Query 039466
Match_columns 263
No_of_seqs 187 out of 1123
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 09:56:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039466.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039466hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0538 Glycolate oxidase [Ene 100.0 8.8E-89 1.9E-93 600.2 17.8 259 5-263 1-270 (363)
2 PLN02493 probable peroxisomal 100.0 6.5E-79 1.4E-83 562.7 22.3 260 4-263 2-271 (367)
3 PLN02535 glycolate oxidase 100.0 4.7E-76 1E-80 544.1 22.8 263 1-263 1-270 (364)
4 PRK11197 lldD L-lactate dehydr 100.0 3.3E-75 7.3E-80 540.8 21.7 260 4-263 2-292 (381)
5 cd04736 MDH_FMN Mandelate dehy 100.0 2.1E-74 4.5E-79 532.2 20.4 254 9-263 1-283 (361)
6 cd03332 LMO_FMN L-Lactate 2-mo 100.0 3.3E-73 7.1E-78 528.3 22.4 258 5-263 18-300 (383)
7 TIGR02708 L_lactate_ox L-lacta 100.0 3.6E-73 7.7E-78 525.0 20.9 255 4-263 12-275 (367)
8 cd04737 LOX_like_FMN L-Lactate 100.0 4.2E-71 9.2E-76 510.2 20.4 256 4-263 4-268 (351)
9 PF01070 FMN_dh: FMN-dependent 100.0 5.1E-69 1.1E-73 498.6 18.2 249 15-263 1-272 (356)
10 cd02922 FCB2_FMN Flavocytochro 100.0 7.7E-68 1.7E-72 488.3 21.3 250 9-263 1-260 (344)
11 PLN02979 glycolate oxidase 100.0 6.8E-63 1.5E-67 453.1 18.7 244 20-263 13-270 (366)
12 COG1304 idi Isopentenyl diphos 100.0 8.6E-56 1.9E-60 408.7 14.2 255 8-263 1-265 (360)
13 cd02809 alpha_hydroxyacid_oxid 100.0 1.3E-45 2.8E-50 335.8 20.7 212 9-263 1-219 (299)
14 cd02811 IDI-2_FMN Isopentenyl- 99.9 2.4E-25 5.2E-30 205.0 11.1 169 40-248 18-213 (326)
15 PRK05437 isopentenyl pyrophosp 99.9 7.6E-25 1.6E-29 203.4 11.6 170 42-248 28-221 (352)
16 TIGR02151 IPP_isom_2 isopenten 99.9 3.6E-23 7.7E-28 191.0 12.4 172 42-250 21-216 (333)
17 TIGR01306 GMP_reduct_2 guanosi 99.8 4.6E-18 1E-22 155.3 11.9 156 43-251 3-172 (321)
18 PRK05458 guanosine 5'-monophos 99.7 4.2E-16 9E-21 143.0 12.5 156 43-253 6-177 (326)
19 TIGR01305 GMP_reduct_1 guanosi 99.6 8.5E-16 1.8E-20 140.0 11.3 170 43-263 9-203 (343)
20 PRK08649 inosine 5-monophospha 99.4 6E-12 1.3E-16 117.7 13.7 182 43-249 17-220 (368)
21 TIGR01304 IMP_DH_rel_2 IMP deh 99.2 1.4E-10 3E-15 108.4 13.5 186 43-252 14-224 (369)
22 PRK06843 inosine 5-monophospha 99.1 1.7E-09 3.6E-14 102.1 14.0 194 43-255 11-238 (404)
23 cd00381 IMPDH IMPDH: The catal 99.1 2.2E-09 4.7E-14 99.1 13.5 148 43-244 3-163 (325)
24 cd02808 GltS_FMN Glutamate syn 99.1 2.1E-09 4.6E-14 101.5 13.0 168 71-263 76-272 (392)
25 COG0042 tRNA-dihydrouridine sy 99.0 1E-09 2.3E-14 101.1 9.9 147 87-244 77-228 (323)
26 PRK07107 inosine 5-monophospha 98.7 3.4E-08 7.4E-13 96.0 8.2 59 205-263 271-337 (502)
27 PLN02274 inosine-5'-monophosph 98.5 2.7E-07 5.9E-12 89.8 8.3 51 202-252 274-329 (505)
28 PF01207 Dus: Dihydrouridine s 98.4 9.9E-08 2.2E-12 87.5 2.4 138 93-244 70-213 (309)
29 TIGR01037 pyrD_sub1_fam dihydr 98.4 5.8E-06 1.3E-10 75.2 13.0 52 201-252 142-198 (300)
30 KOG2335 tRNA-dihydrouridine sy 98.4 7.4E-06 1.6E-10 75.5 12.8 155 70-245 71-234 (358)
31 PRK05567 inosine 5'-monophosph 98.3 1.4E-06 2.9E-11 84.8 7.8 58 205-262 257-321 (486)
32 PRK10550 tRNA-dihydrouridine s 98.3 4.2E-06 9E-11 77.0 10.1 146 88-244 74-224 (312)
33 PRK10415 tRNA-dihydrouridine s 98.3 9E-06 2E-10 75.0 12.0 145 88-244 76-224 (321)
34 cd02940 DHPD_FMN Dihydropyrimi 98.3 1.8E-05 4E-10 72.2 13.3 43 206-248 158-204 (299)
35 TIGR00736 nifR3_rel_arch TIM-b 98.3 4.2E-06 9.1E-11 73.7 8.7 206 15-245 10-221 (231)
36 cd04739 DHOD_like Dihydroorota 98.2 3.7E-05 8.1E-10 71.0 15.0 43 205-247 152-198 (325)
37 PRK07259 dihydroorotate dehydr 98.2 1.7E-05 3.6E-10 72.3 12.2 45 201-245 142-190 (301)
38 PF00478 IMPDH: IMP dehydrogen 98.1 2.4E-05 5.2E-10 72.8 10.9 151 43-248 4-181 (352)
39 cd04728 ThiG Thiazole synthase 98.1 5.5E-06 1.2E-10 73.0 5.9 93 132-245 109-205 (248)
40 PRK07565 dihydroorotate dehydr 98.1 7E-05 1.5E-09 69.4 13.3 44 204-247 153-200 (334)
41 TIGR00742 yjbN tRNA dihydrouri 98.1 3.1E-05 6.8E-10 71.4 10.4 145 88-244 66-223 (318)
42 PRK00208 thiG thiazole synthas 98.1 7.3E-06 1.6E-10 72.4 5.9 93 132-245 109-205 (250)
43 cd02911 arch_FMN Archeal FMN-b 98.1 3.2E-05 7E-10 68.2 10.0 147 72-246 72-222 (233)
44 cd04740 DHOD_1B_like Dihydroor 98.0 3.1E-05 6.6E-10 70.4 9.5 109 94-252 81-195 (296)
45 PRK01033 imidazole glycerol ph 98.0 0.00016 3.6E-09 64.6 13.9 141 93-245 65-227 (258)
46 TIGR01302 IMP_dehydrog inosine 98.0 2.3E-05 5.1E-10 75.5 8.2 45 204-248 252-297 (450)
47 TIGR00737 nifR3_yhdG putative 98.0 8.6E-05 1.9E-09 68.3 11.6 144 88-244 74-222 (319)
48 cd02810 DHOD_DHPD_FMN Dihydroo 97.9 0.00026 5.6E-09 63.9 12.6 84 128-246 109-198 (289)
49 PRK05096 guanosine 5'-monophos 97.8 0.0002 4.3E-09 66.0 11.4 151 43-246 10-181 (346)
50 PLN02495 oxidoreductase, actin 97.8 0.00018 4E-09 67.9 11.4 42 206-247 172-217 (385)
51 TIGR03151 enACPred_II putative 97.8 0.00016 3.4E-09 66.4 10.2 167 65-245 6-191 (307)
52 TIGR00007 phosphoribosylformim 97.8 0.00059 1.3E-08 59.6 12.8 136 93-245 63-219 (230)
53 PTZ00314 inosine-5'-monophosph 97.7 0.00011 2.5E-09 71.6 8.1 48 201-248 266-314 (495)
54 cd04732 HisA HisA. Phosphorib 97.7 0.002 4.4E-08 56.2 15.1 136 93-245 64-220 (234)
55 PRK13585 1-(5-phosphoribosyl)- 97.7 0.00056 1.2E-08 60.1 11.3 136 93-245 67-223 (241)
56 PLN02826 dihydroorotate dehydr 97.7 0.0019 4.1E-08 61.6 15.3 31 215-245 261-297 (409)
57 cd04730 NPD_like 2-Nitropropan 97.7 0.00058 1.3E-08 59.6 11.1 163 72-245 2-186 (236)
58 PRK11815 tRNA-dihydrouridine s 97.6 0.00081 1.8E-08 62.4 12.5 145 88-244 76-233 (333)
59 TIGR03572 WbuZ glycosyl amidat 97.6 0.0034 7.5E-08 54.9 15.6 140 93-245 65-228 (232)
60 cd04731 HisF The cyclase subun 97.6 0.0021 4.5E-08 56.7 13.5 140 94-245 63-224 (243)
61 TIGR00735 hisF imidazoleglycer 97.5 0.0016 3.4E-08 58.1 12.5 141 93-245 65-230 (254)
62 cd02940 DHPD_FMN Dihydropyrimi 97.5 0.00087 1.9E-08 61.2 10.8 45 202-246 236-283 (299)
63 TIGR00737 nifR3_yhdG putative 97.5 0.001 2.2E-08 61.2 10.9 141 68-244 3-167 (319)
64 PRK05286 dihydroorotate dehydr 97.5 0.0032 6.9E-08 58.7 14.2 41 206-246 196-247 (344)
65 PRK02083 imidazole glycerol ph 97.5 0.0024 5.3E-08 56.7 12.7 141 93-245 65-228 (253)
66 PRK00748 1-(5-phosphoribosyl)- 97.4 0.001 2.2E-08 58.1 9.6 139 94-245 66-221 (233)
67 cd02810 DHOD_DHPD_FMN Dihydroo 97.4 0.001 2.2E-08 60.0 10.0 43 203-245 228-273 (289)
68 TIGR01037 pyrD_sub1_fam dihydr 97.4 0.0031 6.7E-08 57.4 13.0 40 205-244 223-263 (300)
69 cd02801 DUS_like_FMN Dihydrour 97.4 0.00098 2.1E-08 57.9 9.3 156 70-244 52-213 (231)
70 PRK14024 phosphoribosyl isomer 97.3 0.0011 2.3E-08 58.7 8.7 140 92-245 65-223 (241)
71 PRK13587 1-(5-phosphoribosyl)- 97.3 0.0062 1.4E-07 53.7 13.4 135 93-245 67-222 (234)
72 COG0167 PyrD Dihydroorotate de 97.3 0.0038 8.2E-08 57.3 12.1 43 205-247 149-196 (310)
73 cd02809 alpha_hydroxyacid_oxid 97.3 0.0023 4.9E-08 58.4 10.7 111 92-245 132-257 (299)
74 cd00331 IGPS Indole-3-glycerol 97.3 0.00088 1.9E-08 58.1 7.2 85 117-246 16-103 (217)
75 cd04738 DHOD_2_like Dihydrooro 97.3 0.0097 2.1E-07 55.0 14.4 68 33-107 9-77 (327)
76 PRK08318 dihydropyrimidine deh 97.2 0.0056 1.2E-07 58.5 12.6 41 206-246 158-202 (420)
77 cd04740 DHOD_1B_like Dihydroor 97.2 0.0022 4.8E-08 58.2 9.3 42 203-244 218-260 (296)
78 cd04723 HisA_HisF Phosphoribos 97.2 0.014 3.1E-07 51.3 14.1 137 91-245 67-219 (233)
79 CHL00200 trpA tryptophan synth 97.2 0.0028 6.2E-08 56.9 9.7 200 23-251 17-238 (263)
80 PLN02591 tryptophan synthase 97.2 0.0032 6.9E-08 56.2 9.6 40 207-246 180-220 (250)
81 cd04727 pdxS PdxS is a subunit 97.1 0.017 3.7E-07 52.1 14.0 155 70-245 63-226 (283)
82 cd04739 DHOD_like Dihydroorota 97.1 0.0077 1.7E-07 55.7 12.2 42 203-244 224-266 (325)
83 PRK11840 bifunctional sulfur c 97.1 0.001 2.2E-08 61.2 5.9 93 132-245 183-279 (326)
84 PRK07259 dihydroorotate dehydr 97.1 0.004 8.7E-08 56.7 9.7 43 202-244 220-263 (301)
85 TIGR00343 pyridoxal 5'-phospha 97.0 0.021 4.5E-07 51.7 13.7 155 70-245 65-229 (287)
86 TIGR00262 trpA tryptophan synt 97.0 0.0062 1.3E-07 54.5 10.1 196 22-247 11-230 (256)
87 COG0106 HisA Phosphoribosylfor 97.0 0.019 4.1E-07 50.8 12.8 139 88-244 61-221 (241)
88 PF05690 ThiG: Thiazole biosyn 97.0 0.0053 1.2E-07 54.0 8.9 124 93-244 80-204 (247)
89 cd04732 HisA HisA. Phosphorib 97.0 0.0069 1.5E-07 52.8 9.8 44 202-245 59-103 (234)
90 PRK04180 pyridoxal biosynthesi 96.9 0.028 6.1E-07 51.0 13.6 154 70-245 72-235 (293)
91 cd04729 NanE N-acetylmannosami 96.9 0.0043 9.3E-08 53.9 8.2 43 203-245 164-207 (219)
92 PRK01130 N-acetylmannosamine-6 96.9 0.0096 2.1E-07 51.7 10.2 42 203-244 160-202 (221)
93 CHL00162 thiG thiamin biosynth 96.9 0.0043 9.3E-08 55.1 7.9 97 125-244 119-218 (267)
94 PRK00278 trpC indole-3-glycero 96.9 0.0037 8.1E-08 56.0 7.5 83 117-244 55-140 (260)
95 PRK07565 dihydroorotate dehydr 96.9 0.017 3.6E-07 53.6 12.0 42 204-245 227-269 (334)
96 PRK08318 dihydropyrimidine deh 96.8 0.0033 7.1E-08 60.0 7.2 44 203-246 237-284 (420)
97 TIGR02708 L_lactate_ox L-lacta 96.8 0.0086 1.9E-07 56.3 9.5 90 115-246 220-314 (367)
98 TIGR00007 phosphoribosylformim 96.7 0.011 2.4E-07 51.5 9.5 43 203-245 59-102 (230)
99 TIGR01769 GGGP geranylgeranylg 96.7 0.13 2.9E-06 44.5 15.7 87 114-244 118-205 (205)
100 cd00381 IMPDH IMPDH: The catal 96.7 0.019 4.2E-07 53.1 11.1 117 91-243 95-225 (325)
101 PRK13957 indole-3-glycerol-pho 96.7 0.0061 1.3E-07 54.2 7.4 40 204-243 90-130 (247)
102 PRK07695 transcriptional regul 96.7 0.026 5.6E-07 48.3 11.0 43 202-245 135-178 (201)
103 COG2022 ThiG Uncharacterized e 96.7 0.016 3.4E-07 50.9 9.5 98 125-244 112-211 (262)
104 PRK07998 gatY putative fructos 96.6 0.021 4.5E-07 51.9 10.6 143 95-244 67-229 (283)
105 TIGR01036 pyrD_sub2 dihydrooro 96.5 0.038 8.2E-07 51.4 12.0 40 207-246 194-246 (335)
106 KOG2333 Uncharacterized conser 96.5 0.01 2.2E-07 57.1 8.1 147 88-244 331-485 (614)
107 PRK13396 3-deoxy-7-phosphohept 96.5 0.055 1.2E-06 50.6 12.7 154 82-246 146-308 (352)
108 PF04131 NanE: Putative N-acet 96.5 0.0035 7.6E-08 53.4 4.2 42 203-245 132-174 (192)
109 PRK05458 guanosine 5'-monophos 96.4 0.019 4.2E-07 53.1 9.3 43 203-245 186-231 (326)
110 TIGR01768 GGGP-family geranylg 96.4 0.0076 1.7E-07 52.9 6.2 47 202-248 164-212 (223)
111 PF01645 Glu_synthase: Conserv 96.4 0.0085 1.8E-07 56.3 6.8 41 70-111 63-103 (368)
112 PRK12738 kbaY tagatose-bisphos 96.4 0.12 2.5E-06 47.2 13.9 143 96-244 68-232 (286)
113 PRK12595 bifunctional 3-deoxy- 96.4 0.096 2.1E-06 49.2 13.6 145 89-247 169-325 (360)
114 COG3010 NanE Putative N-acetyl 96.4 0.1 2.3E-06 45.1 12.5 41 204-245 169-210 (229)
115 cd04731 HisF The cyclase subun 96.3 0.031 6.7E-07 49.2 9.7 44 202-245 57-101 (243)
116 PRK02083 imidazole glycerol ph 96.3 0.03 6.4E-07 49.7 9.3 45 202-246 60-105 (253)
117 cd04738 DHOD_2_like Dihydrooro 96.3 0.0083 1.8E-07 55.5 5.9 42 203-244 265-309 (327)
118 cd04741 DHOD_1A_like Dihydroor 96.3 0.017 3.7E-07 52.7 7.7 41 205-245 230-273 (294)
119 TIGR00734 hisAF_rel hisA/hisF 96.3 0.037 7.9E-07 48.4 9.5 44 202-245 170-214 (221)
120 TIGR01919 hisA-trpF 1-(5-phosp 96.2 0.056 1.2E-06 48.0 10.7 138 92-249 64-232 (243)
121 cd00331 IGPS Indole-3-glycerol 96.2 0.055 1.2E-06 46.7 10.4 42 204-245 158-202 (217)
122 TIGR01303 IMP_DH_rel_1 IMP deh 96.2 0.022 4.7E-07 55.4 8.5 45 206-251 255-301 (475)
123 TIGR01361 DAHP_synth_Bsub phos 96.2 0.2 4.3E-06 45.0 14.1 147 89-246 76-231 (260)
124 cd04729 NanE N-acetylmannosami 96.2 0.088 1.9E-06 45.6 11.5 111 92-247 30-153 (219)
125 PF03060 NMO: Nitronate monoox 96.1 0.11 2.5E-06 48.0 12.8 45 205-251 126-172 (330)
126 TIGR00735 hisF imidazoleglycer 96.1 0.039 8.4E-07 49.1 9.3 44 203-246 61-105 (254)
127 PRK05286 dihydroorotate dehydr 96.1 0.0053 1.1E-07 57.2 3.8 42 203-244 274-318 (344)
128 PLN02274 inosine-5'-monophosph 96.1 0.049 1.1E-06 53.4 10.5 119 92-245 250-381 (505)
129 PRK13397 3-deoxy-7-phosphohept 96.1 0.17 3.7E-06 45.2 13.0 154 78-246 56-221 (250)
130 cd04736 MDH_FMN Mandelate dehy 96.1 0.028 6.1E-07 52.8 8.4 89 114-245 227-319 (361)
131 cd02812 PcrB_like PcrB_like pr 96.1 0.013 2.9E-07 51.2 5.8 43 204-246 162-206 (219)
132 PRK00748 1-(5-phosphoribosyl)- 96.0 0.016 3.4E-07 50.5 6.2 43 203-245 61-104 (233)
133 PRK13111 trpA tryptophan synth 96.0 0.054 1.2E-06 48.6 9.7 194 22-246 13-230 (258)
134 PRK06843 inosine 5-monophospha 96.0 0.059 1.3E-06 51.3 10.3 118 91-245 154-286 (404)
135 PRK06801 hypothetical protein; 96.0 0.096 2.1E-06 47.7 11.2 45 200-244 187-233 (286)
136 PRK00278 trpC indole-3-glycero 96.0 0.06 1.3E-06 48.2 9.7 131 90-245 98-241 (260)
137 cd04734 OYE_like_3_FMN Old yel 96.0 0.042 9.1E-07 51.2 9.0 44 201-244 270-315 (343)
138 PRK04169 geranylgeranylglycery 95.9 0.018 3.9E-07 50.8 6.1 45 202-246 169-215 (232)
139 PRK06806 fructose-bisphosphate 95.9 0.094 2E-06 47.6 10.9 146 94-245 66-231 (281)
140 TIGR01859 fruc_bis_ald_ fructo 95.9 0.12 2.6E-06 46.9 11.6 170 69-245 37-231 (282)
141 TIGR01858 tag_bisphos_ald clas 95.9 0.085 1.8E-06 48.0 10.4 45 200-244 184-230 (282)
142 cd02803 OYE_like_FMN_family Ol 95.9 0.07 1.5E-06 48.9 10.0 43 202-244 267-311 (327)
143 COG2070 Dioxygenases related t 95.8 0.076 1.6E-06 49.4 10.1 168 22-244 38-213 (336)
144 PRK01130 N-acetylmannosamine-6 95.8 0.11 2.5E-06 44.9 10.7 112 91-248 25-150 (221)
145 PRK14114 1-(5-phosphoribosyl)- 95.8 0.062 1.4E-06 47.7 8.8 132 94-245 66-224 (241)
146 PRK02506 dihydroorotate dehydr 95.7 0.16 3.5E-06 46.7 11.8 42 205-246 146-193 (310)
147 PRK10550 tRNA-dihydrouridine s 95.7 0.28 6.2E-06 45.1 13.3 89 127-245 72-169 (312)
148 PTZ00314 inosine-5'-monophosph 95.7 0.075 1.6E-06 52.0 9.9 121 90-245 241-374 (495)
149 cd04737 LOX_like_FMN L-Lactate 95.7 0.05 1.1E-06 51.0 8.3 42 203-244 261-305 (351)
150 PRK12737 gatY tagatose-bisphos 95.7 0.12 2.6E-06 47.0 10.5 145 95-245 67-233 (284)
151 PRK13585 1-(5-phosphoribosyl)- 95.7 0.023 5E-07 49.8 5.7 45 203-247 63-108 (241)
152 PRK13523 NADPH dehydrogenase N 95.6 0.058 1.3E-06 50.2 8.5 42 202-243 261-304 (337)
153 cd04741 DHOD_1A_like Dihydroor 95.6 0.36 7.9E-06 43.9 13.3 41 206-246 147-195 (294)
154 cd00452 KDPG_aldolase KDPG and 95.5 0.22 4.7E-06 42.3 11.0 41 204-245 130-172 (190)
155 PRK12857 fructose-1,6-bisphosp 95.5 0.15 3.3E-06 46.4 10.6 142 97-244 69-232 (284)
156 PF00218 IGPS: Indole-3-glycer 95.5 0.026 5.6E-07 50.5 5.5 40 204-243 97-137 (254)
157 TIGR00259 thylakoid_BtpA membr 95.5 0.12 2.7E-06 46.3 9.7 45 201-246 184-229 (257)
158 PRK09195 gatY tagatose-bisphos 95.4 0.22 4.9E-06 45.3 11.3 45 200-244 186-232 (284)
159 TIGR01163 rpe ribulose-phospha 95.4 0.18 4E-06 42.8 10.3 79 126-248 7-88 (210)
160 PRK11815 tRNA-dihydrouridine s 95.4 0.2 4.4E-06 46.5 11.2 141 68-244 6-171 (333)
161 cd04722 TIM_phosphate_binding 95.3 0.23 5E-06 40.8 10.4 52 204-255 101-154 (200)
162 COG0191 Fba Fructose/tagatose 95.2 0.19 4.1E-06 45.6 10.0 169 69-243 39-233 (286)
163 PRK00043 thiE thiamine-phospha 95.2 0.36 7.7E-06 41.1 11.5 43 202-244 145-188 (212)
164 TIGR01182 eda Entner-Doudoroff 95.1 0.19 4.2E-06 43.5 9.5 71 127-246 17-88 (204)
165 cd04735 OYE_like_4_FMN Old yel 95.1 0.074 1.6E-06 49.7 7.4 40 204-243 270-312 (353)
166 PRK08610 fructose-bisphosphate 95.1 0.46 9.9E-06 43.3 12.3 146 93-244 65-233 (286)
167 PRK08673 3-deoxy-7-phosphohept 95.1 0.35 7.5E-06 45.1 11.7 145 90-246 145-299 (335)
168 PRK07709 fructose-bisphosphate 95.1 0.5 1.1E-05 43.0 12.5 146 93-244 65-233 (285)
169 PRK09140 2-dehydro-3-deoxy-6-p 95.0 0.42 9.2E-06 41.3 11.4 44 202-245 135-180 (206)
170 cd00945 Aldolase_Class_I Class 95.0 1.4 3E-05 36.6 14.4 43 202-244 156-201 (201)
171 cd02931 ER_like_FMN Enoate red 95.0 0.12 2.6E-06 48.9 8.6 82 130-244 252-335 (382)
172 PF00977 His_biosynth: Histidi 94.9 0.14 3E-06 44.9 8.2 138 93-245 64-221 (229)
173 TIGR00167 cbbA ketose-bisphosp 94.9 0.29 6.3E-06 44.6 10.4 44 201-244 190-236 (288)
174 PRK10415 tRNA-dihydrouridine s 94.9 0.4 8.7E-06 44.2 11.5 141 68-244 5-169 (321)
175 PRK13586 1-(5-phosphoribosyl)- 94.9 0.7 1.5E-05 40.7 12.5 132 93-244 64-218 (232)
176 KOG2550 IMP dehydrogenase/GMP 94.8 0.26 5.5E-06 46.8 9.9 43 203-245 278-321 (503)
177 TIGR03572 WbuZ glycosyl amidat 94.8 0.25 5.4E-06 43.1 9.5 43 202-244 60-103 (232)
178 PRK13398 3-deoxy-7-phosphohept 94.8 0.69 1.5E-05 41.7 12.4 154 79-246 69-233 (266)
179 TIGR01302 IMP_dehydrog inosine 94.7 0.29 6.3E-06 47.3 10.4 38 208-245 319-357 (450)
180 PLN02460 indole-3-glycerol-pho 94.6 0.066 1.4E-06 49.7 5.6 40 204-243 168-209 (338)
181 PRK04128 1-(5-phosphoribosyl)- 94.6 0.45 9.7E-06 41.8 10.6 127 94-245 65-212 (228)
182 PRK02615 thiamine-phosphate py 94.6 0.21 4.6E-06 46.7 9.0 45 201-245 279-323 (347)
183 PRK07807 inosine 5-monophospha 94.5 0.35 7.6E-06 47.2 10.7 41 205-245 316-360 (479)
184 COG0352 ThiE Thiamine monophos 94.5 0.31 6.7E-06 42.5 9.3 44 201-244 143-186 (211)
185 COG0134 TrpC Indole-3-glycerol 94.5 0.044 9.5E-07 48.9 4.1 39 204-242 95-134 (254)
186 TIGR01306 GMP_reduct_2 guanosi 94.5 0.18 4E-06 46.6 8.2 94 114-244 127-227 (321)
187 PF01884 PcrB: PcrB family; I 94.4 0.053 1.2E-06 47.8 4.3 38 209-246 175-213 (230)
188 PRK09140 2-dehydro-3-deoxy-6-p 94.4 0.38 8.3E-06 41.6 9.6 68 127-243 19-89 (206)
189 PRK05835 fructose-bisphosphate 94.4 0.38 8.1E-06 44.3 9.8 45 200-244 188-255 (307)
190 COG0159 TrpA Tryptophan syntha 94.3 0.24 5.3E-06 44.5 8.4 193 21-245 17-234 (265)
191 cd02933 OYE_like_FMN Old yello 94.3 0.37 8.1E-06 44.8 9.9 44 201-244 270-314 (338)
192 cd02930 DCR_FMN 2,4-dienoyl-Co 94.3 0.21 4.6E-06 46.6 8.2 40 204-243 263-305 (353)
193 PRK05567 inosine 5'-monophosph 94.2 0.32 6.9E-06 47.5 9.7 116 92-245 230-361 (486)
194 cd04743 NPD_PKS 2-Nitropropane 94.2 1.1 2.3E-05 41.6 12.5 37 208-246 96-132 (320)
195 cd00947 TBP_aldolase_IIB Tagat 94.2 0.94 2E-05 41.1 11.9 45 200-244 180-226 (276)
196 TIGR02129 hisA_euk phosphoribo 94.1 0.39 8.5E-06 42.9 9.2 137 93-244 67-232 (253)
197 PRK12457 2-dehydro-3-deoxyphos 94.1 1.6 3.6E-05 39.5 13.1 166 66-246 51-239 (281)
198 PRK06552 keto-hydroxyglutarate 94.1 0.53 1.2E-05 41.0 9.8 70 127-246 22-96 (213)
199 PRK06015 keto-hydroxyglutarate 94.0 0.5 1.1E-05 40.8 9.4 71 127-246 13-84 (201)
200 cd02932 OYE_YqiM_FMN Old yello 94.0 0.28 6.1E-06 45.4 8.5 41 203-243 277-319 (336)
201 cd04733 OYE_like_2_FMN Old yel 94.0 0.5 1.1E-05 43.8 10.1 40 204-243 280-321 (338)
202 PRK13802 bifunctional indole-3 94.0 0.1 2.2E-06 53.0 5.9 84 115-243 53-139 (695)
203 PF04309 G3P_antiterm: Glycero 93.8 0.015 3.3E-07 49.1 -0.2 41 205-245 129-170 (175)
204 TIGR02151 IPP_isom_2 isopenten 93.7 0.28 6.1E-06 45.5 7.9 39 206-244 243-283 (333)
205 cd04742 NPD_FabD 2-Nitropropan 93.7 0.69 1.5E-05 44.3 10.6 29 216-244 219-248 (418)
206 PRK13125 trpA tryptophan synth 93.6 0.15 3.2E-06 45.2 5.6 42 205-246 173-216 (244)
207 PRK04128 1-(5-phosphoribosyl)- 93.5 0.18 3.9E-06 44.3 6.0 43 203-245 60-103 (228)
208 PRK05718 keto-hydroxyglutarate 93.4 0.9 1.9E-05 39.6 10.0 70 127-245 24-95 (212)
209 cd00564 TMP_TenI Thiamine mono 93.4 0.25 5.3E-06 41.1 6.3 44 201-244 135-178 (196)
210 TIGR00742 yjbN tRNA dihydrouri 93.3 0.67 1.5E-05 42.8 9.7 91 127-249 64-164 (318)
211 PLN02617 imidazole glycerol ph 93.3 0.96 2.1E-05 44.8 11.1 42 203-244 469-512 (538)
212 PLN02446 (5-phosphoribosyl)-5- 93.2 0.95 2.1E-05 40.7 10.1 42 202-243 193-237 (262)
213 COG0107 HisF Imidazoleglycerol 93.2 0.82 1.8E-05 40.4 9.3 138 93-241 65-226 (256)
214 COG2876 AroA 3-deoxy-D-arabino 93.2 0.67 1.5E-05 41.6 8.9 45 202-246 200-251 (286)
215 cd00452 KDPG_aldolase KDPG and 93.2 0.9 1.9E-05 38.5 9.5 69 127-243 13-82 (190)
216 PLN02826 dihydroorotate dehydr 93.1 0.36 7.7E-06 46.2 7.7 41 204-244 327-370 (409)
217 COG0800 Eda 2-keto-3-deoxy-6-p 93.1 0.81 1.7E-05 39.8 9.1 69 127-244 22-91 (211)
218 PF01081 Aldolase: KDPG and KH 93.0 0.49 1.1E-05 40.7 7.7 68 127-242 17-85 (196)
219 PRK07084 fructose-bisphosphate 92.9 2.2 4.7E-05 39.6 12.2 146 96-244 77-268 (321)
220 COG1954 GlpP Glycerol-3-phosph 92.8 0.18 4E-06 42.3 4.6 46 201-246 129-175 (181)
221 cd04722 TIM_phosphate_binding 92.8 0.28 6E-06 40.3 5.7 39 207-245 161-200 (200)
222 cd03332 LMO_FMN L-Lactate 2-mo 92.7 0.45 9.7E-06 45.1 7.6 40 205-244 295-337 (383)
223 PRK08883 ribulose-phosphate 3- 92.7 0.8 1.7E-05 40.1 8.7 42 204-245 150-196 (220)
224 COG1646 Predicted phosphate-bi 92.6 0.2 4.3E-06 44.1 4.7 41 204-246 181-222 (240)
225 cd04724 Tryptophan_synthase_al 92.5 0.19 4.2E-06 44.4 4.7 41 205-246 176-217 (242)
226 TIGR01303 IMP_DH_rel_1 IMP deh 92.5 0.84 1.8E-05 44.5 9.4 33 213-245 325-358 (475)
227 COG2070 Dioxygenases related t 92.5 0.49 1.1E-05 44.1 7.5 55 205-262 117-176 (336)
228 PLN03033 2-dehydro-3-deoxyphos 92.4 4.4 9.6E-05 36.8 13.1 153 78-246 63-242 (290)
229 cd02911 arch_FMN Archeal FMN-b 92.2 1.9 4.2E-05 37.9 10.6 40 206-246 130-174 (233)
230 cd04726 KGPDC_HPS 3-Keto-L-gul 92.1 1.9 4.2E-05 36.4 10.3 43 204-246 146-188 (202)
231 PRK05437 isopentenyl pyrophosp 92.1 0.93 2E-05 42.4 8.9 40 206-245 250-291 (352)
232 PF00977 His_biosynth: Histidi 92.1 0.25 5.4E-06 43.3 4.8 43 204-246 61-104 (229)
233 PF00290 Trp_syntA: Tryptophan 92.1 0.25 5.5E-06 44.3 4.9 40 206-246 188-228 (259)
234 PRK06552 keto-hydroxyglutarate 92.0 2.9 6.2E-05 36.4 11.3 43 203-245 141-184 (213)
235 PF01070 FMN_dh: FMN-dependent 91.9 0.43 9.2E-06 44.8 6.4 42 204-245 266-310 (356)
236 PF02581 TMP-TENI: Thiamine mo 91.9 0.21 4.6E-06 42.0 4.0 44 201-244 134-177 (180)
237 TIGR00262 trpA tryptophan synt 91.9 0.93 2E-05 40.5 8.3 93 126-244 20-122 (256)
238 PF00218 IGPS: Indole-3-glycer 91.8 0.31 6.6E-06 43.7 5.1 142 93-244 72-238 (254)
239 cd02922 FCB2_FMN Flavocytochro 91.7 1.2 2.6E-05 41.7 9.1 41 204-244 254-300 (344)
240 PLN02535 glycolate oxidase 91.7 0.83 1.8E-05 43.1 8.1 40 206-245 266-308 (364)
241 PRK11197 lldD L-lactate dehydr 91.7 0.84 1.8E-05 43.3 8.2 41 204-244 286-329 (381)
242 cd04747 OYE_like_5_FMN Old yel 91.7 1.2 2.6E-05 42.0 9.1 40 204-243 268-327 (361)
243 TIGR01362 KDO8P_synth 3-deoxy- 91.5 6.1 0.00013 35.4 12.8 153 78-246 49-223 (258)
244 PRK13587 1-(5-phosphoribosyl)- 91.4 0.48 1E-05 41.8 5.9 43 203-245 63-106 (234)
245 cd02929 TMADH_HD_FMN Trimethyl 91.4 0.44 9.6E-06 44.9 6.0 42 202-243 275-318 (370)
246 PRK09427 bifunctional indole-3 91.1 0.3 6.6E-06 47.3 4.7 40 204-243 98-138 (454)
247 PRK08649 inosine 5-monophospha 91.1 2.2 4.7E-05 40.3 10.2 29 216-244 256-285 (368)
248 PRK07455 keto-hydroxyglutarate 91.1 5 0.00011 34.1 11.6 41 205-245 140-181 (187)
249 TIGR01304 IMP_DH_rel_2 IMP deh 91.0 1.6 3.4E-05 41.3 9.1 28 217-244 256-284 (369)
250 COG0269 SgbH 3-hexulose-6-phos 90.9 4.1 9E-05 35.6 11.0 54 201-258 147-202 (217)
251 PRK11750 gltB glutamate syntha 90.9 1.8 3.9E-05 47.4 10.5 39 71-110 857-895 (1485)
252 PRK06512 thiamine-phosphate py 90.8 0.76 1.7E-05 40.2 6.5 45 201-245 149-193 (221)
253 PRK07455 keto-hydroxyglutarate 90.6 3.2 7E-05 35.2 10.0 70 127-248 21-94 (187)
254 PRK07114 keto-hydroxyglutarate 90.5 2 4.4E-05 37.7 8.9 68 127-242 24-96 (222)
255 PRK07315 fructose-bisphosphate 90.5 0.77 1.7E-05 42.0 6.5 45 201-245 186-233 (293)
256 PRK07807 inosine 5-monophospha 90.5 1 2.2E-05 44.0 7.7 41 204-244 255-296 (479)
257 PRK05198 2-dehydro-3-deoxyphos 90.4 9.4 0.0002 34.4 13.1 153 78-246 57-231 (264)
258 TIGR03151 enACPred_II putative 90.4 0.57 1.2E-05 43.0 5.6 54 205-262 99-154 (307)
259 TIGR01182 eda Entner-Doudoroff 90.2 6 0.00013 34.2 11.5 36 207-243 92-127 (204)
260 PRK09196 fructose-1,6-bisphosp 90.2 1.5 3.2E-05 41.1 8.2 44 202-245 211-278 (347)
261 PRK04180 pyridoxal biosynthesi 90.0 0.51 1.1E-05 42.9 4.8 74 134-244 28-103 (293)
262 PRK00507 deoxyribose-phosphate 90.0 1.7 3.6E-05 38.1 8.0 44 202-245 163-209 (221)
263 PRK08255 salicylyl-CoA 5-hydro 90.0 1.5 3.2E-05 45.2 8.8 38 206-243 677-716 (765)
264 TIGR00693 thiE thiamine-phosph 89.9 0.91 2E-05 38.3 6.1 45 201-245 136-181 (196)
265 PRK01033 imidazole glycerol ph 89.8 0.74 1.6E-05 41.1 5.7 42 203-244 61-103 (258)
266 PRK07028 bifunctional hexulose 89.7 4 8.7E-05 39.1 11.1 42 204-245 150-191 (430)
267 PF01180 DHO_dh: Dihydroorotat 89.7 0.52 1.1E-05 42.7 4.7 39 206-244 232-273 (295)
268 PRK14024 phosphoribosyl isomer 89.6 0.85 1.8E-05 40.3 5.9 43 204-246 63-106 (241)
269 cd02801 DUS_like_FMN Dihydrour 89.6 0.75 1.6E-05 39.7 5.5 90 127-246 64-160 (231)
270 PRK04302 triosephosphate isome 89.4 0.66 1.4E-05 40.4 4.9 39 208-246 164-204 (223)
271 TIGR03128 RuMP_HxlA 3-hexulose 89.2 5.9 0.00013 33.6 10.7 41 203-244 144-186 (206)
272 PRK10605 N-ethylmaleimide redu 89.2 3.9 8.4E-05 38.4 10.3 38 206-243 282-320 (362)
273 cd02808 GltS_FMN Glutamate syn 89.1 3.8 8.2E-05 38.9 10.3 30 216-245 285-315 (392)
274 PF03437 BtpA: BtpA family; I 89.1 2.8 6.1E-05 37.5 8.8 44 202-246 186-229 (254)
275 TIGR01919 hisA-trpF 1-(5-phosp 89.1 0.92 2E-05 40.2 5.7 43 204-246 62-105 (243)
276 cd02803 OYE_like_FMN_family Ol 89.1 1.3 2.9E-05 40.4 7.0 45 204-248 194-252 (327)
277 cd02811 IDI-2_FMN Isopentenyl- 89.0 0.84 1.8E-05 42.2 5.6 40 206-245 244-285 (326)
278 PF01180 DHO_dh: Dihydroorotat 88.9 0.52 1.1E-05 42.7 4.1 40 207-246 153-198 (295)
279 PLN02858 fructose-bisphosphate 88.9 2.7 5.9E-05 46.2 10.2 44 201-244 1283-1331(1378)
280 cd00408 DHDPS-like Dihydrodipi 88.8 3.2 6.9E-05 37.1 9.1 74 128-246 16-101 (281)
281 PF01116 F_bP_aldolase: Fructo 88.7 2.1 4.6E-05 39.0 7.9 79 126-244 154-235 (287)
282 cd04724 Tryptophan_synthase_al 88.6 2.6 5.6E-05 37.2 8.2 93 127-243 11-110 (242)
283 TIGR00343 pyridoxal 5'-phospha 88.6 2.5 5.5E-05 38.4 8.1 41 204-244 55-96 (287)
284 PLN02460 indole-3-glycerol-pho 88.5 3.7 8E-05 38.3 9.4 25 221-245 294-318 (338)
285 cd00958 DhnA Class I fructose- 88.5 1.2 2.5E-05 38.9 5.9 41 204-244 167-214 (235)
286 PRK13125 trpA tryptophan synth 88.5 7.1 0.00015 34.4 11.0 39 205-243 63-107 (244)
287 cd00405 PRAI Phosphoribosylant 88.4 0.71 1.5E-05 39.4 4.4 44 201-246 139-183 (203)
288 PLN02495 oxidoreductase, actin 88.3 8 0.00017 36.8 11.7 30 216-245 270-300 (385)
289 TIGR03569 NeuB_NnaB N-acetylne 88.2 7.7 0.00017 36.1 11.3 93 92-240 123-219 (329)
290 TIGR01305 GMP_reduct_1 guanosi 88.1 2 4.4E-05 40.0 7.4 33 213-245 209-242 (343)
291 COG0167 PyrD Dihydroorotate de 88.0 1.7 3.6E-05 40.1 6.8 40 205-244 228-270 (310)
292 TIGR01521 FruBisAldo_II_B fruc 88.0 3.2 6.9E-05 38.9 8.7 43 202-244 209-275 (347)
293 COG0214 SNZ1 Pyridoxine biosyn 87.9 1 2.2E-05 39.9 5.0 41 205-245 195-238 (296)
294 TIGR02814 pfaD_fam PfaD family 87.8 2.7 5.8E-05 40.7 8.3 29 216-244 224-253 (444)
295 TIGR02129 hisA_euk phosphoribo 87.8 1.1 2.4E-05 40.1 5.3 41 204-245 64-105 (253)
296 cd04742 NPD_FabD 2-Nitropropan 87.3 21 0.00046 34.4 14.0 154 65-244 8-184 (418)
297 PRK08999 hypothetical protein; 87.1 1.6 3.5E-05 39.7 6.1 45 201-245 265-309 (312)
298 cd04723 HisA_HisF Phosphoribos 86.9 1.9 4.2E-05 37.8 6.4 46 202-247 64-110 (233)
299 COG0134 TrpC Indole-3-glycerol 86.8 3.5 7.6E-05 36.9 7.9 28 218-245 210-237 (254)
300 PRK13957 indole-3-glycerol-pho 86.8 5.7 0.00012 35.4 9.3 143 92-245 64-231 (247)
301 PRK13399 fructose-1,6-bisphosp 86.7 3.7 8E-05 38.5 8.3 44 202-245 211-278 (347)
302 PTZ00413 lipoate synthase; Pro 86.5 9 0.00019 36.5 10.8 24 86-109 177-200 (398)
303 KOG1606 Stationary phase-induc 86.4 1.4 3E-05 38.5 4.9 40 206-245 197-239 (296)
304 cd04727 pdxS PdxS is a subunit 86.3 3.6 7.7E-05 37.4 7.7 39 204-242 53-92 (283)
305 cd00429 RPE Ribulose-5-phospha 86.3 1.2 2.7E-05 37.6 4.7 39 206-245 151-195 (211)
306 PRK13802 bifunctional indole-3 86.3 4.8 0.0001 41.2 9.5 144 92-245 73-241 (695)
307 COG0434 SgcQ Predicted TIM-bar 86.0 0.68 1.5E-05 41.0 2.9 32 207-249 28-59 (263)
308 PRK05718 keto-hydroxyglutarate 85.9 13 0.00028 32.3 10.9 34 208-243 101-134 (212)
309 COG0159 TrpA Tryptophan syntha 85.9 6.7 0.00014 35.4 9.2 92 127-244 28-129 (265)
310 TIGR03239 GarL 2-dehydro-3-deo 85.9 5 0.00011 35.7 8.5 17 137-153 27-43 (249)
311 PRK03620 5-dehydro-4-deoxygluc 85.7 5.9 0.00013 36.1 9.1 73 128-245 26-109 (303)
312 COG0069 GltB Glutamate synthas 85.7 8.3 0.00018 37.7 10.4 40 69-109 163-202 (485)
313 PF03060 NMO: Nitronate monoox 85.7 1.4 3.1E-05 40.7 5.1 41 204-244 178-219 (330)
314 PRK08185 hypothetical protein; 85.7 4.3 9.3E-05 37.0 8.0 169 69-244 34-228 (283)
315 cd00954 NAL N-Acetylneuraminic 85.7 7.2 0.00016 35.2 9.6 74 128-246 19-105 (288)
316 cd00945 Aldolase_Class_I Class 85.6 16 0.00035 30.0 11.1 115 89-245 13-150 (201)
317 cd00951 KDGDH 5-dehydro-4-deox 85.5 6.7 0.00015 35.5 9.3 25 128-152 19-43 (289)
318 PRK08005 epimerase; Validated 85.3 8.7 0.00019 33.4 9.5 41 204-244 150-191 (210)
319 cd08565 GDPD_pAtGDE_like Glyce 85.1 4.9 0.00011 35.2 8.0 39 203-243 190-228 (235)
320 PRK09517 multifunctional thiam 85.0 2 4.4E-05 44.2 6.3 46 201-246 148-196 (755)
321 cd08210 RLP_RrRLP Ribulose bis 84.8 36 0.00077 32.1 14.3 107 45-153 95-228 (364)
322 PRK09197 fructose-bisphosphate 84.8 6.2 0.00014 37.0 8.8 45 200-244 224-279 (350)
323 COG0329 DapA Dihydrodipicolina 84.6 26 0.00056 32.0 12.7 79 73-151 9-107 (299)
324 PRK00366 ispG 4-hydroxy-3-meth 84.6 4.6 9.9E-05 37.9 7.7 69 127-243 39-107 (360)
325 COG0329 DapA Dihydrodipicolina 84.4 7.1 0.00015 35.7 9.0 74 128-246 23-108 (299)
326 cd08601 GDPD_SaGlpQ_like Glyce 84.3 12 0.00026 32.9 10.2 37 206-243 209-245 (256)
327 cd03319 L-Ala-DL-Glu_epimerase 84.2 2.6 5.7E-05 38.4 6.1 47 202-248 214-264 (316)
328 PRK05742 nicotinate-nucleotide 83.8 3.2 6.9E-05 37.7 6.3 53 201-253 216-272 (277)
329 PRK14114 1-(5-phosphoribosyl)- 83.7 2.5 5.5E-05 37.4 5.6 42 203-245 61-103 (241)
330 COG5016 Pyruvate/oxaloacetate 83.6 5.7 0.00012 38.0 8.0 43 200-242 183-229 (472)
331 PRK05096 guanosine 5'-monophos 83.6 4.8 0.0001 37.6 7.4 39 207-245 204-243 (346)
332 cd03315 MLE_like Muconate lact 83.4 10 0.00023 33.5 9.5 46 203-248 167-216 (265)
333 TIGR01163 rpe ribulose-phospha 83.4 2.3 4.9E-05 36.0 5.0 43 202-245 143-194 (210)
334 PRK02506 dihydroorotate dehydr 82.9 1.3 2.8E-05 40.7 3.5 38 208-245 231-271 (310)
335 COG5564 Predicted TIM-barrel e 82.7 4 8.6E-05 35.9 6.1 40 207-247 145-185 (276)
336 cd07937 DRE_TIM_PC_TC_5S Pyruv 82.7 16 0.00035 32.8 10.5 44 206-249 182-231 (275)
337 cd02932 OYE_YqiM_FMN Old yello 82.6 15 0.00031 34.0 10.4 43 204-246 207-263 (336)
338 TIGR02311 HpaI 2,4-dihydroxyhe 82.4 7.4 0.00016 34.6 8.0 20 136-155 26-45 (249)
339 PRK03512 thiamine-phosphate py 82.3 4.5 9.7E-05 35.1 6.5 45 201-245 142-187 (211)
340 COG0135 TrpF Phosphoribosylant 82.3 1.8 4E-05 37.6 4.0 43 201-245 141-184 (208)
341 PRK13307 bifunctional formalde 81.9 20 0.00043 34.2 11.2 42 203-244 316-358 (391)
342 TIGR01520 FruBisAldo_II_A fruc 81.6 11 0.00024 35.5 9.0 46 200-245 231-288 (357)
343 PRK13586 1-(5-phosphoribosyl)- 81.5 4.4 9.6E-05 35.7 6.2 42 204-245 61-103 (232)
344 PRK06015 keto-hydroxyglutarate 81.4 32 0.0007 29.7 11.4 35 208-243 89-123 (201)
345 cd07948 DRE_TIM_HCS Saccharomy 81.3 15 0.00033 32.9 9.7 42 206-247 174-219 (262)
346 PF04131 NanE: Putative N-acet 81.2 18 0.00039 31.1 9.5 35 206-242 83-117 (192)
347 cd00946 FBP_aldolase_IIA Class 81.1 11 0.00023 35.4 8.8 45 200-244 219-275 (345)
348 PRK10558 alpha-dehydro-beta-de 81.0 10 0.00022 33.9 8.4 17 137-153 34-50 (256)
349 PRK09722 allulose-6-phosphate 80.9 12 0.00025 33.1 8.6 42 204-245 152-198 (229)
350 cd08205 RuBisCO_IV_RLP Ribulos 80.6 44 0.00095 31.5 12.9 86 66-153 124-233 (367)
351 PF01680 SOR_SNZ: SOR/SNZ fami 80.6 9.2 0.0002 32.6 7.4 41 204-244 59-100 (208)
352 PRK08745 ribulose-phosphate 3- 80.6 15 0.00032 32.2 9.2 41 204-244 154-199 (223)
353 TIGR01036 pyrD_sub2 dihydrooro 80.5 1.5 3.2E-05 40.8 3.0 38 207-244 277-317 (335)
354 TIGR00259 thylakoid_BtpA membr 80.5 2 4.3E-05 38.6 3.6 33 226-258 30-64 (257)
355 PLN02898 HMP-P kinase/thiamin- 80.4 4.2 9E-05 39.8 6.3 45 201-245 429-476 (502)
356 PRK05848 nicotinate-nucleotide 80.2 4.9 0.00011 36.4 6.2 43 202-245 210-258 (273)
357 PRK07107 inosine 5-monophospha 80.1 21 0.00045 35.2 10.9 28 217-244 353-381 (502)
358 cd08583 PI-PLCc_GDPD_SF_unchar 80.1 14 0.0003 32.1 8.9 37 206-243 196-232 (237)
359 cd00429 RPE Ribulose-5-phospha 79.8 22 0.00048 29.8 9.9 75 127-243 9-86 (211)
360 PRK08185 hypothetical protein; 79.7 27 0.00057 31.8 10.8 60 91-150 26-98 (283)
361 cd08207 RLP_NonPhot Ribulose b 79.6 31 0.00068 33.0 11.6 47 204-250 248-307 (406)
362 TIGR01859 fruc_bis_ald_ fructo 79.6 26 0.00057 31.8 10.7 24 224-247 152-179 (282)
363 cd01572 QPRTase Quinolinate ph 79.5 5.5 0.00012 35.9 6.2 52 201-252 209-264 (268)
364 PF00701 DHDPS: Dihydrodipicol 79.3 9.1 0.0002 34.4 7.7 74 128-246 20-105 (289)
365 COG0042 tRNA-dihydrouridine sy 79.2 24 0.00053 32.6 10.6 141 67-243 5-171 (323)
366 cd00952 CHBPH_aldolase Trans-o 78.8 13 0.00028 34.0 8.6 24 127-150 26-49 (309)
367 cd00453 FTBP_aldolase_II Fruct 78.6 15 0.00033 34.3 8.9 45 200-244 217-272 (340)
368 COG2185 Sbm Methylmalonyl-CoA 78.5 25 0.00055 28.7 9.2 106 75-244 15-122 (143)
369 cd01568 QPRTase_NadC Quinolina 78.4 5.4 0.00012 35.9 5.9 51 202-252 209-265 (269)
370 TIGR02814 pfaD_fam PfaD family 78.3 28 0.00062 33.7 11.0 47 65-119 13-59 (444)
371 PRK06806 fructose-bisphosphate 78.2 44 0.00094 30.3 11.7 63 90-152 30-106 (281)
372 COG0106 HisA Phosphoribosylfor 78.1 5.5 0.00012 35.4 5.6 45 203-247 62-107 (241)
373 KOG3111 D-ribulose-5-phosphate 78.0 4.1 8.9E-05 35.1 4.6 39 206-244 158-197 (224)
374 PRK00230 orotidine 5'-phosphat 78.0 16 0.00035 31.9 8.6 27 229-259 192-218 (230)
375 TIGR03249 KdgD 5-dehydro-4-deo 77.8 54 0.0012 29.6 12.6 94 73-167 10-122 (296)
376 cd03316 MR_like Mandelate race 77.7 5 0.00011 37.1 5.6 46 203-248 227-276 (357)
377 PLN02446 (5-phosphoribosyl)-5- 77.6 4.7 0.0001 36.3 5.1 41 204-246 72-113 (262)
378 TIGR00433 bioB biotin syntheta 77.5 16 0.00035 32.7 8.8 39 206-244 101-140 (296)
379 cd00953 KDG_aldolase KDG (2-ke 77.5 18 0.0004 32.4 9.1 26 127-152 17-42 (279)
380 PRK08091 ribulose-phosphate 3- 77.4 21 0.00045 31.5 9.1 41 204-244 162-207 (228)
381 PF09370 TIM-br_sig_trns: TIM- 77.4 11 0.00024 33.9 7.4 45 202-247 133-179 (268)
382 PRK14017 galactonate dehydrata 77.4 13 0.00028 34.9 8.4 47 202-248 214-264 (382)
383 cd03325 D-galactonate_dehydrat 77.2 13 0.00029 34.5 8.3 47 202-248 213-263 (352)
384 cd02930 DCR_FMN 2,4-dienoyl-Co 77.1 11 0.00025 35.0 7.8 47 204-250 190-252 (353)
385 PF00834 Ribul_P_3_epim: Ribul 76.9 5.3 0.00012 34.4 5.2 41 204-244 149-194 (201)
386 smart00052 EAL Putative diguan 76.9 5.1 0.00011 34.1 5.1 36 206-241 193-228 (241)
387 cd08580 GDPD_Rv2277c_like Glyc 76.7 6.1 0.00013 35.5 5.7 42 204-246 218-259 (263)
388 cd00377 ICL_PEPM Members of th 76.6 11 0.00024 33.3 7.2 46 202-247 182-229 (243)
389 COG3010 NanE Putative N-acetyl 76.5 26 0.00056 30.6 9.1 38 205-242 55-103 (229)
390 PRK04147 N-acetylneuraminate l 76.3 18 0.00039 32.7 8.7 75 128-247 22-109 (293)
391 cd00951 KDGDH 5-dehydro-4-deox 76.1 59 0.0013 29.3 14.7 80 73-152 5-103 (289)
392 PRK07315 fructose-bisphosphate 76.1 11 0.00024 34.4 7.3 20 225-244 154-173 (293)
393 TIGR03586 PseI pseudaminic aci 76.0 49 0.0011 30.8 11.6 92 92-239 124-217 (327)
394 COG0284 PyrF Orotidine-5'-phos 75.8 23 0.00049 31.5 9.0 63 52-114 64-128 (240)
395 PRK08227 autoinducer 2 aldolas 75.8 13 0.00028 33.5 7.5 69 134-242 98-176 (264)
396 TIGR03326 rubisco_III ribulose 75.7 25 0.00054 33.8 9.8 20 230-249 291-311 (412)
397 cd03174 DRE_TIM_metallolyase D 75.7 28 0.00061 30.4 9.7 41 207-247 180-225 (265)
398 cd04743 NPD_PKS 2-Nitropropane 75.7 60 0.0013 30.1 12.0 29 216-244 165-202 (320)
399 cd07943 DRE_TIM_HOA 4-hydroxy- 75.6 28 0.00061 30.9 9.7 44 206-249 174-224 (263)
400 PRK06801 hypothetical protein; 75.6 36 0.00079 31.0 10.4 61 90-150 30-104 (286)
401 PRK15452 putative protease; Pr 75.5 8.9 0.00019 37.1 6.8 74 134-247 14-99 (443)
402 PF00478 IMPDH: IMP dehydrogen 75.4 5.7 0.00012 37.3 5.3 40 206-245 201-241 (352)
403 PRK03620 5-dehydro-4-deoxygluc 75.3 65 0.0014 29.3 14.3 158 73-246 12-190 (303)
404 PLN02334 ribulose-phosphate 3- 75.3 37 0.00079 29.5 10.1 44 203-248 52-97 (229)
405 PRK10128 2-keto-3-deoxy-L-rham 75.2 13 0.00028 33.5 7.4 20 225-244 78-97 (267)
406 TIGR01928 menC_lowGC/arch o-su 75.1 29 0.00063 31.8 9.9 45 204-248 211-259 (324)
407 TIGR00612 ispG_gcpE 1-hydroxy- 74.9 13 0.00028 34.7 7.3 69 127-243 31-99 (346)
408 TIGR03249 KdgD 5-dehydro-4-deo 74.8 23 0.0005 32.0 9.1 25 128-152 24-48 (296)
409 PRK07428 nicotinate-nucleotide 74.7 9 0.0002 35.0 6.3 48 206-253 184-232 (288)
410 PRK04147 N-acetylneuraminate l 74.7 65 0.0014 29.0 12.4 79 73-151 8-107 (293)
411 TIGR00078 nadC nicotinate-nucl 74.5 8.6 0.00019 34.6 6.0 42 207-248 167-209 (265)
412 CHL00200 trpA tryptophan synth 74.4 42 0.00092 30.1 10.5 93 126-244 25-126 (263)
413 PRK07226 fructose-bisphosphate 74.0 7.4 0.00016 34.8 5.5 40 204-243 184-230 (267)
414 COG0800 Eda 2-keto-3-deoxy-6-p 73.6 44 0.00095 29.2 9.9 97 89-242 25-131 (211)
415 cd01948 EAL EAL domain. This d 73.3 7.4 0.00016 33.0 5.2 36 206-241 192-227 (240)
416 PLN02334 ribulose-phosphate 3- 73.2 8.2 0.00018 33.6 5.5 42 204-245 161-203 (229)
417 PLN02591 tryptophan synthase 73.1 51 0.0011 29.4 10.6 93 126-244 12-113 (250)
418 TIGR02660 nifV_homocitr homoci 73.0 42 0.00091 31.5 10.5 44 206-249 175-224 (365)
419 COG0157 NadC Nicotinate-nucleo 72.8 9.8 0.00021 34.5 5.9 44 204-247 173-218 (280)
420 PRK05581 ribulose-phosphate 3- 72.8 38 0.00082 28.7 9.5 79 127-248 13-93 (220)
421 PLN02979 glycolate oxidase 72.7 7.3 0.00016 36.7 5.3 41 205-245 265-308 (366)
422 cd00950 DHDPS Dihydrodipicolin 72.5 26 0.00057 31.3 8.8 73 128-244 19-102 (284)
423 TIGR00078 nadC nicotinate-nucl 72.4 11 0.00024 33.9 6.2 45 201-245 205-251 (265)
424 COG1411 Uncharacterized protei 72.4 7.5 0.00016 33.7 4.8 44 202-245 167-211 (229)
425 PF00563 EAL: EAL domain; Int 72.3 6.1 0.00013 33.4 4.5 36 206-241 193-228 (236)
426 COG0107 HisF Imidazoleglycerol 72.1 17 0.00037 32.3 7.0 39 205-243 63-102 (256)
427 PRK13111 trpA tryptophan synth 72.0 55 0.0012 29.3 10.6 41 204-244 76-124 (258)
428 cd01568 QPRTase_NadC Quinolina 72.0 11 0.00023 34.0 6.1 42 206-247 169-211 (269)
429 TIGR02313 HpaI-NOT-DapA 2,4-di 71.4 29 0.00064 31.4 8.9 72 128-243 19-101 (294)
430 PF00682 HMGL-like: HMGL-like 71.4 23 0.0005 30.6 8.0 42 206-247 170-216 (237)
431 PLN02925 4-hydroxy-3-methylbut 71.4 50 0.0011 33.9 11.0 62 93-154 214-276 (733)
432 cd07939 DRE_TIM_NifV Streptomy 71.3 56 0.0012 28.9 10.5 41 207-247 173-217 (259)
433 PTZ00170 D-ribulose-5-phosphat 71.3 43 0.00093 29.2 9.6 76 126-244 15-95 (228)
434 PRK12290 thiE thiamine-phospha 71.3 12 0.00025 36.3 6.4 45 201-245 340-393 (437)
435 cd08209 RLP_DK-MTP-1-P-enolase 71.3 30 0.00064 33.0 9.1 21 230-250 271-291 (391)
436 cd01573 modD_like ModD; Quinol 71.1 11 0.00024 34.0 6.0 105 131-246 104-212 (272)
437 PRK12331 oxaloacetate decarbox 71.1 41 0.00088 32.7 10.2 42 206-247 187-232 (448)
438 PRK09250 fructose-bisphosphate 70.9 13 0.00029 34.7 6.5 20 134-153 150-169 (348)
439 PF01081 Aldolase: KDPG and KH 70.4 69 0.0015 27.5 11.4 35 208-243 93-127 (196)
440 PLN02493 probable peroxisomal 70.2 8.9 0.00019 36.2 5.3 41 205-245 266-309 (367)
441 COG1692 Calcineurin-like phosp 70.1 10 0.00022 33.9 5.3 44 204-247 18-69 (266)
442 cd00408 DHDPS-like Dihydrodipi 69.7 81 0.0017 28.0 14.6 78 74-151 3-100 (281)
443 COG0434 SgcQ Predicted TIM-bar 69.7 36 0.00078 30.4 8.5 46 202-248 191-239 (263)
444 PF00290 Trp_syntA: Tryptophan 69.6 18 0.0004 32.4 7.0 92 126-245 20-123 (259)
445 cd07940 DRE_TIM_IPMS 2-isoprop 69.4 54 0.0012 29.2 10.0 42 206-247 176-224 (268)
446 PF00724 Oxidored_FMN: NADH:fl 69.4 9.5 0.00021 35.4 5.3 38 206-243 281-320 (341)
447 TIGR00126 deoC deoxyribose-pho 69.2 12 0.00027 32.4 5.6 43 201-243 158-203 (211)
448 KOG2334 tRNA-dihydrouridine sy 69.0 8.8 0.00019 36.8 4.9 78 125-243 158-241 (477)
449 cd01573 modD_like ModD; Quinol 68.8 16 0.00035 32.9 6.5 36 216-252 230-267 (272)
450 cd08208 RLP_Photo Ribulose bis 68.5 42 0.00091 32.4 9.5 21 230-250 304-324 (424)
451 PF00697 PRAI: N-(5'phosphorib 68.5 2.2 4.7E-05 36.5 0.7 44 202-245 132-177 (197)
452 TIGR02534 mucon_cyclo muconate 68.4 53 0.0012 30.6 10.2 47 202-248 224-274 (368)
453 TIGR00683 nanA N-acetylneurami 68.2 37 0.00079 30.7 8.8 72 128-243 19-102 (290)
454 TIGR01108 oadA oxaloacetate de 68.1 49 0.0011 33.3 10.3 42 206-247 182-227 (582)
455 cd00958 DhnA Class I fructose- 68.1 42 0.00091 29.0 8.9 38 211-248 117-167 (235)
456 TIGR01949 AroFGH_arch predicte 67.9 12 0.00026 33.2 5.5 41 204-244 180-227 (258)
457 PRK01222 N-(5'-phosphoribosyl) 67.8 9.6 0.00021 32.9 4.7 40 202-245 143-184 (210)
458 PF01645 Glu_synthase: Conserv 67.7 22 0.00048 33.6 7.4 29 216-244 274-303 (368)
459 TIGR03217 4OH_2_O_val_ald 4-hy 67.5 27 0.00058 32.5 7.9 87 126-247 20-110 (333)
460 cd03321 mandelate_racemase Man 67.4 50 0.0011 30.7 9.7 47 202-248 223-273 (355)
461 PRK07695 transcriptional regul 67.3 15 0.00032 31.2 5.7 40 208-247 86-125 (201)
462 PRK08227 autoinducer 2 aldolas 67.3 32 0.00068 31.0 8.0 84 69-153 137-229 (264)
463 cd03329 MR_like_4 Mandelate ra 67.2 33 0.00073 32.0 8.6 45 204-248 228-277 (368)
464 cd07938 DRE_TIM_HMGL 3-hydroxy 67.2 95 0.0021 27.9 11.5 42 206-247 182-228 (274)
465 TIGR00284 dihydropteroate synt 66.8 1.1E+02 0.0023 30.3 12.1 113 93-248 219-355 (499)
466 TIGR00674 dapA dihydrodipicoli 66.7 44 0.00095 30.0 9.0 73 128-244 17-100 (285)
467 cd01572 QPRTase Quinolinate ph 66.5 16 0.00035 32.9 6.0 41 207-247 171-212 (268)
468 PRK05581 ribulose-phosphate 3- 66.1 11 0.00024 32.1 4.8 40 206-245 155-199 (220)
469 TIGR02320 PEP_mutase phosphoen 66.1 91 0.002 28.4 10.8 115 75-243 42-188 (285)
470 PRK08508 biotin synthase; Prov 65.8 32 0.0007 30.9 7.9 75 127-243 40-118 (279)
471 TIGR03128 RuMP_HxlA 3-hexulose 65.7 50 0.0011 27.8 8.7 103 88-243 11-132 (206)
472 PRK08072 nicotinate-nucleotide 65.7 18 0.00039 32.8 6.1 51 202-252 216-270 (277)
473 PRK03170 dihydrodipicolinate s 65.5 43 0.00093 30.1 8.7 79 73-151 6-104 (292)
474 PRK14057 epimerase; Provisiona 65.3 42 0.0009 30.1 8.3 41 204-244 176-221 (254)
475 PLN02417 dihydrodipicolinate s 65.2 48 0.001 29.8 8.9 74 128-245 20-104 (280)
476 PRK05848 nicotinate-nucleotide 65.1 19 0.0004 32.7 6.1 40 205-245 169-210 (273)
477 PRK09549 mtnW 2,3-diketo-5-met 64.9 1.3E+02 0.0028 28.9 12.0 61 93-153 154-237 (407)
478 PF04481 DUF561: Protein of un 64.8 52 0.0011 29.0 8.4 40 206-246 51-90 (242)
479 PRK13958 N-(5'-phosphoribosyl) 64.7 9.8 0.00021 32.8 4.1 41 202-245 141-183 (207)
480 KOG0538 Glycolate oxidase [Ene 64.5 11 0.00024 34.8 4.5 42 203-244 263-307 (363)
481 COG2185 Sbm Methylmalonyl-CoA 64.4 6.9 0.00015 32.0 2.9 56 207-262 31-88 (143)
482 COG0036 Rpe Pentose-5-phosphat 64.4 51 0.0011 29.0 8.4 40 205-244 154-197 (220)
483 PRK03170 dihydrodipicolinate s 64.2 53 0.0011 29.5 9.0 23 128-150 20-42 (292)
484 PRK13523 NADPH dehydrogenase N 63.9 26 0.00056 32.6 7.0 41 205-245 196-248 (337)
485 PF13653 GDPD_2: Glycerophosph 63.5 8.7 0.00019 22.8 2.5 18 225-242 8-25 (30)
486 COG2192 Predicted carbamoyl tr 63.5 15 0.00033 36.4 5.5 42 205-246 498-549 (555)
487 PRK07226 fructose-bisphosphate 63.4 45 0.00098 29.7 8.3 42 207-248 130-184 (267)
488 PRK14042 pyruvate carboxylase 63.4 78 0.0017 31.9 10.7 42 206-247 187-232 (596)
489 TIGR03247 glucar-dehydr glucar 63.4 46 0.001 32.2 8.8 39 205-243 268-307 (441)
490 cd04733 OYE_like_2_FMN Old yel 63.0 28 0.0006 32.2 7.1 43 203-245 201-257 (338)
491 PF03437 BtpA: BtpA family; I 62.8 8 0.00017 34.7 3.3 23 227-249 32-54 (254)
492 cd08556 GDPD Glycerophosphodie 62.6 18 0.00039 29.6 5.2 36 206-242 151-186 (189)
493 PRK02714 O-succinylbenzoate sy 62.6 15 0.00032 33.8 5.2 46 203-248 204-253 (320)
494 PRK07094 biotin synthase; Prov 62.6 44 0.00094 30.4 8.2 37 208-244 109-146 (323)
495 PRK05742 nicotinate-nucleotide 62.5 21 0.00045 32.4 5.9 44 207-250 179-222 (277)
496 cd08563 GDPD_TtGDE_like Glycer 62.5 16 0.00035 31.4 5.2 36 207-243 192-227 (230)
497 COG1456 CdhE CO dehydrogenase/ 61.9 99 0.0021 29.3 10.2 94 125-246 141-239 (467)
498 TIGR03569 NeuB_NnaB N-acetylne 61.4 70 0.0015 29.8 9.3 101 126-245 12-117 (329)
499 COG1304 idi Isopentenyl diphos 61.4 8.1 0.00018 36.4 3.2 41 204-244 259-302 (360)
500 PRK12581 oxaloacetate decarbox 61.1 96 0.0021 30.4 10.5 197 6-247 32-241 (468)
No 1
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=100.00 E-value=8.8e-89 Score=600.20 Aligned_cols=259 Identities=61% Similarity=0.921 Sum_probs=247.2
Q ss_pred CCChHHHHHHHHHhCCccccccccCCccchHHHHHHHHhccccceeccccccccccccccccCCcccccceeecccCCcc
Q 039466 5 PVNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTSTLDYKISASIIIAPTGLHK 84 (263)
Q Consensus 5 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~~v~~~d~st~~lG~~~~~Pi~iaP~~~~~ 84 (263)
++|++|||+.|+++||+.+|+||.|||+|++|+++|++||+||+|+||+|+||+.+|+||++||+++++||+|||+++|+
T Consensus 1 lv~~~dfe~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qk 80 (363)
T KOG0538|consen 1 LVNVDDFEALAKQQLPKMAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQK 80 (363)
T ss_pred CccHHHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHCCCceeecCCCCccHHHHHHhccc--------cccCHHHHHHHHHHHHHcCCCEEEEccCCCCC
Q 039466 85 LANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNA--------AYKKRDMAATLVQRAERNGFMALVLTADTPRL 156 (263)
Q Consensus 85 l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~--------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~ 156 (263)
|+|||||.++||||+++|++|++||+++||+|||++++|. +++|++++++|++|||++||+||+||||+|++
T Consensus 81 ma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~l 160 (363)
T KOG0538|consen 81 MAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRL 160 (363)
T ss_pred ccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccc
Confidence 9999999999999999999999999999999999999974 78999999999999999999999999999999
Q ss_pred cchHHHHhhhhhhh---hhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEecCCHHHHHHH
Q 039466 157 DRREADIKNKMIAQ---QLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAIKA 233 (263)
Q Consensus 157 g~R~~d~r~~~~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKGI~s~eDA~~a 233 (263)
|+|+.|++|+|.+| +++|+......+..+...++...+.+.++|++++|+||+|||+.|++|||+||||+.|||++|
T Consensus 161 G~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~A 240 (363)
T KOG0538|consen 161 GRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLTGEDARKA 240 (363)
T ss_pred cCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecccHHHHHH
Confidence 99999999999998 567776655555555566778899999999999999999999999999999999999999999
Q ss_pred HHcCCCEEEEcCCCCCCCCCchhhhccccC
Q 039466 234 VEVGVAGIIVSNHGARQLDYTPATISALEE 263 (263)
Q Consensus 234 ~~~G~dgI~VSNHGGRqlD~~~~~i~~Lpe 263 (263)
+|+|++||+||||||||||+.|+||++|||
T Consensus 241 ve~G~~GIIVSNHGgRQlD~vpAtI~~L~E 270 (363)
T KOG0538|consen 241 VEAGVAGIIVSNHGGRQLDYVPATIEALPE 270 (363)
T ss_pred HHhCCceEEEeCCCccccCcccchHHHHHH
Confidence 999999999999999999999999999997
No 2
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=100.00 E-value=6.5e-79 Score=562.71 Aligned_cols=260 Identities=55% Similarity=0.877 Sum_probs=236.1
Q ss_pred CCCChHHHHHHHHHhCCccccccccCCccchHHHHHHHHhccccceeccccccccccccccccCCcccccceeecccCCc
Q 039466 4 EPVNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTSTLDYKISASIIIAPTGLH 83 (263)
Q Consensus 4 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~~v~~~d~st~~lG~~~~~Pi~iaP~~~~ 83 (263)
.++|++|||+.||++||+.+|+||+||++||.|+++|+++|++|+|+||+|+||+++||+|++||+++++||+|||+|++
T Consensus 2 ~~~~i~D~e~~Ar~~lp~~~~~y~~gga~de~t~~~N~~af~r~~l~PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~ 81 (367)
T PLN02493 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQ 81 (367)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHccCcchhHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChhHHHHHHHHHHCCCceeecCCCCccHHHHHHhccc-------cccCHHHHHHHHHHHHHcCCCEEEEccCCCCC
Q 039466 84 KLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNA-------AYKKRDMAATLVQRAERNGFMALVLTADTPRL 156 (263)
Q Consensus 84 ~l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~-------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~ 156 (263)
+|+||+||+++||||+++|++|++||.+++|+|||+++.++ +++|++.++++|+||+++||++|+||||+|+.
T Consensus 82 ~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~ 161 (367)
T PLN02493 82 KMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRL 161 (367)
T ss_pred hhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcCCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Confidence 99999999999999999999999999999999999987654 66899999999999999999999999999999
Q ss_pred cchHHHHhhhhhhh---hhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEecCCHHHHHHH
Q 039466 157 DRREADIKNKMIAQ---QLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAIKA 233 (263)
Q Consensus 157 g~R~~d~r~~~~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKGI~s~eDA~~a 233 (263)
|+|++|+||+|.+| +++++......+.......+...+...++++.++|+||+|||+.|++|||+|||++++||++|
T Consensus 162 G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~a 241 (367)
T PLN02493 162 GRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241 (367)
T ss_pred CcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHH
Confidence 99999999999877 233322111111111122334566777889999999999999999999999999999999999
Q ss_pred HHcCCCEEEEcCCCCCCCCCchhhhccccC
Q 039466 234 VEVGVAGIIVSNHGARQLDYTPATISALEE 263 (263)
Q Consensus 234 ~~~G~dgI~VSNHGGRqlD~~~~~i~~Lpe 263 (263)
+++|||+|+||||||||+|++|+++++|||
T Consensus 242 ~~~Gvd~I~VsnhGGrqld~~~~t~~~L~e 271 (367)
T PLN02493 242 IQAGAAGIIVSNHGARQLDYVPATISALEE 271 (367)
T ss_pred HHcCCCEEEECCCCCCCCCCchhHHHHHHH
Confidence 999999999999999999999999999985
No 3
>PLN02535 glycolate oxidase
Probab=100.00 E-value=4.7e-76 Score=544.11 Aligned_cols=263 Identities=78% Similarity=1.158 Sum_probs=239.3
Q ss_pred CCCCCCChHHHHHHHHHhCCccccccccCCccchHHHHHHHHhccccceeccccccccccccccccCCcccccceeeccc
Q 039466 1 MAAEPVNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTSTLDYKISASIIIAPT 80 (263)
Q Consensus 1 ~~~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~~v~~~d~st~~lG~~~~~Pi~iaP~ 80 (263)
|.++++|++|||+.||++||+.+|+||+||+++|.|+++|+++|++|+|+||+|+||+++||+|+|||+++++||+|||+
T Consensus 1 ~~~~~~~i~d~~~~A~~~lp~~~~~Y~~gga~~e~t~~~N~~af~~~~l~Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~ 80 (364)
T PLN02535 1 MADEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPT 80 (364)
T ss_pred CCcccCCHHHHHHHHHHhCCHHHHHHHhcCCcccHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCChhHHHHHHHHHHCCCceeecCCCCccHHHHHHhccc-------cccCHHHHHHHHHHHHHcCCCEEEEccCC
Q 039466 81 GLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNA-------AYKKRDMAATLVQRAERNGFMALVLTADT 153 (263)
Q Consensus 81 ~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~-------~~~d~~~~~~li~ra~~aG~~al~vTvD~ 153 (263)
|+++++||+||+++||||+++|+||++||.|++|+|||+++.++ +++|++.++++|+||+++||++|+||||+
T Consensus 81 g~~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~ 160 (364)
T PLN02535 81 AMHKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADV 160 (364)
T ss_pred HHhcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecC
Confidence 99999999999999999999999999999999999999987654 56999999999999999999999999999
Q ss_pred CCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEecCCHHHHHHH
Q 039466 154 PRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAIKA 233 (263)
Q Consensus 154 ~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKGI~s~eDA~~a 233 (263)
|+.|+|++|+||+|.+|.++++......+.......+...+...++++.++|++|+|||+.|++|||+|||++++||++|
T Consensus 161 p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~a 240 (364)
T PLN02535 161 PRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAIKA 240 (364)
T ss_pred CCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHHH
Confidence 99999999999999887433332110001111122345567777889999999999999999999999999999999999
Q ss_pred HHcCCCEEEEcCCCCCCCCCchhhhccccC
Q 039466 234 VEVGVAGIIVSNHGARQLDYTPATISALEE 263 (263)
Q Consensus 234 ~~~G~dgI~VSNHGGRqlD~~~~~i~~Lpe 263 (263)
+++|||+|+||||||||+|.+|+++++||+
T Consensus 241 ~~~GvD~I~vsn~GGr~~d~~~~t~~~L~e 270 (364)
T PLN02535 241 VEVGVAGIIVSNHGARQLDYSPATISVLEE 270 (364)
T ss_pred HhcCCCEEEEeCCCcCCCCCChHHHHHHHH
Confidence 999999999999999999999999999975
No 4
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=3.3e-75 Score=540.81 Aligned_cols=260 Identities=32% Similarity=0.517 Sum_probs=234.5
Q ss_pred CCCChHHHHHHHHHhCCccccccccCCccchHHHHHHHHhccccceeccccccccccccccccCCcccccceeecccCCc
Q 039466 4 EPVNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTSTLDYKISASIIIAPTGLH 83 (263)
Q Consensus 4 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~~v~~~d~st~~lG~~~~~Pi~iaP~~~~ 83 (263)
.++|++|||+.||++||+.+|+||+||++||.|+++|+++|++|+|+||+|+||+++||+|+|||+++++||+|||+|++
T Consensus 2 ~~~~i~D~~~~Ar~~Lp~~~~~Y~~gga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~ 81 (381)
T PRK11197 2 IISAASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLETTLFGEKLSMPVALAPVGLT 81 (381)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcceecccccCCCCCCCceEECCcccccchhhChHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChhHHHHHHHHHHCCCceeecCCCCccHHHHHHhccc-------cccCHHHHHHHHHHHHHcCCCEEEEccCCCCC
Q 039466 84 KLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNA-------AYKKRDMAATLVQRAERNGFMALVLTADTPRL 156 (263)
Q Consensus 84 ~l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~-------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~ 156 (263)
+++||+||+++||||+++|++|++||.|++|+|||+++.++ +++|++.++++|+||+++||++|+||||+|+.
T Consensus 82 ~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~ 161 (381)
T PRK11197 82 GMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVP 161 (381)
T ss_pred hccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhccCCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 99999999999999999999999999999999999987654 67999999999999999999999999999999
Q ss_pred cchHHHHhhhhhhh--hhhhhhhc-----------------cccCCCC-----CCCccHHHHHHHhcCCCCCHHHHHHHH
Q 039466 157 DRREADIKNKMIAQ--QLKNLEGL-----------------LSTKVTS-----DTGSNLEAYAKETMDPSLSWKDIEWLR 212 (263)
Q Consensus 157 g~R~~d~r~~~~~p--~~~~~~~~-----------------~~~~~~~-----~~~~~~~~~~~~~~~~~~~W~dl~~lr 212 (263)
|+|++|+||+|.+| +++++... .+.|... ........+...+++++++|+||+|||
T Consensus 162 G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~lr 241 (381)
T PRK11197 162 GARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIR 241 (381)
T ss_pred CCChhhhhcCCCCCCchhhhHHhhhcCchhhhhhccccCCCcccccccccccccchhHHHHHHHhccCCCCCHHHHHHHH
Confidence 99999999999877 33332110 0112211 011122345667789999999999999
Q ss_pred hhcCCCEEEEecCCHHHHHHHHHcCCCEEEEcCCCCCCCCCchhhhccccC
Q 039466 213 SITNLPILIKGVLTREDAIKAVEVGVAGIIVSNHGARQLDYTPATISALEE 263 (263)
Q Consensus 213 ~~~~lPiilKGI~s~eDA~~a~~~G~dgI~VSNHGGRqlD~~~~~i~~Lpe 263 (263)
+.|++|||+|||+|++||++|+++|||+|+||||||||+|+.|+++++|||
T Consensus 242 ~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~ 292 (381)
T PRK11197 242 DFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPA 292 (381)
T ss_pred HhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999985
No 5
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=2.1e-74 Score=532.19 Aligned_cols=254 Identities=40% Similarity=0.598 Sum_probs=228.4
Q ss_pred HHHHHHHHHhCCccccccccCCccchHHHHHHHHhccccceeccccccccccccccccCCcccccceeecccCCcccCCC
Q 039466 9 NAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTSTLDYKISASIIIAPTGLHKLANP 88 (263)
Q Consensus 9 ~d~~~~A~~~l~~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~~v~~~d~st~~lG~~~~~Pi~iaP~~~~~l~~~ 88 (263)
+|||+.||++||+.+|+||+||++||.|+++|+++|++|+|+||+|+||+++||+|++||+++++||+|||+|+++|+||
T Consensus 1 ~D~~~~Ar~~lp~~~~~Y~~~ga~de~t~~~N~~af~~~~l~PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp 80 (361)
T cd04736 1 EDYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWP 80 (361)
T ss_pred ChHHHHHHHhCCHHHHHHHccCcchHHHHHHHHHHHHHcCccccccCCCCCCCCceeECCccccccccccHHHHHhccCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHCCCceeecCCCCccHHHHHHhccc-------cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHH
Q 039466 89 EGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNA-------AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREA 161 (263)
Q Consensus 89 ~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~-------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~ 161 (263)
+||+++||||+++|+||+|||.|++|+|||+++.++ + .|++.++++|+||+++||++|+||||+|+.|+|++
T Consensus 81 ~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~~~~wfQLY~-~~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~ 159 (361)
T cd04736 81 NGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQLYV-VHRELAELLVKRALAAGYTTLVLTTDVAVNGYRER 159 (361)
T ss_pred cHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcCCCeEEEEEe-cCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchh
Confidence 999999999999999999999999999999988654 4 46999999999999999999999999999999999
Q ss_pred HHhhhhhhh---hhhhhhhc----------------cccCCCCC---CCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCE
Q 039466 162 DIKNKMIAQ---QLKNLEGL----------------LSTKVTSD---TGSNLEAYAKETMDPSLSWKDIEWLRSITNLPI 219 (263)
Q Consensus 162 d~r~~~~~p---~~~~~~~~----------------~~~~~~~~---~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPi 219 (263)
|+||+|.+| +++++... .+.+.... ...+...+...++++.++|++|+|||+.|++||
T Consensus 160 d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pv 239 (361)
T cd04736 160 DLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKL 239 (361)
T ss_pred hhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCE
Confidence 999999877 33332110 01111110 111244566667899999999999999999999
Q ss_pred EEEecCCHHHHHHHHHcCCCEEEEcCCCCCCCCCchhhhccccC
Q 039466 220 LIKGVLTREDAIKAVEVGVAGIIVSNHGARQLDYTPATISALEE 263 (263)
Q Consensus 220 ilKGI~s~eDA~~a~~~G~dgI~VSNHGGRqlD~~~~~i~~Lpe 263 (263)
|+|||+++|||++|+++|||||+||||||||+|++|+++++|||
T Consensus 240 iiKgV~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~e 283 (361)
T cd04736 240 LVKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAE 283 (361)
T ss_pred EEecCCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999985
No 6
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=100.00 E-value=3.3e-73 Score=528.26 Aligned_cols=258 Identities=37% Similarity=0.562 Sum_probs=229.3
Q ss_pred CCChHHHHHHHHHhCCccccccccCCccchHHHHHHHHhccccceeccccccccccccccccCCcccccceeecccCCcc
Q 039466 5 PVNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTSTLDYKISASIIIAPTGLHK 84 (263)
Q Consensus 5 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~~v~~~d~st~~lG~~~~~Pi~iaP~~~~~ 84 (263)
++|++|||+.||++||+.+|+||+||++||.|+++|+++|++|+|+||+|+||+++||+|+|||+++++||+|||+|+++
T Consensus 18 ~~~i~D~~~~Ar~~lp~~~~~y~~gGa~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~ 97 (383)
T cd03332 18 PVDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQE 97 (383)
T ss_pred cCCHHHHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhcCccccccccCCCCCCceeeCCccccccceechHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHCCCceeecCCCCccHHHHHHhcc-c-------cccCHHHHHHHHHHHHHcCCCEEEEccCCCCC
Q 039466 85 LANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCN-A-------AYKKRDMAATLVQRAERNGFMALVLTADTPRL 156 (263)
Q Consensus 85 l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~-~-------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~ 156 (263)
++||+||+++||||+++|++|++||.|++|+|||+++.+ + +++|++.++++|+||+++||++|+||||+|+.
