BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039466
(263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And
Substrate Specificity Of Glycolate Oxidase
pdb|1GYL|B Chain B, Involvement Of Tyr24 And Trp108 In Substrate Binding And
Substrate Specificity Of Glycolate Oxidase
Length = 369
Score = 278 bits (710), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 149/270 (55%), Positives = 189/270 (70%), Gaps = 10/270 (3%)
Query: 4 EPVNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDIS 63
E N+N ++ +A+ LPKM YDFYA G E+Q+TL EN AF I F PRIL+DV ID++
Sbjct: 2 EITNVNEYEAIAKQKLPKMVYDFYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 64 TSTLDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCN 123
T+ L +KIS I+IAPT + K+A+PEGE ATARAA++ TIM LS ++ S+EEVA++
Sbjct: 62 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 124 A-------AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQ---QLK 173
YK R++ A LV+RAER GF A+ LT DTPRL RREADIKN+ + LK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181
Query: 174 NLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAIKA 233
N EG+ K+ S L +Y +D SLSWKD+ WL++IT+LPIL+KGV+T EDA A
Sbjct: 182 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 241
Query: 234 VEVGVAGIIVSNHGARQLDYTPATISALEE 263
V+ G AGIIVSNHGARQLDY PATI ALEE
Sbjct: 242 VQHGAAGIIVSNHGARQLDYVPATIMALEE 271
>pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2
Angstroms Resolution
Length = 370
Score = 276 bits (706), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 148/270 (54%), Positives = 189/270 (70%), Gaps = 10/270 (3%)
Query: 4 EPVNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDIS 63
E N+N ++ +A+ LPKM YD+YA G E+Q+TL EN AF I F PRIL+DV ID++
Sbjct: 3 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 62
Query: 64 TSTLDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCN 123
T+ L +KIS I+IAPT + K+A+PEGE ATARAA++ TIM LS ++ S+EEVA++
Sbjct: 63 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 122
Query: 124 A-------AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQ---QLK 173
YK R++ A LV+RAER GF A+ LT DTPRL RREADIKN+ + LK
Sbjct: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 182
Query: 174 NLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAIKA 233
N EG+ K+ S L +Y +D SLSWKD+ WL++IT+LPIL+KGV+T EDA A
Sbjct: 183 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 242
Query: 234 VEVGVAGIIVSNHGARQLDYTPATISALEE 263
V+ G AGIIVSNHGARQLDY PATI ALEE
Sbjct: 243 VQHGAAGIIVSNHGARQLDYVPATIMALEE 272
>pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With
Bound Active- Site Inhibitors
pdb|1AL8|A Chain A, Three-Dimensional Structure Of Glycolate Oxidase With
Bound Active- Site Inhibitors
Length = 359
Score = 276 bits (705), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 148/270 (54%), Positives = 189/270 (70%), Gaps = 10/270 (3%)
Query: 4 EPVNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDIS 63
E N+N ++ +A+ LPKM YD+YA G E+Q+TL EN AF I F PRIL+DV ID++
Sbjct: 2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 64 TSTLDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCN 123
T+ L +KIS I+IAPT + K+A+PEGE ATARAA++ TIM LS ++ S+EEVA++
Sbjct: 62 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 124 A-------AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQ---QLK 173
YK R++ A LV+RAER GF A+ LT DTPRL RREADIKN+ + LK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181
Query: 174 NLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAIKA 233
N EG+ K+ S L +Y +D SLSWKD+ WL++IT+LPIL+KGV+T EDA A
Sbjct: 182 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 241
Query: 234 VEVGVAGIIVSNHGARQLDYTPATISALEE 263
V+ G AGIIVSNHGARQLDY PATI ALEE
Sbjct: 242 VQHGAAGIIVSNHGARQLDYVPATIMALEE 271
>pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In
Complex With Cdst
pdb|2RDU|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Glyoxylate
pdb|2RDW|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Sulfate
Length = 387
Score = 204 bits (518), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 114/272 (41%), Positives = 170/272 (62%), Gaps = 14/272 (5%)
Query: 6 VNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTS 65
