecccccccc----cccccccCCCCcccchhhhhCCCCCCCcccccHHHHHHHHHHH
Q 039464 21 HCVSKEDY-SLIKR----KGLAVVDCSWARLGD----VPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALSAALII 91 (192)
Q Consensus 21 ~~lSp~D~-~ii~~----~GlaVIDCSW~~l~~----~~f~k~~~~~~R~LP~LvAANPVNYGKP~kLscvEAlAAaLyI 91 (192)
..||++.. +.+.+ .++.||||||.-... -.|.+=+-...+.+|+--...+ .-+-+..+-..+.++..|--
T Consensus 8 ~lVs~~wL~~~L~~~~~~~~~~IiD~r~~~~~~~~~~~~y~~gHIPGAv~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ 86 (149)
T d1rhsa1 8 ALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDK-ASPYEVMLPSEAGFADYVGS 86 (149)
T ss_dssp SEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCT-TSSSSSCCCCHHHHHHHHHH
T ss_pred CccCHHHHHHHHhccCCCCCEEEEEecCcCCCCcchHHHHHHhcccCceeccHHhhccc-ccchhhhhhhhHHHHHHHhh
Confidence 34577665 33432 279999999943211 1122211123344555222222 22223445555666666655
Q ss_pred cCC
Q 039464 92 CGE 94 (192)
Q Consensus 92 ~G~ 94 (192)
+|.
T Consensus 87 ~Gi 89 (149)
T d1rhsa1 87 LGI 89 (149)
T ss_dssp TTC
T ss_pred hhc
Confidence 543
No 7
>d1a79a2 d.75.1.1 (A:9-82) Tetrameric tRNA splicing endonuclease, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=19.83 E-value=16 Score=24.24 Aligned_cols=17 Identities=47% Similarity=0.448 Sum_probs=12.4
Q ss_pred CCCc----ccccHHHHHHHHH
Q 039464 73 YGRP----CELSCVEALSAAL 89 (192)
Q Consensus 73 YGKP----~kLscvEAlAAaL 89 (192)
||+| ..||.+||++-..
T Consensus 27 YG~~~~~~l~Ls~~EalYLl~ 47 (74)
T d1a79a2 27 YGNVEGNFLSLSLVEALYLIN 47 (74)
T ss_dssp CSEECSSCEEEEHHHHHHHHH
T ss_pred CCCCcCCeEEEeHHHHHHHHh
Confidence 5555 5899999987543
No 8
>d1hlma_ a.1.1.2 (A:) Hemoglobin, different isoforms {Caudina arenicola, also known as Molpadia arenicola [TaxId: 7698]}
Probab=18.72 E-value=7.1 Score=27.76 Aligned_cols=46 Identities=13% Similarity=0.230 Sum_probs=30.0
Q ss_pred CCccCCcccHHHHHhcCeEEEecccccccccccccccCCCCcccchhhhhCCCCCCCcc
Q 039464 19 GTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPC 77 (192)
Q Consensus 19 ~~~~lSp~D~~ii~~~GlaVIDCSW~~l~~~~f~k~~~~~~R~LP~LvAANPVNYGKP~ 77 (192)
+...||++|+.+|++ ||+.+..-. ..-..+..--|+..|| .|..-|
T Consensus 8 ~~~~LT~~q~~~I~~--------sW~~v~~~~----~~~g~~~f~~lF~~~P-~~k~~F 53 (158)
T d1hlma_ 8 SVGDLTPAEKDLIRS--------TWDQLMTHR----TGFVADVFIRIFHNDP-TAQRKF 53 (158)
T ss_dssp CSCCSCHHHHHHHHH--------HHHHHTSCT----HHHHHHHHHHHTTTCS-TTTTSS
T ss_pred HHhcCCHHHHHHHHH--------HHHHHHhhH----HHHHHHHHHHHHHHCH-HHHHHH
Confidence 445699999999988 999874321 1112234445777777 776666
No 9
>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}
Probab=16.53 E-value=90 Score=21.49 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=39.0
Q ss_pred HHhcCeEEEeccccccccc------ccccccCCCCcccchhhhhCCCCCCCcccccHHHHHHHHHHHcCChHH
Q 039464 31 IKRKGLAVVDCSWARLGDV------PFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEET 97 (192)
Q Consensus 31 i~~~GlaVIDCSW~~l~~~------~f~k~~~~~~R~LP~LvAANPVNYGKP~kLscvEAlAAaLyI~G~~~~ 97 (192)
+.+.++.+|||+|..-... .|.+=+-...+.+|+--..++ .-+.|..|...+.++..|--+|-...
T Consensus 14 L~~~~v~iiD~r~~~~~~~~~~~~~~y~~gHIPGAi~~~~~~~~~~-~~~~~~~~p~~~~~~~~l~~~Gi~~~ 85 (147)
T d1urha1 14 IDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDH-TSPLPHMLPRPETFAVAMRELGVNQD 85 (147)
T ss_dssp TTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCS-SSSSSSCCCCHHHHHHHHHHTTCCTT
T ss_pred hCCCCeEEEEeeCCCCCccCccHHHHHHhCCccccEEeehhhhccc-cccccccCCCHHHHHHHHHHhCcCCC
Confidence 3446899999999521110 121111123455666444555 44567788888888888877776544
No 10
>d1scta_ a.1.1.2 (A:) Hemoglobin I {Ark clam (Scapharca inaequivalvis) [TaxId: 6561]}
Probab=14.81 E-value=5.3 Score=28.09 Aligned_cols=46 Identities=20% Similarity=0.256 Sum_probs=29.7
Q ss_pred CCccCCcccHHHHHhcCeEEEecccccccccccccccCCCCcccchhhhhCCCCCCCcc
Q 039464 19 GTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPC 77 (192)
Q Consensus 19 ~~~~lSp~D~~ii~~~GlaVIDCSW~~l~~~~f~k~~~~~~R~LP~LvAANPVNYGKP~ 77 (192)
+.-++|.+++..|++ ||+.+..-. ..-...++--|+..|| .|-+-|
T Consensus 6 ~~~~~s~~qk~~i~~--------sW~~v~~~~----~~~G~~if~~lF~~~P-~~k~~F 51 (149)
T d1scta_ 6 AKVCGSEAIKANLRR--------SWGVLSADI----EATGLMLMSNLFTLRP-DTKTYF 51 (149)
T ss_dssp HHHHTCHHHHHHHHH--------HHHHHGGGH----HHHHHHHHHHHHHHCG-GGGGGG
T ss_pred hhcCCCHHHHHHHHH--------HHHHHHccH----HHHHHHHHHHHHHHCc-hHHHHH
Confidence 345789999999988 999875321 1112234455777777 776666
Done!