T Consensus 98 l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~ 177 (383)
T cd03332 98 LFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSL 177 (383)
T ss_pred hcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 999999999999999999999999999999999998844 3 56799999999999999999999999999999
Q ss_pred cchHHHHhhhhhhhh-----hhhhh-hc----cccCCC-CC------CCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCE
Q 039466 157 DRREADIKNKMIAQQ-----LKNLE-GL----LSTKVT-SD------TGSNLEAYAKETMDPSLSWKDIEWLRSITNLPI 219 (263)
Q Consensus 157 g~R~~d~r~~~~~p~-----~~~~~-~~----~~~~~~-~~------~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPi 219 (263)
|+|++|+||+|. |. +.++. .. ...... +. .......+...+.++.++|++|+|||+.|++||
T Consensus 178 g~Rerd~r~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pv 256 (383)
T cd03332 178 GWRPRDLDLGYL-PFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPI 256 (383)
T ss_pred CCchhhhhcCCC-CCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCE
Confidence 999999999983 41 11110 00 000000 00 111234455556789999999999999999999
Q ss_pred EEEecCCHHHHHHHHHcCCCEEEEcCCCCCCCCCchhhhccccC
Q 039466 220 LIKGVLTREDAIKAVEVGVAGIIVSNHGARQLDYTPATISALEE 263 (263)
Q Consensus 220 ilKGI~s~eDA~~a~~~G~dgI~VSNHGGRqlD~~~~~i~~Lpe 263 (263)
|+|||++++||++|+++|||+|+||||||||+|++|+|+++|||
T Consensus 257 ivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~e 300 (383)
T cd03332 257 VLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPE 300 (383)
T ss_pred EEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999985
No 7
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=100.00 E-value=3.6e-73 Score=524.99 Aligned_cols=255 Identities=31% Similarity=0.490 Sum_probs=227.4
Q ss_pred CCCChHHHHHHHHHhCCccccccccCCccchHHHHHHHHhccccceeccccccccccccccccCCcccccceeecccCCc
Q 039466 4 EPVNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTSTLDYKISASIIIAPTGLH 83 (263)
Q Consensus 4 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~~v~~~d~st~~lG~~~~~Pi~iaP~~~~ 83 (263)
.++|++|||+.||++||+.+|+||+||++||.|+++|+++|++|+|+||+|+||+++||+|+|||+++++||+|||+|++
T Consensus 12 ~~~~i~D~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~~ 91 (367)
T TIGR02708 12 DFINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTEIEFLGHKLKSPFIMAPVAAH 91 (367)
T ss_pred CCCCHHHHHHHHHHhCCHHHHHHHhcCCchHHHHHHHHHHHHhcCeecccccCCCCCCCceeeCCcccccccccCcHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChhHHHHHHHHHHCCCceeecCCCCccHHHHHHhc-cc-------cccCHHHHHHHHHHHHHcCCCEEEEccCCCC
Q 039466 84 KLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASC-NA-------AYKKRDMAATLVQRAERNGFMALVLTADTPR 155 (263)
Q Consensus 84 ~l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~-~~-------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~ 155 (263)
+++||+||+++||||+++|++|++|+.|++|+|||+++. ++ +++|+++++++|+||+++||++|+||||+|+
T Consensus 92 ~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~ 171 (367)
T TIGR02708 92 KLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATV 171 (367)
T ss_pred hccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 999999999999999999999999999999999999884 33 6799999999999999999999999999999
Q ss_pred CcchHHHHhhhhhhh-hhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEecCCHHHHHHHH
Q 039466 156 LDRREADIKNKMIAQ-QLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAIKAV 234 (263)
Q Consensus 156 ~g~R~~d~r~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~ 234 (263)
.|+|++|+||+|.+| ....... .+........ .......++.++|++|+||++.|++|||+|||+++|||++|.
T Consensus 172 ~g~R~~d~r~~~~~p~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~w~~i~~l~~~~~~PvivKGv~~~eda~~a~ 246 (367)
T TIGR02708 172 GGNREVDVRNGFVFPVGMPIVQE----YLPTGAGKSM-DNVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQCPEDADRAL 246 (367)
T ss_pred CCcchhhhhcCCCCCCccchhhh----hcccCCccch-hhhccccCCCCCHHHHHHHHHhcCCCEEEeCCCCHHHHHHHH
Confidence 999999999999877 2111100 0100000000 111223467899999999999999999999999999999999
Q ss_pred HcCCCEEEEcCCCCCCCCCchhhhccccC
Q 039466 235 EVGVAGIIVSNHGARQLDYTPATISALEE 263 (263)
Q Consensus 235 ~~G~dgI~VSNHGGRqlD~~~~~i~~Lpe 263 (263)
++|||+|+||||||||+|++|+++++|||
T Consensus 247 ~~Gvd~I~VS~HGGrq~~~~~a~~~~L~e 275 (367)
T TIGR02708 247 KAGASGIWVTNHGGRQLDGGPAAFDSLQE 275 (367)
T ss_pred HcCcCEEEECCcCccCCCCCCcHHHHHHH
Confidence 99999999999999999999999999985
No 8
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=4.2e-71 Score=510.16 Aligned_cols=256 Identities=38% Similarity=0.547 Sum_probs=228.2
Q ss_pred CCCChHHHHHHHHHhCCccccccccCCccchHHHHHHHHhccccceeccccccccccccccccCCcccccceeecccCCc
Q 039466 4 EPVNLNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTSTLDYKISASIIIAPTGLH 83 (263)
Q Consensus 4 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~~v~~~d~st~~lG~~~~~Pi~iaP~~~~ 83 (263)
.++|++|||+.||++||+++|+||+||++||.|+++|+++|++|+|+||+|+||+++||+|++||+++++||+|||||++
T Consensus 4 ~~~~i~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~a~~~~~l~prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~ 83 (351)
T cd04737 4 DIINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAH 83 (351)
T ss_pred ccCcHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcCeechhccCCCCCCCceEeCCccccchhhhHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChhHHHHHHHHHHCCCceeecCCCCccHHHHHHhcc-c-------cccCHHHHHHHHHHHHHcCCCEEEEccCCCC
Q 039466 84 KLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCN-A-------AYKKRDMAATLVQRAERNGFMALVLTADTPR 155 (263)
Q Consensus 84 ~l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~-~-------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~ 155 (263)
+++||+||+++||+|+++|++|++|+.+++|+|||+++.+ + +++|++.++++++||+++||++|+||||+|+
T Consensus 84 ~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~ 163 (351)
T cd04737 84 GLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATV 163 (351)
T ss_pred HhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 9999999999999999999999999999999999998873 3 5689999999999999999999999999999
Q ss_pred CcchHHHHhhhhhhh-hhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEecCCHHHHHHHH
Q 039466 156 LDRREADIKNKMIAQ-QLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAIKAV 234 (263)
Q Consensus 156 ~g~R~~d~r~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~ 234 (263)
.|+|++|+||+|.+| .+......... . . ..... ......+++.++|++|+|||+.|++||++|||++++||++|+
T Consensus 164 ~g~R~~d~r~~~~~p~~~~~~~~~~~~-~-~-~~~~~-~~~~~~~~~~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~a~ 239 (351)
T cd04737 164 GGNREADIRNKFQFPFGMPNLNHFSEG-T-G-KGKGI-SEIYAAAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADVAI 239 (351)
T ss_pred CCcchHHHHhcCCCCcccchhhhhccc-c-c-cCcch-hhhhhhccCCCCHHHHHHHHHHhCCcEEEecCCCHHHHHHHH
Confidence 999999999999877 21111110000 0 0 00001 112234677899999999999999999999999999999999
Q ss_pred HcCCCEEEEcCCCCCCCCCchhhhccccC
Q 039466 235 EVGVAGIIVSNHGARQLDYTPATISALEE 263 (263)
Q Consensus 235 ~~G~dgI~VSNHGGRqlD~~~~~i~~Lpe 263 (263)
++|||+|+||||||||+|++|+++++||+
T Consensus 240 ~~G~d~I~vsnhGGr~ld~~~~~~~~l~~ 268 (351)
T cd04737 240 NAGADGIWVSNHGGRQLDGGPASFDSLPE 268 (351)
T ss_pred HcCCCEEEEeCCCCccCCCCchHHHHHHH
Confidence 99999999999999999999999999875
No 9
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=100.00 E-value=5.1e-69 Score=498.63 Aligned_cols=249 Identities=44% Similarity=0.664 Sum_probs=216.2
Q ss_pred HHHhCCccccccccCCccchHHHHHHHHhccccceeccccccccccccccccCCcccccceeecccCCcccCCChhHHHH
Q 039466 15 ARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTSTLDYKISASIIIAPTGLHKLANPEGEVAT 94 (263)
Q Consensus 15 A~~~l~~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~~v~~~d~st~~lG~~~~~Pi~iaP~~~~~l~~~~ge~a~ 94 (263)
||++||+..|+||+||+++|.|+++|+++|++|+|+||+|++++++||+|+|||+++++||+|||||++++.||++|.++
T Consensus 1 Ar~~lp~~~~~yi~gga~~e~t~~~N~~af~~i~l~prvL~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~l 80 (356)
T PF01070_consen 1 ARRRLPPRVFDYIDGGAGDEVTFRRNREAFDRIRLRPRVLRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERAL 80 (356)
T ss_dssp HHHHS-HHHHHHHHHHSTTTHHHHHHHHGGGGEEE---SSSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHH
T ss_pred CccccCHHHHHHHHHcCCCcHHHHHHHHHHHHhcccccccCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCceeecCCCCccHHHHHHhccc-------cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhh
Q 039466 95 ARAAASCNTIMVLSFTSSCSIEEVAASCNA-------AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKM 167 (263)
Q Consensus 95 AraA~~~gi~~~lss~s~~sieeV~~~~~~-------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~ 167 (263)
||+|+++|++|++||++++++|||+++.++ +++|++.+.++++||+++||+||+||||+|+.|+|++|+|++|
T Consensus 81 AraA~~~Gi~~~lss~s~~~~e~ia~~~~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~ 160 (356)
T PF01070_consen 81 ARAAAKAGIPMMLSSQSSASLEEIAAASGGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGF 160 (356)
T ss_dssp HHHHHHHTSEEEEETTCSSCHHHHHHHCTSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTC
T ss_pred HHHHhccCcceeccCCccCCHHHHHhhccCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCccccccccc
Confidence 999999999999999999999999988553 6789999999999999999999999999999999999999999
Q ss_pred hhh---hhhhhhhc----c-----ccCC---C-CCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEecCCHHHHH
Q 039466 168 IAQ---QLKNLEGL----L-----STKV---T-SDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAI 231 (263)
Q Consensus 168 ~~p---~~~~~~~~----~-----~~~~---~-~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKGI~s~eDA~ 231 (263)
.+| +++++... . ..+. . ........++.+.++++.++|++|+||++.|++|||||||+++|||+
T Consensus 161 ~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~ 240 (356)
T PF01070_consen 161 SVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAK 240 (356)
T ss_dssp CCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHH
T ss_pred CCCcccccccccccccCcccccccccccccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHH
Confidence 877 23333211 0 0000 0 11233466788888899999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEcCCCCCCCCCchhhhccccC
Q 039466 232 KAVEVGVAGIIVSNHGARQLDYTPATISALEE 263 (263)
Q Consensus 232 ~a~~~G~dgI~VSNHGGRqlD~~~~~i~~Lpe 263 (263)
+|+++||+||+||||||||||++|+|+++|||
T Consensus 241 ~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~ 272 (356)
T PF01070_consen 241 RAVDAGVDGIDVSNHGGRQLDWGPPTIDALPE 272 (356)
T ss_dssp HHHHTT-SEEEEESGTGTSSTTS-BHHHHHHH
T ss_pred HHHhcCCCEEEecCCCcccCccccccccccHH
Confidence 99999999999999999999999999999985
No 10
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=100.00 E-value=7.7e-68 Score=488.26 Aligned_cols=250 Identities=42% Similarity=0.649 Sum_probs=224.6
Q ss_pred HHHHHHHHHhCCccccccccCCccchHHHHHHHHhccccceeccccccccccccccccCCcccccceeecccCCcccCCC
Q 039466 9 NAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTSTLDYKISASIIIAPTGLHKLANP 88 (263)
Q Consensus 9 ~d~~~~A~~~l~~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~~v~~~d~st~~lG~~~~~Pi~iaP~~~~~l~~~ 88 (263)
+|||+.||++||+.+|+||+||++||+|+++|+++|++|+|+||+|++++++||+|+|||+++++||+|||||+++++||
T Consensus 1 ~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~ 80 (344)
T cd02922 1 HDFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHP 80 (344)
T ss_pred ChHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHCCCceeecCCCCccHHHHHHh-ccc--------cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcch
Q 039466 89 EGEVATARAAASCNTIMVLSFTSSCSIEEVAAS-CNA--------AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRR 159 (263)
Q Consensus 89 ~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~-~~~--------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R 159 (263)
++|.++||||+++|++|++||++++|+|||+++ .|+ +++|++.++++++||+++||++|+||||+|+.|+|
T Consensus 81 ~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r 160 (344)
T cd02922 81 DGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKR 160 (344)
T ss_pred hHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcc
Confidence 999999999999999999999999999999877 342 57899999999999999999999999999999999
Q ss_pred HHHHhhhhhhh-hhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCC
Q 039466 160 EADIKNKMIAQ-QLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGV 238 (263)
Q Consensus 160 ~~d~r~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~ 238 (263)
++|+||+|..| .+..-. ........+...+.....++..+|++|+||++.|++|||+|||++++||++|.++||
T Consensus 161 ~~d~r~~~~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G~ 235 (344)
T cd02922 161 ERDERLKAEEAVSDGPAG-----KKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYGV 235 (344)
T ss_pred hhhhhhcCCcCccccccc-----cccccccchHHHHHhhccCCCCCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHcCC
Confidence 99999999876 110000 000001112333444566788999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCCCCCCchhhhccccC
Q 039466 239 AGIIVSNHGARQLDYTPATISALEE 263 (263)
Q Consensus 239 dgI~VSNHGGRqlD~~~~~i~~Lpe 263 (263)
|+|+||||||||+|++++|+++||+
T Consensus 236 d~I~vsnhgG~~~d~~~~~~~~L~~ 260 (344)
T cd02922 236 DGIVLSNHGGRQLDTAPAPIEVLLE 260 (344)
T ss_pred CEEEEECCCcccCCCCCCHHHHHHH
Confidence 9999999999999999999999874
No 11
>PLN02979 glycolate oxidase
Probab=100.00 E-value=6.8e-63 Score=453.12 Aligned_cols=244 Identities=52% Similarity=0.800 Sum_probs=205.6
Q ss_pred CccccccccCCccchHH--HHHHHHhc--cccceeccccccccccccccccCCcccccceeecccCCcccCCChhHHHHH
Q 039466 20 PKMYYDFYAGGVENQYT--LKENMEAF--HGITFWPRILVDVCRIDISTSTLDYKISASIIIAPTGLHKLANPEGEVATA 95 (263)
Q Consensus 20 ~~~~~~y~~~ga~~e~t--~~~N~~af--~~~~l~pr~L~~v~~~d~st~~lG~~~~~Pi~iaP~~~~~l~~~~ge~a~A 95 (263)
.++-|.|+.---+--.| +-..+.++ .-|+|+||+|+||+++||+|++||+++++||+|||+|+++++||+||+++|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrPRvLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~A 92 (366)
T PLN02979 13 DPMHFSFLFVRQEILFTIGFFKRCDALLGGFCDFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATA 92 (366)
T ss_pred CccceehhhhhhhHHhhhhhHHHhHHhhCCeeEEECccccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHH
Confidence 44566666543333333 22233332 258999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCceeecCCCCccHHHHHHhccc-------cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhh
Q 039466 96 RAAASCNTIMVLSFTSSCSIEEVAASCNA-------AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMI 168 (263)
Q Consensus 96 raA~~~gi~~~lss~s~~sieeV~~~~~~-------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~ 168 (263)
|||+++|++|++|++|++|+|||+++.++ +++|++.++++|+||+++||++|+||||+|+.|+|++|+||+|.
T Consensus 93 RAA~~agi~~~lSt~ss~slEeIa~a~~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~ 172 (366)
T PLN02979 93 RAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFT 172 (366)
T ss_pred HHHHHcCCCeeeccCcCCCHHHHHhccCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCC
Confidence 99999999999999999999999987654 67899999999999999999999999999999999999999998
Q ss_pred hh---hhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEEcC
Q 039466 169 AQ---QLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 169 ~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~VSN 245 (263)
+| +++++......+.......+...+...+++++++|+||+|||+.|++|||+|||++++||++|+++|||+|+|||
T Consensus 173 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~Vsn 252 (366)
T PLN02979 173 LPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSN 252 (366)
T ss_pred CCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECC
Confidence 87 333432111111111122345567777889999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCchhhhccccC
Q 039466 246 HGARQLDYTPATISALEE 263 (263)
Q Consensus 246 HGGRqlD~~~~~i~~Lpe 263 (263)
|||||+|++|+|+++|||
T Consensus 253 hGGrqld~~p~t~~~L~e 270 (366)
T PLN02979 253 HGARQLDYVPATISALEE 270 (366)
T ss_pred CCcCCCCCchhHHHHHHH
Confidence 999999999999999985
No 12
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=100.00 E-value=8.6e-56 Score=408.66 Aligned_cols=255 Identities=38% Similarity=0.469 Sum_probs=229.7
Q ss_pred hHHHHHHHHHhCCccccccccCCccchHHHHHHHHhccccceeccccccccccccccccCCcccccceeecccCCcccCC
Q 039466 8 LNAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTSTLDYKISASIIIAPTGLHKLAN 87 (263)
Q Consensus 8 ~~d~~~~A~~~l~~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~~v~~~d~st~~lG~~~~~Pi~iaP~~~~~l~~ 87 (263)
+.|+++.|++++| ..|+|+.+|+++|+|+++|+++|++|.|+||+|++++++|++|+|||+++++||+|+|||+++|.|
T Consensus 1 ~~~~~~~a~~~~~-~~~hy~~~~~~~e~t~~~n~~~f~~i~l~~~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~ 79 (360)
T COG1304 1 VADLRRAAQRRLP-KAFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAH 79 (360)
T ss_pred CcchHHHHhhhcc-hHhHHHHhhccccccHhhhhhhhhhheeecccCCCcccCccceEecCccccCCEEEeccccccccC
Confidence 3689999999999 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHCCCceeecCCCCccHHHHHHhccc---cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHh
Q 039466 88 PEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNA---AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIK 164 (263)
Q Consensus 88 ~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~---~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r 164 (263)
++||...|++|+++|+++++|+.+++++|++.+..+- +.+||+.+..+++|++.+||+++++|+|+++.|+|++|.+
T Consensus 80 ~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~~d~~ 159 (360)
T COG1304 80 PEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPPFQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERERDAV 159 (360)
T ss_pred hhhHHHHHHHHHHcCCCeeeeccccCcHHHhhcCcchhhhhHHHHHhhHHHHHHHHhcCCcceeeccCccchHHHHHHHH
Confidence 9999999999999999999999999999999877652 6689999999999999999999999999999999999999
Q ss_pred hhhhhh---hhhhhhhccc---cCCCC-CCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcC
Q 039466 165 NKMIAQ---QLKNLEGLLS---TKVTS-DTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVG 237 (263)
Q Consensus 165 ~~~~~p---~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G 237 (263)
+++..| ...|+.+... ++... .....+.++.....+|.++|++++||++.|.+|+++|||++++|+..|.+.|
T Consensus 160 ~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~~~~D~~~a~~tg 239 (360)
T COG1304 160 NGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGAGGTG 239 (360)
T ss_pred hccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhcCCCcccHHHHhHHHHhcCCcHHHhCCCCHHHHHhhccCC
Confidence 999866 2333322110 01100 0112356788888999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCCCCCCchhhhccccC
Q 039466 238 VAGIIVSNHGARQLDYTPATISALEE 263 (263)
Q Consensus 238 ~dgI~VSNHGGRqlD~~~~~i~~Lpe 263 (263)
+++|+||||||||||+++||++.|||
T Consensus 240 ~~~I~vsnhggrqlD~g~st~~~L~e 265 (360)
T COG1304 240 ADGIEVSNHGGRQLDWGISTADSLPE 265 (360)
T ss_pred ceEEEEEcCCCccccCCCChHHHHHH
Confidence 99999999999999999999999986
No 13
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=100.00 E-value=1.3e-45 Score=335.75 Aligned_cols=212 Identities=50% Similarity=0.768 Sum_probs=198.2
Q ss_pred HHHHHHHHHhCCccccccccCCccchHHHHHHHHhccccceeccccccccccccccccCCcccccceeecccCCcccCCC
Q 039466 9 NAFQELARLALPKMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTSTLDYKISASIIIAPTGLHKLANP 88 (263)
Q Consensus 9 ~d~~~~A~~~l~~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~~v~~~d~st~~lG~~~~~Pi~iaP~~~~~l~~~ 88 (263)
.|||..|+++||+..|.|+.+|++++.|+++|+.+|++|+|+||+|++++++||+|+|||+++++||+|+||++.++.|+
T Consensus 1 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~ 80 (299)
T cd02809 1 ADLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHP 80 (299)
T ss_pred ChHHHHHHHhCCHHHhhhhccccchHHHHHHHHHHHHhceeecccCCCCCCCCCceEECCeecCCCeeeCcccccccCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred hhHHHHHHHHHHCCCceeecCCCCccHHHHHHhccc-----c--ccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHH
Q 039466 89 EGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNA-----A--YKKRDMAATLVQRAERNGFMALVLTADTPRLDRREA 161 (263)
Q Consensus 89 ~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~-----~--~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~ 161 (263)
+++.++|++|+++|+++++|++++.++|++++..+. + ..|++.+.++++++++.|+++|.+++|+|+.|.|
T Consensus 81 ~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-- 158 (299)
T cd02809 81 DGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR-- 158 (299)
T ss_pred hHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC--
Confidence 999999999999999999999999999999987643 2 2488899999999999999999999999863221
Q ss_pred HHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEE
Q 039466 162 DIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGI 241 (263)
Q Consensus 162 d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI 241 (263)
..|+.|+||++.+++||++|+|+++++|++|.++|+|+|
T Consensus 159 -----------------------------------------~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I 197 (299)
T cd02809 159 -----------------------------------------LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGI 197 (299)
T ss_pred -----------------------------------------CCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEE
Confidence 578999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCchhhhccccC
Q 039466 242 IVSNHGARQLDYTPATISALEE 263 (263)
Q Consensus 242 ~VSNHGGRqlD~~~~~i~~Lpe 263 (263)
+||||||||+|+.|++++.|++
T Consensus 198 ~v~~~gG~~~~~g~~~~~~l~~ 219 (299)
T cd02809 198 VVSNHGGRQLDGAPATIDALPE 219 (299)
T ss_pred EEcCCCCCCCCCCcCHHHHHHH
Confidence 9999999999999999988763
No 14
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.92 E-value=2.4e-25 Score=204.95 Aligned_cols=169 Identities=22% Similarity=0.251 Sum_probs=126.7
Q ss_pred HHHhccccceeccccc--cccccccccccCCcccccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCCCC-----
Q 039466 40 NMEAFHGITFWPRILV--DVCRIDISTSTLDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSS----- 112 (263)
Q Consensus 40 N~~af~~~~l~pr~L~--~v~~~d~st~~lG~~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~----- 112 (263)
+...|++|+|+|+.|+ +++++||+|+|||+++++||+++||++....-.+...++|++|.++|++|++||++.
T Consensus 18 ~~~~~d~i~l~~~~l~~~~~~~id~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~ 97 (326)
T cd02811 18 GSTGFDDVRLVHNALPELDLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALEDP 97 (326)
T ss_pred CCCChhhEEEecccCCCCCcccCCCeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccCh
Confidence 5567999999999999 789999999999999999999999987532112234599999999999999999963
Q ss_pred ---ccHHHHHHhccc--cc------c----CHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhh
Q 039466 113 ---CSIEEVAASCNA--AY------K----KRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEG 177 (263)
Q Consensus 113 ---~sieeV~~~~~~--~~------~----d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~ 177 (263)
.+++.+++..++ +. . +.+... +..+..+++++-++++.++
T Consensus 98 e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~---~~i~~~~adalel~l~~~q---------------------- 152 (326)
T cd02811 98 ELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEAR---RAVEMIEADALAIHLNPLQ---------------------- 152 (326)
T ss_pred hhhhHHHHHHHhCCCceEEeecCccccCCCCHHHHH---HHHHhcCCCcEEEeCcchH----------------------
Confidence 234455555552 11 1 333332 3334557778888876432
Q ss_pred ccccCCCCCCCccHHHHHHHhcCCCC-CH-HHHHHHHhhcCCCEEEEec---CCHHHHHHHHHcCCCEEEEcCCCC
Q 039466 178 LLSTKVTSDTGSNLEAYAKETMDPSL-SW-KDIEWLRSITNLPILIKGV---LTREDAIKAVEVGVAGIIVSNHGA 248 (263)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~W-~dl~~lr~~~~lPiilKGI---~s~eDA~~a~~~G~dgI~VSNHGG 248 (263)
+..++..+.++ .| +.|++|++.+++||++|++ ++.++|+.+.++|+|+|+||||||
T Consensus 153 ---------------~~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GG 213 (326)
T cd02811 153 ---------------EAVQPEGDRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGG 213 (326)
T ss_pred ---------------hhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCC
Confidence 11111122333 35 5799999999999999998 999999999999999999999999
No 15
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.92 E-value=7.6e-25 Score=203.43 Aligned_cols=170 Identities=21% Similarity=0.240 Sum_probs=125.5
Q ss_pred Hhccccceeccccc--cccccccccccCCcccccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCCCC-------
Q 039466 42 EAFHGITFWPRILV--DVCRIDISTSTLDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSS------- 112 (263)
Q Consensus 42 ~af~~~~l~pr~L~--~v~~~d~st~~lG~~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~------- 112 (263)
..|++|+|.|+.|+ +++++||||+|||+++++||+|+||++..---.+...++|++|+++|+++++||++.
T Consensus 28 ~~~d~v~l~~~~lp~~~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~~ 107 (352)
T PRK05437 28 TGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPEL 107 (352)
T ss_pred CChheEEEecccCCCCChhhccceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccChhh
Confidence 46999999999999 678999999999999999999999997531112334599999999999999999873
Q ss_pred -ccHHHHHHhccc--cc------cCHHH-HHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccC
Q 039466 113 -CSIEEVAASCNA--AY------KKRDM-AATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTK 182 (263)
Q Consensus 113 -~sieeV~~~~~~--~~------~d~~~-~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~ 182 (263)
.+++.|++.+|+ +. ..... ...+.+.++..+++++-++++.++
T Consensus 108 ~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~q--------------------------- 160 (352)
T PRK05437 108 ADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQ--------------------------- 160 (352)
T ss_pred HHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccch---------------------------
Confidence 234445555543 11 11011 223333445667778887776432
Q ss_pred CCCCCCccHHHHHHHhcCCCCC-H-HHHHHHHhhcCCCEEEEec---CCHHHHHHHHHcCCCEEEEcCCCC
Q 039466 183 VTSDTGSNLEAYAKETMDPSLS-W-KDIEWLRSITNLPILIKGV---LTREDAIKAVEVGVAGIIVSNHGA 248 (263)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~-W-~dl~~lr~~~~lPiilKGI---~s~eDA~~a~~~G~dgI~VSNHGG 248 (263)
+..++..+.+++ | +.|++|++.+++||++|++ +++++|+.+.++|||+|+||||||
T Consensus 161 ----------e~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GG 221 (352)
T PRK05437 161 ----------ELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGG 221 (352)
T ss_pred ----------hhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCC
Confidence 111112223332 3 5799999999999999999 999999999999999999999999
No 16
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.89 E-value=3.6e-23 Score=191.04 Aligned_cols=172 Identities=19% Similarity=0.218 Sum_probs=125.6
Q ss_pred Hhccccceecccccc--ccccccccccCCcccccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCCCCc------
Q 039466 42 EAFHGITFWPRILVD--VCRIDISTSTLDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSC------ 113 (263)
Q Consensus 42 ~af~~~~l~pr~L~~--v~~~d~st~~lG~~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~------ 113 (263)
..|++|+|.|+.|+. ++++||||+|||+++++||+|+||++..-.-..-...+|++|+++|++++++|++..
T Consensus 21 ~~~~~~~~~~~~lp~~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~ 100 (333)
T TIGR02151 21 TGFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAALKDPET 100 (333)
T ss_pred CCcceEEEecCCCCCCCcccCCCceEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhh
Confidence 349999999999994 689999999999999999999999875311011234899999999999999998731
Q ss_pred --cHHHHHHhccc--cccCH------H-HHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccC
Q 039466 114 --SIEEVAASCNA--AYKKR------D-MAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTK 182 (263)
Q Consensus 114 --sieeV~~~~~~--~~~d~------~-~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~ 182 (263)
+.+.+++..++ +..|. + ...+..+.++..++.++-++++.++
T Consensus 101 ~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q--------------------------- 153 (333)
T TIGR02151 101 ADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQ--------------------------- 153 (333)
T ss_pred HhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccc---------------------------
Confidence 23345554443 22211 1 1223334445566778888876543
Q ss_pred CCCCCCccHHHHHHHhcCCCC-CH-HHHHHHHhhcCCCEEEEec---CCHHHHHHHHHcCCCEEEEcCCCCCC
Q 039466 183 VTSDTGSNLEAYAKETMDPSL-SW-KDIEWLRSITNLPILIKGV---LTREDAIKAVEVGVAGIIVSNHGARQ 250 (263)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~-~W-~dl~~lr~~~~lPiilKGI---~s~eDA~~a~~~G~dgI~VSNHGGRq 250 (263)
+..++..+..+ .| +.|++|++.+++||++|++ +++++|+++.++|+|+|+||||||+.
T Consensus 154 ----------~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~ 216 (333)
T TIGR02151 154 ----------ELVQPEGDRNFKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTS 216 (333)
T ss_pred ----------cccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCc
Confidence 11112233334 35 6799999999999999998 99999999999999999999999964
No 17
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.76 E-value=4.6e-18 Score=155.31 Aligned_cols=156 Identities=13% Similarity=0.054 Sum_probs=114.9
Q ss_pred hccccceeccccccc--cccccccccCCcccccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCCCCccHHHH--
Q 039466 43 AFHGITFWPRILVDV--CRIDISTSTLDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEV-- 118 (263)
Q Consensus 43 af~~~~l~pr~L~~v--~~~d~st~~lG~~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV-- 118 (263)
.|++++|+|+.|+.. +++|++|+|+|.++++||+|++|. ...+..+|++|++.|...++-- .++|+-
T Consensus 3 ~FddV~lvp~~lp~~s~~dVdlst~~~~~~l~~P~~inAM~------t~in~~LA~~a~~~G~~~i~hK---~~~E~~~s 73 (321)
T TIGR01306 3 DYEDIQLIPNKCIVNSRSECDTSVTLGKHKFKLPVVPANMQ------TIIDEKLAEQLAENGYFYIMHR---FDEESRIP 73 (321)
T ss_pred CcccEEEecCCCCCCCHHHceeeEEECCcEecCcEEeeccc------hhhhHHHHHHHHHcCCEEEEec---CCHHHHHH
Confidence 599999999999954 799999999999999999999994 3688899999999998777644 255553
Q ss_pred --HHhccc-------cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCc
Q 039466 119 --AASCNA-------AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGS 189 (263)
Q Consensus 119 --~~~~~~-------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~ 189 (263)
.+..+. +-...+. .+.++...++|..+-+|.+|+..
T Consensus 74 fvrk~k~~~L~v~~SvG~t~e~-~~r~~~lv~a~~~~d~i~~D~ah---------------------------------- 118 (321)
T TIGR01306 74 FIKDMQERGLFASISVGVKACE-YEFVTQLAEEALTPEYITIDIAH---------------------------------- 118 (321)
T ss_pred HHHhccccccEEEEEcCCCHHH-HHHHHHHHhcCCCCCEEEEeCcc----------------------------------
Confidence 222221 1111111 12233333456434444456432
Q ss_pred cHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcCCCCCCC
Q 039466 190 NLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSNHGARQL 251 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSNHGGRql 251 (263)
.+...-++.|+|||+.|+.|+|+|| |.++++|+.+.++|||+|.||+|+|++.
T Consensus 119 ---------g~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~ 172 (321)
T TIGR01306 119 ---------GHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVC 172 (321)
T ss_pred ---------CchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccc
Confidence 1112246789999999999988888 9999999999999999999999999975
No 18
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.67 E-value=4.2e-16 Score=142.99 Aligned_cols=156 Identities=12% Similarity=0.039 Sum_probs=111.7
Q ss_pred hccccceecccccc--ccccccccccCCcccccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCCCCccHHHHH-
Q 039466 43 AFHGITFWPRILVD--VCRIDISTSTLDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVA- 119 (263)
Q Consensus 43 af~~~~l~pr~L~~--v~~~d~st~~lG~~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV~- 119 (263)
.|++++|+|..|+. ++++|+||+|+|.++++||||++|. ...+..+|++|++.|...++-- +++|+..
T Consensus 6 ~Fddv~lv~~~lp~~s~~dvdlst~~~~~~l~~P~~inAM~------t~iN~~LA~~a~~~G~~~~~~k---~~~e~~~~ 76 (326)
T PRK05458 6 DYEDIQLIPNKCIVNSRSECDTSVTLGPRTFKLPVVPANMQ------TIIDEKIAEWLAENGYFYIMHR---FDPEARIP 76 (326)
T ss_pred CccceEEecCCCCCCCHHHcccceEECCcEecCcEEEeccc------chhHHHHHHHHHHcCCEEEEec---CCHHHHHH
Confidence 49999999999995 4799999999999999999999994 2678899999999987766643 3556533
Q ss_pred ---Hhccc-------cccCHHHHHHHHHHHHHcCC--CEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCC
Q 039466 120 ---ASCNA-------AYKKRDMAATLVQRAERNGF--MALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDT 187 (263)
Q Consensus 120 ---~~~~~-------~~~d~~~~~~li~ra~~aG~--~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~ 187 (263)
+..+. +-.+.+.. +.++...++|+ ++|+ +|+.. |.
T Consensus 77 ~~r~~~~~~l~v~~~vg~~~~~~-~~~~~Lv~ag~~~d~i~--iD~a~-gh----------------------------- 123 (326)
T PRK05458 77 FIKDMHEQGLIASISVGVKDDEY-DFVDQLAAEGLTPEYIT--IDIAH-GH----------------------------- 123 (326)
T ss_pred HHHhccccccEEEEEecCCHHHH-HHHHHHHhcCCCCCEEE--EECCC-Cc-----------------------------
Confidence 23231 22223222 22333345655 5554 55432 00
Q ss_pred CccHHHHHHHhcCCCCCHHHHHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCCEEEEcCCCCCCCCC
Q 039466 188 GSNLEAYAKETMDPSLSWKDIEWLRSITN-LPILIKGVLTREDAIKAVEVGVAGIIVSNHGARQLDY 253 (263)
Q Consensus 188 ~~~~~~~~~~~~~~~~~W~dl~~lr~~~~-lPiilKGI~s~eDA~~a~~~G~dgI~VSNHGGRqlD~ 253 (263)
...-.+-|+|||+.++ .|||+|.|.|.|+|+.+.++|||+|.|++||||+..+
T Consensus 124 -------------~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t 177 (326)
T PRK05458 124 -------------SDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCIT 177 (326)
T ss_pred -------------hHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCccccc
Confidence 0011234999999998 5666556999999999999999999999999988544
No 19
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=99.65 E-value=8.5e-16 Score=140.01 Aligned_cols=170 Identities=14% Similarity=0.081 Sum_probs=120.4
Q ss_pred hccccceecccc--ccccccccccccCCc-----ccccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCCCCccH
Q 039466 43 AFHGITFWPRIL--VDVCRIDISTSTLDY-----KISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSI 115 (263)
Q Consensus 43 af~~~~l~pr~L--~~v~~~d~st~~lG~-----~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~si 115 (263)
.|+++.|+|+-- ..-+++|++++|-.+ .+..||+-|.|- .-+|..+|.+-++.|...++-- .+++
T Consensus 9 ~f~DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMd------tv~~~~mA~~la~~g~~~~iHk--~~~~ 80 (343)
T TIGR01305 9 DFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMD------TVGTFEMAAALSQHSIFTAIHK--HYSV 80 (343)
T ss_pred CccceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCC------cccCHHHHHHHHHCCCeEEEee--CCCH
Confidence 599999999843 344789999998644 689999988763 2367789999999998888754 3466
Q ss_pred HHH----HHhccc------c-ccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCC
Q 039466 116 EEV----AASCNA------A-YKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVT 184 (263)
Q Consensus 116 eeV----~~~~~~------~-~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~ 184 (263)
|+- +...++ + ..-.+...+.++...++|...=+|.+|+.. |.
T Consensus 81 e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~Ah----------Gh----------------- 133 (343)
T TIGR01305 81 DEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVAN----------GY----------------- 133 (343)
T ss_pred HHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCC----------Cc-----------------
Confidence 652 222221 1 011112223344444554223334456532 11
Q ss_pred CCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEc-----CCCCCCCCCch-hh
Q 039466 185 SDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVS-----NHGARQLDYTP-AT 257 (263)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VS-----NHGGRqlD~~~-~~ 257 (263)
...--+.|+|||+.|+.+.|+|| |.++|+|+.++++|||+|.|| ||++||+++++ +.
T Consensus 134 ----------------s~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pq 197 (343)
T TIGR01305 134 ----------------SEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQ 197 (343)
T ss_pred ----------------HHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCH
Confidence 11123689999999999999999 999999999999999999999 99999999999 89
Q ss_pred hccccC
Q 039466 258 ISALEE 263 (263)
Q Consensus 258 i~~Lpe 263 (263)
+++|++
T Consensus 198 ltAv~~ 203 (343)
T TIGR01305 198 LSAVIE 203 (343)
T ss_pred HHHHHH
Confidence 988874
No 20
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.38 E-value=6e-12 Score=117.65 Aligned_cols=182 Identities=14% Similarity=0.149 Sum_probs=120.5
Q ss_pred hccccceecccccc--ccccccccccCCcccccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCCC----CccHH
Q 039466 43 AFHGITFWPRILVD--VCRIDISTSTLDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTS----SCSIE 116 (263)
Q Consensus 43 af~~~~l~pr~L~~--v~~~d~st~~lG~~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s----~~sie 116 (263)
.|+++.|+|. ++. .+++|+++.+-+..+..||+++||+.- .+..+|.+.+++|-.-++...+ ..+.+
T Consensus 17 ~fddV~lvp~-~~~~~~~dvdls~~~~~~~i~~Piv~a~M~gV------t~~~la~avs~~GglGvl~~~gl~~~~~~~e 89 (368)
T PRK08649 17 GLDEIAIVPS-RRTRDPEDVSTSWQIDAYRFEIPIIASPMDAV------VSPETAIELGKLGGLGVLNLEGLWTRYEDPE 89 (368)
T ss_pred CcceEEEeCC-CCCCCHHHceeeeeecceeccCcEeccCCccc------CCHHHHHHHHhCCCceEEeeccccccCCCHH
Confidence 5999999999 775 478999998999999999999999652 4557899999999766666321 23455
Q ss_pred HHHHhc----c-----------ccccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhcccc
Q 039466 117 EVAASC----N-----------AAYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLST 181 (263)
Q Consensus 117 eV~~~~----~-----------~~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~ 181 (263)
++.+.- + .-+.|+++..++++..++++ +.|++.... ....++- +.+.. .
T Consensus 90 ~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~~~iv~~~~~~~---V~v~vr~~~--~~~~e~a--------~~l~e---a 153 (368)
T PRK08649 90 PILDEIASLGKDEATRLMQELYAEPIKPELITERIAEIRDAG---VIVAVSLSP--QRAQELA--------PTVVE---A 153 (368)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCe---EEEEEecCC--cCHHHHH--------HHHHH---C
Confidence 544321 1 02347888889999888875 334443210 0010110 01100 0
Q ss_pred CCCCCCCccHHHHHHHhcCCCC-CHHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEEcCCCCC
Q 039466 182 KVTSDTGSNLEAYAKETMDPSL-SWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNHGAR 249 (263)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~-~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~VSNHGGR 249 (263)
..+ ...-++++.++.+..+- +|.++.++++..++|||..+|.|+++|+.+.+.|||+|+|+.++|+
T Consensus 154 Gvd--~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs 220 (368)
T PRK08649 154 GVD--LFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGA 220 (368)
T ss_pred CCC--EEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCc
Confidence 000 00011223333333333 7999999999899999997899999999999999999999977774
No 21
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.23 E-value=1.4e-10 Score=108.40 Aligned_cols=186 Identities=14% Similarity=0.136 Sum_probs=121.6
Q ss_pred hccccceeccc-cccccccccccccCCcccccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCCC----CccHH-
Q 039466 43 AFHGITFWPRI-LVDVCRIDISTSTLDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTS----SCSIE- 116 (263)
Q Consensus 43 af~~~~l~pr~-L~~v~~~d~st~~lG~~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s----~~sie- 116 (263)
.||+|.|+|.. =++.+++||+..+=+.++..||+.|||++- .+..++..+.++|-+-++|..+ ....+
T Consensus 14 ~~d~i~~vp~~~t~~~~~v~~~~~i~~~~l~~PivlAPMagV------td~~fr~~~~~~Galgvvsaegl~~~~~~~~~ 87 (369)
T TIGR01304 14 SLDDISVVPSRRTRSSKDVDTAWQIDAYRFELPFIAHPMDAL------VSPEFAIELGELGGLGVLNLEGLWGRHEDPDP 87 (369)
T ss_pred CcceEEEcCCCCCCChhhccceeEEcceecCCceeecCCCcc------cCHHHHHHHHHcCCcccccchHHHhcCCCHHH
Confidence 69999999974 446778888888877889999999999863 3457899999999866676411 11122
Q ss_pred ---HHHHh---------cc-----c-cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhc
Q 039466 117 ---EVAAS---------CN-----A-AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGL 178 (263)
Q Consensus 117 ---eV~~~---------~~-----~-~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~ 178 (263)
+|... .. + -..+++++.++++.+++++ ||+..........++- +.+..
T Consensus 88 ~~~QI~g~~~~~~~a~aa~~~~e~~~~~~~p~l~~~ii~~vr~a~-----VtvkiRl~~~~~~e~a--------~~l~e- 153 (369)
T TIGR01304 88 AIAKIAEAYEEGDQAAATRLLQELHAAPLKPELLGERIAEVRDSG-----VITAVRVSPQNAREIA--------PIVVK- 153 (369)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHcCCCccChHHHHHHHHHHHhcc-----eEEEEecCCcCHHHHH--------HHHHH-
Confidence 22221 00 0 2357888889999988876 4444322111111110 01100
Q ss_pred cccCCCCCCCccHHHHHHHhc-CCCCCHHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEEcCCCCCCCC
Q 039466 179 LSTKVTSDTGSNLEAYAKETM-DPSLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNHGARQLD 252 (263)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~-~~~~~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~VSNHGGRqlD 252 (263)
...+ ...-++++.++++ .+.-+|.+|.++++.+++|||+.+|.+.+||+++.+.|||+|+++.||+...+
T Consensus 154 --AGad--~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~ 224 (369)
T TIGR01304 154 --AGAD--LLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTR 224 (369)
T ss_pred --CCCC--EEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcccc
Confidence 0000 0011223344433 33457999999999999999998899999999999999999998888875443
No 22
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.10 E-value=1.7e-09 Score=102.06 Aligned_cols=194 Identities=15% Similarity=0.193 Sum_probs=104.5
Q ss_pred hccccceeccccc-cccccccccccC-CcccccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCCCCccHHHHHH
Q 039466 43 AFHGITFWPRILV-DVCRIDISTSTL-DYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAA 120 (263)
Q Consensus 43 af~~~~l~pr~L~-~v~~~d~st~~l-G~~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~ 120 (263)
-|+++.|+|..-. ..+++|++|.|. ...+..||+-|||... .+-.+|.+.+++|-.-+|+. ..++|++++
T Consensus 11 tfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~V------t~~~lA~AvA~aGGlGvI~~--~~~~e~l~~ 82 (404)
T PRK06843 11 TFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTV------TESQMAIAIAKEGGIGIIHK--NMSIEAQRK 82 (404)
T ss_pred CccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCC------CCHHHHHHHHHCCCEEEecC--CCCHHHHHH
Confidence 4999999998643 346789988875 4567899999999752 24578888888887667763 467776543
Q ss_pred hcc--------c-cccCHHHH---HHH------HHHHHHcCCCEEEEccCCCCCcchHHHHhhhhh----h---h-hhhh
Q 039466 121 SCN--------A-AYKKRDMA---ATL------VQRAERNGFMALVLTADTPRLDRREADIKNKMI----A---Q-QLKN 174 (263)
Q Consensus 121 ~~~--------~-~~~d~~~~---~~l------i~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~----~---p-~~~~ 174 (263)
.-. . +..+++.. .++ ++..+. ++-+...-+- .++.+|.+.++. . | +++.
T Consensus 83 eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~~~~~~~--~~d~~~~~~~---~~a~~d~~~~l~v~aavg~~~~~~~~ 157 (404)
T PRK06843 83 EIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDA--YKNAEHKEDF---PNACKDLNNKLRVGAAVSIDIDTIER 157 (404)
T ss_pred HHHHHHhhcCCCceeecccccccchhheeccccchHHHH--Hhhhhhhhhc---chhhhhhhcCeEEEEEEeCCHHHHHH
Confidence 210 0 11111000 000 000000 0000000000 111111111100 0 0 0000
Q ss_pred hhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCCEEEEcC-----CCC
Q 039466 175 LEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSIT-NLPILIKGVLTREDAIKAVEVGVAGIIVSN-----HGA 248 (263)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~-~lPiilKGI~s~eDA~~a~~~G~dgI~VSN-----HGG 248 (263)
...+-....+ -+. .-....++..-++.++|||+.+ +++||+++|.|.++|+.+.++|+|+|.|+. |++
T Consensus 158 v~~lv~aGvD-----vI~-iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~t 231 (404)
T PRK06843 158 VEELVKAHVD-----ILV-IDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTT 231 (404)
T ss_pred HHHHHhcCCC-----EEE-EECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcc
Confidence 0000000000 000 0000112222356799999998 699999999999999999999999999985 778
Q ss_pred CCCCCch
Q 039466 249 RQLDYTP 255 (263)
Q Consensus 249 RqlD~~~ 255 (263)
|++++..
T Consensus 232 r~~~g~g 238 (404)
T PRK06843 232 RIVAGVG 238 (404)
T ss_pred eeecCCC
Confidence 9999863
No 23
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.07 E-value=2.2e-09 Score=99.11 Aligned_cols=148 Identities=19% Similarity=0.240 Sum_probs=101.8
Q ss_pred hccccceeccccc-cccccccccccCC-cccccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCCCCccHHHHHH
Q 039466 43 AFHGITFWPRILV-DVCRIDISTSTLD-YKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAA 120 (263)
Q Consensus 43 af~~~~l~pr~L~-~v~~~d~st~~lG-~~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~ 120 (263)
.|+++.|+|.... +.+++|++|.|.+ ..+..||+.|||... .|..+|.+.+++|-.-++... .++++..+
T Consensus 3 ~~ddv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~v------t~~~ma~ava~~GglGvi~~~--~~~~~~~~ 74 (325)
T cd00381 3 TFDDVLLVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTV------TESEMAIAMARLGGIGVIHRN--MSIEEQAE 74 (325)
T ss_pred CcccEEEeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcC------CcHHHHHHHHHCCCEEEEeCC--CCHHHHHH
Confidence 4899999998744 4688999999998 889999999999753 345677777787765555533 45555432
Q ss_pred hc----cc------cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCcc
Q 039466 121 SC----NA------AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSN 190 (263)
Q Consensus 121 ~~----~~------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~ 190 (263)
.. .. +..+ ....+.++.+.++|++.|+|+.- . |
T Consensus 75 ~i~~vk~~l~v~~~~~~~-~~~~~~~~~l~eagv~~I~vd~~--~-G--------------------------------- 117 (325)
T cd00381 75 EVRKVKGRLLVGAAVGTR-EDDKERAEALVEAGVDVIVIDSA--H-G--------------------------------- 117 (325)
T ss_pred HHHHhccCceEEEecCCC-hhHHHHHHHHHhcCCCEEEEECC--C-C---------------------------------
Confidence 21 11 1122 22344555555677776664431 1 0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCCEEEEc
Q 039466 191 LEAYAKETMDPSLSWKDIEWLRSITN-LPILIKGVLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 191 ~~~~~~~~~~~~~~W~dl~~lr~~~~-lPiilKGI~s~eDA~~a~~~G~dgI~VS 244 (263)
++..-++.+++|++..+ +||++..|.++++|+.+.++|||+|+|+
T Consensus 118 ---------~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 118 ---------HSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred ---------CcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEEC
Confidence 01112356899999875 8999977999999999999999999994
No 24
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.06 E-value=2.1e-09 Score=101.55 Aligned_cols=168 Identities=17% Similarity=0.065 Sum_probs=96.6
Q ss_pred cccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCCCCccHHHHHHhcc-------ccc-cCHHHHHHHHHHHHHc
Q 039466 71 ISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCN-------AAY-KKRDMAATLVQRAERN 142 (263)
Q Consensus 71 ~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~-------~~~-~d~~~~~~li~ra~~a 142 (263)
+..||+++||++..+. ++.-.++|.||+.+|....++... .+.+++..... +.+ -+.+ .++.
T Consensus 76 i~~Pi~~~~Ms~Gs~s-~~a~~aLa~aa~~aG~~~~~Gegg-~~~~~~~~~~~~i~q~~~~~fGv~~~----~~~~---- 145 (392)
T cd02808 76 LDSPFNISAMSFGALS-KEAKEALAIGAALAGTASNTGEGG-ELPEEREGGGDIIKQVASGRFGVRPE----YLNK---- 145 (392)
T ss_pred cccceEecCCCCCccc-HHHHHHHHHHHHhcCCceeecCCC-CCHHHHhhhhheEEEecCCCCccCHH----Hccc----
Confidence 4799999999977653 567779999999999988887644 55665542211 011 1111 1111
Q ss_pred CCCEEEEccCC---CCCcchHHHHhhhhhhhhhhhhhhc-cccCCCCCCCccHHHHHHHhcCCCCC-----HHHHHHHHh
Q 039466 143 GFMALVLTADT---PRLDRREADIKNKMIAQQLKNLEGL-LSTKVTSDTGSNLEAYAKETMDPSLS-----WKDIEWLRS 213 (263)
Q Consensus 143 G~~al~vTvD~---~~~g~R~~d~r~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----W~dl~~lr~ 213 (263)
++++-+-+.- |..|- .+|.-+.-..+ ....+ ...++.+++..++.+. .+.|+|||+
T Consensus 146 -~~~ieik~~QGAkpg~gg---------~l~~~Kv~~eiA~~r~~-----~~g~~~isp~~~~~~~~~~~l~~~I~~lr~ 210 (392)
T cd02808 146 -ADAIEIKIGQGAKPGEGG---------HLPGEKVTEEIAKIRGI-----PPGVDLISPPPHHDIYSIEDLAQLIEDLRE 210 (392)
T ss_pred -CcEEEEEeccCCCCCCCC---------ccccccCCHHHHHHhCC-----CCCccccCCCCCCCCCCHHHHHHHHHHHHH
Confidence 1222211110 00000 01100000000 00000 0112333444444543 346999999
Q ss_pred hcC-CCEEEEecC--CHHHHHHHHHcC-CCEEEEcCCCCCC--------CCCchhhhccccC
Q 039466 214 ITN-LPILIKGVL--TREDAIKAVEVG-VAGIIVSNHGARQ--------LDYTPATISALEE 263 (263)
Q Consensus 214 ~~~-lPiilKGI~--s~eDA~~a~~~G-~dgI~VSNHGGRq--------lD~~~~~i~~Lpe 263 (263)
.++ .||++|++. +++|+.++++.| +|+|+||||||++ .|..++++..|++
T Consensus 211 ~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~ 272 (392)
T cd02808 211 ATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLAR 272 (392)
T ss_pred hCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHH
Confidence 999 999999986 588999999876 9999999998876 4556777777753
No 25
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=1e-09 Score=101.11 Aligned_cols=147 Identities=18% Similarity=0.277 Sum_probs=113.7
Q ss_pred CChhHHHHHHHHHHCCCceeecCCCCccHHHHHHhccc--cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHh
Q 039466 87 NPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNA--AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIK 164 (263)
Q Consensus 87 ~~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~--~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r 164 (263)
.|+...+.|+.+.+.| .-++.-+..||..+|.+.+.| +++|+++..++++...++.- -+.|||.. ..||.+.| .
T Consensus 77 dp~~l~eaA~~~~~~g-~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~-~iPVTVKi-RlG~d~~~-~ 152 (323)
T COG0042 77 DPELLAEAAKIAEELG-ADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG-DIPVTVKI-RLGWDDDD-I 152 (323)
T ss_pred CHHHHHHHHHHHHhcC-CCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC-CCCeEEEE-ecccCccc-c
Confidence 3666678999999999 788999999999999988776 99999999999999887653 68999997 45887766 1
Q ss_pred hhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcC-CCEEEEe-cCCHHHHHHHHH-cCCCEE
Q 039466 165 NKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITN-LPILIKG-VLTREDAIKAVE-VGVAGI 241 (263)
Q Consensus 165 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~-lPiilKG-I~s~eDA~~a~~-~G~dgI 241 (263)
+...+. +.+.. ... ....-|+++..+.+.++.+|+.|+.+++..+ +|||..| |.|++||+..++ .|||||
T Consensus 153 ~~~~ia--~~~~~---~g~--~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgV 225 (323)
T COG0042 153 LALEIA--RILED---AGA--DALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGV 225 (323)
T ss_pred cHHHHH--HHHHh---cCC--CEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEE
Confidence 111111 11110 000 0112356777777788899999999999999 9999999 999999999999 589999
Q ss_pred EEc
Q 039466 242 IVS 244 (263)
Q Consensus 242 ~VS 244 (263)
+|.
T Consensus 226 Mig 228 (323)
T COG0042 226 MIG 228 (323)
T ss_pred EEc
Confidence 984
No 26
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.72 E-value=3.4e-08 Score=96.00 Aligned_cols=59 Identities=24% Similarity=0.298 Sum_probs=54.8
Q ss_pred HHHHHHHHhhcCCCEEEEe--cCCHHHHHHHHHcCCCEEEEcCCCC-----C-CCCCchhhhccccC
Q 039466 205 WKDIEWLRSITNLPILIKG--VLTREDAIKAVEVGVAGIIVSNHGA-----R-QLDYTPATISALEE 263 (263)
Q Consensus 205 W~dl~~lr~~~~lPiilKG--I~s~eDA~~a~~~G~dgI~VSNHGG-----R-qlD~~~~~i~~Lpe 263 (263)
-+.|+|||+.|+.++.|++ |.++|+|+.++++|||+|.|||||| | |++.+++.+.++++
T Consensus 271 ~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~ 337 (502)
T PRK07107 271 KRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIE 337 (502)
T ss_pred HHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHH
Confidence 3679999999998899999 9999999999999999999999999 9 99999999988764
No 27
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.52 E-value=2.7e-07 Score=89.85 Aligned_cols=51 Identities=20% Similarity=0.232 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCCEEEEcCCCC----CCCC
Q 039466 202 SLSWKDIEWLRSITN-LPILIKGVLTREDAIKAVEVGVAGIIVSNHGA----RQLD 252 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~-lPiilKGI~s~eDA~~a~~~G~dgI~VSNHGG----RqlD 252 (263)
...|+.++|||+.|+ ++||.++|.|+|+|+.|.++|||+|.||+|.| ++..
T Consensus 274 ~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~ 329 (505)
T PLN02274 274 IYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEV 329 (505)
T ss_pred HHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccc
Confidence 346999999999995 88889999999999999999999999999988 6554
No 28
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=98.43 E-value=9.9e-08 Score=87.51 Aligned_cols=138 Identities=17% Similarity=0.297 Sum_probs=84.9
Q ss_pred HHHHHHHHCCCceeecCCCCccHHHHHHhccc--cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcch--HHHHhhhhh
Q 039466 93 ATARAAASCNTIMVLSFTSSCSIEEVAASCNA--AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRR--EADIKNKMI 168 (263)
Q Consensus 93 a~AraA~~~gi~~~lss~s~~sieeV~~~~~~--~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R--~~d~r~~~~ 168 (263)
..|+.+.+.| .-.+.-+..||...|.+.+.| +++|++...++++.+.++- .+.|||... .|+. ..+...
T Consensus 70 ~aa~~~~~~~-~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~--~~pvsvKiR-~g~~~~~~~~~~--- 142 (309)
T PF01207_consen 70 EAAEIVAELG-FDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAV--PIPVSVKIR-LGWDDSPEETIE--- 142 (309)
T ss_dssp HHHHHHCCTT--SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH---SSEEEEEEE-SECT--CHHHHH---
T ss_pred HHHHhhhccC-CcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhccc--ccceEEecc-cccccchhHHHH---
Confidence 4455555545 366788889999999988766 9999999999999987643 278888874 3665 211211
Q ss_pred hhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHc-CCCEEEEc
Q 039466 169 AQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEV-GVAGIIVS 244 (263)
Q Consensus 169 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~-G~dgI~VS 244 (263)
+ .+.+... ..+ ...-|+++..+.+.+..+|+.|+++++..++|||..| |.|++||.+..+. |||||+++
T Consensus 143 ~--~~~l~~~---G~~--~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 143 F--ARILEDA---GVS--AITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIG 213 (309)
T ss_dssp H--HHHHHHT---T----EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEES
T ss_pred H--HHHhhhc---ccc--eEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEc
Confidence 1 0111100 000 0011334445566678899999999999999999999 9999999999986 99999984
No 29
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=98.39 E-value=5.8e-06 Score=75.25 Aligned_cols=52 Identities=27% Similarity=0.374 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHhhcCCCEEEEecCCHHH----HHHHHHcCCCEEEEcCC-CCCCCC
Q 039466 201 PSLSWKDIEWLRSITNLPILIKGVLTRED----AIKAVEVGVAGIIVSNH-GARQLD 252 (263)
Q Consensus 201 ~~~~W~dl~~lr~~~~lPiilKGI~s~eD----A~~a~~~G~dgI~VSNH-GGRqlD 252 (263)
+.+.++-++++|+.+++||.+|--.+.+| |+.+.++|+|+|.|+|+ .|+..|
T Consensus 142 ~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~ 198 (300)
T TIGR01037 142 PELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKID 198 (300)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccccc
Confidence 33457789999999999999996444444 66777899999999985 455444
No 30
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=7.4e-06 Score=75.51 Aligned_cols=155 Identities=16% Similarity=0.281 Sum_probs=101.4
Q ss_pred ccccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCCCCccHHHHHHhcc-c--cccCHHHHHHHHHHHH-HcCCC
Q 039466 70 KISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCN-A--AYKKRDMAATLVQRAE-RNGFM 145 (263)
Q Consensus 70 ~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~-~--~~~d~~~~~~li~ra~-~aG~~ 145 (263)
+-+.|+++ =++++ .|+--+..|+-++... -.+.-+-.|| ..++.+.. | ++.+++++.++|++.. ..+..
T Consensus 71 ~~D~PLIv-Qf~~n---dp~~ll~Aa~lv~~y~--D~idlNcGCP-q~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~p 143 (358)
T KOG2335|consen 71 PEDRPLIV-QFGGN---DPENLLKAARLVQPYC--DGIDLNCGCP-QKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVP 143 (358)
T ss_pred CCCCceEE-EEcCC---CHHHHHHHHHHhhhhc--CcccccCCCC-HHHHhcCCccceeccCHHHHHHHHHHHHhhcCCC
Confidence 66678776 23332 3555557777777765 4566677898 55655543 4 7889999999998875 34443
Q ss_pred EEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhc--CCCCCHHHHHHHHhhcC-CCEEEE
Q 039466 146 ALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETM--DPSLSWKDIEWLRSITN-LPILIK 222 (263)
Q Consensus 146 al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~W~dl~~lr~~~~-lPiilK 222 (263)
||+...+....++-+. .. +.+.. ...+ --.-++++..+.. .+.++|+.|+.||+..+ +|||+.
T Consensus 144 ---Vs~KIRI~~d~~kTvd----~a--k~~e~---aG~~--~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaN 209 (358)
T KOG2335|consen 144 ---VSVKIRIFVDLEKTVD----YA--KMLED---AGVS--LLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIAN 209 (358)
T ss_pred ---eEEEEEecCcHHHHHH----HH--HHHHh---CCCc--EEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEee
Confidence 7777766544333222 11 11110 0000 0012233333332 57889999999999999 999999
Q ss_pred e-cCCHHHHHHHHH-cCCCEEEEcC
Q 039466 223 G-VLTREDAIKAVE-VGVAGIIVSN 245 (263)
Q Consensus 223 G-I~s~eDA~~a~~-~G~dgI~VSN 245 (263)
| |++.+|+.++.+ .|+|||++..
T Consensus 210 GnI~~~~d~~~~~~~tG~dGVM~ar 234 (358)
T KOG2335|consen 210 GNILSLEDVERCLKYTGADGVMSAR 234 (358)
T ss_pred CCcCcHHHHHHHHHHhCCceEEecc
Confidence 9 999999999999 8999999753
No 31
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.33 E-value=1.4e-06 Score=84.75 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=51.6
Q ss_pred HHHHHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCCEEEE-----cCCCCCCCCCc-hhhhcccc
Q 039466 205 WKDIEWLRSIT-NLPILIKGVLTREDAIKAVEVGVAGIIV-----SNHGARQLDYT-PATISALE 262 (263)
Q Consensus 205 W~dl~~lr~~~-~lPiilKGI~s~eDA~~a~~~G~dgI~V-----SNHGGRqlD~~-~~~i~~Lp 262 (263)
++.+++|++++ ++|||+++|.|.|+|+.+.++|+|+|.| |+|++|++++. ++++++|+
T Consensus 257 l~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~ 321 (486)
T PRK05567 257 LDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIA 321 (486)
T ss_pred HHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHH
Confidence 46799999998 8999999999999999999999999999 89999999987 45566553
No 32
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=98.30 E-value=4.2e-06 Score=76.96 Aligned_cols=146 Identities=12% Similarity=0.184 Sum_probs=98.0
Q ss_pred ChhHHHHHHHHHHCCCceeecCCCCccHHHHHHhccc--cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhh
Q 039466 88 PEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNA--AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKN 165 (263)
Q Consensus 88 ~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~--~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~ 165 (263)
|+.-...|+-+.+.| .-.+.-+..||...|.+.+.| +++|++...++++.+.++--..+.|||.... |+...+.-
T Consensus 74 p~~~~~aA~~~~~~g-~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~-g~~~~~~~- 150 (312)
T PRK10550 74 PQWLAENAARAVELG-SWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRL-GWDSGERK- 150 (312)
T ss_pred HHHHHHHHHHHHHcC-CCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEEC-CCCCchHH-
Confidence 444446677778888 567888999999999877655 8999999999999987642124788888754 55322211
Q ss_pred hhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCC-CCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHH-cCCCEEE
Q 039466 166 KMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDP-SLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVE-VGVAGII 242 (263)
Q Consensus 166 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~-~G~dgI~ 242 (263)
..+. +.+.. ..++. ..-++++..+.+.+ ..+|+.++.+++..++|||..| |.|++||+.+++ .|||+|+
T Consensus 151 -~~~a--~~l~~---~Gvd~--i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVm 222 (312)
T PRK10550 151 -FEIA--DAVQQ---AGATE--LVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVM 222 (312)
T ss_pred -HHHH--HHHHh---cCCCE--EEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEE
Confidence 1111 11110 00000 00011222223344 3599999999999999999999 999999999996 7999999
Q ss_pred Ec
Q 039466 243 VS 244 (263)
Q Consensus 243 VS 244 (263)
|+
T Consensus 223 iG 224 (312)
T PRK10550 223 IG 224 (312)
T ss_pred Ec
Confidence 85
No 33
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=98.29 E-value=9e-06 Score=75.02 Aligned_cols=145 Identities=10% Similarity=0.168 Sum_probs=93.4
Q ss_pred ChhHHHHHHHHHHCCCceeecCCCCccHHHHHHhccc--cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhh
Q 039466 88 PEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNA--AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKN 165 (263)
Q Consensus 88 ~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~--~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~ 165 (263)
|+.-...|+.+.+.| .-++.-+.+||...|.+.+.| +++|++...++++.+.++= .+.|++... .||.+... +
T Consensus 76 ~~~~~~aa~~~~~~g-~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~--d~pv~vKiR-~G~~~~~~-~ 150 (321)
T PRK10415 76 PKEMADAARINVESG-AQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV--DVPVTLKIR-TGWAPEHR-N 150 (321)
T ss_pred HHHHHHHHHHHHHCC-CCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc--CCceEEEEE-ccccCCcc-h
Confidence 344346666666676 457888999999988877655 8999999999999886541 223555432 34433110 0
Q ss_pred hhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHH-cCCCEEEE
Q 039466 166 KMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVE-VGVAGIIV 243 (263)
Q Consensus 166 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~-~G~dgI~V 243 (263)
...+. +.+... .++. ..-+++...+.+.+..+|+.++.+++.+++|||..| |.|++||+++++ .|||||++
T Consensus 151 ~~~~a--~~le~~---G~d~--i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 151 CVEIA--QLAEDC---GIQA--LTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred HHHHH--HHHHHh---CCCE--EEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEE
Confidence 00111 111100 0000 001122222334556789999999999999999999 999999999998 69999998
Q ss_pred c
Q 039466 244 S 244 (263)
Q Consensus 244 S 244 (263)
+
T Consensus 224 G 224 (321)
T PRK10415 224 G 224 (321)
T ss_pred C
Confidence 6
No 34
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=98.26 E-value=1.8e-05 Score=72.16 Aligned_cols=43 Identities=28% Similarity=0.371 Sum_probs=34.6
Q ss_pred HHHHHHHhhcCCCEEEEecCC----HHHHHHHHHcCCCEEEEcCCCC
Q 039466 206 KDIEWLRSITNLPILIKGVLT----REDAIKAVEVGVAGIIVSNHGA 248 (263)
Q Consensus 206 ~dl~~lr~~~~lPiilKGI~s----~eDA~~a~~~G~dgI~VSNHGG 248 (263)
+-++++++.+++||++|=-.. .+.|+.+.++|+|||+++|+-.
T Consensus 158 ~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~ 204 (299)
T cd02940 158 EICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVN 204 (299)
T ss_pred HHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEecccc
Confidence 457889999999999994222 2678888899999999999763
No 35
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=98.26 E-value=4.2e-06 Score=73.73 Aligned_cols=206 Identities=12% Similarity=0.008 Sum_probs=117.4
Q ss_pred HHHhCCccccccccCCccchHHHHHHHHhcc--ccceeccccccccccccccccCCcccccceeecccCCcccCCChhHH
Q 039466 15 ARLALPKMYYDFYAGGVENQYTLKENMEAFH--GITFWPRILVDVCRIDISTSTLDYKISASIIIAPTGLHKLANPEGEV 92 (263)
Q Consensus 15 A~~~l~~~~~~y~~~ga~~e~t~~~N~~af~--~~~l~pr~L~~v~~~d~st~~lG~~~~~Pi~iaP~~~~~l~~~~ge~ 92 (263)
|++.-|-+.-.++-|=+-|..|...-+.--+ |=.|.++.=-...-++....-+ +-..|++++= ++. .|+.-+
T Consensus 10 ~~~~~~~~~~~~lgg~~~d~~t~~a~~~~~~rgr~ef~~~~e~~~~~i~~e~~~~--~~~~~vivnv-~~~---~~ee~~ 83 (231)
T TIGR00736 10 CRKFKDLFAIVTLGGYNADRATYKASRDIEKRGRKEFSFNLEEFNSYIIEQIKKA--ESRALVSVNV-RFV---DLEEAY 83 (231)
T ss_pred HHhcCcCcCEEEECCccCCHHHHHHHHHHHHcCCcccCcCcccHHHHHHHHHHHH--hhcCCEEEEE-ecC---CHHHHH
Confidence 3443333332333344567778777665433 2223322100011122222222 1233655532 221 244444
Q ss_pred HHHHHHHHCCCceeecCCCCccHHHHHHhccc--cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhh
Q 039466 93 ATARAAASCNTIMVLSFTSSCSIEEVAASCNA--AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQ 170 (263)
Q Consensus 93 a~AraA~~~gi~~~lss~s~~sieeV~~~~~~--~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p 170 (263)
.+|+-+++ + .-++.-+.+||..++.+.+.| +++|++...++++.+++. .+.|+|......... +.. .+.
T Consensus 84 ~~a~~v~~-~-~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~---~~PVsvKiR~~~~~~-~~~---~~a 154 (231)
T TIGR00736 84 DVLLTIAE-H-ADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL---NKPIFVKIRGNCIPL-DEL---IDA 154 (231)
T ss_pred HHHHHHhc-C-CCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC---CCcEEEEeCCCCCcc-hHH---HHH
Confidence 66666655 2 456777889999999988766 899999999999998854 357888875432111 110 010
Q ss_pred hhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcC-CCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 171 QLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITN-LPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~-lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
+.+.......+. -.+.+ ...+..+|+.|+.+++..+ +|||..| |.|+|||++.+++|||+|+|+-
T Consensus 155 --~~l~~aGad~i~-----Vd~~~---~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR 221 (231)
T TIGR00736 155 --LNLVDDGFDGIH-----VDAMY---PGKPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVAR 221 (231)
T ss_pred --HHHHHcCCCEEE-----EeeCC---CCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEcH
Confidence 111100000000 00000 0112268999999999985 9999999 9999999999999999999864
No 36
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=98.24 E-value=3.7e-05 Score=71.03 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=35.5
Q ss_pred HHHHHHHHhhcCCCEEEEecC----CHHHHHHHHHcCCCEEEEcCCC
Q 039466 205 WKDIEWLRSITNLPILIKGVL----TREDAIKAVEVGVAGIIVSNHG 247 (263)
Q Consensus 205 W~dl~~lr~~~~lPiilKGI~----s~eDA~~a~~~G~dgI~VSNHG 247 (263)
++-++++++.+++||++|=-. ..+-|+.+.++|+|||+++|+.
T Consensus 152 ~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt~ 198 (325)
T cd04739 152 LDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFNRF 198 (325)
T ss_pred HHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEcCc
Confidence 467899999999999999432 2456777888999999999985
No 37
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=98.23 E-value=1.7e-05 Score=72.35 Aligned_cols=45 Identities=24% Similarity=0.479 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHhhcCCCEEEEecCCHHH----HHHHHHcCCCEEEEcC
Q 039466 201 PSLSWKDIEWLRSITNLPILIKGVLTRED----AIKAVEVGVAGIIVSN 245 (263)
Q Consensus 201 ~~~~W~dl~~lr~~~~lPiilKGI~s~eD----A~~a~~~G~dgI~VSN 245 (263)
+.+.++-++++|+.++.||.+|--.+.+| |+.+.++|+|+|+++|
T Consensus 142 ~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~n 190 (301)
T PRK07259 142 PELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLIN 190 (301)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEc
Confidence 34567889999999999999996545444 6777789999999987
No 38
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=98.12 E-value=2.4e-05 Score=72.80 Aligned_cols=151 Identities=19% Similarity=0.216 Sum_probs=94.2
Q ss_pred hccccceeccc---ccccccccccccc-CCcccccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCCCCccHHH-
Q 039466 43 AFHGITFWPRI---LVDVCRIDISTST-LDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEE- 117 (263)
Q Consensus 43 af~~~~l~pr~---L~~v~~~d~st~~-lG~~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~siee- 117 (263)
.|+++.|+|.. ++...++|+++.+ =+.++..||+-|||-- -.|..+|.+-++.|-..++--+ +++|+
T Consensus 4 tfdDVllvP~~s~v~~s~~dv~~~~~~~~~~~l~iPivsa~MDt------Vte~~mAiama~~Gglgvih~~--~~~e~q 75 (352)
T PF00478_consen 4 TFDDVLLVPGRSTVLPSRSDVSLSTKLTRNITLKIPIVSAPMDT------VTESEMAIAMARLGGLGVIHRN--MSIEEQ 75 (352)
T ss_dssp -GGGEEEE--SBSSTGGGGG-BEEEESSTSEEESSSEEE-SSTT------TSSHHHHHHHHHTTSEEEEESS--SCHHHH
T ss_pred ccccEEEecCCCCCCCCHhheECcccccCCEeecCceEecCccc------cchHHHHHHHHHhcCCceecCC--CCHHHH
Confidence 49999999998 4455666666555 5789999999999843 2456788887888877777554 55553
Q ss_pred ------HHHhccc--------------c-ccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhh
Q 039466 118 ------VAASCNA--------------A-YKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLE 176 (263)
Q Consensus 118 ------V~~~~~~--------------~-~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~ 176 (263)
|.+..+. + ..+ ...+.++...++|++.|+| |+.. |.-
T Consensus 76 ~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~--~~~er~~~L~~agvD~ivI--D~a~-g~s----------------- 133 (352)
T PF00478_consen 76 AEEVKKVKRYYPNASKDEKGRLLVAAAVGTRD--DDFERAEALVEAGVDVIVI--DSAH-GHS----------------- 133 (352)
T ss_dssp HHHHHHHHTHHTTHHBHTTSCBCEEEEEESST--CHHHHHHHHHHTT-SEEEE--E-SS-TTS-----------------
T ss_pred HHHHhhhccccccccccccccceEEEEecCCH--HHHHHHHHHHHcCCCEEEc--cccC-ccH-----------------
Confidence 2222111 1 111 1123344444589888775 4332 110
Q ss_pred hccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCCEEEEcCCCC
Q 039466 177 GLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITN-LPILIKGVLTREDAIKAVEVGVAGIIVSNHGA 248 (263)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~-lPiilKGI~s~eDA~~a~~~G~dgI~VSNHGG 248 (263)
+.. -+.+++||+..+ +|||.=.|-|.|-|+.+.++|||+|-|.==+|
T Consensus 134 ----------------~~~---------~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpG 181 (352)
T PF00478_consen 134 ----------------EHV---------IDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPG 181 (352)
T ss_dssp ----------------HHH---------HHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSS
T ss_pred ----------------HHH---------HHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCC
Confidence 111 146889999987 99999889999999999999999999875444
No 39
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.09 E-value=5.5e-06 Score=73.01 Aligned_cols=93 Identities=19% Similarity=0.303 Sum_probs=67.7
Q ss_pred HHHHHHHHHHc---CCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHH
Q 039466 132 AATLVQRAERN---GFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDI 208 (263)
Q Consensus 132 ~~~li~ra~~a---G~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl 208 (263)
..+.+++|+.. ||..+.++.|.++..+|-.++.-.+-+| + ++.++. ..+-.+++.|
T Consensus 109 ~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmP------------l--------g~pIGs-g~Gi~~~~~I 167 (248)
T cd04728 109 PIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMP------------L--------GSPIGS-GQGLLNPYNL 167 (248)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCC------------C--------CcCCCC-CCCCCCHHHH
Confidence 45667788777 9999999999888777665552111111 0 011111 1233478999
Q ss_pred HHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 209 EWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 209 ~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
+.|++..++|||+-| |.+++||.+|.+.|+||++|..
T Consensus 168 ~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~S 205 (248)
T cd04728 168 RIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (248)
T ss_pred HHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 999999999999999 9999999999999999999854
No 40
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.08 E-value=7e-05 Score=69.40 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=35.3
Q ss_pred CHHHHHHHHhhcCCCEEEEe---cCC-HHHHHHHHHcCCCEEEEcCCC
Q 039466 204 SWKDIEWLRSITNLPILIKG---VLT-REDAIKAVEVGVAGIIVSNHG 247 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKG---I~s-~eDA~~a~~~G~dgI~VSNHG 247 (263)
.|+-++++++.+++||++|- +.. .+-|+.+.++|+|||+++|..
T Consensus 153 ~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~ 200 (334)
T PRK07565 153 YLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRF 200 (334)
T ss_pred HHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECCc
Confidence 36789999999999999992 322 455566678999999999985
No 41
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=98.06 E-value=3.1e-05 Score=71.38 Aligned_cols=145 Identities=16% Similarity=0.166 Sum_probs=92.6
Q ss_pred ChhHHHHHHHHHHCCCceeecCCCCccHHHHHHhccc--cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHH-Hh
Q 039466 88 PEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNA--AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREAD-IK 164 (263)
Q Consensus 88 ~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~--~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d-~r 164 (263)
|+--...|+.+.+.| .-.+.-+..||...+.+.+.| +++|++++.++++.++++= .+.|||.... |+...+ ..
T Consensus 66 p~~~~~aA~~~~~~g-~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~--~~PVsvKiR~-g~~~~~~~~ 141 (318)
T TIGR00742 66 PNDLAKCAKIAEKRG-YDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAV--NIPVTVKHRI-GIDPLDSYE 141 (318)
T ss_pred HHHHHHHHHHHHhCC-CCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHh--CCCeEEEEec-CCCCcchHH
Confidence 444446777777777 456788889999998765444 8999999999999987642 3568888743 543221 11
Q ss_pred hhhhhhhhhhhhhccccCCCCCCCccHHHHH-HHhcC-------CCCCHHHHHHHHhhc-CCCEEEEe-cCCHHHHHHHH
Q 039466 165 NKMIAQQLKNLEGLLSTKVTSDTGSNLEAYA-KETMD-------PSLSWKDIEWLRSIT-NLPILIKG-VLTREDAIKAV 234 (263)
Q Consensus 165 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~W~dl~~lr~~~-~lPiilKG-I~s~eDA~~a~ 234 (263)
+-..+. +.+.. ...+ ...-++++. .+.+. +..+|+.+..+++.. ++|||..| |.|++||++++
T Consensus 142 ~~~~~~--~~l~~---~G~~--~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l 214 (318)
T TIGR00742 142 FLCDFV--EIVSG---KGCQ--NFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHL 214 (318)
T ss_pred HHHHHH--HHHHH---cCCC--EEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHH
Confidence 100110 11110 0000 000111221 11111 235899999999987 89999999 99999999999
Q ss_pred HcCCCEEEEc
Q 039466 235 EVGVAGIIVS 244 (263)
Q Consensus 235 ~~G~dgI~VS 244 (263)
+ |||||+|+
T Consensus 215 ~-g~dgVMig 223 (318)
T TIGR00742 215 S-HVDGVMVG 223 (318)
T ss_pred h-CCCEEEEC
Confidence 7 99999985
No 42
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.06 E-value=7.3e-06 Score=72.36 Aligned_cols=93 Identities=19% Similarity=0.292 Sum_probs=67.7
Q ss_pred HHHHHHHHHHc---CCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHH
Q 039466 132 AATLVQRAERN---GFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDI 208 (263)
Q Consensus 132 ~~~li~ra~~a---G~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl 208 (263)
..+.+++|+.. ||..+.++.|.++..+|-.++.-.+-+| + ++.++. ..+-.+++.|
T Consensus 109 ~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmP------------l--------g~pIGs-g~gi~~~~~i 167 (250)
T PRK00208 109 PIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMP------------L--------GAPIGS-GLGLLNPYNL 167 (250)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCC------------C--------CcCCCC-CCCCCCHHHH
Confidence 45667788777 9999999999888777665552111111 0 011111 1133468889
Q ss_pred HHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 209 EWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 209 ~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
+.+++..++|||+-| |.+++||.+|.+.|+||++|..
T Consensus 168 ~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~S 205 (250)
T PRK00208 168 RIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (250)
T ss_pred HHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 999999899999998 9999999999999999999864
No 43
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=98.05 E-value=3.2e-05 Score=68.25 Aligned_cols=147 Identities=14% Similarity=0.109 Sum_probs=95.7
Q ss_pred ccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCCCCccHHHHHHhccc--cccCHHHHHHHHHHHHHcCCCEEEE
Q 039466 72 SASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNA--AYKKRDMAATLVQRAERNGFMALVL 149 (263)
Q Consensus 72 ~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~--~~~d~~~~~~li~ra~~aG~~al~v 149 (263)
..|+++.=.|. +|+.-...|+.+++.+ ..+--+.+|+..+|.+.+.| +++|++.+.++++..++. .+.|
T Consensus 72 ~~p~~vqi~g~----~~~~~~~aa~~~~~~~--~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~---~~pV 142 (233)
T cd02911 72 NVLVGVNVRSS----SLEPLLNAAALVAKNA--AILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKET---GVPV 142 (233)
T ss_pred CCeEEEEecCC----CHHHHHHHHHHHhhcC--CEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhc---CCCE
Confidence 34666654432 2444457777776643 68888999999999887655 899999999999988875 3567
Q ss_pred ccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcC-CCCCHHHHHHHHhhcCCCEEEEe-cCCH
Q 039466 150 TADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMD-PSLSWKDIEWLRSITNLPILIKG-VLTR 227 (263)
Q Consensus 150 TvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~W~dl~~lr~~~~lPiilKG-I~s~ 227 (263)
+|.... |+- .+.. .+. +.+.......+. .. .... ...+|+.|+.++ .++|||..| |.++
T Consensus 143 svKir~-g~~-~~~~---~la--~~l~~aG~d~ih-------v~---~~~~g~~ad~~~I~~i~--~~ipVIgnGgI~s~ 203 (233)
T cd02911 143 SVKIRA-GVD-VDDE---ELA--RLIEKAGADIIH-------VD---AMDPGNHADLKKIRDIS--TELFIIGNNSVTTI 203 (233)
T ss_pred EEEEcC-CcC-cCHH---HHH--HHHHHhCCCEEE-------EC---cCCCCCCCcHHHHHHhc--CCCEEEEECCcCCH
Confidence 776543 331 1110 011 111100000000 00 0111 356899999887 789999999 9999
Q ss_pred HHHHHHHHcCCCEEEEcCC
Q 039466 228 EDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 228 eDA~~a~~~G~dgI~VSNH 246 (263)
+||+++++.|||+|+|.--
T Consensus 204 eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 204 ESAKEMFSYGADMVSVARA 222 (233)
T ss_pred HHHHHHHHcCCCEEEEcCC
Confidence 9999999999999999543
No 44
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.02 E-value=3.1e-05 Score=70.35 Aligned_cols=109 Identities=18% Similarity=0.234 Sum_probs=71.2
Q ss_pred HHHHHHHCCCceeecCCCCccHHHHHHhccccccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhh
Q 039466 94 TARAAASCNTIMVLSFTSSCSIEEVAASCNAAYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLK 173 (263)
Q Consensus 94 ~AraA~~~gi~~~lss~s~~sieeV~~~~~~~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~ 173 (263)
+.+...+.+.|.++|-... +.+...+..++++++|++++-|++-+|..-.|..++
T Consensus 81 ~~~~~~~~~~p~ivsi~g~---------------~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~---------- 135 (296)
T cd04740 81 LLPWLREFGTPVIASIAGS---------------TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAF---------- 135 (296)
T ss_pred HHHHhhcCCCcEEEEEecC---------------CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccc----------
Confidence 3333344677887765432 234455667888889999999998887632110000
Q ss_pred hhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEecC-----CHHHHHHHHHcCCCEEEEcCC-C
Q 039466 174 NLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVL-----TREDAIKAVEVGVAGIIVSNH-G 247 (263)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKGI~-----s~eDA~~a~~~G~dgI~VSNH-G 247 (263)
..++.+..+-++++|+.+++||.+| +- ..+-|+.+.++|+|+|+++|+ +
T Consensus 136 ------------------------~~~~~~~~eiv~~vr~~~~~Pv~vK-l~~~~~~~~~~a~~~~~~G~d~i~~~nt~~ 190 (296)
T cd04740 136 ------------------------GTDPEAVAEIVKAVKKATDVPVIVK-LTPNVTDIVEIARAAEEAGADGLTLINTLK 190 (296)
T ss_pred ------------------------cCCHHHHHHHHHHHHhccCCCEEEE-eCCCchhHHHHHHHHHHcCCCEEEEECCCc
Confidence 0123344567999999999999999 41 223477788899999999986 3
Q ss_pred CCCCC
Q 039466 248 ARQLD 252 (263)
Q Consensus 248 GRqlD 252 (263)
|+.+|
T Consensus 191 g~~~~ 195 (296)
T cd04740 191 GMAID 195 (296)
T ss_pred ccccc
Confidence 44443
No 45
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.01 E-value=0.00016 Score=64.60 Aligned_cols=141 Identities=15% Similarity=0.203 Sum_probs=84.8
Q ss_pred HHHHHHHHCCCceeecCCCCccHHHHHHhcc-c---------cccCHHHHHHHHHHHHHcCCCEEEEccCCCCC------
Q 039466 93 ATARAAASCNTIMVLSFTSSCSIEEVAASCN-A---------AYKKRDMAATLVQRAERNGFMALVLTADTPRL------ 156 (263)
Q Consensus 93 a~AraA~~~gi~~~lss~s~~sieeV~~~~~-~---------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~------ 156 (263)
.+.+.+++.++|+++|. ...+++++.+... + .+.+++...+++++. |-..+++++|....