+ +N +++ A+ LPK YD+Y G ++ TL +N+ AF +PR+L +V D+STS
Sbjct: 23 ICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTS 82
Query: 66 TLDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNAA 125
L ++S I + T + ++A+ +GE+AT RA S T M+LS ++ SIEEVA + A
Sbjct: 83 VLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEA 142
Query: 126 --------YKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKN--KMIAQ-QLKN 174
YK R++ LV++AE+ G+ A+ +T DTP L R D++N K+ Q ++KN
Sbjct: 143 LRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKN 202
Query: 175 LE-GLLSTKVTSDTG--SNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAI 231
E LS + G S L AY + +DPS+SW+DI+WLR +T+LPI+ KG+L +DA
Sbjct: 203 FETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAR 262
Query: 232 KAVEVGVAGIIVSNHGARQLDYTPATISALEE 263
+AV+ G+ GI+VSNHGARQLD PATI L E
Sbjct: 263 EAVKHGLNGILVSNHGARQLDGVPATIDVLPE 294
>pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|B Chain B, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|C Chain C, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|D Chain D, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate
Length = 370
Score = 204 bits (518), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 114/272 (41%), Positives = 169/272 (62%), Gaps = 14/272 (5%)
Query: 6 VNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTS 65
+ +N +++ A+ LPK YD+Y G ++ TL +N+ AF +PR+L +V D+STS
Sbjct: 6 ICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTS 65
Query: 66 TLDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNAA 125
L ++S I + T + ++A+ +GE+AT RA S T M+LS ++ SIEEVA + A
Sbjct: 66 VLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEA 125
Query: 126 --------YKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKM-IAQQL--KN 174
YK R++ LV++AE+ G+ A+ +T DTP L R D++N+ + QL KN
Sbjct: 126 LRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKN 185
Query: 175 LE-GLLSTKVTSDTG--SNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAI 231
E LS + G S L AY + +DPS+SW+DI+WLR +T+LPI+ KG+L +DA
Sbjct: 186 FETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAR 245
Query: 232 KAVEVGVAGIIVSNHGARQLDYTPATISALEE 263
+AV+ G+ GI+VSNHGARQLD PATI L E
Sbjct: 246 EAVKHGLNGILVSNHGARQLDGVPATIDVLPE 277
>pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1
Length = 392
Score = 203 bits (517), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 114/272 (41%), Positives = 170/272 (62%), Gaps = 14/272 (5%)
Query: 6 VNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTS 65
+ +N +++ A+ LPK YD+Y G ++ TL +N+ AF +PR+L +V D+STS
Sbjct: 28 ICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTS 87
Query: 66 TLDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNAA 125
L ++S I + T + ++A+ +GE+AT RA S T M+LS ++ SIEEVA + A
Sbjct: 88 VLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEA 147
Query: 126 --------YKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKN--KMIAQ-QLKN 174
YK R++ LV++AE+ G+ A+ +T DTP L R D++N K+ Q ++KN
Sbjct: 148 LRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKN 207
Query: 175 LE-GLLSTKVTSDTG--SNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAI 231
E LS + G S L AY + +DPS+SW+DI+WLR +T+LPI+ KG+L +DA
Sbjct: 208 FETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAR 267
Query: 232 KAVEVGVAGIIVSNHGARQLDYTPATISALEE 263
+AV+ G+ GI+VSNHGARQLD PATI L E
Sbjct: 268 EAVKHGLNGILVSNHGARQLDGVPATIDVLPE 299
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 174 bits (441), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 108/271 (39%), Positives = 153/271 (56%), Gaps = 16/271 (5%)
Query: 6 VNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTS 65
+NL F+ LA L K + +Y+ G ++ T +EN A+H I F P+ILVDV ++DIST
Sbjct: 123 INLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTD 182
Query: 66 TLDYKISASIIIAPTGLHKLANP-EGEVATARAAASCNTIM--VLSFTSSCSIEEV--AA 120
L + ++ TGL KL NP EGE AR T + ++S +SCS EE+ AA
Sbjct: 183 MLGSHVDVPFYVSATGLCKLGNPLEGEKDVARGCGQGVTKVPQMISTAASCSPEEIIEAA 242
Query: 121 SCNAAYK--------KRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQL 172
+ + R + LV+ E+ G AL +T D P L +RE D+K K +
Sbjct: 243 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKF-SNTK 301