T Consensus 65 ~i~~i~~~~~~pv~~gG-Gi~s~~d~~~l~~~G~~~vvigs~~~~~~~~~~~~~~~~---~~~~i~vsiD~k~g~~~~~~ 140 (258)
T PRK01033 65 LIENLASECFMPLCYGG-GIKTLEQAKKIFSLGVEKVSINTAALEDPDLITEAAERF---GSQSVVVSIDVKKNLGGKFD 140 (258)
T ss_pred HHHHHHHhCCCCEEECC-CCCCHHHHHHHHHCCCCEEEEChHHhcCHHHHHHHHHHh---CCCcEEEEEEEecCCCCcEE
Confidence 45666777889988876 4567888765321 1 567777776766654 44468999996421
Q ss_pred ----cchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHH
Q 039466 157 ----DRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTREDAI 231 (263)
Q Consensus 157 ----g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~ 231 (263)
||++..-..-..+ .+.+.......+- . +........ ..++|+-++.+++.+++|||.-| |.+.+|+.
T Consensus 141 v~~~gw~~~~~~~~~e~--~~~~~~~g~~~ii---~--~~i~~~G~~-~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~ 212 (258)
T PRK01033 141 VYTHNGTKKLKKDPLEL--AKEYEALGAGEIL---L--NSIDRDGTM-KGYDLELLKSFRNALKIPLIALGGAGSLDDIV 212 (258)
T ss_pred EEEcCCeecCCCCHHHH--HHHHHHcCCCEEE---E--EccCCCCCc-CCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHH
Confidence 2322110000000 0111100000000 0 000000111 23599999999999999999999 99999999
Q ss_pred HHH-HcCCCEEEEcC
Q 039466 232 KAV-EVGVAGIIVSN 245 (263)
Q Consensus 232 ~a~-~~G~dgI~VSN 245 (263)
.+. +.||+|+++++
T Consensus 213 ~l~~~~GvdgVivg~ 227 (258)
T PRK01033 213 EAILNLGADAAAAGS 227 (258)
T ss_pred HHHHHCCCCEEEEcc
Confidence 999 69999999875
No 46
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.97 E-value=2.3e-05 Score=75.46 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=41.7
Q ss_pred CHHHHHHHHhh-cCCCEEEEecCCHHHHHHHHHcCCCEEEEcCCCC
Q 039466 204 SWKDIEWLRSI-TNLPILIKGVLTREDAIKAVEVGVAGIIVSNHGA 248 (263)
Q Consensus 204 ~W~dl~~lr~~-~~lPiilKGI~s~eDA~~a~~~G~dgI~VSNHGG 248 (263)
-|+.|+|||+. +++||+++.|.|+++|+.++++|||+|.|++|.|
T Consensus 252 ~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G 297 (450)
T TIGR01302 252 VIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPG 297 (450)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCC
Confidence 45779999999 5899999999999999999999999999998877
No 47
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.97 E-value=8.6e-05 Score=68.31 Aligned_cols=144 Identities=14% Similarity=0.283 Sum_probs=87.8
Q ss_pred ChhHHHHHHHHHHCCCceeecCCCCccHHHHHHhccc--cccCHHHHHHHHHHHHH-cCCCEEEEccCCCCCcchHHHHh
Q 039466 88 PEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNA--AYKKRDMAATLVQRAER-NGFMALVLTADTPRLDRREADIK 164 (263)
Q Consensus 88 ~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~--~~~d~~~~~~li~ra~~-aG~~al~vTvD~~~~g~R~~d~r 164 (263)
|+.-...|+-++++|. -.+.-+.+||...+.....| +.++++...++++..++ .+ +.|+|.... |+-+.+.
T Consensus 74 ~~~~~~aa~~~~~~G~-d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~---~pv~vKir~-g~~~~~~- 147 (319)
T TIGR00737 74 PDTMAEAAKINEELGA-DIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVD---IPVTVKIRI-GWDDAHI- 147 (319)
T ss_pred HHHHHHHHHHHHhCCC-CEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcC---CCEEEEEEc-ccCCCcc-
Confidence 3444477777888873 45555667887666655544 67899999999998864 34 445555321 3321110
Q ss_pred hhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHH-HcCCCEEE
Q 039466 165 NKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTREDAIKAV-EVGVAGII 242 (263)
Q Consensus 165 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~-~~G~dgI~ 242 (263)
....+. +.+... ..+. ..-+++...+.+.+..+|+.++.+++..++|||.-| |.+++||.+++ +.|||+|+
T Consensus 148 ~~~~~a--~~l~~~---G~d~--i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vm 220 (319)
T TIGR00737 148 NAVEAA--RIAEDA---GAQA--VTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVM 220 (319)
T ss_pred hHHHHH--HHHHHh---CCCE--EEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEE
Confidence 000110 111100 0000 000111112223455689999999999999999999 99999999999 57999999
Q ss_pred Ec
Q 039466 243 VS 244 (263)
Q Consensus 243 VS 244 (263)
++
T Consensus 221 ig 222 (319)
T TIGR00737 221 IG 222 (319)
T ss_pred EC
Confidence 93
No 48
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=97.86 E-value=0.00026 Score=63.95 Aligned_cols=84 Identities=23% Similarity=0.341 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHH
Q 039466 128 KRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKD 207 (263)
Q Consensus 128 d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~d 207 (263)
+.+...+.+++++++|+++|-+++.+|...... ++ ..++.+.-+-
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~-~~----------------------------------~~~~~~~~ei 153 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGR-QL----------------------------------GQDPEAVANL 153 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCc-cc----------------------------------ccCHHHHHHH
Confidence 556666777777777888887777776531100 00 0011222345
Q ss_pred HHHHHhhcCCCEEEE--ecCC----HHHHHHHHHcCCCEEEEcCC
Q 039466 208 IEWLRSITNLPILIK--GVLT----REDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 208 l~~lr~~~~lPiilK--GI~s----~eDA~~a~~~G~dgI~VSNH 246 (263)
++++|+.++.||++| +..+ .+-|+.+.++|+|+|.++|.
T Consensus 154 v~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~ 198 (289)
T cd02810 154 LKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINT 198 (289)
T ss_pred HHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 888999899999999 4555 55677777899999999986
No 49
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=97.84 E-value=0.0002 Score=66.04 Aligned_cols=151 Identities=17% Similarity=0.103 Sum_probs=96.9
Q ss_pred hccccceeccccc--cccccccccccC-----CcccccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCCCCccH
Q 039466 43 AFHGITFWPRILV--DVCRIDISTSTL-----DYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSI 115 (263)
Q Consensus 43 af~~~~l~pr~L~--~v~~~d~st~~l-----G~~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~si 115 (263)
.|+++.|+|+--. .-+++|++.+|- .+.+..||+-|+|- .-+|..+|.+-++.|...++-- .+++
T Consensus 10 ~f~DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMd------TV~~~~mA~~la~~g~~~~iHk--~~~~ 81 (346)
T PRK05096 10 GFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMD------TVGTFEMAKALASFDILTAVHK--HYSV 81 (346)
T ss_pred CceeEEEecCcCccccHHHceecceeeeecccccccCCceEecCCC------ccccHHHHHHHHHCCCeEEEec--CCCH
Confidence 5999999998543 336889977764 34567999988874 2367789999999998888744 3566
Q ss_pred HHHHH----hccc------c-ccCHHHHHHHHHHHHH--cCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccC
Q 039466 116 EEVAA----SCNA------A-YKKRDMAATLVQRAER--NGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTK 182 (263)
Q Consensus 116 eeV~~----~~~~------~-~~d~~~~~~li~ra~~--aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~ 182 (263)
|+-++ ..+. + ..-.+...+.++...+ +|++.|+ +|+.. |.
T Consensus 82 e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g~D~iv--iD~Ah----------Gh--------------- 134 (346)
T PRK05096 82 EEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPALNFIC--IDVAN----------GY--------------- 134 (346)
T ss_pred HHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCCCCEEE--EECCC----------Cc---------------
Confidence 76322 2211 0 0011112233333333 4666655 55432 11
Q ss_pred CCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCCEEEEcCC
Q 039466 183 VTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITN-LPILIKGVLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~-lPiilKGI~s~eDA~~a~~~G~dgI~VSNH 246 (263)
...--+-|++||+..+ ++||.=-|-|+|-|+.++++|||+|-|.=-
T Consensus 135 ------------------s~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIG 181 (346)
T PRK05096 135 ------------------SEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIG 181 (346)
T ss_pred ------------------HHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEccc
Confidence 0011256899999885 676666699999999999999999977533
No 50
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=97.83 E-value=0.00018 Score=67.89 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=31.6
Q ss_pred HHHHHHHhhcCCCEEEEec---CCH-HHHHHHHHcCCCEEEEcCCC
Q 039466 206 KDIEWLRSITNLPILIKGV---LTR-EDAIKAVEVGVAGIIVSNHG 247 (263)
Q Consensus 206 ~dl~~lr~~~~lPiilKGI---~s~-eDA~~a~~~G~dgI~VSNHG 247 (263)
+-++|+++.+++||++|=- -+. +-|+.|.+.|+|||++.|.=
T Consensus 172 ~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 172 EVCGWINAKATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred HHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence 4468899999999999932 122 33555778999999999963
No 51
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=97.80 E-value=0.00016 Score=66.39 Aligned_cols=167 Identities=10% Similarity=0.090 Sum_probs=91.8
Q ss_pred ccCCcccccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCCCCccHHHH-------HHhcc---c---cccCHHH
Q 039466 65 STLDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEV-------AASCN---A---AYKKRDM 131 (263)
Q Consensus 65 ~~lG~~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV-------~~~~~---~---~~~d~~~ 131 (263)
++|| +.+||+.+||++. . ...+|.++.++|-.-+++... .+.|++ ++... + +...+ .
T Consensus 6 ~~lg--i~~Pii~apM~~~--s----~~~la~avs~aGglG~l~~~~-~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~-~ 75 (307)
T TIGR03151 6 DLLG--IEYPIFQGGMAWV--A----TGSLAAAVSNAGGLGIIGAGN-APPDVVRKEIRKVKELTDKPFGVNIMLLSP-F 75 (307)
T ss_pred HHhC--CCCCEEcCCCCCC--C----CHHHHHHHHhCCCcceecccc-CCHHHHHHHHHHHHHhcCCCcEEeeecCCC-C
Confidence 4565 4589999999862 2 246888888888777777543 344443 33222 1 12111 1
Q ss_pred HHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhh-hhh-hh---hhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHH
Q 039466 132 AATLVQRAERNGFMALVLTADTPRLDRREADIKN-KMI-AQ---QLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWK 206 (263)
Q Consensus 132 ~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~-~~~-~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 206 (263)
..+.++.+.+.|.+.+.++...|.. --..++. +.. ++ +.+..........+.....+ ...........+|.
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g~p~~--~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g--~eagGh~g~~~~~~ 151 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAGNPGK--YIPRLKENGVKVIPVVASVALAKRMEKAGADAVIAEG--MESGGHIGELTTMA 151 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcHH--HHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEEEC--cccCCCCCCCcHHH
Confidence 2455666677888888775443310 0011111 110 11 11110000000000000000 00000001123799
Q ss_pred HHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 207 DIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 207 dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
-++.+++..++|||.-| |.+++|+..|+..|++||++..
T Consensus 152 ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~gV~iGt 191 (307)
T TIGR03151 152 LVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAEAVQMGT 191 (307)
T ss_pred HHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEeecch
Confidence 99999999999999998 9999999999999999999865
No 52
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.76 E-value=0.00059 Score=59.56 Aligned_cols=136 Identities=20% Similarity=0.237 Sum_probs=81.7
Q ss_pred HHHHHHHHCCCceeecCCCCccHHHHHHhcc---c-------cccCHHHHHHHHHHHHHcCCCEEEEccCCC-----CCc
Q 039466 93 ATARAAASCNTIMVLSFTSSCSIEEVAASCN---A-------AYKKRDMAATLVQRAERNGFMALVLTADTP-----RLD 157 (263)
Q Consensus 93 a~AraA~~~gi~~~lss~s~~sieeV~~~~~---~-------~~~d~~~~~~li~ra~~aG~~al~vTvD~~-----~~g 157 (263)
.+.+.++..++|+.++- ...++|++.+... . .++|++...++++ +.|-+.+++.+|.. +.|
T Consensus 63 ~i~~i~~~~~~pi~~gg-GI~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~---~~g~~~i~~sid~~~~~v~~~g 138 (230)
T TIGR00007 63 VIKKIVRETGVPVQVGG-GIRSLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLK---EYGPERIVVSLDARGGEVAVKG 138 (230)
T ss_pred HHHHHHHhcCCCEEEeC-CcCCHHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHH---HhCCCcEEEEEEEECCEEEEcC
Confidence 34555666778888754 4567777654321 1 4566665555444 45656788888843 235
Q ss_pred chHHHHhhhhhhhhhhhhhh-----ccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHH
Q 039466 158 RREADIKNKMIAQQLKNLEG-----LLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTREDAI 231 (263)
Q Consensus 158 ~R~~d~r~~~~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~ 231 (263)
|++....+...+ .+.+.. +...+.... . .....+|+.++.+++..++||++-| |.+.+|++
T Consensus 139 ~~~~~~~~~~~~--~~~~~~~g~~~ii~~~~~~~----------g-~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~ 205 (230)
T TIGR00007 139 WLEKSEVSLEEL--AKRLEELGLEGIIYTDISRD----------G-TLSGPNFELTKELVKAVNVPVIASGGVSSIDDLI 205 (230)
T ss_pred CcccCCCCHHHH--HHHHHhCCCCEEEEEeecCC----------C-CcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHH
Confidence 554321110000 011111 000011000 0 1123589999999999999999999 99999999
Q ss_pred HHHHcCCCEEEEcC
Q 039466 232 KAVEVGVAGIIVSN 245 (263)
Q Consensus 232 ~a~~~G~dgI~VSN 245 (263)
++.+.||+|++|+.
T Consensus 206 ~~~~~Gadgv~ig~ 219 (230)
T TIGR00007 206 ALKKLGVYGVIVGK 219 (230)
T ss_pred HHHHCCCCEEEEeH
Confidence 99999999999854
No 53
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.71 E-value=0.00011 Score=71.56 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCCEEEEcCCCC
Q 039466 201 PSLSWKDIEWLRSIT-NLPILIKGVLTREDAIKAVEVGVAGIIVSNHGA 248 (263)
Q Consensus 201 ~~~~W~dl~~lr~~~-~lPiilKGI~s~eDA~~a~~~G~dgI~VSNHGG 248 (263)
....|+.|+|||+.+ ++||+++.|.|+++|+.++++|||+|.|+.+.|
T Consensus 266 s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~G 314 (495)
T PTZ00314 266 SIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSG 314 (495)
T ss_pred chHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCC
Confidence 344589999999997 699999999999999999999999999987666
No 54
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.69 E-value=0.002 Score=56.16 Aligned_cols=136 Identities=19% Similarity=0.229 Sum_probs=81.9
Q ss_pred HHHHHHHHCCCceeecCCCCccHHHHHHh---ccc-------cccCHHHHHHHHHHHHHcCCCEEEEccCCCCC-----c
Q 039466 93 ATARAAASCNTIMVLSFTSSCSIEEVAAS---CNA-------AYKKRDMAATLVQRAERNGFMALVLTADTPRL-----D 157 (263)
Q Consensus 93 a~AraA~~~gi~~~lss~s~~sieeV~~~---~~~-------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~-----g 157 (263)
.+.+.++..++|.+++.. ..++|++.+. +.+ .+.|++...++.+ +.|-..+++.+|.... |
T Consensus 64 ~i~~i~~~~~~pv~~~Gg-I~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~---~~g~~~i~~sid~~~~~~~~~~ 139 (234)
T cd04732 64 LIEEIVKAVGIPVQVGGG-IRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLK---EYGGERIVVGLDAKDGKVATKG 139 (234)
T ss_pred HHHHHHHhcCCCEEEeCC-cCCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHH---HcCCceEEEEEEeeCCEEEECC
Confidence 455566677888887644 5677776542 222 4566666555544 4555688888886431 2
Q ss_pred chHHHHhhhhhhhhhhhhhh-----ccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHH
Q 039466 158 RREADIKNKMIAQQLKNLEG-----LLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTREDAI 231 (263)
Q Consensus 158 ~R~~d~r~~~~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~ 231 (263)
|++....+-..+ .+.+.. +...+... .... ...+|+.++.+++.+++||+.-| |.+.+|++
T Consensus 140 ~~~~~~~~~~~~--~~~~~~~ga~~iii~~~~~----------~g~~-~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~ 206 (234)
T cd04732 140 WLETSEVSLEEL--AKRFEELGVKAIIYTDISR----------DGTL-SGPNFELYKELAAATGIPVIASGGVSSLDDIK 206 (234)
T ss_pred CeeecCCCHHHH--HHHHHHcCCCEEEEEeecC----------CCcc-CCCCHHHHHHHHHhcCCCEEEecCCCCHHHHH
Confidence 221000000000 011110 00000100 0111 33689999999999999999999 99999999
Q ss_pred HHHHcCCCEEEEcC
Q 039466 232 KAVEVGVAGIIVSN 245 (263)
Q Consensus 232 ~a~~~G~dgI~VSN 245 (263)
++.+.|++|++|+.
T Consensus 207 ~~~~~Ga~gv~vg~ 220 (234)
T cd04732 207 ALKELGVAGVIVGK 220 (234)
T ss_pred HHHHCCCCEEEEeH
Confidence 99999999999964
No 55
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.67 E-value=0.00056 Score=60.13 Aligned_cols=136 Identities=20% Similarity=0.223 Sum_probs=81.5
Q ss_pred HHHHHHHHCCCceeecCCCCccHHHHHHh---ccc-------cccCHHHHHHHHHHHHHcCCCEEEEccCCC-----CCc
Q 039466 93 ATARAAASCNTIMVLSFTSSCSIEEVAAS---CNA-------AYKKRDMAATLVQRAERNGFMALVLTADTP-----RLD 157 (263)
Q Consensus 93 a~AraA~~~gi~~~lss~s~~sieeV~~~---~~~-------~~~d~~~~~~li~ra~~aG~~al~vTvD~~-----~~g 157 (263)
.+.+.|++.++|++++. ...++|++... +.+ .++|++...++.+ ..|.+.+++.+|.- +.|
T Consensus 67 ~i~~i~~~~~~~l~v~G-Gi~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~---~~g~~~i~~sid~~~~~v~~~g 142 (241)
T PRK13585 67 AIEKIIEAVGVPVQLGG-GIRSAEDAASLLDLGVDRVILGTAAVENPEIVRELSE---EFGSERVMVSLDAKDGEVVIKG 142 (241)
T ss_pred HHHHHHHHcCCcEEEcC-CcCCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHH---HhCCCcEEEEEEeeCCEEEECC
Confidence 56677888888888853 34566665433 222 4456655544433 45667788888852 124
Q ss_pred chHHHHhhhhhhhhhhhhh-----hccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHH
Q 039466 158 RREADIKNKMIAQQLKNLE-----GLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTREDAI 231 (263)
Q Consensus 158 ~R~~d~r~~~~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~ 231 (263)
|++..-.+-..+. +.+. .+...+.+. .. .....+|+.++++++.+++||++-| |.+++|+.
T Consensus 143 ~~~~~~~~~~~~~--~~~~~~G~~~i~~~~~~~----------~g-~~~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~ 209 (241)
T PRK13585 143 WTEKTGYTPVEAA--KRFEELGAGSILFTNVDV----------EG-LLEGVNTEPVKELVDSVDIPVIASGGVTTLDDLR 209 (241)
T ss_pred CcccCCCCHHHHH--HHHHHcCCCEEEEEeecC----------CC-CcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHH
Confidence 4432100000000 1111 000000000 00 1133689999999999999999999 99999999
Q ss_pred HHHHcCCCEEEEcC
Q 039466 232 KAVEVGVAGIIVSN 245 (263)
Q Consensus 232 ~a~~~G~dgI~VSN 245 (263)
++.+.||+|++|+.
T Consensus 210 ~~~~~Ga~gv~vgs 223 (241)
T PRK13585 210 ALKEAGAAGVVVGS 223 (241)
T ss_pred HHHHcCCCEEEEEH
Confidence 99999999999964
No 56
>PLN02826 dihydroorotate dehydrogenase
Probab=97.66 E-value=0.0019 Score=61.59 Aligned_cols=31 Identities=42% Similarity=0.681 Sum_probs=28.4
Q ss_pred cCCCEEEEe--cCCHHH----HHHHHHcCCCEEEEcC
Q 039466 215 TNLPILIKG--VLTRED----AIKAVEVGVAGIIVSN 245 (263)
Q Consensus 215 ~~lPiilKG--I~s~eD----A~~a~~~G~dgI~VSN 245 (263)
+++||++|. .++.+| |+.|.++|+|||+++|
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~N 297 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISN 297 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 579999999 788888 8889999999999999
No 57
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=97.65 E-value=0.00058 Score=59.60 Aligned_cols=163 Identities=11% Similarity=0.099 Sum_probs=86.8
Q ss_pred ccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCCCCccHH-------HHHHhc--c-c---cccCH-HHHHHHHH
Q 039466 72 SASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIE-------EVAASC--N-A---AYKKR-DMAATLVQ 137 (263)
Q Consensus 72 ~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~sie-------eV~~~~--~-~---~~~d~-~~~~~li~ 137 (263)
..|++.+||.+-. ....++++.+.|-.-.++... .+.+ ++.+.. + + +..+. ....+.++
T Consensus 2 ~~pi~~a~m~g~~------~~~~~~~~~~~G~ig~i~~~~-~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~ 74 (236)
T cd04730 2 RYPIIQAPMAGVS------TPELAAAVSNAGGLGFIGAGY-LTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLE 74 (236)
T ss_pred CCCEECCCCCCCC------CHHHHHHHHhCCCccccCCCC-CCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHH
Confidence 4799999987632 335666677776433444332 1222 233332 2 1 33332 34667888
Q ss_pred HHHHcCCCEEEEccCCCCCcchHHHHhhhhhhh------hhhhhhhccccCCCCCCCccHHHHHHHhcCC-CCCHHHHHH
Q 039466 138 RAERNGFMALVLTADTPRLDRREADIKNKMIAQ------QLKNLEGLLSTKVTSDTGSNLEAYAKETMDP-SLSWKDIEW 210 (263)
Q Consensus 138 ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~dl~~ 210 (263)
.+.++|++.+.+.-..+ ....+......++ +...+........+-....+. ..-+..... ...|+.++.
T Consensus 75 ~~~~~g~d~v~l~~~~~---~~~~~~~~~~~i~~i~~v~~~~~~~~~~~~gad~i~~~~~-~~~G~~~~~~~~~~~~i~~ 150 (236)
T cd04730 75 VALEEGVPVVSFSFGPP---AEVVERLKAAGIKVIPTVTSVEEARKAEAAGADALVAQGA-EAGGHRGTFDIGTFALVPE 150 (236)
T ss_pred HHHhCCCCEEEEcCCCC---HHHHHHHHHcCCEEEEeCCCHHHHHHHHHcCCCEEEEeCc-CCCCCCCccccCHHHHHHH
Confidence 99999999999865421 1111111111111 000000000000000000000 000000000 134778999
Q ss_pred HHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 211 LRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 211 lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
+++.+++||++=| |.+++|+.++++.|+|||+|+.
T Consensus 151 i~~~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS 186 (236)
T cd04730 151 VRDAVDIPVIAAGGIADGRGIAAALALGADGVQMGT 186 (236)
T ss_pred HHHHhCCCEEEECCCCCHHHHHHHHHcCCcEEEEch
Confidence 9999999999988 8899999999999999999974
No 58
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=97.65 E-value=0.00081 Score=62.39 Aligned_cols=145 Identities=16% Similarity=0.185 Sum_probs=87.6
Q ss_pred ChhHHHHHHHHHHCCCceeecCCCCccHHHHHHhccc--cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHH-Hh
Q 039466 88 PEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNA--AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREAD-IK 164 (263)
Q Consensus 88 ~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~--~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d-~r 164 (263)
|+.-...|+.++++|. -++--+..||...+.....| +.+|++...++++...++= .+.|+|.. ..|+...+ ..
T Consensus 76 p~~~~~aA~~~~~~g~-d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v--~~pVsvKi-R~g~~~~~t~~ 151 (333)
T PRK11815 76 PADLAEAAKLAEDWGY-DEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAV--SIPVTVKH-RIGIDDQDSYE 151 (333)
T ss_pred HHHHHHHHHHHHhcCC-CEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHc--CCceEEEE-EeeeCCCcCHH
Confidence 4444578888888883 46666778999888655433 8899999999999886541 23455543 22333211 00
Q ss_pred hhhhhhhhhhhhhccccCCCCCCCccHHHHH-HHh-------cCCCCCHHHHHHHHhhc-CCCEEEEe-cCCHHHHHHHH
Q 039466 165 NKMIAQQLKNLEGLLSTKVTSDTGSNLEAYA-KET-------MDPSLSWKDIEWLRSIT-NLPILIKG-VLTREDAIKAV 234 (263)
Q Consensus 165 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~W~dl~~lr~~~-~lPiilKG-I~s~eDA~~a~ 234 (263)
....+. +.+... .++.. .-+++.. .+. ..++.+|+.++.+++.. ++|||..| |.|++||.+++
T Consensus 152 ~~~~~~--~~l~~a---G~d~i--~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l 224 (333)
T PRK11815 152 FLCDFV--DTVAEA---GCDTF--IVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHL 224 (333)
T ss_pred HHHHHH--HHHHHh---CCCEE--EEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHH
Confidence 000110 111100 00000 0000000 001 11457899999999985 89999999 99999999999
Q ss_pred HcCCCEEEEc
Q 039466 235 EVGVAGIIVS 244 (263)
Q Consensus 235 ~~G~dgI~VS 244 (263)
+ |||||+|+
T Consensus 225 ~-~aDgVmIG 233 (333)
T PRK11815 225 Q-HVDGVMIG 233 (333)
T ss_pred h-cCCEEEEc
Confidence 8 79999984
No 59
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.63 E-value=0.0034 Score=54.89 Aligned_cols=140 Identities=15% Similarity=0.201 Sum_probs=80.8
Q ss_pred HHHHHHHHCCCceeecCCCCccHHHHHHhcc-c---------cccCHHHHHHHHHHHHHcCCCEEEEccCCCCC------
Q 039466 93 ATARAAASCNTIMVLSFTSSCSIEEVAASCN-A---------AYKKRDMAATLVQRAERNGFMALVLTADTPRL------ 156 (263)
Q Consensus 93 a~AraA~~~gi~~~lss~s~~sieeV~~~~~-~---------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~------ 156 (263)
.+.+.+++.++|.+++.. ..+++++.+... + .+.|++...+++++ -|-+.+++++|....
T Consensus 65 ~~~~i~~~~~~pv~~~gg-i~~~~d~~~~~~~G~~~vilg~~~l~~~~~~~~~~~~---~~~~~i~vsld~~~~~~~~~~ 140 (232)
T TIGR03572 65 LISNLAEECFMPLTVGGG-IRSLEDAKKLLSLGADKVSINTAALENPDLIEEAARR---FGSQCVVVSIDVKKELDGSDY 140 (232)
T ss_pred HHHHHHHhCCCCEEEECC-CCCHHHHHHHHHcCCCEEEEChhHhcCHHHHHHHHHH---cCCceEEEEEEeccCCCCCcE
Confidence 355667778888887644 457777654321 1 56777766666544 355558899995321
Q ss_pred -----cchHHHHhhhhh-hhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHH
Q 039466 157 -----DRREADIKNKMI-AQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTRED 229 (263)
Q Consensus 157 -----g~R~~d~r~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eD 229 (263)
||.+.. ... ..-.+.+... .+.......... .. .....+|+.++.+++..++||+.-| |.+.+|
T Consensus 141 ~v~~~~~~~~~---~~~~~~~~~~~~~~---G~d~i~i~~i~~--~g-~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~d 211 (232)
T TIGR03572 141 KVYSDNGRRAT---GRDPVEWAREAEQL---GAGEILLNSIDR--DG-TMKGYDLELIKTVSDAVSIPVIALGGAGSLDD 211 (232)
T ss_pred EEEECCCcccC---CCCHHHHHHHHHHc---CCCEEEEeCCCc--cC-CcCCCCHHHHHHHHhhCCCCEEEECCCCCHHH
Confidence 121100 000 0000111100 000000000000 00 1133589999999999999999999 999999
Q ss_pred HHH-HHHcCCCEEEEcC
Q 039466 230 AIK-AVEVGVAGIIVSN 245 (263)
Q Consensus 230 A~~-a~~~G~dgI~VSN 245 (263)
+.. +.+.||+||+|+.
T Consensus 212 i~~~l~~~gadgV~vg~ 228 (232)
T TIGR03572 212 LVEVALEAGASAVAAAS 228 (232)
T ss_pred HHHHHHHcCCCEEEEeh
Confidence 999 6679999999975
No 60
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.57 E-value=0.0021 Score=56.67 Aligned_cols=140 Identities=16% Similarity=0.196 Sum_probs=81.3
Q ss_pred HHHHHHHCCCceeecCCCCccHHHHHHhc---cc-------cccCHHHHHHHHHHHHHcCCCEEEEccCCCC--------
Q 039466 94 TARAAASCNTIMVLSFTSSCSIEEVAASC---NA-------AYKKRDMAATLVQRAERNGFMALVLTADTPR-------- 155 (263)
Q Consensus 94 ~AraA~~~gi~~~lss~s~~sieeV~~~~---~~-------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~-------- 155 (263)
+.+.+++.++|.+++ ....++|++.+.- .+ .+.|++...+++++ -+-..+++.+|...
T Consensus 63 i~~i~~~~~~pv~~~-GGI~s~~d~~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~---~~~~~i~~~ld~k~~~~~~~~v 138 (243)
T cd04731 63 VERVAEEVFIPLTVG-GGIRSLEDARRLLRAGADKVSINSAAVENPELIREIAKR---FGSQCVVVSIDAKRRGDGGYEV 138 (243)
T ss_pred HHHHHHhCCCCEEEe-CCCCCHHHHHHHHHcCCceEEECchhhhChHHHHHHHHH---cCCCCEEEEEEeeecCCCceEE
Confidence 444556678887654 4556778775432 11 67788877776554 34456888888642
Q ss_pred --CcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHH
Q 039466 156 --LDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTREDAIK 232 (263)
Q Consensus 156 --~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~ 232 (263)
.||.+........+. +.+.......+. ..+ ..... .....+|+.++.+++.+++|||.-| |.+++|+..
T Consensus 139 ~~~~~~~~~~~~~~~~~--~~l~~~G~d~i~---v~~--i~~~g-~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~ 210 (243)
T cd04731 139 YTHGGRKPTGLDAVEWA--KEVEELGAGEIL---LTS--MDRDG-TKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVE 210 (243)
T ss_pred EEcCCceecCCCHHHHH--HHHHHCCCCEEE---Eec--cCCCC-CCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHH
Confidence 133221110000000 111100000000 000 00000 0133589999999999999999999 999999999
Q ss_pred HHHc-CCCEEEEcC
Q 039466 233 AVEV-GVAGIIVSN 245 (263)
Q Consensus 233 a~~~-G~dgI~VSN 245 (263)
+++. |||+++|+.
T Consensus 211 ~l~~~g~dgv~vg~ 224 (243)
T cd04731 211 AFEEGGADAALAAS 224 (243)
T ss_pred HHHhCCCCEEEEeH
Confidence 9997 999999964
No 61
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=97.55 E-value=0.0016 Score=58.07 Aligned_cols=141 Identities=17% Similarity=0.213 Sum_probs=83.2
Q ss_pred HHHHHHHHCCCceeecCCCCccHHHHHHhc---cc-------cccCHHHHHHHHHHHHHcCCCEEEEccCCCC-------
Q 039466 93 ATARAAASCNTIMVLSFTSSCSIEEVAASC---NA-------AYKKRDMAATLVQRAERNGFMALVLTADTPR------- 155 (263)
Q Consensus 93 a~AraA~~~gi~~~lss~s~~sieeV~~~~---~~-------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~------- 155 (263)
.+.+.+++.++|..++ ....+.+++.+.. .. .+.|++...++.++- |-+.+++.+|.-.
T Consensus 65 ~i~~i~~~~~~pv~~~-GGi~s~~d~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~---~~~~iv~slD~~~g~~~~~~ 140 (254)
T TIGR00735 65 VVERTAETVFIPLTVG-GGIKSIEDVDKLLRAGADKVSINTAAVKNPELIYELADRF---GSQCIVVAIDAKRVYVNSYC 140 (254)
T ss_pred HHHHHHHhcCCCEEEE-CCCCCHHHHHHHHHcCCCEEEEChhHhhChHHHHHHHHHc---CCCCEEEEEEeccCCCCCCc
Confidence 3456667788888775 4456778766532 11 567887776665543 5568899998521
Q ss_pred ------CcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHH
Q 039466 156 ------LDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTRE 228 (263)
Q Consensus 156 ------~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~e 228 (263)
.||.+..-..-..+ .+.+.......+- ...... ....+..+|+.++.+++.+++|||.-| |.+++
T Consensus 141 ~~~v~i~gw~~~~~~~~~~~--~~~l~~~G~~~ii---vt~i~~---~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~ 212 (254)
T TIGR00735 141 WYEVYIYGGRESTGLDAVEW--AKEVEKLGAGEIL---LTSMDK---DGTKSGYDLELTKAVSEAVKIPVIASGGAGKPE 212 (254)
T ss_pred cEEEEEeCCcccCCCCHHHH--HHHHHHcCCCEEE---EeCcCc---ccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHH
Confidence 12322110000000 0111100000000 000000 011245789999999999999999999 99999
Q ss_pred HHHHHHHcC-CCEEEEcC
Q 039466 229 DAIKAVEVG-VAGIIVSN 245 (263)
Q Consensus 229 DA~~a~~~G-~dgI~VSN 245 (263)
|+.++.+.| |+||+++.
T Consensus 213 di~~~~~~g~~dgv~~g~ 230 (254)
T TIGR00735 213 HFYEAFTKGKADAALAAS 230 (254)
T ss_pred HHHHHHHcCCcceeeEhH
Confidence 999999988 99999953
No 62
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=97.53 E-value=0.00087 Score=61.18 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHhhc--CCCEEEEe-cCCHHHHHHHHHcCCCEEEEcCC
Q 039466 202 SLSWKDIEWLRSIT--NLPILIKG-VLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 202 ~~~W~dl~~lr~~~--~lPiilKG-I~s~eDA~~a~~~G~dgI~VSNH 246 (263)
+.+|+.+.++++.. ++|||.-| |.+.+||.+++.+||++|.|..-
T Consensus 236 p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta 283 (299)
T cd02940 236 PIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTA 283 (299)
T ss_pred hHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEcee
Confidence 34699999999999 89999999 99999999999999999998643
No 63
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.50 E-value=0.001 Score=61.23 Aligned_cols=141 Identities=14% Similarity=0.120 Sum_probs=86.3
Q ss_pred CcccccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCCCC-cc-------HHHHHHhccc--------cccCHHH
Q 039466 68 DYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSS-CS-------IEEVAASCNA--------AYKKRDM 131 (263)
Q Consensus 68 G~~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~-~s-------ieeV~~~~~~--------~~~d~~~ 131 (263)
|.++..|+++|||.+. .+...-+.+.+.|..++.+-.-+ .+ ..+.....+. .-.|++.
T Consensus 3 ~~~~~~~l~lAPm~~~------t~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~~~~~ 76 (319)
T TIGR00737 3 NIQLKSRVVLAPMAGV------TDSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGSDPDT 76 (319)
T ss_pred CccCCCCEEecCCCCC------CcHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCCCHHH
Confidence 4578899999999863 23445566777775544332211 11 1122222221 2358888
Q ss_pred HHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHH
Q 039466 132 AATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWL 211 (263)
Q Consensus 132 ~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~l 211 (263)
..+..++++++||++|-++.-+|. .+|.+ .+. +... ..++.+--+-++.+
T Consensus 77 ~~~aa~~~~~~G~d~IelN~gcP~-~~~~~---~~~------------------------Gs~l--~~~~~~~~ei~~~v 126 (319)
T TIGR00737 77 MAEAAKINEELGADIIDINMGCPV-PKITK---KGA------------------------GSAL--LRDPDLIGKIVKAV 126 (319)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCH-HHhcC---CCc------------------------cchH--hCCHHHHHHHHHHH
Confidence 888899999999999999888773 11110 000 0000 01222333568889
Q ss_pred HhhcCCCEEEEe---c-----CCHHHHHHHHHcCCCEEEEc
Q 039466 212 RSITNLPILIKG---V-----LTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 212 r~~~~lPiilKG---I-----~s~eDA~~a~~~G~dgI~VS 244 (263)
|+.+++||.+|= . ...+-|+.+.+.|+|+|.|+
T Consensus 127 r~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh 167 (319)
T TIGR00737 127 VDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLH 167 (319)
T ss_pred HhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEE
Confidence 999999999993 1 12455677778999999994
No 64
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.49 E-value=0.0032 Score=58.69 Aligned_cols=41 Identities=29% Similarity=0.447 Sum_probs=30.8
Q ss_pred HHHHHHHhhcC-----CCEEEEec--CC----HHHHHHHHHcCCCEEEEcCC
Q 039466 206 KDIEWLRSITN-----LPILIKGV--LT----REDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 206 ~dl~~lr~~~~-----lPiilKGI--~s----~eDA~~a~~~G~dgI~VSNH 246 (263)
+-++++|+.++ +||++|== .+ .+-|+.+.++|+|||+++|-
T Consensus 196 eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt 247 (344)
T PRK05286 196 ELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNT 247 (344)
T ss_pred HHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCC
Confidence 45788998887 99999931 23 33456667799999999993
No 65
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.47 E-value=0.0024 Score=56.69 Aligned_cols=141 Identities=15% Similarity=0.185 Sum_probs=80.2
Q ss_pred HHHHHHHHCCCceeecCCCCccHHHHHHhc---cc-------cccCHHHHHHHHHHHHHcCCCEEEEccCCCC-------
Q 039466 93 ATARAAASCNTIMVLSFTSSCSIEEVAASC---NA-------AYKKRDMAATLVQRAERNGFMALVLTADTPR------- 155 (263)
Q Consensus 93 a~AraA~~~gi~~~lss~s~~sieeV~~~~---~~-------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~------- 155 (263)
.+.+.+++.++|.+++ ....+.+++.+.. .. .++|++...++.++ -|-..+++.+|...
T Consensus 65 ~i~~i~~~~~ipv~~~-GGi~s~~~~~~~l~~Ga~~Viigt~~l~~p~~~~ei~~~---~g~~~iv~slD~~~~~~~~~~ 140 (253)
T PRK02083 65 VVERVAEQVFIPLTVG-GGIRSVEDARRLLRAGADKVSINSAAVANPELISEAADR---FGSQCIVVAIDAKRDPEPGRW 140 (253)
T ss_pred HHHHHHHhCCCCEEee-CCCCCHHHHHHHHHcCCCEEEEChhHhhCcHHHHHHHHH---cCCCCEEEEEEeccCCCCCCE
Confidence 4555666778887765 4456777765432 11 56777766665443 35567888888531
Q ss_pred ----CcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHHH
Q 039466 156 ----LDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTREDA 230 (263)
Q Consensus 156 ----~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA 230 (263)
.||.+..-...+.+. ..+.......+- ...+.+ ... ....+|+-++++++.+++|||.-| |.+.+|.
T Consensus 141 ~v~~~~~~~~~~~~~~~~~--~~~~~~g~~~ii---~~~i~~--~g~-~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~ 212 (253)
T PRK02083 141 EVYTHGGRKPTGLDAVEWA--KEVEELGAGEIL---LTSMDR--DGT-KNGYDLELTRAVSDAVNVPVIASGGAGNLEHF 212 (253)
T ss_pred EEEEcCCceecCCCHHHHH--HHHHHcCCCEEE---EcCCcC--CCC-CCCcCHHHHHHHHhhCCCCEEEECCCCCHHHH
Confidence 122211000000000 111100000000 000000 000 123589999999999999999999 9999999
Q ss_pred HHHHHc-CCCEEEEcC
Q 039466 231 IKAVEV-GVAGIIVSN 245 (263)
Q Consensus 231 ~~a~~~-G~dgI~VSN 245 (263)
..+.+. ||+|++|+.
T Consensus 213 ~~~~~~~G~~gvivg~ 228 (253)
T PRK02083 213 VEAFTEGGADAALAAS 228 (253)
T ss_pred HHHHHhCCccEEeEhH
Confidence 999985 999999965
No 66
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.44 E-value=0.001 Score=58.12 Aligned_cols=139 Identities=16% Similarity=0.141 Sum_probs=82.0
Q ss_pred HHHHHHHCCCceeecCCCCccHHHHHHhcc---c-------cccCHHHHHHHHHHHHHcCCCEEEEccCCCC-----Ccc
Q 039466 94 TARAAASCNTIMVLSFTSSCSIEEVAASCN---A-------AYKKRDMAATLVQRAERNGFMALVLTADTPR-----LDR 158 (263)
Q Consensus 94 ~AraA~~~gi~~~lss~s~~sieeV~~~~~---~-------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~-----~g~ 158 (263)
+.+.++..++|.+++ ....++|++.+... . .+.+++...+++++. .+.+++.+|... .||
T Consensus 66 i~~i~~~~~~pv~~~-GGI~~~ed~~~~~~~Ga~~vilg~~~l~~~~~l~ei~~~~----~~~i~vsid~k~~~v~~~g~ 140 (233)
T PRK00748 66 IEAIVKAVDIPVQVG-GGIRSLETVEALLDAGVSRVIIGTAAVKNPELVKEACKKF----PGKIVVGLDARDGKVATDGW 140 (233)
T ss_pred HHHHHHHCCCCEEEc-CCcCCHHHHHHHHHcCCCEEEECchHHhCHHHHHHHHHHh----CCCceeeeeccCCEEEEccC
Confidence 344556678888875 44578888754321 1 567777777776654 234777888642 355
Q ss_pred hHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcC
Q 039466 159 READIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVG 237 (263)
Q Consensus 159 R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G 237 (263)
++..-.+-..+ .+.+.......+- .+.........+ .+|+-++.+++.+++|||.-| |.+++|++++.+.|
T Consensus 141 ~~~~~~~~~e~--~~~~~~~g~~~ii-----~~~~~~~g~~~G-~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g 212 (233)
T PRK00748 141 LETSGVTAEDL--AKRFEDAGVKAII-----YTDISRDGTLSG-PNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLG 212 (233)
T ss_pred eecCCCCHHHH--HHHHHhcCCCEEE-----EeeecCcCCcCC-CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC
Confidence 43211000000 0111100000000 000000111223 689999999999999999999 99999999999998
Q ss_pred -CCEEEEcC
Q 039466 238 -VAGIIVSN 245 (263)
Q Consensus 238 -~dgI~VSN 245 (263)
|+|++|+.
T Consensus 213 ~~~gv~vg~ 221 (233)
T PRK00748 213 AVEGVIVGR 221 (233)
T ss_pred CccEEEEEH
Confidence 99999975
No 67
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=97.43 E-value=0.001 Score=60.03 Aligned_cols=43 Identities=21% Similarity=0.387 Sum_probs=39.0
Q ss_pred CCHHHHHHHHhhc--CCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 203 LSWKDIEWLRSIT--NLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 203 ~~W~dl~~lr~~~--~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
..|+.++.+++.. ++|||.-| |.+++||.+++++|||+|.|+.
T Consensus 228 ~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~ 273 (289)
T cd02810 228 LALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVAT 273 (289)
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcH
Confidence 4688899999998 89999999 9999999999999999998853
No 68
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=97.42 E-value=0.0031 Score=57.38 Aligned_cols=40 Identities=20% Similarity=0.354 Sum_probs=36.7
Q ss_pred HHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 205 WKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 205 W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
++.+..+++..++|||.-| |.+++||.++++.|||+|.|+
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~ig 263 (300)
T TIGR01037 223 LRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVG 263 (300)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeec
Confidence 4678889999999999988 999999999999999999885
No 69
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=97.42 E-value=0.00098 Score=57.92 Aligned_cols=156 Identities=17% Similarity=0.320 Sum_probs=92.2
Q ss_pred ccccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCCCCccHHHHHHhccc--cccCHHHHHHHHHHHHHc-CCCE
Q 039466 70 KISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNA--AYKKRDMAATLVQRAERN-GFMA 146 (263)
Q Consensus 70 ~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~--~~~d~~~~~~li~ra~~a-G~~a 146 (263)
+...|+++.=.|. .|+.-...|+-+.++|.- .+--+..|+...++...-| +..+++...++++..+++ +
T Consensus 52 ~~~~p~~~qi~g~----~~~~~~~aa~~~~~aG~d-~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~--- 123 (231)
T cd02801 52 PEERPLIVQLGGS----DPETLAEAAKIVEELGAD-GIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP--- 123 (231)
T ss_pred ccCCCEEEEEcCC----CHHHHHHHHHHHHhcCCC-EEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC---
Confidence 3456665433222 245445777788888854 3444555776666544333 777888888988888643 3
Q ss_pred EEEccCCCCCcchHH-HHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-c
Q 039466 147 LVLTADTPRLDRREA-DIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-V 224 (263)
Q Consensus 147 l~vTvD~~~~g~R~~-d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I 224 (263)
+.++++.. .|+... +... +. +.+... .++.... +.......+.+..+|+.++.+++..++||+.-| |
T Consensus 124 ~~v~vk~r-~~~~~~~~~~~---~~--~~l~~~---Gvd~i~v--~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi 192 (231)
T cd02801 124 IPVTVKIR-LGWDDEEETLE---LA--KALEDA---GASALTV--HGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDI 192 (231)
T ss_pred CCEEEEEe-eccCCchHHHH---HH--HHHHHh---CCCEEEE--CCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCC
Confidence 55566643 234322 2211 00 111100 0000000 000001113345689999999999999999999 9
Q ss_pred CCHHHHHHHHHc-CCCEEEEc
Q 039466 225 LTREDAIKAVEV-GVAGIIVS 244 (263)
Q Consensus 225 ~s~eDA~~a~~~-G~dgI~VS 244 (263)
.+++|+.++++. |+|+|+++
T Consensus 193 ~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 193 FSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred CCHHHHHHHHHhcCCCEEEEc
Confidence 999999999997 89999985
No 70
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.34 E-value=0.0011 Score=58.72 Aligned_cols=140 Identities=16% Similarity=0.147 Sum_probs=86.7
Q ss_pred HHHHHHHHHCCCceeecCCCCccHHHHHHhcc-c---------cccCHHHHHHHHHHHHHcCCCEEEEccCCC-----CC
Q 039466 92 VATARAAASCNTIMVLSFTSSCSIEEVAASCN-A---------AYKKRDMAATLVQRAERNGFMALVLTADTP-----RL 156 (263)
Q Consensus 92 ~a~AraA~~~gi~~~lss~s~~sieeV~~~~~-~---------~~~d~~~~~~li~ra~~aG~~al~vTvD~~-----~~ 156 (263)
..+.+.+++.++|..++- ...++|++.+.-. + .++|+++..+++++.. +.+++.+|.. ..
T Consensus 65 ~~i~~i~~~~~~pv~vgG-Girs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~----~~i~vsld~~~~~v~~~ 139 (241)
T PRK14024 65 ELLAEVVGKLDVKVELSG-GIRDDESLEAALATGCARVNIGTAALENPEWCARVIAEHG----DRVAVGLDVRGHTLAAR 139 (241)
T ss_pred HHHHHHHHHcCCCEEEcC-CCCCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhh----hhEEEEEEEeccEeccC
Confidence 356667778899999874 4578898875431 1 7899999998888763 3466666642 12
Q ss_pred cchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHH
Q 039466 157 DRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVE 235 (263)
Q Consensus 157 g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~ 235 (263)
||.+.. .+-..+ .+.+.......+- -+.......+.+ .+|+-++.+++..++|||.-| |.|.+|++++.+
T Consensus 140 Gw~~~~-~~~~~~--~~~l~~~G~~~ii-----v~~~~~~g~~~G-~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~ 210 (241)
T PRK14024 140 GWTRDG-GDLWEV--LERLDSAGCSRYV-----VTDVTKDGTLTG-PNLELLREVCARTDAPVVASGGVSSLDDLRALAE 210 (241)
T ss_pred CeeecC-ccHHHH--HHHHHhcCCCEEE-----EEeecCCCCccC-CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhh
Confidence 665421 111111 1111110000000 000011112233 489999999999999999999 999999999864
Q ss_pred ---cCCCEEEEcC
Q 039466 236 ---VGVAGIIVSN 245 (263)
Q Consensus 236 ---~G~dgI~VSN 245 (263)
.||+|++|+.
T Consensus 211 ~~~~GvdgV~igr 223 (241)
T PRK14024 211 LVPLGVEGAIVGK 223 (241)
T ss_pred hccCCccEEEEeH
Confidence 5999999964
No 71
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.33 E-value=0.0062 Score=53.74 Aligned_cols=135 Identities=11% Similarity=0.112 Sum_probs=84.4
Q ss_pred HHHHHHHHCCCceeecCCCCccHHHHHHhcc---c-------cccCHHHHHHHHHHHHHcCCCEEEEccCCCC-----Cc
Q 039466 93 ATARAAASCNTIMVLSFTSSCSIEEVAASCN---A-------AYKKRDMAATLVQRAERNGFMALVLTADTPR-----LD 157 (263)
Q Consensus 93 a~AraA~~~gi~~~lss~s~~sieeV~~~~~---~-------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~-----~g 157 (263)
.+.+.+++.++|..++ ....++|++.+.-. . .++|++..+++.++ -| ..+++.+|.-- .|
T Consensus 67 ~I~~i~~~~~~pi~vG-GGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~---fg-~~ivvslD~~~g~v~~~g 141 (234)
T PRK13587 67 YIKSLRRLTTKDIEVG-GGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHT---FP-GRIYLSVDAYGEDIKVNG 141 (234)
T ss_pred HHHHHHhhcCCeEEEc-CCcCCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHH---cC-CCEEEEEEeeCCEEEecC
Confidence 4667778889998887 44578898876432 1 45677776666554 35 45999999632 14
Q ss_pred chHHHHhhhhhhhhhhhhhhcc-----ccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHH
Q 039466 158 RREADIKNKMIAQQLKNLEGLL-----STKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTREDAI 231 (263)
Q Consensus 158 ~R~~d~r~~~~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~ 231 (263)
|.+..-..-+.+ .+.+.... ..+....+ .....+++-++.+++.+++||++-| |.|.||.+
T Consensus 142 w~~~~~~~~~~~--~~~~~~~g~~~ii~tdi~~dG-----------t~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~ 208 (234)
T PRK13587 142 WEEDTELNLFSF--VRQLSDIPLGGIIYTDIAKDG-----------KMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQ 208 (234)
T ss_pred CcccCCCCHHHH--HHHHHHcCCCEEEEecccCcC-----------CCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHH
Confidence 433111000000 01111000 00010000 0123578889999999999999999 99999999
Q ss_pred HHHHcCCCEEEEcC
Q 039466 232 KAVEVGVAGIIVSN 245 (263)
Q Consensus 232 ~a~~~G~dgI~VSN 245 (263)
++.+.|+++++|+.
T Consensus 209 ~l~~~G~~~vivG~ 222 (234)
T PRK13587 209 RLASLNVHAAIIGK 222 (234)
T ss_pred HHHHcCCCEEEEhH
Confidence 99999999999964
No 72
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=97.31 E-value=0.0038 Score=57.34 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=32.1
Q ss_pred HHH-HHHHHhhcCCCEEEEecCCHH----HHHHHHHcCCCEEEEcCCC
Q 039466 205 WKD-IEWLRSITNLPILIKGVLTRE----DAIKAVEVGVAGIIVSNHG 247 (263)
Q Consensus 205 W~d-l~~lr~~~~lPiilKGI~s~e----DA~~a~~~G~dgI~VSNHG 247 (263)
+++ ++++++.++.||++|===+.+ =|+.+.++|+|||++.|-=
T Consensus 149 l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~ 196 (310)
T COG0167 149 LEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGADGLIAINTT 196 (310)
T ss_pred HHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCCcEEEEEeec
Confidence 444 679999999999999211233 3566678999999999943
No 73
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=97.31 E-value=0.0023 Score=58.43 Aligned_cols=111 Identities=13% Similarity=0.189 Sum_probs=74.9
Q ss_pred HHHHHHHHHCCCceeecCCCCcc----------HHHHHHhccc--cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcch
Q 039466 92 VATARAAASCNTIMVLSFTSSCS----------IEEVAASCNA--AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRR 159 (263)
Q Consensus 92 ~a~AraA~~~gi~~~lss~s~~s----------ieeV~~~~~~--~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R 159 (263)
..+++.+.+.|.-.+.=+. .|+ +++|++..+. +.|.. .+.+..++++++|+++|+|+- ..| |
T Consensus 132 ~~~i~~~~~~g~~~i~l~~-~~p~~~~~~~~~~i~~l~~~~~~pvivK~v-~s~~~a~~a~~~G~d~I~v~~---~gG-~ 205 (299)
T cd02809 132 EDLLRRAEAAGYKALVLTV-DTPVLGRRLTWDDLAWLRSQWKGPLILKGI-LTPEDALRAVDAGADGIVVSN---HGG-R 205 (299)
T ss_pred HHHHHHHHHcCCCEEEEec-CCCCCCCCCCHHHHHHHHHhcCCCEEEeec-CCHHHHHHHHHCCCCEEEEcC---CCC-C
Confidence 3566777777765433222 233 3455555432 33432 344567888999999999872 111 1
Q ss_pred HHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhc--CCCEEEEe-cCCHHHHHHHHHc
Q 039466 160 EADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSIT--NLPILIKG-VLTREDAIKAVEV 236 (263)
Q Consensus 160 ~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~--~lPiilKG-I~s~eDA~~a~~~ 236 (263)
. ......+|+-|.++++.. ++|||.-| |.+++|+.+++.+
T Consensus 206 ~-------------------------------------~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~l 248 (299)
T cd02809 206 Q-------------------------------------LDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALAL 248 (299)
T ss_pred C-------------------------------------CCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHc
Confidence 0 001334789999998877 49999999 9999999999999
Q ss_pred CCCEEEEcC
Q 039466 237 GVAGIIVSN 245 (263)
Q Consensus 237 G~dgI~VSN 245 (263)
|||+|.|..
T Consensus 249 GAd~V~ig~ 257 (299)
T cd02809 249 GADAVLIGR 257 (299)
T ss_pred CCCEEEEcH
Confidence 999999864
No 74
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=97.27 E-value=0.00088 Score=58.05 Aligned_cols=85 Identities=16% Similarity=0.248 Sum_probs=62.4
Q ss_pred HHHHhccc--cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHH
Q 039466 117 EVAASCNA--AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAY 194 (263)
Q Consensus 117 eV~~~~~~--~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 194 (263)
|+....|. ++.+.....++.++.+++|+++|-+..+-..
T Consensus 16 e~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~--------------------------------------- 56 (217)
T cd00331 16 EVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTEPKY--------------------------------------- 56 (217)
T ss_pred EecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEEeCccc---------------------------------------
Confidence 33344442 4555556778888889999999866554211
Q ss_pred HHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcCC
Q 039466 195 AKETMDPSLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 195 ~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSNH 246 (263)
+ .-+.++++.+++..++||++|| |.+++.++.+.+.|+|+|.|..-
T Consensus 57 ----~--~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~ 103 (217)
T cd00331 57 ----F--QGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVA 103 (217)
T ss_pred ----c--CCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeec
Confidence 0 1134788889998999999999 78888999999999999997554
No 75
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=97.26 E-value=0.0097 Score=55.05 Aligned_cols=68 Identities=12% Similarity=0.038 Sum_probs=43.8
Q ss_pred chHHHHHHHHhccccceecccc-ccccccccccccCCcccccceeecccCCcccCCChhHHHHHHHHHHCCCceee
Q 039466 33 NQYTLKENMEAFHGITFWPRIL-VDVCRIDISTSTLDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVL 107 (263)
Q Consensus 33 ~e~t~~~N~~af~~~~l~pr~L-~~v~~~d~st~~lG~~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~l 107 (263)
-|.+.+-...+++.+...|=.+ +...+.|++|+++|.++.-||++|. |.. .++|. .+...+.|..+++
T Consensus 9 ~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Gl~l~nPi~~As-G~~----~~~~~--~~~~~~~G~Gavv 77 (327)
T cd04738 9 PETAHRLAIRALKLGLGPPLLLLLVYDDPRLEVEVFGLTFPNPVGLAA-GFD----KNAEA--IDALLALGFGFVE 77 (327)
T ss_pred HHHHHHHHHHHHHhcCCCCCccccCCCCCCcceEECCEECCCCCEeCc-CCC----CCHHH--HHHHHHCCCcEEE
Confidence 4666666777777666655332 3567889999999999999998855 321 33432 3333356665543
No 76
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=97.21 E-value=0.0056 Score=58.46 Aligned_cols=41 Identities=24% Similarity=0.377 Sum_probs=29.9
Q ss_pred HHHHHHHhhcCCCEEEEec---CC-HHHHHHHHHcCCCEEEEcCC
Q 039466 206 KDIEWLRSITNLPILIKGV---LT-REDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 206 ~dl~~lr~~~~lPiilKGI---~s-~eDA~~a~~~G~dgI~VSNH 246 (263)
+-++++++.+++||++|== .+ .+-|+.+.++|+|||++.|.
T Consensus 158 ~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~Nt 202 (420)
T PRK08318 158 MYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGADAVSLINT 202 (420)
T ss_pred HHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEecc
Confidence 4578888889999999921 12 24456677899999997654
No 77
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.19 E-value=0.0022 Score=58.15 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=39.1
Q ss_pred CCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 203 LSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 203 ~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
..|+.++.+++..++|||.-| |.+++||.++++.|||+|.|.
T Consensus 218 ~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~ig 260 (296)
T cd04740 218 IALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVG 260 (296)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 467889999999999999999 999999999999999999985
No 78
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.18 E-value=0.014 Score=51.29 Aligned_cols=137 Identities=18% Similarity=0.174 Sum_probs=84.0
Q ss_pred HHHHHHHHHHCCCceeecCCCCccHHHHHHhcc---c-------cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchH
Q 039466 91 EVATARAAASCNTIMVLSFTSSCSIEEVAASCN---A-------AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRRE 160 (263)
Q Consensus 91 e~a~AraA~~~gi~~~lss~s~~sieeV~~~~~---~-------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~ 160 (263)
...+.+.++..++|..++- ..+++|++.+.-. . .++| +...+++++- |-..+++.+|... |+..
T Consensus 67 ~~~i~~i~~~~~~~v~vgG-Gir~~edv~~~l~~Ga~~viigt~~~~~-~~~~~~~~~~---~~~~iivslD~~~-~~~~ 140 (233)
T cd04723 67 DEAIRELAAAWPLGLWVDG-GIRSLENAQEWLKRGASRVIVGTETLPS-DDDEDRLAAL---GEQRLVLSLDFRG-GQLL 140 (233)
T ss_pred HHHHHHHHHhCCCCEEEec-CcCCHHHHHHHHHcCCCeEEEcceeccc-hHHHHHHHhc---CCCCeEEEEeccC-Ceec
Confidence 3355666777888988875 5578888765432 1 4556 6666655543 5457999999732 2211
Q ss_pred HHHhhhhhhh-hhhhh----hhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHH
Q 039466 161 ADIKNKMIAQ-QLKNL----EGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTREDAIKAV 234 (263)
Q Consensus 161 ~d~r~~~~~p-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~ 234 (263)
. ......+- -.+.+ ..+...++...+ .....+.+-++.+.+.+++||++=| |.|.+|++++.
T Consensus 141 ~-~~~~~~~~~~~~~~~~~~~~li~~di~~~G-----------~~~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~ 208 (233)
T cd04723 141 K-PTDFIGPEELLRRLAKWPEELIVLDIDRVG-----------SGQGPDLELLERLAARADIPVIAAGGVRSVEDLELLK 208 (233)
T ss_pred c-ccCcCCHHHHHHHHHHhCCeEEEEEcCccc-----------cCCCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHH
Confidence 0 00000000 00111 111111121100 0134577889999999999999999 99999999999
Q ss_pred HcCCCEEEEcC
Q 039466 235 EVGVAGIIVSN 245 (263)
Q Consensus 235 ~~G~dgI~VSN 245 (263)
+.|+++++|+.
T Consensus 209 ~~G~~~vivGs 219 (233)
T cd04723 209 KLGASGALVAS 219 (233)
T ss_pred HcCCCEEEEeh
Confidence 99999999965
No 79
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=97.18 E-value=0.0028 Score=56.95 Aligned_cols=200 Identities=15% Similarity=0.144 Sum_probs=105.0
Q ss_pred ccccccCCccchHHHHHHHHhccccceeccccccccccccccccCCcccccceeecccC---Ccc-cCC---ChhHHHHH
Q 039466 23 YYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTSTLDYKISASIIIAPTG---LHK-LAN---PEGEVATA 95 (263)
Q Consensus 23 ~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~~v~~~d~st~~lG~~~~~Pi~iaP~~---~~~-l~~---~~ge~a~A 95 (263)
.-.|+..|--+..|..+-..++.+- +++-+ =+|-++|=|+.=.|+= .++ |.+ .+.=..+.
T Consensus 17 li~yi~aG~P~~~~~~~~~~~l~~~--------Gad~i-----ElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~ 83 (263)
T CHL00200 17 LIPFITAGDPDIVITKKALKILDKK--------GADII-----ELGIPYSDPLADGPIIQEASNRALKQGINLNKILSIL 83 (263)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHC--------CCCEE-----EECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4478877776666555544444321 11111 1789999998888861 111 111 12222333
Q ss_pred HH-HHHCCCceeecCCCC----ccHHHHH----Hhccc--cccC--HHHHHHHHHHHHHcCCCEEEE-ccCCCCCcchHH
Q 039466 96 RA-AASCNTIMVLSFTSS----CSIEEVA----ASCNA--AYKK--RDMAATLVQRAERNGFMALVL-TADTPRLDRREA 161 (263)
Q Consensus 96 ra-A~~~gi~~~lss~s~----~sieeV~----~~~~~--~~~d--~~~~~~li~ra~~aG~~al~v-TvD~~~~g~R~~ 161 (263)
+. .++.++|.++=++.+ ..+|+.. +++-+ +..| .+...++++.+++.|...+.+ +-.++. .|-+
T Consensus 84 ~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~--eri~ 161 (263)
T CHL00200 84 SEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSK--SRIQ 161 (263)
T ss_pred HHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCH--HHHH
Confidence 33 344678866555554 2445433 22222 2222 255678888889999776543 444432 2322
Q ss_pred HHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCE
Q 039466 162 DIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAG 240 (263)
Q Consensus 162 d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dg 240 (263)
.+...- ..+... . ...+..+... .... ---+.++.+|+.+++||.+=+ |.++|+++.+.++|+||
T Consensus 162 ~i~~~a-----~gFIY~-v---S~~GvTG~~~----~~~~-~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADG 227 (263)
T CHL00200 162 KIARAA-----PGCIYL-V---STTGVTGLKT----ELDK-KLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNING 227 (263)
T ss_pred HHHHhC-----CCcEEE-E---cCCCCCCCCc----cccH-HHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCE
Confidence 221100 000000 0 0000000000 0000 012458999999999999833 99999999999999999
Q ss_pred EEEcCCCCCCC
Q 039466 241 IIVSNHGARQL 251 (263)
Q Consensus 241 I~VSNHGGRql 251 (263)
+||..+-=+.+
T Consensus 228 vVVGSalv~~i 238 (263)
T CHL00200 228 IVIGSACVQIL 238 (263)
T ss_pred EEECHHHHHHH
Confidence 99987653333
No 80
>PLN02591 tryptophan synthase
Probab=97.15 E-value=0.0032 Score=56.21 Aligned_cols=40 Identities=25% Similarity=0.423 Sum_probs=35.7
Q ss_pred HHHHHHhhcCCCEEE-EecCCHHHHHHHHHcCCCEEEEcCC
Q 039466 207 DIEWLRSITNLPILI-KGVLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 207 dl~~lr~~~~lPiil-KGI~s~eDA~~a~~~G~dgI~VSNH 246 (263)
.++.+|+.+++||++ =||.++||++++.++|+||++|..+
T Consensus 180 ~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSa 220 (250)
T PLN02591 180 LLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSA 220 (250)
T ss_pred HHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHH
Confidence 489999999999888 2389999999999999999999874
No 81
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=97.12 E-value=0.017 Score=52.12 Aligned_cols=155 Identities=12% Similarity=0.168 Sum_probs=91.9
Q ss_pred ccccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCCCCccHHHHH----Hhccc-cccCHHHHHHHHHHHHHcCC
Q 039466 70 KISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVA----ASCNA-AYKKRDMAATLVQRAERNGF 144 (263)
Q Consensus 70 ~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV~----~~~~~-~~~d~~~~~~li~ra~~aG~ 144 (263)
.++.||+ |..+..| ..=|++..++|+-++=.|....|.+++. ..... ++.|-.-..+ ..+|.+.||
T Consensus 63 ~V~iPVI----Gi~K~~~----~~Ea~~L~eaGvDiIDaT~r~rP~~~~~~~iK~~~~~l~MAD~stleE-al~a~~~Ga 133 (283)
T cd04727 63 AVSIPVM----AKVRIGH----FVEAQILEALGVDMIDESEVLTPADEEHHIDKHKFKVPFVCGARNLGE-ALRRISEGA 133 (283)
T ss_pred hCCCCeE----EeeehhH----HHHHHHHHHcCCCEEeccCCCCcHHHHHHHHHHHcCCcEEccCCCHHH-HHHHHHCCC
Confidence 4678876 4445444 6778888999998885555555666543 22211 5555544434 456678999
Q ss_pred CEEEEccCCCCCcchHHHHhhhhhhh-hhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEE--E
Q 039466 145 MALVLTADTPRLDRREADIKNKMIAQ-QLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPIL--I 221 (263)
Q Consensus 145 ~al~vTvD~~~~g~R~~d~r~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPii--l 221 (263)
+-|-=|.. ...|.=..-+++--.+- ..+.+. .+.+ ...+........+|+-|+.+++..++||| .
T Consensus 134 d~I~TTl~-gyT~~~~~~~~~~~~i~~~i~~~~-----gyt~------~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iA 201 (283)
T cd04727 134 AMIRTKGE-AGTGNVVEAVRHMRAVNGEIRKLQ-----SMSE------EELYAVAKEIQAPYELVKETAKLGRLPVVNFA 201 (283)
T ss_pred CEEEecCC-CCCCcHHHHHHHHHHHHHHHHHHh-----CCCH------HHHHhhhcccCCCHHHHHHHHHhcCCCeEEEE
Confidence 88877776 33343111111100000 001110 0000 00001111124689999999999999997 5
Q ss_pred Ee-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 222 KG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 222 KG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
-| |.++++|.++.++||+||+|++
T Consensus 202 eGGI~Tpena~~v~e~GAdgVaVGS 226 (283)
T cd04727 202 AGGVATPADAALMMQLGADGVFVGS 226 (283)
T ss_pred eCCCCCHHHHHHHHHcCCCEEEEcH
Confidence 55 9999999999999999999975
No 82
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=97.12 E-value=0.0077 Score=55.68 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=38.5
Q ss_pred CCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 203 LSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 203 ~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
..|+.+.++++..++|||.-| |.|++||.+.+.+||++|.|.
T Consensus 224 ~al~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ 266 (325)
T cd04739 224 LPLRWIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTT 266 (325)
T ss_pred HHHHHHHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEEe
Confidence 457778899999999999988 999999999999999999987
No 83
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.09 E-value=0.001 Score=61.20 Aligned_cols=93 Identities=22% Similarity=0.262 Sum_probs=66.5
Q ss_pred HHHHHHHHHHc---CCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHH
Q 039466 132 AATLVQRAERN---GFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDI 208 (263)
Q Consensus 132 ~~~li~ra~~a---G~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl 208 (263)
..+.+++|+.. ||..++++.|.++..+|-.++.--.-+| +. +.++. .-+-.+.+.|
T Consensus 183 ~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmP------------l~--------~pIGs-g~gv~~p~~i 241 (326)
T PRK11840 183 MVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMP------------LG--------APIGS-GLGIQNPYTI 241 (326)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEee------------cc--------ccccC-CCCCCCHHHH
Confidence 56778888877 9999999999988777665552100001 00 00100 1122277889
Q ss_pred HHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 209 EWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 209 ~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
+.+++..++|||+=+ |.+++||.+|.|.|+||+.|-.
T Consensus 242 ~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~nS 279 (326)
T PRK11840 242 RLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMNT 279 (326)
T ss_pred HHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcc
Confidence 999999999999876 9999999999999999997643
No 84
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=97.07 E-value=0.004 Score=56.70 Aligned_cols=43 Identities=21% Similarity=0.393 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 202 SLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
+..|+.++.+++..++|||.-| |.+++||.+++..|+|+|.|.
T Consensus 220 p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~ig 263 (301)
T PRK07259 220 PIALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVG 263 (301)
T ss_pred cccHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEc
Confidence 3578899999999999999988 999999999999999999874
No 85
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=97.04 E-value=0.021 Score=51.67 Aligned_cols=155 Identities=11% Similarity=0.146 Sum_probs=90.2
Q ss_pred ccccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCCCCccHHHHHH----hccc-cccCHHHHHHHHHHHHHcCC
Q 039466 70 KISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAA----SCNA-AYKKRDMAATLVQRAERNGF 144 (263)
Q Consensus 70 ~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~----~~~~-~~~d~~~~~~li~ra~~aG~ 144 (263)
.++.|++ |..+..| ..=|+...++|+-|+=-|...+|.++... .... ++.|-....+-+ |+.+.|+
T Consensus 65 ~V~iPVi----g~~kigh----~~Ea~~L~~~GvDiIDeTe~lrPade~~~~~K~~f~vpfmad~~~l~EAl-rai~~Ga 135 (287)
T TIGR00343 65 AVSIPVM----AKVRIGH----FVEAQILEALGVDYIDESEVLTPADWTFHIDKKKFKVPFVCGARDLGEAL-RRINEGA 135 (287)
T ss_pred hCCCCEE----EEeeccH----HHHHHHHHHcCCCEEEccCCCCcHHHHHHHHHHHcCCCEEccCCCHHHHH-HHHHCCC
Confidence 4678876 4455554 67788899999999865555567666432 2211 444444344434 4457888
Q ss_pred CEEEEccCCCCCcchHHHHhh--hhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEE--
Q 039466 145 MALVLTADTPRLDRREADIKN--KMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPIL-- 220 (263)
Q Consensus 145 ~al~vTvD~~~~g~R~~d~r~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPii-- 220 (263)
.-|-=|.. ...|+=-.-+|+ ++. ...+.+.. +. .-.+...........++-|+++++..++|||
T Consensus 136 dmI~Tt~e-~gTg~v~~av~hlr~~~-~~~~~~~~-----~~-----~~~~~~~~a~~~~~~~elLkei~~~~~iPVV~f 203 (287)
T TIGR00343 136 AMIRTKGE-AGTGNIVEAVRHMRKIN-EEIRQIQN-----ML-----EEEDLAAVAKELRVPVELLLEVLKLGKLPVVNF 203 (287)
T ss_pred CEEecccc-CCCccHHHHHHHHHHHH-HHHHHHhc-----cc-----chhHHhhhhcccCCCHHHHHHHHHhCCCCEEEe
Confidence 66655544 344442122221 010 00011100 00 0001111111123678999999999999998
Q ss_pred EEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 221 IKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 221 lKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
.=| |.|++||.++.++||+||+|++
T Consensus 204 AiGGI~TPedAa~~melGAdGVaVGS 229 (287)
T TIGR00343 204 AAGGVATPADAALMMQLGADGVFVGS 229 (287)
T ss_pred ccCCCCCHHHHHHHHHcCCCEEEEhH
Confidence 444 9999999999999999999975
No 86
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=97.01 E-value=0.0062 Score=54.52 Aligned_cols=196 Identities=16% Similarity=0.185 Sum_probs=109.6
Q ss_pred cccccccCCccchHHHHHHHHhccccceeccccccccccccccccCCcccccceeecccC-------C-cccCCChhHHH
Q 039466 22 MYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTSTLDYKISASIIIAPTG-------L-HKLANPEGEVA 93 (263)
Q Consensus 22 ~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~~v~~~d~st~~lG~~~~~Pi~iaP~~-------~-~~l~~~~ge~a 93 (263)
..-.|+..|--|-.|..+-..++.+- +++-+ =+|-++|=|+.=.|+= + +++ +.+.-..
T Consensus 11 ~li~y~~aG~P~~~~~~~~~~~l~~~--------Gad~i-----ElGiPfsDP~aDGpvIq~a~~~al~~G~-~~~~~~~ 76 (256)
T TIGR00262 11 AFIPFVTAGDPTLETSLEIIKTLIEA--------GADAL-----ELGVPFSDPLADGPTIQAADLRALRAGM-TPEKCFE 76 (256)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHc--------CCCEE-----EECCCCCCCCCcCHHHHHHHHHHHHcCC-CHHHHHH
Confidence 34578888877766665555554322 11111 1799999999888862 1 121 1234446
Q ss_pred HHHHHHH--CCCceeecCCCCc----cHHH----HHHhccc--cccC--HHHHHHHHHHHHHcCCCEE-EEccCCCCCcc
Q 039466 94 TARAAAS--CNTIMVLSFTSSC----SIEE----VAASCNA--AYKK--RDMAATLVQRAERNGFMAL-VLTADTPRLDR 158 (263)
Q Consensus 94 ~AraA~~--~gi~~~lss~s~~----siee----V~~~~~~--~~~d--~~~~~~li~ra~~aG~~al-~vTvD~~~~g~ 158 (263)
+.+..++ .++|..+=++.+. .+|+ .++++.+ +..| .+...++++++++.|.+.+ +++-.++. .
T Consensus 77 ~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~--e 154 (256)
T TIGR00262 77 LLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADD--E 154 (256)
T ss_pred HHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCH--H
Confidence 6666554 5777554333331 3343 3343332 2222 2456788999999999876 55555543 1
Q ss_pred hHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcC
Q 039466 159 READIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVG 237 (263)
Q Consensus 159 R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G 237 (263)
|-+.+...- ..+. ..... . +..+. ...+.+ -..+.++++|+.++.||++=| |.++|+++++.++|
T Consensus 155 ri~~i~~~~-----~gfi--y~vs~-~-G~TG~----~~~~~~-~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~G 220 (256)
T TIGR00262 155 RLKQIAEKS-----QGFV--YLVSR-A-GVTGA----RNRAAS-ALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAG 220 (256)
T ss_pred HHHHHHHhC-----CCCE--EEEEC-C-CCCCC----cccCCh-hHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcC
Confidence 211111000 0000 00000 0 00000 001111 145779999999999999976 99999999999999
Q ss_pred CCEEEEcCCC
Q 039466 238 VAGIIVSNHG 247 (263)
Q Consensus 238 ~dgI~VSNHG 247 (263)
+||++|.++=
T Consensus 221 ADgvVvGSai 230 (256)
T TIGR00262 221 ADGVIVGSAI 230 (256)
T ss_pred CCEEEECHHH
Confidence 9999998653
No 87
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.00 E-value=0.019 Score=50.80 Aligned_cols=139 Identities=22% Similarity=0.268 Sum_probs=92.0
Q ss_pred ChhHHHHHHHHHHCCCceeecCCCCccHHHHHHhcc-c---------cccCHHHHHHHHHHHHHcCCCEEEEccCCCC--
Q 039466 88 PEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCN-A---------AYKKRDMAATLVQRAERNGFMALVLTADTPR-- 155 (263)
Q Consensus 88 ~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~-~---------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~-- 155 (263)
+.-+..+.+.+++..++.-+| ....+.|++...-. + ..+|+++.+++++ +-| ..++|.+|+..
T Consensus 61 ~~n~~~i~~i~~~~~~~vQvG-GGIRs~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~---~~g-~rivv~lD~r~g~ 135 (241)
T COG0106 61 PRNLEAIKEILEATDVPVQVG-GGIRSLEDVEALLDAGVARVIIGTAAVKNPDLVKELCE---EYG-DRIVVALDARDGK 135 (241)
T ss_pred cccHHHHHHHHHhCCCCEEee-CCcCCHHHHHHHHHCCCCEEEEecceecCHHHHHHHHH---HcC-CcEEEEEEccCCc
Confidence 344457888888898888887 44577777654322 1 5688888777655 577 89999999755
Q ss_pred ---CcchHHHHhhhhhhhhhhhhhhc-----cccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCC
Q 039466 156 ---LDRREADIKNKMIAQQLKNLEGL-----LSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLT 226 (263)
Q Consensus 156 ---~g~R~~d~r~~~~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s 226 (263)
.||.|...-.-..+ .+.+... -..+++..+ .-...+|+-+++|.+.+++|||.-| |.|
T Consensus 136 vav~GW~e~s~~~~~~l--~~~~~~~g~~~ii~TdI~~DG-----------tl~G~n~~l~~~l~~~~~ipviaSGGv~s 202 (241)
T COG0106 136 VAVSGWQEDSGVELEEL--AKRLEEVGLAHILYTDISRDG-----------TLSGPNVDLVKELAEAVDIPVIASGGVSS 202 (241)
T ss_pred cccccccccccCCHHHH--HHHHHhcCCCeEEEEeccccc-----------ccCCCCHHHHHHHHHHhCcCEEEecCcCC
Confidence 36665433211111 1111110 000110000 0133589999999999999999999 999
Q ss_pred HHHHHHHHHc-CCCEEEEc
Q 039466 227 REDAIKAVEV-GVAGIIVS 244 (263)
Q Consensus 227 ~eDA~~a~~~-G~dgI~VS 244 (263)
.+|.+.+.+. |+.|++|.
T Consensus 203 ~~Di~~l~~~~G~~GvIvG 221 (241)
T COG0106 203 LDDIKALKELSGVEGVIVG 221 (241)
T ss_pred HHHHHHHHhcCCCcEEEEe
Confidence 9999999999 99999984
No 88
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=96.95 E-value=0.0053 Score=53.97 Aligned_cols=124 Identities=19% Similarity=0.232 Sum_probs=68.7
Q ss_pred HHHHHHHHCCCceeecCCCCccHHHHHHhccccccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhh
Q 039466 93 ATARAAASCNTIMVLSFTSSCSIEEVAASCNAAYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQL 172 (263)
Q Consensus 93 a~AraA~~~gi~~~lss~s~~sieeV~~~~~~~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~ 172 (263)
.+|+-|++++---++ -+|=|-... .++.|.-.+.+-.+...+-||..+.-+-|-++..+|-.|.--..-+|
T Consensus 80 ~~A~laRe~~~t~wI------KLEVi~D~~-~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~GcaavMP-- 150 (247)
T PF05690_consen 80 RTARLAREAFGTNWI------KLEVIGDDK-TLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAGCAAVMP-- 150 (247)
T ss_dssp HHHHHHHHTTS-SEE------EE--BS-TT-T--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEE--
T ss_pred HHHHHHHHHcCCCeE------EEEEeCCCC-CcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCCCCEEEe--
Confidence 688888886522221 222111100 05566655555555555789999998888777655544432111111
Q ss_pred hhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 173 KNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
+ . .+.+ + ..+-.+...|+.|+++.++|||+-+ |-++.||.+|.|.|+|||.|-
T Consensus 151 -----l-g---sPIG-S---------g~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvN 204 (247)
T PF05690_consen 151 -----L-G---SPIG-S---------GRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVN 204 (247)
T ss_dssp -----B-S---SSTT-T------------SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEES
T ss_pred -----c-c---cccc-c---------CcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehh
Confidence 0 0 0000 0 1133467889999999999999986 999999999999999999873
No 89
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=96.95 E-value=0.0069 Score=52.77 Aligned_cols=44 Identities=20% Similarity=0.440 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 202 SLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
..+|+.++.+++.+++|+++.| |.++|||+++++.|||.|+|..
T Consensus 59 ~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs 103 (234)
T cd04732 59 PVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGT 103 (234)
T ss_pred CCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECc
Confidence 4578999999999999999999 9999999999999999998754
No 90
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=96.94 E-value=0.028 Score=50.96 Aligned_cols=154 Identities=10% Similarity=0.143 Sum_probs=90.6
Q ss_pred ccccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCCCCccHHHHH----Hhccc-cccCHHHHHHHHHHHHHcCC
Q 039466 70 KISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVA----ASCNA-AYKKRDMAATLVQRAERNGF 144 (263)
Q Consensus 70 ~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV~----~~~~~-~~~d~~~~~~li~ra~~aG~ 144 (263)
.++.||+ +..+..| ..=|++..++|+-|+=.|..-+|..+.. ..... ++.|-.-..+- .|+.+.|+
T Consensus 72 ~V~iPVi----gk~Righ----~~Ea~~L~~~GvDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EA-lrai~~Ga 142 (293)
T PRK04180 72 AVSIPVM----AKARIGH----FVEAQILEALGVDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEA-LRRIAEGA 142 (293)
T ss_pred hCCCCeE----EeehhhH----HHHHHHHHHcCCCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHH-HHHHHCCC
Confidence 3567765 3444444 7778889999999985555556655543 22211 44444434443 34557887
Q ss_pred CEEEEccCCCCCcchHHHHhhhhhhh-hhhhhhhccccCCCCCCCccHHHHHHH-hcCCCCCHHHHHHHHhhcCCCEE--
Q 039466 145 MALVLTADTPRLDRREADIKNKMIAQ-QLKNLEGLLSTKVTSDTGSNLEAYAKE-TMDPSLSWKDIEWLRSITNLPIL-- 220 (263)
Q Consensus 145 ~al~vTvD~~~~g~R~~d~r~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~W~dl~~lr~~~~lPii-- 220 (263)
.-|-=|=. +..|+=-.-+|+--.+- ..+.+. .+. .+.... ......+|+-|+++++..++|||
T Consensus 143 dmI~Ttge-~gtg~v~~av~h~r~~~~~i~~L~-----gyt-------~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~ 209 (293)
T PRK04180 143 AMIRTKGE-AGTGNVVEAVRHMRQINGEIRRLT-----SMS-------EDELYTAAKELQAPYELVKEVAELGRLPVVNF 209 (293)
T ss_pred CeeeccCC-CCCccHHHHHHHHHHHHHHHHHHh-----CCC-------HHHHHhhccccCCCHHHHHHHHHhCCCCEEEE
Confidence 65554433 34455444333311110 111111 010 011111 11134689999999999999997
Q ss_pred EEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 221 IKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 221 lKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
.-| |.+++||.++.++||+||+|++
T Consensus 210 AeGGI~TPedaa~vme~GAdgVaVGS 235 (293)
T PRK04180 210 AAGGIATPADAALMMQLGADGVFVGS 235 (293)
T ss_pred EeCCCCCHHHHHHHHHhCCCEEEEcH
Confidence 666 9999999999999999999975
No 91
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=96.92 E-value=0.0043 Score=53.88 Aligned_cols=43 Identities=26% Similarity=0.516 Sum_probs=39.6
Q ss_pred CCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 203 LSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 203 ~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
.+|+.++.+++..++||++=| |.+++|+.++++.|+|||+|+.
T Consensus 164 ~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~vGs 207 (219)
T cd04729 164 PDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVVGS 207 (219)
T ss_pred CCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEEch
Confidence 478999999999999999988 9999999999999999999864
No 92
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=96.90 E-value=0.0096 Score=51.73 Aligned_cols=42 Identities=26% Similarity=0.424 Sum_probs=38.5
Q ss_pred CCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 203 LSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 203 ~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
.+++.++++++.+++||+.=| |.+++|+.++.++|+|||+|+
T Consensus 160 ~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 160 PDFALLKELLKAVGCPVIAEGRINTPEQAKKALELGAHAVVVG 202 (221)
T ss_pred cCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEEEc
Confidence 357889999999999999987 899999999999999999987
No 93
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=96.90 E-value=0.0043 Score=55.14 Aligned_cols=97 Identities=15% Similarity=0.255 Sum_probs=67.0
Q ss_pred cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHh--cCCC
Q 039466 125 AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKET--MDPS 202 (263)
Q Consensus 125 ~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 202 (263)
++.|.-.+.+-.+...+-||..+.-+.|-|+..+|-.|.--..-+| + .++. ..+-
T Consensus 119 LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed~Gc~aVMP------------l-----------gsPIGSg~Gl 175 (267)
T CHL00162 119 LLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAKHLEDIGCATVMP------------L-----------GSPIGSGQGL 175 (267)
T ss_pred cCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHcCCeEEee------------c-----------cCcccCCCCC
Confidence 4556655555555555789999998888877666554442111111 0 0011 1133
Q ss_pred CCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 203 LSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 203 ~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
.+...|+-|+++.++|||+=+ |.+++||.+|.|.|+||+.|-
T Consensus 176 ~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~n 218 (267)
T CHL00162 176 QNLLNLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLLN 218 (267)
T ss_pred CCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEeec
Confidence 477899999999999999876 999999999999999999764
No 94
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=96.86 E-value=0.0037 Score=56.03 Aligned_cols=83 Identities=18% Similarity=0.238 Sum_probs=63.3
Q ss_pred HHHHhccc--cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHH
Q 039466 117 EVAASCNA--AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAY 194 (263)
Q Consensus 117 eV~~~~~~--~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 194 (263)
||..+.|. ++.......++.+..+.+|+.+|-|-.|...
T Consensus 55 eik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~--------------------------------------- 95 (260)
T PRK00278 55 EVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERF--------------------------------------- 95 (260)
T ss_pred EeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEeccccc---------------------------------------
Confidence 34444442 4444445667788888999999988777432
Q ss_pred HHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 195 AKETMDPSLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 195 ~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
+.+ ++++|..+|+.+++||+.|- |.++-.+..+.++|||+|-+-
T Consensus 96 ----f~g--~~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi 140 (260)
T PRK00278 96 ----FQG--SLEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAGADAILLI 140 (260)
T ss_pred ----CCC--CHHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcCCCEEEEE
Confidence 112 36899999999999999999 789999999999999999764
No 95
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=96.86 E-value=0.017 Score=53.58 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=38.2
Q ss_pred CHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 204 SWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
.|+.+..+++..++|||.-| |.|++||.+++.+||++|.|+.
T Consensus 227 al~~v~~~~~~~~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t 269 (334)
T PRK07565 227 PLRWIAILSGRVGADLAATTGVHDAEDVIKMLLAGADVVMIAS 269 (334)
T ss_pred HHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHcCCCceeeeh
Confidence 56778888888999999998 9999999999999999999873
No 96
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=96.81 E-value=0.0033 Score=60.02 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=40.1
Q ss_pred CCHHHHHHHHhhc---CCCEEEEe-cCCHHHHHHHHHcCCCEEEEcCC
Q 039466 203 LSWKDIEWLRSIT---NLPILIKG-VLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 203 ~~W~dl~~lr~~~---~lPiilKG-I~s~eDA~~a~~~G~dgI~VSNH 246 (263)
..|+.|.++++.. ++|||.-| |.|++||.+.+.+||++|.|...
T Consensus 237 ~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta 284 (420)
T PRK08318 237 IALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTA 284 (420)
T ss_pred HHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeee
Confidence 4799999999987 79999998 99999999999999999998654
No 97
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=96.79 E-value=0.0086 Score=56.32 Aligned_cols=90 Identities=18% Similarity=0.241 Sum_probs=63.6
Q ss_pred HHHHHHhccc--cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHH
Q 039466 115 IEEVAASCNA--AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLE 192 (263)
Q Consensus 115 ieeV~~~~~~--~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 192 (263)
++++++..+. +.|-.. ..+.++++.++|+++|+|+.=- .|.
T Consensus 220 i~~l~~~~~~PvivKGv~-~~eda~~a~~~Gvd~I~VS~HG----Grq-------------------------------- 262 (367)
T TIGR02708 220 IEEIAGYSGLPVYVKGPQ-CPEDADRALKAGASGIWVTNHG----GRQ-------------------------------- 262 (367)
T ss_pred HHHHHHhcCCCEEEeCCC-CHHHHHHHHHcCcCEEEECCcC----ccC--------------------------------
Confidence 4445444432 334221 2466788889999998876542 110
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhcC--CCEEEEe-cCCHHHHHHHHHcCCCEEEEcCC
Q 039466 193 AYAKETMDPSLSWKDIEWLRSITN--LPILIKG-VLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 193 ~~~~~~~~~~~~W~dl~~lr~~~~--lPiilKG-I~s~eDA~~a~~~G~dgI~VSNH 246 (263)
......+|+.|.++++..+ +|||+-| |.+..|+.+|+.+|||+|.|+..
T Consensus 263 -----~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~ 314 (367)
T TIGR02708 263 -----LDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRP 314 (367)
T ss_pred -----CCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHH
Confidence 0113346899999998764 9999999 99999999999999999999753
No 98
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=96.75 E-value=0.011 Score=51.48 Aligned_cols=43 Identities=23% Similarity=0.424 Sum_probs=39.4
Q ss_pred CCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 203 LSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 203 ~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
.+.+.++.+++.+++||.++| |-+.||++++.+.|++.|+++.
T Consensus 59 ~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs 102 (230)
T TIGR00007 59 VNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGT 102 (230)
T ss_pred CcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECh
Confidence 367789999999999999998 9999999999999999999874
No 99
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=96.71 E-value=0.13 Score=44.53 Aligned_cols=87 Identities=18% Similarity=0.291 Sum_probs=63.1
Q ss_pred cHHHHHHhccccccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHH
Q 039466 114 SIEEVAASCNAAYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEA 193 (263)
Q Consensus 114 sieeV~~~~~~~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 193 (263)
+...|.++.+-+..+++........|+..|++-+.+ .|.. |+
T Consensus 118 ~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~L-e~~s-----------Ga-------------------------- 159 (205)
T TIGR01769 118 AVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYL-EAGS-----------GA-------------------------- 159 (205)
T ss_pred ceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEE-EcCC-----------CC--------------------------
Confidence 444444333213456777778788888999988776 2211 00
Q ss_pred HHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 194 YAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 194 ~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
....+.+.++.+|+.+++|+++=| |-++|+|+.+++.|+|+|+|+
T Consensus 160 ------~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 160 ------SYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred ------CCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 012346789999999999999988 999999999999999999984
No 100
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.70 E-value=0.019 Score=53.10 Aligned_cols=117 Identities=12% Similarity=0.112 Sum_probs=71.5
Q ss_pred HHHHHHHHHHCCCcee-ecCC-CCc-----cHHHHHHhccc--c-ccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchH
Q 039466 91 EVATARAAASCNTIMV-LSFT-SSC-----SIEEVAASCNA--A-YKKRDMAATLVQRAERNGFMALVLTADTPRLDRRE 160 (263)
Q Consensus 91 e~a~AraA~~~gi~~~-lss~-s~~-----sieeV~~~~~~--~-~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~ 160 (263)
....++++.++|+.++ +++. ... .++++++..|+ + ..+- .+.+..+.+.++|+++|+|++= |....+.
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v-~t~~~A~~l~~aGaD~I~vg~g-~G~~~~t 172 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNV-VTAEAARDLIDAGADGVKVGIG-PGSICTT 172 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCC-CCHHHHHHHHhcCCCEEEECCC-CCcCccc
Confidence 4567778888898875 3332 111 24455555553 2 2232 3445567778899999998652 1110000
Q ss_pred HHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHh---hcCCCEEEEe-cCCHHHHHHHHHc
Q 039466 161 ADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRS---ITNLPILIKG-VLTREDAIKAVEV 236 (263)
Q Consensus 161 ~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~---~~~lPiilKG-I~s~eDA~~a~~~ 236 (263)
+.. ..-...+|.-|.++++ ..++|||.-| |.++.|+.+|+.+
T Consensus 173 ~~~----------------------------------~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~ 218 (325)
T cd00381 173 RIV----------------------------------TGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAA 218 (325)
T ss_pred cee----------------------------------CCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHc
Confidence 000 0112235555555544 4579999988 9999999999999
Q ss_pred CCCEEEE
Q 039466 237 GVAGIIV 243 (263)
Q Consensus 237 G~dgI~V 243 (263)
|++++++
T Consensus 219 GA~~Vmi 225 (325)
T cd00381 219 GADAVML 225 (325)
T ss_pred CCCEEEe
Confidence 9999998
No 101
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=96.69 E-value=0.0061 Score=54.25 Aligned_cols=40 Identities=25% Similarity=0.403 Sum_probs=37.8
Q ss_pred CHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEE
Q 039466 204 SWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIV 243 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~V 243 (263)
++++|+.+|+.+++||+-|+ |.++.....|..+|||+|.+
T Consensus 90 s~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLL 130 (247)
T PRK13957 90 SLEDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILL 130 (247)
T ss_pred CHHHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEe
Confidence 67999999999999999999 89999999999999999975
No 102
>PRK07695 transcriptional regulator TenI; Provisional
Probab=96.67 E-value=0.026 Score=48.33 Aligned_cols=43 Identities=21% Similarity=0.436 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 202 SLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
...|+.++++++..++||+.=| | +++++..+.+.|++||.|+.
T Consensus 135 ~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~~Ga~gvav~s 178 (201)
T PRK07695 135 ARGLEELSDIARALSIPVIAIGGI-TPENTRDVLAAGVSGIAVMS 178 (201)
T ss_pred CCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEEEEEH
Confidence 4579999999999999999999 7 99999999999999997753
No 103
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=96.66 E-value=0.016 Score=50.94 Aligned_cols=98 Identities=18% Similarity=0.275 Sum_probs=67.2
Q ss_pred cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCC-CCCCccHHHHHHHhcCCCC
Q 039466 125 AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVT-SDTGSNLEAYAKETMDPSL 203 (263)
Q Consensus 125 ~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 203 (263)
++.|.-.+.+-.+...+-||..+.-|-|-|+..+|-.|.--.--+| +. +.+ -.-+-.
T Consensus 112 LlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~GcaavMP------------l~aPIG----------Sg~G~~ 169 (262)
T COG2022 112 LLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEAGCAAVMP------------LGAPIG----------SGLGLQ 169 (262)
T ss_pred cCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhcCceEecc------------cccccc----------CCcCcC
Confidence 4556544444445555789999999999888766655542111122 00 000 011334
Q ss_pred CHHHHHHHHhhcCCCEEEE-ecCCHHHHHHHHHcCCCEEEEc
Q 039466 204 SWKDIEWLRSITNLPILIK-GVLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilK-GI~s~eDA~~a~~~G~dgI~VS 244 (263)
+-..|+-|+++.++||||- ||-++.||..|.|.|+|||.+-
T Consensus 170 n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~N 211 (262)
T COG2022 170 NPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLN 211 (262)
T ss_pred CHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeehh
Confidence 6678999999999999997 5999999999999999999763
No 104
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.64 E-value=0.021 Score=51.90 Aligned_cols=143 Identities=15% Similarity=0.184 Sum_probs=82.3
Q ss_pred HHHHHHCCCceeecCCCCccHHHHHHhcc-c-----------cc-cCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHH
Q 039466 95 ARAAASCNTIMVLSFTSSCSIEEVAASCN-A-----------AY-KKRDMAATLVQRAERNGFMALVLTADTPRLDRREA 161 (263)
Q Consensus 95 AraA~~~gi~~~lss~s~~sieeV~~~~~-~-----------~~-~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~ 161 (263)
-..|++.++|.+|----..++|.|.++-. | .+ .|-+.+++.++.|++.|... -.-.-..|..+.
T Consensus 67 ~~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~V---EaElG~vgg~ed 143 (283)
T PRK07998 67 KRHADKMDVPVSLHLDHGKTFEDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPV---EAELGAILGKED 143 (283)
T ss_pred HHHHHHCCCCEEEECcCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE---EEEeccCCCccc
Confidence 34566788888887665667777765532 2 22 45567888888888877531 111111111111
Q ss_pred HH---hhhhhhh-hhhhhhh-ccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEec--CCHHHHHHHH
Q 039466 162 DI---KNKMIAQ-QLKNLEG-LLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGV--LTREDAIKAV 234 (263)
Q Consensus 162 d~---r~~~~~p-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKGI--~s~eDA~~a~ 234 (263)
+. ...+.-| ....+.. ..-.-+.-..++.++.|. .|.++|+-|+.|++.+++|+++-|- .+.|+.++|+
T Consensus 144 ~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~----~p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai 219 (283)
T PRK07998 144 DHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLED----IPRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSFV 219 (283)
T ss_pred cccccccccCCHHHHHHHHHHhCcCeeehhccccccCCC----CCCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHH
Confidence 00 0112222 1111110 000001111122233331 2778999999999999999999997 6889999999
Q ss_pred HcCCCEEEEc
Q 039466 235 EVGVAGIIVS 244 (263)
Q Consensus 235 ~~G~dgI~VS 244 (263)
++|+..|-|+
T Consensus 220 ~~Gi~KiNi~ 229 (283)
T PRK07998 220 NYKVAKVNIA 229 (283)
T ss_pred HcCCcEEEEC
Confidence 9999999775
No 105
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=96.55 E-value=0.038 Score=51.39 Aligned_cols=40 Identities=30% Similarity=0.484 Sum_probs=29.6
Q ss_pred HHHHHHhhcC-------CCEEEEec--CC----HHHHHHHHHcCCCEEEEcCC
Q 039466 207 DIEWLRSITN-------LPILIKGV--LT----REDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 207 dl~~lr~~~~-------lPiilKGI--~s----~eDA~~a~~~G~dgI~VSNH 246 (263)
-++++++.++ +||++|== .+ .+-|+.+.++|+|||++.|.
T Consensus 194 i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT 246 (335)
T TIGR01036 194 LLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNT 246 (335)
T ss_pred HHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECC
Confidence 4778887776 99999931 23 33345577899999999994
No 106
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=96.54 E-value=0.01 Score=57.08 Aligned_cols=147 Identities=14% Similarity=0.237 Sum_probs=91.0
Q ss_pred ChhHHHHHHHHHH-CCCceeecCCCCccHHHHHHhccc--cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHh
Q 039466 88 PEGEVATARAAAS-CNTIMVLSFTSSCSIEEVAASCNA--AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIK 164 (263)
Q Consensus 88 ~~ge~a~AraA~~-~gi~~~lss~s~~sieeV~~~~~~--~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r 164 (263)
|+-.-..|+.-.+ +. .-.+.-+..|||.=|-+.++| ++.++..+...++-.. +-...|.+||.... |.-+..-.
T Consensus 331 pdt~~kaaq~i~e~~~-VDFIDlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~-~vs~~iPiTVKiRT-G~keg~~~ 407 (614)
T KOG2333|consen 331 PDTAAKAAQVIAETCD-VDFIDLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMN-AVSGDIPITVKIRT-GTKEGHPV 407 (614)
T ss_pred hHHHHHHHHHHHhhcc-eeeeeccCCCChheeeccCCcchhhcCcHHHHHHHHHHH-HhccCCCeEEEEec-ccccCchh
Confidence 3333344444333 44 455777888999988888776 7888888877776553 33346788998643 33221111
Q ss_pred hhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcC--CCEEEEe-cCCHHH-HHHHHHcC-CC
Q 039466 165 NKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITN--LPILIKG-VLTRED-AIKAVEVG-VA 239 (263)
Q Consensus 165 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~--lPiilKG-I~s~eD-A~~a~~~G-~d 239 (263)
..--+|.+.| +....-..-+++-..+.+....+|++|.++.+..+ +|||..| |+|.|| .+.+-+.+ ++
T Consensus 408 a~~Li~~i~n-------ewg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~ 480 (614)
T KOG2333|consen 408 AHELIPRIVN-------EWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNPNVD 480 (614)
T ss_pred HHHHHHHHhh-------ccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEecCccccHHHHHHHhhcCCCcc
Confidence 0000111111 01001112234555566778889999999998754 8999999 999999 66666666 99
Q ss_pred EEEEc
Q 039466 240 GIIVS 244 (263)
Q Consensus 240 gI~VS 244 (263)
+|+|.
T Consensus 481 svMIa 485 (614)
T KOG2333|consen 481 SVMIA 485 (614)
T ss_pred eEEee
Confidence 99985
No 107
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.51 E-value=0.055 Score=50.61 Aligned_cols=154 Identities=14% Similarity=0.188 Sum_probs=83.1
Q ss_pred CcccCCChhHHHHHHHHHHCCCceeecCCCCccHHHHHHhccc-cccCHH-HHHHHHHHHHHcCCCEEEEccCCCCCcch
Q 039466 82 LHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNA-AYKKRD-MAATLVQRAERNGFMALVLTADTPRLDRR 159 (263)
Q Consensus 82 ~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~-~~~d~~-~~~~li~ra~~aG~~al~vTvD~~~~g~R 159 (263)
++++. .+|=..+.+++++.|++++..-.....++.+.+..+- ...-+. ....|++.+.+.|- .|-+.....+ -
T Consensus 146 f~G~g-~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~~d~lqIga~~~~n~~LL~~va~t~k---PVllk~G~~~-t 220 (352)
T PRK13396 146 FQGHG-ESALELLAAAREATGLGIITEVMDAADLEKIAEVADVIQVGARNMQNFSLLKKVGAQDK---PVLLKRGMAA-T 220 (352)
T ss_pred cCCch-HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhhCCeEEECcccccCHHHHHHHHccCC---eEEEeCCCCC-C
Confidence 34443 3344477888888888887777777777777665331 111111 12566776666552 3333433321 1
Q ss_pred HHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEE-----ec--CCHHHHHH
Q 039466 160 EADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIK-----GV--LTREDAIK 232 (263)
Q Consensus 160 ~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilK-----GI--~s~eDA~~ 232 (263)
..++.+.... +.... ..++-- -.-+...+.+.+....++|..|..+++.+++|||+- |- +.+.-++.
T Consensus 221 ~ee~~~A~e~--i~~~G---n~~viL-~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~DpsH~~G~sd~~~~~a~A 294 (352)
T PRK13396 221 IDEWLMAAEY--ILAAG---NPNVIL-CERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMIDPSHGTGKSEYVPSMAMA 294 (352)
T ss_pred HHHHHHHHHH--HHHcC---CCeEEE-EecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEECCcccCCcHHHHHHHHHH
Confidence 1222221110 00000 000000 000000011112245679999999999999999887 53 46678889
Q ss_pred HHHcCCCEEEEcCC
Q 039466 233 AVEVGVAGIIVSNH 246 (263)
Q Consensus 233 a~~~G~dgI~VSNH 246 (263)
|+.+|+||+++=-|
T Consensus 295 Ava~GAdGliIE~H 308 (352)
T PRK13396 295 AIAAGTDSLMIEVH 308 (352)
T ss_pred HHhhCCCeEEEEec
Confidence 99999999999777
No 108
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=96.47 E-value=0.0035 Score=53.43 Aligned_cols=42 Identities=26% Similarity=0.502 Sum_probs=34.7
Q ss_pred CCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 203 LSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 203 ~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
.+|+-++.|++. +.|||.-| |-+||+|++|+++|+.+|+|.+
T Consensus 132 pD~~lv~~l~~~-~~pvIaEGri~tpe~a~~al~~GA~aVVVGs 174 (192)
T PF04131_consen 132 PDFELVRELVQA-DVPVIAEGRIHTPEQAAKALELGAHAVVVGS 174 (192)
T ss_dssp HHHHHHHHHHHT-TSEEEEESS--SHHHHHHHHHTT-SEEEE-H
T ss_pred CCHHHHHHHHhC-CCcEeecCCCCCHHHHHHHHhcCCeEEEECc
Confidence 467889999986 99999999 9999999999999999999964
No 109
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.45 E-value=0.019 Score=53.15 Aligned_cols=43 Identities=21% Similarity=0.570 Sum_probs=38.7
Q ss_pred CCHH--HHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 203 LSWK--DIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 203 ~~W~--dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
.+|. .++.+++..+.|||.-| |.++.|+.+|+..||+++++++
T Consensus 186 ~~w~l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~ 231 (326)
T PRK05458 186 GGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGATMVMIGS 231 (326)
T ss_pred CccHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhCCCEEEech
Confidence 3565 58999998999999999 9999999999999999999974
No 110
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=96.44 E-value=0.0076 Score=52.86 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHhhc-CCCEEEEe-cCCHHHHHHHHHcCCCEEEEcCCCC
Q 039466 202 SLSWKDIEWLRSIT-NLPILIKG-VLTREDAIKAVEVGVAGIIVSNHGA 248 (263)
Q Consensus 202 ~~~W~dl~~lr~~~-~lPiilKG-I~s~eDA~~a~~~G~dgI~VSNHGG 248 (263)
..+++.++.+|+.+ ++||++=| |-++|+|+.++++|+|+|+|+|.-=
T Consensus 164 ~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~ 212 (223)
T TIGR01768 164 PVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIE 212 (223)
T ss_pred CcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHh
Confidence 45689999999998 99998866 9999999999999999999998643
No 111
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=96.41 E-value=0.0085 Score=56.34 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=31.3
Q ss_pred ccccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCCC
Q 039466 70 KISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTS 111 (263)
Q Consensus 70 ~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s 111 (263)
+++.||+|+.|++..+. ++.-.++|+++..+|+.+..|-..
T Consensus 63 ~l~~p~~is~MS~GaLS-~~a~~Ala~ga~~~G~~~ntGEGg 103 (368)
T PF01645_consen 63 ELSIPFMISAMSYGALS-EEAKEALAKGANMAGTASNTGEGG 103 (368)
T ss_dssp HHHTTEEEEEB-CTTC--HHHHHHHHHHHHHCT-EEEETTT-
T ss_pred hheeeeecccCChhhcC-HHHHHHHHHHHHHhCceEecCCCC
Confidence 36899999999998875 677889999999999877766543
No 112
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=96.41 E-value=0.12 Score=47.17 Aligned_cols=143 Identities=15% Similarity=0.277 Sum_probs=83.9
Q ss_pred HHHHHCCCceeecCCCCccHHHHHHhcc-c------------cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHH
Q 039466 96 RAAASCNTIMVLSFTSSCSIEEVAASCN-A------------AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREAD 162 (263)
Q Consensus 96 raA~~~gi~~~lss~s~~sieeV~~~~~-~------------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d 162 (263)
..|++.++|.+|---=..++|.|.++-. | +-.|-..+++.++.|++.|+.. -.-.-..|.-+.+
T Consensus 68 ~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~V---EaElG~igg~ed~ 144 (286)
T PRK12738 68 AYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSV---EAELGRLGGVEDD 144 (286)
T ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeE---EEEEEeeCCccCC
Confidence 3466788999987666668888876543 2 2235567889999998877432 1111111111111
Q ss_pred -----Hhhhhhhh-hhhhhhh-ccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEec--CCHHHHHHH
Q 039466 163 -----IKNKMIAQ-QLKNLEG-LLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGV--LTREDAIKA 233 (263)
Q Consensus 163 -----~r~~~~~p-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKGI--~s~eDA~~a 233 (263)
...-|+-| ....|.. ..-.-+....++.++.|. ..|.++|+.|++|++.+++|+++=|- ...|+-++|
T Consensus 145 ~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~---~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~ka 221 (286)
T PRK12738 145 MSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYS---KTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRT 221 (286)
T ss_pred cccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCC---CCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHH
Confidence 00113333 1122210 000001111122333332 24789999999999999999999996 678999999
Q ss_pred HHcCCCEEEEc
Q 039466 234 VEVGVAGIIVS 244 (263)
Q Consensus 234 ~~~G~dgI~VS 244 (263)
++.|+.=|=|+
T Consensus 222 i~~GI~KiNi~ 232 (286)
T PRK12738 222 IELGVTKVNVA 232 (286)
T ss_pred HHcCCeEEEeC
Confidence 99999877554
No 113
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=96.37 E-value=0.096 Score=49.24 Aligned_cols=145 Identities=13% Similarity=0.133 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHCCCceeecCCCCccHHHHHHhccc-cccCHH-HHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhh
Q 039466 89 EGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNA-AYKKRD-MAATLVQRAERNGFMALVLTADTPRLDRREADIKNK 166 (263)
Q Consensus 89 ~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~-~~~d~~-~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~ 166 (263)
++-..+.+.|.+.|++++.+-....+++.+.+..+- ...-+. ....+++.+.+.|- .|-+.+... --..|+.+.
T Consensus 169 e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~vd~lkI~s~~~~n~~LL~~~a~~gk---PVilk~G~~-~t~~e~~~A 244 (360)
T PRK12595 169 EGLKILKQVADEYGLAVISEIVNPADVEVALDYVDVIQIGARNMQNFELLKAAGRVNK---PVLLKRGLS-ATIEEFIYA 244 (360)
T ss_pred HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHhCCeEEECcccccCHHHHHHHHccCC---cEEEeCCCC-CCHHHHHHH
Confidence 455578888888888888777777777777766331 111111 12466777666553 333333221 112233222
Q ss_pred hhhhhhhhhhhccccCCCCCCCccHHHHHHHh---cCCCCCHHHHHHHHhhcCCCEEEE-e-cC-----CHHHHHHHHHc
Q 039466 167 MIAQQLKNLEGLLSTKVTSDTGSNLEAYAKET---MDPSLSWKDIEWLRSITNLPILIK-G-VL-----TREDAIKAVEV 236 (263)
Q Consensus 167 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~W~dl~~lr~~~~lPiilK-G-I~-----s~eDA~~a~~~ 236 (263)
... +.... ..++- -..+..+.. ....++|..|..+++.+++||++- . .. -+.-++.|+.+
T Consensus 245 ve~--i~~~G---n~~i~-----L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs~G~r~~~~~~a~aAva~ 314 (360)
T PRK12595 245 AEY--IMSQG---NGQII-----LCERGIRTYEKATRNTLDISAVPILKQETHLPVMVDVTHSTGRRDLLLPTAKAALAI 314 (360)
T ss_pred HHH--HHHCC---CCCEE-----EECCccCCCCCCCCCCcCHHHHHHHHHHhCCCEEEeCCCCCcchhhHHHHHHHHHHc
Confidence 110 00000 00000 000011111 123478999999999999999982 2 12 24467778999
Q ss_pred CCCEEEEcCCC
Q 039466 237 GVAGIIVSNHG 247 (263)
Q Consensus 237 G~dgI~VSNHG 247 (263)
||||+++=-|=
T Consensus 315 GAdg~~iE~H~ 325 (360)
T PRK12595 315 GADGVMAEVHP 325 (360)
T ss_pred CCCeEEEEecC
Confidence 99999998885
No 114
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=96.35 E-value=0.1 Score=45.08 Aligned_cols=41 Identities=24% Similarity=0.444 Sum_probs=36.5
Q ss_pred CHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 204 SWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
+++-++.+.+ .+.++|.-| +-||+.|++|.++||++|+|.+
T Consensus 169 Df~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGs 210 (229)
T COG3010 169 DFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGS 210 (229)
T ss_pred cHHHHHHHHh-CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECc
Confidence 5566777777 899999999 8999999999999999999975
No 115
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=96.34 E-value=0.031 Score=49.21 Aligned_cols=44 Identities=16% Similarity=0.300 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 202 SLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
..+|+.++.+++..++||++-| |.|.+|++.+.+.|+++|+|+.
T Consensus 57 ~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~ 101 (243)
T cd04731 57 ETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINS 101 (243)
T ss_pred cccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECc
Confidence 3478899999999999999999 9999999999999999999863
No 116
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=96.29 E-value=0.03 Score=49.74 Aligned_cols=45 Identities=16% Similarity=0.297 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcCC
Q 039466 202 SLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSNH 246 (263)
..+|+.++.+++..++||++=| |.|.+|++++++.||++|+++..
T Consensus 60 ~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~ 105 (253)
T PRK02083 60 DTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSA 105 (253)
T ss_pred cchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChh
Confidence 4689999999999999999998 99999999999999999999753
No 117
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=96.28 E-value=0.0083 Score=55.49 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=38.4
Q ss_pred CCHHHHHHHHhhc--CCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 203 LSWKDIEWLRSIT--NLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 203 ~~W~dl~~lr~~~--~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
..|+.+..+++.. ++|||.-| |.+++||.+.+.+|||+|.|.
T Consensus 265 ~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg 309 (327)
T cd04738 265 RSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLY 309 (327)
T ss_pred HHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhcc
Confidence 4588999999998 79999888 999999999999999999875
No 118
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.25 E-value=0.017 Score=52.66 Aligned_cols=41 Identities=20% Similarity=0.316 Sum_probs=34.7
Q ss_pred HHHHHHHHhhcC--CCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 205 WKDIEWLRSITN--LPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 205 W~dl~~lr~~~~--lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
|..++.+++..+ +|||.-| |.|.+||.+.+.+|||+|.|..
T Consensus 230 l~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~t 273 (294)
T cd04741 230 LGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGT 273 (294)
T ss_pred HHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEch
Confidence 344566667784 9999999 9999999999999999999864
No 119
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=96.25 E-value=0.037 Score=48.44 Aligned_cols=44 Identities=18% Similarity=0.316 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 202 SLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
..+.+-++.+++.+++|||+-| |-|.||++++.+.|++|++|.+
T Consensus 170 G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~vivgs 214 (221)
T TIGR00734 170 GPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLVAT 214 (221)
T ss_pred CCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEhH
Confidence 4578889999999999999999 9999999999999999999965
No 120
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=96.23 E-value=0.056 Score=48.01 Aligned_cols=138 Identities=14% Similarity=0.016 Sum_probs=85.7
Q ss_pred HHHHHHHHHCCCceeecCCCCccHHHHHHhcc---c-------cccCHHHHHHHHHHHHHcCCCEEEEccCCCC------
Q 039466 92 VATARAAASCNTIMVLSFTSSCSIEEVAASCN---A-------AYKKRDMAATLVQRAERNGFMALVLTADTPR------ 155 (263)
Q Consensus 92 ~a~AraA~~~gi~~~lss~s~~sieeV~~~~~---~-------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~------ 155 (263)
..+.+.+++..+|+.++- ..+|+|++...-. . .++|+++..++.++- |- .+++.+|...
T Consensus 64 ~~i~~i~~~~~~~v~vgG-GIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~---g~-~ivvslD~k~~g~~~~ 138 (243)
T TIGR01919 64 MMLEEVVKLLVVVEELSG-GRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYG---GD-IVAVGLDVLEDGEWHT 138 (243)
T ss_pred HHHHHHHHHCCCCEEEcC-CCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHc---cc-cEEEEEEEecCCceEE
Confidence 356677788888888874 4578888764322 1 467888777765543 43 3788888741
Q ss_pred ---CcchHHHHhhhhhhh-hhhhhhhc-----cccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cC
Q 039466 156 ---LDRREADIKNKMIAQ-QLKNLEGL-----LSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VL 225 (263)
Q Consensus 156 ---~g~R~~d~r~~~~~p-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~ 225 (263)
.||.+. ...+. -.+.+... -..++...+ ....++++-++.+++.+++|||.-| |-
T Consensus 139 v~~~Gw~~~----~~~~~~~~~~~~~~g~~~ii~tdI~~dG-----------t~~G~d~~l~~~l~~~~~~pviasGGv~ 203 (243)
T TIGR01919 139 LGNRGWSDG----GGDLEVLERLLDSGGCSRVVVTDSKKDG-----------LSGGPNELLLEVVAARTDAIVAASGGSS 203 (243)
T ss_pred EECCCeecC----CCcHHHHHHHHHhCCCCEEEEEecCCcc-----------cCCCcCHHHHHHHHhhCCCCEEEECCcC
Confidence 144331 11111 01111110 000111000 0134678889999999999999999 99
Q ss_pred CHHHHHHHH---HcCCCEEEEcC--CCCC
Q 039466 226 TREDAIKAV---EVGVAGIIVSN--HGAR 249 (263)
Q Consensus 226 s~eDA~~a~---~~G~dgI~VSN--HGGR 249 (263)
|.||.+++. +.|++|++|+. |-|+
T Consensus 204 s~eDl~~l~~l~~~Gv~gvivg~Al~~g~ 232 (243)
T TIGR01919 204 LLDDLRAIKYLDEGGVSVAIGGKLLYARF 232 (243)
T ss_pred CHHHHHHHHhhccCCeeEEEEhHHHHcCC
Confidence 999999875 45999999977 6553
No 121
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.19 E-value=0.055 Score=46.74 Aligned_cols=42 Identities=17% Similarity=0.366 Sum_probs=35.6
Q ss_pred CHHHHHHHHhh--cCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 204 SWKDIEWLRSI--TNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 204 ~W~dl~~lr~~--~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
+.+.++.+++. .+.|++.-| |.+++|++++.++|++|++|..
T Consensus 158 ~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGs 202 (217)
T cd00331 158 DLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGE 202 (217)
T ss_pred CHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECH
Confidence 34777888887 468999765 9999999999999999999854
No 122
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.19 E-value=0.022 Score=55.43 Aligned_cols=45 Identities=24% Similarity=0.337 Sum_probs=40.9
Q ss_pred HHHHHHHhhc-CCCEEEEe-cCCHHHHHHHHHcCCCEEEEcCCCCCCC
Q 039466 206 KDIEWLRSIT-NLPILIKG-VLTREDAIKAVEVGVAGIIVSNHGARQL 251 (263)
Q Consensus 206 ~dl~~lr~~~-~lPiilKG-I~s~eDA~~a~~~G~dgI~VSNHGGRql 251 (263)
+-++||++.. ++|||+ | |.|.|+|+.+.++|||+|-|+--+|...
T Consensus 255 ~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ 301 (475)
T TIGR01303 255 SAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAGANIIKVGVGPGAMC 301 (475)
T ss_pred HHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhCCCEEEECCcCCccc
Confidence 4599999986 699999 7 9999999999999999999999999765
No 123
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=96.18 E-value=0.2 Score=44.98 Aligned_cols=147 Identities=17% Similarity=0.188 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHCCCceeecCCCCccHHHHHHhccc-cccCHHH-HHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhh
Q 039466 89 EGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNA-AYKKRDM-AATLVQRAERNGFMALVLTADTPRLDRREADIKNK 166 (263)
Q Consensus 89 ~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~-~~~d~~~-~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~ 166 (263)
+|=..+.+.|++.|++++.+-....+++.+.+..+- ...-++. ...+++.+.+.|- .|-+.+...+ -..|+.+.
T Consensus 76 ~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~~d~lkI~s~~~~n~~LL~~~a~~gk---PVilk~G~~~-t~~e~~~A 151 (260)
T TIGR01361 76 EGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEYADILQIGARNMQNFELLKEVGKQGK---PVLLKRGMGN-TIEEWLYA 151 (260)
T ss_pred HHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhhCCEEEECcccccCHHHHHHHhcCCC---cEEEeCCCCC-CHHHHHHH
Confidence 444478899999999998888888888888766331 1111111 2346666655543 3333333221 12223222
Q ss_pred hhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEE-Ee-cCC-----HHHHHHHHHcCCC
Q 039466 167 MIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILI-KG-VLT-----REDAIKAVEVGVA 239 (263)
Q Consensus 167 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiil-KG-I~s-----~eDA~~a~~~G~d 239 (263)
... ++.... .++--... +...| .+......+|..|..+++.+++||++ -. ... +.-++.|+.+|++
T Consensus 152 ve~--i~~~Gn---~~i~l~~r-G~s~y-~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~ 224 (260)
T TIGR01361 152 AEY--ILSSGN---GNVILCER-GIRTF-EKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGAD 224 (260)
T ss_pred HHH--HHHcCC---CcEEEEEC-CCCCC-CCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCC
Confidence 110 000000 00000000 00000 01123457899999999999999999 44 333 7788899999999
Q ss_pred EEEEcCC
Q 039466 240 GIIVSNH 246 (263)
Q Consensus 240 gI~VSNH 246 (263)
||++=-|
T Consensus 225 gl~iE~H 231 (260)
T TIGR01361 225 GLMIEVH 231 (260)
T ss_pred EEEEEeC
Confidence 9998777
No 124
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=96.16 E-value=0.088 Score=45.63 Aligned_cols=111 Identities=18% Similarity=0.134 Sum_probs=68.7
Q ss_pred HHHHHHHHHCCCceeecCCCCccHHHHHHhccc--cc----cCH---H----HHHHHHHHHHHcCCCEEEEccCCCCCcc
Q 039466 92 VATARAAASCNTIMVLSFTSSCSIEEVAASCNA--AY----KKR---D----MAATLVQRAERNGFMALVLTADTPRLDR 158 (263)
Q Consensus 92 ~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~--~~----~d~---~----~~~~li~ra~~aG~~al~vTvD~~~~g~ 158 (263)
..+|+++.+.|+.. ++-.+..-+++|++. .+ +. ++- + ...+.++.+.++|++.+++ |.+...
T Consensus 30 ~~~a~~~~~~G~~~-~~~~~~~~~~~i~~~-~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~--~~~~~~- 104 (219)
T cd04729 30 AAMALAAVQGGAVG-IRANGVEDIRAIRAR-VDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIAL--DATDRP- 104 (219)
T ss_pred HHHHHHHHHCCCeE-EEcCCHHHHHHHHHh-CCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEE--eCCCCC-
Confidence 38999999999864 443332334555543 22 11 121 1 1234678899999986554 432210
Q ss_pred hHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCC
Q 039466 159 READIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGV 238 (263)
Q Consensus 159 R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~ 238 (263)
.| +.....+-++++++.-++|+++ ++.++++++.+.+.|+
T Consensus 105 ----------~p-----------------------------~~~~~~~~i~~~~~~g~~~iiv-~v~t~~ea~~a~~~G~ 144 (219)
T cd04729 105 ----------RP-----------------------------DGETLAELIKRIHEEYNCLLMA-DISTLEEALNAAKLGF 144 (219)
T ss_pred ----------CC-----------------------------CCcCHHHHHHHHHHHhCCeEEE-ECCCHHHHHHHHHcCC
Confidence 00 0012234566777766677776 7999999999999999
Q ss_pred CEEEEcCCC
Q 039466 239 AGIIVSNHG 247 (263)
Q Consensus 239 dgI~VSNHG 247 (263)
|.|.+++||
T Consensus 145 d~i~~~~~g 153 (219)
T cd04729 145 DIIGTTLSG 153 (219)
T ss_pred CEEEccCcc
Confidence 998766665
No 125
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=96.15 E-value=0.11 Score=47.98 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=31.2
Q ss_pred HHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEEcCC--CCCCC
Q 039466 205 WKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNH--GARQL 251 (263)
Q Consensus 205 W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~VSNH--GGRql 251 (263)
.+.++.+++ .++.++.+ |-|+++|+++.+.|+|+||+-++ ||..-
T Consensus 126 ~~~i~~l~~-~gi~v~~~-v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g 172 (330)
T PF03060_consen 126 PEVIERLHA-AGIKVIPQ-VTSVREARKAAKAGADAIVAQGPEAGGHRG 172 (330)
T ss_dssp HHHHHHHHH-TT-EEEEE-ESSHHHHHHHHHTT-SEEEEE-TTSSEE--
T ss_pred HHHHHHHHH-cCCccccc-cCCHHHHHHhhhcCCCEEEEeccccCCCCC
Confidence 345666554 47777776 89999999999999999999765 55444
No 126
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=96.14 E-value=0.039 Score=49.12 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=40.5
Q ss_pred CCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcCC
Q 039466 203 LSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 203 ~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSNH 246 (263)
.+|+-++.|++.+++||++=| |.|.+|++++.+.||++|+|+..
T Consensus 61 ~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~ 105 (254)
T TIGR00735 61 TMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTA 105 (254)
T ss_pred hhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChh
Confidence 578899999999999999988 99999999999999999999754
No 127
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=96.12 E-value=0.0053 Score=57.21 Aligned_cols=42 Identities=26% Similarity=0.281 Sum_probs=37.9
Q ss_pred CCHHHHHHHHhhc--CCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 203 LSWKDIEWLRSIT--NLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 203 ~~W~dl~~lr~~~--~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
..|+.++.+++.. ++|||.-| |.++|||.+.+.+|||+|.|+
T Consensus 274 ~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~ 318 (344)
T PRK05286 274 RSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIY 318 (344)
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHH
Confidence 4788999999998 79999888 999999999999999998764
No 128
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.10 E-value=0.049 Score=53.44 Aligned_cols=119 Identities=9% Similarity=0.108 Sum_probs=76.2
Q ss_pred HHHHHHHHHCCCceee-cCCCCc------cHHHHHHhccc---cccCHHHHHHHHHHHHHcCCCEEEEccCCCCC-cchH
Q 039466 92 VATARAAASCNTIMVL-SFTSSC------SIEEVAASCNA---AYKKRDMAATLVQRAERNGFMALVLTADTPRL-DRRE 160 (263)
Q Consensus 92 ~a~AraA~~~gi~~~l-ss~s~~------sieeV~~~~~~---~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~-g~R~ 160 (263)
..-+++.-++|+-++. .+.-.. .+++|++..|+ +..|-. +.+-.+++.++|+++|.|++=.... ..|+
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~-t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~ 328 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVV-TMYQAQNLIQAGVDGLRVGMGSGSICTTQE 328 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHcCcCEEEECCCCCccccCcc
Confidence 4566666667766554 322222 35566666664 234543 3344677778999999886532110 0000
Q ss_pred HHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCC-CCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCC
Q 039466 161 ADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDP-SLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGV 238 (263)
Q Consensus 161 ~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~ 238 (263)
. .....+ ...+..+..+.+.+++|||.=| |.++.|+.+|+.+||
T Consensus 329 ------------------------~----------~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA 374 (505)
T PLN02274 329 ------------------------V----------CAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGA 374 (505)
T ss_pred ------------------------c----------cccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCC
Confidence 0 000011 1246678889999999999999 999999999999999
Q ss_pred CEEEEcC
Q 039466 239 AGIIVSN 245 (263)
Q Consensus 239 dgI~VSN 245 (263)
++++|.+
T Consensus 375 ~~V~vGs 381 (505)
T PLN02274 375 STVMMGS 381 (505)
T ss_pred CEEEEch
Confidence 9999865
No 129
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.09 E-value=0.17 Score=45.19 Aligned_cols=154 Identities=15% Similarity=0.146 Sum_probs=85.8
Q ss_pred cccCCcccCCChhHHHHHHHHHHCCCceeecCCCCccHHHHHHhccc-cccCHH-HHHHHHHHHHHcCCCEEEEccCCCC
Q 039466 78 APTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNA-AYKKRD-MAATLVQRAERNGFMALVLTADTPR 155 (263)
Q Consensus 78 aP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~-~~~d~~-~~~~li~ra~~aG~~al~vTvD~~~ 155 (263)
+|-+++++.. +|=..+.+.|++.|++++..-.....++.+.+..+- ...-+. ....+++.+.+.| ..|-+...+
T Consensus 56 s~~sf~G~G~-~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e~vdilqIgs~~~~n~~LL~~va~tg---kPVilk~G~ 131 (250)
T PRK13397 56 SAASFQGLGL-QGIRYLHEVCQEFGLLSVSEIMSERQLEEAYDYLDVIQVGARNMQNFEFLKTLSHID---KPILFKRGL 131 (250)
T ss_pred CCcccCCCCH-HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHhcCCEEEECcccccCHHHHHHHHccC---CeEEEeCCC
Confidence 4556666653 566689999999999998887877788888774321 111111 1256677665554 233344332
Q ss_pred CcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCC---CCCHHHHHHHHhhcCCCEEE-----Eec--C
Q 039466 156 LDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDP---SLSWKDIEWLRSITNLPILI-----KGV--L 225 (263)
Q Consensus 156 ~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~W~dl~~lr~~~~lPiil-----KGI--~ 225 (263)
. --..|+.+.... +.... ..++- -..+-....... .++-..|..+++.+++|||+ =|. +
T Consensus 132 ~-~t~~e~~~A~e~--i~~~G---n~~i~-----L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~ 200 (250)
T PRK13397 132 M-ATIEEYLGALSY--LQDTG---KSNII-----LCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDL 200 (250)
T ss_pred C-CCHHHHHHHHHH--HHHcC---CCeEE-----EEccccCCCCCccccccCHHHHHHHHHHhCCCeEECCCCCCcccch
Confidence 1 112222221110 00000 00000 000011111112 45667789999999999998 343 2
Q ss_pred CHHHHHHHHHcCCCEEEEcCC
Q 039466 226 TREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 226 s~eDA~~a~~~G~dgI~VSNH 246 (263)
-+.-++.|+.+|+||+++=-|
T Consensus 201 v~~~a~AAvA~GAdGl~IE~H 221 (250)
T PRK13397 201 LLPAAKIAKAVGANGIMMEVH 221 (250)
T ss_pred HHHHHHHHHHhCCCEEEEEec
Confidence 246688999999999999777
No 130
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=96.09 E-value=0.028 Score=52.77 Aligned_cols=89 Identities=17% Similarity=0.243 Sum_probs=64.7
Q ss_pred cHHHHHHhccc--cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccH
Q 039466 114 SIEEVAASCNA--AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNL 191 (263)
Q Consensus 114 sieeV~~~~~~--~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~ 191 (263)
.++.|++..+. +.|+- .+.+-.++|.++|+++|+|+- .|-|.
T Consensus 227 ~i~~ir~~~~~pviiKgV-~~~eda~~a~~~G~d~I~VSn----hGGrq------------------------------- 270 (361)
T cd04736 227 DLRWLRDLWPHKLLVKGI-VTAEDAKRCIELGADGVILSN----HGGRQ------------------------------- 270 (361)
T ss_pred HHHHHHHhCCCCEEEecC-CCHHHHHHHHHCCcCEEEECC----CCcCC-------------------------------
Confidence 45556666654 45553 345567888899999999862 12221
Q ss_pred HHHHHHhcC-CCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 192 EAYAKETMD-PSLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 192 ~~~~~~~~~-~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
.+ ...+.+-|.++++.+++|||+-| |.+..|+.+|+.+|++++.|..
T Consensus 271 -------ld~~~~~~~~L~ei~~~~~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr 319 (361)
T cd04736 271 -------LDDAIAPIEALAEIVAATYKPVLIDSGIRRGSDIVKALALGANAVLLGR 319 (361)
T ss_pred -------CcCCccHHHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 01 11146778889988899999998 9999999999999999999863
No 131
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=96.07 E-value=0.013 Score=51.20 Aligned_cols=43 Identities=21% Similarity=0.397 Sum_probs=39.0
Q ss_pred CHHHHHHHHhhc-CCCEEEEe-cCCHHHHHHHHHcCCCEEEEcCC
Q 039466 204 SWKDIEWLRSIT-NLPILIKG-VLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 204 ~W~dl~~lr~~~-~lPiilKG-I~s~eDA~~a~~~G~dgI~VSNH 246 (263)
+-+.++.+++.+ ++|+++=| |-++|+|+.+.++|||+|+|+|.
T Consensus 162 ~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsa 206 (219)
T cd02812 162 PPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNI 206 (219)
T ss_pred CHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECch
Confidence 456789999998 99999987 99999999999999999999875
No 132
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=96.04 E-value=0.016 Score=50.55 Aligned_cols=43 Identities=19% Similarity=0.400 Sum_probs=39.4
Q ss_pred CCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 203 LSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 203 ~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
.+++.++.+++.+++||+++| |-+.+|++++.+.||++|+++.
T Consensus 61 ~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~ 104 (233)
T PRK00748 61 VNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGT 104 (233)
T ss_pred ccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECc
Confidence 467889999999999999999 9999999999999999998753
No 133
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=96.03 E-value=0.054 Score=48.59 Aligned_cols=194 Identities=16% Similarity=0.141 Sum_probs=105.1
Q ss_pred cccccccCCccchHHHHHHHHhccccceeccccccccccccccccCCcccccceeecccCC--------cccCCChhHHH
Q 039466 22 MYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTSTLDYKISASIIIAPTGL--------HKLANPEGEVA 93 (263)
Q Consensus 22 ~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~~v~~~d~st~~lG~~~~~Pi~iaP~~~--------~~l~~~~ge~a 93 (263)
..-.|+-.|--+..|..+-..++.+= +++-+ =+|-++|=|+.=.|+=- +++ ..+.-..
T Consensus 13 ~li~yi~aG~P~~~~~~~~~~~l~~~--------Gad~i-----ElGiPfSDP~aDGpvIq~a~~~AL~~G~-~~~~~~~ 78 (258)
T PRK13111 13 ALIPYITAGDPDLETSLEIIKALVEA--------GADII-----ELGIPFSDPVADGPVIQAASLRALAAGV-TLADVFE 78 (258)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHC--------CCCEE-----EECCCCCCCcccCHHHHHHHHHHHHcCC-CHHHHHH
Confidence 34578877776666555444333211 11111 17999999998888611 111 1122234
Q ss_pred HHHHHH--HCCCceeecCCCC----ccHHH----HHHhcc-c-cccC--HHHHHHHHHHHHHcCCCEEE-EccCCCCCcc
Q 039466 94 TARAAA--SCNTIMVLSFTSS----CSIEE----VAASCN-A-AYKK--RDMAATLVQRAERNGFMALV-LTADTPRLDR 158 (263)
Q Consensus 94 ~AraA~--~~gi~~~lss~s~----~siee----V~~~~~-~-~~~d--~~~~~~li~ra~~aG~~al~-vTvD~~~~g~ 158 (263)
..+..+ ..++|.++=++.+ +.+|+ .++++- + +..| .+...+.++++++.|...++ ++-.++. .
T Consensus 79 ~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~--e 156 (258)
T PRK13111 79 LVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTD--E 156 (258)
T ss_pred HHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCH--H
Confidence 444433 3577866655543 24444 333332 2 2222 25677888999999998887 5655542 1
Q ss_pred hHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcC
Q 039466 159 READIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVG 237 (263)
Q Consensus 159 R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G 237 (263)
|-+.+... . ..+... ... .+..+. ....+.-.-+.++.+|+.+++||++=+ |.+++|+..+.+.
T Consensus 157 ri~~i~~~-s----~gfIY~--vs~--~GvTG~-----~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~- 221 (258)
T PRK13111 157 RLKKIASH-A----SGFVYY--VSR--AGVTGA-----RSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAV- 221 (258)
T ss_pred HHHHHHHh-C----CCcEEE--EeC--CCCCCc-----ccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-
Confidence 22111100 0 000000 000 000000 000111123579999999999999854 9999999999986
Q ss_pred CCEEEEcCC
Q 039466 238 VAGIIVSNH 246 (263)
Q Consensus 238 ~dgI~VSNH 246 (263)
|||++|.++
T Consensus 222 ADGviVGSa 230 (258)
T PRK13111 222 ADGVIVGSA 230 (258)
T ss_pred CCEEEEcHH
Confidence 999999864
No 134
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.02 E-value=0.059 Score=51.33 Aligned_cols=118 Identities=13% Similarity=0.110 Sum_probs=74.3
Q ss_pred HHHHHHHHHHCCCceee--cCCC-Cc----cHHHHHHhccc---cccCHHHHHHHHHHHHHcCCCEEEEccCCC-CCcch
Q 039466 91 EVATARAAASCNTIMVL--SFTS-SC----SIEEVAASCNA---AYKKRDMAATLVQRAERNGFMALVLTADTP-RLDRR 159 (263)
Q Consensus 91 e~a~AraA~~~gi~~~l--ss~s-~~----sieeV~~~~~~---~~~d~~~~~~li~ra~~aG~~al~vTvD~~-~~g~R 159 (263)
..+.+++..++|+-+++ ++.. +. .+++|++..|+ +..|- .+.+..+.+.++|+++|.+.+-.- ..+.|
T Consensus 154 ~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V-~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr 232 (404)
T PRK06843 154 TIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNI-VTKEAALDLISVGADCLKVGIGPGSICTTR 232 (404)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEec-CCHHHHHHHHHcCCCEEEECCCCCcCCcce
Confidence 45778888888888887 5443 22 24455555554 23333 234556677789999988644321 01111
Q ss_pred HHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHH---HHHHHHhhcCCCEEEEe-cCCHHHHHHHHH
Q 039466 160 EADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWK---DIEWLRSITNLPILIKG-VLTREDAIKAVE 235 (263)
Q Consensus 160 ~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~---dl~~lr~~~~lPiilKG-I~s~eDA~~a~~ 235 (263)
.. . .-+...+. ++..+.+.+++|||.-| |.+++|+.+|+.
T Consensus 233 ~~---~---------------------------------g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALa 276 (404)
T PRK06843 233 IV---A---------------------------------GVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIA 276 (404)
T ss_pred ee---c---------------------------------CCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHH
Confidence 00 0 00111223 44556667789999999 999999999999
Q ss_pred cCCCEEEEcC
Q 039466 236 VGVAGIIVSN 245 (263)
Q Consensus 236 ~G~dgI~VSN 245 (263)
+||++|+|.+
T Consensus 277 lGA~aVmvGs 286 (404)
T PRK06843 277 AGADSVMIGN 286 (404)
T ss_pred cCCCEEEEcc
Confidence 9999999854
No 135
>PRK06801 hypothetical protein; Provisional
Probab=95.98 E-value=0.096 Score=47.69 Aligned_cols=45 Identities=24% Similarity=0.514 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHhhcCCCEEEEec--CCHHHHHHHHHcCCCEEEEc
Q 039466 200 DPSLSWKDIEWLRSITNLPILIKGV--LTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 200 ~~~~~W~dl~~lr~~~~lPiilKGI--~s~eDA~~a~~~G~dgI~VS 244 (263)
.+.++|+-|+.+++..+.|+++=|- .+.++.++++++|++.|=|+
T Consensus 187 ~~~l~~e~l~~i~~~~~~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~ 233 (286)
T PRK06801 187 EPKLDFARLAAIHQQTGLPLVLHGGSGISDADFRRAIELGIHKINFY 233 (286)
T ss_pred CCCCCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEeh
Confidence 3568999999999999999999998 89999999999999999775
No 136
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=95.96 E-value=0.06 Score=48.24 Aligned_cols=131 Identities=16% Similarity=0.156 Sum_probs=71.1
Q ss_pred hHHH-HHHHHHHCCCceeecCCCCccHHHHHHh---ccc----c--ccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcch
Q 039466 90 GEVA-TARAAASCNTIMVLSFTSSCSIEEVAAS---CNA----A--YKKRDMAATLVQRAERNGFMALVLTADTPRLDRR 159 (263)
Q Consensus 90 ge~a-~AraA~~~gi~~~lss~s~~sieeV~~~---~~~----~--~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R 159 (263)
|.+. +..+.+..++|...-.+-+.+. +|.++ +.+ . ..+.+...+++++++..|..+++=.-+. ....|
T Consensus 98 g~~~~l~~v~~~v~iPvl~kdfi~~~~-qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~-~E~~~ 175 (260)
T PRK00278 98 GSLEYLRAARAAVSLPVLRKDFIIDPY-QIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDE-EELER 175 (260)
T ss_pred CCHHHHHHHHHhcCCCEEeeeecCCHH-HHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCH-HHHHH
Confidence 4443 3333444688888766665555 45433 223 1 1244678899999999886655432221 10111
Q ss_pred HHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcC--CCEEE-EecCCHHHHHHHHHc
Q 039466 160 EADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITN--LPILI-KGVLTREDAIKAVEV 236 (263)
Q Consensus 160 ~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~--lPiil-KGI~s~eDA~~a~~~ 236 (263)
. ...+.. +..+...++ ..-..+.+...++++..+ .|+|. =||.+++|+.++.++
T Consensus 176 A--~~~gad------iIgin~rdl---------------~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~ 232 (260)
T PRK00278 176 A--LKLGAP------LIGINNRNL---------------KTFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKA 232 (260)
T ss_pred H--HHcCCC------EEEECCCCc---------------ccccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHc
Confidence 0 000000 000000000 001223566677777653 47665 469999999999999
Q ss_pred CCCEEEEcC
Q 039466 237 GVAGIIVSN 245 (263)
Q Consensus 237 G~dgI~VSN 245 (263)
|+|||+|..
T Consensus 233 Gad~vlVGs 241 (260)
T PRK00278 233 GADAVLVGE 241 (260)
T ss_pred CCCEEEECH
Confidence 999999853
No 137
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=95.96 E-value=0.042 Score=51.21 Aligned_cols=44 Identities=16% Similarity=0.273 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcC-CCEEEEc
Q 039466 201 PSLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVG-VAGIIVS 244 (263)
Q Consensus 201 ~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G-~dgI~VS 244 (263)
....|+.++.+++.+++||++-| |.++++++++++.| +|+|.++
T Consensus 270 ~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~g 315 (343)
T cd04734 270 PGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGMT 315 (343)
T ss_pred cchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeeec
Confidence 34568889999999999999999 99999999999965 9999873
No 138
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=95.95 E-value=0.018 Score=50.83 Aligned_cols=45 Identities=18% Similarity=0.353 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHhhcCC-CEEEEe-cCCHHHHHHHHHcCCCEEEEcCC
Q 039466 202 SLSWKDIEWLRSITNL-PILIKG-VLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~l-PiilKG-I~s~eDA~~a~~~G~dgI~VSNH 246 (263)
..+.+.++.+++.++. |+++=| |-++|+|+++++.|||+|+|++.
T Consensus 169 ~~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSa 215 (232)
T PRK04169 169 PVPPEMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIVVGNI 215 (232)
T ss_pred CCCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEChH
Confidence 3468899999999998 999987 99999999999999999999874
No 139
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=95.94 E-value=0.094 Score=47.63 Aligned_cols=146 Identities=16% Similarity=0.332 Sum_probs=83.9
Q ss_pred HHHHHHHCCCceeecCCCCccHHHHHHhcc-c---c-c--------cCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchH
Q 039466 94 TARAAASCNTIMVLSFTSSCSIEEVAASCN-A---A-Y--------KKRDMAATLVQRAERNGFMALVLTADTPRLDRRE 160 (263)
Q Consensus 94 ~AraA~~~gi~~~lss~s~~sieeV~~~~~-~---~-~--------~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~ 160 (263)
+...|++..+|.+|---=..+++.+.++-. | + + .+.+.++++++.+++.|+. |-.+.-..|..+
T Consensus 66 ~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~---veaE~ghlG~~d 142 (281)
T PRK06806 66 MVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGAT---VEAEIGRVGGSE 142 (281)
T ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCe---EEEEeeeECCcc
Confidence 345677788998886655567777766543 2 1 1 2234577888888887754 233333333222
Q ss_pred HHHh-hh--hhhh-hhhhhhhccccC-CCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe--cCCHHHHHHH
Q 039466 161 ADIK-NK--MIAQ-QLKNLEGLLSTK-VTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG--VLTREDAIKA 233 (263)
Q Consensus 161 ~d~r-~~--~~~p-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG--I~s~eDA~~a 233 (263)
.+.. .+ +.-| ....+......+ +.-..+..++.+ ...+.++++.|++|++..++|+++=| =.+.|+..++
T Consensus 143 ~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~---~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~ 219 (281)
T PRK06806 143 DGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMY---NGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKC 219 (281)
T ss_pred CCcccccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCC---CCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH
Confidence 1110 01 1111 111111000000 000001111111 13467899999999999999999999 5899999999
Q ss_pred HHcCCCEEEEcC
Q 039466 234 VEVGVAGIIVSN 245 (263)
Q Consensus 234 ~~~G~dgI~VSN 245 (263)
++.|+++|-|+.
T Consensus 220 i~~G~~kinv~T 231 (281)
T PRK06806 220 IQHGIRKINVAT 231 (281)
T ss_pred HHcCCcEEEEhH
Confidence 999999997753
No 140
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=95.94 E-value=0.12 Score=46.91 Aligned_cols=170 Identities=15% Similarity=0.215 Sum_probs=92.0
Q ss_pred cccccceeecccCCcccCCChhH-H--HHHHHHHHCC-CceeecCCCCccHHHHHHhcc-c------------cccCHHH
Q 039466 69 YKISASIIIAPTGLHKLANPEGE-V--ATARAAASCN-TIMVLSFTSSCSIEEVAASCN-A------------AYKKRDM 131 (263)
Q Consensus 69 ~~~~~Pi~iaP~~~~~l~~~~ge-~--a~AraA~~~g-i~~~lss~s~~sieeV~~~~~-~------------~~~d~~~ 131 (263)
.+...|++|.-.-.+--+.+..+ . .+...|++.+ +|+++-.--..+++.|.++.. + .-.+.+.
T Consensus 37 e~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~ 116 (282)
T TIGR01859 37 EEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLAL 116 (282)
T ss_pred HHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHH
Confidence 34567777754322211112112 2 3344577788 899887544446777665543 2 1123456
Q ss_pred HHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhh----hhhh-hhhhhhh-ccccCCCCCCCccHHHHHHHhcCCCCCH
Q 039466 132 AATLVQRAERNGFMALVLTADTPRLDRREADIKNK----MIAQ-QLKNLEG-LLSTKVTSDTGSNLEAYAKETMDPSLSW 205 (263)
Q Consensus 132 ~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~----~~~p-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~W 205 (263)
++++++.+++.|+. +-.-+.. .|..+ |...+ +.-| ....+.. ....-+.-..+..++.+ ...+.+++
T Consensus 117 t~~v~~~a~~~gv~-Ve~ElG~--~gg~e-d~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~---~~~~~l~~ 189 (282)
T TIGR01859 117 TKKVVEIAHAKGVS-VEAELGT--LGGIE-DGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGKY---KGEPGLDF 189 (282)
T ss_pred HHHHHHHHHHcCCE-EEEeeCC--CcCcc-ccccccccccCCHHHHHHHHHHHCcCEEeeccCcccccc---CCCCccCH
Confidence 78888888888852 3333322 22111 11111 1112 1111110 00000000001111111 12367899
Q ss_pred HHHHHHHhhcCCCEEEEe--cCCHHHHHHHHHcCCCEEEEcC
Q 039466 206 KDIEWLRSITNLPILIKG--VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 206 ~dl~~lr~~~~lPiilKG--I~s~eDA~~a~~~G~dgI~VSN 245 (263)
+-|++|++..++|+++=| =.+.++..+++++|+++|=|+.
T Consensus 190 e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T 231 (282)
T TIGR01859 190 ERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKINIDT 231 (282)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEEECc
Confidence 999999999999999999 5899999999999999998764
No 141
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=95.90 E-value=0.085 Score=47.95 Aligned_cols=45 Identities=22% Similarity=0.629 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHhhcCCCEEEEec--CCHHHHHHHHHcCCCEEEEc
Q 039466 200 DPSLSWKDIEWLRSITNLPILIKGV--LTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 200 ~~~~~W~dl~~lr~~~~lPiilKGI--~s~eDA~~a~~~G~dgI~VS 244 (263)
.|.++|+-|+.|++.+++|+++=|- .+.|+-++|+++|+.=|=|.
T Consensus 184 ~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 230 (282)
T TIGR01858 184 TPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGICKVNVA 230 (282)
T ss_pred CCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeC
Confidence 4789999999999999999999996 68899999999999877554
No 142
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.87 E-value=0.07 Score=48.93 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHc-CCCEEEEc
Q 039466 202 SLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEV-GVAGIIVS 244 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~-G~dgI~VS 244 (263)
...|+.++.+++.+++||+.-| |.++++++++++. |||.|.++
T Consensus 267 ~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 267 GYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALG 311 (327)
T ss_pred chhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeec
Confidence 4567889999999999999999 8999999999998 79999874
No 143
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=95.83 E-value=0.076 Score=49.45 Aligned_cols=168 Identities=15% Similarity=0.176 Sum_probs=103.8
Q ss_pred cccccccCCccchHHHHHHHHhccccceeccccccccccccccccCCcccccceeecccCCcccCC--ChhHHHHHHHHH
Q 039466 22 MYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTSTLDYKISASIIIAPTGLHKLAN--PEGEVATARAAA 99 (263)
Q Consensus 22 ~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~~v~~~d~st~~lG~~~~~Pi~iaP~~~~~l~~--~~ge~a~AraA~ 99 (263)
.....+.++......++++...+....-.|... +.|+... .|++...+.| ..-+...--.+.
T Consensus 38 GglG~ia~~~~~~e~l~~~i~~~~~~~~~p~~~----------~~f~~~~------~~v~~~~l~~~~~~~~~~~~~ii~ 101 (336)
T COG2070 38 GGLGIIASGGLPAEQLRAEIRKIRALTDKPFVA----------NNFGSAP------APVNVNILVARRNAAEAGVDAIIE 101 (336)
T ss_pred CCccccccccCCHHHHHHHHHHHHHhcCCcchh----------ccccccc------ccchhheecccccchHHhhhhHHh
Confidence 344566666666677777777766665555332 2344332 5666666655 344555666677
Q ss_pred HCCCceeecCCCCccHHHHHHhcc-c--cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhh
Q 039466 100 SCNTIMVLSFTSSCSIEEVAASCN-A--AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLE 176 (263)
Q Consensus 100 ~~gi~~~lss~s~~sieeV~~~~~-~--~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~ 176 (263)
.+|++.+..+....+-+.|..... + +..+- .+.+..++++++|+++++.-==- -.|-+
T Consensus 102 ~~~vpvv~~~~g~~~~~~i~~~~~~g~~v~~~v-~~~~~A~~~~~~G~d~vI~~g~e-AGGH~----------------- 162 (336)
T COG2070 102 GAGVPVVSTSFGAPPAEFVARLKAAGIKVIHSV-ITVREALKAERAGADAVIAQGAE-AGGHR----------------- 162 (336)
T ss_pred cCCCCEEeccCCCCcHHHHHHHHHcCCeEEEEe-CCHHHHHHHHhCCCCEEEecCCc-CCCcC-----------------
Confidence 789999988887555555543321 1 11111 23445677888888877632110 00000
Q ss_pred hccccCCCCCCCccHHHHHHHhcCCCCC-HHHHHHHHhhcC-CCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 177 GLLSTKVTSDTGSNLEAYAKETMDPSLS-WKDIEWLRSITN-LPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-W~dl~~lr~~~~-lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
. . .+..++ -.-+.++++..+ +|||.=| |.+.++...|+..|++||.+.
T Consensus 163 ----------------g---~-~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalGA~gVq~G 213 (336)
T COG2070 163 ----------------G---G-VDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALGADGVQMG 213 (336)
T ss_pred ----------------C---C-CCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhccHHHHhh
Confidence 0 0 122332 345788899888 8999999 999999999999999999874
No 144
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=95.83 E-value=0.11 Score=44.94 Aligned_cols=112 Identities=14% Similarity=0.129 Sum_probs=66.6
Q ss_pred HHHHHHHHHHCCCceeecCCCCccHHHHHHhccc-c----ccCH---HH----HHHHHHHHHHcCCCEEEEccCCCCCcc
Q 039466 91 EVATARAAASCNTIMVLSFTSSCSIEEVAASCNA-A----YKKR---DM----AATLVQRAERNGFMALVLTADTPRLDR 158 (263)
Q Consensus 91 e~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~-~----~~d~---~~----~~~li~ra~~aG~~al~vTvD~~~~g~ 158 (263)
-..+|+++.+.|+..+ +..+..-+++|++...- + .+|. .. ..+.++.+.++|++.++ +|.+..-
T Consensus 25 ~~~~a~a~~~~G~~~~-~~~~~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~--~d~~~~~- 100 (221)
T PRK01130 25 MAAMALAAVQGGAVGI-RANGVEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIA--LDATLRP- 100 (221)
T ss_pred HHHHHHHHHHCCCeEE-EcCCHHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEE--EeCCCCC-
Confidence 3489999999997543 33322334444443211 1 3331 11 23557889999998444 4543200
Q ss_pred hHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCC-CCHH-HHHHHHhhcCCCEEEEecCCHHHHHHHHHc
Q 039466 159 READIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPS-LSWK-DIEWLRSITNLPILIKGVLTREDAIKAVEV 236 (263)
Q Consensus 159 R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~W~-dl~~lr~~~~lPiilKGI~s~eDA~~a~~~ 236 (263)
.+. -+.. -++.+++..++|++ .++.+.++++++.+.
T Consensus 101 -----------------------------------------~p~~~~~~~~i~~~~~~~~i~vi-~~v~t~ee~~~a~~~ 138 (221)
T PRK01130 101 -----------------------------------------RPDGETLAELVKRIKEYPGQLLM-ADCSTLEEGLAAQKL 138 (221)
T ss_pred -----------------------------------------CCCCCCHHHHHHHHHhCCCCeEE-EeCCCHHHHHHHHHc
Confidence 000 1222 35555554567766 579999999999999
Q ss_pred CCCEEEEcCCCC
Q 039466 237 GVAGIIVSNHGA 248 (263)
Q Consensus 237 G~dgI~VSNHGG 248 (263)
|+|.|.++++|-
T Consensus 139 G~d~i~~~~~g~ 150 (221)
T PRK01130 139 GFDFIGTTLSGY 150 (221)
T ss_pred CCCEEEcCCcee
Confidence 999887766543
No 145
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.76 E-value=0.062 Score=47.68 Aligned_cols=132 Identities=13% Similarity=0.120 Sum_probs=78.2
Q ss_pred HHHHHHHCCCceeecCCCCccHHHHHHhcc---c-------cccCHHHHHHHHHHHHHcCCCEEEEccCCCC-----Ccc
Q 039466 94 TARAAASCNTIMVLSFTSSCSIEEVAASCN---A-------AYKKRDMAATLVQRAERNGFMALVLTADTPR-----LDR 158 (263)
Q Consensus 94 ~AraA~~~gi~~~lss~s~~sieeV~~~~~---~-------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~-----~g~ 158 (263)
+.+.++++ .|+.++- ...++|++.+... + .++|++...++ . +-|- .+++.+|.-. .||
T Consensus 66 i~~i~~~~-~~v~vGG-GIrs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~-~---~~~~-~ivvslD~k~g~v~~~gw 138 (241)
T PRK14114 66 LEKLSEFA-EHIQIGG-GIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFL-K---EIDV-EPVFSLDTRGGKVAFKGW 138 (241)
T ss_pred HHHHHhhc-CcEEEec-CCCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHH-H---HhCC-CEEEEEEccCCEEeeCCC
Confidence 34444444 5777763 3467787765321 1 45788776665 2 2343 4799999743 366
Q ss_pred hHHHHhhhhhhhhhhhhhhcc-----ccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHH
Q 039466 159 READIKNKMIAQQLKNLEGLL-----STKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTREDAIK 232 (263)
Q Consensus 159 R~~d~r~~~~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~ 232 (263)
++..-..-..+ .+.+.... ..++... . ....++.+-++.+++.+++|||.-| |-|.+|..+
T Consensus 139 ~~~~~~~~~e~--~~~~~~~g~~~ii~tdI~rd----------G-t~~G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~ 205 (241)
T PRK14114 139 LAEEEIDPVSL--LKRLKEYGLEEIVHTEIEKD----------G-TLQEHDFSLTRKIAIEAEVKVFAAGGISSENSLKT 205 (241)
T ss_pred eecCCCCHHHH--HHHHHhcCCCEEEEEeechh----------h-cCCCcCHHHHHHHHHHCCCCEEEECCCCCHHHHHH
Confidence 54211111111 01111100 0011100 0 0123677889999999999999999 999999999
Q ss_pred HHHc-----C-CCEEEEcC
Q 039466 233 AVEV-----G-VAGIIVSN 245 (263)
Q Consensus 233 a~~~-----G-~dgI~VSN 245 (263)
+.+. | ++|++|+.
T Consensus 206 l~~~~~~~~g~v~gvivg~ 224 (241)
T PRK14114 206 AQRVHRETNGLLKGVIVGR 224 (241)
T ss_pred HHhcccccCCcEEEEEEeh
Confidence 9986 6 99999964
No 146
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=95.75 E-value=0.16 Score=46.67 Aligned_cols=42 Identities=12% Similarity=-0.115 Sum_probs=27.6
Q ss_pred HHHHHHHHhhcCCCEEEEec--CCHHHHH-H---HHHcCCCEEEEcCC
Q 039466 205 WKDIEWLRSITNLPILIKGV--LTREDAI-K---AVEVGVAGIIVSNH 246 (263)
Q Consensus 205 W~dl~~lr~~~~lPiilKGI--~s~eDA~-~---a~~~G~dgI~VSNH 246 (263)
-+-++++++.++.||++|== .+..+.. . +.+.|+++|..-|-
T Consensus 146 ~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt 193 (310)
T PRK02506 146 EQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINS 193 (310)
T ss_pred HHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEecc
Confidence 35589999999999999931 2322222 2 23568888877774
No 147
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=95.73 E-value=0.28 Score=45.13 Aligned_cols=89 Identities=21% Similarity=0.204 Sum_probs=57.6
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHH
Q 039466 127 KKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWK 206 (263)
Q Consensus 127 ~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 206 (263)
.|++...+..+++++.||+.|-++.-+|.. + -.+.+. +..+ ..++.+--+
T Consensus 72 ~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~--~--v~~~g~------------------------Gs~L--l~~~~~~~e 121 (312)
T PRK10550 72 QYPQWLAENAARAVELGSWGVDLNCGCPSK--T--VNGSGG------------------------GATL--LKDPELIYQ 121 (312)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCch--H--HhcCCC------------------------chHh--hcCHHHHHH
Confidence 578888888889999999999998888751 0 000000 0011 112333335
Q ss_pred HHHHHHhhcC--CCEEEE---ecCCH----HHHHHHHHcCCCEEEEcC
Q 039466 207 DIEWLRSITN--LPILIK---GVLTR----EDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 207 dl~~lr~~~~--lPiilK---GI~s~----eDA~~a~~~G~dgI~VSN 245 (263)
-++.+++.++ +||-+| |..+. +=|+.+.+.|+|.|.|+.
T Consensus 122 iv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~ 169 (312)
T PRK10550 122 GAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHG 169 (312)
T ss_pred HHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECC
Confidence 5788888884 999999 65332 334556679999999953
No 148
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=95.71 E-value=0.075 Score=52.03 Aligned_cols=121 Identities=12% Similarity=0.142 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHCCCceee--cCC--CCc---cHHHHHHhccc--c-ccCHHHHHHHHHHHHHcCCCEEEEccCCCCC-cc
Q 039466 90 GEVATARAAASCNTIMVL--SFT--SSC---SIEEVAASCNA--A-YKKRDMAATLVQRAERNGFMALVLTADTPRL-DR 158 (263)
Q Consensus 90 ge~a~AraA~~~gi~~~l--ss~--s~~---sieeV~~~~~~--~-~~d~~~~~~li~ra~~aG~~al~vTvD~~~~-g~ 158 (263)
.+...+++..++|+-++. .+. +.. .+++|++..|+ + -.|- .+.+-.+.+.++|+++|.|.+-.-.. .-
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V-~t~~~a~~~~~aGad~I~vg~g~Gs~~~t 319 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNV-VTADQAKNLIDAGADGLRIGMGSGSICIT 319 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCc-CCHHHHHHHHHcCCCEEEECCcCCccccc
Confidence 446888888999987766 221 111 35566666554 2 1221 23345667778999999886542210 00
Q ss_pred hHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCC-CHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHc
Q 039466 159 READIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSL-SWKDIEWLRSITNLPILIKG-VLTREDAIKAVEV 236 (263)
Q Consensus 159 R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~ 236 (263)
| ...++ .-|.+ ...++..+.+..++|||.-| |.++.|+.+|+.+
T Consensus 320 ~---~~~~~-------------------------------g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~ 365 (495)
T PTZ00314 320 Q---EVCAV-------------------------------GRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALAL 365 (495)
T ss_pred c---hhccC-------------------------------CCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHc
Confidence 0 00000 01111 23455566667789999987 9999999999999
Q ss_pred CCCEEEEcC
Q 039466 237 GVAGIIVSN 245 (263)
Q Consensus 237 G~dgI~VSN 245 (263)
||+++++.+
T Consensus 366 GA~~Vm~G~ 374 (495)
T PTZ00314 366 GADCVMLGS 374 (495)
T ss_pred CCCEEEECc
Confidence 999999865
No 149
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=95.70 E-value=0.05 Score=50.96 Aligned_cols=42 Identities=21% Similarity=0.383 Sum_probs=37.5
Q ss_pred CCHHHHHHHHhhc--CCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 203 LSWKDIEWLRSIT--NLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 203 ~~W~dl~~lr~~~--~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
.+|+.|.++++.. ++|||+-| |.+..|+.+|+.+||++|.|.
T Consensus 261 ~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iG 305 (351)
T cd04737 261 ASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVG 305 (351)
T ss_pred hHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 3577888888876 69999999 999999999999999999985
No 150
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.68 E-value=0.12 Score=47.05 Aligned_cols=145 Identities=17% Similarity=0.282 Sum_probs=83.5
Q ss_pred HHHHHHCCCceeecCCCCccHHHHHHhcc-c------------cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHH
Q 039466 95 ARAAASCNTIMVLSFTSSCSIEEVAASCN-A------------AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREA 161 (263)
Q Consensus 95 AraA~~~gi~~~lss~s~~sieeV~~~~~-~------------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~ 161 (263)
-..|+++++|.+|---=..++|.|.++-. | +-.|-..+++.++.|++.|+.. -.-.-..|.-+.
T Consensus 67 ~~~a~~~~VPValHLDH~~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsV---EaElG~igg~e~ 143 (284)
T PRK12737 67 EVAARKYNIPLALHLDHHEDLDDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASV---EAELGRLGGQED 143 (284)
T ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEE---EEEEeeccCccC
Confidence 34566788998886555557788766542 2 2245567888888888877432 111011111111
Q ss_pred HH-----hhhhhhh-hhhhhhh-ccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEec--CCHHHHHH
Q 039466 162 DI-----KNKMIAQ-QLKNLEG-LLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGV--LTREDAIK 232 (263)
Q Consensus 162 d~-----r~~~~~p-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKGI--~s~eDA~~ 232 (263)
+. ..-|+-| ....|.. .....+.-..++.++.+. ..|.++|+-|+.|++.+++|+++=|- .+.|+-++
T Consensus 144 ~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~---~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~k 220 (284)
T PRK12737 144 DLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLYK---GEPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKK 220 (284)
T ss_pred CcccccccccCCCHHHHHHHHHHhCCCEEeeccCccccccC---CCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHH
Confidence 10 0112223 1111110 000001111122333332 24789999999999999999999996 68899999
Q ss_pred HHHcCCCEEEEcC
Q 039466 233 AVEVGVAGIIVSN 245 (263)
Q Consensus 233 a~~~G~dgI~VSN 245 (263)
|++.|+.=|=|+.
T Consensus 221 ai~~Gi~KiNi~T 233 (284)
T PRK12737 221 AISLGICKVNVAT 233 (284)
T ss_pred HHHCCCeEEEeCc
Confidence 9999998876543
No 151
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.65 E-value=0.023 Score=49.84 Aligned_cols=45 Identities=22% Similarity=0.406 Sum_probs=40.7
Q ss_pred CCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcCCC
Q 039466 203 LSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSNHG 247 (263)
Q Consensus 203 ~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSNHG 247 (263)
..|+.|+.+.+.+++||++-| |-+.||++++++.||++|+|++..
T Consensus 63 ~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~ 108 (241)
T PRK13585 63 KNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAA 108 (241)
T ss_pred ccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHH
Confidence 468899999999999999976 999999999999999999997644
No 152
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=95.65 E-value=0.058 Score=50.20 Aligned_cols=42 Identities=14% Similarity=0.125 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcC-CCEEEE
Q 039466 202 SLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVG-VAGIIV 243 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G-~dgI~V 243 (263)
...|+..+.+|+.+++||+.-| |.++++|+++++.| +|.|.+
T Consensus 261 ~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~ 304 (337)
T PRK13523 261 GYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFI 304 (337)
T ss_pred cccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHh
Confidence 3478889999999999999998 89999999999976 998865
No 153
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.56 E-value=0.36 Score=43.95 Aligned_cols=41 Identities=12% Similarity=0.119 Sum_probs=28.0
Q ss_pred HHHHHHHhhcCCCEEEEec--CCHHH----HHHHHHc--CCCEEEEcCC
Q 039466 206 KDIEWLRSITNLPILIKGV--LTRED----AIKAVEV--GVAGIIVSNH 246 (263)
Q Consensus 206 ~dl~~lr~~~~lPiilKGI--~s~eD----A~~a~~~--G~dgI~VSNH 246 (263)
+-++++++.+++||++|== .+.++ |+.+.+. |+|||++.|-
T Consensus 147 ~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt 195 (294)
T cd04741 147 EYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNT 195 (294)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEcc
Confidence 3478888899999999931 23222 3333356 9999998653
No 154
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=95.54 E-value=0.22 Score=42.32 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=34.7
Q ss_pred CHHHHHHHHhhc-CCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 204 SWKDIEWLRSIT-NLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 204 ~W~dl~~lr~~~-~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
..+.++++++.. ++|++.=| | +++++...++.|+++|.||+
T Consensus 130 g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s 172 (190)
T cd00452 130 GPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGGGS 172 (190)
T ss_pred CHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEEch
Confidence 345677788776 49999997 7 99999999999999999876
No 155
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.53 E-value=0.15 Score=46.39 Aligned_cols=142 Identities=18% Similarity=0.304 Sum_probs=81.5
Q ss_pred HHHHCCCceeecCCCCccHHHHHHhcc-c------------cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHH-
Q 039466 97 AAASCNTIMVLSFTSSCSIEEVAASCN-A------------AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREAD- 162 (263)
Q Consensus 97 aA~~~gi~~~lss~s~~sieeV~~~~~-~------------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d- 162 (263)
.|+++.+|.+|---=..++|.|.++-. | +-.|.+.+++.++.|+..|+.. -.-.-..|.-+..
T Consensus 69 ~A~~~~VPValHLDH~~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsV---EaElG~vgg~e~~~ 145 (284)
T PRK12857 69 AAEKASVPVALHLDHGTDFEQVMKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSV---EAELGKIGGTEDDI 145 (284)
T ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE---EEEeeecCCccCCC
Confidence 566788888886655567777765532 2 2235567888888888777422 1111111111110
Q ss_pred ----Hhhhhhhh-hhhhhhh-ccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEec--CCHHHHHHHH
Q 039466 163 ----IKNKMIAQ-QLKNLEG-LLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGV--LTREDAIKAV 234 (263)
Q Consensus 163 ----~r~~~~~p-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKGI--~s~eDA~~a~ 234 (263)
....|+-| ....|.. ....-+.-..++.++.+. ..|.++|+-|++|++..++|+++=|- .+.|+-++|+
T Consensus 146 ~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~---~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai 222 (284)
T PRK12857 146 TVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYK---GEPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAI 222 (284)
T ss_pred CcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccccC---CCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHH
Confidence 01112223 1111110 000000111122333332 24789999999999999999999997 7899999999
Q ss_pred HcCCCEEEEc
Q 039466 235 EVGVAGIIVS 244 (263)
Q Consensus 235 ~~G~dgI~VS 244 (263)
+.|+.=|=|+
T Consensus 223 ~~Gi~KiNi~ 232 (284)
T PRK12857 223 SLGVRKVNID 232 (284)
T ss_pred HcCCeEEEeC
Confidence 9999877554
No 156
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=95.51 E-value=0.026 Score=50.52 Aligned_cols=40 Identities=23% Similarity=0.439 Sum_probs=33.9
Q ss_pred CHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEE
Q 039466 204 SWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIV 243 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~V 243 (263)
+++||..+|+.+++|+.-|- |.++-....|..+|||+|.+
T Consensus 97 s~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GADaVLL 137 (254)
T PF00218_consen 97 SLEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGADAVLL 137 (254)
T ss_dssp HHHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-SEEEE
T ss_pred CHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCCEeeh
Confidence 57899999999999999999 89999999999999999975
No 157
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=95.49 E-value=0.12 Score=46.27 Aligned_cols=45 Identities=13% Similarity=0.305 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHhh-cCCCEEEEecCCHHHHHHHHHcCCCEEEEcCC
Q 039466 201 PSLSWKDIEWLRSI-TNLPILIKGVLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 201 ~~~~W~dl~~lr~~-~~lPiilKGI~s~eDA~~a~~~G~dgI~VSNH 246 (263)
..++|++|+.+|+. .+.|+++-|=++++.+.+++++ +||++|+.+
T Consensus 184 ~~~d~~~l~~vr~~~~~~PvllggGvt~eNv~e~l~~-adGviVgS~ 229 (257)
T TIGR00259 184 TEVDLELLKLAKETVKDTPVLAGSGVNLENVEELLSI-ADGVIVATT 229 (257)
T ss_pred CCCCHHHHHHHHhccCCCeEEEECCCCHHHHHHHHhh-CCEEEECCC
Confidence 35799999999984 4689999999999999999998 999999875
No 158
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.44 E-value=0.22 Score=45.26 Aligned_cols=45 Identities=24% Similarity=0.634 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHhhcCCCEEEEec--CCHHHHHHHHHcCCCEEEEc
Q 039466 200 DPSLSWKDIEWLRSITNLPILIKGV--LTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 200 ~~~~~W~dl~~lr~~~~lPiilKGI--~s~eDA~~a~~~G~dgI~VS 244 (263)
.|.++|+-|+.|++.+++|+++=|- ...|+-++|++.|+.=|=|+
T Consensus 186 ~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~ 232 (284)
T PRK09195 186 EPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTIKLGICKVNVA 232 (284)
T ss_pred CCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeC
Confidence 4789999999999999999999996 68899999999999877554
No 159
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=95.41 E-value=0.18 Score=42.83 Aligned_cols=79 Identities=20% Similarity=0.107 Sum_probs=58.2
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEc-cCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCC
Q 039466 126 YKKRDMAATLVQRAERNGFMALVLT-ADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLS 204 (263)
Q Consensus 126 ~~d~~~~~~li~ra~~aG~~al~vT-vD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (263)
..|...+.+.++.+.++|++.|-+. .|.+.. | .-.++
T Consensus 7 ~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~-------------~-----------------------------~~~~~ 44 (210)
T TIGR01163 7 SADFARLGEEVKAVEEAGADWIHVDVMDGHFV-------------P-----------------------------NLTFG 44 (210)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC-------------C-----------------------------CcccC
Confidence 4577788899999999999998875 443321 0 12357
Q ss_pred HHHHHHHHhhcCCCE--EEEecCCHHHHHHHHHcCCCEEEEcCCCC
Q 039466 205 WKDIEWLRSITNLPI--LIKGVLTREDAIKAVEVGVAGIIVSNHGA 248 (263)
Q Consensus 205 W~dl~~lr~~~~lPi--ilKGI~s~eDA~~a~~~G~dgI~VSNHGG 248 (263)
.+.+++|++..+.|+ .++.-...+-++.+.++|+|+|.| |++
T Consensus 45 ~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~v--h~~ 88 (210)
T TIGR01163 45 PPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITV--HPE 88 (210)
T ss_pred HHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE--ccC
Confidence 788999998888885 356544556677888999999998 775
No 160
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=95.41 E-value=0.2 Score=46.49 Aligned_cols=141 Identities=16% Similarity=0.113 Sum_probs=81.5
Q ss_pred CcccccceeecccCCcccCCChhHHHHHHHHHHCCC-ceeecCC----CC--ccHHHHHHhccc--------cccCHHHH
Q 039466 68 DYKISASIIIAPTGLHKLANPEGEVATARAAASCNT-IMVLSFT----SS--CSIEEVAASCNA--------AYKKRDMA 132 (263)
Q Consensus 68 G~~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi-~~~lss~----s~--~sieeV~~~~~~--------~~~d~~~~ 132 (263)
+.....|+++|||.+.. +...=+.|.+.|. .++.+-. +. ....+.....+. .-.|++..