Query: 173 KNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAIK 232
+ + T V G++ A +K +DPSL+WKDIE L+ T LPI+IKGV ED IK
Sbjct: 302 AGPKAMKKTNVEESQGAS-RALSK-FIDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIK 359
Query: 233 AVEVGVAGIIVSNHGARQLDYTPATISALEE 263
A E+GV+G+++SNHG RQLD++ A I L E
Sbjct: 360 AAEIGVSGVVLSNHGGRQLDFSRAPIEVLAE 390
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 108/271 (39%), Positives = 152/271 (56%), Gaps = 16/271 (5%)
Query: 6 VNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTS 65
+NL F+ LA L K + FY+ G ++ T +EN A+H I F P+ILVDV ++DIST
Sbjct: 123 INLYDFEYLASQTLTKQAWAFYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTD 182
Query: 66 TLDYKISASIIIAPTGLHKLANP-EGEVATARAAASCNTIM--VLSFTSSCSIEEV--AA 120
L + ++ T L KL NP EGE AR T + ++S +SCS EE+ AA
Sbjct: 183 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 242
Query: 121 SCNAAYK--------KRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQL 172
+ + R + LV+ E+ G AL +T D P L +RE D+K K +
Sbjct: 243 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKF-SNTK 301
Query: 173 KNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAIK 232
+ + T V G++ A +K +DPSL+WKDIE L+ T LPI+IKGV ED IK
Sbjct: 302 AGPKAMKKTNVEESQGAS-RALSK-FIDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIK 359
Query: 233 AVEVGVAGIIVSNHGARQLDYTPATISALEE 263
A E+GV+G+++SNHG RQLD++ A I L E
Sbjct: 360 AAEIGVSGVVLSNHGGRQLDFSRAPIEVLAE 390
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant
pdb|1QCW|B Chain B, Flavocytochrome B2, Arg289lys Mutant
Length = 410
Score = 171 bits (434), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/271 (39%), Positives = 152/271 (56%), Gaps = 16/271 (5%)
Query: 6 VNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTS 65
+NL F+ LA L K + +Y+ G ++ T +EN A+H I F P+ILVDV ++DIST
Sbjct: 22 INLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTD 81
Query: 66 TLDYKISASIIIAPTGLHKLANP-EGEVATARAAASCNTIM--VLSFTSSCSIEEV--AA 120
L + ++ T L KL NP EGE AR T + ++S +SCS EE+ AA
Sbjct: 82 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 141
Query: 121 SCNAAYK--------KRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQL 172
+ + R + LV+ E+ G AL +T D P L ++E D+K K +
Sbjct: 142 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQKEKDMKLKF-SNTK 200
Query: 173 KNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAIK 232
+ + T V G++ A +K +DPSL+WKDIE L+ T LPI+IKGV ED IK
Sbjct: 201 AGFKAMKKTNVEESQGAS-RALSK-FIDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIK 258
Query: 233 AVEVGVAGIIVSNHGARQLDYTPATISALEE 263
A E+GV+G+++SNHG RQLD++ A I L E
Sbjct: 259 AAEIGVSGVVLSNHGGRQLDFSRAPIEVLAE 289
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 171 bits (434), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/271 (39%), Positives = 152/271 (56%), Gaps = 16/271 (5%)
Query: 6 VNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTS 65
+NL F+ LA L K + +Y+ G ++ T +EN A+H I F P+ILVDV ++DIST
Sbjct: 123 INLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTD 182
Query: 66 TLDYKISASIIIAPTGLHKLANP-EGEVATARAAASCNTIM--VLSFTSSCSIEEV--AA 120
L + ++ T L KL NP EGE AR T + ++S +SCS EE+ AA
Sbjct: 183 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTAASCSPEEIIEAA 242
Query: 121 SCNAAYK--------KRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQL 172
+ + R + LV+ E+ G AL +T D P L +RE D+K K +
Sbjct: 243 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKF-SNTK 301
Query: 173 KNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAIK 232
+ + T V G++ A +K +DPSL+WKDIE L+ T LPI+IKGV ED IK
Sbjct: 302 AGPKAMKKTNVEESQGAS-RALSK-FIDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIK 359
Query: 233 AVEVGVAGIIVSNHGARQLDYTPATISALEE 263
A E+GV+G+++SNHG RQLD++ A I L E
Sbjct: 360 AAEIGVSGVVLSNHGGRQLDFSRAPIEVLAE 390
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBJ|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 412
Score = 171 bits (434), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/271 (39%), Positives = 152/271 (56%), Gaps = 16/271 (5%)
Query: 6 VNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTS 65
+NL F+ LA L K + +Y+ G ++ T +EN A+H I F P+ILVDV ++DIST