T Consensus 6 ~~~~~~~~~lAPM~g~t------d~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~g~~p~~~ 79 (333)
T PRK11815 6 SKLPSRRFSVAPMMDWT------DRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLGGSDPADL 79 (333)
T ss_pred ccCCCCCEEEeCCCCCc------CHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEeCCCHHHH
Confidence 45567799999998642 2223334566664 2222211 11 111222222221 23688888
Q ss_pred HHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHH
Q 039466 133 ATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLR 212 (263)
Q Consensus 133 ~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr 212 (263)
.+..++++++||+.|-|+..+|..-.|. .++. ..+ ..++.+.-+-++.++
T Consensus 80 ~~aA~~~~~~g~d~IdlN~gCP~~~v~~----~~~G------------------------s~L--~~~p~~~~eiv~avr 129 (333)
T PRK11815 80 AEAAKLAEDWGYDEINLNVGCPSDRVQN----GRFG------------------------ACL--MAEPELVADCVKAMK 129 (333)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCHHHccC----CCee------------------------eHH--hcCHHHHHHHHHHHH
Confidence 8889999999999999999887521110 0000 000 112333345688899
Q ss_pred hhcCCCEEEE---ecC---CHHH----HHHHHHcCCCEEEEc
Q 039466 213 SITNLPILIK---GVL---TRED----AIKAVEVGVAGIIVS 244 (263)
Q Consensus 213 ~~~~lPiilK---GI~---s~eD----A~~a~~~G~dgI~VS 244 (263)
+.++.||.+| |+. +.++ ++.+.+.|+++|.|+
T Consensus 130 ~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh 171 (333)
T PRK11815 130 DAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVH 171 (333)
T ss_pred HHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEc
Confidence 9999999999 332 2223 455667999999987
No 161
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=95.32 E-value=0.23 Score=40.78 Aligned_cols=52 Identities=25% Similarity=0.194 Sum_probs=37.3
Q ss_pred CHHHHHHHHhhc-CCCEEEEecCCHHHHHH-HHHcCCCEEEEcCCCCCCCCCch
Q 039466 204 SWKDIEWLRSIT-NLPILIKGVLTREDAIK-AVEVGVAGIIVSNHGARQLDYTP 255 (263)
Q Consensus 204 ~W~dl~~lr~~~-~lPiilKGI~s~eDA~~-a~~~G~dgI~VSNHGGRqlD~~~ 255 (263)
.++.++++++.+ +.|+++|-....+.... +.+.|+|.|.++|+.+.+....+
T Consensus 101 ~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~ 154 (200)
T cd04722 101 DLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDA 154 (200)
T ss_pred HHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccC
Confidence 356788999988 79999996433222221 57899999999999887665544
No 162
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=95.24 E-value=0.19 Score=45.62 Aligned_cols=169 Identities=15% Similarity=0.210 Sum_probs=100.0
Q ss_pred cccccceeecccCCcccCCChhHH---H-HHHHHHHCCCceeecCCCCccHHHHHHhcc-c------------cccCHHH
Q 039466 69 YKISASIIIAPTGLHKLANPEGEV---A-TARAAASCNTIMVLSFTSSCSIEEVAASCN-A------------AYKKRDM 131 (263)
Q Consensus 69 ~~~~~Pi~iaP~~~~~l~~~~ge~---a-~AraA~~~gi~~~lss~s~~sieeV~~~~~-~------------~~~d~~~ 131 (263)
++...|++|.-.-+..-+ -.|.. . +-..|++.++|.+|-.-=..+.+.+.++-. + +-.|-..
T Consensus 39 ~e~~sPvIiq~S~g~~~y-~gg~~~~~~~v~~~a~~~~vPV~lHlDHg~~~~~~~~ai~~GFsSvMiDgS~~~~eENi~~ 117 (286)
T COG0191 39 EEEKSPVIIQFSEGAAKY-AGGADSLAHMVKALAEKYGVPVALHLDHGASFEDCKQAIRAGFSSVMIDGSHLPFEENIAI 117 (286)
T ss_pred HHhCCCEEEEecccHHHH-hchHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHhcCCceEEecCCcCCHHHHHHH
Confidence 345689998765443221 12222 3 334577799999998766668898877653 3 1235567
Q ss_pred HHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhh-----hhhh-hhhhhhhcc-ccCCCCCCCccHHHHHHHhcCCCCC
Q 039466 132 AATLVQRAERNGFMALVLTADTPRLDRREADIKNK-----MIAQ-QLKNLEGLL-STKVTSDTGSNLEAYAKETMDPSLS 204 (263)
Q Consensus 132 ~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~-----~~~p-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (263)
+++.+++|.+.|.. |-.-.-..|.-|.+.... +.-| ....+...- -..+..+-++.++.|.. ..+.++
T Consensus 118 tkevv~~ah~~gvs---VEaElG~~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~--~~p~L~ 192 (286)
T COG0191 118 TKEVVEFAHAYGVS---VEAELGTLGGEEDGVVLYTDPADLTDPEEALEFVERTGIDALAAAIGNVHGVYKP--GNPKLD 192 (286)
T ss_pred HHHHHHHHHHcCCc---EEEEeccccCccCCcccccchhhhCCHHHHHHHHhccCcceeeeeccccccCCCC--CCCCCC
Confidence 88999999988732 333333445555432110 1111 111111000 00011111222333321 346789
Q ss_pred HHHHHHHHhhcCCCEEEEec--CCHHHHHHHHHcCCCEEEE
Q 039466 205 WKDIEWLRSITNLPILIKGV--LTREDAIKAVEVGVAGIIV 243 (263)
Q Consensus 205 W~dl~~lr~~~~lPiilKGI--~s~eDA~~a~~~G~dgI~V 243 (263)
.+.|+++++.+++|+|+-|= .+.+|.++|+++|+.=|=|
T Consensus 193 ~~~L~~i~~~~~~PlVlHGgSGip~~eI~~aI~~GV~KvNi 233 (286)
T COG0191 193 FDRLKEIQEAVSLPLVLHGGSGIPDEEIREAIKLGVAKVNI 233 (286)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHhCceEEee
Confidence 99999999999999999995 7999999999999987744
No 163
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=95.24 E-value=0.36 Score=41.12 Aligned_cols=43 Identities=26% Similarity=0.451 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCCEEEEc
Q 039466 202 SLSWKDIEWLRSITN-LPILIKGVLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~-lPiilKGI~s~eDA~~a~~~G~dgI~VS 244 (263)
...|+.++++++..+ .||++=|=.+++++..+.++|++||+++
T Consensus 145 ~~g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~Ga~gv~~g 188 (212)
T PRK00043 145 PQGLEGLREIRAAVGDIPIVAIGGITPENAPEVLEAGADGVAVV 188 (212)
T ss_pred CCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEe
Confidence 446999999999988 9999998458999999999999999985
No 164
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=95.13 E-value=0.19 Score=43.50 Aligned_cols=71 Identities=30% Similarity=0.300 Sum_probs=53.6
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHH
Q 039466 127 KKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWK 206 (263)
Q Consensus 127 ~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 206 (263)
.+.+....+++.+.+.|++.+-||.++|. ..+
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~t~~------------------------------------------------a~~ 48 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLRTPV------------------------------------------------ALD 48 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCcc------------------------------------------------HHH
Confidence 35667778888888999999999998642 113
Q ss_pred HHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcCC
Q 039466 207 DIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 207 dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSNH 246 (263)
-|+++++..+-=+|.=| |+++|+++.|+++|++-| ||-|
T Consensus 49 ~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi-vsP~ 88 (204)
T TIGR01182 49 AIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI-VSPG 88 (204)
T ss_pred HHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE-ECCC
Confidence 47778777653344455 899999999999999977 6654
No 165
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.11 E-value=0.074 Score=49.72 Aligned_cols=40 Identities=25% Similarity=0.450 Sum_probs=35.1
Q ss_pred CHHHHHHHHhhc--CCCEEEEe-cCCHHHHHHHHHcCCCEEEE
Q 039466 204 SWKDIEWLRSIT--NLPILIKG-VLTREDAIKAVEVGVAGIIV 243 (263)
Q Consensus 204 ~W~dl~~lr~~~--~lPiilKG-I~s~eDA~~a~~~G~dgI~V 243 (263)
.|+.++++++.+ ++|||+-| |.++++|.++++.|+|.|.+
T Consensus 270 ~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~ 312 (353)
T cd04735 270 NQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAI 312 (353)
T ss_pred hHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHH
Confidence 577788888887 78999998 89999999999999998865
No 166
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=95.10 E-value=0.46 Score=43.31 Aligned_cols=146 Identities=19% Similarity=0.261 Sum_probs=84.3
Q ss_pred HHHHH-HHHCC--CceeecCCCCccHHHHHHhcc-c------------cccCHHHHHHHHHHHHHcCCCEEEEccCCCCC
Q 039466 93 ATARA-AASCN--TIMVLSFTSSCSIEEVAASCN-A------------AYKKRDMAATLVQRAERNGFMALVLTADTPRL 156 (263)
Q Consensus 93 a~Ara-A~~~g--i~~~lss~s~~sieeV~~~~~-~------------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~ 156 (263)
.+++. |++.. +|.+|---=..++|.|.++-. | +-.|...+++.++.|.+.|+.. -.-.-..
T Consensus 65 ~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~V---EaElG~v 141 (286)
T PRK08610 65 KMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSV---EAELGTV 141 (286)
T ss_pred HHHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE---EEEEecc
Confidence 44444 55565 788887665668888876542 2 2345667889999998887432 1111111
Q ss_pred cchHHHH---hhhhhhh-hhhhhhhc-cccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEec--CCHHH
Q 039466 157 DRREADI---KNKMIAQ-QLKNLEGL-LSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGV--LTRED 229 (263)
Q Consensus 157 g~R~~d~---r~~~~~p-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKGI--~s~eD 229 (263)
|.-+.+. ...|+-| ....|... ....+....++.++.|. ..|.++|+.|++|++.+++|+++=|- ...|+
T Consensus 142 gg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~---~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~ 218 (286)
T PRK08610 142 GGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHGPYK---GEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKD 218 (286)
T ss_pred CCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccccccC---CCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHH
Confidence 1111110 0113333 11111100 00001111122333332 35789999999999999999999997 67799
Q ss_pred HHHHHHcCCCEEEEc
Q 039466 230 AIKAVEVGVAGIIVS 244 (263)
Q Consensus 230 A~~a~~~G~dgI~VS 244 (263)
.++|++.|+.=|=|+
T Consensus 219 ~~~ai~~GI~KiNi~ 233 (286)
T PRK08610 219 IQKAIPFGTAKINVN 233 (286)
T ss_pred HHHHHHCCCeEEEec
Confidence 999999999877554
No 167
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=95.09 E-value=0.35 Score=45.06 Aligned_cols=145 Identities=15% Similarity=0.156 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHCCCceeecCCCCccHHHHHHhccc-cccCHH-HHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhh
Q 039466 90 GEVATARAAASCNTIMVLSFTSSCSIEEVAASCNA-AYKKRD-MAATLVQRAERNGFMALVLTADTPRLDRREADIKNKM 167 (263)
Q Consensus 90 ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~-~~~d~~-~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~ 167 (263)
|-..+.++|++.|++++..-....+++.+.+..+- ...-+. ....+++.+-+.|. .|-+.....+. ..++.+..
T Consensus 145 gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~vd~lqIgAr~~~N~~LL~~va~~~k---PViLk~G~~~t-i~E~l~A~ 220 (335)
T PRK08673 145 GLKLLAEAREETGLPIVTEVMDPRDVELVAEYVDILQIGARNMQNFDLLKEVGKTNK---PVLLKRGMSAT-IEEWLMAA 220 (335)
T ss_pred HHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhCCeEEECcccccCHHHHHHHHcCCC---cEEEeCCCCCC-HHHHHHHH
Confidence 33368888999999998887877788888766431 111111 13456666655553 22223222111 11222111
Q ss_pred hhhhhhhhhhccccCCCCC-CCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEE---ec----CCHHHHHHHHHcCCC
Q 039466 168 IAQQLKNLEGLLSTKVTSD-TGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIK---GV----LTREDAIKAVEVGVA 239 (263)
Q Consensus 168 ~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilK---GI----~s~eDA~~a~~~G~d 239 (263)
.. +. ..+|-+-. -.-+. +.+.+.....+++..+..+++.+++|||+- +. +-+.-++.|+.+|||
T Consensus 221 e~-----i~--~~GN~~viL~erG~-~tf~~~~~~~ldl~ai~~lk~~~~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAd 292 (335)
T PRK08673 221 EY-----IL--AEGNPNVILCERGI-RTFETATRNTLDLSAVPVIKKLTHLPVIVDPSHATGKRDLVEPLALAAVAAGAD 292 (335)
T ss_pred HH-----HH--HcCCCeEEEEECCC-CCCCCcChhhhhHHHHHHHHHhcCCCEEEeCCCCCccccchHHHHHHHHHhCCC
Confidence 10 00 00000000 00000 001111234568889999999999999875 12 346789999999999
Q ss_pred EEEEcCC
Q 039466 240 GIIVSNH 246 (263)
Q Consensus 240 gI~VSNH 246 (263)
|+++=-|
T Consensus 293 GliIE~H 299 (335)
T PRK08673 293 GLIVEVH 299 (335)
T ss_pred EEEEEec
Confidence 9999877
No 168
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=95.08 E-value=0.5 Score=43.01 Aligned_cols=146 Identities=19% Similarity=0.286 Sum_probs=84.6
Q ss_pred HHHHH-HHHCC--CceeecCCCCccHHHHHHhcc-c------------cccCHHHHHHHHHHHHHcCCCEEEEccCCCCC
Q 039466 93 ATARA-AASCN--TIMVLSFTSSCSIEEVAASCN-A------------AYKKRDMAATLVQRAERNGFMALVLTADTPRL 156 (263)
Q Consensus 93 a~Ara-A~~~g--i~~~lss~s~~sieeV~~~~~-~------------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~ 156 (263)
.+++. |++.+ +|.+|---=..++|.|.++-. | +-.|.+.+++.++.|++.|+.. -.-.-..
T Consensus 65 ~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~V---EaElG~i 141 (285)
T PRK07709 65 AMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSV---EAELGTV 141 (285)
T ss_pred HHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE---EEEEecc
Confidence 45554 44455 788887666668888876542 2 2346678899999999887532 1111111
Q ss_pred cchHHHH---hhhhhhh-hhhhhhh-ccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEec--CCHHH
Q 039466 157 DRREADI---KNKMIAQ-QLKNLEG-LLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGV--LTRED 229 (263)
Q Consensus 157 g~R~~d~---r~~~~~p-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKGI--~s~eD 229 (263)
|.-+.+. ...|+-| ....|.. ..-..+...-++.++.|. ..+.++|+.|+.|++.+++|+++=|- ...|+
T Consensus 142 gg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~---~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~ 218 (285)
T PRK07709 142 GGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYK---GEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTAD 218 (285)
T ss_pred CCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeecccccCcC---CCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHH
Confidence 1111100 0113333 1111110 000000111122233332 35789999999999999999999997 68899
Q ss_pred HHHHHHcCCCEEEEc
Q 039466 230 AIKAVEVGVAGIIVS 244 (263)
Q Consensus 230 A~~a~~~G~dgI~VS 244 (263)
.++|+++|+.=|=|.
T Consensus 219 ~~~ai~~Gi~KiNi~ 233 (285)
T PRK07709 219 IEKAISLGTSKINVN 233 (285)
T ss_pred HHHHHHcCCeEEEeC
Confidence 999999999877554
No 169
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=95.05 E-value=0.42 Score=41.34 Aligned_cols=44 Identities=25% Similarity=0.392 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHhhc--CCCEEEEecCCHHHHHHHHHcCCCEEEEcC
Q 039466 202 SLSWKDIEWLRSIT--NLPILIKGVLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 202 ~~~W~dl~~lr~~~--~lPiilKGI~s~eDA~~a~~~G~dgI~VSN 245 (263)
.+.++.++++++.. ++|++.=|=.+++++...+++|+++|.|+.
T Consensus 135 ~~G~~~l~~l~~~~~~~ipvvaiGGI~~~n~~~~~~aGa~~vav~s 180 (206)
T PRK09140 135 QLGPAGIKALRAVLPPDVPVFAVGGVTPENLAPYLAAGAAGFGLGS 180 (206)
T ss_pred CCCHHHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHCCCeEEEEeh
Confidence 35688899999887 499999994499999999999999998653
No 170
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=95.03 E-value=1.4 Score=36.58 Aligned_cols=43 Identities=28% Similarity=0.448 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHhhc--CCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 202 SLSWKDIEWLRSIT--NLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 202 ~~~W~dl~~lr~~~--~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
..+|+.++.+++.. ++||++=| +.+++++..++..|++|+++|
T Consensus 156 ~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 156 GATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred CCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 35889999999887 56888877 788999999999999999875
No 171
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=95.02 E-value=0.12 Score=48.89 Aligned_cols=82 Identities=16% Similarity=0.170 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHH
Q 039466 130 DMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIE 209 (263)
Q Consensus 130 ~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~ 209 (263)
+.+.+++++.+++|++.|-|+.-... .. .+..| . ....+...|+..+
T Consensus 252 e~~~~~~~~l~~~gvD~l~vs~g~~~--~~------~~~~~---------------~----------~~~~~~~~~~~~~ 298 (382)
T cd02931 252 EEGLKAAKILEEAGYDALDVDAGSYD--AW------YWNHP---------------P----------MYQKKGMYLPYCK 298 (382)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCCCCc--cc------ccccC---------------C----------ccCCcchhHHHHH
Confidence 55678889999999988887654311 00 00000 0 0011223467789
Q ss_pred HHHhhcCCCEEEEe-cCCHHHHHHHHHcC-CCEEEEc
Q 039466 210 WLRSITNLPILIKG-VLTREDAIKAVEVG-VAGIIVS 244 (263)
Q Consensus 210 ~lr~~~~lPiilKG-I~s~eDA~~a~~~G-~dgI~VS 244 (263)
.+|+.+++|||+-| |.+++++..+++.| +|.|.++
T Consensus 299 ~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~g 335 (382)
T cd02931 299 ALKEVVDVPVIMAGRMEDPELASEAINEGIADMISLG 335 (382)
T ss_pred HHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeec
Confidence 99999999999999 89999999999976 9998763
No 172
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=94.91 E-value=0.14 Score=44.92 Aligned_cols=138 Identities=19% Similarity=0.231 Sum_probs=86.0
Q ss_pred HHHHHHHHCCCceeecCCCCccHHHHHHhcc---c-------cccCHHHHHHHHHHHHHcCCCEEEEccCCCCC------
Q 039466 93 ATARAAASCNTIMVLSFTSSCSIEEVAASCN---A-------AYKKRDMAATLVQRAERNGFMALVLTADTPRL------ 156 (263)
Q Consensus 93 a~AraA~~~gi~~~lss~s~~sieeV~~~~~---~-------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~------ 156 (263)
.+.+.+++.++|..++-. .+++|++.+.-. . .+.|++...++.++ -|-+.+++.+|.-..
T Consensus 64 ~i~~i~~~~~~~i~vgGG-Irs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~---~g~~~ivvslD~~~g~~v~~~ 139 (229)
T PF00977_consen 64 LIKEIAKETGIPIQVGGG-IRSIEDAERLLDAGADRVVIGTEALEDPELLEELAER---YGSQRIVVSLDARDGYKVATN 139 (229)
T ss_dssp HHHHHHHHSSSEEEEESS-E-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHH---HGGGGEEEEEEEEETEEEEET
T ss_pred HHHHHHhcCCccEEEeCc-cCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHH---cCcccEEEEEEeeeceEEEec
Confidence 456778888999999854 578888765432 1 56899998887775 477788888885432
Q ss_pred cchHHHHhhhhhhh-hhhhh--hhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHH
Q 039466 157 DRREADIKNKMIAQ-QLKNL--EGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTREDAIK 232 (263)
Q Consensus 157 g~R~~d~r~~~~~p-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~ 232 (263)
||++..-.+-..+. .+..+ ..+-..++...+ ....++++-++.+++.+++|+|.-| |-+.+|.++
T Consensus 140 gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dG-----------t~~G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~ 208 (229)
T PF00977_consen 140 GWQESSGIDLEEFAKRLEELGAGEIILTDIDRDG-----------TMQGPDLELLKQLAEAVNIPVIASGGVRSLEDLRE 208 (229)
T ss_dssp TTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTT-----------TSSS--HHHHHHHHHHHSSEEEEESS--SHHHHHH
T ss_pred CccccCCcCHHHHHHHHHhcCCcEEEEeeccccC-----------CcCCCCHHHHHHHHHHcCCCEEEecCCCCHHHHHH
Confidence 66543110000111 00111 000001111000 0123578889999999999999999 999999999
Q ss_pred HHHcCCCEEEEcC
Q 039466 233 AVEVGVAGIIVSN 245 (263)
Q Consensus 233 a~~~G~dgI~VSN 245 (263)
+.+.|++|++|++
T Consensus 209 l~~~G~~gvivg~ 221 (229)
T PF00977_consen 209 LKKAGIDGVIVGS 221 (229)
T ss_dssp HHHTTECEEEESH
T ss_pred HHHCCCcEEEEeh
Confidence 9999999999975
No 173
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=94.90 E-value=0.29 Score=44.63 Aligned_cols=44 Identities=27% Similarity=0.598 Sum_probs=39.1
Q ss_pred CC-CCHHHHHHHHhhcCCCEEEEec--CCHHHHHHHHHcCCCEEEEc
Q 039466 201 PS-LSWKDIEWLRSITNLPILIKGV--LTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 201 ~~-~~W~dl~~lr~~~~lPiilKGI--~s~eDA~~a~~~G~dgI~VS 244 (263)
+. ++|+-|++|++.+++|+++=|- .+.|+.++|+++|+.=|=|+
T Consensus 190 p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 236 (288)
T TIGR00167 190 PKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEIKKAISLGVVKVNID 236 (288)
T ss_pred CCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEcC
Confidence 56 8999999999999999999997 67889999999999877554
No 174
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=94.87 E-value=0.4 Score=44.24 Aligned_cols=141 Identities=12% Similarity=0.070 Sum_probs=82.7
Q ss_pred CcccccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCCCCc-cHH---HH---HHhc-c--c-----c-ccCHHH
Q 039466 68 DYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSC-SIE---EV---AASC-N--A-----A-YKKRDM 131 (263)
Q Consensus 68 G~~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~-sie---eV---~~~~-~--~-----~-~~d~~~ 131 (263)
+.++..|+++|||++. .+...-+.|.+.|..++.+-.-+. ++. +. .... + . + -.|++.
T Consensus 5 ~~~~~~~~~lAPM~g~------td~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g~~~~~ 78 (321)
T PRK10415 5 QYQLRNRLIAAPMAGI------TDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKE 78 (321)
T ss_pred CccCCCCEEecCCCCC------CcHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEeCCCHHH
Confidence 3467789999999763 345566778888866544332211 110 11 1111 1 1 2 357788
Q ss_pred HHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHH
Q 039466 132 AATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWL 211 (263)
Q Consensus 132 ~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~l 211 (263)
..+.++++++.||+.+-+..-+|+. + -.+.+. +..+ ..++.+--+-++.+
T Consensus 79 ~~~aa~~~~~~g~d~IdlN~gCP~~-~---v~~~g~------------------------Gs~l--l~~p~~~~eiv~av 128 (321)
T PRK10415 79 MADAARINVESGAQIIDINMGCPAK-K---VNRKLA------------------------GSAL--LQYPDLVKSILTEV 128 (321)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCHH-H---HcCCCc------------------------ccHH--hcCHHHHHHHHHHH
Confidence 8788888888999999988888861 0 000000 0000 01233333457888
Q ss_pred HhhcCCCEEEEe---c-C----CHHHHHHHHHcCCCEEEEc
Q 039466 212 RSITNLPILIKG---V-L----TREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 212 r~~~~lPiilKG---I-~----s~eDA~~a~~~G~dgI~VS 244 (263)
++.++.||.+|= . . ..+=|+.+.++|+++|.|.
T Consensus 129 ~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh 169 (321)
T PRK10415 129 VNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIH 169 (321)
T ss_pred HHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEe
Confidence 888999999883 1 1 1233455667999999984
No 175
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=94.86 E-value=0.7 Score=40.71 Aligned_cols=132 Identities=15% Similarity=0.133 Sum_probs=76.3
Q ss_pred HHHHHHHHCCCceeecCCCCccHHHHHHhcc---c-------cccCHHHHHHHHHHHHHcCCCEEEEccCCC------CC
Q 039466 93 ATARAAASCNTIMVLSFTSSCSIEEVAASCN---A-------AYKKRDMAATLVQRAERNGFMALVLTADTP------RL 156 (263)
Q Consensus 93 a~AraA~~~gi~~~lss~s~~sieeV~~~~~---~-------~~~d~~~~~~li~ra~~aG~~al~vTvD~~------~~ 156 (263)
.+.+.+++.-.|+.++- ...++|++.+.-. . .++|++..+++.+ +-|-..+++.+|.. ..
T Consensus 64 ~i~~i~~~~~~~v~vGG-GIrs~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~---~~g~~~ivvslD~~~~~~v~~~ 139 (232)
T PRK13586 64 YIKEISKIGFDWIQVGG-GIRDIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVR---EIGSNRVLVSIDYDNTKRVLIR 139 (232)
T ss_pred HHHHHHhhCCCCEEEeC-CcCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHH---HhCCCCEEEEEEcCCCCEEEcc
Confidence 34444553434777763 4567787754321 1 4678877666544 45666799999983 12
Q ss_pred cchHHHHhhhhhhh-hhhhhhhc-----cccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHH
Q 039466 157 DRREADIKNKMIAQ-QLKNLEGL-----LSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTRED 229 (263)
Q Consensus 157 g~R~~d~r~~~~~p-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eD 229 (263)
||.+. ...+. -.+.+... -..++...+ ....++.+-++.+++. ..|+|.-| |-+.+|
T Consensus 140 gw~~~----~~~~~e~~~~l~~~g~~~ii~tdI~~dG-----------t~~G~d~el~~~~~~~-~~~viasGGv~s~~D 203 (232)
T PRK13586 140 GWKEK----SMEVIDGIKKVNELELLGIIFTYISNEG-----------TTKGIDYNVKDYARLI-RGLKEYAGGVSSDAD 203 (232)
T ss_pred CCeeC----CCCHHHHHHHHHhcCCCEEEEecccccc-----------cCcCcCHHHHHHHHhC-CCCEEEECCCCCHHH
Confidence 55431 11111 01111110 000111000 0123567778888876 56788877 999999
Q ss_pred HHHHHHcCCCEEEEc
Q 039466 230 AIKAVEVGVAGIIVS 244 (263)
Q Consensus 230 A~~a~~~G~dgI~VS 244 (263)
.+++.+.|++|++|.
T Consensus 204 l~~l~~~G~~gvivg 218 (232)
T PRK13586 204 LEYLKNVGFDYIIVG 218 (232)
T ss_pred HHHHHHCCCCEEEEe
Confidence 999999999999994
No 176
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=94.80 E-value=0.26 Score=46.84 Aligned_cols=43 Identities=23% Similarity=0.377 Sum_probs=35.3
Q ss_pred CCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 203 LSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 203 ~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
+--+-|+|+++..+-.=|+-| |.+.+.|+.++++||||+=|.=
T Consensus 278 ~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGM 321 (503)
T KOG2550|consen 278 YQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGM 321 (503)
T ss_pred hHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEecc
Confidence 344679999999875555556 9999999999999999998753
No 177
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=94.79 E-value=0.25 Score=43.10 Aligned_cols=43 Identities=21% Similarity=0.313 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 202 SLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
..+++.++.+++.+++||++=| |-+.+|++.+.+.|+++|++.
T Consensus 60 ~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg 103 (232)
T TIGR03572 60 EPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSIN 103 (232)
T ss_pred CCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 4577889999999999999887 999999999999999999886
No 178
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=94.75 E-value=0.69 Score=41.66 Aligned_cols=154 Identities=14% Similarity=0.184 Sum_probs=83.0
Q ss_pred ccCCcccCCChhHHHHHHHHHHCCCceeecCCCCccHHHHHHhccc-cccCHHH-HHHHHHHHHHcCCCEEEEccCCCCC
Q 039466 79 PTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNA-AYKKRDM-AATLVQRAERNGFMALVLTADTPRL 156 (263)
Q Consensus 79 P~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~-~~~d~~~-~~~li~ra~~aG~~al~vTvD~~~~ 156 (263)
|-+..++. .++-..+.+.|++.|++++..-....+++.+.+..+- ...-+.. ...+++.+.+.| ..|-+.....
T Consensus 69 ~~s~~G~g-~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~vd~~kIga~~~~n~~LL~~~a~~g---kPV~lk~G~~ 144 (266)
T PRK13398 69 PYSFQGLG-EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADYADMLQIGSRNMQNFELLKEVGKTK---KPILLKRGMS 144 (266)
T ss_pred CCccCCcH-HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHhCCEEEECcccccCHHHHHHHhcCC---CcEEEeCCCC
Confidence 33444443 4555578888889999888877777777777765331 1112211 235666664444 2333343332
Q ss_pred cchHHHHhhhhhhhhhhhhh--hccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEE-e-cCC-----H
Q 039466 157 DRREADIKNKMIAQQLKNLE--GLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIK-G-VLT-----R 227 (263)
Q Consensus 157 g~R~~d~r~~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilK-G-I~s-----~ 227 (263)
+. ..++.+.... +.... .+.. +.-+. +.........+++.-+..+++.+++||++- . ... +
T Consensus 145 ~s-~~e~~~A~e~--i~~~Gn~~i~L--~~rG~-----~t~~~Y~~~~vdl~~i~~lk~~~~~pV~~D~sHs~G~~~~v~ 214 (266)
T PRK13398 145 AT-LEEWLYAAEY--IMSEGNENVVL--CERGI-----RTFETYTRNTLDLAAVAVIKELSHLPIIVDPSHATGRRELVI 214 (266)
T ss_pred CC-HHHHHHHHHH--HHhcCCCeEEE--EECCC-----CCCCCCCHHHHHHHHHHHHHhccCCCEEEeCCCcccchhhHH
Confidence 11 1122211110 00000 0000 00000 001111123457888999999999999994 2 223 8
Q ss_pred HHHHHHHHcCCCEEEEcCC
Q 039466 228 EDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 228 eDA~~a~~~G~dgI~VSNH 246 (263)
..++.|+.+|++|+++=-|
T Consensus 215 ~~~~aAva~Ga~Gl~iE~H 233 (266)
T PRK13398 215 PMAKAAIAAGADGLMIEVH 233 (266)
T ss_pred HHHHHHHHcCCCEEEEecc
Confidence 8899999999999999777
No 179
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=94.68 E-value=0.29 Score=47.32 Aligned_cols=38 Identities=16% Similarity=0.440 Sum_probs=32.3
Q ss_pred HHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 208 IEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 208 l~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
+..+.+.+++|||.-| |.++.|+.+|+.+||++++|.+
T Consensus 319 ~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~ 357 (450)
T TIGR01302 319 VAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGS 357 (450)
T ss_pred HHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 3344456789999988 9999999999999999999865
No 180
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=94.62 E-value=0.066 Score=49.73 Aligned_cols=40 Identities=23% Similarity=0.387 Sum_probs=37.1
Q ss_pred CHHHHHHHHhh-cCCCEEEEe-cCCHHHHHHHHHcCCCEEEE
Q 039466 204 SWKDIEWLRSI-TNLPILIKG-VLTREDAIKAVEVGVAGIIV 243 (263)
Q Consensus 204 ~W~dl~~lr~~-~~lPiilKG-I~s~eDA~~a~~~G~dgI~V 243 (263)
++++|+.+|+. +++||+-|- |.++-....|..+|||+|.+
T Consensus 168 s~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLL 209 (338)
T PLN02460 168 SFENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILL 209 (338)
T ss_pred CHHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHH
Confidence 57999999998 999999999 89999999999999999853
No 181
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=94.62 E-value=0.45 Score=41.80 Aligned_cols=127 Identities=16% Similarity=0.220 Sum_probs=70.9
Q ss_pred HHHHHHHCCCceeecCCCCccHHHHHHhcc-c---------cccCHHHHHHHHHHHHHcCCCEEEEccCCCC-----Ccc
Q 039466 94 TARAAASCNTIMVLSFTSSCSIEEVAASCN-A---------AYKKRDMAATLVQRAERNGFMALVLTADTPR-----LDR 158 (263)
Q Consensus 94 ~AraA~~~gi~~~lss~s~~sieeV~~~~~-~---------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~-----~g~ 158 (263)
+.+.+++.++|.++| ....++|+|.+... + .+ |++..+++.++ -| + +++.+|... .||
T Consensus 65 i~~i~~~~~~pv~~g-GGIrs~edv~~l~~~G~~~vivGtaa~-~~~~l~~~~~~---~g-~-ivvslD~~~g~v~~~gw 137 (228)
T PRK04128 65 VKNIIRETGLKVQVG-GGLRTYESIKDAYEIGVENVIIGTKAF-DLEFLEKVTSE---FE-G-ITVSLDVKGGRIAVKGW 137 (228)
T ss_pred HHHHHhhCCCCEEEc-CCCCCHHHHHHHHHCCCCEEEECchhc-CHHHHHHHHHH---cC-C-EEEEEEccCCeEecCCC
Confidence 455566688888876 44578898865321 1 34 67666655543 35 3 999999732 244
Q ss_pred hHHHHhhhhhhhhhhhhhh----ccccCCCCCCCccHHHHHHHhcCCCC-CHHHHHHHHhhcCCCEEEEe-cCCHHHHHH
Q 039466 159 READIKNKMIAQQLKNLEG----LLSTKVTSDTGSNLEAYAKETMDPSL-SWKDIEWLRSITNLPILIKG-VLTREDAIK 232 (263)
Q Consensus 159 R~~d~r~~~~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~W~dl~~lr~~~~lPiilKG-I~s~eDA~~ 232 (263)
++..-.....+ .+.+.. +-..++.. ++.. ..+++... ..++|||.-| |-+.||.++
T Consensus 138 ~~~~~~~~~~~--~~~~~~~~~~ii~t~i~~--------------dGt~~G~d~l~~~--~~~~pviasGGv~~~~Dl~~ 199 (228)
T PRK04128 138 LEESSIKVEDA--YEMLKNYVNRFIYTSIER--------------DGTLTGIEEIERF--WGDEEFIYAGGVSSAEDVKK 199 (228)
T ss_pred eEcCCCCHHHH--HHHHHHHhCEEEEEeccc--------------hhcccCHHHHHHh--cCCCCEEEECCCCCHHHHHH
Confidence 43211110110 011110 00011110 1111 11222222 2579999999 999999999
Q ss_pred HHHcCCCEEEEcC
Q 039466 233 AVEVGVAGIIVSN 245 (263)
Q Consensus 233 a~~~G~dgI~VSN 245 (263)
+.+.|++|++|+.
T Consensus 200 l~~~g~~gvivg~ 212 (228)
T PRK04128 200 LAEIGFSGVIIGK 212 (228)
T ss_pred HHHCCCCEEEEEh
Confidence 9999999999965
No 182
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=94.61 E-value=0.21 Score=46.67 Aligned_cols=45 Identities=9% Similarity=0.237 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEEcC
Q 039466 201 PSLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 201 ~~~~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~VSN 245 (263)
....|+.++|+++..++|++.=|=.+++++..+.++|++||.|++
T Consensus 279 ~~~Gle~l~~~~~~~~iPv~AiGGI~~~ni~~l~~~Ga~gVAvis 323 (347)
T PRK02615 279 APAGLEYLKYAAKEAPIPWFAIGGIDKSNIPEVLQAGAKRVAVVR 323 (347)
T ss_pred CCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCcEEEEeH
Confidence 457899999999999999999995589999999999999999875
No 183
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.55 E-value=0.35 Score=47.18 Aligned_cols=41 Identities=12% Similarity=0.213 Sum_probs=34.0
Q ss_pred HHHHHHHHh---hcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 205 WKDIEWLRS---ITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 205 W~dl~~lr~---~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
+.-+.++.+ .+++|||.-| |.++.|+.+|+.+||++++|.+
T Consensus 316 ~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g~ 360 (479)
T PRK07807 316 FSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIGS 360 (479)
T ss_pred HHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeeccH
Confidence 344444444 6789999999 9999999999999999999864
No 184
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=94.55 E-value=0.31 Score=42.45 Aligned_cols=44 Identities=25% Similarity=0.537 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEEc
Q 039466 201 PSLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 201 ~~~~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~VS 244 (263)
+...|+-++|+++..++|++.=|=++++.+....++|++||-|.
T Consensus 143 ~~~G~~~l~~~~~~~~iP~vAIGGi~~~nv~~v~~~Ga~gVAvv 186 (211)
T COG0352 143 PPLGLEGLREIRELVNIPVVAIGGINLENVPEVLEAGADGVAVV 186 (211)
T ss_pred CccCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHhCCCeEEeh
Confidence 56789999999999999999999899999999999999999774
No 185
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=94.54 E-value=0.044 Score=48.95 Aligned_cols=39 Identities=23% Similarity=0.480 Sum_probs=36.2
Q ss_pred CHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEE
Q 039466 204 SWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGII 242 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~ 242 (263)
+.++|+.+|+...+||+.|- |.++-....|..+|+|+|.
T Consensus 95 s~e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavL 134 (254)
T COG0134 95 SFEDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVL 134 (254)
T ss_pred CHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHH
Confidence 45899999999999999999 8999999999999999874
No 186
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=94.52 E-value=0.18 Score=46.61 Aligned_cols=94 Identities=16% Similarity=0.257 Sum_probs=63.6
Q ss_pred cHHHHHHhccc---cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCc-chHHHHhhhhhhhhhhhhhhccccCCCCCCCc
Q 039466 114 SIEEVAASCNA---AYKKRDMAATLVQRAERNGFMALVLTADTPRLD-RREADIKNKMIAQQLKNLEGLLSTKVTSDTGS 189 (263)
Q Consensus 114 sieeV~~~~~~---~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g-~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~ 189 (263)
.+++|++..|. +-++- .+.+..+++.++|++++.|.+=.-..- -|. ..
T Consensus 127 ~i~~i~~~~p~~~vi~GnV-~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~---~~------------------------ 178 (321)
T TIGR01306 127 MIKHIKTHLPDSFVIAGNV-GTPEAVRELENAGADATKVGIGPGKVCITKI---KT------------------------ 178 (321)
T ss_pred HHHHHHHhCCCCEEEEecC-CCHHHHHHHHHcCcCEEEECCCCCcccccee---ee------------------------
Confidence 35667776654 22333 255566777789999998775422110 000 00
Q ss_pred cHHHHHHHhcCCCCCHH--HHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 190 NLEAYAKETMDPSLSWK--DIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~W~--dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
..+...|. .|.++++..++|||.-| |.+..|+.+|+.+|||++++.
T Consensus 179 ---------g~g~~~~~l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 179 ---------GFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGASMVMIG 227 (321)
T ss_pred ---------ccCCCchHHHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHcCCCEEeec
Confidence 01122454 68899999999999999 999999999999999999986
No 187
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=94.43 E-value=0.053 Score=47.77 Aligned_cols=38 Identities=24% Similarity=0.541 Sum_probs=30.9
Q ss_pred HHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcCC
Q 039466 209 EWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 209 ~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSNH 246 (263)
+..++..+.|+|+=| |-|+|.|+.++++|||.|||.|.
T Consensus 175 ~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~ 213 (230)
T PF01884_consen 175 AAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNA 213 (230)
T ss_dssp HHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCH
T ss_pred HHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCE
Confidence 344455689999998 99999999999999999999883
No 188
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=94.42 E-value=0.38 Score=41.61 Aligned_cols=68 Identities=22% Similarity=0.215 Sum_probs=53.6
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCH-
Q 039466 127 KKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSW- 205 (263)
Q Consensus 127 ~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W- 205 (263)
.+.+...++++.+.+.|++.+-||.+++. |
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~~~~~-------------------------------------------------~~ 49 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPLNSPD-------------------------------------------------PF 49 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCcc-------------------------------------------------HH
Confidence 45677788888888999999999887642 1
Q ss_pred HHHHHHHhhcCCC-EEEEe-cCCHHHHHHHHHcCCCEEEE
Q 039466 206 KDIEWLRSITNLP-ILIKG-VLTREDAIKAVEVGVAGIIV 243 (263)
Q Consensus 206 ~dl~~lr~~~~lP-iilKG-I~s~eDA~~a~~~G~dgI~V 243 (263)
+.|+.|++..+.+ +|-=| |++.|++..|+++|+++|+.
T Consensus 50 ~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivs 89 (206)
T PRK09140 50 DSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVT 89 (206)
T ss_pred HHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEEC
Confidence 2577888887755 44555 89999999999999998865
No 189
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=94.37 E-value=0.38 Score=44.28 Aligned_cols=45 Identities=18% Similarity=0.472 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHhhcCCCEEEEecC--CHH---------------------HHHHHHHcCCCEEEEc
Q 039466 200 DPSLSWKDIEWLRSITNLPILIKGVL--TRE---------------------DAIKAVEVGVAGIIVS 244 (263)
Q Consensus 200 ~~~~~W~dl~~lr~~~~lPiilKGI~--s~e---------------------DA~~a~~~G~dgI~VS 244 (263)
.|.++|+-|++|++.+++|+++=|-. ..| +-++|++.|+.=|=|.
T Consensus 188 ~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KiNi~ 255 (307)
T PRK05835 188 EPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTD 255 (307)
T ss_pred CCccCHHHHHHHHHHhCCCEEEeCCCCCchHHhhhhhhhccccccccCCCHHHHHHHHHcCceEEEeC
Confidence 46899999999999999999999963 233 8999999999877554
No 190
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=94.35 E-value=0.24 Score=44.50 Aligned_cols=193 Identities=18% Similarity=0.194 Sum_probs=109.1
Q ss_pred ccccccccCCccchHHHHHHHHhccccceeccccccccccccccccCCcccccceeeccc-------CCcccCCChhHHH
Q 039466 21 KMYYDFYAGGVENQYTLKENMEAFHGITFWPRILVDVCRIDISTSTLDYKISASIIIAPT-------GLHKLANPEGEVA 93 (263)
Q Consensus 21 ~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~~v~~~d~st~~lG~~~~~Pi~iaP~-------~~~~l~~~~ge~a 93 (263)
+...-|+..|--+-.|..+....+.+= +++-+ =||-++|=|+.=.|+ ++.+=...+.-..
T Consensus 17 ~a~i~yit~GdP~~e~s~e~i~~L~~~--------GaD~i-----ELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~le 83 (265)
T COG0159 17 GALIPYVTAGDPDLETSLEIIKTLVEA--------GADIL-----ELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLE 83 (265)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHhC--------CCCEE-----EecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHH
Confidence 345678888876655555544433211 11111 189999999998887 2221112344557
Q ss_pred HHHHHHH--CCCceeecCCCCc----cHHHH----HHhcc-c-cccC--HHHHHHHHHHHHHcCCCEEEEccCCCCCcch
Q 039466 94 TARAAAS--CNTIMVLSFTSSC----SIEEV----AASCN-A-AYKK--RDMAATLVQRAERNGFMALVLTADTPRLDRR 159 (263)
Q Consensus 94 ~AraA~~--~gi~~~lss~s~~----sieeV----~~~~~-~-~~~d--~~~~~~li~ra~~aG~~al~vTvD~~~~g~R 159 (263)
+.+...+ .++|++|=++.+. -+|+- ++++- + +..| .+...++.+.+++.|.+-+.+..=+.. -+|
T Consensus 84 l~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~-~~r 162 (265)
T COG0159 84 LVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTP-DER 162 (265)
T ss_pred HHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCC-HHH
Confidence 7777764 6778888777753 45552 22222 2 3333 245567788888999887665432211 133
Q ss_pred HHHHhh---hhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEE-EecCCHHHHHHHHH
Q 039466 160 EADIKN---KMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILI-KGVLTREDAIKAVE 235 (263)
Q Consensus 160 ~~d~r~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiil-KGI~s~eDA~~a~~ 235 (263)
-+.+.. ||-.. ... .+..+.. .......-+.++++|+.+++|+++ =||.++|+|+++.+
T Consensus 163 l~~i~~~a~GFiY~-------vs~-----~GvTG~~-----~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~ 225 (265)
T COG0159 163 LKKIAEAASGFIYY-------VSR-----MGVTGAR-----NPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAE 225 (265)
T ss_pred HHHHHHhCCCcEEE-------Eec-----ccccCCC-----cccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHH
Confidence 222211 11000 000 0000000 000111235699999999999765 67999999999999
Q ss_pred cCCCEEEEcC
Q 039466 236 VGVAGIIVSN 245 (263)
Q Consensus 236 ~G~dgI~VSN 245 (263)
+ +|||+|..
T Consensus 226 ~-ADGVIVGS 234 (265)
T COG0159 226 A-ADGVIVGS 234 (265)
T ss_pred h-CCeEEEcH
Confidence 9 99999964
No 191
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=94.31 E-value=0.37 Score=44.82 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcC-CCEEEEc
Q 039466 201 PSLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVG-VAGIIVS 244 (263)
Q Consensus 201 ~~~~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G-~dgI~VS 244 (263)
..+.|+..+.+|+.+++||++-|=.++++|+.+++.| ||.|.++
T Consensus 270 ~~~~~~~~~~ik~~~~ipvi~~G~i~~~~a~~~l~~g~~D~V~~g 314 (338)
T cd02933 270 EDQPPDFLDFLRKAFKGPLIAAGGYDAESAEAALADGKADLVAFG 314 (338)
T ss_pred cccchHHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEeC
Confidence 4568899999999999999999944599999999976 9999873
No 192
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=94.26 E-value=0.21 Score=46.62 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=34.6
Q ss_pred CHHH-HHHHHhhcCCCEEEEe-cCCHHHHHHHHHcC-CCEEEE
Q 039466 204 SWKD-IEWLRSITNLPILIKG-VLTREDAIKAVEVG-VAGIIV 243 (263)
Q Consensus 204 ~W~d-l~~lr~~~~lPiilKG-I~s~eDA~~a~~~G-~dgI~V 243 (263)
.|.+ .+.+|+.+++||+.-| |.++++++.+++.| +|.|.+
T Consensus 263 ~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~ 305 (353)
T cd02930 263 AFAWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSM 305 (353)
T ss_pred hhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHh
Confidence 4554 6899999999999998 89999999999976 998865
No 193
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=94.25 E-value=0.32 Score=47.49 Aligned_cols=116 Identities=15% Similarity=0.120 Sum_probs=69.6
Q ss_pred HHHHHHHHHCCCceeecCCC-------CccHHHHHHhccc---cccCHHHHHHHHHHHHHcCCCEEEEccCCCCC--cch
Q 039466 92 VATARAAASCNTIMVLSFTS-------SCSIEEVAASCNA---AYKKRDMAATLVQRAERNGFMALVLTADTPRL--DRR 159 (263)
Q Consensus 92 ~a~AraA~~~gi~~~lss~s-------~~sieeV~~~~~~---~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~--g~R 159 (263)
...+++..++|+-.++=..+ ...+++|++..|+ +..+- .+.+-.+++.++|++++.|.+ .|.. +-|
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v-~t~e~a~~l~~aGad~i~vg~-g~gs~~~~r 307 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNV-ATAEAARALIEAGADAVKVGI-GPGSICTTR 307 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEecc-CCHHHHHHHHHcCCCEEEECC-CCCccccce
Confidence 56677777777665542211 0134455555543 22332 244556677789999988655 2210 011
Q ss_pred HHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHh---hcCCCEEEEe-cCCHHHHHHHHH
Q 039466 160 EADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRS---ITNLPILIKG-VLTREDAIKAVE 235 (263)
Q Consensus 160 ~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~---~~~lPiilKG-I~s~eDA~~a~~ 235 (263)
. + . .-+..+++-+.++++ .+++|||.-| |.++.|+.+|+.
T Consensus 308 ~--~-~---------------------------------~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla 351 (486)
T PRK05567 308 I--V-A---------------------------------GVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALA 351 (486)
T ss_pred e--e-c---------------------------------CCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHH
Confidence 0 0 0 001124455555544 4689999988 999999999999
Q ss_pred cCCCEEEEcC
Q 039466 236 VGVAGIIVSN 245 (263)
Q Consensus 236 ~G~dgI~VSN 245 (263)
+||++++|.+
T Consensus 352 ~GA~~v~~G~ 361 (486)
T PRK05567 352 AGASAVMLGS 361 (486)
T ss_pred hCCCEEEECc
Confidence 9999999865
No 194
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=94.21 E-value=1.1 Score=41.62 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=30.5
Q ss_pred HHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEEcCC
Q 039466 208 IEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 208 l~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~VSNH 246 (263)
++++++ .+++++.. |-|++.|+++.+.|||+||+-++
T Consensus 96 ~~~lk~-~Gi~v~~~-v~s~~~A~~a~~~GaD~vVaqG~ 132 (320)
T cd04743 96 ARALEA-IGISTYLH-VPSPGLLKQFLENGARKFIFEGR 132 (320)
T ss_pred HHHHHH-CCCEEEEE-eCCHHHHHHHHHcCCCEEEEecC
Confidence 666665 47777755 89999999999999999999654
No 195
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=94.17 E-value=0.94 Score=41.06 Aligned_cols=45 Identities=24% Similarity=0.542 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHhhcCCCEEEEec--CCHHHHHHHHHcCCCEEEEc
Q 039466 200 DPSLSWKDIEWLRSITNLPILIKGV--LTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 200 ~~~~~W~dl~~lr~~~~lPiilKGI--~s~eDA~~a~~~G~dgI~VS 244 (263)
.+.++|+-|++|++.+++|+++=|- ...|+-++|++.|+.=|=++
T Consensus 180 ~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 226 (276)
T cd00947 180 EPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKLGVCKININ 226 (276)
T ss_pred CCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 5779999999999999999999996 67888999999999877543
No 196
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=94.12 E-value=0.39 Score=42.94 Aligned_cols=137 Identities=10% Similarity=0.041 Sum_probs=77.6
Q ss_pred HHHHHHHHCCCceeecCCCCccHHHHHHh---ccc-------cccCHHHHHHHHHHH-HHcCCCEEEEccCCC-------
Q 039466 93 ATARAAASCNTIMVLSFTSSCSIEEVAAS---CNA-------AYKKRDMAATLVQRA-ERNGFMALVLTADTP------- 154 (263)
Q Consensus 93 a~AraA~~~gi~~~lss~s~~sieeV~~~---~~~-------~~~d~~~~~~li~ra-~~aG~~al~vTvD~~------- 154 (263)
.+.+.+++.++++.++-.= .+ |+|.+. +.. .+.|+....++++++ ++-|...|++.+|.-
T Consensus 67 ~i~~i~~~~~~~v~vGGGI-r~-e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~ 144 (253)
T TIGR02129 67 AAKEALHAYPGGLQVGGGI-ND-TNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGRW 144 (253)
T ss_pred HHHHHHHhCCCCEEEeCCc-CH-HHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCcE
Confidence 4666777888888887543 34 666543 222 334422222334443 356778999999974
Q ss_pred ---CCcchHHHHhhhh-hhhhhhhhhh----ccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cC
Q 039466 155 ---RLDRREADIKNKM-IAQQLKNLEG----LLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VL 225 (263)
Q Consensus 155 ---~~g~R~~d~r~~~-~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~ 225 (263)
..||++..-.+-. .+. +.+.. +-..++...+ ....++.+-++.+++.+++|||.-| |-
T Consensus 145 ~V~~~GW~~~t~~~~~~e~~--~~~~~~~~~il~TdI~rDG-----------tl~G~dlel~~~l~~~~~ipVIASGGv~ 211 (253)
T TIGR02129 145 IVAMNKWQTITDLELNAETL--EELSKYCDEFLIHAADVEG-----------LCKGIDEELVSKLGEWSPIPITYAGGAK 211 (253)
T ss_pred EEEECCCcccCCCChHHHHH--HHHHhhCCEEEEeeecccC-----------ccccCCHHHHHHHHhhCCCCEEEECCCC
Confidence 1256552111111 110 11110 0000111000 0133578889999999999999999 99
Q ss_pred CHHHHHHHHHc--CCCEEEEc
Q 039466 226 TREDAIKAVEV--GVAGIIVS 244 (263)
Q Consensus 226 s~eDA~~a~~~--G~dgI~VS 244 (263)
|.+|.+++.+. |+.++++.
T Consensus 212 s~eDi~~l~~~~~g~~~aIvG 232 (253)
T TIGR02129 212 SIDDLDLVDELSKGKVDLTIG 232 (253)
T ss_pred CHHHHHHHHHhcCCCCcEEee
Confidence 99999999665 55556553
No 197
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=94.09 E-value=1.6 Score=39.46 Aligned_cols=166 Identities=11% Similarity=0.122 Sum_probs=92.9
Q ss_pred cCCcccccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCCCCccHHHHHHhccccccCHH---HHHHHHHHHHHc
Q 039466 66 TLDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNAAYKKRD---MAATLVQRAERN 142 (263)
Q Consensus 66 ~lG~~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~~~~d~~---~~~~li~ra~~a 142 (263)
+|+-.|.-|==-+|-++++++-.+|=.-++++.++.|+|.+.--....-++.+++... +++=+. ...+|++.+.+.
T Consensus 51 ~fK~sf~KapRTSp~sFqG~G~eeGL~iL~~vk~~~GlpvvTeV~~~~~~~~~ae~vD-ilQIgAr~~rntdLL~a~~~t 129 (281)
T PRK12457 51 VFKASFDKANRSSIHSYRGVGLDEGLRIFEEVKARFGVPVITDVHEVEQAAPVAEVAD-VLQVPAFLARQTDLVVAIAKT 129 (281)
T ss_pred EeeeccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCceEEEeCCHHHHHHHhhhCe-EEeeCchhhchHHHHHHHhcc
Confidence 4443343332335677777754567778999999999999876666666666666643 221111 245778777666
Q ss_pred CCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCC-CCCccHHHHHHHhcCCCCCHHHHHHHHhh-cCCCEE
Q 039466 143 GFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTS-DTGSNLEAYAKETMDPSLSWKDIEWLRSI-TNLPIL 220 (263)
Q Consensus 143 G~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~W~dl~~lr~~-~~lPii 220 (263)
| -.|.+.-.++-. ..++.+..+ -+. ..+|-.- ...-+. .+ ....-.++...|..+++. +.+|||
T Consensus 130 ~---kpV~lKrGqf~s-~~e~~~aae-----~i~--~~Gn~~vilcERG~-~f--gy~~~~~D~~~ip~mk~~~t~lPVi 195 (281)
T PRK12457 130 G---KPVNIKKPQFMS-PTQMKHVVS-----KCR--EAGNDRVILCERGS-SF--GYDNLVVDMLGFRQMKRTTGDLPVI 195 (281)
T ss_pred C---CeEEecCCCcCC-HHHHHHHHH-----HHH--HcCCCeEEEEeCCC-CC--CCCCcccchHHHHHHHhhCCCCCEE
Confidence 5 345555443211 122322111 000 0000000 000000 01 111122344568999996 799999
Q ss_pred EEecCC------------------HHHHHHHHHcCCCEEEEcCC
Q 039466 221 IKGVLT------------------REDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 221 lKGI~s------------------~eDA~~a~~~G~dgI~VSNH 246 (263)
+=--.+ +.=|+.|+.+|+||+++=-|
T Consensus 196 ~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iEvH 239 (281)
T PRK12457 196 FDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLEAH 239 (281)
T ss_pred EeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEec
Confidence 976544 56688889999999999888
No 198
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.08 E-value=0.53 Score=40.99 Aligned_cols=70 Identities=23% Similarity=0.231 Sum_probs=52.7
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCH-
Q 039466 127 KKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSW- 205 (263)
Q Consensus 127 ~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W- 205 (263)
.+.+....+++...+.|++.+=||.++|. |
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~~~~~-------------------------------------------------a~ 52 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTYTNPF-------------------------------------------------AS 52 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCcc-------------------------------------------------HH
Confidence 35567778888888899999988888652 2
Q ss_pred HHHHHHHhhcCC-C--EEEEe-cCCHHHHHHHHHcCCCEEEEcCC
Q 039466 206 KDIEWLRSITNL-P--ILIKG-VLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 206 ~dl~~lr~~~~l-P--iilKG-I~s~eDA~~a~~~G~dgI~VSNH 246 (263)
+-|+.|++..+- | +|-=| |+++++++.|+++|++-|| |-+
T Consensus 53 ~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv-sP~ 96 (213)
T PRK06552 53 EVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV-SPS 96 (213)
T ss_pred HHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE-CCC
Confidence 357778877643 3 45556 8999999999999999765 543
No 199
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.03 E-value=0.5 Score=40.85 Aligned_cols=71 Identities=23% Similarity=0.234 Sum_probs=53.7
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHH
Q 039466 127 KKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWK 206 (263)
Q Consensus 127 ~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 206 (263)
.|.+....+++.+.+.|++.+=||.++|.. -+
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~tp~a------------------------------------------------~~ 44 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLRTPAA------------------------------------------------LD 44 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCccH------------------------------------------------HH
Confidence 356677788888889999999999987530 13
Q ss_pred HHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcCC
Q 039466 207 DIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 207 dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSNH 246 (263)
-|+.+++..+-=+|-=| |+++|++++|+++|++-| ||-|
T Consensus 45 ~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fi-vSP~ 84 (201)
T PRK06015 45 AIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFI-VSPG 84 (201)
T ss_pred HHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEE-ECCC
Confidence 46667776654456666 899999999999999955 5554
No 200
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=94.01 E-value=0.28 Score=45.41 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=36.5
Q ss_pred CCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcC-CCEEEE
Q 039466 203 LSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVG-VAGIIV 243 (263)
Q Consensus 203 ~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G-~dgI~V 243 (263)
..++.++.||+.+++||+.-| |.+++|++.+++.| ||.|.+
T Consensus 277 ~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 277 YQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred ccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 345778999999999999999 89999999999988 998865
No 201
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=94.00 E-value=0.5 Score=43.83 Aligned_cols=40 Identities=30% Similarity=0.434 Sum_probs=35.7
Q ss_pred CHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcC-CCEEEE
Q 039466 204 SWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVG-VAGIIV 243 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G-~dgI~V 243 (263)
.|+..++||+.+++||++-| |.++++|+++++.| ||.|.+
T Consensus 280 ~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 280 FLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGL 321 (338)
T ss_pred hHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeee
Confidence 46778899999999999999 88999999999976 898876
No 202
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=94.00 E-value=0.1 Score=53.04 Aligned_cols=84 Identities=20% Similarity=0.289 Sum_probs=62.0
Q ss_pred HHHHHHhccc--cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHH
Q 039466 115 IEEVAASCNA--AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLE 192 (263)
Q Consensus 115 ieeV~~~~~~--~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 192 (263)
|.||+.+.|. +..+.-...++.+.-+++|+.+|=|-.|...
T Consensus 53 IaEiKraSPs~G~i~~~~d~~~~a~~y~~~GA~aiSVlTe~~~------------------------------------- 95 (695)
T PRK13802 53 IAEIKRASPSKGHLSDIPDPAALAREYEQGGASAISVLTEGRR------------------------------------- 95 (695)
T ss_pred EEEeecCCCCCCcCCCCCCHHHHHHHHHHcCCcEEEEecCcCc-------------------------------------
Confidence 4466666663 3332223345555667888888888777432
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEE
Q 039466 193 AYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIV 243 (263)
Q Consensus 193 ~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~V 243 (263)
+.+ ++++|+.+|+.+++||+-|- |.++-....|..+|+|+|.+
T Consensus 96 ------F~G--s~~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GADavLL 139 (695)
T PRK13802 96 ------FLG--SLDDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHGADLVLL 139 (695)
T ss_pred ------CCC--CHHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCEeeh
Confidence 112 57999999999999999999 89999999999999999975
No 203
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=93.84 E-value=0.015 Score=49.08 Aligned_cols=41 Identities=37% Similarity=0.512 Sum_probs=33.3
Q ss_pred HHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 205 WKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 205 W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
-.-++++++.++.|||.=| |.+.||+..|+++|+.||-.||
T Consensus 129 p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~ 170 (175)
T PF04309_consen 129 PKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAVSTSN 170 (175)
T ss_dssp HHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEEEE--
T ss_pred HHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEEEcCC
Confidence 3568889999999999999 8999999999999999999886
No 204
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=93.74 E-value=0.28 Score=45.49 Aligned_cols=39 Identities=26% Similarity=0.395 Sum_probs=34.4
Q ss_pred HHHHHHHh-hcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 206 KDIEWLRS-ITNLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 206 ~dl~~lr~-~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
+.|..+++ ..++|||.-| |.+++|+.+++..|||+|.++
T Consensus 243 ~~l~~~~~~~~~ipVIasGGI~~~~di~kaLalGAd~V~ig 283 (333)
T TIGR02151 243 ASLLEVRSDAPDAPIIASGGLRTGLDVAKAIALGADAVGMA 283 (333)
T ss_pred HHHHHHHhcCCCCeEEEECCCCCHHHHHHHHHhCCCeehhh
Confidence 45777777 5789999999 999999999999999999875
No 205
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=93.73 E-value=0.69 Score=44.35 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=27.2
Q ss_pred CCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 216 NLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 216 ~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
++|||.=| |.+++++..|..+|+++|++.
T Consensus 219 ~ipViAAGGI~tg~~vaAA~alGAd~V~~G 248 (418)
T cd04742 219 PIRVGAAGGIGTPEAAAAAFALGADFIVTG 248 (418)
T ss_pred CceEEEECCCCCHHHHHHHHHcCCcEEeec
Confidence 69999997 999999999999999999984
No 206
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=93.62 E-value=0.15 Score=45.17 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=36.3
Q ss_pred HHHHHHHHhhc-CCCEEEEe-cCCHHHHHHHHHcCCCEEEEcCC
Q 039466 205 WKDIEWLRSIT-NLPILIKG-VLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 205 W~dl~~lr~~~-~lPiilKG-I~s~eDA~~a~~~G~dgI~VSNH 246 (263)
.+.++++|+.+ +.||++=| |.++++++.++++|+||++|...
T Consensus 173 ~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSa 216 (244)
T PRK13125 173 ERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVGTA 216 (244)
T ss_pred HHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHH
Confidence 35789999988 48988776 99999999999999999999753
No 207
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=93.54 E-value=0.18 Score=44.32 Aligned_cols=43 Identities=23% Similarity=0.326 Sum_probs=38.5
Q ss_pred CCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 203 LSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 203 ~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
.+.+-++.+++..++||++=| |-|.||++++.+.|+++++|..
T Consensus 60 ~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGt 103 (228)
T PRK04128 60 KNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGT 103 (228)
T ss_pred chHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECc
Confidence 456778999999999999987 9999999999999999999853
No 208
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.36 E-value=0.9 Score=39.57 Aligned_cols=70 Identities=24% Similarity=0.284 Sum_probs=52.2
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCH-
Q 039466 127 KKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSW- 205 (263)
Q Consensus 127 ~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W- 205 (263)
.+.+...++++.+.+.|++.+=||.+++. |
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~~-------------------------------------------------~~ 54 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTPA-------------------------------------------------AL 54 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCcc-------------------------------------------------HH
Confidence 35566777778888888888888866542 2
Q ss_pred HHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 206 KDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 206 ~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
+-|+.+++..+--+|.=| |++.++++.|+++|++-|+..+
T Consensus 55 ~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~ 95 (212)
T PRK05718 55 EAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPG 95 (212)
T ss_pred HHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCC
Confidence 347778877665567777 8999999999999999776543
No 209
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=93.35 E-value=0.25 Score=41.14 Aligned_cols=44 Identities=23% Similarity=0.467 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEEc
Q 039466 201 PSLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 201 ~~~~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~VS 244 (263)
...+|+.++++++..+.||++=|=.+.+++..+.++|++||+++
T Consensus 135 ~~~~~~~~~~~~~~~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g 178 (196)
T cd00564 135 PPLGLELLREIAELVEIPVVAIGGITPENAAEVLAAGADGVAVI 178 (196)
T ss_pred CCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEe
Confidence 34679999999998999999988447899999999999999986
No 210
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=93.35 E-value=0.67 Score=42.82 Aligned_cols=91 Identities=19% Similarity=0.246 Sum_probs=59.3
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHH
Q 039466 127 KKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWK 206 (263)
Q Consensus 127 ~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 206 (263)
.|++...+..+.+++.||+.|-+..-+|+.-.+ +.++ +..+. .++.+.-+
T Consensus 64 ~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~----~~g~------------------------Gs~Ll--~~p~~~~~ 113 (318)
T TIGR00742 64 SDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQ----NGNF------------------------GACLM--GNADLVAD 113 (318)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhC----CCCe------------------------ehHhh--cCHHHHHH
Confidence 588888888888988999999999988762000 0000 00110 12233335
Q ss_pred HHHHHHhhcCCCEEEE---ecCC---HHH----HHHHHHcCCCEEEEcCCCCC
Q 039466 207 DIEWLRSITNLPILIK---GVLT---RED----AIKAVEVGVAGIIVSNHGAR 249 (263)
Q Consensus 207 dl~~lr~~~~lPiilK---GI~s---~eD----A~~a~~~G~dgI~VSNHGGR 249 (263)
-++.+++.++.||.+| |+-. .++ ++.+.+.|++.|.| ||++
T Consensus 114 iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itv--HgRt 164 (318)
T TIGR00742 114 CVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIV--HARK 164 (318)
T ss_pred HHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEE--eCCc
Confidence 5788899999999999 5432 233 56667899999877 5554
No 211
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=93.26 E-value=0.96 Score=44.82 Aligned_cols=42 Identities=7% Similarity=0.182 Sum_probs=36.3
Q ss_pred CCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHH-cCCCEEEEc
Q 039466 203 LSWKDIEWLRSITNLPILIKG-VLTREDAIKAVE-VGVAGIIVS 244 (263)
Q Consensus 203 ~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~-~G~dgI~VS 244 (263)
++-+-++.+++.+++|||.-| +-+++|...+++ .|+++...+
T Consensus 469 ~d~~l~~~v~~~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa 512 (538)
T PLN02617 469 FDIELVKLVSDAVTIPVIASSGAGTPEHFSDVFSKTNASAALAA 512 (538)
T ss_pred cCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHhcCCccEEEEE
Confidence 466778889999999999999 999999999998 678887654
No 212
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=93.24 E-value=0.95 Score=40.73 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHc--CCCEEEE
Q 039466 202 SLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEV--GVAGIIV 243 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~--G~dgI~V 243 (263)
..+.+-++.+++.+++|||.-| |-|.+|.+++.+. |+.|++|
T Consensus 193 G~d~el~~~l~~~~~ipVIASGGv~sleDi~~L~~~g~g~~gvIv 237 (262)
T PLN02446 193 GIDEELVALLGEHSPIPVTYAGGVRSLDDLERVKVAGGGRVDVTV 237 (262)
T ss_pred CCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCCEEEEE
Confidence 3567888999999999999999 9999999999997 5888888
No 213
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=93.19 E-value=0.82 Score=40.38 Aligned_cols=138 Identities=17% Similarity=0.169 Sum_probs=80.6
Q ss_pred HHHHHHHHCCCceeecCCCCccHHHHHHhc---cc-------cccCHHHHHHHHHHH-HHcCCCEEEEccCCCCCcchHH
Q 039466 93 ATARAAASCNTIMVLSFTSSCSIEEVAASC---NA-------AYKKRDMAATLVQRA-ERNGFMALVLTADTPRLDRREA 161 (263)
Q Consensus 93 a~AraA~~~gi~~~lss~s~~sieeV~~~~---~~-------~~~d~~~~~~li~ra-~~aG~~al~vTvD~~~~g~R~~ 161 (263)
-+.|.|++.-||++++- ...++|++.+.- .+ -.+|++ +|+++ ++-|.+.+||.+|+..- .
T Consensus 65 vv~r~A~~vfiPltVGG-GI~s~eD~~~ll~aGADKVSINsaAv~~p~----lI~~~a~~FGsQciVvaIDakr~----~ 135 (256)
T COG0107 65 VVERVAEQVFIPLTVGG-GIRSVEDARKLLRAGADKVSINSAAVKDPE----LITEAADRFGSQCIVVAIDAKRV----P 135 (256)
T ss_pred HHHHHHhhceeeeEecC-CcCCHHHHHHHHHcCCCeeeeChhHhcChH----HHHHHHHHhCCceEEEEEEeeec----c
Confidence 47788999999999984 568899987542 22 345665 45554 57899999999997541 0
Q ss_pred HH-hhhhhhh---hhhh--hhhccccCCCCCCCccHHHHH--HHhcC---CCCCHHHHHHHHhhcCCCEEEEe-cCCHHH
Q 039466 162 DI-KNKMIAQ---QLKN--LEGLLSTKVTSDTGSNLEAYA--KETMD---PSLSWKDIEWLRSITNLPILIKG-VLTRED 229 (263)
Q Consensus 162 d~-r~~~~~p---~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~W~dl~~lr~~~~lPiilKG-I~s~eD 229 (263)
+- ..+|..- +.+. +..+... ......+.+|.+ +...| ..++-+-++.+++..++|||..| .-++++
T Consensus 136 ~g~~~~~~v~~~gGr~~t~~d~~~Wa--~~~e~~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v~iPvIASGGaG~~eh 213 (256)
T COG0107 136 DGENGWYEVFTHGGREDTGLDAVEWA--KEVEELGAGEILLTSMDRDGTKAGYDLELTRAVREAVNIPVIASGGAGKPEH 213 (256)
T ss_pred CCCCCcEEEEecCCCcCCCcCHHHHH--HHHHHcCCceEEEeeecccccccCcCHHHHHHHHHhCCCCEEecCCCCcHHH
Confidence 00 0011100 0000 0000000 000000011111 00112 23566789999999999999999 899999
Q ss_pred HHHHHHcC-CCEE
Q 039466 230 AIKAVEVG-VAGI 241 (263)
Q Consensus 230 A~~a~~~G-~dgI 241 (263)
-..+...| +||.
T Consensus 214 f~eaf~~~~adAa 226 (256)
T COG0107 214 FVEAFTEGKADAA 226 (256)
T ss_pred HHHHHHhcCccHH
Confidence 99999766 7765
No 214
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=93.18 E-value=0.67 Score=41.63 Aligned_cols=45 Identities=24% Similarity=0.460 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHhhcCCCEEEEec-------CCHHHHHHHHHcCCCEEEEcCC
Q 039466 202 SLSWKDIEWLRSITNLPILIKGV-------LTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~lPiilKGI-------~s~eDA~~a~~~G~dgI~VSNH 246 (263)
.++-..+.++|+.|.||||+-=- +-.--|+.|+.+|+|||++=-|
T Consensus 200 tLDi~aV~~~kq~THLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiEVH 251 (286)
T COG2876 200 TLDISAVPILKQETHLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIEVH 251 (286)
T ss_pred eechHHHHHHHhhcCCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEEec
Confidence 35667899999999999998632 3345688888999999998666
No 215
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=93.16 E-value=0.9 Score=38.49 Aligned_cols=69 Identities=28% Similarity=0.295 Sum_probs=51.9
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHH
Q 039466 127 KKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWK 206 (263)
Q Consensus 127 ~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 206 (263)
.+.+....+++.+.++|++.+.++.+.+. ..+
T Consensus 13 ~~~~~~~~~~~~l~~~G~~~vev~~~~~~------------------------------------------------~~~ 44 (190)
T cd00452 13 DDAEDALALAEALIEGGIRAIEITLRTPG------------------------------------------------ALE 44 (190)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCChh------------------------------------------------HHH
Confidence 35566778888888999999999877431 113
Q ss_pred HHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEE
Q 039466 207 DIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIV 243 (263)
Q Consensus 207 dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~V 243 (263)
.++.+++..+-..|.=| |++.+++..|+++|+++|+.
T Consensus 45 ~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~ 82 (190)
T cd00452 45 AIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVS 82 (190)
T ss_pred HHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEc
Confidence 67788888763344444 88999999999999999964
No 216
>PLN02826 dihydroorotate dehydrogenase
Probab=93.14 E-value=0.36 Score=46.20 Aligned_cols=41 Identities=24% Similarity=0.325 Sum_probs=35.5
Q ss_pred CHHHHHHHHhhc--CCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 204 SWKDIEWLRSIT--NLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 204 ~W~dl~~lr~~~--~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
+.+-+..+++.+ ++|||.=| |.+.+||.+.+.+||+.|.|.
T Consensus 327 sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~ 370 (409)
T PLN02826 327 STEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLY 370 (409)
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeec
Confidence 345677788877 68999988 999999999999999999875
No 217
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=93.10 E-value=0.81 Score=39.80 Aligned_cols=69 Identities=28% Similarity=0.275 Sum_probs=55.2
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHH
Q 039466 127 KKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWK 206 (263)
Q Consensus 127 ~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 206 (263)
.+.+....+++..-+.|++++=||..+|.. -+
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl~sp~a------------------------------------------------~e 53 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITLRTPAA------------------------------------------------LE 53 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCCCH------------------------------------------------HH
Confidence 567788888888889999999999987641 13
Q ss_pred HHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 207 DIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 207 dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
-|+.+++..+-=+|-=| |+++++++.|.++|++-| ||
T Consensus 54 ~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fi-Vs 91 (211)
T COG0800 54 AIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFI-VS 91 (211)
T ss_pred HHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEE-EC
Confidence 47778887776677778 899999999999999955 54
No 218
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=93.03 E-value=0.49 Score=40.71 Aligned_cols=68 Identities=28% Similarity=0.306 Sum_probs=47.2
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHH
Q 039466 127 KKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWK 206 (263)
Q Consensus 127 ~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 206 (263)
.|.+....+++...+.|++.+=||.++|. ..+
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~t~~------------------------------------------------a~~ 48 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLRTPN------------------------------------------------ALE 48 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETTSTT------------------------------------------------HHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCcc------------------------------------------------HHH
Confidence 35566777778788889999888888642 113
Q ss_pred HHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEE
Q 039466 207 DIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGII 242 (263)
Q Consensus 207 dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~ 242 (263)
-|+.+++..+-=+|-=| |+++|++++|+++|++-|+
T Consensus 49 ~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~Fiv 85 (196)
T PF01081_consen 49 AIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIV 85 (196)
T ss_dssp HHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEE
T ss_pred HHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEE
Confidence 46777877765566667 8999999999999999664
No 219
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=92.93 E-value=2.2 Score=39.56 Aligned_cols=146 Identities=16% Similarity=0.196 Sum_probs=80.0
Q ss_pred HHHHHC--CCceeecCCCCccHHHHHHhcc-c------------cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchH
Q 039466 96 RAAASC--NTIMVLSFTSSCSIEEVAASCN-A------------AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRRE 160 (263)
Q Consensus 96 raA~~~--gi~~~lss~s~~sieeV~~~~~-~------------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~ 160 (263)
..|.++ .+|.+|---=..++|.|.++-. | +-.|-+.++++++.|.+.|+.. -.-.-..|--+
T Consensus 77 ~~a~~a~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsV---EaElG~igg~e 153 (321)
T PRK07084 77 EYAKELGCPIPIVLHLDHGDSFELCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTV---EGELGVLAGVE 153 (321)
T ss_pred HHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeE---EEEEeeecCcc
Confidence 345555 5787776555567777765532 2 2245567889999998877432 11111111111
Q ss_pred HHH---hhhhhhh-hhhhhhhc-cccCCCCCCCccHHHHHHHh--cCCCCCHHHHHHHHhhc-CCCEEEEecC-------
Q 039466 161 ADI---KNKMIAQ-QLKNLEGL-LSTKVTSDTGSNLEAYAKET--MDPSLSWKDIEWLRSIT-NLPILIKGVL------- 225 (263)
Q Consensus 161 ~d~---r~~~~~p-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~W~dl~~lr~~~-~lPiilKGI~------- 225 (263)
.+. ...|+-| ..+.|... ...-+....++.++.|.... ..+.++|+-|+.|++.+ ++|+|+=|-.
T Consensus 154 d~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~ 233 (321)
T PRK07084 154 DEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYV 233 (321)
T ss_pred CCccCcccccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHH
Confidence 110 0113333 11111100 00001111222333333210 14679999999999999 6999999976
Q ss_pred ----------------CHHHHHHHHHcCCCEEEEc
Q 039466 226 ----------------TREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 226 ----------------s~eDA~~a~~~G~dgI~VS 244 (263)
+.||-++|+++|+.=|=|+
T Consensus 234 ~~~~~~g~~~~~~~Gi~~e~~~kai~~GI~KINi~ 268 (321)
T PRK07084 234 KTINEYGGKLKDAIGIPEEQLRKAAKSAVCKINID 268 (321)
T ss_pred HHHHHhcCccccCCCCCHHHHHHHHHcCCceeccc
Confidence 4699999999999877554
No 220
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=92.83 E-value=0.18 Score=42.29 Aligned_cols=46 Identities=28% Similarity=0.429 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcCC
Q 039466 201 PSLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 201 ~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSNH 246 (263)
|..--+-++|+.+.++.|||.=| |.+.||+..|+++|+.++--||-
T Consensus 129 PGv~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA~avSTs~~ 175 (181)
T COG1954 129 PGVMPKVIKEITEKTHIPIIAGGLIETEEEVREALKAGAVAVSTSNT 175 (181)
T ss_pred CcccHHHHHHHHHhcCCCEEeccccccHHHHHHHHHhCcEEEeecch
Confidence 34556789999999999999999 89999999999999999877764
No 221
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=92.76 E-value=0.28 Score=40.30 Aligned_cols=39 Identities=26% Similarity=0.476 Sum_probs=34.2
Q ss_pred HHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 207 DIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 207 dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
.++.+++..+.||++=| |.+++++.++++.|+|+|+|+.
T Consensus 161 ~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 161 LLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred HHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 46667778899999999 8899999999999999999863
No 222
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=92.71 E-value=0.45 Score=45.13 Aligned_cols=40 Identities=20% Similarity=0.381 Sum_probs=34.1
Q ss_pred HHHHHHHHhhc--CCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 205 WKDIEWLRSIT--NLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 205 W~dl~~lr~~~--~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
-+-|.++++.. ++|||+-| |.+..|+.+|+.+||+++.++
T Consensus 295 ~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iG 337 (383)
T cd03332 295 LDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIG 337 (383)
T ss_pred HHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEc
Confidence 34566777655 49999999 999999999999999999884
No 223
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=92.66 E-value=0.8 Score=40.05 Aligned_cols=42 Identities=12% Similarity=0.287 Sum_probs=34.6
Q ss_pred CHHHHHHHHhhcC-----CCEEEEecCCHHHHHHHHHcCCCEEEEcC
Q 039466 204 SWKDIEWLRSITN-----LPILIKGVLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 204 ~W~dl~~lr~~~~-----lPiilKGI~s~eDA~~a~~~G~dgI~VSN 245 (263)
+.+.|+++|+..+ .||.+=|=.+.+++..++++|||++++++
T Consensus 150 ~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvGS 196 (220)
T PRK08883 150 TLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAGS 196 (220)
T ss_pred HHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEeH
Confidence 5577888887763 88988775569999999999999999864
No 224
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=92.56 E-value=0.2 Score=44.11 Aligned_cols=41 Identities=22% Similarity=0.338 Sum_probs=34.3
Q ss_pred CHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcCC
Q 039466 204 SWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSNH 246 (263)
.-+.++.+.+.+ |+|+=| |.|+|.|++.+++|+|.||+.|-
T Consensus 181 ~~e~v~~v~~~~--~LivGGGIrs~E~A~~~a~agAD~IVtG~i 222 (240)
T COG1646 181 PVEMVSRVLSDT--PLIVGGGIRSPEQAREMAEAGADTIVTGTI 222 (240)
T ss_pred CHHHHHHhhccc--eEEEcCCcCCHHHHHHHHHcCCCEEEECce
Confidence 445666666666 888877 99999999999999999999874
No 225
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=92.52 E-value=0.19 Score=44.42 Aligned_cols=41 Identities=29% Similarity=0.389 Sum_probs=37.0
Q ss_pred HHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcCC
Q 039466 205 WKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 205 W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSNH 246 (263)
-+.++.+|+.++.||++=| |.++|+++++.++ +||++|.++
T Consensus 176 ~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSa 217 (242)
T cd04724 176 KELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSA 217 (242)
T ss_pred HHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc-CCEEEECHH
Confidence 3679999999999999977 9999999999999 999999764
No 226
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=92.48 E-value=0.84 Score=44.53 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=30.4
Q ss_pred hhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 213 SITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 213 ~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
+.+++|||.-| |.++.|+.+|+.+|+++++|++
T Consensus 325 ~~~~~~viadGgi~~~~di~kala~GA~~vm~g~ 358 (475)
T TIGR01303 325 RKLGGHVWADGGVRHPRDVALALAAGASNVMVGS 358 (475)
T ss_pred HHcCCcEEEeCCCCCHHHHHHHHHcCCCEEeech
Confidence 44589999999 9999999999999999999976
No 227
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=92.45 E-value=0.49 Score=44.07 Aligned_cols=55 Identities=20% Similarity=0.354 Sum_probs=39.3
Q ss_pred HHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEEcC-----CCCCCCCCchhhhcccc
Q 039466 205 WKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSN-----HGARQLDYTPATISALE 262 (263)
Q Consensus 205 W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~VSN-----HGGRqlD~~~~~i~~Lp 262 (263)
-++++.+++ .+..++.+ |-++..|+++.+.|+|+||+=. |-|. .+..++++..+|
T Consensus 117 ~~~i~~~~~-~g~~v~~~-v~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~-~~~~~~t~~Lv~ 176 (336)
T COG2070 117 AEFVARLKA-AGIKVIHS-VITVREALKAERAGADAVIAQGAEAGGHRGG-VDLEVSTFALVP 176 (336)
T ss_pred HHHHHHHHH-cCCeEEEE-eCCHHHHHHHHhCCCCEEEecCCcCCCcCCC-CCCCccHHHHHH
Confidence 367788877 56666655 9999999999999999999854 4333 344666655544
No 228
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=92.40 E-value=4.4 Score=36.82 Aligned_cols=153 Identities=17% Similarity=0.209 Sum_probs=86.0
Q ss_pred cccCCcccCCChhHHHHHHHHHHCCCceeecCCCCccHHHHHHhccccccCH---HHHHHHHHHHHHcCCCEEEEccCCC
Q 039466 78 APTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNAAYKKR---DMAATLVQRAERNGFMALVLTADTP 154 (263)
Q Consensus 78 aP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~~~~d~---~~~~~li~ra~~aG~~al~vTvD~~ 154 (263)
+|-++++++-.+|=.-++++.++.|+|.+.--....-++.+++.. +++.=+ -...+|++.+.+.| -.|.+.-.