Sbjct: 24 INLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTD 83
Query: 66 TLDYKISASIIIAPTGLHKLANP-EGEVATARAAASCNTIM--VLSFTSSCSIEEV--AA 120
L + ++ T L KL NP EGE AR T + ++S +SCS EE+ AA
Sbjct: 84 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 143
Query: 121 SCNAAYK--------KRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQL 172
+ + R + LV+ E+ G AL +T D P L +RE D+K K +
Sbjct: 144 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKF-SNTK 202
Query: 173 KNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAIK 232
+ + T V G++ A +K +DPSL+WKDIE L+ T LPI+IKGV ED IK
Sbjct: 203 AGPKAMKKTNVEESQGAS-RALSK-FIDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIK 260
Query: 233 AVEVGVAGIIVSNHGARQLDYTPATISALEE 263
A E+GV+G+++SNHG RQLD++ A I L E
Sbjct: 261 AAEIGVSGVVLSNHGGRQLDFSRAPIEVLAE 291
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 171 bits (434), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/271 (39%), Positives = 152/271 (56%), Gaps = 16/271 (5%)
Query: 6 VNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTS 65
+NL F+ LA L K + +Y+ G ++ T +EN A+H I F P+ILVDV ++DIST
Sbjct: 118 INLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTD 177
Query: 66 TLDYKISASIIIAPTGLHKLANP-EGEVATARAAASCNTIM--VLSFTSSCSIEEV--AA 120
L + ++ T L KL NP EGE AR T + ++S +SCS EE+ AA
Sbjct: 178 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 237
Query: 121 SCNAAYK--------KRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQL 172
+ + R + LV+ E+ G AL +T D P L +RE D+K K +
Sbjct: 238 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKF-SNTK 296
Query: 173 KNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAIK 232
+ + T V G++ A +K +DPSL+WKDIE L+ T LPI+IKGV ED IK
Sbjct: 297 AGPKAMKKTNVEESQGAS-RALSK-FIDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIK 354
Query: 233 AVEVGVAGIIVSNHGARQLDYTPATISALEE 263
A E+GV+G+++SNHG RQLD++ A I L E
Sbjct: 355 AAEIGVSGVVLSNHGGRQLDFSRAPIEVLAE 385
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 171 bits (433), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/271 (39%), Positives = 152/271 (56%), Gaps = 16/271 (5%)
Query: 6 VNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTS 65
+NL F+ LA L K + +Y+ G ++ T +EN A+H I F P+ILVDV ++DIST
Sbjct: 123 INLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTD 182
Query: 66 TLDYKISASIIIAPTGLHKLANP-EGEVATARAAASCNTIM--VLSFTSSCSIEEV--AA 120
L + ++ T L KL NP EGE AR T + ++S +SCS EE+ AA
Sbjct: 183 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 242
Query: 121 SCNAAYK--------KRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQL 172
+ + R + LV+ E+ G AL +T D P L +RE D+K K +
Sbjct: 243 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKF-SNTK 301
Query: 173 KNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAIK 232
+ + T V G++ A +K +DPSL+WKDIE L+ T LPI+IKGV ED IK
Sbjct: 302 AGPKAMKKTNVEESQGAS-RALSK-FIDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIK 359
Query: 233 AVEVGVAGIIVSNHGARQLDYTPATISALEE 263
A E+GV+G+++SNHG RQLD++ A I L E
Sbjct: 360 AAEIGVSGVVLSNHGGRQLDFSRAPIEVLAE 390
>pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|B Chain B, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|C Chain C, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|D Chain D, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|E Chain E, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|F Chain F, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|G Chain G, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|H Chain H, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
Length = 352
Score = 171 bits (432), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 148/266 (55%), Gaps = 12/266 (4%)
Query: 6 VNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTS 65
V L F+ A+ L K +DF G ++ T EN+ AF I PR L D+ ++D T+
Sbjct: 3 VCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTT 62
Query: 66 TLDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNAA 125
+ISA I I+PT H +A P+GE +TARAA N V+S +S S+E++ A+
Sbjct: 63 IQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEG 122
Query: 126 YK--------KRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEG 177