T Consensus 63 Sp~sFrG~G~eeGL~iL~~vk~~~glpvvTeV~~~~q~~~vae~~-DilQIgAr~~rqtdLL~a~~~tg---kpV~lKkG 138 (290)
T PLN03033 63 SSKSFRGPGMAEGLKILEKVKVAYDLPIVTDVHESSQCEAVGKVA-DIIQIPAFLCRQTDLLVAAAKTG---KIINIKKG 138 (290)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCceEEeeCCHHHHHHHHhhC-cEEeeCcHHHHHHHHHHHHHccC---CeEEeCCC
Confidence 466677765456777899999999999987766666677777665 322211 13467777766665 34555544
Q ss_pred CCcchHHHHhhhhhhhhhhhhhhccccCCCC-CCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEecCC-------
Q 039466 155 RLDRREADIKNKMIAQQLKNLEGLLSTKVTS-DTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLT------- 226 (263)
Q Consensus 155 ~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKGI~s------- 226 (263)
+. --..|+.+..+ -+. ..+|-+- ...-+. .+ ....-.++...+.++++ +++|||+---.+
T Consensus 139 q~-~t~~e~~~aae-----ki~--~~GN~~viLcERG~--tF-gy~~lv~D~r~ip~mk~-~~lPVI~DpSHsvQ~pg~~ 206 (290)
T PLN03033 139 QF-CAPSVMRNSAE-----KVR--LAGNPNVMVCERGT--MF-GYNDLIVDPRNLEWMRE-ANCPVVADITHSLQQPAGK 206 (290)
T ss_pred CC-CCHHHHHHHHH-----HHH--HcCCCcEEEEeCCC--Cc-CCCCcccchhhhHHHHh-cCCCEEEeCCccccCCCcc
Confidence 32 11112221110 000 0001000 000000 11 11111235566888884 899999864332
Q ss_pred ----------------HHHHHHHHHcCCCEEEEcCC
Q 039466 227 ----------------REDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 227 ----------------~eDA~~a~~~G~dgI~VSNH 246 (263)
+.=|+.|+.+|+||+++=-|
T Consensus 207 ~~~~~g~~s~G~Re~V~~larAAvA~GaDGlfiEvH 242 (290)
T PLN03033 207 KLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEVH 242 (290)
T ss_pred cccccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEec
Confidence 45688899999999999888
No 229
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=92.15 E-value=1.9 Score=37.92 Aligned_cols=40 Identities=25% Similarity=0.142 Sum_probs=29.3
Q ss_pred HHHHHHHhhcCCCEEEEec-----CCHHHHHHHHHcCCCEEEEcCC
Q 039466 206 KDIEWLRSITNLPILIKGV-----LTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 206 ~dl~~lr~~~~lPiilKGI-----~s~eDA~~a~~~G~dgI~VSNH 246 (263)
+-++.+|+ .+.||.+|== .+.+=|+.+.++|+|+|-+++.
T Consensus 130 eiv~avr~-~~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~ 174 (233)
T cd02911 130 EFIKALKE-TGVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAM 174 (233)
T ss_pred HHHHHHHh-cCCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcC
Confidence 34677776 5899999941 3456667777899999877653
No 230
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=92.13 E-value=1.9 Score=36.35 Aligned_cols=43 Identities=14% Similarity=0.246 Sum_probs=36.5
Q ss_pred CHHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEEcCC
Q 039466 204 SWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~VSNH 246 (263)
.-+.++.+++..+.||++=|=-+++++..+++.|+|+++|+..
T Consensus 146 ~~~~i~~~~~~~~~~i~~~GGI~~~~i~~~~~~Gad~vvvGsa 188 (202)
T cd04726 146 PEDDLKKVKKLLGVKVAVAGGITPDTLPEFKKAGADIVIVGRA 188 (202)
T ss_pred CHHHHHHHHhhcCCCEEEECCcCHHHHHHHHhcCCCEEEEeeh
Confidence 4467888887778999999855799999999999999998754
No 231
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=92.11 E-value=0.93 Score=42.45 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=35.4
Q ss_pred HHHHHHHhh-cCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 206 KDIEWLRSI-TNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 206 ~dl~~lr~~-~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
+.|..+++. .++|||.-| |.++.|+.+++..|||++.|+.
T Consensus 250 ~~l~~i~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~ 291 (352)
T PRK05437 250 QSLLEARSLLPDLPIIASGGIRNGLDIAKALALGADAVGMAG 291 (352)
T ss_pred HHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEhH
Confidence 467777777 589999999 9999999999999999999875
No 232
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=92.08 E-value=0.25 Score=43.32 Aligned_cols=43 Identities=21% Similarity=0.407 Sum_probs=37.3
Q ss_pred CHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcCC
Q 039466 204 SWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSNH 246 (263)
+++.|+.+.+.+.+||.+=| |-+.||++++++.|++-++|+..
T Consensus 61 n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~ 104 (229)
T PF00977_consen 61 NLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTE 104 (229)
T ss_dssp HHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHH
T ss_pred HHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeChH
Confidence 56789999999999999988 99999999999999999998753
No 233
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=92.06 E-value=0.25 Score=44.31 Aligned_cols=40 Identities=33% Similarity=0.517 Sum_probs=33.3
Q ss_pred HHHHHHHhhcCCCEEE-EecCCHHHHHHHHHcCCCEEEEcCC
Q 039466 206 KDIEWLRSITNLPILI-KGVLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 206 ~dl~~lr~~~~lPiil-KGI~s~eDA~~a~~~G~dgI~VSNH 246 (263)
+.++.+|+.+++||++ =||.++|+++.+. .|+||++|..+
T Consensus 188 ~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa 228 (259)
T PF00290_consen 188 EFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVGSA 228 (259)
T ss_dssp HHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEESHH
T ss_pred HHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEECHH
Confidence 4589999999999766 5799999999998 99999999764
No 234
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.96 E-value=2.9 Score=36.40 Aligned_cols=43 Identities=9% Similarity=0.161 Sum_probs=36.7
Q ss_pred CCHHHHHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCCEEEEcC
Q 039466 203 LSWKDIEWLRSITN-LPILIKGVLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 203 ~~W~dl~~lr~~~~-lPiilKGI~s~eDA~~a~~~G~dgI~VSN 245 (263)
+.-+.|+.++...+ +||+.=|=.+.+.+...+++|++++.|++
T Consensus 141 ~G~~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aGa~~vavgs 184 (213)
T PRK06552 141 LGPSFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAGADAVGIGG 184 (213)
T ss_pred CCHHHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCCCcEEEEch
Confidence 34466888888877 99999997789999999999999998874
No 235
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=91.93 E-value=0.43 Score=44.82 Aligned_cols=42 Identities=19% Similarity=0.404 Sum_probs=33.3
Q ss_pred CHHHHHHHHhhc--CCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 204 SWKDIEWLRSIT--NLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 204 ~W~dl~~lr~~~--~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
+.+-|.++++.. ++|||+-| |.+.-|+.+|+-+||+++-++.
T Consensus 266 ~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr 310 (356)
T PF01070_consen 266 TIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGR 310 (356)
T ss_dssp HHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESH
T ss_pred cccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEcc
Confidence 446788888855 59999999 9999999999999999998864
No 236
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=91.87 E-value=0.21 Score=41.96 Aligned_cols=44 Identities=23% Similarity=0.398 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEEc
Q 039466 201 PSLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 201 ~~~~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~VS 244 (263)
+.+.|+.++|+++..++|++.=|=.+++++..+.++|++||-|.
T Consensus 134 ~~~g~~~l~~~~~~~~~pv~AlGGI~~~~i~~l~~~Ga~gvAvi 177 (180)
T PF02581_consen 134 PPLGLDGLREIARASPIPVYALGGITPENIPELREAGADGVAVI 177 (180)
T ss_dssp TTCHHHHHHHHHHHTSSCEEEESS--TTTHHHHHHTT-SEEEES
T ss_pred cccCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHcCCCEEEEE
Confidence 56789999999999999999999679999999999999999875
No 237
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=91.85 E-value=0.93 Score=40.53 Aligned_cols=93 Identities=19% Similarity=0.227 Sum_probs=57.7
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCC--CccHHHHHHHhcCCCC
Q 039466 126 YKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDT--GSNLEAYAKETMDPSL 203 (263)
Q Consensus 126 ~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 203 (263)
+.|.+.+.++++...++|++.|=+.+=. +-| +.++. ..+..+.+..-..-.-
T Consensus 20 ~P~~~~~~~~~~~l~~~Gad~iElGiPf--------------sDP------------~aDGpvIq~a~~~al~~G~~~~~ 73 (256)
T TIGR00262 20 DPTLETSLEIIKTLIEAGADALELGVPF--------------SDP------------LADGPTIQAADLRALRAGMTPEK 73 (256)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCC--------------CCC------------CCcCHHHHHHHHHHHHcCCCHHH
Confidence 3467778898999899998887765421 111 00000 0001111111111112
Q ss_pred CHHHHHHHHhh-cCCCEEEEecCCH------HH-HHHHHHcCCCEEEEc
Q 039466 204 SWKDIEWLRSI-TNLPILIKGVLTR------ED-AIKAVEVGVAGIIVS 244 (263)
Q Consensus 204 ~W~dl~~lr~~-~~lPiilKGI~s~------eD-A~~a~~~G~dgI~VS 244 (263)
.++.++++|+. .++|+++=+..++ |+ .+.+.++|+|||++-
T Consensus 74 ~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviip 122 (256)
T TIGR00262 74 CFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVA 122 (256)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEEC
Confidence 46779999977 8999998888887 55 788889999999874
No 238
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=91.83 E-value=0.31 Score=43.69 Aligned_cols=142 Identities=19% Similarity=0.185 Sum_probs=69.3
Q ss_pred HHHHHHHHCCCceeecCC-----CCccHHHHHHhcc--c---cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchH-H
Q 039466 93 ATARAAASCNTIMVLSFT-----SSCSIEEVAASCN--A---AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRRE-A 161 (263)
Q Consensus 93 a~AraA~~~gi~~~lss~-----s~~sieeV~~~~~--~---~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~-~ 161 (263)
.+|+.-.+.|. -++|-. ...|++++..... . +.||-=...-.|.+|+.+|++++.+.+.. ++... .
T Consensus 72 ~~a~~y~~~GA-~aiSVlTe~~~F~Gs~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~--L~~~~l~ 148 (254)
T PF00218_consen 72 EIAKAYEEAGA-AAISVLTEPKFFGGSLEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIAAI--LSDDQLE 148 (254)
T ss_dssp HHHHHHHHTT--SEEEEE--SCCCHHHHHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-SEEEEEGGG--SGHHHHH
T ss_pred HHHHHHHhcCC-CEEEEECCCCCCCCCHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCCEeehhHHh--CCHHHHH
Confidence 67777777774 344432 3357777664432 1 34444344456788889999999998884 33333 2
Q ss_pred HHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHH-----------hcCCCCCHHHHHHHHhhcC---CCEEEEecCCH
Q 039466 162 DIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKE-----------TMDPSLSWKDIEWLRSITN---LPILIKGVLTR 227 (263)
Q Consensus 162 d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~W~dl~~lr~~~~---lPiilKGI~s~ 227 (263)
++...-..-++.-+...+.. . -....... ..+-..+.+.-..|....+ +.|---||.++
T Consensus 149 ~l~~~a~~lGle~lVEVh~~--~-----El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~~~~iseSGI~~~ 221 (254)
T PF00218_consen 149 ELLELAHSLGLEALVEVHNE--E-----ELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIPKDVIVISESGIKTP 221 (254)
T ss_dssp HHHHHHHHTT-EEEEEESSH--H-----HHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSHTTSEEEEESS-SSH
T ss_pred HHHHHHHHcCCCeEEEECCH--H-----HHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCccceeEEeecCCCCH
Confidence 22110000011111000000 0 00000000 0001123344455555433 44555679999
Q ss_pred HHHHHHHHcCCCEEEEc
Q 039466 228 EDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 228 eDA~~a~~~G~dgI~VS 244 (263)
+|++.+.++|+|||.|.
T Consensus 222 ~d~~~l~~~G~davLVG 238 (254)
T PF00218_consen 222 EDARRLARAGADAVLVG 238 (254)
T ss_dssp HHHHHHCTTT-SEEEES
T ss_pred HHHHHHHHCCCCEEEEC
Confidence 99999999999999985
No 239
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=91.71 E-value=1.2 Score=41.68 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=33.3
Q ss_pred CHHHHHHHHhh-----cCCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 204 SWKDIEWLRSI-----TNLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 204 ~W~dl~~lr~~-----~~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
+++-|..+++. -++|||+=| |.+..|+.+|+-+||+++.|+
T Consensus 254 ~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG 300 (344)
T cd02922 254 PIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLG 300 (344)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 34455555552 259999999 999999999999999999885
No 240
>PLN02535 glycolate oxidase
Probab=91.71 E-value=0.83 Score=43.06 Aligned_cols=40 Identities=25% Similarity=0.477 Sum_probs=33.7
Q ss_pred HHHHHHHhhc--CCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 206 KDIEWLRSIT--NLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 206 ~dl~~lr~~~--~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
+-|.++++.. ++|||+-| |.+..|+.+|+.+||+++.|+.
T Consensus 266 ~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr 308 (364)
T PLN02535 266 SVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGR 308 (364)
T ss_pred HHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 4566666543 69999999 9999999999999999999864
No 241
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=91.70 E-value=0.84 Score=43.27 Aligned_cols=41 Identities=12% Similarity=0.332 Sum_probs=34.3
Q ss_pred CHHHHHHHHhhc--CCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 204 SWKDIEWLRSIT--NLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 204 ~W~dl~~lr~~~--~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
+.+-|.++++.. ++|||+-| |.+..|+.+|+-+|++++.++
T Consensus 286 t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iG 329 (381)
T PRK11197 286 SARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLG 329 (381)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEh
Confidence 345566666543 69999999 999999999999999999885
No 242
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=91.68 E-value=1.2 Score=41.96 Aligned_cols=40 Identities=23% Similarity=0.429 Sum_probs=35.2
Q ss_pred CHHHHHHHHhhcCCCEEEEe-c------------------CCHHHHHHHHHcC-CCEEEE
Q 039466 204 SWKDIEWLRSITNLPILIKG-V------------------LTREDAIKAVEVG-VAGIIV 243 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKG-I------------------~s~eDA~~a~~~G-~dgI~V 243 (263)
.|+..+++|+.+++||++-| | .++++|+.+++.| ||.|.+
T Consensus 268 ~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~ 327 (361)
T cd04747 268 ELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAV 327 (361)
T ss_pred chhHHHHHHHHcCCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehh
Confidence 57778999999999999999 6 4999999999965 999876
No 243
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=91.49 E-value=6.1 Score=35.44 Aligned_cols=153 Identities=14% Similarity=0.160 Sum_probs=85.1
Q ss_pred cccCCcccCCChhHHHHHHHHHHCCCceeecCCCCccHHHHHHhccccccCHH---HHHHHHHHHHHcCCCEEEEccCCC
Q 039466 78 APTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNAAYKKRD---MAATLVQRAERNGFMALVLTADTP 154 (263)
Q Consensus 78 aP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~~~~d~~---~~~~li~ra~~aG~~al~vTvD~~ 154 (263)
+|-++++++-.+|=.-+.++.++.|+|.+.--....-++.+++... ++.=.. ...+|++.+.+.|- .|-+.-.
T Consensus 49 sp~sFqG~G~eeGL~iL~~vk~~~glpvvTeV~~~~~~~~vae~vD-ilQIgArn~rn~~LL~a~g~t~k---pV~lKrG 124 (258)
T TIGR01362 49 SIHSFRGPGLEEGLKILQKVKEEFGVPILTDVHESSQCEPVAEVVD-IIQIPAFLCRQTDLLVAAAKTGR---IVNVKKG 124 (258)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhhCc-EEEeCchhcchHHHHHHHhccCC---eEEecCC
Confidence 4667777654567778999999999999876666666777766643 111111 23577777666552 4444433
Q ss_pred CCcchHHHHhhhhhhhhhhhhhhccccCCCC-CCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEecCC-------
Q 039466 155 RLDRREADIKNKMIAQQLKNLEGLLSTKVTS-DTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLT------- 226 (263)
Q Consensus 155 ~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKGI~s------- 226 (263)
.... ..++.+..+ -+. ..+|-.- .-.-+. .+ ....-.++...+..+++. ++|||+---.+
T Consensus 125 ~~~t-~~e~l~aae-----yi~--~~Gn~~viLcERG~--tf-~y~r~~~D~~~ip~~k~~-~~PVi~DpSHsvq~pg~~ 192 (258)
T TIGR01362 125 QFLS-PWDMKNVVE-----KVL--STGNKNILLCERGT--SF-GYNNLVVDMRSLPIMREL-GCPVIFDATHSVQQPGGL 192 (258)
T ss_pred CcCC-HHHHHHHHH-----HHH--HcCCCcEEEEeCCC--Cc-CCCCcccchhhhHHHHhc-CCCEEEeCCccccCCCCC
Confidence 3211 112211110 000 0001000 000001 11 111112355678888886 89999975443
Q ss_pred -----------HHHHHHHHHcCCCEEEEcCC
Q 039466 227 -----------REDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 227 -----------~eDA~~a~~~G~dgI~VSNH 246 (263)
+.=|+.|+.+|+||+++=-|
T Consensus 193 g~~s~G~r~~v~~la~AAvA~GaDGl~iEvH 223 (258)
T TIGR01362 193 GGASGGLREFVPTLARAAVAVGIDGLFMETH 223 (258)
T ss_pred CCCCCCcHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 56678899999999999888
No 244
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=91.43 E-value=0.48 Score=41.78 Aligned_cols=43 Identities=23% Similarity=0.331 Sum_probs=39.3
Q ss_pred CCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 203 LSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 203 ~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
.+.+-|+.|.+..++||.+=| |-|.||+++++++||+-++|++
T Consensus 63 ~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt 106 (234)
T PRK13587 63 REFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGT 106 (234)
T ss_pred chHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECc
Confidence 456789999999999999988 9999999999999999999875
No 245
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=91.41 E-value=0.44 Score=44.87 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcC-CCEEEE
Q 039466 202 SLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVG-VAGIIV 243 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G-~dgI~V 243 (263)
.+.|+..+++|+.+++|||.-| |.+++++.++++.| +|.|.+
T Consensus 275 ~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~ 318 (370)
T cd02929 275 GHQEPYIKFVKQVTSKPVVGVGRFTSPDKMVEVVKSGILDLIGA 318 (370)
T ss_pred cccHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeee
Confidence 3457888999999999999998 89999999999976 999876
No 246
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=91.13 E-value=0.3 Score=47.30 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=37.3
Q ss_pred CHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEE
Q 039466 204 SWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIV 243 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~V 243 (263)
++++|+.+|+.+++||+-|= |.++-....|..+|+|+|.+
T Consensus 98 s~~~l~~vr~~v~~PvLrKDFiid~~QI~ea~~~GADavLL 138 (454)
T PRK09427 98 SFDFLPIVRAIVTQPILCKDFIIDPYQIYLARYYGADAILL 138 (454)
T ss_pred CHHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCchhH
Confidence 57899999999999999999 89999999999999999864
No 247
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.05 E-value=2.2 Score=40.29 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=27.4
Q ss_pred CCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 216 NLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 216 ~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
++|||.=| |.+..|+.+|+.+|||++++.
T Consensus 256 ~vpVIAdGGI~~~~diakAlalGAd~Vm~G 285 (368)
T PRK08649 256 YVHVIADGGIGTSGDIAKAIACGADAVMLG 285 (368)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCeeccc
Confidence 68999999 999999999999999999984
No 248
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.05 E-value=5 Score=34.05 Aligned_cols=41 Identities=22% Similarity=0.294 Sum_probs=35.3
Q ss_pred HHHHHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCCEEEEcC
Q 039466 205 WKDIEWLRSIT-NLPILIKGVLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 205 W~dl~~lr~~~-~lPiilKGI~s~eDA~~a~~~G~dgI~VSN 245 (263)
-+.|+.++... ++||+.=|=.+++++...+++|+++|-|++
T Consensus 140 ~~~l~~~~~~~~~ipvvaiGGI~~~n~~~~l~aGa~~vav~s 181 (187)
T PRK07455 140 ADYIKSLQGPLGHIPLIPTGGVTLENAQAFIQAGAIAVGLSG 181 (187)
T ss_pred HHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHHCCCeEEEEeh
Confidence 46688888888 599999985599999999999999998875
No 249
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=90.97 E-value=1.6 Score=41.31 Aligned_cols=28 Identities=21% Similarity=0.540 Sum_probs=27.0
Q ss_pred CCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 217 LPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 217 lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
+|||.=| |.+..|+.+|+.+|+|++++.
T Consensus 256 vpVIAdGGI~tg~di~kAlAlGAdaV~iG 284 (369)
T TIGR01304 256 VHVIADGGIETSGDLVKAIACGADAVVLG 284 (369)
T ss_pred ceEEEeCCCCCHHHHHHHHHcCCCEeeeH
Confidence 8999999 999999999999999999985
No 250
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=90.93 E-value=4.1 Score=35.56 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHhhcC--CCEEEEecCCHHHHHHHHHcCCCEEEEcCCCCCCCCCchhhh
Q 039466 201 PSLSWKDIEWLRSITN--LPILIKGVLTREDAIKAVEVGVAGIIVSNHGARQLDYTPATI 258 (263)
Q Consensus 201 ~~~~W~dl~~lr~~~~--lPiilKGI~s~eDA~~a~~~G~dgI~VSNHGGRqlD~~~~~i 258 (263)
.+++|++|..+++..+ .++-+=|=.++++.....+.|++-++| ||.+-++..|-
T Consensus 147 ~~~~~~~l~~ik~~~~~g~~vAVaGGI~~~~i~~~~~~~~~ivIv----GraIt~a~dp~ 202 (217)
T COG0269 147 KSWGEDDLEKIKKLSDLGAKVAVAGGITPEDIPLFKGIGADIVIV----GRAITGAKDPA 202 (217)
T ss_pred CCccHHHHHHHHHhhccCceEEEecCCCHHHHHHHhcCCCCEEEE----CchhcCCCCHH
Confidence 3566899999999887 699999989999999999999999987 56666665554
No 251
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=90.90 E-value=1.8 Score=47.43 Aligned_cols=39 Identities=18% Similarity=0.011 Sum_probs=30.6
Q ss_pred cccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCC
Q 039466 71 ISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFT 110 (263)
Q Consensus 71 ~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~ 110 (263)
+-.+|.++.|++..+. ++.-.++|+|+...|..+..|-.
T Consensus 857 I~~rf~~~aMSfGalS-~eA~~aLA~a~~~~G~~sntGEG 895 (1485)
T PRK11750 857 LFKRFDSAAMSIGALS-PEAHEALAIAMNRLGGRSNSGEG 895 (1485)
T ss_pred HhcccccccCCCCccC-HHHHHHHHHHHHHhCCceecCCC
Confidence 3345899999998875 67888999999999977655433
No 252
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=90.76 E-value=0.76 Score=40.19 Aligned_cols=45 Identities=13% Similarity=0.289 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEEcC
Q 039466 201 PSLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 201 ~~~~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~VSN 245 (263)
+....+-++|+++..++||+.=|=.+++++..+.++|++||-|..
T Consensus 149 ~p~gl~~l~~~~~~~~iPvvAIGGI~~~n~~~~~~~GA~giAvis 193 (221)
T PRK06512 149 HPRNLSLAEWWAEMIEIPCIVQAGSDLASAVEVAETGAEFVALER 193 (221)
T ss_pred CCCChHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHhCCCEEEEhH
Confidence 345678899999999999999997799999999999999998864
No 253
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.56 E-value=3.2 Score=35.21 Aligned_cols=70 Identities=21% Similarity=0.277 Sum_probs=47.5
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHH
Q 039466 127 KKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWK 206 (263)
Q Consensus 127 ~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 206 (263)
.+.+...++++.+-+.|++.+-++.+++. |.
T Consensus 21 ~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~-------------------------------------------------~~ 51 (187)
T PRK07455 21 PDLELGLQMAEAVAAGGMRLIEITWNSDQ-------------------------------------------------PA 51 (187)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCC-------------------------------------------------HH
Confidence 46667778888888889888888877532 22
Q ss_pred H-HHHHHhhcCCCEEEE--e-cCCHHHHHHHHHcCCCEEEEcCCCC
Q 039466 207 D-IEWLRSITNLPILIK--G-VLTREDAIKAVEVGVAGIIVSNHGA 248 (263)
Q Consensus 207 d-l~~lr~~~~lPiilK--G-I~s~eDA~~a~~~G~dgI~VSNHGG 248 (263)
+ ++.+++.. |++.. | ++..|++..|+++|+|+|+ |.|-+
T Consensus 52 e~~~~~~~~~--~~~~~g~gtvl~~d~~~~A~~~gAdgv~-~p~~~ 94 (187)
T PRK07455 52 ELISQLREKL--PECIIGTGTILTLEDLEEAIAAGAQFCF-TPHVD 94 (187)
T ss_pred HHHHHHHHhC--CCcEEeEEEEEcHHHHHHHHHcCCCEEE-CCCCC
Confidence 2 33444433 34422 2 6899999999999999884 55544
No 254
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.54 E-value=2 Score=37.65 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=48.3
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHH
Q 039466 127 KKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWK 206 (263)
Q Consensus 127 ~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 206 (263)
.|.+....+++.+.+.|++.+=||.++|.. -+
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~~tp~a------------------------------------------------~~ 55 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTNRGDFA------------------------------------------------HE 55 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCcH------------------------------------------------HH
Confidence 466777888888889999999999987531 02
Q ss_pred HHHHHHhhc--CCC--EEEEe-cCCHHHHHHHHHcCCCEEE
Q 039466 207 DIEWLRSIT--NLP--ILIKG-VLTREDAIKAVEVGVAGII 242 (263)
Q Consensus 207 dl~~lr~~~--~lP--iilKG-I~s~eDA~~a~~~G~dgI~ 242 (263)
.|+.|++.. +.| +|-=| |+++|+++.|+++|++-||
T Consensus 56 ~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiV 96 (222)
T PRK07114 56 VFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIV 96 (222)
T ss_pred HHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEE
Confidence 234444322 234 45555 8999999999999999664
No 255
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=90.50 E-value=0.77 Score=41.95 Aligned_cols=45 Identities=24% Similarity=0.466 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHhhc-CCCEEEEec--CCHHHHHHHHHcCCCEEEEcC
Q 039466 201 PSLSWKDIEWLRSIT-NLPILIKGV--LTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 201 ~~~~W~dl~~lr~~~-~lPiilKGI--~s~eDA~~a~~~G~dgI~VSN 245 (263)
+.++|+-|+.|++.. ++|+|+=|- .+.|+.+++++.|++.|=|+.
T Consensus 186 k~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~T 233 (293)
T PRK07315 186 EGLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNT 233 (293)
T ss_pred CcCCHHHHHHHHHhccCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcc
Confidence 468999999999999 599999999 999999999999999998764
No 256
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=90.48 E-value=1 Score=43.98 Aligned_cols=41 Identities=24% Similarity=0.367 Sum_probs=35.2
Q ss_pred CHHHHHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCCEEEEc
Q 039466 204 SWKDIEWLRSIT-NLPILIKGVLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 204 ~W~dl~~lr~~~-~lPiilKGI~s~eDA~~a~~~G~dgI~VS 244 (263)
-++-|++||+.. +++||.=-|-|.|.|+.+.++|||+|=|.
T Consensus 255 ~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 255 MLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred HHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEEC
Confidence 467799999988 57777766999999999999999998754
No 257
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=90.43 E-value=9.4 Score=34.37 Aligned_cols=153 Identities=14% Similarity=0.139 Sum_probs=85.5
Q ss_pred cccCCcccCCChhHHHHHHHHHHCCCceeecCCCCccHHHHHHhccccccCHH---HHHHHHHHHHHcCCCEEEEccCCC
Q 039466 78 APTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNAAYKKRD---MAATLVQRAERNGFMALVLTADTP 154 (263)
Q Consensus 78 aP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~~~~d~~---~~~~li~ra~~aG~~al~vTvD~~ 154 (263)
+|-+++++.-.+|=.-++++.++.|+|.+.--.....+|.+++...- +.=.. ...+|++.+.+.| -.|-+.-.
T Consensus 57 Sp~sFqG~G~eeGL~~L~~vk~~~GlpvvTeV~~~~~~~~v~~~~Di-lQIgArn~rn~~LL~a~g~t~---kpV~lKrG 132 (264)
T PRK05198 57 SIHSFRGPGLEEGLKILQEVKETFGVPVLTDVHEPEQAAPVAEVVDV-LQIPAFLCRQTDLLVAAAKTG---KVVNIKKG 132 (264)
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhhCcE-EEECchhcchHHHHHHHhccC---CeEEecCC
Confidence 46677777545677789999999999998777766677777776432 11111 2357777776665 24444433
Q ss_pred CCcchHHHHhhhhhhhhhhhhhhccccCCCC-CCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEecCC-------
Q 039466 155 RLDRREADIKNKMIAQQLKNLEGLLSTKVTS-DTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLT------- 226 (263)
Q Consensus 155 ~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKGI~s------- 226 (263)
... -..|+.+..+ -+. ..+|-+- .-.-+. .+ ....-.++...+..+++. ++|||+---.+
T Consensus 133 ~~~-t~~e~~~aae-----yi~--~~Gn~~vilcERG~--tf-~y~r~~~D~~~vp~~k~~-~lPVi~DpSHsvq~pg~~ 200 (264)
T PRK05198 133 QFL-APWDMKNVVD-----KVR--EAGNDKIILCERGT--SF-GYNNLVVDMRGLPIMRET-GAPVIFDATHSVQLPGGQ 200 (264)
T ss_pred CcC-CHHHHHHHHH-----HHH--HcCCCeEEEEeCCC--Cc-CCCCeeechhhhHHHhhC-CCCEEEeCCccccCCCCC
Confidence 321 1112221110 000 0001000 000000 11 111112355568888874 59999975443
Q ss_pred -----------HHHHHHHHHcCCCEEEEcCC
Q 039466 227 -----------REDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 227 -----------~eDA~~a~~~G~dgI~VSNH 246 (263)
+.=|+.|+.+|+||+++=-|
T Consensus 201 ~~~s~G~r~~v~~la~AAvA~GadGl~iEvH 231 (264)
T PRK05198 201 GGSSGGQREFVPVLARAAVAVGVAGLFIETH 231 (264)
T ss_pred CCCCCCcHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 56688889999999999888
No 258
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=90.40 E-value=0.57 Score=43.01 Aligned_cols=54 Identities=17% Similarity=0.144 Sum_probs=39.9
Q ss_pred HHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEEcCC--CCCCCCCchhhhcccc
Q 039466 205 WKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNH--GARQLDYTPATISALE 262 (263)
Q Consensus 205 W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~VSNH--GGRqlD~~~~~i~~Lp 262 (263)
++.++++++. +++++. =|.+.++|+++.++|+|+|+|.++ ||.. +..++++.||
T Consensus 99 ~~~i~~lk~~-g~~v~~-~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~--g~~~~~~ll~ 154 (307)
T TIGR03151 99 GKYIPRLKEN-GVKVIP-VVASVALAKRMEKAGADAVIAEGMESGGHI--GELTTMALVP 154 (307)
T ss_pred HHHHHHHHHc-CCEEEE-EcCCHHHHHHHHHcCCCEEEEECcccCCCC--CCCcHHHHHH
Confidence 3478888876 777776 389999999999999999999776 5542 2334555444
No 259
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=90.25 E-value=6 Score=34.24 Aligned_cols=36 Identities=22% Similarity=0.431 Sum_probs=29.2
Q ss_pred HHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEE
Q 039466 207 DIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIV 243 (263)
Q Consensus 207 dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~V 243 (263)
++-...+..++|++- |++|+-++..|.++|++.|=+
T Consensus 92 ~v~~~~~~~~i~~iP-G~~TptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 92 ELAKHAQDHGIPIIP-GVATPSEIMLALELGITALKL 127 (204)
T ss_pred HHHHHHHHcCCcEEC-CCCCHHHHHHHHHCCCCEEEE
Confidence 344445566888877 999999999999999998866
No 260
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=90.21 E-value=1.5 Score=41.08 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHhhc-CCCEEEEecC-----------------------CHHHHHHHHHcCCCEEEEcC
Q 039466 202 SLSWKDIEWLRSIT-NLPILIKGVL-----------------------TREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 202 ~~~W~dl~~lr~~~-~lPiilKGI~-----------------------s~eDA~~a~~~G~dgI~VSN 245 (263)
.++|+.|++|++.+ ++|+|+=|-. ..|+-++|++.|+.=|=|+.
T Consensus 211 ~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~T 278 (347)
T PRK09196 211 VLAIDRIKEIHARLPNTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDT 278 (347)
T ss_pred hccHHHHHHHHhcCCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceEEeCh
Confidence 48999999999999 7999999986 66999999999998886653
No 261
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=90.04 E-value=0.51 Score=42.94 Aligned_cols=74 Identities=23% Similarity=0.198 Sum_probs=54.8
Q ss_pred HHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCC-CCHHHHHHHH
Q 039466 134 TLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPS-LSWKDIEWLR 212 (263)
Q Consensus 134 ~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~W~dl~~lr 212 (263)
+..+-|+++||.++++.+-.|. |.+. .+ +-.. -+-++|+.++
T Consensus 28 ~~a~iae~~g~~~v~~~~~~ps------d~~~-------------------~g------------g~~Rm~~p~~I~aIk 70 (293)
T PRK04180 28 EQAKIAEEAGAVAVMALERVPA------DIRA-------------------AG------------GVARMADPKMIEEIM 70 (293)
T ss_pred HHHHHHHHhChHHHHHccCCCc------hHhh-------------------cC------------CeeecCCHHHHHHHH
Confidence 4467788999999888887764 2211 00 0011 1457899999
Q ss_pred hhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 213 SITNLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 213 ~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
+..++||+.|= |-+-.+|+.+.++|||-|.-|
T Consensus 71 ~~V~iPVigk~Righ~~Ea~~L~~~GvDiID~T 103 (293)
T PRK04180 71 DAVSIPVMAKARIGHFVEAQILEALGVDYIDES 103 (293)
T ss_pred HhCCCCeEEeehhhHHHHHHHHHHcCCCEEecc
Confidence 99999999996 778999999999999999633
No 262
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=90.01 E-value=1.7 Score=38.10 Aligned_cols=44 Identities=23% Similarity=0.373 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHhhcC--CCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 202 SLSWKDIEWLRSITN--LPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~--lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
..+-++++-+++..+ ++|..-| |.+.+||...+++|++-|=.|+
T Consensus 163 gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS~ 209 (221)
T PRK00507 163 GATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRLGTSA 209 (221)
T ss_pred CCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceEccCc
Confidence 357788999998887 4555554 9999999999999999886664
No 263
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=89.98 E-value=1.5 Score=45.25 Aligned_cols=38 Identities=8% Similarity=0.146 Sum_probs=33.7
Q ss_pred HHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcC-CCEEEE
Q 039466 206 KDIEWLRSITNLPILIKG-VLTREDAIKAVEVG-VAGIIV 243 (263)
Q Consensus 206 ~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G-~dgI~V 243 (263)
+..+.+|+.+++||+.-| |.++++|+++++.| ||.|.+
T Consensus 677 ~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~ 716 (765)
T PRK08255 677 PFADRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCAL 716 (765)
T ss_pred HHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeE
Confidence 346889999999999999 89999999999965 999987
No 264
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=89.89 E-value=0.91 Score=38.28 Aligned_cols=45 Identities=22% Similarity=0.416 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHhhc-CCCEEEEecCCHHHHHHHHHcCCCEEEEcC
Q 039466 201 PSLSWKDIEWLRSIT-NLPILIKGVLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 201 ~~~~W~dl~~lr~~~-~lPiilKGI~s~eDA~~a~~~G~dgI~VSN 245 (263)
+...|+.++++++.. ++||++=|=.+++++..+.+.|++||.|+.
T Consensus 136 ~~~g~~~l~~~~~~~~~~pv~a~GGI~~~~~~~~~~~G~~gva~~~ 181 (196)
T TIGR00693 136 PPAGVELLREIAATSIDIPIVAIGGITLENAAEVLAAGADGVAVVS 181 (196)
T ss_pred CCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEhH
Confidence 345899999999876 499999984489999999999999999853
No 265
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=89.76 E-value=0.74 Score=41.08 Aligned_cols=42 Identities=29% Similarity=0.355 Sum_probs=37.9
Q ss_pred CCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 203 LSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 203 ~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
.+.+-++.|.+.+++||++=| |-+.+|++++.+.|+++|+|+
T Consensus 61 ~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvig 103 (258)
T PRK01033 61 PNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSIN 103 (258)
T ss_pred ccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEC
Confidence 356789999999999999886 999999999999999999986
No 266
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=89.73 E-value=4 Score=39.07 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=36.2
Q ss_pred CHHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEEcC
Q 039466 204 SWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~VSN 245 (263)
.++.|+++++..++||++=|=.+.+.+..+++.|+++|+|+.
T Consensus 150 ~~~~l~~l~~~~~iPI~a~GGI~~~n~~~~l~aGAdgv~vGs 191 (430)
T PRK07028 150 PLELLKEVSEEVSIPIAVAGGLDAETAAKAVAAGADIVIVGG 191 (430)
T ss_pred hHHHHHHHHhhCCCcEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 467899999988999988873389999999999999999863
No 267
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=89.71 E-value=0.52 Score=42.71 Aligned_cols=39 Identities=28% Similarity=0.425 Sum_probs=32.3
Q ss_pred HHHHHHHhhcC--CCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 206 KDIEWLRSITN--LPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 206 ~dl~~lr~~~~--lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
..+.++++.++ +|||.=| |.|++||.+.+.+||++|.|.
T Consensus 232 ~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~ 273 (295)
T PF01180_consen 232 RWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVC 273 (295)
T ss_dssp HHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEES
T ss_pred HHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheec
Confidence 44666788888 9999888 999999999999999999875
No 268
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=89.60 E-value=0.85 Score=40.25 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=38.4
Q ss_pred CHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcCC
Q 039466 204 SWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSNH 246 (263)
+.+-|+.|.+..++||.+=| |-|.||++++++.||+-++++..
T Consensus 63 n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~ 106 (241)
T PRK14024 63 NRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTA 106 (241)
T ss_pred cHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECch
Confidence 45789999999999999988 99999999999999999987543
No 269
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=89.59 E-value=0.75 Score=39.70 Aligned_cols=90 Identities=19% Similarity=0.185 Sum_probs=56.4
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHH
Q 039466 127 KKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWK 206 (263)
Q Consensus 127 ~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 206 (263)
.+++...+..++++++||+++-++.-+|.. +... .++. .. -..++.+.-+
T Consensus 64 ~~~~~~~~aa~~~~~aG~d~ieln~g~p~~-~~~~---~~~G------------------------~~--l~~~~~~~~e 113 (231)
T cd02801 64 SDPETLAEAAKIVEELGADGIDLNMGCPSP-KVTK---GGAG------------------------AA--LLKDPELVAE 113 (231)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCCHH-HHhC---CCee------------------------eh--hcCCHHHHHH
Confidence 467777788899999999999999887642 1000 0000 00 0011222335
Q ss_pred HHHHHHhhcCCCEEEEecCCH---HH----HHHHHHcCCCEEEEcCC
Q 039466 207 DIEWLRSITNLPILIKGVLTR---ED----AIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 207 dl~~lr~~~~lPiilKGI~s~---eD----A~~a~~~G~dgI~VSNH 246 (263)
-++.+++..+.||.+|--... ++ ++.+.++|+|.|.|++.
T Consensus 114 ii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~ 160 (231)
T cd02801 114 IVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGR 160 (231)
T ss_pred HHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCC
Confidence 688999999899999953221 12 34455689999999654
No 270
>PRK04302 triosephosphate isomerase; Provisional
Probab=89.35 E-value=0.66 Score=40.38 Aligned_cols=39 Identities=23% Similarity=0.509 Sum_probs=32.4
Q ss_pred HHHHHhhc-CCCEEEEe-cCCHHHHHHHHHcCCCEEEEcCC
Q 039466 208 IEWLRSIT-NLPILIKG-VLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 208 l~~lr~~~-~lPiilKG-I~s~eDA~~a~~~G~dgI~VSNH 246 (263)
++.+|+.. +.||+.=| |.+++++.++.+.|+||++|.+.
T Consensus 164 ~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa 204 (223)
T PRK04302 164 VEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASG 204 (223)
T ss_pred HHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehH
Confidence 45677754 68999766 99999999999999999998653
No 271
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=89.23 E-value=5.9 Score=33.57 Aligned_cols=41 Identities=12% Similarity=0.273 Sum_probs=32.5
Q ss_pred CCHHHHHHHHhhcCC-CEE-EEecCCHHHHHHHHHcCCCEEEEc
Q 039466 203 LSWKDIEWLRSITNL-PIL-IKGVLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 203 ~~W~dl~~lr~~~~l-Pii-lKGI~s~eDA~~a~~~G~dgI~VS 244 (263)
..++.++++++..+. +|. .-|| +++++..+.++|+++++|+
T Consensus 144 ~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vG 186 (206)
T TIGR03128 144 NPFEDLQTILKLVKEARVAVAGGI-NLDTIPDVIKLGPDIVIVG 186 (206)
T ss_pred CCHHHHHHHHHhcCCCcEEEECCc-CHHHHHHHHHcCCCEEEEe
Confidence 356788888887764 554 4447 9999999999999999984
No 272
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=89.22 E-value=3.9 Score=38.43 Aligned_cols=38 Identities=21% Similarity=0.150 Sum_probs=33.5
Q ss_pred HHHHHHHhhcCCCEEEEecCCHHHHHHHHHcC-CCEEEE
Q 039466 206 KDIEWLRSITNLPILIKGVLTREDAIKAVEVG-VAGIIV 243 (263)
Q Consensus 206 ~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G-~dgI~V 243 (263)
...+.+|+.+++||++-|..++++|+.+++-| +|.|-+
T Consensus 282 ~~~~~ik~~~~~pv~~~G~~~~~~ae~~i~~G~~D~V~~ 320 (362)
T PRK10605 282 AFREKVRARFHGVIIGAGAYTAEKAETLIGKGLIDAVAF 320 (362)
T ss_pred HHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCCEEEE
Confidence 34578999999999999988999999999987 898876
No 273
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=89.13 E-value=3.8 Score=38.93 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=27.7
Q ss_pred CCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 216 NLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 216 ~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
++|||.=| |.+..|+.+|+.+|||+|.++.
T Consensus 285 ~i~viasGGI~~g~Dv~kalaLGAd~V~ig~ 315 (392)
T cd02808 285 RVSLIASGGLRTGADVAKALALGADAVGIGT 315 (392)
T ss_pred CCeEEEECCCCCHHHHHHHHHcCCCeeeech
Confidence 69999998 9999999999999999998753
No 274
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=89.12 E-value=2.8 Score=37.54 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEEcCC
Q 039466 202 SLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~VSNH 246 (263)
..+-++|+.+|+..+.||++-+=.++|-+.+.+++ |||++|+.+
T Consensus 186 ~~~~~~l~~vr~~~~~PVlvGSGvt~~Ni~~~l~~-ADG~IVGS~ 229 (254)
T PF03437_consen 186 PPDPEKLKRVREAVPVPVLVGSGVTPENIAEYLSY-ADGAIVGSY 229 (254)
T ss_pred CCCHHHHHHHHhcCCCCEEEecCCCHHHHHHHHHh-CCEEEEeee
Confidence 34678999999999999999887899999888876 999999876
No 275
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=89.11 E-value=0.92 Score=40.24 Aligned_cols=43 Identities=12% Similarity=-0.047 Sum_probs=38.3
Q ss_pred CHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcCC
Q 039466 204 SWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSNH 246 (263)
+.+-|+.+.+.+.+||.+=| |-|.||++.+++.|++-|+|++-
T Consensus 62 n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~ 105 (243)
T TIGR01919 62 NEMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTA 105 (243)
T ss_pred hHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECch
Confidence 45678999999999988877 99999999999999999998753
No 276
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=89.07 E-value=1.3 Score=40.41 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=33.0
Q ss_pred CHHHHHHHHhhc--CCCEEEEec--------CCHHH----HHHHHHcCCCEEEEcCCCC
Q 039466 204 SWKDIEWLRSIT--NLPILIKGV--------LTRED----AIKAVEVGVAGIIVSNHGA 248 (263)
Q Consensus 204 ~W~dl~~lr~~~--~lPiilKGI--------~s~eD----A~~a~~~G~dgI~VSNHGG 248 (263)
..+-++.+|+.+ +.||.+|=- .+.+| ++.+.+.|+|.|.||+-..
T Consensus 194 ~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~ 252 (327)
T cd02803 194 LLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSY 252 (327)
T ss_pred HHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCC
Confidence 456799999998 679998821 24566 4566678999999987543
No 277
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=89.04 E-value=0.84 Score=42.23 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=35.8
Q ss_pred HHHHHHHhhc-CCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 206 KDIEWLRSIT-NLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 206 ~dl~~lr~~~-~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
+.|..+++.. ++|||.-| |.+.+|+.+|+..|||++.++.
T Consensus 244 ~~l~~~~~~~~~ipIiasGGIr~~~dv~kal~lGAd~V~i~~ 285 (326)
T cd02811 244 ASLLEVRSALPDLPLIASGGIRNGLDIAKALALGADLVGMAG 285 (326)
T ss_pred HHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEcH
Confidence 4677777776 89999999 9999999999999999999986
No 278
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=88.93 E-value=0.52 Score=42.73 Aligned_cols=40 Identities=23% Similarity=0.313 Sum_probs=26.4
Q ss_pred HHHHHHhhcCCCEEEEec---CCHH---HHHHHHHcCCCEEEEcCC
Q 039466 207 DIEWLRSITNLPILIKGV---LTRE---DAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 207 dl~~lr~~~~lPiilKGI---~s~e---DA~~a~~~G~dgI~VSNH 246 (263)
-++++++.+++||++|== ...+ -+..+.+.|++||+..|-
T Consensus 153 i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt 198 (295)
T PF01180_consen 153 IVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINT 198 (295)
T ss_dssp HHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---
T ss_pred HHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecC
Confidence 467888899999999931 2332 244455789999998774
No 279
>PLN02858 fructose-bisphosphate aldolase
Probab=88.92 E-value=2.7 Score=46.22 Aligned_cols=44 Identities=23% Similarity=0.390 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHhhc---CCCEEEEec--CCHHHHHHHHHcCCCEEEEc
Q 039466 201 PSLSWKDIEWLRSIT---NLPILIKGV--LTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 201 ~~~~W~dl~~lr~~~---~lPiilKGI--~s~eDA~~a~~~G~dgI~VS 244 (263)
+.++|+-|++|++.+ ++|+++-|= ...|+-++|++.|+.=|=|.
T Consensus 1283 p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~~~~~~~ai~~Gi~KiNi~ 1331 (1378)
T PLN02858 1283 PNLRLDLLKELRALSSKKGVLLVLHGASGLPESLIKECIENGVRKFNVN 1331 (1378)
T ss_pred CccCHHHHHHHHHHhcCCCCcEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 678999999999999 799999996 67899999999999877554
No 280
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=88.76 E-value=3.2 Score=37.12 Aligned_cols=74 Identities=28% Similarity=0.349 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHH
Q 039466 128 KRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKD 207 (263)
Q Consensus 128 d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~d 207 (263)
|.+..+++++...+.|++++++.--+-- -..++|++
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~GstGE--------------------------------------------~~~ls~~E 51 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLGTTGE--------------------------------------------APTLTDEE 51 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcc--------------------------------------------cccCCHHH
Confidence 6677889999999999999886544311 02345543
Q ss_pred ----HHHHHhhc--CCCEEEEec--CC----HHHHHHHHHcCCCEEEEcCC
Q 039466 208 ----IEWLRSIT--NLPILIKGV--LT----REDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 208 ----l~~lr~~~--~lPiilKGI--~s----~eDA~~a~~~G~dgI~VSNH 246 (263)
++..++.. ++|||+ || .+ .+-|+.|.++|+|+|+|..-
T Consensus 52 r~~l~~~~~~~~~~~~~vi~-gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP 101 (281)
T cd00408 52 RKEVIEAVVEAVAGRVPVIA-GVGANSTREAIELARHAEEAGADGVLVVPP 101 (281)
T ss_pred HHHHHHHHHHHhCCCCeEEE-ecCCccHHHHHHHHHHHHHcCCCEEEECCC
Confidence 44455544 578775 56 23 34455677899999999653
No 281
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=88.68 E-value=2.1 Score=39.00 Aligned_cols=79 Identities=23% Similarity=0.408 Sum_probs=55.7
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCH
Q 039466 126 YKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSW 205 (263)
Q Consensus 126 ~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W 205 (263)
+.|++...+. +++.|+++|.|.+-+...... ....|.+++
T Consensus 154 ~TdP~~a~~F---v~~TgvD~LAvaiGt~HG~y~-------------------------------------~~~~p~Ld~ 193 (287)
T PF01116_consen 154 YTDPEEAKEF---VEETGVDALAVAIGTAHGMYK-------------------------------------GGKKPKLDF 193 (287)
T ss_dssp SSSHHHHHHH---HHHHTTSEEEE-SSSBSSSBS-------------------------------------SSSSTC--H
T ss_pred ccCHHHHHHH---HHHhCCCEEEEecCccccccC-------------------------------------CCCCcccCH
Confidence 4566655554 456899999999987531000 001467899
Q ss_pred HHHHHHHhhc-CCCEEEEec--CCHHHHHHHHHcCCCEEEEc
Q 039466 206 KDIEWLRSIT-NLPILIKGV--LTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 206 ~dl~~lr~~~-~lPiilKGI--~s~eDA~~a~~~G~dgI~VS 244 (263)
+-|++|++.. ++|+++=|= .+.|+.+++++.|+.=|=|+
T Consensus 194 ~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 235 (287)
T PF01116_consen 194 DRLKEIREAVPDIPLVLHGGSGLPDEQIRKAIKNGISKINIG 235 (287)
T ss_dssp HHHHHHHHHHHTSEEEESSCTTS-HHHHHHHHHTTEEEEEES
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHcCceEEEEe
Confidence 9999999999 999999996 78899999999998766543
No 282
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=88.61 E-value=2.6 Score=37.24 Aligned_cols=93 Identities=16% Similarity=0.194 Sum_probs=54.1
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHH
Q 039466 127 KKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWK 206 (263)
Q Consensus 127 ~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 206 (263)
.|.+...+.+++.+++|++.|=+.+ |.. .- +-.|-.+ ++. ..+....-..-...++
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~i--Pfs-dP---v~DG~~I---~~a---------------~~~al~~g~~~~~~~~ 66 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGI--PFS-DP---VADGPVI---QAA---------------SERALANGVTLKDVLE 66 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCC-CC---CCCCHHH---HHH---------------HHHHHHcCCCHHHHHH
Confidence 4567788889999999988876553 431 00 0000000 000 0111111111224567
Q ss_pred HHHHHHhhcCCCEEEEecCCH------H-HHHHHHHcCCCEEEE
Q 039466 207 DIEWLRSITNLPILIKGVLTR------E-DAIKAVEVGVAGIIV 243 (263)
Q Consensus 207 dl~~lr~~~~lPiilKGI~s~------e-DA~~a~~~G~dgI~V 243 (263)
.++++|+..+.|+++=.-.++ + =++.+.++|++||++
T Consensus 67 ~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giii 110 (242)
T cd04724 67 LVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLII 110 (242)
T ss_pred HHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEE
Confidence 899999988999887332332 3 366788999999998
No 283
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=88.56 E-value=2.5 Score=38.37 Aligned_cols=41 Identities=22% Similarity=0.108 Sum_probs=36.5
Q ss_pred CHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 204 SWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
+-++|+.|++..++|||.|= |-+-.+|+.+.++|||-|.=|
T Consensus 55 ~p~~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiIDeT 96 (287)
T TIGR00343 55 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDES 96 (287)
T ss_pred CHHHHHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEEEcc
Confidence 55899999999999999986 788999999999999999643
No 284
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=88.48 E-value=3.7 Score=38.29 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=22.6
Q ss_pred EEecCCHHHHHHHHHcCCCEEEEcC
Q 039466 221 IKGVLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 221 lKGI~s~eDA~~a~~~G~dgI~VSN 245 (263)
-.||.+++|+..+.++|+|||.|.-
T Consensus 294 ESGI~t~~Dv~~l~~~GadAvLVGE 318 (338)
T PLN02460 294 ESGLFTPDDVAYVQNAGVKAVLVGE 318 (338)
T ss_pred CCCCCCHHHHHHHHHCCCCEEEECH
Confidence 3689999999999999999999953
No 285
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=88.47 E-value=1.2 Score=38.92 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=34.7
Q ss_pred CHHHHHHHHhhcCCCEEEEe-c--CCHHH----HHHHHHcCCCEEEEc
Q 039466 204 SWKDIEWLRSITNLPILIKG-V--LTRED----AIKAVEVGVAGIIVS 244 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKG-I--~s~eD----A~~a~~~G~dgI~VS 244 (263)
+.+.++++++..++|+++=| | .+.+| +..+.++|++||.++
T Consensus 167 ~~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg 214 (235)
T cd00958 167 DAESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG 214 (235)
T ss_pred CHHHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 67889999999999998866 5 57766 888999999999874
No 286
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=88.46 E-value=7.1 Score=34.41 Aligned_cols=39 Identities=26% Similarity=0.476 Sum_probs=32.6
Q ss_pred HHHHHHHHhhcCCCEEEEe-----cCCHHH-HHHHHHcCCCEEEE
Q 039466 205 WKDIEWLRSITNLPILIKG-----VLTRED-AIKAVEVGVAGIIV 243 (263)
Q Consensus 205 W~dl~~lr~~~~lPiilKG-----I~s~eD-A~~a~~~G~dgI~V 243 (263)
++.++.+|+.+++|+++=. +..+++ +..+.++|+|+|.+
T Consensus 63 ~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii 107 (244)
T PRK13125 63 WPLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLF 107 (244)
T ss_pred HHHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEE
Confidence 8899999999999986422 457787 78888999999998
No 287
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=88.36 E-value=0.71 Score=39.45 Aligned_cols=44 Identities=23% Similarity=0.437 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcC-CCEEEEcCC
Q 039466 201 PSLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVG-VAGIIVSNH 246 (263)
Q Consensus 201 ~~~~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G-~dgI~VSNH 246 (263)
..++|+.+++++ .++|+++=|=++++....+++.| ++||.||+.
T Consensus 139 ~~~~~~~l~~~~--~~~PvilaGGI~~~Nv~~~i~~~~~~gvdv~S~ 183 (203)
T cd00405 139 KTFDWSLLRGLA--SRKPVILAGGLTPDNVAEAIRLVRPYGVDVSSG 183 (203)
T ss_pred ceEChHHhhccc--cCCCEEEECCCChHHHHHHHHhcCCCEEEcCCc
Confidence 457999998887 67999999955999999999999 999999864
No 288
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=88.28 E-value=8 Score=36.76 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=27.1
Q ss_pred CCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 216 NLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 216 ~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
++|||.=| |.+.+||.+.+.+||+.|.|..
T Consensus 270 ~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~T 300 (385)
T PLN02495 270 DRSLSGIGGVETGGDAAEFILLGADTVQVCT 300 (385)
T ss_pred CCcEEEECCCCCHHHHHHHHHhCCCceeEee
Confidence 48999888 9999999999999999998754
No 289
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=88.18 E-value=7.7 Score=36.08 Aligned_cols=93 Identities=22% Similarity=0.226 Sum_probs=64.7
Q ss_pred HHHHHHHHHCCCceeecCCCCccHHHHHHhccccccCHHHHHHHHHHHHHcCCC---EEEEccCCCCCcchHHHHhhhhh
Q 039466 92 VATARAAASCNTIMVLSFTSSCSIEEVAASCNAAYKKRDMAATLVQRAERNGFM---ALVLTADTPRLDRREADIKNKMI 168 (263)
Q Consensus 92 ~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~~~~d~~~~~~li~ra~~aG~~---al~vTvD~~~~g~R~~d~r~~~~ 168 (263)
..+-+.+++.|.|++||+.. .+++||..+ ++..++.|.. -++++.-+. |+
T Consensus 123 ~pLL~~~A~~gkPvilStGm-atl~Ei~~A--------------v~~i~~~G~~~~~i~llhC~s~------------YP 175 (329)
T TIGR03569 123 APLLKKIARFGKPVILSTGM-ATLEEIEAA--------------VGVLRDAGTPDSNITLLHCTTE------------YP 175 (329)
T ss_pred HHHHHHHHhcCCcEEEECCC-CCHHHHHHH--------------HHHHHHcCCCcCcEEEEEECCC------------CC
Confidence 47899999999999999998 488888654 3344466765 333332221 11
Q ss_pred hhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCE
Q 039466 169 AQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAG 240 (263)
Q Consensus 169 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dg 240 (263)
. ....++-..|.+|++.+++||..-+ -....-+..|+..||+-
T Consensus 176 ~-----------------------------~~~~~nL~~I~~Lk~~f~~pVG~SdHt~G~~~~~aAvalGA~i 219 (329)
T TIGR03569 176 A-----------------------------PFEDVNLNAMDTLKEAFDLPVGYSDHTLGIEAPIAAVALGATV 219 (329)
T ss_pred C-----------------------------CcccCCHHHHHHHHHHhCCCEEECCCCccHHHHHHHHHcCCCE
Confidence 1 1123566789999999999998866 45567778888999993
No 290
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=88.15 E-value=2 Score=39.99 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=29.6
Q ss_pred hhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 213 SITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 213 ~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
...++|||.=| |.+.-|..+|+.+|+|++++.+
T Consensus 209 ~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~ 242 (343)
T TIGR01305 209 HGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGG 242 (343)
T ss_pred ccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECH
Confidence 34578999999 9999999999999999999973
No 291
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=88.02 E-value=1.7 Score=40.12 Aligned_cols=40 Identities=25% Similarity=0.355 Sum_probs=34.3
Q ss_pred HHHHHHHHhhcC--CCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 205 WKDIEWLRSITN--LPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 205 W~dl~~lr~~~~--lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
-.-++.+++.++ +|||-=| |.|.+||.+-+.+||+.+.|-
T Consensus 228 l~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~ 270 (310)
T COG0167 228 LRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVG 270 (310)
T ss_pred HHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheee
Confidence 355777778866 9999888 999999999999999998764
No 292
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=88.01 E-value=3.2 Score=38.89 Aligned_cols=43 Identities=16% Similarity=0.341 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHhhc-CCCEEEEecCC-----------------------HHHHHHHHHcCCCEEEEc
Q 039466 202 SLSWKDIEWLRSIT-NLPILIKGVLT-----------------------REDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 202 ~~~W~dl~~lr~~~-~lPiilKGI~s-----------------------~eDA~~a~~~G~dgI~VS 244 (263)
.++|+.|++|++.+ ++|+|+=|-.. .|+-++|++.|+.=|=|+
T Consensus 209 ~Ld~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi~ 275 (347)
T TIGR01521 209 VLAIQRIEEIHARLPDTHLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGVRKVNID 275 (347)
T ss_pred hcCHHHHHHHHccCCCCCEEEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCCeeEEeC
Confidence 48999999999999 79999999753 689999999999877654
No 293
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=87.94 E-value=1 Score=39.93 Aligned_cols=41 Identities=24% Similarity=0.489 Sum_probs=34.8
Q ss_pred HHHHHHHHhhcCCCEE---EEecCCHHHHHHHHHcCCCEEEEcC
Q 039466 205 WKDIEWLRSITNLPIL---IKGVLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 205 W~dl~~lr~~~~lPii---lKGI~s~eDA~~a~~~G~dgI~VSN 245 (263)
++-++.+++.-+||++ .-||-||.||.+..++|+|||.|.+
T Consensus 195 ~elv~~~~~~grLPVvnFAAGGvATPADAALMM~LGadGVFVGS 238 (296)
T COG0214 195 YELVKEVAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGS 238 (296)
T ss_pred HHHHHHHHHhCCCCeEeecccCcCChhHHHHHHHhCCCeEEecc
Confidence 4567788888889976 4579999999999999999999964
No 294
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=87.84 E-value=2.7 Score=40.69 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=27.2
Q ss_pred CCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 216 NLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 216 ~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
++|||.=| |.+++++..|...|+|||++.
T Consensus 224 ~VpViAAGGI~t~~~vaAAlaLGAdgV~~G 253 (444)
T TIGR02814 224 PIRVGAAGGIGTPEAAAAAFMLGADFIVTG 253 (444)
T ss_pred CceEEEeCCCCCHHHHHHHHHcCCcEEEec
Confidence 78999997 999999999999999999984
No 295
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=87.78 E-value=1.1 Score=40.12 Aligned_cols=41 Identities=12% Similarity=0.090 Sum_probs=38.0
Q ss_pred CHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 204 SWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
+++-|+.|.+.+++||.+=| |-+ |+++..+++||+.++|++
T Consensus 64 n~~~i~~i~~~~~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS 105 (253)
T TIGR02129 64 NDDAAKEALHAYPGGLQVGGGIND-TNAQEWLDEGASHVIVTS 105 (253)
T ss_pred cHHHHHHHHHhCCCCEEEeCCcCH-HHHHHHHHcCCCEEEECc
Confidence 77889999999999999998 876 999999999999999976
No 296
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=87.33 E-value=21 Score=34.35 Aligned_cols=154 Identities=14% Similarity=0.124 Sum_probs=77.6
Q ss_pred ccCCcccccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCCCCccHHHH-------HHhcc-c------cc---c
Q 039466 65 STLDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEV-------AASCN-A------AY---K 127 (263)
Q Consensus 65 ~~lG~~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV-------~~~~~-~------~~---~ 127 (263)
++||- ..|++-+||+. +. ....++.+..++|..-++++.. .++++| ++..+ + ++ .
T Consensus 8 ~~lgi--ryPii~gpMa~-Gi----ss~eLVaAvs~AGgLG~lgag~-l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~ 79 (418)
T cd04742 8 EDYGL--RYAYVAGAMAR-GI----ASAELVVAMGKAGMLGFFGAGG-LPLDEVEQAIERIQAALGNGEPYGVNLIHSPD 79 (418)
T ss_pred HHhCC--CccEECCcccC-CC----CCHHHHHHHHhCCCeeeecCCC-CCHHHHHHHHHHHHHhccCCCCeEEeeecCCC
Confidence 35554 58999999972 12 2346788888888766676544 455554 33211 2 22 2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEc--cCC-CCCcchHHHHhhhhhhhhhhhhhhccccC--CCCCCCccHHHHHHHhcCCC
Q 039466 128 KRDMAATLVQRAERNGFMALVLT--ADT-PRLDRREADIKNKMIAQQLKNLEGLLSTK--VTSDTGSNLEAYAKETMDPS 202 (263)
Q Consensus 128 d~~~~~~li~ra~~aG~~al~vT--vD~-~~~g~R~~d~r~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 202 (263)
+++...++++-..+.|++.+... .+. |.. .|.++ .|+..- ... .+...+ +... +..+..+..+ +.
T Consensus 80 ~~~~e~~~v~l~le~gV~~ve~sa~~~~~p~~-~~~r~--~G~~~~--~~g-~~~~~~~ViakV---sr~evAs~~f-~p 149 (418)
T cd04742 80 EPELEEGLVDLFLRHGVRVVEASAFMQLTPAL-VRYRA--KGLRRD--ADG-RVQIANRIIAKV---SRPEVAEAFM-SP 149 (418)
T ss_pred CchhHHHHHHHHHHcCCCEEEeccccCCCcch-hhHHh--cCCccc--ccc-cccccceEEEec---CChhhhhhhc-CC
Confidence 33444566777777787654432 111 110 01110 000000 000 000000 0000 0011111112 23
Q ss_pred CCHHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcC-CCEEEEc
Q 039466 203 LSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVG-VAGIIVS 244 (263)
Q Consensus 203 ~~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G-~dgI~VS 244 (263)
..=+.|+.|.+. |++|+++|++|.+.| +|.|+|-
T Consensus 150 pp~~~v~~L~~~--------G~it~~eA~~A~~~g~aD~Ivvq 184 (418)
T cd04742 150 APERILKKLLAE--------GKITEEQAELARRVPVADDITVE 184 (418)
T ss_pred CCHHHHHHHHHc--------CCCCHHHHHHHHhCCCCCEEEEc
Confidence 344668888776 666999999999999 5999986
No 297
>PRK08999 hypothetical protein; Provisional
Probab=87.05 E-value=1.6 Score=39.68 Aligned_cols=45 Identities=29% Similarity=0.350 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEEcC
Q 039466 201 PSLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 201 ~~~~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~VSN 245 (263)
+.+.|+.++++++..++||+.=|=.+++++..+.++|++||-|..
T Consensus 265 ~~~g~~~~~~~~~~~~~Pv~AiGGI~~~~~~~~~~~g~~gva~i~ 309 (312)
T PRK08999 265 APLGWEGFAALIAGVPLPVYALGGLGPGDLEEAREHGAQGIAGIR 309 (312)
T ss_pred CCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHhCCCEEEEEE
Confidence 456899999999999999999983399999999999999998753
No 298
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=86.94 E-value=1.9 Score=37.80 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcCCC
Q 039466 202 SLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSNHG 247 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSNHG 247 (263)
..+.+.|+.+.+.+.+|+.+=| |-+.||++++++.||+-|+|+.--
T Consensus 64 ~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~ 110 (233)
T cd04723 64 GDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTET 110 (233)
T ss_pred CccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEccee
Confidence 3456789999999999999988 999999999999999999997644
No 299
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=86.85 E-value=3.5 Score=36.91 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=24.0
Q ss_pred CEEEEecCCHHHHHHHHHcCCCEEEEcC
Q 039466 218 PILIKGVLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 218 PiilKGI~s~eDA~~a~~~G~dgI~VSN 245 (263)
=|.--||.+++|+++..++|++|+.|..
T Consensus 210 ~IsESGI~~~~dv~~l~~~ga~a~LVG~ 237 (254)
T COG0134 210 LISESGISTPEDVRRLAKAGADAFLVGE 237 (254)
T ss_pred EEecCCCCCHHHHHHHHHcCCCEEEecH
Confidence 3455679999999999999999999853
No 300
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=86.80 E-value=5.7 Score=35.44 Aligned_cols=143 Identities=13% Similarity=0.105 Sum_probs=73.1
Q ss_pred HHHHHHHHHCCCceeec-----CCCCccHHHHHHhcc--c---cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHH
Q 039466 92 VATARAAASCNTIMVLS-----FTSSCSIEEVAASCN--A---AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREA 161 (263)
Q Consensus 92 ~a~AraA~~~gi~~~ls-----s~s~~sieeV~~~~~--~---~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~ 161 (263)
..+|+..++.|... +| .+...+++++..... . +.+|-=.....|.+|..+|++++.+-+..-. . .
T Consensus 64 ~~~A~~y~~~GA~a-ISVlTe~~~F~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~--~--~ 138 (247)
T PRK13957 64 VQIAKTYETLGASA-ISVLTDQSYFGGSLEDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILLIVRILT--P--S 138 (247)
T ss_pred HHHHHHHHHCCCcE-EEEEcCCCcCCCCHHHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCC--H--H
Confidence 37888888888744 44 234567787754432 1 3444434455577788899999988877532 1 1
Q ss_pred HHhhhhhhh---hhhhhhhcccc-CCC---CCCCccHHHHHHHhcCC-----CCCHHHHHHHHhhcC---CCEEEEecCC
Q 039466 162 DIKNKMIAQ---QLKNLEGLLST-KVT---SDTGSNLEAYAKETMDP-----SLSWKDIEWLRSITN---LPILIKGVLT 226 (263)
Q Consensus 162 d~r~~~~~p---~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~-----~~~W~dl~~lr~~~~---lPiilKGI~s 226 (263)
+++.-+... ++.-+...|.. .++ ..+. ..++ .... ..+-+.-..|....+ +.|---||.+
T Consensus 139 ~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga----~iiG-INnRdL~t~~vd~~~~~~L~~~ip~~~~~IsESGI~t 213 (247)
T PRK13957 139 QIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGA----EIIG-INTRDLDTFQIHQNLVEEVAAFLPPNIVKVGESGIES 213 (247)
T ss_pred HHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCC----CEEE-EeCCCCccceECHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence 122111111 11111000000 000 0000 0000 0001 112344555666553 2244478999
Q ss_pred HHHHHHHHHcCCCEEEEcC
Q 039466 227 REDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 227 ~eDA~~a~~~G~dgI~VSN 245 (263)
++|+.++.+. +||+.|..
T Consensus 214 ~~d~~~l~~~-~davLvG~ 231 (247)
T PRK13957 214 RSDLDKFRKL-VDAALIGT 231 (247)
T ss_pred HHHHHHHHHh-CCEEEECH
Confidence 9999999887 99999853
No 301
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=86.74 E-value=3.7 Score=38.48 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHhhc-CCCEEEEecCC-----------------------HHHHHHHHHcCCCEEEEcC
Q 039466 202 SLSWKDIEWLRSIT-NLPILIKGVLT-----------------------REDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 202 ~~~W~dl~~lr~~~-~lPiilKGI~s-----------------------~eDA~~a~~~G~dgI~VSN 245 (263)
.++|+.|++|++.+ ++|+|+=|-.. .|+-++|++.|+.=|=|+.
T Consensus 211 ~L~~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KINi~T 278 (347)
T PRK13399 211 ILAIDRIEEIHARLPNTHLVMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVRKVNIDT 278 (347)
T ss_pred hccHHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCeEEEeCh
Confidence 38999999999999 79999999753 6899999999998886543
No 302
>PTZ00413 lipoate synthase; Provisional
Probab=86.51 E-value=9 Score=36.45 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=17.4
Q ss_pred CCChhHHHHHHHHHHCCCceeecC
Q 039466 86 ANPEGEVATARAAASCNTIMVLSF 109 (263)
Q Consensus 86 ~~~~ge~a~AraA~~~gi~~~lss 109 (263)
..++.=...|+++++.|+-|++=|
T Consensus 177 lD~eEp~~vA~av~~~Gl~~~VVT 200 (398)
T PTZ00413 177 LDPNEPEKVAKAVAEMGVDYIVMT 200 (398)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEE
Confidence 344555589999999999776543
No 303
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=86.38 E-value=1.4 Score=38.49 Aligned_cols=40 Identities=25% Similarity=0.476 Sum_probs=31.7
Q ss_pred HHHHHHHhhcCCCEE---EEecCCHHHHHHHHHcCCCEEEEcC
Q 039466 206 KDIEWLRSITNLPIL---IKGVLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 206 ~dl~~lr~~~~lPii---lKGI~s~eDA~~a~~~G~dgI~VSN 245 (263)
+-++.-++.-++|++ .-||-+|.||.+..++||||+.|..
T Consensus 197 dLv~~t~q~GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGS 239 (296)
T KOG1606|consen 197 DLVKQTKQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGS 239 (296)
T ss_pred HHHHHHHHcCCCceEEecccCcCChhHHHHHHHcCCCeEEecc
Confidence 345555556678876 4579999999999999999999965
No 304
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=86.35 E-value=3.6 Score=37.40 Aligned_cols=39 Identities=21% Similarity=0.115 Sum_probs=34.2
Q ss_pred CHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEE
Q 039466 204 SWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGII 242 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~ 242 (263)
+-++|+.|++..++|||.|= +-.-.+|..+.++|||-|.
T Consensus 53 ~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiID 92 (283)
T cd04727 53 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMID 92 (283)
T ss_pred CHHHHHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEEe
Confidence 45899999999999999774 5668999999999999885
No 305
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=86.30 E-value=1.2 Score=37.58 Aligned_cols=39 Identities=23% Similarity=0.300 Sum_probs=31.4
Q ss_pred HHHHHHHhhcC-----CCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 206 KDIEWLRSITN-----LPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 206 ~dl~~lr~~~~-----lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
+.++++|+.++ .|+++=| |- +|++..+.+.|+|+|+|+.
T Consensus 151 ~~i~~~~~~~~~~~~~~pi~v~GGI~-~env~~~~~~gad~iivgs 195 (211)
T cd00429 151 EKIRKLRELIPENNLNLLIEVDGGIN-LETIPLLAEAGADVLVAGS 195 (211)
T ss_pred HHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEECH
Confidence 45677777664 8997766 65 6999999999999999874
No 306
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=86.26 E-value=4.8 Score=41.19 Aligned_cols=144 Identities=12% Similarity=0.070 Sum_probs=73.0
Q ss_pred HHHHHHHHHCCCceeecCC-----CCccHHHHHHhcc--c---cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHH
Q 039466 92 VATARAAASCNTIMVLSFT-----SSCSIEEVAASCN--A---AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREA 161 (263)
Q Consensus 92 ~a~AraA~~~gi~~~lss~-----s~~sieeV~~~~~--~---~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~ 161 (263)
..+|+.-.+.|. -++|-. ...|++++.+... . +.||-=+....|.+|+.+|++++.+.+..-. . .
T Consensus 73 ~~~a~~y~~~GA-~aiSVlTe~~~F~Gs~~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GADavLLI~~~L~--~--~ 147 (695)
T PRK13802 73 AALAREYEQGGA-SAISVLTEGRRFLGSLDDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHGADLVLLIVAALD--D--A 147 (695)
T ss_pred HHHHHHHHHcCC-cEEEEecCcCcCCCCHHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCEeehhHhhcC--H--H
Confidence 367777777775 334433 2457777654432 2 3455434456678888999999998888532 1 1
Q ss_pred HHhhhhhhh---hhhhhhhcccc-CCC---CCCCccHHHHHHHhcCCC-----CCHHHHHHHHhhcC--CC-EEEEecCC
Q 039466 162 DIKNKMIAQ---QLKNLEGLLST-KVT---SDTGSNLEAYAKETMDPS-----LSWKDIEWLRSITN--LP-ILIKGVLT 226 (263)
Q Consensus 162 d~r~~~~~p---~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~-----~~W~dl~~lr~~~~--lP-iilKGI~s 226 (263)
++..-+... ++.-+...+.. .++ ..+. ..++ ....+ .+-+.-..|+...+ .. |---||.+
T Consensus 148 ~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga----~iiG-INnRdL~tf~vd~~~t~~L~~~ip~~~~~VsESGI~~ 222 (695)
T PRK13802 148 QLKHLLDLAHELGMTVLVETHTREEIERAIAAGA----KVIG-INARNLKDLKVDVNKYNELAADLPDDVIKVAESGVFG 222 (695)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCC----CEEE-EeCCCCccceeCHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence 222111111 11111000000 000 0000 0000 00011 12334455555443 22 33368999
Q ss_pred HHHHHHHHHcCCCEEEEcC
Q 039466 227 REDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 227 ~eDA~~a~~~G~dgI~VSN 245 (263)
++|++.+.++|+|||.|..
T Consensus 223 ~~d~~~l~~~G~davLIGe 241 (695)
T PRK13802 223 AVEVEDYARAGADAVLVGE 241 (695)
T ss_pred HHHHHHHHHCCCCEEEECH
Confidence 9999999999999999953
No 307
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=86.04 E-value=0.68 Score=41.01 Aligned_cols=32 Identities=31% Similarity=0.325 Sum_probs=27.2
Q ss_pred HHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEEcCCCCC
Q 039466 207 DIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNHGAR 249 (263)
Q Consensus 207 dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~VSNHGGR 249 (263)
.++|+.+. ..+||.+..+.|+|||+|.|||-.
T Consensus 28 ~~~~vid~-----------A~~dA~~leegG~DavivEN~gD~ 59 (263)
T COG0434 28 SLEAVIDR-----------AVRDAAALEEGGVDAVIVENYGDA 59 (263)
T ss_pred CHHHHHHH-----------HHHHHHHHHhCCCcEEEEeccCCC
Confidence 57777775 367999999999999999999964
No 308
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=85.93 E-value=13 Score=32.32 Aligned_cols=34 Identities=18% Similarity=0.356 Sum_probs=26.1
Q ss_pred HHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEE
Q 039466 208 IEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIV 243 (263)
Q Consensus 208 l~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~V 243 (263)
+++-+ ..++|++ =|++|+.++..|.++|++-|-|
T Consensus 101 i~~a~-~~~i~~i-PG~~TptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 101 LKAAQ-EGPIPLI-PGVSTPSELMLGMELGLRTFKF 134 (212)
T ss_pred HHHHH-HcCCCEe-CCCCCHHHHHHHHHCCCCEEEE
Confidence 44433 3555554 3999999999999999999887
No 309
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=85.89 E-value=6.7 Score=35.38 Aligned_cols=92 Identities=16% Similarity=0.180 Sum_probs=56.9
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCC--CCccHHHHHHHhcCCCCC
Q 039466 127 KKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSD--TGSNLEAYAKETMDPSLS 204 (263)
Q Consensus 127 ~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 204 (263)
.|.+.+.++++...++|+++|=+.+=.. -| +.++ -..++.+....-....-.
T Consensus 28 P~~e~s~e~i~~L~~~GaD~iELGvPfS--------------DP------------vADGP~Iq~A~~rAL~~g~t~~~~ 81 (265)
T COG0159 28 PDLETSLEIIKTLVEAGADILELGVPFS--------------DP------------VADGPTIQAAHLRALAAGVTLEDT 81 (265)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEecCCCC--------------Cc------------CccCHHHHHHHHHHHHCCCCHHHH
Confidence 4667888999999999998877655321 11 0000 001111222211222235
Q ss_pred HHHHHHHHhh-cCCCEEEEecCC------HHH-HHHHHHcCCCEEEEc
Q 039466 205 WKDIEWLRSI-TNLPILIKGVLT------RED-AIKAVEVGVAGIIVS 244 (263)
Q Consensus 205 W~dl~~lr~~-~~lPiilKGI~s------~eD-A~~a~~~G~dgI~VS 244 (263)
|+-++.+|+. .+.|+++=+-.+ .|. .++|.+.|+||++|-
T Consensus 82 lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivp 129 (265)
T COG0159 82 LELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVP 129 (265)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeC
Confidence 6778889855 889999988533 344 678999999999974
No 310
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=85.86 E-value=5 Score=35.73 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=10.4
Q ss_pred HHHHHcCCCEEEEccCC
Q 039466 137 QRAERNGFMALVLTADT 153 (263)
Q Consensus 137 ~ra~~aG~~al~vTvD~ 153 (263)
+-+..+||+.++|..-.
T Consensus 27 e~~a~~G~D~v~iD~EH 43 (249)
T TIGR03239 27 EVLGLAGFDWLLLDGEH 43 (249)
T ss_pred HHHHhcCCCEEEEeccc
Confidence 33346788887765553
No 311
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=85.70 E-value=5.9 Score=36.14 Aligned_cols=73 Identities=21% Similarity=0.215 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHH
Q 039466 128 KRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKD 207 (263)
Q Consensus 128 d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~d 207 (263)
|.+..+++++...+.|++.|++.--+-- + ..++.++
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~GstGE--------------------------------------~------~~Lt~eE 61 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAGGTGE--------------------------------------F------FSLTPDE 61 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcC--------------------------------------c------ccCCHHH
Confidence 6667889999999999999885433211 0 2233332
Q ss_pred ----HHHHHhhc--CCCEEEEecC-----CHHHHHHHHHcCCCEEEEcC
Q 039466 208 ----IEWLRSIT--NLPILIKGVL-----TREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 208 ----l~~lr~~~--~lPiilKGI~-----s~eDA~~a~~~G~dgI~VSN 245 (263)
++..++.. ++|||+ ||. +.+-++.|.++|+|+|+|..
T Consensus 62 r~~~~~~~~~~~~~~~pvi~-gv~~~t~~~i~~~~~a~~~Gadav~~~p 109 (303)
T PRK03620 62 YSQVVRAAVETTAGRVPVIA-GAGGGTAQAIEYAQAAERAGADGILLLP 109 (303)
T ss_pred HHHHHHHHHHHhCCCCcEEE-ecCCCHHHHHHHHHHHHHhCCCEEEECC
Confidence 44454544 479887 763 34445667778999999854
No 312
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=85.69 E-value=8.3 Score=37.68 Aligned_cols=40 Identities=18% Similarity=0.132 Sum_probs=32.2
Q ss_pred cccccceeecccCCcccCCChhHHHHHHHHHHCCCceeecC
Q 039466 69 YKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSF 109 (263)
Q Consensus 69 ~~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss 109 (263)
..+..||.++.|.+..+. ++.-.++|+++.+.|..+-.|-
T Consensus 163 ~~i~~~~~~~aMS~GAlS-~eA~~alA~a~~~~G~~sntGE 202 (485)
T COG0069 163 LELKKRFVTGAMSFGALS-KEAHEALARAMNRIGTKSNTGE 202 (485)
T ss_pred ceeeecccccccCCcccc-HHHHHHHHHHHHHhcCcccCCC
Confidence 556789999999998886 7788899999999996554433
No 313
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=85.67 E-value=1.4 Score=40.71 Aligned_cols=41 Identities=15% Similarity=0.428 Sum_probs=32.7
Q ss_pred CHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 204 SWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
++.-+..+++..++|||.=| |.+.+++..|+..||+||++.
T Consensus 178 ~~~L~~~v~~~~~iPViaAGGI~dg~~iaaal~lGA~gV~~G 219 (330)
T PF03060_consen 178 TFSLLPQVRDAVDIPVIAAGGIADGRGIAAALALGADGVQMG 219 (330)
T ss_dssp HHHHHHHHHHH-SS-EEEESS--SHHHHHHHHHCT-SEEEES
T ss_pred eeeHHHHHhhhcCCcEEEecCcCCHHHHHHHHHcCCCEeecC
Confidence 46678899999999999999 999999999999999999874
No 314
>PRK08185 hypothetical protein; Provisional
Probab=85.67 E-value=4.3 Score=36.95 Aligned_cols=169 Identities=17% Similarity=0.176 Sum_probs=92.4
Q ss_pred cccccceeecccCCcccCCChhHH-HHH-HHHHHCCCceeecCCCCccHHHHHHhcc-c------------cccCHHHHH
Q 039466 69 YKISASIIIAPTGLHKLANPEGEV-ATA-RAAASCNTIMVLSFTSSCSIEEVAASCN-A------------AYKKRDMAA 133 (263)
Q Consensus 69 ~~~~~Pi~iaP~~~~~l~~~~ge~-a~A-raA~~~gi~~~lss~s~~sieeV~~~~~-~------------~~~d~~~~~ 133 (263)
.+...|++|.=.-... -+...+. .++ ..|+++.+|.+|---=..++|.|.++.. | .-.|.+.++
T Consensus 34 ee~~sPvIl~~~~~~~-~~~~~~~~~~~~~~a~~~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~ 112 (283)
T PRK08185 34 EANNAPAIIAIHPNEL-DFLGDNFFAYVRERAKRSPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGSLLPYEENVALTK 112 (283)
T ss_pred HHhCCCEEEEeCcchh-hhccHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHH
Confidence 3456787764332221 1111233 333 3567789998887655568888876543 2 223556899
Q ss_pred HHHHHHHHcCCCE---EEEccCCC----CCcchHHHHhhhhhhh-hhhhhhhc-cccCCCCCCCccHHHHHHHhcCCCCC
Q 039466 134 TLVQRAERNGFMA---LVLTADTP----RLDRREADIKNKMIAQ-QLKNLEGL-LSTKVTSDTGSNLEAYAKETMDPSLS 204 (263)
Q Consensus 134 ~li~ra~~aG~~a---l~vTvD~~----~~g~R~~d~r~~~~~p-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (263)
++++.|.+.|+.- |.. +-.. ..+. ..+. +.-| ....+... ...-+...-++.++-|.. ...+.++
T Consensus 113 ~vv~~a~~~gv~vE~ElG~-vg~~e~~~~~~~-~~~~---~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~-~~kp~L~ 186 (283)
T PRK08185 113 EVVELAHKVGVSVEGELGT-IGNTGTSIEGGV-SEII---YTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPK-DKKPELQ 186 (283)
T ss_pred HHHHHHHHcCCeEEEEEee-ccCccccccccc-cccc---CCCHHHHHHHHHhhCCCEEEeccCcccCCcCC-CCCCCcC
Confidence 9999999877543 222 2110 0011 0000 1112 11111100 000000011111222211 1146789
Q ss_pred HHHHHHHHhhcCCCEEEEec--CCHHHHHHHHHcCCCEEEEc
Q 039466 205 WKDIEWLRSITNLPILIKGV--LTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 205 W~dl~~lr~~~~lPiilKGI--~s~eDA~~a~~~G~dgI~VS 244 (263)
|+-|++|++.+++|+++=|- ...|+-++|++.|+.=|=|.