++ D +VQRAE GF ALV+T DTP L R D +N++ + L+
Sbjct: 123 FRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKD 182
Query: 178 LLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVG 237
L + K T S ++ K S W D+ L+SIT LPI++KG+LT+EDA A++
Sbjct: 183 LRALKEEKPTQSVPVSFPK----ASFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHN 238
Query: 238 VAGIIVSNHGARQLDYTPATISALEE 263
V GI+VSNHG RQLD A+I AL E
Sbjct: 239 VQGIVVSNHGGRQLDEVSASIDALRE 264
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 168 bits (425), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 106/271 (39%), Positives = 151/271 (55%), Gaps = 16/271 (5%)
Query: 6 VNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTS 65
+NL F+ LA L K + +Y+ G ++ T +EN A+H I F P+ILVDV ++DIST
Sbjct: 123 INLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTD 182
Query: 66 TLDYKISASIIIAPTGLHKLANP-EGEVATARAAASCNTIM--VLSFTSSCSIEEV--AA 120
L + ++ T L KL NP EGE AR T + ++S +SCS EE+ AA
Sbjct: 183 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 242
Query: 121 SCNAAYK--------KRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQL 172
+ + R + LV+ E+ G AL +T D P L +RE D+K K +
Sbjct: 243 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKF-SNTK 301
Query: 173 KNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAIK 232
+ + T V G++ A +K +DPSL+WKDIE L+ T LPI+IKGV ED IK
Sbjct: 302 AGPKAMKKTNVEESQGAS-RALSK-FIDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIK 359
Query: 233 AVEVGVAGIIVSNHGARQLDYTPATISALEE 263
A E+GV+G+++SN G RQLD++ A I L E
Sbjct: 360 AAEIGVSGVVLSNQGGRQLDFSRAPIEVLAE 390
>pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole.
pdb|3SGZ|B Chain B, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole.
pdb|3SGZ|C Chain C, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole
Length = 352
Score = 167 bits (423), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 107/272 (39%), Positives = 147/272 (54%), Gaps = 24/272 (8%)
Query: 6 VNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTS 65
V L F+ A+ L K +DF G ++ T EN+ AF I PR L D+ ++D T+
Sbjct: 3 VCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTT 62
Query: 66 TLDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNAA 125
+ISA I I+PT H +A P+GE +TARAA N V+S +S S+E++ A+
Sbjct: 63 IQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEG 122
Query: 126 YK--------KRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLE- 176
++ D +VQRAE GF ALV+T DTP L R D +N++ NLE
Sbjct: 123 FRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQL------NLEA 176
Query: 177 -----GLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAI 231
L + K T S + K S W D+ L+SIT LPI++KG+LT+EDA
Sbjct: 177 NILKAALRALKEEKPTQSVPVLFPK----ASFCWNDLSLLQSITRLPIILKGILTKEDAE 232
Query: 232 KAVEVGVAGIIVSNHGARQLDYTPATISALEE 263
A++ V GI+VSNHG RQLD A+I AL E
Sbjct: 233 LAMKHNVQGIVVSNHGGRQLDEVSASIDALRE 264
>pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The
Membrane-Associated (S)- Mandelate Dehydrogenase From
Pseudomonas Putida At 2.15a Resolution
pdb|1P4C|A Chain A, High Resolution Structure Of Oxidized Active Mutant Of
(S)- Mandelate Dehydrogenase
pdb|1P5B|A Chain A, High Resolution Structure Of Reduced Active Mutant Of
(S)-Mandelate Dehydrogenase
Length = 380
Score = 163 bits (413), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 96/264 (36%), Positives = 142/264 (53%), Gaps = 15/264 (5%)
Query: 1 MAAEPVNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRI 60
M+ N+ +++LA+ LPKM YD+ GG E++Y +K N + F F P+ LVDV R
Sbjct: 1 MSQNLFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRR 60
Query: 61 DISTSTLDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAA 120
+ L + S ++I PTGL+ P+G++A ARAA VLS S+ SIE++A
Sbjct: 61 SLQAEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLAR 120
Query: 121 SCNAAYK------KRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQ---Q 171
C+ R++A +V +A G+ LVLT D RE D+ N+
Sbjct: 121 QCDGDLWFQLYVIHREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLT 180
Query: 172 LKNLEGLLSTKVTSDTGSNLE---AYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTRE 228
LKN EG+ K+ +NLE A MD S +W+ + WLR + +L+KG+L+ E
Sbjct: 181 LKNFEGIDLGKMDK---ANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAE 237