T Consensus 187 ~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~ 228 (283)
T PRK08185 187 MDLLKEINERVDIPLVLHGGSANPDAEIAESVQLGVGKINIS 228 (283)
T ss_pred HHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCCCeEEEeC
Confidence 99999999999999999994 67899999999999877554
No 315
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=85.66 E-value=7.2 Score=35.20 Aligned_cols=74 Identities=20% Similarity=0.182 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHHc-CCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHH
Q 039466 128 KRDMAATLVQRAERN-GFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWK 206 (263)
Q Consensus 128 d~~~~~~li~ra~~a-G~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 206 (263)
|.+..+++++...+. |++.+++.--+-- + ..++.+
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~~GstGE-------------------------------------------~-~~Lt~~ 54 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYVNGSTGE-------------------------------------------G-FLLSVE 54 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECcCCcC-------------------------------------------c-ccCCHH
Confidence 667788999999888 9999886554321 0 223332
Q ss_pred H----HHHHHhhcC--CCEEEEecC--C----HHHHHHHHHcCCCEEEEcCC
Q 039466 207 D----IEWLRSITN--LPILIKGVL--T----REDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 207 d----l~~lr~~~~--lPiilKGI~--s----~eDA~~a~~~G~dgI~VSNH 246 (263)
+ ++..++..+ +|||+ ||. + .+-|+.|.+.|+|+|+|..-
T Consensus 55 Er~~~~~~~~~~~~~~~~via-gv~~~~~~~ai~~a~~a~~~Gad~v~~~~P 105 (288)
T cd00954 55 ERKQIAEIVAEAAKGKVTLIA-HVGSLNLKESQELAKHAEELGYDAISAITP 105 (288)
T ss_pred HHHHHHHHHHHHhCCCCeEEe-ccCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 2 344444433 57776 884 2 45556777899999997543
No 316
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=85.63 E-value=16 Score=30.04 Aligned_cols=115 Identities=17% Similarity=0.061 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHCCCceeecCCCCccHHHHHHhcc--c------cc-cC----HHHHHHHHHHHHHcCCCEEEEccCCCC
Q 039466 89 EGEVATARAAASCNTIMVLSFTSSCSIEEVAASCN--A------AY-KK----RDMAATLVQRAERNGFMALVLTADTPR 155 (263)
Q Consensus 89 ~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~--~------~~-~d----~~~~~~li~ra~~aG~~al~vTvD~~~ 155 (263)
+.-..+++.+.+.|+.-++-.. .-++.+.+..+ . +- .+ .+.+.+.+++|+++|++++.++...-
T Consensus 13 ~~~~~~~~~~~~~gv~gi~~~g--~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~- 89 (201)
T cd00945 13 EDIAKLCDEAIEYGFAAVCVNP--GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIG- 89 (201)
T ss_pred HHHHHHHHHHHHhCCcEEEECH--HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHH-
Confidence 3444677777777764433222 23444443322 1 11 12 45677888999999999999876420
Q ss_pred CcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhh--cCCCEEEEec---C-CHHH
Q 039466 156 LDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSI--TNLPILIKGV---L-TRED 229 (263)
Q Consensus 156 ~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~--~~lPiilKGI---~-s~eD 229 (263)
+ .| ..+...-.+.++.+++. .++|++++=+ . +++.
T Consensus 90 -----------~-~~---------------------------~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~ 130 (201)
T cd00945 90 -----------S-LK---------------------------EGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADE 130 (201)
T ss_pred -----------H-Hh---------------------------CCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHH
Confidence 0 00 00001123556777777 5899998765 2 5666
Q ss_pred HHH----HHHcCCCEEEEcC
Q 039466 230 AIK----AVEVGVAGIIVSN 245 (263)
Q Consensus 230 A~~----a~~~G~dgI~VSN 245 (263)
..+ +.+.|+++|-+|.
T Consensus 131 ~~~~~~~~~~~g~~~iK~~~ 150 (201)
T cd00945 131 IAKAARIAAEAGADFIKTST 150 (201)
T ss_pred HHHHHHHHHHhCCCEEEeCC
Confidence 544 4578999998876
No 317
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=85.52 E-value=6.7 Score=35.47 Aligned_cols=25 Identities=20% Similarity=0.120 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccC
Q 039466 128 KRDMAATLVQRAERNGFMALVLTAD 152 (263)
Q Consensus 128 d~~~~~~li~ra~~aG~~al~vTvD 152 (263)
|.+.+++++++..+.|++++++.--
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~Gs 43 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAAGG 43 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcC
Confidence 6677889999999999999886544
No 318
>PRK08005 epimerase; Validated
Probab=85.28 E-value=8.7 Score=33.39 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=32.8
Q ss_pred CHHHHHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCCEEEEc
Q 039466 204 SWKDIEWLRSITN-LPILIKGVLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 204 ~W~dl~~lr~~~~-lPiilKGI~s~eDA~~a~~~G~dgI~VS 244 (263)
..+.|+++|+..+ ..|-+=|=.+.+.+.+++++|||.+|++
T Consensus 150 ~~~KI~~l~~~~~~~~I~VDGGI~~~~i~~l~~aGad~~V~G 191 (210)
T PRK08005 150 MCEKVSQSREHFPAAECWADGGITLRAARLLAAAGAQHLVIG 191 (210)
T ss_pred HHHHHHHHHHhcccCCEEEECCCCHHHHHHHHHCCCCEEEEC
Confidence 4567888777643 3688889889999999999999977764
No 319
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=85.09 E-value=4.9 Score=35.15 Aligned_cols=39 Identities=13% Similarity=0.079 Sum_probs=33.4
Q ss_pred CCHHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEE
Q 039466 203 LSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIV 243 (263)
Q Consensus 203 ~~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~V 243 (263)
.+++.++.++. +++|.+=-|-++++++++.+.|||||+-
T Consensus 190 ~~~~~v~~~~~--g~~v~~WTVn~~~~~~~l~~~GVdgIiT 228 (235)
T cd08565 190 ATWELVRAAVP--GLRLGVWTVNDDSLIRYWLACGVRQLTT 228 (235)
T ss_pred CCHHHHHHHhC--CCEEEEEccCCHHHHHHHHHcCCCEEEe
Confidence 46777777753 8999998899999999999999999963
No 320
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=85.03 E-value=2 Score=44.24 Aligned_cols=46 Identities=17% Similarity=0.328 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHhhcC---CCEEEEecCCHHHHHHHHHcCCCEEEEcCC
Q 039466 201 PSLSWKDIEWLRSITN---LPILIKGVLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 201 ~~~~W~dl~~lr~~~~---lPiilKGI~s~eDA~~a~~~G~dgI~VSNH 246 (263)
+.+.|+.++|+++..+ +||+.=|=.+++++..+.++|++||-|+..
T Consensus 148 ~~lG~~~l~~~~~~~~~~~iPv~AiGGI~~~~~~~~~~~Ga~giAvisa 196 (755)
T PRK09517 148 PALGVDGIAEIAAVAQDHGIASVAIGGVGLRNAAELAATGIDGLCVVSA 196 (755)
T ss_pred CCCCHHHHHHHHHhcCcCCCCEEEECCCCHHHHHHHHHcCCCEEEEehH
Confidence 3579999999999998 999999977999999999999999998764
No 321
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=84.80 E-value=36 Score=32.14 Aligned_cols=107 Identities=11% Similarity=0.039 Sum_probs=58.0
Q ss_pred cccceecccccccccccccc----ccCCcccccceeecccCCcccCCChhHHHHHHHHHHCCCcee-----ecCCCCccH
Q 039466 45 HGITFWPRILVDVCRIDIST----STLDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMV-----LSFTSSCSI 115 (263)
Q Consensus 45 ~~~~l~pr~L~~v~~~d~st----~~lG~~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~-----lss~s~~si 115 (263)
-+++|-|..++...-+...+ +++|.. .-|++.+-+==.++- |+.=..++..+...|+-++ ++++..+++
T Consensus 95 ~D~~~p~~~~~~f~GP~~Gi~g~R~~lgv~-~rPl~~tiiKP~GL~-~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~ 172 (364)
T cd08210 95 VDFELPPSLLRRFPGPRFGIAGLRALLGIP-ERPLLCSALKPQGLS-AAELAELAYAFALGGIDIIKDDHGLADQPFAPF 172 (364)
T ss_pred EEecCCHHHHhcCCCCCCChHHHHHHhCCC-CCceEEEEeccccCC-HHHHHHHHHHHHhcCCCeeecCccccCccCCCH
Confidence 34555555555444333222 345533 556653322111331 3333366777777887776 666777888
Q ss_pred HHHH--------Hhc---cc-------cccCHHHHHHHHHHHHHcCCCEEEEccCC
Q 039466 116 EEVA--------ASC---NA-------AYKKRDMAATLVQRAERNGFMALVLTADT 153 (263)
Q Consensus 116 eeV~--------~~~---~~-------~~~d~~~~~~li~ra~~aG~~al~vTvD~ 153 (263)
||=. ++. ++ +-.+.+.+.+..++|+++|+.+++|..-+
T Consensus 173 ~eRv~~v~~av~~a~~eTG~~~~y~~Nita~~~em~~ra~~a~~~Ga~~vMv~~~~ 228 (364)
T cd08210 173 EERVKACQEAVAEANAETGGRTLYAPNVTGPPTQLLERARFAKEAGAGGVLIAPGL 228 (364)
T ss_pred HHHHHHHHHHHHHHHhhcCCcceEEEecCCCHHHHHHHHHHHHHcCCCEEEeeccc
Confidence 8721 111 11 33455566666777778898888865553
No 322
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=84.76 E-value=6.2 Score=36.98 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHhhc---------CCCEEEEec--CCHHHHHHHHHcCCCEEEEc
Q 039466 200 DPSLSWKDIEWLRSIT---------NLPILIKGV--LTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 200 ~~~~~W~dl~~lr~~~---------~lPiilKGI--~s~eDA~~a~~~G~dgI~VS 244 (263)
.+.++|+-|+.|++.+ ++|+++-|- .+.|+.++|+++|+.=|=|.
T Consensus 224 ~p~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGipde~i~~ai~~GI~KINi~ 279 (350)
T PRK09197 224 NVKLRPEILKDSQEYVSKKFGLPAKPFDFVFHGGSGSTLEEIREAVSYGVVKMNID 279 (350)
T ss_pred CCccCHHHHHHHHHHHHHhhCCCCCCCCEEEeCCCCCCHHHHHHHHHCCCeeEEeC
Confidence 4778999999999999 899999997 68899999999999877654
No 323
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=84.62 E-value=26 Score=32.00 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=49.8
Q ss_pred cceeecccCCcccCCChhHHHHHHHHHHCCCc--eeecCCC---CccHHH-------HHHhccc-------c-ccCHHHH
Q 039466 73 ASIIIAPTGLHKLANPEGEVATARAAASCNTI--MVLSFTS---SCSIEE-------VAASCNA-------A-YKKRDMA 132 (263)
Q Consensus 73 ~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~--~~lss~s---~~siee-------V~~~~~~-------~-~~d~~~~ 132 (263)
.|.++.|+.-.+-.+.++-..+.+-.-+.|+- +++||.+ +.|.|| +.+...+ . -.+-+.+
T Consensus 9 i~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~ea 88 (299)
T COG0329 9 IPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEA 88 (299)
T ss_pred eeccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHH
Confidence 57777887754445556666777777777754 4445443 346665 2233322 1 1244667
Q ss_pred HHHHHHHHHcCCCEEEEcc
Q 039466 133 ATLVQRAERNGFMALVLTA 151 (263)
Q Consensus 133 ~~li~ra~~aG~~al~vTv 151 (263)
.++.+.|++.|++++++..
T Consensus 89 i~lak~a~~~Gad~il~v~ 107 (299)
T COG0329 89 IELAKHAEKLGADGILVVP 107 (299)
T ss_pred HHHHHHHHhcCCCEEEEeC
Confidence 8889999999999988754
No 324
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=84.55 E-value=4.6 Score=37.87 Aligned_cols=69 Identities=12% Similarity=0.178 Sum_probs=56.4
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHH
Q 039466 127 KKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWK 206 (263)
Q Consensus 127 ~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 206 (263)
.|-+.+.+.+++.+++||+-+=|+|.... .-+
T Consensus 39 ~Dv~atv~Qi~~L~~aGceiVRvav~~~~------------------------------------------------~a~ 70 (360)
T PRK00366 39 ADVEATVAQIKRLARAGCEIVRVAVPDME------------------------------------------------AAA 70 (360)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEccCCHH------------------------------------------------HHH
Confidence 45567778899999999998888776310 114
Q ss_pred HHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEE
Q 039466 207 DIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIV 243 (263)
Q Consensus 207 dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~V 243 (263)
.|++|+++.++|+|.--=++..=|..|++.|+|+|=+
T Consensus 71 al~~I~~~~~iPlvADIHFd~~lAl~a~~~G~~~iRI 107 (360)
T PRK00366 71 ALPEIKKQLPVPLVADIHFDYRLALAAAEAGADALRI 107 (360)
T ss_pred hHHHHHHcCCCCEEEecCCCHHHHHHHHHhCCCEEEE
Confidence 6788999999999998779999999999999999854
No 325
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=84.35 E-value=7.1 Score=35.66 Aligned_cols=74 Identities=26% Similarity=0.358 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHH
Q 039466 128 KRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKD 207 (263)
Q Consensus 128 d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~d 207 (263)
|.+.+++++++..+.|+++|++-=-+- | .+.+|.++
T Consensus 23 D~~a~~~lv~~li~~Gv~gi~~~GttG--------------------------------------E------~~~Ls~eE 58 (299)
T COG0329 23 DEEALRRLVEFLIAAGVDGLVVLGTTG--------------------------------------E------SPTLTLEE 58 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCc--------------------------------------c------chhcCHHH
Confidence 667788999999999999988532221 0 13345543
Q ss_pred ----HHHHHhhcC--CCEEEEecC------CHHHHHHHHHcCCCEEEEcCC
Q 039466 208 ----IEWLRSITN--LPILIKGVL------TREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 208 ----l~~lr~~~~--lPiilKGI~------s~eDA~~a~~~G~dgI~VSNH 246 (263)
++..++..+ +||| =|+- +.+-|+.|.+.|+|||+|...
T Consensus 59 r~~v~~~~v~~~~grvpvi-aG~g~~~t~eai~lak~a~~~Gad~il~v~P 108 (299)
T COG0329 59 RKEVLEAVVEAVGGRVPVI-AGVGSNSTAEAIELAKHAEKLGADGILVVPP 108 (299)
T ss_pred HHHHHHHHHHHHCCCCcEE-EecCCCcHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 444555554 6744 4662 456667777899999998764
No 326
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=84.30 E-value=12 Score=32.93 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=31.1
Q ss_pred HHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEE
Q 039466 206 KDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIV 243 (263)
Q Consensus 206 ~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~V 243 (263)
+.++++++. +++|.+=.|-+++++.++++.|+|||+.
T Consensus 209 ~~v~~~~~~-g~~v~~wTvn~~~~~~~l~~~Gvd~IiT 245 (256)
T cd08601 209 WMVHLIHKK-GLLVHPYTVNEKADMIRLINWGVDGMFT 245 (256)
T ss_pred HHHHHHHHC-CCEEEEEecCCHHHHHHHHhcCCCEEEe
Confidence 345666654 8999999999999999999999999864
No 327
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=84.19 E-value=2.6 Score=38.43 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHc-CCCEEE--EcCCCC
Q 039466 202 SLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEV-GVAGII--VSNHGA 248 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~-G~dgI~--VSNHGG 248 (263)
..+|+.+++|++.+++||+.-| +.+++|.+.+++. ++|.|. ++..||
T Consensus 214 ~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GG 264 (316)
T cd03319 214 AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGG 264 (316)
T ss_pred CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCC
Confidence 3479999999999999999988 7899999999984 577653 566776
No 328
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=83.81 E-value=3.2 Score=37.66 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHhhc--CCCEEEEecCCHHHHHHHHHcCCCEEEEcC--CCCCCCCC
Q 039466 201 PSLSWKDIEWLRSIT--NLPILIKGVLTREDAIKAVEVGVAGIIVSN--HGARQLDY 253 (263)
Q Consensus 201 ~~~~W~dl~~lr~~~--~lPiilKGI~s~eDA~~a~~~G~dgI~VSN--HGGRqlD~ 253 (263)
.++++++++++++.. ++|+.+-|=.+.+.+...++.|||+|.+|. |..+-+|-
T Consensus 216 D~~~~e~l~~~v~~~~~~i~leAsGGIt~~ni~~~a~tGvD~Isvg~lt~s~~~~D~ 272 (277)
T PRK05742 216 DELSLDDMREAVRLTAGRAKLEASGGINESTLRVIAETGVDYISIGAMTKDVKAVDL 272 (277)
T ss_pred CCCCHHHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHcCCCEEEEChhhcCCcccce
Confidence 468899999988866 789999986699999999999999999985 56666663
No 329
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=83.69 E-value=2.5 Score=37.43 Aligned_cols=42 Identities=26% Similarity=0.206 Sum_probs=36.7
Q ss_pred CCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 203 LSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 203 ~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
.+++-|+.|.+.+ .||.+=| |-|.||++++++.|++-|+|..
T Consensus 61 ~n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT 103 (241)
T PRK14114 61 ENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSS 103 (241)
T ss_pred chHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCCCEEEECc
Confidence 3567888998887 7988877 9999999999999999998865
No 330
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=83.60 E-value=5.7 Score=37.95 Aligned_cols=43 Identities=23% Similarity=0.376 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHhhcCCCEEEEec----CCHHHHHHHHHcCCCEEE
Q 039466 200 DPSLSWKDIEWLRSITNLPILIKGV----LTREDAIKAVEVGVAGII 242 (263)
Q Consensus 200 ~~~~~W~dl~~lr~~~~lPiilKGI----~s~eDA~~a~~~G~dgI~ 242 (263)
.|...++-++.|++.+++||.+--= ++.-...+|+++|||+|+
T Consensus 183 tP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylkAvEAGvD~iD 229 (472)
T COG5016 183 TPYEAYELVKAIKKELPVPVELHTHATSGMAEMTYLKAVEAGVDGID 229 (472)
T ss_pred ChHHHHHHHHHHHHhcCCeeEEecccccchHHHHHHHHHHhCcchhh
Confidence 3444567899999999999998752 677788999999999774
No 331
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=83.58 E-value=4.8 Score=37.58 Aligned_cols=39 Identities=15% Similarity=0.067 Sum_probs=33.4
Q ss_pred HHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 207 DIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 207 dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
+.......+++|||.-| |.+.-|..+|+-+|+|.+++.+
T Consensus 204 ~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGs 243 (346)
T PRK05096 204 ECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGG 243 (346)
T ss_pred HHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCEEEeCh
Confidence 34455567899999999 9999999999999999999854
No 332
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=83.45 E-value=10 Score=33.52 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=38.5
Q ss_pred CCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHc-CCCEEE--EcCCCC
Q 039466 203 LSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEV-GVAGII--VSNHGA 248 (263)
Q Consensus 203 ~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~-G~dgI~--VSNHGG 248 (263)
.+|+.++.|++.+++||.+=+ +.+++|++.+++. ++|.|. ++..||
T Consensus 167 ~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GG 216 (265)
T cd03315 167 DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGG 216 (265)
T ss_pred ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccC
Confidence 468899999999999999988 7899999999875 488554 567777
No 333
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=83.38 E-value=2.3 Score=36.03 Aligned_cols=43 Identities=19% Similarity=0.316 Sum_probs=31.7
Q ss_pred CCCHH---HHHHHHhhcC-----CCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 202 SLSWK---DIEWLRSITN-----LPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 202 ~~~W~---dl~~lr~~~~-----lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
.+.|. .++.+++..+ +|+++=| | +++++..+++.|+|+|+|+.
T Consensus 143 ~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI-~~env~~l~~~gad~iivgs 194 (210)
T TIGR01163 143 KFIPDTLEKIREVRKMIDENGLSILIEVDGGV-NDDNARELAEAGADILVAGS 194 (210)
T ss_pred cccHHHHHHHHHHHHHHHhcCCCceEEEECCc-CHHHHHHHHHcCCCEEEECh
Confidence 34554 4555555443 7887766 6 78999999999999999974
No 334
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=82.92 E-value=1.3 Score=40.67 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=31.4
Q ss_pred HHHHHhhc--CCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 208 IEWLRSIT--NLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 208 l~~lr~~~--~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
+..+++.. ++|||.=| |.|.+||.+.+.+||++|.|..
T Consensus 231 v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~t 271 (310)
T PRK02506 231 VRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGT 271 (310)
T ss_pred HHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhH
Confidence 44445666 68999998 9999999999999999997653
No 335
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=82.68 E-value=4 Score=35.91 Aligned_cols=40 Identities=30% Similarity=0.450 Sum_probs=27.5
Q ss_pred HHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcCCC
Q 039466 207 DIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSNHG 247 (263)
Q Consensus 207 dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSNHG 247 (263)
+++-||..-+.-+.--- |.|+++|+.+.++|+| |+|-|-|
T Consensus 145 Evemlr~A~~k~l~t~~yV~s~~eAqa~~~aGad-iiv~hmg 185 (276)
T COG5564 145 EVEMLREAHAKDLLTTPYVFSFEEAQAMTKAGAD-IIVAHMG 185 (276)
T ss_pred HHHHHHHHHhccccccceecCHHHHHHHHHcCcc-eeeeccc
Confidence 46666665443322222 6899999999999999 6676654
No 336
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=82.67 E-value=16 Score=32.81 Aligned_cols=44 Identities=23% Similarity=0.223 Sum_probs=33.2
Q ss_pred HHHHHHHhhcCCCEEEEec----CCHHHHHHHHHcCCCEEEE--cCCCCC
Q 039466 206 KDIEWLRSITNLPILIKGV----LTREDAIKAVEVGVAGIIV--SNHGAR 249 (263)
Q Consensus 206 ~dl~~lr~~~~lPiilKGI----~s~eDA~~a~~~G~dgI~V--SNHGGR 249 (263)
+-++++++.+++||-+=.= |...-+..|+++||+.|.+ .+-|+|
T Consensus 182 ~lv~~l~~~~~~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG~~ 231 (275)
T cd07937 182 ELVKALKKEVGLPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPLSGG 231 (275)
T ss_pred HHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccCC
Confidence 4578899988877754331 6777888999999999994 566666
No 337
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=82.59 E-value=15 Score=33.99 Aligned_cols=43 Identities=26% Similarity=0.392 Sum_probs=32.3
Q ss_pred CHHHHHHHHhhc--CCCEEEE--------ecCCHHHHHHH----HHcCCCEEEEcCC
Q 039466 204 SWKDIEWLRSIT--NLPILIK--------GVLTREDAIKA----VEVGVAGIIVSNH 246 (263)
Q Consensus 204 ~W~dl~~lr~~~--~lPiilK--------GI~s~eDA~~a----~~~G~dgI~VSNH 246 (263)
.-+-++.+|+.+ +.||.+| +=.+.+|+... .+.|+|.|-||.+
T Consensus 207 ~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g 263 (336)
T cd02932 207 LLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSG 263 (336)
T ss_pred HHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 346789999998 6899999 43467777553 3579999998864
No 338
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=82.40 E-value=7.4 Score=34.59 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=13.3
Q ss_pred HHHHHHcCCCEEEEccCCCC
Q 039466 136 VQRAERNGFMALVLTADTPR 155 (263)
Q Consensus 136 i~ra~~aG~~al~vTvD~~~ 155 (263)
++.+..+||+.+++..-..+
T Consensus 26 ~e~~~~~g~D~v~iDlEH~~ 45 (249)
T TIGR02311 26 AEICAGAGFDWLLIDGEHAP 45 (249)
T ss_pred HHHHHhcCCCEEEEeccCCC
Confidence 45556788888887665443
No 339
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=82.33 E-value=4.5 Score=35.05 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHhh-cCCCEEEEecCCHHHHHHHHHcCCCEEEEcC
Q 039466 201 PSLSWKDIEWLRSI-TNLPILIKGVLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 201 ~~~~W~dl~~lr~~-~~lPiilKGI~s~eDA~~a~~~G~dgI~VSN 245 (263)
+.+.|+.++.+++. .++||+.=|=.+++++..+.++|++||-|+.
T Consensus 142 ~~~G~~~l~~~~~~~~~~PV~AiGGI~~~ni~~l~~~Ga~GiAvis 187 (211)
T PRK03512 142 APQGLAQLARHVERLADYPTVAIGGISLERAPAVLATGVGSIAVVS 187 (211)
T ss_pred CCCCHHHHHHHHHhcCCCCEEEECCCCHHHHHHHHHcCCCEEEEhh
Confidence 45789999888776 5899999997789999999999999998864
No 340
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=82.30 E-value=1.8 Score=37.59 Aligned_cols=43 Identities=23% Similarity=0.491 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCC-CEEEEcC
Q 039466 201 PSLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGV-AGIIVSN 245 (263)
Q Consensus 201 ~~~~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~-dgI~VSN 245 (263)
..++|+-+..+ ....|+++=|=+++|.+.+|++.++ .||+||.
T Consensus 141 ~~fDW~~l~~~--~~~~~~~LAGGL~p~NV~~ai~~~~p~gvDvSS 184 (208)
T COG0135 141 QTFDWNLLPKL--RLSKPVMLAGGLNPDNVAEAIALGPPYGVDVSS 184 (208)
T ss_pred cEECHHHhccc--cccCCEEEECCCCHHHHHHHHHhcCCceEEecc
Confidence 35799988777 5678899999999999999999998 9999996
No 341
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=81.93 E-value=20 Score=34.18 Aligned_cols=42 Identities=17% Similarity=0.393 Sum_probs=35.8
Q ss_pred CCHHHHHHHHhh-cCCCEEEEecCCHHHHHHHHHcCCCEEEEc
Q 039466 203 LSWKDIEWLRSI-TNLPILIKGVLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 203 ~~W~dl~~lr~~-~~lPiilKGI~s~eDA~~a~~~G~dgI~VS 244 (263)
..|+.|+++|+. .+.+|.+=|=.++|++..++++|+|.++|.
T Consensus 316 ~~~~kI~~ikk~~~~~~I~VdGGI~~eti~~l~~aGADivVVG 358 (391)
T PRK13307 316 HAWGNIKEIKKAGGKILVAVAGGVRVENVEEALKAGADILVVG 358 (391)
T ss_pred chHHHHHHHHHhCCCCcEEEECCcCHHHHHHHHHcCCCEEEEe
Confidence 378999999985 467899998556999999999999998875
No 342
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=81.57 E-value=11 Score=35.48 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHH----HhhcCCC------EEEEec--CCHHHHHHHHHcCCCEEEEcC
Q 039466 200 DPSLSWKDIEWL----RSITNLP------ILIKGV--LTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 200 ~~~~~W~dl~~l----r~~~~lP------iilKGI--~s~eDA~~a~~~G~dgI~VSN 245 (263)
.+.++|+-|++| ++.+++| +|+=|= ...|+-++|+++|+.=|=|+.
T Consensus 231 ~p~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~kai~~GI~KINi~T 288 (357)
T TIGR01520 231 NVKLTPDILADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQEIKEALSYGVVKMNIDT 288 (357)
T ss_pred CCccCHHHHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHHHHHHHHHCCCeEEEeCc
Confidence 367899999999 5677888 999995 688999999999998886653
No 343
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=81.55 E-value=4.4 Score=35.66 Aligned_cols=42 Identities=19% Similarity=0.148 Sum_probs=35.8
Q ss_pred CHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 204 SWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
+.+-|+.+.+....||.+=| |-|.||++++++.|++-|+|+.
T Consensus 61 n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt 103 (232)
T PRK13586 61 NEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFST 103 (232)
T ss_pred hHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECc
Confidence 45778888885446999987 9999999999999999999865
No 344
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=81.43 E-value=32 Score=29.69 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=27.1
Q ss_pred HHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEE
Q 039466 208 IEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIV 243 (263)
Q Consensus 208 l~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~V 243 (263)
+-...+..++|++ =|++|+-++..|.++|++.|=+
T Consensus 89 vi~~a~~~~i~~i-PG~~TptEi~~A~~~Ga~~vK~ 123 (201)
T PRK06015 89 LLAAANDSDVPLL-PGAATPSEVMALREEGYTVLKF 123 (201)
T ss_pred HHHHHHHcCCCEe-CCCCCHHHHHHHHHCCCCEEEE
Confidence 3333445677655 4999999999999999998765
No 345
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=81.29 E-value=15 Score=32.85 Aligned_cols=42 Identities=24% Similarity=0.269 Sum_probs=31.0
Q ss_pred HHHHHHHhhcCCCEEEEec----CCHHHHHHHHHcCCCEEEEcCCC
Q 039466 206 KDIEWLRSITNLPILIKGV----LTREDAIKAVEVGVAGIIVSNHG 247 (263)
Q Consensus 206 ~dl~~lr~~~~lPiilKGI----~s~eDA~~a~~~G~dgI~VSNHG 247 (263)
+-++.|++.+++||-+=.= |...-+..|+++|++-|..|=.|
T Consensus 174 ~~~~~~~~~~~~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~s~~G 219 (262)
T cd07948 174 ELVRTLRGVVSCDIEFHGHNDTGCAIANAYAALEAGATHIDTTVLG 219 (262)
T ss_pred HHHHHHHHhcCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccc
Confidence 3467788888877744431 67788899999999988876544
No 346
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=81.17 E-value=18 Score=31.06 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEE
Q 039466 206 KDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGII 242 (263)
Q Consensus 206 ~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~ 242 (263)
+-++.+++.. -++.=-|.|.||++.|.++|+|-|-
T Consensus 83 ~li~~i~~~~--~l~MADist~ee~~~A~~~G~D~I~ 117 (192)
T PF04131_consen 83 ELIREIKEKY--QLVMADISTLEEAINAAELGFDIIG 117 (192)
T ss_dssp HHHHHHHHCT--SEEEEE-SSHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHhC--cEEeeecCCHHHHHHHHHcCCCEEE
Confidence 4478898887 4555559999999999999999763
No 347
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=81.14 E-value=11 Score=35.40 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHH----Hhhc------CCCEEEEec--CCHHHHHHHHHcCCCEEEEc
Q 039466 200 DPSLSWKDIEWL----RSIT------NLPILIKGV--LTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 200 ~~~~~W~dl~~l----r~~~------~lPiilKGI--~s~eDA~~a~~~G~dgI~VS 244 (263)
.+.++|+-|+.| ++.+ ++|+|+=|- .+.||.++|+++|+.=|=|.
T Consensus 219 ~p~L~~~~L~~I~~~i~~~~~~~~~~~ipLVLHGgSG~~~e~i~kai~~GI~KiNi~ 275 (345)
T cd00946 219 NVKLQPEILGEHQDYVREKLGLADDKPLYFVFHGGSGSTKEEIREAISYGVVKMNID 275 (345)
T ss_pred CCccCHHHHHHHHHHHHHhhccccCCCCCEEEeCCCCCCHHHHHHHHHcCCeeEEeC
Confidence 477899999999 5555 799999997 68899999999999877554
No 348
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=80.97 E-value=10 Score=33.94 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=9.9
Q ss_pred HHHHHcCCCEEEEccCC
Q 039466 137 QRAERNGFMALVLTADT 153 (263)
Q Consensus 137 ~ra~~aG~~al~vTvD~ 153 (263)
+-+..+||+.+++..-.
T Consensus 34 e~~a~~G~D~v~iD~EH 50 (256)
T PRK10558 34 EVLGLAGFDWLVLDGEH 50 (256)
T ss_pred HHHHhcCCCEEEEcccc
Confidence 33446777777755443
No 349
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=80.91 E-value=12 Score=33.07 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=32.0
Q ss_pred CHHHHHHHHhhc---C--CCEEEEecCCHHHHHHHHHcCCCEEEEcC
Q 039466 204 SWKDIEWLRSIT---N--LPILIKGVLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 204 ~W~dl~~lr~~~---~--lPiilKGI~s~eDA~~a~~~G~dgI~VSN 245 (263)
+.+.|+++|+.. + .-|-+=|=.+.+.+.+++++|||.+|+++
T Consensus 152 ~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V~Gs 198 (229)
T PRK09722 152 MLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFIVGT 198 (229)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 346677766543 2 44888887889999999999999888753
No 350
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=80.63 E-value=44 Score=31.52 Aligned_cols=86 Identities=17% Similarity=0.098 Sum_probs=49.0
Q ss_pred cCCcccccceeecccCCc-ccCCChhHHHHHHHHHHCCCcee-----ecCCCCccHHHH-------H-Hhc---cc----
Q 039466 66 TLDYKISASIIIAPTGLH-KLANPEGEVATARAAASCNTIMV-----LSFTSSCSIEEV-------A-ASC---NA---- 124 (263)
Q Consensus 66 ~lG~~~~~Pi~iaP~~~~-~l~~~~ge~a~AraA~~~gi~~~-----lss~s~~sieeV-------~-~~~---~~---- 124 (263)
++|. ..-|++.+|+--. ++ .++.-..++....+.|+-++ ++.+..++.||= . ++. +.
T Consensus 124 ~~gv-~~rPli~Ti~kp~~gl-d~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y 201 (367)
T cd08205 124 LLGV-HDRPLLGTIIKPSIGL-SPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLY 201 (367)
T ss_pred HhCC-CCCCeeeeeeCCCCCC-CHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceE
Confidence 4443 3677787776532 33 23333366666666786554 334445677761 1 111 11
Q ss_pred ---cccCHHHHHHHHHHHHHcCCCEEEEccCC
Q 039466 125 ---AYKKRDMAATLVQRAERNGFMALVLTADT 153 (263)
Q Consensus 125 ---~~~d~~~~~~li~ra~~aG~~al~vTvD~ 153 (263)
+-.+.+.+.+..+.|+++|+++++|..-.
T Consensus 202 ~~nit~~~~e~i~~a~~a~~~Gad~vmv~~~~ 233 (367)
T cd08205 202 APNITGDPDELRRRADRAVEAGANALLINPNL 233 (367)
T ss_pred EEEcCCCHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 22344566677777788999998866553
No 351
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=80.57 E-value=9.2 Score=32.58 Aligned_cols=41 Identities=22% Similarity=0.108 Sum_probs=34.2
Q ss_pred CHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 204 SWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
+-.-|++|.+..++|++.|- |-+--+|+.+-.+|+|.|+=|
T Consensus 59 DP~~I~eI~~aVsIPVMAK~RIGHfvEAqiLealgVD~IDES 100 (208)
T PF01680_consen 59 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDES 100 (208)
T ss_dssp -HHHHHHHHHH-SSEEEEEEETT-HHHHHHHHHTT-SEEEEE
T ss_pred CHHHHHHHHHheEeceeeccccceeehhhhHHHhCCceeccc
Confidence 34679999999999999999 999999999999999999876
No 352
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=80.56 E-value=15 Score=32.19 Aligned_cols=41 Identities=10% Similarity=0.201 Sum_probs=31.7
Q ss_pred CHHHHHHHHhhc-----CCCEEEEecCCHHHHHHHHHcCCCEEEEc
Q 039466 204 SWKDIEWLRSIT-----NLPILIKGVLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 204 ~W~dl~~lr~~~-----~lPiilKGI~s~eDA~~a~~~G~dgI~VS 244 (263)
..+.|+++|+.. +..|-+=|=.+.+.+.+++++|+|.+|+.
T Consensus 154 ~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~G 199 (223)
T PRK08745 154 ALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVAG 199 (223)
T ss_pred HHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 456677766642 24588888788999999999999988774
No 353
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=80.48 E-value=1.5 Score=40.82 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=31.0
Q ss_pred HHHHHHhhc--CCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 207 DIEWLRSIT--NLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 207 dl~~lr~~~--~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
.+..+++.. ++|||.=| |.++|||.+.+.+||+.|.|.
T Consensus 277 ~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ 317 (335)
T TIGR01036 277 IIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIY 317 (335)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhh
Confidence 455555555 58999777 999999999999999988664
No 354
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=80.46 E-value=2 Score=38.61 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=25.9
Q ss_pred CHHHHHHHHHcCCCEEEEcCCCCCCC--CCchhhh
Q 039466 226 TREDAIKAVEVGVAGIIVSNHGARQL--DYTPATI 258 (263)
Q Consensus 226 s~eDA~~a~~~G~dgI~VSNHGGRql--D~~~~~i 258 (263)
-.+||+...+.|+|||+|.|+|..-. +-.|.++
T Consensus 30 A~~ea~~l~~~GvD~viveN~~d~P~~~~~~p~tv 64 (257)
T TIGR00259 30 AWKDAMALEEGGVDAVMFENFFDAPFLKEVDPETV 64 (257)
T ss_pred HHHHHHHHHhCCCCEEEEecCCCCCCcCCCCHHHH
Confidence 35899999999999999999998655 4444443
No 355
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=80.42 E-value=4.2 Score=39.79 Aligned_cols=45 Identities=18% Similarity=0.389 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCC---EEEEcC
Q 039466 201 PSLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVA---GIIVSN 245 (263)
Q Consensus 201 ~~~~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~d---gI~VSN 245 (263)
+...|+.++|+++..++||+.=|=.+++++..++++|++ ||-|+.
T Consensus 429 ~~~g~~~~~~~~~~~~~Pv~aiGGI~~~~~~~~~~~G~~~~~gvav~~ 476 (502)
T PLN02898 429 KTIGLDGLREVCEASKLPVVAIGGISASNAASVMESGAPNLKGVAVVS 476 (502)
T ss_pred CCCCHHHHHHHHHcCCCCEEEECCCCHHHHHHHHHcCCCcCceEEEEe
Confidence 346899999999999999999996689999999999999 998764
No 356
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=80.19 E-value=4.9 Score=36.37 Aligned_cols=43 Identities=19% Similarity=0.246 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHhh--c---CCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 202 SLSWKDIEWLRSI--T---NLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 202 ~~~W~dl~~lr~~--~---~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
+++.++|+.+.+. . +..+.+-| | +++.+...++.|||.|+||.
T Consensus 210 n~~~e~l~~~v~~~~~~~~~~~ieAsGgI-t~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 210 NMSVEEIKEVVAYRNANYPHVLLEASGNI-TLENINAYAKSGVDAISSGS 258 (273)
T ss_pred CCCHHHHHHHHHHhhccCCCeEEEEECCC-CHHHHHHHHHcCCCEEEeCh
Confidence 4677888777775 2 34499998 6 99999999999999999985
No 357
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=80.14 E-value=21 Score=35.18 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=26.5
Q ss_pred CCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 217 LPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 217 lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
+|||.=| |.+.-|..+|+.+|||++++.
T Consensus 353 ~~viadgGir~~gdi~KAla~GA~~vm~G 381 (502)
T PRK07107 353 IPICSDGGIVYDYHMTLALAMGADFIMLG 381 (502)
T ss_pred ceEEEcCCCCchhHHHHHHHcCCCeeeeC
Confidence 8999999 999999999999999999974
No 358
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=80.07 E-value=14 Score=32.10 Aligned_cols=37 Identities=27% Similarity=0.305 Sum_probs=30.9
Q ss_pred HHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEE
Q 039466 206 KDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIV 243 (263)
Q Consensus 206 ~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~V 243 (263)
+.++++++ .++++.+=.|-++++++++.+.|||||+-
T Consensus 196 ~~v~~~~~-~Gl~v~vwTVn~~~~~~~l~~~GVdgiiT 232 (237)
T cd08583 196 KLIEKLNK-AGIYVYVYTINDLKDAQEYKKLGVYGIYT 232 (237)
T ss_pred HHHHHHHH-CCCEEEEEeCCCHHHHHHHHHcCCCEEEe
Confidence 34555554 58999999999999999999999999873
No 359
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=79.75 E-value=22 Score=29.81 Aligned_cols=75 Identities=13% Similarity=0.010 Sum_probs=48.5
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEccC-CCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCH
Q 039466 127 KKRDMAATLVQRAERNGFMALVLTAD-TPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSW 205 (263)
Q Consensus 127 ~d~~~~~~li~ra~~aG~~al~vTvD-~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W 205 (263)
.|.....+.++++.++|++.+-+.+- .+. . ....++.
T Consensus 9 ~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~-------------~-----------------------------~~~~~~~ 46 (211)
T cd00429 9 ADFANLGEELKRLEEAGADWIHIDVMDGHF-------------V-----------------------------PNLTFGP 46 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCC-------------C-----------------------------CccccCH
Confidence 46666778899999999988776321 110 0 0012456
Q ss_pred HHHHHHHhhcCCCEE--EEecCCHHHHHHHHHcCCCEEEE
Q 039466 206 KDIEWLRSITNLPIL--IKGVLTREDAIKAVEVGVAGIIV 243 (263)
Q Consensus 206 ~dl~~lr~~~~lPii--lKGI~s~eDA~~a~~~G~dgI~V 243 (263)
+.+++|++.++.|+. ++---..+.+..+.++|+|+|.|
T Consensus 47 ~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~v 86 (211)
T cd00429 47 PVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITF 86 (211)
T ss_pred HHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE
Confidence 788999987755653 33222235688888999999876
No 360
>PRK08185 hypothetical protein; Provisional
Probab=79.73 E-value=27 Score=31.84 Aligned_cols=60 Identities=18% Similarity=0.160 Sum_probs=36.6
Q ss_pred HHHHHHHHHHCCCceeecCCCCc----cHH------HHHHhcc-c--cccCHHHHHHHHHHHHHcCCCEEEEc
Q 039466 91 EVATARAAASCNTIMVLSFTSSC----SIE------EVAASCN-A--AYKKRDMAATLVQRAERNGFMALVLT 150 (263)
Q Consensus 91 e~a~AraA~~~gi~~~lss~s~~----sie------eV~~~~~-~--~~~d~~~~~~li~ra~~aG~~al~vT 150 (263)
=.++.+||++.+.|.+|...... +.+ ++++... . +.-|.....+.+++|-++||..+++.
T Consensus 26 ~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D 98 (283)
T PRK08185 26 LRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPVPFVIHLDHGATIEDVMRAIRCGFTSVMID 98 (283)
T ss_pred HHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEe
Confidence 34899999999999999764432 111 1112211 0 45566656666777777777776644
No 361
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=79.60 E-value=31 Score=33.04 Aligned_cols=47 Identities=19% Similarity=0.131 Sum_probs=28.5
Q ss_pred CHHHHHHHHhhcCCCEE----EEe---------cCCHHHHHHHHHcCCCEEEEcCCCCCC
Q 039466 204 SWKDIEWLRSITNLPIL----IKG---------VLTREDAIKAVEVGVAGIIVSNHGARQ 250 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPii----lKG---------I~s~eDA~~a~~~G~dgI~VSNHGGRq 250 (263)
.|.-+.+|++..++||. .-| |...-=+++..=+|+|.+.+.|+|||-
T Consensus 248 G~~~l~~l~~~~~l~IhaHra~~ga~~r~p~~Gis~~vl~kl~RLaGaD~~~~~~~~Gkf 307 (406)
T cd08207 248 GLSGLAALRRHSQLPIHGHRNGWGMLTRSPALGISFQAYQKLWRLAGVDHLHVNGLASKF 307 (406)
T ss_pred chHHHHHHHhcCCceEEECCCcceecccCCCCCCcHHHHHHHHHHcCCCccccCCCcCCc
Confidence 35556666666666665 223 222122344444799999999999984
No 362
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=79.56 E-value=26 Score=31.76 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=20.7
Q ss_pred cCCHHHHHHHHH-cCCCEEEEc--C-CC
Q 039466 224 VLTREDAIKAVE-VGVAGIIVS--N-HG 247 (263)
Q Consensus 224 I~s~eDA~~a~~-~G~dgI~VS--N-HG 247 (263)
..++|+|+.+++ .|+|.+-|| | ||
T Consensus 152 ~t~~eea~~f~~~tgvD~Lavs~Gt~hg 179 (282)
T TIGR01859 152 LADPDEAEQFVKETGVDYLAAAIGTSHG 179 (282)
T ss_pred cCCHHHHHHHHHHHCcCEEeeccCcccc
Confidence 569999999997 999999966 4 76
No 363
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=79.47 E-value=5.5 Score=35.89 Aligned_cols=52 Identities=25% Similarity=0.254 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHhhc--CCCEEEEecCCHHHHHHHHHcCCCEEEEcC--CCCCCCC
Q 039466 201 PSLSWKDIEWLRSIT--NLPILIKGVLTREDAIKAVEVGVAGIIVSN--HGARQLD 252 (263)
Q Consensus 201 ~~~~W~dl~~lr~~~--~lPiilKGI~s~eDA~~a~~~G~dgI~VSN--HGGRqlD 252 (263)
.+++-+.++++++.. ++|++.=|=.+++.+...++.|+|+|.||. |...-+|
T Consensus 209 d~~~~e~l~~~~~~~~~~ipi~AiGGI~~~ni~~~a~~Gvd~Iav~sl~~~a~~~D 264 (268)
T cd01572 209 DNMSPEELREAVALLKGRVLLEASGGITLENIRAYAETGVDYISVGALTHSAPALD 264 (268)
T ss_pred CCcCHHHHHHHHHHcCCCCcEEEECCCCHHHHHHHHHcCCCEEEEEeeecCCCccC
Confidence 356778999999877 489999997799999999999999999985 4343443
No 364
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=79.25 E-value=9.1 Score=34.41 Aligned_cols=74 Identities=23% Similarity=0.290 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHH-
Q 039466 128 KRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWK- 206 (263)
Q Consensus 128 d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~- 206 (263)
|.+..+++++...+.|++.+++.--+.-. ..++++
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~GstGE~--------------------------------------------~~Lt~~E 55 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLGSTGEF--------------------------------------------YSLTDEE 55 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESSTTTTG--------------------------------------------GGS-HHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCccc--------------------------------------------ccCCHHH
Confidence 55678888999889999998876553210 112222
Q ss_pred --H-HHHHHhhc--CCCEEEEecC--C----HHHHHHHHHcCCCEEEEcCC
Q 039466 207 --D-IEWLRSIT--NLPILIKGVL--T----REDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 207 --d-l~~lr~~~--~lPiilKGI~--s----~eDA~~a~~~G~dgI~VSNH 246 (263)
+ ++..++.+ ++|||+ ||. + .|-|+.|.++|+|||+|..-
T Consensus 56 r~~l~~~~~~~~~~~~~vi~-gv~~~st~~~i~~a~~a~~~Gad~v~v~~P 105 (289)
T PF00701_consen 56 RKELLEIVVEAAAGRVPVIA-GVGANSTEEAIELARHAQDAGADAVLVIPP 105 (289)
T ss_dssp HHHHHHHHHHHHTTSSEEEE-EEESSSHHHHHHHHHHHHHTT-SEEEEEES
T ss_pred HHHHHHHHHHHccCceEEEe-cCcchhHHHHHHHHHHHhhcCceEEEEecc
Confidence 2 33344433 478887 883 3 45566677899999998753
No 365
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=79.20 E-value=24 Score=32.59 Aligned_cols=141 Identities=16% Similarity=0.095 Sum_probs=80.2
Q ss_pred CCcccccceeecccCCcccCCChhHHHHHHHHHHCCC-ceeecCCCCc---------cHHHHHHh---ccc----cccCH
Q 039466 67 LDYKISASIIIAPTGLHKLANPEGEVATARAAASCNT-IMVLSFTSSC---------SIEEVAAS---CNA----AYKKR 129 (263)
Q Consensus 67 lG~~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi-~~~lss~s~~---------sieeV~~~---~~~----~~~d~ 129 (263)
-...+..++++|||.+-. +...-+-+.+.|. ..+.+-.-++ .+..+... .|- .-.|+
T Consensus 5 ~~~~~~~~~~lAPM~gvt------d~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gsdp 78 (323)
T COG0042 5 GLIELRNRVILAPMAGVT------DLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGGSDP 78 (323)
T ss_pred ccccccCcEEEecCCCCc------cHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEecCCCH
Confidence 345678899999998632 3334445555555 3333322211 11111111 110 33688
Q ss_pred HHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHH
Q 039466 130 DMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIE 209 (263)
Q Consensus 130 ~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~ 209 (263)
+.+.+..+.++..|++.|-+..-+|+. +=.+. +.+..+. .++.+--+-++
T Consensus 79 ~~l~eaA~~~~~~g~~~IdlN~GCP~~----~V~~~------------------------g~Ga~Ll--~~p~lv~~iv~ 128 (323)
T COG0042 79 ELLAEAAKIAEELGADIIDLNCGCPSP----KVVKG------------------------GAGAALL--KNPELLAEIVK 128 (323)
T ss_pred HHHHHHHHHHHhcCCCEEeeeCCCChH----HhcCC------------------------Ccchhhc--CCHHHHHHHHH
Confidence 888888888999999998888888751 00000 0011111 12333334578
Q ss_pred HHHhhcC-CCEEEEe---cC-----CHHHHHHHHHcCCCEEEE
Q 039466 210 WLRSITN-LPILIKG---VL-----TREDAIKAVEVGVAGIIV 243 (263)
Q Consensus 210 ~lr~~~~-lPiilKG---I~-----s~eDA~~a~~~G~dgI~V 243 (263)
.+++..+ +||=+|= +- ..+=|+.+.+.||+.|.|
T Consensus 129 a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltV 171 (323)
T COG0042 129 AMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTV 171 (323)
T ss_pred HHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEE
Confidence 8888895 9999993 32 223455556689999988
No 366
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=78.81 E-value=13 Score=34.02 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=19.7
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEc
Q 039466 127 KKRDMAATLVQRAERNGFMALVLT 150 (263)
Q Consensus 127 ~d~~~~~~li~ra~~aG~~al~vT 150 (263)
-|.+..++++++..+.|+++|++.
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gi~v~ 49 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTM 49 (309)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEC
Confidence 366778899999999999998854
No 367
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=78.64 E-value=15 Score=34.25 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHhhc---------CCCEEEEec--CCHHHHHHHHHcCCCEEEEc
Q 039466 200 DPSLSWKDIEWLRSIT---------NLPILIKGV--LTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 200 ~~~~~W~dl~~lr~~~---------~lPiilKGI--~s~eDA~~a~~~G~dgI~VS 244 (263)
.+.++|+-|+.|++.+ ++|+|+-|- .+.|+.++|++.|+.=|=|.
T Consensus 217 ~p~L~~~~L~~i~~~~~~~~gl~~~~~pLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 272 (340)
T cd00453 217 NVVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMNID 272 (340)
T ss_pred CCccCHHHHHHHHHHHHhhcccCCCCCceEEeCCCCCCHHHHHHHHHcCCeEEEcc
Confidence 4778999999999988 799999996 68899999999999877543
No 368
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=78.53 E-value=25 Score=28.73 Aligned_cols=106 Identities=21% Similarity=0.200 Sum_probs=63.4
Q ss_pred eeecccCCcccCCChhHHHHHHHHHHCCCceeecCCCCccHHHHHHhccccccCHHHHHHHHHHHHHcCCCEEEEccCCC
Q 039466 75 IIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNAAYKKRDMAATLVQRAERNGFMALVLTADTP 154 (263)
Q Consensus 75 i~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~~~~d~~~~~~li~ra~~aG~~al~vTvD~~ 154 (263)
|+++++|.. .|-.|-.-++++-+..|.-.+....-.+ .+|+ ++.|-+..+..++|..=..
T Consensus 15 vlvak~GlD--gHd~gakvia~~l~d~GfeVi~~g~~~t-p~e~-----------------v~aA~~~dv~vIgvSsl~g 74 (143)
T COG2185 15 VLVAKLGLD--GHDRGAKVIARALADAGFEVINLGLFQT-PEEA-----------------VRAAVEEDVDVIGVSSLDG 74 (143)
T ss_pred EEEeccCcc--ccccchHHHHHHHHhCCceEEecCCcCC-HHHH-----------------HHHHHhcCCCEEEEEeccc
Confidence 678899854 4778888999999999986665544432 3443 3444444555555533211
Q ss_pred CCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhc--CCCEEEEecCCHHHHHH
Q 039466 155 RLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSIT--NLPILIKGVLTREDAIK 232 (263)
Q Consensus 155 ~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~--~lPiilKGI~s~eDA~~ 232 (263)
. + ..+. -+-++.+|+.= .+.+++=|+..++|...
T Consensus 75 ~----h-------------------------------~~l~---------~~lve~lre~G~~~i~v~~GGvip~~d~~~ 110 (143)
T COG2185 75 G----H-------------------------------LTLV---------PGLVEALREAGVEDILVVVGGVIPPGDYQE 110 (143)
T ss_pred h----H-------------------------------HHHH---------HHHHHHHHHhCCcceEEeecCccCchhHHH
Confidence 0 0 0000 01123334331 23467777999999888
Q ss_pred HHHcCCCEEEEc
Q 039466 233 AVEVGVAGIIVS 244 (263)
Q Consensus 233 a~~~G~dgI~VS 244 (263)
..++|+++|+--
T Consensus 111 l~~~G~~~if~p 122 (143)
T COG2185 111 LKEMGVDRIFGP 122 (143)
T ss_pred HHHhCcceeeCC
Confidence 888999988743
No 369
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=78.38 E-value=5.4 Score=35.87 Aligned_cols=51 Identities=24% Similarity=0.245 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHhhc----CCCEEEEecCCHHHHHHHHHcCCCEEEEcC--CCCCCCC
Q 039466 202 SLSWKDIEWLRSIT----NLPILIKGVLTREDAIKAVEVGVAGIIVSN--HGARQLD 252 (263)
Q Consensus 202 ~~~W~dl~~lr~~~----~lPiilKGI~s~eDA~~a~~~G~dgI~VSN--HGGRqlD 252 (263)
+++-++++++.+.. ++|+.+=|=.+++.+....+.|+|+|.||. |..+-+|
T Consensus 209 ~~~~e~l~~~v~~i~~~~~i~i~asGGIt~~ni~~~a~~Gad~Isvgal~~s~~~~D 265 (269)
T cd01568 209 NMSPEELKEAVKLLKGLPRVLLEASGGITLENIRAYAETGVDVISTGALTHSAPALD 265 (269)
T ss_pred CCCHHHHHHHHHHhccCCCeEEEEECCCCHHHHHHHHHcCCCEEEEcHHHcCCCccC
Confidence 35567777776655 789999998999999999999999999864 4444444
No 370
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=78.28 E-value=28 Score=33.74 Aligned_cols=47 Identities=9% Similarity=0.070 Sum_probs=30.4
Q ss_pred ccCCcccccceeecccCCcccCCChhHHHHHHHHHHCCCceeecCCCCccHHHHH
Q 039466 65 STLDYKISASIIIAPTGLHKLANPEGEVATARAAASCNTIMVLSFTSSCSIEEVA 119 (263)
Q Consensus 65 ~~lG~~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~lss~s~~sieeV~ 119 (263)
++||. ..|++-+||+. +. ....++.+..++|..-.+++.. .++++|.
T Consensus 13 ~~lgi--ryPiiqgpMa~-Gi----Ss~eLVaAVs~AGgLG~lgag~-l~~e~l~ 59 (444)
T TIGR02814 13 EDYGV--RYAYVAGAMAN-GI----ASAELVIAMGRAGILGFFGAGG-LPLEEVE 59 (444)
T ss_pred HHhCC--CCcEECccccC-CC----CCHHHHHHHHhCCceeeeCCCC-CCHHHHH
Confidence 45554 57999999973 12 2346778888888766666543 4566553
No 371
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=78.23 E-value=44 Score=30.34 Aligned_cols=63 Identities=13% Similarity=0.206 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHCCCceeecCCCCc----cHHHHH-------Hhcc-c--cccCHHHHHHHHHHHHHcCCCEEEEccC
Q 039466 90 GEVATARAAASCNTIMVLSFTSSC----SIEEVA-------ASCN-A--AYKKRDMAATLVQRAERNGFMALVLTAD 152 (263)
Q Consensus 90 ge~a~AraA~~~gi~~~lss~s~~----sieeV~-------~~~~-~--~~~d~~~~~~li~ra~~aG~~al~vTvD 152 (263)
--.++-+||++.+.|.+|....+. +++.+. +... . +.-|.....+.+++|-++||..+.+.-.
T Consensus 30 ~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s 106 (281)
T PRK06806 30 MVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGS 106 (281)
T ss_pred HHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCC
Confidence 334899999999999999765432 333321 2111 1 5567766677788888888877775543
No 372
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=78.05 E-value=5.5 Score=35.37 Aligned_cols=45 Identities=22% Similarity=0.409 Sum_probs=40.1
Q ss_pred CCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcCCC
Q 039466 203 LSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSNHG 247 (263)
Q Consensus 203 ~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSNHG 247 (263)
-+-+.|+.|.+.+++||=+=| |-|.++++.++++|++-++++.-.
T Consensus 62 ~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~a 107 (241)
T COG0106 62 RNLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAA 107 (241)
T ss_pred ccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecce
Confidence 355789999999999999988 999999999999999999987643
No 373
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=78.01 E-value=4.1 Score=35.10 Aligned_cols=39 Identities=26% Similarity=0.349 Sum_probs=33.5
Q ss_pred HHHHHHHhhcCCCEE-EEecCCHHHHHHHHHcCCCEEEEc
Q 039466 206 KDIEWLRSITNLPIL-IKGVLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 206 ~dl~~lr~~~~lPii-lKGI~s~eDA~~a~~~G~dgI~VS 244 (263)
..++|||++..-+.| +-|=.+++.+.++.++|++.||..
T Consensus 158 ~KV~~lR~kyp~l~ievDGGv~~~ti~~~a~AGAN~iVaG 197 (224)
T KOG3111|consen 158 PKVEWLREKYPNLDIEVDGGVGPSTIDKAAEAGANMIVAG 197 (224)
T ss_pred HHHHHHHHhCCCceEEecCCcCcchHHHHHHcCCCEEEec
Confidence 479999988776666 999899999999999999998753
No 374
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=78.00 E-value=16 Score=31.94 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=18.9
Q ss_pred HHHHHHHcCCCEEEEcCCCCCCCCCchhhhc
Q 039466 229 DAIKAVEVGVAGIIVSNHGARQLDYTPATIS 259 (263)
Q Consensus 229 DA~~a~~~G~dgI~VSNHGGRqlD~~~~~i~ 259 (263)
....|++.|+|+|+| ||.+=.++-|..
T Consensus 192 ~~~~ai~~Gad~iVv----GR~I~~a~dP~~ 218 (230)
T PRK00230 192 TPAQAIAAGSDYIVV----GRPITQAADPAA 218 (230)
T ss_pred CHHHHHHcCCCEEEE----CCcccCCCCHHH
Confidence 355566899999998 677666665544
No 375
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=77.76 E-value=54 Score=29.63 Aligned_cols=94 Identities=11% Similarity=0.038 Sum_probs=55.8
Q ss_pred cceeecccCCcccCCChhHHHHHHHHHHCCCce--eecCCC---CccHHH-------HHHhccc-------cccCHHHHH
Q 039466 73 ASIIIAPTGLHKLANPEGEVATARAAASCNTIM--VLSFTS---SCSIEE-------VAASCNA-------AYKKRDMAA 133 (263)
Q Consensus 73 ~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~--~lss~s---~~siee-------V~~~~~~-------~~~d~~~~~ 133 (263)
.|.++.|+.-.+-.+.++-..+.+-..+.|+-- +.||.+ +.|.|| +.+...+ +-.+-+.+.
T Consensus 10 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai 89 (296)
T TIGR03249 10 LSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAI 89 (296)
T ss_pred EEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHH
Confidence 466677776555455666667888887777543 345544 345555 2223222 223455677
Q ss_pred HHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhh
Q 039466 134 TLVQRAERNGFMALVLTADTPRLDRREADIKNKM 167 (263)
Q Consensus 134 ~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~ 167 (263)
++.+.|+++|++++++..-. .....+..+...|
T Consensus 90 ~~a~~a~~~Gadav~~~pP~-y~~~s~~~i~~~f 122 (296)
T TIGR03249 90 EIARLAEKAGADGYLLLPPY-LINGEQEGLYAHV 122 (296)
T ss_pred HHHHHHHHhCCCEEEECCCC-CCCCCHHHHHHHH
Confidence 88889999999999985532 2223344454444
No 376
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=77.72 E-value=5 Score=37.13 Aligned_cols=46 Identities=28% Similarity=0.327 Sum_probs=38.1
Q ss_pred CCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcC-CCEEE--EcCCCC
Q 039466 203 LSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVG-VAGII--VSNHGA 248 (263)
Q Consensus 203 ~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G-~dgI~--VSNHGG 248 (263)
.+|+.+++|++.+++||++=+ +.+++|++++++.| +|.|. ++..||
T Consensus 227 ~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GG 276 (357)
T cd03316 227 DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGG 276 (357)
T ss_pred cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCC
Confidence 368899999999999999977 78999999999865 66553 467776
No 377
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=77.63 E-value=4.7 Score=36.32 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=36.3
Q ss_pred CHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcCC
Q 039466 204 SWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSNH 246 (263)
+.+-|+.|++ +++||-+=| |-+ |+++++++.||+-|+|+.-
T Consensus 72 n~~~i~~i~~-~~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~ 113 (262)
T PLN02446 72 LAAALEALRA-YPGGLQVGGGVNS-ENAMSYLDAGASHVIVTSY 113 (262)
T ss_pred cHHHHHHHHh-CCCCEEEeCCccH-HHHHHHHHcCCCEEEEchH
Confidence 4678899999 999999988 875 9999999999999999753
No 378
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=77.52 E-value=16 Score=32.65 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=29.3
Q ss_pred HHHHHHHhhcCCCEEEE-ecCCHHHHHHHHHcCCCEEEEc
Q 039466 206 KDIEWLRSITNLPILIK-GVLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 206 ~dl~~lr~~~~lPiilK-GI~s~eDA~~a~~~G~dgI~VS 244 (263)
++|..+.+.+++++.+. |.++.|.++++.++|++.+.++
T Consensus 101 ~~i~~~~~~~~i~~~~~~g~~~~e~l~~Lk~aG~~~v~i~ 140 (296)
T TIGR00433 101 EAMVQIVEEMGLKTCATLGLLDPEQAKRLKDAGLDYYNHN 140 (296)
T ss_pred HHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCCEEEEc
Confidence 34555555677776555 6789999999999999998775
No 379
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=77.49 E-value=18 Score=32.45 Aligned_cols=26 Identities=4% Similarity=0.051 Sum_probs=20.5
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEccC
Q 039466 127 KKRDMAATLVQRAERNGFMALVLTAD 152 (263)
Q Consensus 127 ~d~~~~~~li~ra~~aG~~al~vTvD 152 (263)
-|.+...+++++..+.|+++|++.=-
T Consensus 17 iD~~~~~~li~~l~~~Gv~Gl~~~Gs 42 (279)
T cd00953 17 IDKEKFKKHCENLISKGIDYVFVAGT 42 (279)
T ss_pred cCHHHHHHHHHHHHHcCCcEEEEccc
Confidence 36677889999999999999886433
No 380
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=77.39 E-value=21 Score=31.47 Aligned_cols=41 Identities=15% Similarity=0.041 Sum_probs=31.2
Q ss_pred CHHHHHHHHhhc-----CCCEEEEecCCHHHHHHHHHcCCCEEEEc
Q 039466 204 SWKDIEWLRSIT-----NLPILIKGVLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 204 ~W~dl~~lr~~~-----~lPiilKGI~s~eDA~~a~~~G~dgI~VS 244 (263)
..+.|+++|+.. +.-|-+=|=.+.+.+.+++++|||.+|++
T Consensus 162 ~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD~~V~G 207 (228)
T PRK08091 162 ILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQIDWVVSG 207 (228)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEC
Confidence 456677766543 34488888789999999999999977654
No 381
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=77.39 E-value=11 Score=33.92 Aligned_cols=45 Identities=22% Similarity=0.412 Sum_probs=26.0
Q ss_pred CCCHH-HHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcCCC
Q 039466 202 SLSWK-DIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSNHG 247 (263)
Q Consensus 202 ~~~W~-dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSNHG 247 (263)
.++++ .++-||..-..=+.==+ |.++|+|+..+++|+|-| |.+-|
T Consensus 133 Gmgy~~EVemi~~A~~~gl~T~~yvf~~e~A~~M~~AGaDii-v~H~G 179 (268)
T PF09370_consen 133 GMGYDREVEMIRKAHEKGLFTTAYVFNEEQARAMAEAGADII-VAHMG 179 (268)
T ss_dssp T--HHHHHHHHHHHHHTT-EE--EE-SHHHHHHHHHHT-SEE-EEE-S
T ss_pred CCCHHHHHHHHHHHHHCCCeeeeeecCHHHHHHHHHcCCCEE-EecCC
Confidence 34554 47777765544444444 679999999999999955 44443
No 382
>PRK14017 galactonate dehydratase; Provisional
Probab=77.38 E-value=13 Score=34.95 Aligned_cols=47 Identities=23% Similarity=0.302 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcC-CCEEE--EcCCCC
Q 039466 202 SLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVG-VAGII--VSNHGA 248 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G-~dgI~--VSNHGG 248 (263)
.-+|+.+++|++++++||.+=+ +.+.+|++.+++.| +|.|. ++..||
T Consensus 214 ~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GG 264 (382)
T PRK14017 214 PENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGG 264 (382)
T ss_pred cCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCC
Confidence 3468899999999999999877 68999999999986 55543 567777
No 383
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=77.16 E-value=13 Score=34.49 Aligned_cols=47 Identities=23% Similarity=0.329 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEE---EcCCCC
Q 039466 202 SLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGII---VSNHGA 248 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~---VSNHGG 248 (263)
.-+|+.+++|++.+++||.+=+ +.+++|...+++.|+--|+ ++-.||
T Consensus 213 ~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GG 263 (352)
T cd03325 213 PENVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGG 263 (352)
T ss_pred ccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCC
Confidence 3478899999999999999977 6799999999987643344 566676
No 384
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=77.06 E-value=11 Score=35.00 Aligned_cols=47 Identities=19% Similarity=0.165 Sum_probs=32.0
Q ss_pred CHHHHHHHHhhcCCCEEEE----------ecCCHHHHHH----HHHcCCCEEEEcC--CCCCC
Q 039466 204 SWKDIEWLRSITNLPILIK----------GVLTREDAIK----AVEVGVAGIIVSN--HGARQ 250 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilK----------GI~s~eDA~~----a~~~G~dgI~VSN--HGGRq 250 (263)
.-+-++.+|+..+-++.|+ |-.+.+|+.. +.++|+|.|-||. |..+.
T Consensus 190 ~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~ 252 (353)
T cd02930 190 PVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARV 252 (353)
T ss_pred HHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCC
Confidence 3466899999887666554 2257777643 3358999999984 65543
No 385
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=76.92 E-value=5.3 Score=34.41 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=31.0
Q ss_pred CHHHHHHHHhh-----cCCCEEEEecCCHHHHHHHHHcCCCEEEEc
Q 039466 204 SWKDIEWLRSI-----TNLPILIKGVLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 204 ~W~dl~~lr~~-----~~lPiilKGI~s~eDA~~a~~~G~dgI~VS 244 (263)
..+.|+++++. .+..|.+=|=.+.+.+.++.++|||.+|++
T Consensus 149 ~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~~~~~~~~aGad~~V~G 194 (201)
T PF00834_consen 149 VLEKIRELRKLIPENGLDFEIEVDGGINEENIKQLVEAGADIFVAG 194 (201)
T ss_dssp HHHHHHHHHHHHHHHTCGSEEEEESSESTTTHHHHHHHT--EEEES
T ss_pred HHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 45667777664 347899999889999999999999987764
No 386
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=76.87 E-value=5.1 Score=34.05 Aligned_cols=36 Identities=22% Similarity=0.109 Sum_probs=31.6
Q ss_pred HHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEE
Q 039466 206 KDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGI 241 (263)
Q Consensus 206 ~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI 241 (263)
+.+..+.+..++++|+.||-+.++...+.+.|++++
T Consensus 193 ~~l~~~~~~~~~~via~gVe~~~~~~~l~~~Gi~~~ 228 (241)
T smart00052 193 QSIIELAQKLGLQVVAEGVETPEQLDLLRSLGCDYG 228 (241)
T ss_pred HHHHHHHHHCCCeEEEecCCCHHHHHHHHHcCCCEE
Confidence 445667777899999999999999999999999976
No 387
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=76.66 E-value=6.1 Score=35.45 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=36.1
Q ss_pred CHHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEEcCC
Q 039466 204 SWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~VSNH 246 (263)
+-+.++++++..++.|.+=.|-++++++++++.|||||+ +|+
T Consensus 218 t~~~V~~~h~~~gl~V~~WTVN~~~~~~~l~~~GVDgIi-TD~ 259 (263)
T cd08580 218 TPAAVDCFRRNSKVKIVLFGINTADDYRLAKCLGADAVM-VDS 259 (263)
T ss_pred CHHHHHHHHhcCCcEEEEEEeCCHHHHHHHHHcCCCEEE-eCC
Confidence 445688887777999999999999999999999999996 443
No 388
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=76.56 E-value=11 Score=33.31 Aligned_cols=46 Identities=11% Similarity=0.054 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHhhcCCCEEEEecCCH--HHHHHHHHcCCCEEEEcCCC
Q 039466 202 SLSWKDIEWLRSITNLPILIKGVLTR--EDAIKAVEVGVAGIIVSNHG 247 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~lPiilKGI~s~--eDA~~a~~~G~dgI~VSNHG 247 (263)
..++++++.+.+..++|+++.-.-.. -+...+.++|++-|.+.++.
T Consensus 182 ~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~~lG~~~v~~~~~~ 229 (243)
T cd00377 182 LKDPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELAELGVRRVSYGLAL 229 (243)
T ss_pred CCCHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHCCCeEEEEChHH
Confidence 34889999999999999999866444 46777789999999888763
No 389
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=76.54 E-value=26 Score=30.63 Aligned_cols=38 Identities=29% Similarity=0.386 Sum_probs=28.8
Q ss_pred HHHHHHHHhhcCCCEE--EEec---------CCHHHHHHHHHcCCCEEE
Q 039466 205 WKDIEWLRSITNLPIL--IKGV---------LTREDAIKAVEVGVAGII 242 (263)
Q Consensus 205 W~dl~~lr~~~~lPii--lKGI---------~s~eDA~~a~~~G~dgI~ 242 (263)
-+||+.+++..++||| +|-- -+-+|...+.+.|++-|-
T Consensus 55 v~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA 103 (229)
T COG3010 55 VEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIA 103 (229)
T ss_pred hhhHHHHHhhCCCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEE
Confidence 3688889999999987 2321 266889999999998664
No 390
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=76.28 E-value=18 Score=32.67 Aligned_cols=75 Identities=19% Similarity=0.133 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHH-cCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHH
Q 039466 128 KRDMAATLVQRAER-NGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWK 206 (263)
Q Consensus 128 d~~~~~~li~ra~~-aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 206 (263)
|.+.+++++++..+ .|++.|++.--+--. ..++.+
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v~GstGE~--------------------------------------------~~Ls~e 57 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYVGGSTGEA--------------------------------------------FLLSTE 57 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECCCcccc--------------------------------------------ccCCHH
Confidence 56778899999988 999998865543210 122222
Q ss_pred H----HHHHHhhcC--CCEEEEecC--CHHH----HHHHHHcCCCEEEEcCCC
Q 039466 207 D----IEWLRSITN--LPILIKGVL--TRED----AIKAVEVGVAGIIVSNHG 247 (263)
Q Consensus 207 d----l~~lr~~~~--lPiilKGI~--s~eD----A~~a~~~G~dgI~VSNHG 247 (263)
. ++..++..+ +|||+ ||. +.+| |+.|.+.|+|||+|..--
T Consensus 58 Er~~~~~~~~~~~~~~~~via-gvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~ 109 (293)
T PRK04147 58 EKKQVLEIVAEEAKGKVKLIA-QVGSVNTAEAQELAKYATELGYDAISAVTPF 109 (293)
T ss_pred HHHHHHHHHHHHhCCCCCEEe-cCCCCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 2 344444444 67665 883 4444 466678999999998754
No 391
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=76.15 E-value=59 Score=29.28 Aligned_cols=80 Identities=16% Similarity=0.045 Sum_probs=51.1
Q ss_pred cceeecccCCcccCCChhHHHHHHHHHHCCCce--eecCCC---CccHHH-------HHHhccc-------cccCHHHHH
Q 039466 73 ASIIIAPTGLHKLANPEGEVATARAAASCNTIM--VLSFTS---SCSIEE-------VAASCNA-------AYKKRDMAA 133 (263)
Q Consensus 73 ~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~--~lss~s---~~siee-------V~~~~~~-------~~~d~~~~~ 133 (263)
.|.++.|+.-.+-.+.++-..+.+-..+.|+-- +.||.+ ..|.|| +.+...+ +-.+-..+.
T Consensus 5 ~~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i 84 (289)
T cd00951 5 LSFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAI 84 (289)
T ss_pred EEEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHH
Confidence 456677776555455566667888888877643 455543 345554 2233222 223666778
Q ss_pred HHHHHHHHcCCCEEEEccC
Q 039466 134 TLVQRAERNGFMALVLTAD 152 (263)
Q Consensus 134 ~li~ra~~aG~~al~vTvD 152 (263)
++.++|+++|++++++..-
T Consensus 85 ~~a~~a~~~Gad~v~~~pP 103 (289)
T cd00951 85 AYAQAAEKAGADGILLLPP 103 (289)
T ss_pred HHHHHHHHhCCCEEEECCC
Confidence 8899999999999998543
No 392
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=76.06 E-value=11 Score=34.37 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHcCCCEEEEc
Q 039466 225 LTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 225 ~s~eDA~~a~~~G~dgI~VS 244 (263)
-++|+|+++++.|+|.+=||
T Consensus 154 t~peea~~f~~tgvD~LAv~ 173 (293)
T PRK07315 154 APIEDAKAMVETGIDFLAAG 173 (293)
T ss_pred CCHHHHHHHHHcCCCEEeec
Confidence 79999999999999999999
No 393
>TIGR03586 PseI pseudaminic acid synthase.
Probab=76.01 E-value=49 Score=30.75 Aligned_cols=92 Identities=20% Similarity=0.256 Sum_probs=62.1
Q ss_pred HHHHHHHHHCCCceeecCCCCccHHHHHHhccccccCHHHHHHHHHHHHHcCCCEEEE-ccCCCCCcchHHHHhhhhhhh
Q 039466 92 VATARAAASCNTIMVLSFTSSCSIEEVAASCNAAYKKRDMAATLVQRAERNGFMALVL-TADTPRLDRREADIKNKMIAQ 170 (263)
Q Consensus 92 ~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~~~~d~~~~~~li~ra~~aG~~al~v-TvD~~~~g~R~~d~r~~~~~p 170 (263)
..+-+.+++.|.|.+||+.. .+++||..+ ++...+.|..-+++ +.-+ .| |
T Consensus 124 ~~LL~~va~~gkPvilstG~-~t~~Ei~~A--------------v~~i~~~g~~~i~LlhC~s------------~Y--P 174 (327)
T TIGR03586 124 LPLIRYVAKTGKPIIMSTGI-ATLEEIQEA--------------VEACREAGCKDLVLLKCTS------------SY--P 174 (327)
T ss_pred HHHHHHHHhcCCcEEEECCC-CCHHHHHHH--------------HHHHHHCCCCcEEEEecCC------------CC--C
Confidence 47899999999999999998 488888654 33344677744333 3211 11 1
Q ss_pred hhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCC
Q 039466 171 QLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVA 239 (263)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~d 239 (263)
.....++-..|..|++.+++||-+-. .....-+..|+.+||+
T Consensus 175 ---------------------------~~~~~~nL~~i~~lk~~f~~pVG~SDHt~G~~~~~aAva~GA~ 217 (327)
T TIGR03586 175 ---------------------------APLEDANLRTIPDLAERFNVPVGLSDHTLGILAPVAAVALGAC 217 (327)
T ss_pred ---------------------------CCcccCCHHHHHHHHHHhCCCEEeeCCCCchHHHHHHHHcCCC
Confidence 01123456778899999999996655 3445667888889998
No 394
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=75.82 E-value=23 Score=31.46 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=34.7
Q ss_pred cccccccccccccc-cCCcccccceeecccCCcccCCChhHHHHHHHHHHCC-CceeecCCCCcc
Q 039466 52 RILVDVCRIDISTS-TLDYKISASIIIAPTGLHKLANPEGEVATARAAASCN-TIMVLSFTSSCS 114 (263)
Q Consensus 52 r~L~~v~~~d~st~-~lG~~~~~Pi~iaP~~~~~l~~~~ge~a~AraA~~~g-i~~~lss~s~~s 114 (263)
.++-|..--|+-.| -+-.+-..+..+--++.|...-.+...++.+++.+.| -.+++.++++.+
T Consensus 64 ~VflDlK~~DIpnT~~~~~~~~~~~g~d~vtvH~~~G~~~~~~~~e~~~~~~~~vl~vT~lts~~ 128 (240)
T COG0284 64 KVFLDLKLADIPNTVALAAKAAADLGADAVTVHAFGGFDMLRAAKEALEAGGPFVLAVTSLTSMG 128 (240)
T ss_pred ceEEeeecccchHHHHHHHHHhhhcCCcEEEEeCcCCHHHHHHHHHHHhhcCceEEEEEeCCCch
Confidence 56666655554333 2333334555555555555444565667888888877 445555554443
No 395
>PRK08227 autoinducer 2 aldolase; Validated
Probab=75.80 E-value=13 Score=33.53 Aligned_cols=69 Identities=14% Similarity=0.064 Sum_probs=43.3
Q ss_pred HHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHh
Q 039466 134 TLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRS 213 (263)
Q Consensus 134 ~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~ 213 (263)
.-++.|-+.|++|+.+|+..- +..|.++ + .++..+..-.+
T Consensus 98 ~sVeeAvrlGAdAV~~~v~~G--s~~E~~~-----------l---------------------------~~l~~v~~ea~ 137 (264)
T PRK08227 98 VDMEDAVRLNACAVAAQVFIG--SEYEHQS-----------I---------------------------KNIIQLVDAGL 137 (264)
T ss_pred ecHHHHHHCCCCEEEEEEecC--CHHHHHH-----------H---------------------------HHHHHHHHHHH
Confidence 337888899999999999853 1111100 0 01234555567
Q ss_pred hcCCCEEE---Ee--cCCHHH-----HHHHHHcCCCEEE
Q 039466 214 ITNLPILI---KG--VLTRED-----AIKAVEVGVAGII 242 (263)
Q Consensus 214 ~~~lPiil---KG--I~s~eD-----A~~a~~~G~dgI~ 242 (263)
.|++|+++ +| +-+..| |+.|+|+|+|-|=
T Consensus 138 ~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK 176 (264)
T PRK08227 138 RYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIK 176 (264)
T ss_pred HhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEe
Confidence 89999887 22 233334 7888999999653
No 396
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=75.75 E-value=25 Score=33.78 Aligned_cols=20 Identities=15% Similarity=0.062 Sum_probs=14.3
Q ss_pred HHHHHHcCCCEEEEcCC-CCC
Q 039466 230 AIKAVEVGVAGIIVSNH-GAR 249 (263)
Q Consensus 230 A~~a~~~G~dgI~VSNH-GGR 249 (263)
+++..=+|+|.+.+.|+ +||
T Consensus 291 ~kl~RLaGaD~~~~~t~~~Gk 311 (412)
T TIGR03326 291 AKLYRLIGVDQLHTGTAGVGK 311 (412)
T ss_pred HHHHHHcCCCeeeeCCCccCC
Confidence 34444479999999999 664
No 397
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=75.72 E-value=28 Score=30.36 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=32.4
Q ss_pred HHHHHHhhcC-CCEEEEec----CCHHHHHHHHHcCCCEEEEcCCC
Q 039466 207 DIEWLRSITN-LPILIKGV----LTREDAIKAVEVGVAGIIVSNHG 247 (263)
Q Consensus 207 dl~~lr~~~~-lPiilKGI----~s~eDA~~a~~~G~dgI~VSNHG 247 (263)
-++++++.++ +||-+=+= +...-+..|+++||+.|..|=.|
T Consensus 180 li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G 225 (265)
T cd03174 180 LVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNG 225 (265)
T ss_pred HHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEecccc
Confidence 4788898888 77766652 67888999999999999877554
No 398
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=75.68 E-value=60 Score=30.14 Aligned_cols=29 Identities=14% Similarity=0.407 Sum_probs=26.1
Q ss_pred CCCEEEEe-cCCHHHHHHHHHcCC--------CEEEEc
Q 039466 216 NLPILIKG-VLTREDAIKAVEVGV--------AGIIVS 244 (263)
Q Consensus 216 ~lPiilKG-I~s~eDA~~a~~~G~--------dgI~VS 244 (263)
++|||.=| |.+...+..++..|+ +||++.
T Consensus 165 ~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mG 202 (320)
T cd04743 165 KIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMG 202 (320)
T ss_pred CccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEc
Confidence 79999999 999999999999988 799874
No 399
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=75.57 E-value=28 Score=30.87 Aligned_cols=44 Identities=30% Similarity=0.360 Sum_probs=31.0
Q ss_pred HHHHHHHhhcCC-CEEEEec----CCHHHHHHHHHcCCCEEEEcCC--CCC
Q 039466 206 KDIEWLRSITNL-PILIKGV----LTREDAIKAVEVGVAGIIVSNH--GAR 249 (263)
Q Consensus 206 ~dl~~lr~~~~l-PiilKGI----~s~eDA~~a~~~G~dgI~VSNH--GGR 249 (263)
+-++.+++.++. ||-+=.= +...-+..|+++||+.|..|=. |+|
T Consensus 174 ~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd~s~~GlG~~ 224 (263)
T cd07943 174 ERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATRIDGSLAGLGAG 224 (263)
T ss_pred HHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCCCEEEeecccccCC
Confidence 346778888875 6644331 5677788999999999987644 454
No 400
>PRK06801 hypothetical protein; Provisional
Probab=75.56 E-value=36 Score=30.97 Aligned_cols=61 Identities=21% Similarity=0.186 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHCCCceeecCCCCc----cHHHH-------HHhccc---cccCHHHHHHHHHHHHHcCCCEEEEc
Q 039466 90 GEVATARAAASCNTIMVLSFTSSC----SIEEV-------AASCNA---AYKKRDMAATLVQRAERNGFMALVLT 150 (263)
Q Consensus 90 ge~a~AraA~~~gi~~~lss~s~~----sieeV-------~~~~~~---~~~d~~~~~~li~ra~~aG~~al~vT 150 (263)
-=.++.+||++.+.|.+|....+. +++.+ ++...- +.-|.....+.+++|-++||..+++.
T Consensus 30 ~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D 104 (286)
T PRK06801 30 FLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLGFSSVMFD 104 (286)
T ss_pred HHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCcEEEEc
Confidence 334788899999999888664432 33332 222211 56677777788899999999998873
No 401
>PRK15452 putative protease; Provisional
Probab=75.52 E-value=8.9 Score=37.13 Aligned_cols=74 Identities=9% Similarity=0.022 Sum_probs=45.8
Q ss_pred HHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHh
Q 039466 134 TLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRS 213 (263)
Q Consensus 134 ~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~ 213 (263)
+.++.|-++|++++.+..+. .+.|. ....+++++|++..+
T Consensus 14 e~l~aAi~~GADaVY~G~~~--~~~R~--------------------------------------~~~~f~~edl~eav~ 53 (443)
T PRK15452 14 KNMRYAFAYGADAVYAGQPR--YSLRV--------------------------------------RNNEFNHENLALGIN 53 (443)
T ss_pred HHHHHHHHCCCCEEEECCCc--cchhh--------------------------------------hccCCCHHHHHHHHH
Confidence 34666778999999987773 22221 113466777666554
Q ss_pred h---cCCCEEEE--ecCCHHH-------HHHHHHcCCCEEEEcCCC
Q 039466 214 I---TNLPILIK--GVLTRED-------AIKAVEVGVAGIIVSNHG 247 (263)
Q Consensus 214 ~---~~lPiilK--GI~s~eD-------A~~a~~~G~dgI~VSNHG 247 (263)
. -+..|.+. -+...++ ...+.++|+|||+|+|-|
T Consensus 54 ~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgvIV~d~G 99 (443)
T PRK15452 54 EAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDALIMSDPG 99 (443)
T ss_pred HHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEEEEcCHH
Confidence 3 33444443 2344444 355668999999999977
No 402
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=75.38 E-value=5.7 Score=37.29 Aligned_cols=40 Identities=20% Similarity=0.359 Sum_probs=33.0
Q ss_pred HHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 206 KDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 206 ~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
-+....++..++|||.=| |.+.-|..+|+-+|+|+|++.+
T Consensus 201 ~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~ 241 (352)
T PF00478_consen 201 YECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGS 241 (352)
T ss_dssp HHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEEST
T ss_pred HHHHHHhhhccCceeecCCcCcccceeeeeeecccceeech
Confidence 355667777799999999 9999999999999999999854
No 403
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=75.31 E-value=65 Score=29.29 Aligned_cols=158 Identities=15% Similarity=0.050 Sum_probs=83.9
Q ss_pred cceeecccCCcccCCChhHHHHHHHHHHCCCce--eecCCC---CccHHH-------HHHhccc-------cccCHHHHH
Q 039466 73 ASIIIAPTGLHKLANPEGEVATARAAASCNTIM--VLSFTS---SCSIEE-------VAASCNA-------AYKKRDMAA 133 (263)
Q Consensus 73 ~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~--~lss~s---~~siee-------V~~~~~~-------~~~d~~~~~ 133 (263)
.|.++.|+.-.+-.+.++-..+.+-..+.|+-- +.||.+ ..|.|| +.+...+ +-.+-..+.