Query: 229 DAIKAVEVGVAGIIVSNHGARQLD 252
DA + + G G+I+SNHG RQLD
Sbjct: 238 DADRCIAEGADGVILSNHGGRQLD 261
>pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase
pdb|2A7P|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 3-Indolelactate
pdb|2A85|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 2- Hydroxyoctanoate
pdb|3GIY|A Chain A, Crystal Structures Of The G81a Mutant Of The Active
Chimera Of (S)-Mandelate Dehydrogenase And Its Complex
With Two Of Its Substrates
Length = 380
Score = 160 bits (405), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 141/264 (53%), Gaps = 15/264 (5%)
Query: 1 MAAEPVNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRI 60
M+ N+ +++LA+ LPKM YD+ GG E++Y +K N + F F P+ LVDV R
Sbjct: 1 MSQNLFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRR 60
Query: 61 DISTSTLDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAA 120
+ L + S ++I PT L+ P+G++A ARAA VLS S+ SIE++A
Sbjct: 61 SLQAEVLGKRQSMPLLIGPTALNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLAR 120
Query: 121 SCNAAYK------KRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQ---Q 171
C+ R++A +V +A G+ LVLT D RE D+ N+
Sbjct: 121 QCDGDLWFQLYVIHREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLT 180
Query: 172 LKNLEGLLSTKVTSDTGSNLE---AYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTRE 228
LKN EG+ K+ +NLE A MD S +W+ + WLR + +L+KG+L+ E
Sbjct: 181 LKNFEGIDLGKMDK---ANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAE 237
Query: 229 DAIKAVEVGVAGIIVSNHGARQLD 252
DA + + G G+I+SNHG RQLD
Sbjct: 238 DADRCIAEGADGVILSNHGGRQLD 261
>pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|1 Chain 1, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|2 Chain 2, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|3 Chain 3, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Y Chain Y, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Z Chain Z, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 226
Score = 144 bits (362), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 116/208 (55%), Gaps = 60/208 (28%)
Query: 63 STSTLDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASC 122
+T+ L +KIS I+IAPT + K+A+PEGE ATARAA++ TIM LS ++ S+EEVA++
Sbjct: 1 TTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTG 60
Query: 123 NA-------AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNL 175
YK R++ A LV+RAER GF A+ LT
Sbjct: 61 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV------------------------ 96
Query: 176 EGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAIKAVE 235
WKD+ WL++IT+LPIL+KGV+T EDA AV+
Sbjct: 97 -----------------------------WKDVAWLQTITSLPILVKGVITAEDARLAVQ 127
Query: 236 VGVAGIIVSNHGARQLDYTPATISALEE 263
G AGIIVSNHGARQLDY PATI ALEE
Sbjct: 128 HGAAGIIVSNHGARQLDYVPATIMALEE 155
>pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|B Chain B, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|C Chain C, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|D Chain D, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|E Chain E, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|F Chain F, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|G Chain G, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|H Chain H, The Crystal Structure Of Lactate Oxidase
Length = 374
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 134/265 (50%), Gaps = 13/265 (4%)
Query: 6 VNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTS 65
VN +E A +P +++ AG +++T + N A+ +PR+ DV D ST
Sbjct: 20 VNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTSTE 79
Query: 66 TLDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNAA 125
L +KI A I+AP H LA+ E TARA + TIM +S S + EE++ N
Sbjct: 80 ILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLNGG 139
Query: 126 ------YKKRD--MAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQ-QLKNLE 176
Y +D ++ A+ +G A++LTAD+ R+ D+KNK + + ++
Sbjct: 140 PRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQ 199
Query: 177 GLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEV 236
L + +N+ +K+ + P +DIE + + + LP+ +KG+ EDA A++
Sbjct: 200 RYLRGTAEGMSLNNIYGASKQKISP----RDIEEIAAHSGLPVFVKGIQHPEDADMAIKA 255
Query: 237 GVAGIIVSNHGARQLDYTPATISAL 261
G +GI VSNHGARQL P + L
Sbjct: 256 GASGIWVSNHGARQLYEAPGSFDTL 280
>pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase
And A Substrate Analogue At 1.59 Angstrom Resolution
pdb|2NLI|B Chain B, Crystal Structure Of The Complex Between L-Lactate Oxidase
And A Substrate Analogue At 1.59 Angstrom Resolution
Length = 368
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 133/265 (50%), Gaps = 13/265 (4%)
Query: 6 VNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTS 65
VN +E A +P +++ AG +++T + N A+ +PR+ DV D ST
Sbjct: 14 VNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTSTE 73
Query: 66 TLDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNAA 125
L +KI A I+AP H LA+ E TARA + TIM +S S + EE++ N
Sbjct: 74 ILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLNGG 133
Query: 126 ------YKKRD--MAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQ-QLKNLE 176
Y +D ++ A+ +G A++LTAD+ R+ D+KNK + + ++
Sbjct: 134 PRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQ 193
Query: 177 GLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEV 236
L + +N+ +K+ + P +DIE + + LP+ +KG+ EDA A++
Sbjct: 194 RYLRGTAEGMSLNNIYGASKQKISP----RDIEEIAGHSGLPVFVKGIQHPEDADMAIKR 249
Query: 237 GVAGIIVSNHGARQLDYTPATISAL 261
G +GI VSNHGARQL P + L
Sbjct: 250 GASGIWVSNHGARQLYEAPGSFDTL 274
>pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|B Chain B, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|C Chain C, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|D Chain D, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2E77|A Chain A, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|B Chain B, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|C Chain C, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|D Chain D, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2ZFA|A Chain A, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
pdb|2ZFA|B Chain B, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
Length = 374
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 133/265 (50%), Gaps = 13/265 (4%)
Query: 6 VNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTS 65
VN +E A +P +++ AG +++T + N A+ +PR+ DV D ST
Sbjct: 20 VNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTSTE 79
Query: 66 TLDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNAA 125
L +KI A I+AP H LA+ E TARA + TIM +S S + EE++ N
Sbjct: 80 ILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLNGG 139
Query: 126 ------YKKRD--MAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQ-QLKNLE 176
Y +D ++ A+ +G A++LTAD+ R+ D+KNK + + ++
Sbjct: 140 PRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQ 199
Query: 177 GLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEV 236
L + +N+ +K+ + P +DIE + + LP+ +KG+ EDA A++
Sbjct: 200 RYLRGTAEGMSLNNIYGASKQKISP----RDIEEIAGHSGLPVFVKGIQHPEDADMAIKR 255
Query: 237 GVAGIIVSNHGARQLDYTPATISAL 261
G +GI VSNHGARQL P + L
Sbjct: 256 GASGIWVSNHGARQLYEAPGSFDTL 280
>pdb|1KPS|B Chain B, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|D Chain D, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 171
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 223 GVLTREDAIKAVEVGVAGIIVSNHGARQLDYTPATISAL 261
G+L ED IKA+ ++V NH RQ DY P ++ L
Sbjct: 105 GLLKSEDKIKAIPSLHGPLMVLNHVVRQ-DYFPKALAPL 142
>pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase
Length = 832
Score = 28.5 bits (62), Expect = 4.1, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 125 AYKKRDMAATLVQRAERNGFMALVLTAD 152
Y+ D+ A+L ++AE+ G+ +LTAD
Sbjct: 115 GYEADDVLASLAKKAEKEGYEVRILTAD 142
>pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex
Length = 832
Score = 28.5 bits (62), Expect = 4.3, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 125 AYKKRDMAATLVQRAERNGFMALVLTAD 152
Y+ D+ A+L ++AE+ G+ +LTAD
Sbjct: 115 GYEADDVLASLAKKAEKEGYEVRILTAD 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,916,674
Number of Sequences: 62578
Number of extensions: 251408
Number of successful extensions: 751
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 681
Number of HSP's gapped (non-prelim): 32
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)