T Consensus 12 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i 91 (303)
T PRK03620 12 LSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAI 91 (303)
T ss_pred EEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHH
Confidence 567778876555455566667888777777643 345443 345554 2333332 223556678
Q ss_pred HHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHh
Q 039466 134 TLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRS 213 (263)
Q Consensus 134 ~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~ 213 (263)
++++.|+++|++++++.--.-. .-.+..+...|.-- .... .+. . -+ | ....-.++++.+..|.+
T Consensus 92 ~~~~~a~~~Gadav~~~pP~y~-~~~~~~i~~~f~~v--a~~~-----~lp-i---~l--Y--n~~g~~l~~~~l~~L~~ 155 (303)
T PRK03620 92 EYAQAAERAGADGILLLPPYLT-EAPQEGLAAHVEAV--CKST-----DLG-V---IV--Y--NRDNAVLTADTLARLAE 155 (303)
T ss_pred HHHHHHHHhCCCEEEECCCCCC-CCCHHHHHHHHHHH--HHhC-----CCC-E---EE--E--cCCCCCCCHHHHHHHHh
Confidence 8899999999999998554211 12244454444310 0000 000 0 00 0 00113578899999975
Q ss_pred hcCCCEEEEe-cCCHHHHHHHHH-cCCCEEEEcCC
Q 039466 214 ITNLPILIKG-VLTREDAIKAVE-VGVAGIIVSNH 246 (263)
Q Consensus 214 ~~~lPiilKG-I~s~eDA~~a~~-~G~dgI~VSNH 246 (263)
..+-=+-+|- ..+.......++ .+-+-.|++++
T Consensus 156 ~~pni~giK~s~~d~~~~~~~~~~~~~~f~vl~G~ 190 (303)
T PRK03620 156 RCPNLVGFKDGVGDIELMQRIVRALGDRLLYLGGL 190 (303)
T ss_pred hCCCEEEEEeCCCCHHHHHHHHHHcCCCeEEEeCC
Confidence 5332234454 234454444443 35565666665
No 404
>PLN02334 ribulose-phosphate 3-epimerase
Probab=75.30 E-value=37 Score=29.47 Aligned_cols=44 Identities=20% Similarity=0.149 Sum_probs=31.1
Q ss_pred CCHHHHHHHHhhcCCCEEEEe-cCCHHH-HHHHHHcCCCEEEEcCCCC
Q 039466 203 LSWKDIEWLRSITNLPILIKG-VLTRED-AIKAVEVGVAGIIVSNHGA 248 (263)
Q Consensus 203 ~~W~dl~~lr~~~~lPiilKG-I~s~eD-A~~a~~~G~dgI~VSNHGG 248 (263)
+.++.+++||+.++.|+-+-= |.+++| ...+.++|+|+|.| |.|
T Consensus 52 ~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~v--H~~ 97 (229)
T PLN02334 52 IGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTF--HIE 97 (229)
T ss_pred cCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEE--eec
Confidence 456889999999887765543 234554 66778899998754 666
No 405
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=75.23 E-value=13 Score=33.50 Aligned_cols=20 Identities=5% Similarity=0.270 Sum_probs=11.6
Q ss_pred CCHHHHHHHHHcCCCEEEEc
Q 039466 225 LTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 225 ~s~eDA~~a~~~G~dgI~VS 244 (263)
.++..+++++|.|++||+|-
T Consensus 78 ~~~~~i~r~LD~GA~GIivP 97 (267)
T PRK10128 78 GSKPLIKQVLDIGAQTLLIP 97 (267)
T ss_pred CCHHHHHHHhCCCCCeeEec
Confidence 45555556666666666554
No 406
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=75.06 E-value=29 Score=31.85 Aligned_cols=45 Identities=24% Similarity=0.271 Sum_probs=36.2
Q ss_pred CHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcC-CCEEE--EcCCCC
Q 039466 204 SWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVG-VAGII--VSNHGA 248 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G-~dgI~--VSNHGG 248 (263)
+|+.+++|++.+++||..=+ +.+..|.+.+++.| +|.|. ++.-||
T Consensus 211 ~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GG 259 (324)
T TIGR01928 211 DLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGG 259 (324)
T ss_pred HHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcC
Confidence 67789999999999999966 78999999999976 56443 455565
No 407
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=74.89 E-value=13 Score=34.72 Aligned_cols=69 Identities=20% Similarity=0.184 Sum_probs=55.4
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHH
Q 039466 127 KKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWK 206 (263)
Q Consensus 127 ~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 206 (263)
.|-+.+.+.+++.+++||+-+=|+|.... .-+
T Consensus 31 ~Dv~atv~QI~~L~~aGceiVRvavp~~~------------------------------------------------~A~ 62 (346)
T TIGR00612 31 IDIDSTVAQIRALEEAGCDIVRVTVPDRE------------------------------------------------SAA 62 (346)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEcCCCHH------------------------------------------------HHH
Confidence 46677888899999999998888876310 114
Q ss_pred HHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEE
Q 039466 207 DIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIV 243 (263)
Q Consensus 207 dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~V 243 (263)
.|++|++..++|+|.--=++..-|..|++.|+|.|=+
T Consensus 63 al~~I~~~~~iPlVADIHFd~~lAl~a~~~g~dkiRI 99 (346)
T TIGR00612 63 AFEAIKEGTNVPLVADIHFDYRLAALAMAKGVAKVRI 99 (346)
T ss_pred hHHHHHhCCCCCEEEeeCCCcHHHHHHHHhccCeEEE
Confidence 5778999999999988668888999999999999865
No 408
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=74.79 E-value=23 Score=32.05 Aligned_cols=25 Identities=12% Similarity=0.055 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccC
Q 039466 128 KRDMAATLVQRAERNGFMALVLTAD 152 (263)
Q Consensus 128 d~~~~~~li~ra~~aG~~al~vTvD 152 (263)
|.+.++++++...+.|++.|++.--
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~Gs 48 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAAGG 48 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCC
Confidence 5667889999999999999886443
No 409
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.71 E-value=9 Score=34.95 Aligned_cols=48 Identities=19% Similarity=0.136 Sum_probs=37.8
Q ss_pred HHHHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCCEEEEcCCCCCCCCC
Q 039466 206 KDIEWLRSITN-LPILIKGVLTREDAIKAVEVGVAGIIVSNHGARQLDY 253 (263)
Q Consensus 206 ~dl~~lr~~~~-lPiilKGI~s~eDA~~a~~~G~dgI~VSNHGGRqlD~ 253 (263)
+.++.+|+..+ ...|.=.+.+.|+|.+|+++|+|.|.+.|-+=-+|-.
T Consensus 184 ~av~~~r~~~~~~~~I~VEv~tleea~eA~~~GaD~I~LDn~~~e~l~~ 232 (288)
T PRK07428 184 EAITRIRQRIPYPLTIEVETETLEQVQEALEYGADIIMLDNMPVDLMQQ 232 (288)
T ss_pred HHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCCEEEECCCCHHHHHH
Confidence 45888888876 3445556899999999999999999999877554443
No 410
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=74.70 E-value=65 Score=29.03 Aligned_cols=79 Identities=19% Similarity=0.118 Sum_probs=50.6
Q ss_pred cceeecccCCcccCCChhHHHHHHHHHH-CCCc--eeecCCC---CccHHH-------HHHhccc-------c-ccCHHH
Q 039466 73 ASIIIAPTGLHKLANPEGEVATARAAAS-CNTI--MVLSFTS---SCSIEE-------VAASCNA-------A-YKKRDM 131 (263)
Q Consensus 73 ~Pi~iaP~~~~~l~~~~ge~a~AraA~~-~gi~--~~lss~s---~~siee-------V~~~~~~-------~-~~d~~~ 131 (263)
+|.++.|+.-.+-.+.++-..+.+-.-+ .|+- ++.||.+ +.|.|| +.+...+ + -.+-+.
T Consensus 8 ~~a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ 87 (293)
T PRK04147 8 YAALLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAE 87 (293)
T ss_pred eeeeECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHH
Confidence 4667777765555566666677777777 6653 3455533 345555 2223332 1 235566
Q ss_pred HHHHHHHHHHcCCCEEEEcc
Q 039466 132 AATLVQRAERNGFMALVLTA 151 (263)
Q Consensus 132 ~~~li~ra~~aG~~al~vTv 151 (263)
+.++.+.|+++|++++++..
T Consensus 88 ai~~a~~a~~~Gad~v~v~~ 107 (293)
T PRK04147 88 AQELAKYATELGYDAISAVT 107 (293)
T ss_pred HHHHHHHHHHcCCCEEEEeC
Confidence 78889999999999999874
No 411
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=74.46 E-value=8.6 Score=34.59 Aligned_cols=42 Identities=21% Similarity=0.189 Sum_probs=34.9
Q ss_pred HHHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCCEEEEcCCCC
Q 039466 207 DIEWLRSITN-LPILIKGVLTREDAIKAVEVGVAGIIVSNHGA 248 (263)
Q Consensus 207 dl~~lr~~~~-lPiilKGI~s~eDA~~a~~~G~dgI~VSNHGG 248 (263)
.++.+|+..+ ...|.-.+-+.|+|++|.+.|+|.|.+.|-+-
T Consensus 167 av~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld~~~~ 209 (265)
T TIGR00078 167 AVKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLDNMKP 209 (265)
T ss_pred HHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCH
Confidence 4888888876 45666678999999999999999999988543
No 412
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=74.41 E-value=42 Score=30.11 Aligned_cols=93 Identities=12% Similarity=0.094 Sum_probs=55.3
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCC--CccHHHHHHHhcCCCC
Q 039466 126 YKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDT--GSNLEAYAKETMDPSL 203 (263)
Q Consensus 126 ~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 203 (263)
+.|.+.+.++++...++|++.|=+.+=. +-| +.++. ..+..+.+..-..-.-
T Consensus 25 ~P~~~~~~~~~~~l~~~Gad~iElGiPf--------------SDP------------~aDGpvIq~a~~rAL~~g~~~~~ 78 (263)
T CHL00200 25 DPDIVITKKALKILDKKGADIIELGIPY--------------SDP------------LADGPIIQEASNRALKQGINLNK 78 (263)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCC--------------CCC------------CccCHHHHHHHHHHHHcCCCHHH
Confidence 3467788899999999998876654421 111 00000 0011111111111122
Q ss_pred CHHHHHHHHhhcCCCEEEEecCCH------H-HHHHHHHcCCCEEEEc
Q 039466 204 SWKDIEWLRSITNLPILIKGVLTR------E-DAIKAVEVGVAGIIVS 244 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKGI~s~------e-DA~~a~~~G~dgI~VS 244 (263)
.|+.++.+|+..+.|+|+=+=.++ | =...|.++|+|||+|-
T Consensus 79 ~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviip 126 (263)
T CHL00200 79 ILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIP 126 (263)
T ss_pred HHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEec
Confidence 467889999888899988774332 2 2677889999999873
No 413
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=73.96 E-value=7.4 Score=34.79 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=32.5
Q ss_pred CHHHHHHHHhhcCCCEEEEe-cC--CHHHHHHHH----HcCCCEEEE
Q 039466 204 SWKDIEWLRSITNLPILIKG-VL--TREDAIKAV----EVGVAGIIV 243 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKG-I~--s~eDA~~a~----~~G~dgI~V 243 (263)
+.+.++++.+..++||++=| |- +.+++...+ ++|++|+.+
T Consensus 184 ~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~ 230 (267)
T PRK07226 184 DPESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAV 230 (267)
T ss_pred CHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEeh
Confidence 45778888887789999988 87 777777765 999999965
No 414
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=73.56 E-value=44 Score=29.15 Aligned_cols=97 Identities=18% Similarity=0.228 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHCCCceeecCCCC----ccHHHHHHhccc------cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcc
Q 039466 89 EGEVATARAAASCNTIMVLSFTSS----CSIEEVAASCNA------AYKKRDMAATLVQRAERNGFMALVLTADTPRLDR 158 (263)
Q Consensus 89 ~ge~a~AraA~~~gi~~~lss~s~----~sieeV~~~~~~------~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~ 158 (263)
+--+.++++.-+.|++-+==++.+ .+|+++++..|. -.-|. +-+++|.++|++-+| |
T Consensus 25 e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~----~q~~~a~~aGa~fiV-s-------- 91 (211)
T COG0800 25 EEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPEALIGAGTVLNP----EQARQAIAAGAQFIV-S-------- 91 (211)
T ss_pred HHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEccccccCH----HHHHHHHHcCCCEEE-C--------
Confidence 444489999999998876444433 355666666553 11122 336667778876554 1
Q ss_pred hHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCC
Q 039466 159 READIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGV 238 (263)
Q Consensus 159 R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~ 238 (263)
|.++ .++-......++|++ =|++|+-++..|.++|+
T Consensus 92 ------------------------------------------P~~~-~ev~~~a~~~~ip~~-PG~~TptEi~~Ale~G~ 127 (211)
T COG0800 92 ------------------------------------------PGLN-PEVAKAANRYGIPYI-PGVATPTEIMAALELGA 127 (211)
T ss_pred ------------------------------------------CCCC-HHHHHHHHhCCCccc-CCCCCHHHHHHHHHcCh
Confidence 1121 133344455566654 49999999999999999
Q ss_pred CEEE
Q 039466 239 AGII 242 (263)
Q Consensus 239 dgI~ 242 (263)
+.+=
T Consensus 128 ~~lK 131 (211)
T COG0800 128 SALK 131 (211)
T ss_pred hhee
Confidence 8763
No 415
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=73.26 E-value=7.4 Score=33.01 Aligned_cols=36 Identities=25% Similarity=0.238 Sum_probs=30.8
Q ss_pred HHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEE
Q 039466 206 KDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGI 241 (263)
Q Consensus 206 ~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI 241 (263)
+.+..+.+..+.++|+.||-+.++...+.+.|++.+
T Consensus 192 ~~l~~~~~~~~~~via~gVe~~~~~~~~~~~gi~~~ 227 (240)
T cd01948 192 RAIIALAHSLGLKVVAEGVETEEQLELLRELGCDYV 227 (240)
T ss_pred HHHHHHHHHCCCeEEEEecCCHHHHHHHHHcCCCee
Confidence 345556667889999999999999999999999876
No 416
>PLN02334 ribulose-phosphate 3-epimerase
Probab=73.18 E-value=8.2 Score=33.57 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=34.1
Q ss_pred CHHHHHHHHhh-cCCCEEEEecCCHHHHHHHHHcCCCEEEEcC
Q 039466 204 SWKDIEWLRSI-TNLPILIKGVLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 204 ~W~dl~~lr~~-~~lPiilKGI~s~eDA~~a~~~G~dgI~VSN 245 (263)
..+.++.+++. -+.||++=|=.+++++..+.++|+|+|+|+.
T Consensus 161 ~~~~i~~~~~~~~~~~I~a~GGI~~e~i~~l~~aGad~vvvgs 203 (229)
T PLN02334 161 MMDKVRALRKKYPELDIEVDGGVGPSTIDKAAEAGANVIVAGS 203 (229)
T ss_pred HHHHHHHHHHhCCCCcEEEeCCCCHHHHHHHHHcCCCEEEECh
Confidence 34667888776 3579988874499999999999999999874
No 417
>PLN02591 tryptophan synthase
Probab=73.14 E-value=51 Score=29.39 Aligned_cols=93 Identities=12% Similarity=0.097 Sum_probs=54.3
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCC--CccHHHHHHHhcCCCC
Q 039466 126 YKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDT--GSNLEAYAKETMDPSL 203 (263)
Q Consensus 126 ~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 203 (263)
+.|.+.+.++++...++|++.|=+.+= . +-| +.++. ..+..+....-..-.-
T Consensus 12 ~P~~e~~~~~~~~l~~~Gad~iElGiP--f------------SDP------------~aDGpvIq~a~~rAL~~G~~~~~ 65 (250)
T PLN02591 12 DPDLDTTAEALRLLDACGADVIELGVP--Y------------SDP------------LADGPVIQAAATRALEKGTTLDS 65 (250)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCC--C------------CCC------------cccCHHHHHHHHHHHHcCCCHHH
Confidence 356777889899888999887665442 1 111 00000 0011111111111112
Q ss_pred CHHHHHHHHhhcCCCEEEEecCCH------HH-HHHHHHcCCCEEEEc
Q 039466 204 SWKDIEWLRSITNLPILIKGVLTR------ED-AIKAVEVGVAGIIVS 244 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKGI~s~------eD-A~~a~~~G~dgI~VS 244 (263)
.|+.++.+|+..+.|+|+=+=.++ |+ .++|.++|+||++|-
T Consensus 66 ~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~Gviip 113 (250)
T PLN02591 66 VISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVP 113 (250)
T ss_pred HHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeC
Confidence 467788888888899998774332 22 667789999999975
No 418
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=72.98 E-value=42 Score=31.45 Aligned_cols=44 Identities=20% Similarity=0.397 Sum_probs=32.5
Q ss_pred HHHHHHHhhcCCCEEEEec----CCHHHHHHHHHcCCCEEEE--cCCCCC
Q 039466 206 KDIEWLRSITNLPILIKGV----LTREDAIKAVEVGVAGIIV--SNHGAR 249 (263)
Q Consensus 206 ~dl~~lr~~~~lPiilKGI----~s~eDA~~a~~~G~dgI~V--SNHGGR 249 (263)
+-++++++..++||-+-+= |...-+..|+++||+.|.+ .+-|+|
T Consensus 175 ~lv~~l~~~~~v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiGer 224 (365)
T TIGR02660 175 ELVRALRQAVDLPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLGER 224 (365)
T ss_pred HHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeeccccc
Confidence 4577888888888744442 6777889999999999984 455655
No 419
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=72.83 E-value=9.8 Score=34.53 Aligned_cols=44 Identities=23% Similarity=0.260 Sum_probs=36.0
Q ss_pred CHHH-HHHHHhhcCC-CEEEEecCCHHHHHHHHHcCCCEEEEcCCC
Q 039466 204 SWKD-IEWLRSITNL-PILIKGVLTREDAIKAVEVGVAGIIVSNHG 247 (263)
Q Consensus 204 ~W~d-l~~lr~~~~l-PiilKGI~s~eDA~~a~~~G~dgI~VSNHG 247 (263)
+|.. ++..|+..+- |-|==+|-|.|++.+|+++|+|-|++=|-.
T Consensus 173 ~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLDNm~ 218 (280)
T COG0157 173 SITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLDNMS 218 (280)
T ss_pred cHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEecCCC
Confidence 7875 8999988764 446667899999999999999999877753
No 420
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=72.82 E-value=38 Score=28.75 Aligned_cols=79 Identities=14% Similarity=0.077 Sum_probs=48.4
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHH
Q 039466 127 KKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWK 206 (263)
Q Consensus 127 ~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 206 (263)
.|.....+.++++.++|++.|-+.+--.. | .| ...+.-+
T Consensus 13 ~~~~~~~~~~~~~~~~G~~~i~l~~~d~~-----------~-~~-----------------------------~~~~~~~ 51 (220)
T PRK05581 13 ADFARLGEEVKAVEAAGADWIHVDVMDGH-----------F-VP-----------------------------NLTIGPP 51 (220)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCccCC-----------c-CC-----------------------------CcCcCHH
Confidence 46667778899999999888777421000 0 00 1123457
Q ss_pred HHHHHHhhcCCCE--EEEecCCHHHHHHHHHcCCCEEEEcCCCC
Q 039466 207 DIEWLRSITNLPI--LIKGVLTREDAIKAVEVGVAGIIVSNHGA 248 (263)
Q Consensus 207 dl~~lr~~~~lPi--ilKGI~s~eDA~~a~~~G~dgI~VSNHGG 248 (263)
.++++++.++.|+ -++.=-..+....+.++|+|+|.| |++
T Consensus 52 ~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~v--h~~ 93 (220)
T PRK05581 52 VVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITF--HVE 93 (220)
T ss_pred HHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE--eec
Confidence 7888888765332 133222344667778999999776 554
No 421
>PLN02979 glycolate oxidase
Probab=72.68 E-value=7.3 Score=36.75 Aligned_cols=41 Identities=27% Similarity=0.533 Sum_probs=34.2
Q ss_pred HHHHHHHHhhc--CCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 205 WKDIEWLRSIT--NLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 205 W~dl~~lr~~~--~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
-+-|.++++.. ++|||+-| |.+..|+.+|+-+|+|++.|+.
T Consensus 265 ~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGr 308 (366)
T PLN02979 265 ISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 308 (366)
T ss_pred HHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcH
Confidence 34566676654 48999999 9999999999999999999864
No 422
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=72.46 E-value=26 Score=31.29 Aligned_cols=73 Identities=26% Similarity=0.263 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHH
Q 039466 128 KRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKD 207 (263)
Q Consensus 128 d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~d 207 (263)
|.+...++++...+.|++.+++.--+--. ..+|++.
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v~GstGE~--------------------------------------------~~lt~~E 54 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVCGTTGES--------------------------------------------PTLSDEE 54 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcch--------------------------------------------hhCCHHH
Q ss_pred ----HHHHHhhcCCCE-EEEec------CCHHHHHHHHHcCCCEEEEc
Q 039466 208 ----IEWLRSITNLPI-LIKGV------LTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 208 ----l~~lr~~~~lPi-ilKGI------~s~eDA~~a~~~G~dgI~VS 244 (263)
++..++..+..+ |+=|| .+.+-|+.|.++|+|+|++.
T Consensus 55 r~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~ 102 (284)
T cd00950 55 HEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVV 102 (284)
T ss_pred HHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEc
No 423
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=72.42 E-value=11 Score=33.88 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHhhcC--CCEEEEecCCHHHHHHHHHcCCCEEEEcC
Q 039466 201 PSLSWKDIEWLRSITN--LPILIKGVLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 201 ~~~~W~dl~~lr~~~~--lPiilKGI~s~eDA~~a~~~G~dgI~VSN 245 (263)
.+++-++++++.+..+ +|++.=|=.+.+.+...++.|||+|.||.
T Consensus 205 d~~~~e~lk~~v~~~~~~ipi~AsGGI~~~ni~~~a~~Gvd~Isvga 251 (265)
T TIGR00078 205 DNMKPEEIKEAVQLLKGRVLLEASGGITLDNLEEYAETGVDVISSGA 251 (265)
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEECCCCHHHHHHHHHcCCCEEEeCH
Confidence 3466788888887654 89999986699999999999999999963
No 424
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=72.41 E-value=7.5 Score=33.70 Aligned_cols=44 Identities=23% Similarity=0.408 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 202 SLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
.++.+-+..+...+.-|+++-| |...||-+++...||+|+.|..
T Consensus 167 G~~~E~l~~~~~~s~~pVllGGGV~g~Edlel~~~~Gv~gvLvaT 211 (229)
T COG1411 167 GPDYELLTKVLELSEHPVLLGGGVGGMEDLELLLGMGVSGVLVAT 211 (229)
T ss_pred CCCHHHHHHHHHhccCceeecCCcCcHHHHHHHhcCCCceeeehh
Confidence 3677889999999999999988 9999999999999999999854
No 425
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=72.35 E-value=6.1 Score=33.45 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=29.3
Q ss_pred HHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEE
Q 039466 206 KDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGI 241 (263)
Q Consensus 206 ~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI 241 (263)
+.+..+.+..++.+|+.||-+.++...+.+.||+.+
T Consensus 193 ~~l~~~~~~~~~~via~gVe~~~~~~~l~~~G~~~~ 228 (236)
T PF00563_consen 193 QSLINLAKSLGIKVIAEGVESEEQLELLKELGVDYI 228 (236)
T ss_dssp HHHHHHHHHTT-EEEEECE-SHHHHHHHHHTTESEE
T ss_pred HHHHHHhhccccccceeecCCHHHHHHHHHcCCCEE
Confidence 345566677899999999999999999999999976
No 426
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=72.10 E-value=17 Score=32.27 Aligned_cols=39 Identities=21% Similarity=0.357 Sum_probs=33.5
Q ss_pred HHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEE
Q 039466 205 WKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIV 243 (263)
Q Consensus 205 W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~V 243 (263)
.+-+++..++..+|+-+=| |.+.||+++.+.+|+|=|-|
T Consensus 63 ~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSI 102 (256)
T COG0107 63 LDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSI 102 (256)
T ss_pred HHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeee
Confidence 4557778888899998888 99999999999999998754
No 427
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=72.04 E-value=55 Score=29.29 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=30.0
Q ss_pred CHHHHHHHH-hhcCCCEEEEecCC-----HH--HHHHHHHcCCCEEEEc
Q 039466 204 SWKDIEWLR-SITNLPILIKGVLT-----RE--DAIKAVEVGVAGIIVS 244 (263)
Q Consensus 204 ~W~dl~~lr-~~~~lPiilKGI~s-----~e--DA~~a~~~G~dgI~VS 244 (263)
.++.++.+| +..+.|+++=+=.+ -. =.+.|.++|+||++|-
T Consensus 76 ~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviip 124 (258)
T PRK13111 76 VFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIP 124 (258)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEEC
Confidence 356788888 55789998777332 22 2778889999999985
No 428
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=72.02 E-value=11 Score=34.00 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=35.1
Q ss_pred HHHHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCCEEEEcCCC
Q 039466 206 KDIEWLRSITN-LPILIKGVLTREDAIKAVEVGVAGIIVSNHG 247 (263)
Q Consensus 206 ~dl~~lr~~~~-lPiilKGI~s~eDA~~a~~~G~dgI~VSNHG 247 (263)
..++.+|+..+ ...|.-.+.|.+++.+|++.|+|.|.+.|-.
T Consensus 169 ~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~~ 211 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNMS 211 (269)
T ss_pred HHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCCC
Confidence 45889999876 4567777999999999999999999997743
No 429
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=71.42 E-value=29 Score=31.42 Aligned_cols=72 Identities=21% Similarity=0.151 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHH
Q 039466 128 KRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKD 207 (263)
Q Consensus 128 d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~d 207 (263)
|.+.+.++++...+.|+++|++.=-+--. ..+|+++
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~GstGE~--------------------------------------------~~Ls~~E 54 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGGTSGEP--------------------------------------------GSLTLEE 54 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCccc--------------------------------------------ccCCHHH
Q ss_pred ----HHHHHhhcCCCE-EEEec------CCHHHHHHHHHcCCCEEEE
Q 039466 208 ----IEWLRSITNLPI-LIKGV------LTREDAIKAVEVGVAGIIV 243 (263)
Q Consensus 208 ----l~~lr~~~~lPi-ilKGI------~s~eDA~~a~~~G~dgI~V 243 (263)
++..++..+..+ |+=|| .+.+-|+.|.+.|+|+++|
T Consensus 55 r~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v 101 (294)
T TIGR02313 55 RKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMV 101 (294)
T ss_pred HHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEE
No 430
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=71.38 E-value=23 Score=30.59 Aligned_cols=42 Identities=24% Similarity=0.283 Sum_probs=31.9
Q ss_pred HHHHHHHhhcC-CCEEEEec----CCHHHHHHHHHcCCCEEEEcCCC
Q 039466 206 KDIEWLRSITN-LPILIKGV----LTREDAIKAVEVGVAGIIVSNHG 247 (263)
Q Consensus 206 ~dl~~lr~~~~-lPiilKGI----~s~eDA~~a~~~G~dgI~VSNHG 247 (263)
+-++++++.++ +||=+-+= +...-+..|+++||+.|.+|=.|
T Consensus 170 ~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~G 216 (237)
T PF00682_consen 170 ELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGG 216 (237)
T ss_dssp HHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGG
T ss_pred HHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCcc
Confidence 45788999998 78877662 66778899999999999887544
No 431
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=71.37 E-value=50 Score=33.91 Aligned_cols=62 Identities=5% Similarity=0.073 Sum_probs=44.0
Q ss_pred HHHHHHHHCCCceeecCCCCccHHHHHHhccc-cccCHHHHHHHHHHHHHcCCCEEEEccCCC
Q 039466 93 ATARAAASCNTIMVLSFTSSCSIEEVAASCNA-AYKKRDMAATLVQRAERNGFMALVLTADTP 154 (263)
Q Consensus 93 a~AraA~~~gi~~~lss~s~~sieeV~~~~~~-~~~d~~~~~~li~ra~~aG~~al~vTvD~~ 154 (263)
.+.+.|++.|+++=+|.++..--++|....++ +-.=-+...+.++-+++.||.-+++.+.+.
T Consensus 214 ~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGdtp~gmVeSAle~~~i~e~~~f~diviS~KsS 276 (733)
T PLN02925 214 PLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKAS 276 (733)
T ss_pred HHHHHHHHCCCCEEEecCCcCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEcC
Confidence 58999999999999999986434556666532 111112234556777899999999999864
No 432
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=71.33 E-value=56 Score=28.89 Aligned_cols=41 Identities=29% Similarity=0.471 Sum_probs=30.5
Q ss_pred HHHHHHhhcCCCEEEEec----CCHHHHHHHHHcCCCEEEEcCCC
Q 039466 207 DIEWLRSITNLPILIKGV----LTREDAIKAVEVGVAGIIVSNHG 247 (263)
Q Consensus 207 dl~~lr~~~~lPiilKGI----~s~eDA~~a~~~G~dgI~VSNHG 247 (263)
-++.+++.+++||-+-+= +...-+..|+++||+-|..|=.|
T Consensus 173 lv~~l~~~~~~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G 217 (259)
T cd07939 173 LIRRLRAATDLPLEFHAHNDLGLATANTLAAVRAGATHVSVTVNG 217 (259)
T ss_pred HHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhCCCEEEEeccc
Confidence 467788887777644441 67778889999999999877553
No 433
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=71.29 E-value=43 Score=29.23 Aligned_cols=76 Identities=16% Similarity=0.028 Sum_probs=53.9
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCC--C
Q 039466 126 YKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPS--L 203 (263)
Q Consensus 126 ~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 203 (263)
-.|.....+.+++.+++|++- +|+|.-- ..+-|+ +
T Consensus 15 ~~d~~~l~~~~~~l~~~~~~~--~H~DimD-----------------------------------------g~fvpn~~~ 51 (228)
T PTZ00170 15 AADFSKLADEAQDVLSGGADW--LHVDVMD-----------------------------------------GHFVPNLSF 51 (228)
T ss_pred hcCHHHHHHHHHHHHHcCCCE--EEEeccc-----------------------------------------CccCCCcCc
Confidence 356677788899999999554 5677411 012233 3
Q ss_pred CHHHHHHHHhhc-CCCEEEEe-cCCHHHHH-HHHHcCCCEEEEc
Q 039466 204 SWKDIEWLRSIT-NLPILIKG-VLTREDAI-KAVEVGVAGIIVS 244 (263)
Q Consensus 204 ~W~dl~~lr~~~-~lPiilKG-I~s~eDA~-~a~~~G~dgI~VS 244 (263)
.-+.++|||+.+ +.|+-+|= +.+++... .+.++|+|-|-|-
T Consensus 52 G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~itvH 95 (228)
T PTZ00170 52 GPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTFH 95 (228)
T ss_pred CHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEEEe
Confidence 447899999998 89999997 57788766 4557999988773
No 434
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=71.28 E-value=12 Score=36.26 Aligned_cols=45 Identities=13% Similarity=0.274 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHhhc---------CCCEEEEecCCHHHHHHHHHcCCCEEEEcC
Q 039466 201 PSLSWKDIEWLRSIT---------NLPILIKGVLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 201 ~~~~W~dl~~lr~~~---------~lPiilKGI~s~eDA~~a~~~G~dgI~VSN 245 (263)
+...|+.++++++.. ++|++.=|=.+++++..+.++|++||-|..
T Consensus 340 ~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI~~~Ni~~vl~aGa~GVAVVS 393 (437)
T PRK12290 340 KPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGIDQSNAEQVWQCGVSSLAVVR 393 (437)
T ss_pred CCCCHHHHHHHHHHhhhccccccCCCCEEEECCcCHHHHHHHHHcCCCEEEEeh
Confidence 457899998887765 799998885599999999999999998875
No 435
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=71.27 E-value=30 Score=33.05 Aligned_cols=21 Identities=5% Similarity=0.007 Sum_probs=15.8
Q ss_pred HHHHHHcCCCEEEEcCCCCCC
Q 039466 230 AIKAVEVGVAGIIVSNHGARQ 250 (263)
Q Consensus 230 A~~a~~~G~dgI~VSNHGGRq 250 (263)
+++..=+|+|.+.+.|++||-
T Consensus 271 ~kl~RLaGaD~~~~~~~~Gk~ 291 (391)
T cd08209 271 GTLMRLAGADAVLFPSPYGSV 291 (391)
T ss_pred HHHHHHcCCCccccCCccCCc
Confidence 444445799999999999864
No 436
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=71.13 E-value=11 Score=33.98 Aligned_cols=105 Identities=17% Similarity=0.128 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCC---CCccHHHHHHHhcCCCC-CHH
Q 039466 131 MAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSD---TGSNLEAYAKETMDPSL-SWK 206 (263)
Q Consensus 131 ~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~W~ 206 (263)
.+.++++.+++.|.+..+++.=-..+|.|.-+.+.-. .-+ ...|.-++.+. .. .|-.+. +.. .-+
T Consensus 104 ~t~~~v~~~~~~~~~~~i~~TRKt~Pg~r~~~k~Av~-~GG----g~~HR~gL~d~vlikd-nH~~~~-----g~~~~~~ 172 (272)
T cd01573 104 ATAEMVAAARAVNPDIVVATTRKAFPGTRKLALKAIL-AGG----AVPHRLGLSETILVFA-EHRAFL-----GGPEPLK 172 (272)
T ss_pred HHHHHHHHHhhcCCCcEEEEeCCCCccchHHHHHHHH-hcC----ccccccCCCcceEeeh-hHHHHh-----CCchHHH
Confidence 4567788887778777776644334566654443100 000 00000011110 11 111111 111 124
Q ss_pred HHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEEcCC
Q 039466 207 DIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 207 dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~VSNH 246 (263)
.++.+|+..+-..|.=.+.+.++|.+|++.|+|.|.+.|-
T Consensus 173 av~~~R~~~~~~~IgVev~t~eea~~A~~~gaD~I~ld~~ 212 (272)
T cd01573 173 ALARLRATAPEKKIVVEVDSLEEALAAAEAGADILQLDKF 212 (272)
T ss_pred HHHHHHHhCCCCeEEEEcCCHHHHHHHHHcCCCEEEECCC
Confidence 6888888765334555579999999999999999998874
No 437
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=71.08 E-value=41 Score=32.68 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=33.4
Q ss_pred HHHHHHHhhcCCCEEEEec----CCHHHHHHHHHcCCCEEEEcCCC
Q 039466 206 KDIEWLRSITNLPILIKGV----LTREDAIKAVEVGVAGIIVSNHG 247 (263)
Q Consensus 206 ~dl~~lr~~~~lPiilKGI----~s~eDA~~a~~~G~dgI~VSNHG 247 (263)
+-++.||+.+++||-+=.= +...-+..|+++||+.|.+|=.|
T Consensus 187 ~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~g 232 (448)
T PRK12331 187 ELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISP 232 (448)
T ss_pred HHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcCCCEEEeeccc
Confidence 4578888888888865542 67888999999999999987654
No 438
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=70.95 E-value=13 Score=34.74 Aligned_cols=20 Identities=30% Similarity=0.117 Sum_probs=17.1
Q ss_pred HHHHHHHHcCCCEEEEccCC
Q 039466 134 TLVQRAERNGFMALVLTADT 153 (263)
Q Consensus 134 ~li~ra~~aG~~al~vTvD~ 153 (263)
.-++.|-+.|+.|+.+|+..
T Consensus 150 ~sVedAlrLGAdAV~~tvy~ 169 (348)
T PRK09250 150 ASVEDALRLGAVAVGATIYF 169 (348)
T ss_pred ecHHHHHHCCCCEEEEEEec
Confidence 33788999999999999985
No 439
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=70.35 E-value=69 Score=27.49 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=25.7
Q ss_pred HHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEE
Q 039466 208 IEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIV 243 (263)
Q Consensus 208 l~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~V 243 (263)
+-......++|++ =|++|+-++..|.++|++.|=+
T Consensus 93 v~~~~~~~~i~~i-PG~~TptEi~~A~~~G~~~vK~ 127 (196)
T PF01081_consen 93 VIEYAREYGIPYI-PGVMTPTEIMQALEAGADIVKL 127 (196)
T ss_dssp HHHHHHHHTSEEE-EEESSHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHcCCccc-CCcCCHHHHHHHHHCCCCEEEE
Confidence 3334445566655 5999999999999999998755
No 440
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=70.23 E-value=8.9 Score=36.23 Aligned_cols=41 Identities=27% Similarity=0.533 Sum_probs=34.3
Q ss_pred HHHHHHHHhhc--CCCEEEEe-cCCHHHHHHHHHcCCCEEEEcC
Q 039466 205 WKDIEWLRSIT--NLPILIKG-VLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 205 W~dl~~lr~~~--~lPiilKG-I~s~eDA~~a~~~G~dgI~VSN 245 (263)
-+-|.++++.. ++|||+-| |.+..|+.+|+-+|++++.|+.
T Consensus 266 ~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr 309 (367)
T PLN02493 266 ISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 309 (367)
T ss_pred HHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcH
Confidence 34566676654 48999999 9999999999999999999864
No 441
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=70.09 E-value=10 Score=33.91 Aligned_cols=44 Identities=20% Similarity=0.217 Sum_probs=38.3
Q ss_pred CHHHHHHHHhhcCCCEEEEec--------CCHHHHHHHHHcCCCEEEEcCCC
Q 039466 204 SWKDIEWLRSITNLPILIKGV--------LTREDAIKAVEVGVAGIIVSNHG 247 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKGI--------~s~eDA~~a~~~G~dgI~VSNHG 247 (263)
-|+.|..|++..++-+++=.- ++.+.++.++++|+|.|-..||=
T Consensus 18 v~~~Lp~lk~kyk~dfvI~N~ENaa~G~Git~k~y~~l~~~G~dviT~GNH~ 69 (266)
T COG1692 18 VKEHLPQLKSKYKIDFVIVNGENAAGGFGITEKIYKELLEAGADVITLGNHT 69 (266)
T ss_pred HHHHhHHHHHhhcCcEEEEcCccccCCcCCCHHHHHHHHHhCCCEEeccccc
Confidence 578899999999988776443 79999999999999999999994
No 442
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=69.72 E-value=81 Score=27.98 Aligned_cols=78 Identities=15% Similarity=0.144 Sum_probs=45.8
Q ss_pred ceeecccCCcccCCChhHHHHHHHHHHCCCc--eeecCCC---CccHHH-------HHHhccc-------c-ccCHHHHH
Q 039466 74 SIIIAPTGLHKLANPEGEVATARAAASCNTI--MVLSFTS---SCSIEE-------VAASCNA-------A-YKKRDMAA 133 (263)
Q Consensus 74 Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~--~~lss~s---~~siee-------V~~~~~~-------~-~~d~~~~~ 133 (263)
|..+.|+.-.+-.+.++-..+.+-..+.|+- ++.||.+ +.+.|| +++...+ + -.+-..+.
T Consensus 3 ~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i 82 (281)
T cd00408 3 PALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAI 82 (281)
T ss_pred CCeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHH
Confidence 5556666555445555656777777666653 3344433 234444 2233222 1 12444577
Q ss_pred HHHHHHHHcCCCEEEEcc
Q 039466 134 TLVQRAERNGFMALVLTA 151 (263)
Q Consensus 134 ~li~ra~~aG~~al~vTv 151 (263)
++.+.|+++|++++++..
T Consensus 83 ~~a~~a~~~Gad~v~v~p 100 (281)
T cd00408 83 ELARHAEEAGADGVLVVP 100 (281)
T ss_pred HHHHHHHHcCCCEEEECC
Confidence 888999999999999854
No 443
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=69.70 E-value=36 Score=30.40 Aligned_cols=46 Identities=15% Similarity=0.407 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEEcC---CCC
Q 039466 202 SLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSN---HGA 248 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~VSN---HGG 248 (263)
..+-++|+..++..++|+++--=.++|-+...+++ +||++|+. +||
T Consensus 191 ~~d~~el~~a~~~~~~pvlvGSGv~~eN~~~~l~~-adG~IvgT~lK~~G 239 (263)
T COG0434 191 PPDLEELKLAKEAVDTPVLVGSGVNPENIEELLKI-ADGVIVGTSLKKGG 239 (263)
T ss_pred CCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHHH-cCceEEEEEEccCC
Confidence 45778999999999999988666789999999998 99999985 455
No 444
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=69.64 E-value=18 Score=32.43 Aligned_cols=92 Identities=16% Similarity=0.292 Sum_probs=54.1
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCH
Q 039466 126 YKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSW 205 (263)
Q Consensus 126 ~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W 205 (263)
+.|.+.+.++++...++|++.|=+.+=.. -| . ..+..+++.........++.
T Consensus 20 ~P~~~~~~~~~~~l~~~GaD~iEiGiPfS--------------DP------------~--ADGpvIq~A~~rAL~~G~~~ 71 (259)
T PF00290_consen 20 YPDLETTLEILKALEEAGADIIEIGIPFS--------------DP------------V--ADGPVIQKASQRALKNGFTL 71 (259)
T ss_dssp SSSHHHHHHHHHHHHHTTBSSEEEE--SS--------------SC------------T--TSSHHHHHHHHHHHHTT--H
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCC--------------CC------------C--CCCHHHHHHHHHHHHCCCCH
Confidence 45778889999999999977765443210 01 0 00111122222222233444
Q ss_pred ----HHHHHHH-hhcCCCEEEEecCC------HH-HHHHHHHcCCCEEEEcC
Q 039466 206 ----KDIEWLR-SITNLPILIKGVLT------RE-DAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 206 ----~dl~~lr-~~~~lPiilKGI~s------~e-DA~~a~~~G~dgI~VSN 245 (263)
+-++++| +..+.|+|+=+=.+ .| =.+.|.++|+||++|-.
T Consensus 72 ~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipD 123 (259)
T PF00290_consen 72 EKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPD 123 (259)
T ss_dssp HHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETT
T ss_pred HHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcC
Confidence 5578888 78899999988422 23 36677789999999853
No 445
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=69.41 E-value=54 Score=29.16 Aligned_cols=42 Identities=24% Similarity=0.342 Sum_probs=31.3
Q ss_pred HHHHHHHhhcC---CCEEEEec----CCHHHHHHHHHcCCCEEEEcCCC
Q 039466 206 KDIEWLRSITN---LPILIKGV----LTREDAIKAVEVGVAGIIVSNHG 247 (263)
Q Consensus 206 ~dl~~lr~~~~---lPiilKGI----~s~eDA~~a~~~G~dgI~VSNHG 247 (263)
+-++.+++.++ +||-+-+= |...-+..|+++||+.|..|=.|
T Consensus 176 ~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~G 224 (268)
T cd07940 176 ELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVECTING 224 (268)
T ss_pred HHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeec
Confidence 35677888876 66644442 66677888999999999988666
No 446
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=69.41 E-value=9.5 Score=35.37 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=33.2
Q ss_pred HHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcC-CCEEEE
Q 039466 206 KDIEWLRSITNLPILIKG-VLTREDAIKAVEVG-VAGIIV 243 (263)
Q Consensus 206 ~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G-~dgI~V 243 (263)
+..+.+|+.+++|||.-| |.+++.|.++++-| +|.|-+
T Consensus 281 ~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~ 320 (341)
T PF00724_consen 281 DLAEAIKKAVKIPVIGVGGIRTPEQAEKALEEGKADLVAM 320 (341)
T ss_dssp HHHHHHHHHHSSEEEEESSTTHHHHHHHHHHTTSTSEEEE
T ss_pred hhhhhhhhhcCceEEEEeeecchhhhHHHHhcCCceEeec
Confidence 568999999999999999 78888899999876 998876
No 447
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=69.21 E-value=12 Score=32.44 Aligned_cols=43 Identities=28% Similarity=0.400 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHhhcC--CCEEEEe-cCCHHHHHHHHHcCCCEEEE
Q 039466 201 PSLSWKDIEWLRSITN--LPILIKG-VLTREDAIKAVEVGVAGIIV 243 (263)
Q Consensus 201 ~~~~W~dl~~lr~~~~--lPiilKG-I~s~eDA~~a~~~G~dgI~V 243 (263)
+..+-+|++-+++..+ +||.+-| |.+.+||...+++|++-|=.
T Consensus 158 ~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~riGt 203 (211)
T TIGR00126 158 GGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGASRIGA 203 (211)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhHHhCc
Confidence 4457788888887765 6666665 99999999999999987633
No 448
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=69.05 E-value=8.8 Score=36.85 Aligned_cols=78 Identities=18% Similarity=0.324 Sum_probs=49.4
Q ss_pred cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCC
Q 039466 125 AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLS 204 (263)
Q Consensus 125 ~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (263)
++.+.+.+.++++|.++.|..+|-|++=+ +|.|+ ..+.+
T Consensus 158 ~L~s~edtL~lv~ri~~tgi~ai~vh~rt-------~d~r~----------------------------------~~~~~ 196 (477)
T KOG2334|consen 158 LLDSKEDTLKLVKRICATGIAAITVHCRT-------RDERN----------------------------------QEPAT 196 (477)
T ss_pred ecCCcccHHHHHHHHHhcCCceEEEEeec-------cccCC----------------------------------CCCCC
Confidence 56777788888888888888888877643 23332 12234
Q ss_pred HHHHHHHHhhcC-CCEEEEe-cCC---HHHHHHHHH-cCCCEEEE
Q 039466 205 WKDIEWLRSITN-LPILIKG-VLT---REDAIKAVE-VGVAGIIV 243 (263)
Q Consensus 205 W~dl~~lr~~~~-lPiilKG-I~s---~eDA~~a~~-~G~dgI~V 243 (263)
-++|+.+....+ +|||+.| ++. -.|-..-.+ .|+++++|
T Consensus 197 ~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmi 241 (477)
T KOG2334|consen 197 KDYIREIAQACQMVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMI 241 (477)
T ss_pred HHHHHHHHHHhccceEeeccchhhHHhhhhHHHHHHHhccchhhh
Confidence 466666666666 8888888 554 444444433 56666655
No 449
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=68.83 E-value=16 Score=32.93 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=29.7
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCCEEEEcC--CCCCCCC
Q 039466 216 NLPILIKGVLTREDAIKAVEVGVAGIIVSN--HGARQLD 252 (263)
Q Consensus 216 ~lPiilKGI~s~eDA~~a~~~G~dgI~VSN--HGGRqlD 252 (263)
++|+++=|=.+++.+....+.|+|+|++|. | .+-+|
T Consensus 230 ~i~i~AsGGI~~~ni~~~~~~Gvd~I~vsai~~-a~~~D 267 (272)
T cd01573 230 PVLLAAAGGINIENAAAYAAAGADILVTSAPYY-AKPAD 267 (272)
T ss_pred CceEEEECCCCHHHHHHHHHcCCcEEEEChhhc-Ccccc
Confidence 689999984499999999999999998876 4 44444
No 450
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=68.49 E-value=42 Score=32.38 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=14.9
Q ss_pred HHHHHHcCCCEEEEcCCCCCC
Q 039466 230 AIKAVEVGVAGIIVSNHGARQ 250 (263)
Q Consensus 230 A~~a~~~G~dgI~VSNHGGRq 250 (263)
+++..=+|+|.|.+-|+|||-
T Consensus 304 ~Kl~RLaGaD~ih~~~~gg~~ 324 (424)
T cd08208 304 TKLQRLAGLDVVIMPGFGPRM 324 (424)
T ss_pred HHHHHHcCCCeeeccCCCCCc
Confidence 334444788888888888864
No 451
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=68.46 E-value=2.2 Score=36.50 Aligned_cols=44 Identities=23% Similarity=0.431 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHhh-cCCCEEEEecCCHHHHHHHHH-cCCCEEEEcC
Q 039466 202 SLSWKDIEWLRSI-TNLPILIKGVLTREDAIKAVE-VGVAGIIVSN 245 (263)
Q Consensus 202 ~~~W~dl~~lr~~-~~lPiilKGI~s~eDA~~a~~-~G~dgI~VSN 245 (263)
.++|+.++.+.+. .+.|+++=|=++++....|++ .+..||+||.
T Consensus 132 ~~dw~~~~~~~~~~~~~p~iLAGGl~p~NV~~ai~~~~p~gvDvsS 177 (197)
T PF00697_consen 132 TFDWSLLKKIVESYSPKPVILAGGLNPENVREAIRQVRPYGVDVSS 177 (197)
T ss_dssp ---GGGGCCCHHT-GTSTEEEESS--TTTHHHHHHHC--SEEEESG
T ss_pred ccCHHHhhhhhhhcccCcEEEEcCCChHHHHHHHHhcCceEEEeCC
Confidence 5799998888774 589999999999999999999 8999999986
No 452
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=68.45 E-value=53 Score=30.58 Aligned_cols=47 Identities=17% Similarity=0.257 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHc-CCCEEEE--cCCCC
Q 039466 202 SLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEV-GVAGIIV--SNHGA 248 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~-G~dgI~V--SNHGG 248 (263)
.-+|+.+++|++.+++||.+=+ +.+.+|.+.+++. ++|.|.+ +-.||
T Consensus 224 ~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GG 274 (368)
T TIGR02534 224 AENREALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGG 274 (368)
T ss_pred cccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCC
Confidence 3468889999999999999977 6799999999886 4776543 44455
No 453
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=68.24 E-value=37 Score=30.74 Aligned_cols=72 Identities=17% Similarity=0.068 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcC-CCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHH
Q 039466 128 KRDMAATLVQRAERNG-FMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWK 206 (263)
Q Consensus 128 d~~~~~~li~ra~~aG-~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 206 (263)
|.+.++++++...+.| ++.|++.--+--. ..++++
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~~GstGE~--------------------------------------------~~Lt~e 54 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYVGGSTGEN--------------------------------------------FMLSTE 54 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEECCccccc--------------------------------------------ccCCHH
Q ss_pred H----HHHHHhhcCCCE-EEEec------CCHHHHHHHHHcCCCEEEE
Q 039466 207 D----IEWLRSITNLPI-LIKGV------LTREDAIKAVEVGVAGIIV 243 (263)
Q Consensus 207 d----l~~lr~~~~lPi-ilKGI------~s~eDA~~a~~~G~dgI~V 243 (263)
. ++..++..+..+ |+=|| .+.+-|+.|.++|+|||+|
T Consensus 55 Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v 102 (290)
T TIGR00683 55 EKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSA 102 (290)
T ss_pred HHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEE
No 454
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=68.13 E-value=49 Score=33.26 Aligned_cols=42 Identities=21% Similarity=0.329 Sum_probs=32.4
Q ss_pred HHHHHHHhhcCCCEEEEec----CCHHHHHHHHHcCCCEEEEcCCC
Q 039466 206 KDIEWLRSITNLPILIKGV----LTREDAIKAVEVGVAGIIVSNHG 247 (263)
Q Consensus 206 ~dl~~lr~~~~lPiilKGI----~s~eDA~~a~~~G~dgI~VSNHG 247 (263)
+-++.||+.+++||-+=.= +...-+..|+++||+.|..|=.|
T Consensus 182 ~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAveaGa~~vd~ai~G 227 (582)
T TIGR01108 182 ELVSALKKRFGLPVHLHSHATTGMAEMALLKAIEAGADGIDTAISS 227 (582)
T ss_pred HHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCEEEecccc
Confidence 4578888988888754441 67778899999999999876554
No 455
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=68.07 E-value=42 Score=28.99 Aligned_cols=38 Identities=16% Similarity=0.069 Sum_probs=25.4
Q ss_pred HHhhcCCCEEEEe----c-----CCHHH----HHHHHHcCCCEEEEcCCCC
Q 039466 211 LRSITNLPILIKG----V-----LTRED----AIKAVEVGVAGIIVSNHGA 248 (263)
Q Consensus 211 lr~~~~lPiilKG----I-----~s~eD----A~~a~~~G~dgI~VSNHGG 248 (263)
+...+++|+|+-= + ++.++ ++.|.+.|+|.|-+++.+|
T Consensus 117 ~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~~~ 167 (235)
T cd00958 117 EAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYTGD 167 (235)
T ss_pred HHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCCCC
Confidence 3346788888731 1 34455 4448889999999987653
No 456
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=67.86 E-value=12 Score=33.17 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=32.1
Q ss_pred CHHHHHHHHhhcCCCEEEEe-cC--C----HHHHHHHHHcCCCEEEEc
Q 039466 204 SWKDIEWLRSITNLPILIKG-VL--T----REDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKG-I~--s----~eDA~~a~~~G~dgI~VS 244 (263)
+.+.++++++..++||++=| |. + .+.+..+.++|++||.++
T Consensus 180 ~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g 227 (258)
T TIGR01949 180 DIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVG 227 (258)
T ss_pred CHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehh
Confidence 56788899888899998866 76 5 455566669999999764
No 457
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=67.78 E-value=9.6 Score=32.95 Aligned_cols=40 Identities=25% Similarity=0.457 Sum_probs=33.2
Q ss_pred CCCHHHH-HHHHhhcCCCEEEEecCCHHHHHHHHH-cCCCEEEEcC
Q 039466 202 SLSWKDI-EWLRSITNLPILIKGVLTREDAIKAVE-VGVAGIIVSN 245 (263)
Q Consensus 202 ~~~W~dl-~~lr~~~~lPiilKGI~s~eDA~~a~~-~G~dgI~VSN 245 (263)
.++|+.+ +.+ +.|+++=|=+++|....|++ .+..||+||.
T Consensus 143 ~~dw~~l~~~~----~~p~~LAGGi~peNv~~ai~~~~p~gvDvsS 184 (210)
T PRK01222 143 TFDWSLLPAGL----AKPWILAGGLNPDNVAEAIRQVRPYGVDVSS 184 (210)
T ss_pred ccchHHhhhcc----CCCEEEECCCCHHHHHHHHHhcCCCEEEecC
Confidence 4689877 333 67999999999999999997 4999999964
No 458
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=67.66 E-value=22 Score=33.58 Aligned_cols=29 Identities=21% Similarity=0.504 Sum_probs=22.8
Q ss_pred CCCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 216 NLPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 216 ~lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
++.||+-| +.++.|+.+|+-+|||+|.++
T Consensus 274 ~V~Li~sGgl~t~~dv~kalaLGAD~v~ig 303 (368)
T PF01645_consen 274 RVSLIASGGLRTGDDVAKALALGADAVYIG 303 (368)
T ss_dssp CSEEEEESS--SHHHHHHHHHCT-SEEE-S
T ss_pred ceEEEEeCCccCHHHHHHHHhcCCCeeEec
Confidence 47899999 999999999999999999775
No 459
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=67.54 E-value=27 Score=32.46 Aligned_cols=87 Identities=15% Similarity=0.182 Sum_probs=56.5
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCH
Q 039466 126 YKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSW 205 (263)
Q Consensus 126 ~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W 205 (263)
.-..+...++++...++|++.|=++--.. .+......+ +...-+|
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg~g~g---l~g~s~~~G--------------------------------~~~~~~~ 64 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDG---LGGSSFNYG--------------------------------FSAHTDL 64 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCC---CCCccccCC--------------------------------CCCCChH
Confidence 33556677888888999999988873211 000000000 1122368
Q ss_pred HHHHHHHhhcC---CC-EEEEecCCHHHHHHHHHcCCCEEEEcCCC
Q 039466 206 KDIEWLRSITN---LP-ILIKGVLTREDAIKAVEVGVAGIIVSNHG 247 (263)
Q Consensus 206 ~dl~~lr~~~~---lP-iilKGI~s~eDA~~a~~~G~dgI~VSNHG 247 (263)
++++.+++..+ += +++-|+.+.+|.+.|.+.|++.|-|..|-
T Consensus 65 e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~ 110 (333)
T TIGR03217 65 EYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDAGARTVRVATHC 110 (333)
T ss_pred HHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHCCCCEEEEEecc
Confidence 88888877643 11 33356778999999999999999998874
No 460
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=67.36 E-value=50 Score=30.66 Aligned_cols=47 Identities=17% Similarity=0.276 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcC-CCEEE--EcCCCC
Q 039466 202 SLSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVG-VAGII--VSNHGA 248 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G-~dgI~--VSNHGG 248 (263)
.-+|+.+++|++.+++||.+=+ +.+++|.+.+++.| +|.|. ++..||
T Consensus 223 ~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GG 273 (355)
T cd03321 223 QHDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGG 273 (355)
T ss_pred CcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCC
Confidence 3478999999999999999877 58999999999865 66553 466676
No 461
>PRK07695 transcriptional regulator TenI; Provisional
Probab=67.33 E-value=15 Score=31.18 Aligned_cols=40 Identities=18% Similarity=0.079 Sum_probs=29.6
Q ss_pred HHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEEcCCC
Q 039466 208 IEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNHG 247 (263)
Q Consensus 208 l~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~VSNHG 247 (263)
++.+|+..+.-+|.-.+.+.+++++|.+.|+|.|+++.-.
T Consensus 86 ~~~~r~~~~~~~ig~s~~s~e~a~~a~~~Gadyi~~g~v~ 125 (201)
T PRK07695 86 VRSVREKFPYLHVGYSVHSLEEAIQAEKNGADYVVYGHVF 125 (201)
T ss_pred HHHHHHhCCCCEEEEeCCCHHHHHHHHHcCCCEEEECCCC
Confidence 5666766543345446899999999999999999876533
No 462
>PRK08227 autoinducer 2 aldolase; Validated
Probab=67.25 E-value=32 Score=31.04 Aligned_cols=84 Identities=13% Similarity=0.166 Sum_probs=48.8
Q ss_pred cccccceeecccCCcccCCChhHH--HHHHHHHHCCCceeecCCCCccHHHHHHhccc-------cccCHHHHHHHHHHH
Q 039466 69 YKISASIIIAPTGLHKLANPEGEV--ATARAAASCNTIMVLSFTSSCSIEEVAASCNA-------AYKKRDMAATLVQRA 139 (263)
Q Consensus 69 ~~~~~Pi~iaP~~~~~l~~~~ge~--a~AraA~~~gi~~~lss~s~~sieeV~~~~~~-------~~~d~~~~~~li~ra 139 (263)
+++-+|+++ ...-.+-...+.++ -.||.|+++|.=++=-.+...++++|.+++|- .-.+.+...++++.+
T Consensus 137 ~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y~~~~f~~vv~a~~vPVviaGG~k~~~~~~L~~v~~a 215 (264)
T PRK08227 137 LRYGMPVMA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYYVEEGFERITAGCPVPIVIAGGKKLPERDALEMCYQA 215 (264)
T ss_pred HHhCCcEEE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEecCCCHHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHH
Confidence 456677765 33211111112222 57888888885433322333478888887653 222445567888888
Q ss_pred HHcCCCEEEEccCC
Q 039466 140 ERNGFMALVLTADT 153 (263)
Q Consensus 140 ~~aG~~al~vTvD~ 153 (263)
-++|+..+.+.=+.
T Consensus 216 i~aGa~Gv~~GRNI 229 (264)
T PRK08227 216 IDEGASGVDMGRNI 229 (264)
T ss_pred HHcCCceeeechhh
Confidence 88998887765443
No 463
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=67.22 E-value=33 Score=31.97 Aligned_cols=45 Identities=24% Similarity=0.230 Sum_probs=36.0
Q ss_pred CHHHHHHHHhhcCCCEEEEe-cCC-HHHHHHHHHcC-CCEE--EEcCCCC
Q 039466 204 SWKDIEWLRSITNLPILIKG-VLT-REDAIKAVEVG-VAGI--IVSNHGA 248 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKG-I~s-~eDA~~a~~~G-~dgI--~VSNHGG 248 (263)
+|+.+++|++.+++||..=+ +.+ ++|++.+++.| +|.| .++-.||
T Consensus 228 d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GG 277 (368)
T cd03329 228 SISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGG 277 (368)
T ss_pred hHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCC
Confidence 67789999999999998876 677 99999999876 5655 4566676
No 464
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=67.18 E-value=95 Score=27.86 Aligned_cols=42 Identities=17% Similarity=0.070 Sum_probs=32.8
Q ss_pred HHHHHHHhhcC-CCEEEEec----CCHHHHHHHHHcCCCEEEEcCCC
Q 039466 206 KDIEWLRSITN-LPILIKGV----LTREDAIKAVEVGVAGIIVSNHG 247 (263)
Q Consensus 206 ~dl~~lr~~~~-lPiilKGI----~s~eDA~~a~~~G~dgI~VSNHG 247 (263)
+-++.|++.++ +||-+=+= |...-+..|+++||+.|.+|=.|
T Consensus 182 ~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id~t~~G 228 (274)
T cd07938 182 RLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFDSSVGG 228 (274)
T ss_pred HHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccc
Confidence 45778888874 78776662 67788899999999999977664
No 465
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=66.81 E-value=1.1e+02 Score=30.32 Aligned_cols=113 Identities=17% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCceeecCCCCccHHHHHHhccc------cccCH-----HHHHHHHHHHHHcCCCEEEEccCCCCCcchHH
Q 039466 93 ATARAAASCNTIMVLSFTSSCSIEEVAASCNA------AYKKR-----DMAATLVQRAERNGFMALVLTADTPRLDRREA 161 (263)
Q Consensus 93 a~AraA~~~gi~~~lss~s~~sieeV~~~~~~------~~~d~-----~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~ 161 (263)
..+++|-++|..++.|-... .++++...... ++... +...+.+++++++|++.++ +| |..|.-..
T Consensus 219 ~v~eaAL~aGAdiINsVs~~-~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~II--lD-Pglg~~~~ 294 (499)
T TIGR00284 219 DELYEALKAGASGVIMPDVE-NAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVA--AD-PSLSPPLL 294 (499)
T ss_pred HHHHHHHHcCCCEEEECCcc-chhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEE--Ee-CCCCcchH
Q ss_pred HHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEec-------------CCHH
Q 039466 162 DIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGV-------------LTRE 228 (263)
Q Consensus 162 d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKGI-------------~s~e 228 (263)
.+-..+ +.++++|+..+.|+++ || .++-
T Consensus 295 ~l~~sL--------------------------------------~~l~~~r~~~~~Pil~-GvSNvtel~daDs~g~naa 335 (499)
T TIGR00284 295 GLLESI--------------------------------------IRFRRASRLLNVPLVF-GAANVTELVDADSHGVNAL 335 (499)
T ss_pred HHHHHH--------------------------------------HHHHHHHHhcCCcEEE-eeccccCCCccchhHHHHH
Q ss_pred HHHHHHHcCCCEEEEcCCCC
Q 039466 229 DAIKAVEVGVAGIIVSNHGA 248 (263)
Q Consensus 229 DA~~a~~~G~dgI~VSNHGG 248 (263)
=+..|.+.|++-|-|.+|..
T Consensus 336 l~~~a~e~Ga~ilrvhd~S~ 355 (499)
T TIGR00284 336 LAAIALEAGASILYVVEDSY 355 (499)
T ss_pred HHHHHHHcCCCEEEEcCCcc
No 466
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=66.74 E-value=44 Score=29.99 Aligned_cols=73 Identities=26% Similarity=0.329 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHH
Q 039466 128 KRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKD 207 (263)
Q Consensus 128 d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~d 207 (263)
|.+...+++++..+.|++.+++.--+--. ..++.+.
T Consensus 17 D~~~~~~~i~~l~~~Gv~Gi~~~GstGE~--------------------------------------------~~Ls~~E 52 (285)
T TIGR00674 17 DFAALEKLIDFQIENGTDAIVVVGTTGES--------------------------------------------PTLSHEE 52 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCccc--------------------------------------------ccCCHHH
Q ss_pred ----HHHHHhhcCCCE-EEEec------CCHHHHHHHHHcCCCEEEEc
Q 039466 208 ----IEWLRSITNLPI-LIKGV------LTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 208 ----l~~lr~~~~lPi-ilKGI------~s~eDA~~a~~~G~dgI~VS 244 (263)
++..++..+..+ |+=|| .+.+-|+.|.+.|+|||+|.
T Consensus 53 r~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~ 100 (285)
T TIGR00674 53 HKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVV 100 (285)
T ss_pred HHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEc
No 467
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=66.54 E-value=16 Score=32.88 Aligned_cols=41 Identities=22% Similarity=0.179 Sum_probs=33.8
Q ss_pred HHHHHHhhcC-CCEEEEecCCHHHHHHHHHcCCCEEEEcCCC
Q 039466 207 DIEWLRSITN-LPILIKGVLTREDAIKAVEVGVAGIIVSNHG 247 (263)
Q Consensus 207 dl~~lr~~~~-lPiilKGI~s~eDA~~a~~~G~dgI~VSNHG 247 (263)
.++.+|+..+ ...|.=.+-+.|++++|++.|+|.|.+.|-+
T Consensus 171 ~v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld~~~ 212 (268)
T cd01572 171 AVRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLDNMS 212 (268)
T ss_pred HHHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEECCcC
Confidence 5788888875 4456666899999999999999999998864
No 468
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=66.12 E-value=11 Score=32.07 Aligned_cols=40 Identities=18% Similarity=0.355 Sum_probs=27.2
Q ss_pred HHHHHHHhhcC-----CCEEEEecCCHHHHHHHHHcCCCEEEEcC
Q 039466 206 KDIEWLRSITN-----LPILIKGVLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 206 ~dl~~lr~~~~-----lPiilKGI~s~eDA~~a~~~G~dgI~VSN 245 (263)
+.++.+++.++ .+|.+=|=.+++++.++.+.|+|+|+|+.
T Consensus 155 ~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvgS 199 (220)
T PRK05581 155 EKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAGS 199 (220)
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 34555655544 23545453344999999999999999874
No 469
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=66.07 E-value=91 Score=28.35 Aligned_cols=115 Identities=18% Similarity=0.137 Sum_probs=0.0
Q ss_pred eeecccCCcc-cCCChhHH--------HHHHHHHHCCCceeecCCCCccHHHHHHhccccccCHHHHHHHHHHHHHcCCC
Q 039466 75 IIIAPTGLHK-LANPEGEV--------ATARAAASCNTIMVLSFTSSCSIEEVAASCNAAYKKRDMAATLVQRAERNGFM 145 (263)
Q Consensus 75 i~iaP~~~~~-l~~~~ge~--------a~AraA~~~gi~~~lss~s~~sieeV~~~~~~~~~d~~~~~~li~ra~~aG~~ 145 (263)
++++..+... ++.||++. .+.+.+....+|.++..-+.- |...+.+.+++.+++|+.
T Consensus 42 i~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg--------------~~~~v~r~V~~l~~aGva 107 (285)
T TIGR02320 42 IWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPIILDGDTGG--------------NFEHFRRLVRKLERRGVS 107 (285)
T ss_pred EEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCEEEecCCCC--------------CHHHHHHHHHHHHHcCCe
Q ss_pred EEEE--------------ccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHHHHHH
Q 039466 146 ALVL--------------TADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWL 211 (263)
Q Consensus 146 al~v--------------TvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~l 211 (263)
++.+ +.........+.-.+- .....-
T Consensus 108 Gi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI----------------------------------------~Aa~~a 147 (285)
T TIGR02320 108 AVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKI----------------------------------------RAGKDA 147 (285)
T ss_pred EEEEeccCCCccccccCCCCcccccCHHHHHHHH----------------------------------------HHHHHh
Q ss_pred HhhcCCCEEEE-----ecCCHHHH----HHHHHcCCCEEEE
Q 039466 212 RSITNLPILIK-----GVLTREDA----IKAVEVGVAGIIV 243 (263)
Q Consensus 212 r~~~~lPiilK-----GI~s~eDA----~~a~~~G~dgI~V 243 (263)
+...+++|+.. .....++| +.++++|||+|+|
T Consensus 148 ~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv 188 (285)
T TIGR02320 148 QTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMI 188 (285)
T ss_pred ccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEe
No 470
>PRK08508 biotin synthase; Provisional
Probab=65.83 E-value=32 Score=30.89 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=47.8
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCH-
Q 039466 127 KKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSW- 205 (263)
Q Consensus 127 ~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W- 205 (263)
.+++.+.+.++++++.|+..++++.+..... +..+.|
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~------------------------------------------~~~~e~~ 77 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLD------------------------------------------DKKLEYV 77 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCC------------------------------------------cccHHHH
Confidence 5667777778888888999988844422100 011111
Q ss_pred -HHHHHHHhhc-CCCE-EEEecCCHHHHHHHHHcCCCEEEE
Q 039466 206 -KDIEWLRSIT-NLPI-LIKGVLTREDAIKAVEVGVAGIIV 243 (263)
Q Consensus 206 -~dl~~lr~~~-~lPi-ilKGI~s~eDA~~a~~~G~dgI~V 243 (263)
+-++.|++.. ++.+ .--|.++.|..++..++|+|.+-+
T Consensus 78 ~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~ 118 (279)
T PRK08508 78 AEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNH 118 (279)
T ss_pred HHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcc
Confidence 2245666554 4444 355889999999999999998854
No 471
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=65.72 E-value=50 Score=27.78 Aligned_cols=103 Identities=10% Similarity=0.042 Sum_probs=59.1
Q ss_pred ChhHHHHHHHHHHCCCceeecCC-------CCccHHHHHHhccc--c-----ccCHHHHHHHHHHHHHcCCCEEEEccCC
Q 039466 88 PEGEVATARAAASCNTIMVLSFT-------SSCSIEEVAASCNA--A-----YKKRDMAATLVQRAERNGFMALVLTADT 153 (263)
Q Consensus 88 ~~ge~a~AraA~~~gi~~~lss~-------s~~sieeV~~~~~~--~-----~~d~~~~~~li~ra~~aG~~al~vTvD~ 153 (263)
++.-+.+++++ +.|+.. +--. +...++++++..++ + ..|.+. ..++++.++|++.+.++.-+
T Consensus 11 ~~~a~~~~~~l-~~~v~~-iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~--~~~~~~~~~Gad~i~vh~~~ 86 (206)
T TIGR03128 11 IEEALELAEKV-ADYVDI-IEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGE--YEAEQAFAAGADIVTVLGVA 86 (206)
T ss_pred HHHHHHHHHHc-ccCeeE-EEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchH--HHHHHHHHcCCCEEEEeccC
Confidence 34444677777 556543 2221 12346677776553 1 225442 24677888998888877654
Q ss_pred CCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCH-HHHHHHHhhcCCCEEEEecCC----HH
Q 039466 154 PRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSW-KDIEWLRSITNLPILIKGVLT----RE 228 (263)
Q Consensus 154 ~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W-~dl~~lr~~~~lPiilKGI~s----~e 228 (263)
+. .+- +-++++++ .++|+++ ++.+ .+
T Consensus 87 ~~-----------------------------------------------~~~~~~i~~~~~-~g~~~~~-~~~~~~t~~~ 117 (206)
T TIGR03128 87 DD-----------------------------------------------ATIKGAVKAAKK-HGKEVQV-DLINVKDKVK 117 (206)
T ss_pred CH-----------------------------------------------HHHHHHHHHHHH-cCCEEEE-EecCCCChHH
Confidence 21 000 12334443 5788877 3333 37
Q ss_pred HHHHHHHcCCCEEEE
Q 039466 229 DAIKAVEVGVAGIIV 243 (263)
Q Consensus 229 DA~~a~~~G~dgI~V 243 (263)
+++.+.+.|+|.|-|
T Consensus 118 ~~~~~~~~g~d~v~~ 132 (206)
T TIGR03128 118 RAKELKELGADYIGV 132 (206)
T ss_pred HHHHHHHcCCCEEEE
Confidence 888888999997766
No 472
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=65.67 E-value=18 Score=32.83 Aligned_cols=51 Identities=20% Similarity=0.158 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHhhcC--CCEEEEecCCHHHHHHHHHcCCCEEEEcC--CCCCCCC
Q 039466 202 SLSWKDIEWLRSITN--LPILIKGVLTREDAIKAVEVGVAGIIVSN--HGARQLD 252 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~--lPiilKGI~s~eDA~~a~~~G~dgI~VSN--HGGRqlD 252 (263)
.++-+.++++++..+ +|++.=|=.+++.+....+.|+|+|.||- |..+-+|
T Consensus 216 ~~~~e~l~~~~~~~~~~i~i~AiGGIt~~ni~~~a~~Gvd~IAvg~l~~sa~~~D 270 (277)
T PRK08072 216 NRTPDEIREFVKLVPSAIVTEASGGITLENLPAYGGTGVDYISLGFLTHSVKALD 270 (277)
T ss_pred CCCHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhcCCcccc
Confidence 477799999999876 45556664699999999999999999984 4444444
No 473
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=65.53 E-value=43 Score=30.08 Aligned_cols=79 Identities=15% Similarity=0.088 Sum_probs=50.6
Q ss_pred cceeecccCCcccCCChhHHHHHHHHHHCCCcee--ecCCC---CccHHH-------HHHhccc-------cc-cCHHHH
Q 039466 73 ASIIIAPTGLHKLANPEGEVATARAAASCNTIMV--LSFTS---SCSIEE-------VAASCNA-------AY-KKRDMA 132 (263)
Q Consensus 73 ~Pi~iaP~~~~~l~~~~ge~a~AraA~~~gi~~~--lss~s---~~siee-------V~~~~~~-------~~-~d~~~~ 132 (263)
.|.++.|+.-.+-.+.++-..+.+-..+.|+--+ .||.+ ..|.+| +.+..++ +. .+-+.+
T Consensus 6 ~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~ 85 (292)
T PRK03170 6 ITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEA 85 (292)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHH
Confidence 4667777765555555666677888777776433 44433 345554 2333332 22 355677
Q ss_pred HHHHHHHHHcCCCEEEEcc
Q 039466 133 ATLVQRAERNGFMALVLTA 151 (263)
Q Consensus 133 ~~li~ra~~aG~~al~vTv 151 (263)
.++++.|+++|++++++..
T Consensus 86 i~~a~~a~~~G~d~v~~~p 104 (292)
T PRK03170 86 IELTKFAEKAGADGALVVT 104 (292)
T ss_pred HHHHHHHHHcCCCEEEECC
Confidence 8889999999999999864
No 474
>PRK14057 epimerase; Provisional
Probab=65.34 E-value=42 Score=30.12 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=30.6
Q ss_pred CHHHHHHHHhhc---C--CCEEEEecCCHHHHHHHHHcCCCEEEEc
Q 039466 204 SWKDIEWLRSIT---N--LPILIKGVLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 204 ~W~dl~~lr~~~---~--lPiilKGI~s~eDA~~a~~~G~dgI~VS 244 (263)
..+.|+++|+.. + .-|-+=|=.+.+.+.+++++|||.+|+.
T Consensus 176 ~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~G 221 (254)
T PRK14057 176 LHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSG 221 (254)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEC
Confidence 345666666543 2 4588888889999999999999966654
No 475
>PLN02417 dihydrodipicolinate synthase
Probab=65.18 E-value=48 Score=29.77 Aligned_cols=74 Identities=19% Similarity=0.205 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhcCCCCCHHH
Q 039466 128 KRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETMDPSLSWKD 207 (263)
Q Consensus 128 d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~d 207 (263)
|.+...++++...+.|++.|++---+--. ..+++++
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~~GstGE~--------------------------------------------~~ls~~E 55 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIVGGTTGEG--------------------------------------------QLMSWDE 55 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcch--------------------------------------------hhCCHHH
Q ss_pred ----HHHHHhhcCCCE-EEEec------CCHHHHHHHHHcCCCEEEEcC
Q 039466 208 ----IEWLRSITNLPI-LIKGV------LTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 208 ----l~~lr~~~~lPi-ilKGI------~s~eDA~~a~~~G~dgI~VSN 245 (263)
+++.++..+.-+ |+=|| .+.+-|+.|.++|+|+|+|..
T Consensus 56 r~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~ 104 (280)
T PLN02417 56 HIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 104 (280)
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcC
No 476
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=65.07 E-value=19 Score=32.65 Aligned_cols=40 Identities=23% Similarity=0.175 Sum_probs=32.2
Q ss_pred HHHHHHHHhhcC--CCEEEEecCCHHHHHHHHHcCCCEEEEcC
Q 039466 205 WKDIEWLRSITN--LPILIKGVLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 205 W~dl~~lr~~~~--lPiilKGI~s~eDA~~a~~~G~dgI~VSN 245 (263)
.+.++.+|+..+ .+|.+ .|-+.|+|+.|+++|+|.|.+=|
T Consensus 169 ~~~v~~~k~~~p~~~~I~V-Ev~tleea~~A~~~GaDiI~LDn 210 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEI-ECESLEEAKNAMNAGADIVMCDN 210 (273)
T ss_pred HHHHHHHHHhCCCCceEEE-EeCCHHHHHHHHHcCCCEEEECC
Confidence 456888988876 34444 89999999999999999997544
No 477
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=64.95 E-value=1.3e+02 Score=28.94 Aligned_cols=61 Identities=16% Similarity=0.051 Sum_probs=35.3
Q ss_pred HHHHHHHHCCCcee-----ecCCCCccHHHHHH--------hcc--c--------cccCHHHHHHHHHHHHHcCCCEEEE
Q 039466 93 ATARAAASCNTIMV-----LSFTSSCSIEEVAA--------SCN--A--------AYKKRDMAATLVQRAERNGFMALVL 149 (263)
Q Consensus 93 a~AraA~~~gi~~~-----lss~s~~sieeV~~--------~~~--~--------~~~d~~~~~~li~ra~~aG~~al~v 149 (263)
.++..+..-|+-++ +.++.-++++|=.. +.. | +-.+.+.+.+..+.++++|+.++++
T Consensus 154 ~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~~~em~~ra~~a~~~G~~~~m~ 233 (407)
T PRK09549 154 EQLRDQALGGVDLVKDDEILFENALTPFEKRIVAGKEVLQEVYETTGHKTLYAVNLTGRTFELKEKAKRAAEAGADALLF 233 (407)
T ss_pred HHHHHHHhcCCcceecCcCCCCCCCcCHHHHHHHHHHHHHHHHHhhCCcceEEEecCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 56666777777664 55566677776211 110 1 2334444555556666788887777
Q ss_pred ccCC
Q 039466 150 TADT 153 (263)
Q Consensus 150 TvD~ 153 (263)
.+.+
T Consensus 234 ~~~~ 237 (407)
T PRK09549 234 NVFA 237 (407)
T ss_pred eccc
Confidence 6654
No 478
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=64.81 E-value=52 Score=29.03 Aligned_cols=40 Identities=30% Similarity=0.421 Sum_probs=34.3
Q ss_pred HHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEEcCC
Q 039466 206 KDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 206 ~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~VSNH 246 (263)
+-++.+++.+++||-+-+| .|+.-..|+++|+|=|=+.|-
T Consensus 51 ~LV~~~~~~s~lPICVSaV-ep~~f~~aV~AGAdliEIGNf 90 (242)
T PF04481_consen 51 ELVKLAKSLSNLPICVSAV-EPELFVAAVKAGADLIEIGNF 90 (242)
T ss_pred HHHHHHHHhCCCCeEeecC-CHHHHHHHHHhCCCEEEecch
Confidence 4567788899999999987 577888899999999999984
No 479
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=64.66 E-value=9.8 Score=32.83 Aligned_cols=41 Identities=17% Similarity=0.447 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHhhcCCCEEEEecCCHHHHHHHHH--cCCCEEEEcC
Q 039466 202 SLSWKDIEWLRSITNLPILIKGVLTREDAIKAVE--VGVAGIIVSN 245 (263)
Q Consensus 202 ~~~W~dl~~lr~~~~lPiilKGI~s~eDA~~a~~--~G~dgI~VSN 245 (263)
.++|+.++.+ .+.|+++=|=+++|....|++ .+..||+||.
T Consensus 141 ~~dw~~~~~~---~~~p~iLAGGL~peNV~~a~~~~~~p~gVDvsS 183 (207)
T PRK13958 141 TYDWTILKHI---KDIPYLIAGGINSENIQTVEQLKLSHQGYDIAS 183 (207)
T ss_pred EeChHHhhhc---cCCCEEEECCCCHHHHHHHHhcCCCCCEEEccc
Confidence 5789988766 356999999999999988875 5889999974
No 480
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=64.54 E-value=11 Score=34.80 Aligned_cols=42 Identities=19% Similarity=0.477 Sum_probs=35.5
Q ss_pred CCHHHHHHHHhhcC--CCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 203 LSWKDIEWLRSITN--LPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 203 ~~W~dl~~lr~~~~--lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
.+-+-|.++.+..+ +||.+-| |.+..|..+|+.+|+.+|.|.
T Consensus 263 AtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiG 307 (363)
T KOG0538|consen 263 ATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIG 307 (363)
T ss_pred chHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEec
Confidence 35667777777654 8999998 999999999999999999883
No 481
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=64.43 E-value=6.9 Score=32.01 Aligned_cols=56 Identities=27% Similarity=0.297 Sum_probs=44.6
Q ss_pred HHHHHHhhcCCCEEEEec-CCHHHHHHHH-HcCCCEEEEcCCCCCCCCCchhhhcccc
Q 039466 207 DIEWLRSITNLPILIKGV-LTREDAIKAV-EVGVAGIIVSNHGARQLDYTPATISALE 262 (263)
Q Consensus 207 dl~~lr~~~~lPiilKGI-~s~eDA~~a~-~~G~dgI~VSNHGGRqlD~~~~~i~~Lp 262 (263)
-+..+-+..+.-+|-=|. .++|++..++ +..++.|.||..-|.-++-+|.-++.|-
T Consensus 31 via~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lr 88 (143)
T COG2185 31 VIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALR 88 (143)
T ss_pred HHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHH
Confidence 345555566778888884 7999988776 8999999999999999888888777663
No 482
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=64.41 E-value=51 Score=28.96 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcCC----CEEEEecCCHHHHHHHHHcCCCEEEEc
Q 039466 205 WKDIEWLRSITNL----PILIKGVLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 205 W~dl~~lr~~~~l----PiilKGI~s~eDA~~a~~~G~dgI~VS 244 (263)
-+.|+.+|+..+- -|-+=|=.+.+.+.++.++|+|-+|..
T Consensus 154 l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaG 197 (220)
T COG0036 154 LEKIRELRAMIDERLDILIEVDGGINLETIKQLAAAGADVFVAG 197 (220)
T ss_pred HHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHHHHcCCCEEEEE
Confidence 4667777776552 355666689999999999999976654
No 483
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=64.17 E-value=53 Score=29.49 Aligned_cols=23 Identities=26% Similarity=0.169 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEc
Q 039466 128 KRDMAATLVQRAERNGFMALVLT 150 (263)
Q Consensus 128 d~~~~~~li~ra~~aG~~al~vT 150 (263)
|.+..+++++...+.|++.+++.
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~~ 42 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVVV 42 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC
Confidence 66778899999999999998864
No 484
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=63.86 E-value=26 Score=32.59 Aligned_cols=41 Identities=27% Similarity=0.276 Sum_probs=29.7
Q ss_pred HHHHHHHHhhcCCCEEEEec--------CCHHHHH----HHHHcCCCEEEEcC
Q 039466 205 WKDIEWLRSITNLPILIKGV--------LTREDAI----KAVEVGVAGIIVSN 245 (263)
Q Consensus 205 W~dl~~lr~~~~lPiilKGI--------~s~eDA~----~a~~~G~dgI~VSN 245 (263)
-+-|+.||+.++.||.+|=- .+.+|+. .+.+.|+|.|-||.
T Consensus 196 ~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~ 248 (337)
T PRK13523 196 REIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSS 248 (337)
T ss_pred HHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 35688899998889888721 3667664 33457999999964
No 485
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=63.53 E-value=8.7 Score=22.82 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHcCCCEEE
Q 039466 225 LTREDAIKAVEVGVAGII 242 (263)
Q Consensus 225 ~s~eDA~~a~~~G~dgI~ 242 (263)
-..+.-+.++++|||||+
T Consensus 8 d~~~~~~~~l~~GVDgI~ 25 (30)
T PF13653_consen 8 DKPASWRELLDLGVDGIM 25 (30)
T ss_dssp -SHHHHHHHHHHT-SEEE
T ss_pred CCHHHHHHHHHcCCCEee
Confidence 346777899999999995
No 486
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=63.52 E-value=15 Score=36.36 Aligned_cols=42 Identities=19% Similarity=0.432 Sum_probs=36.8
Q ss_pred HHHHHHHHhhcCCCEEEE------e---cCCHHHHHHHHH-cCCCEEEEcCC
Q 039466 205 WKDIEWLRSITNLPILIK------G---VLTREDAIKAVE-VGVAGIIVSNH 246 (263)
Q Consensus 205 W~dl~~lr~~~~lPiilK------G---I~s~eDA~~a~~-~G~dgI~VSNH 246 (263)
|+-|+.+++.|+.|+++. | |.||+||.++.. .|+|+.++-|+
T Consensus 498 ~~ll~aF~~~TG~gvllNTSFN~~GEPIVcsp~DA~~~f~~t~~d~Lvi~~~ 549 (555)
T COG2192 498 YGLLRAFKERTGVGVLLNTSFNVHGEPIVCSPADAIRTFLSTGLDALVLEDF 549 (555)
T ss_pred HHHHHHHHHhcCCcEEEecccccCCCceecCHHHHHHHHHhCCCcEEEEcCE
Confidence 567999999999999986 3 589999999986 79999999874
No 487
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=63.44 E-value=45 Score=29.71 Aligned_cols=42 Identities=19% Similarity=0.151 Sum_probs=29.4
Q ss_pred HHHHHHhhcCCCEEEE---------ecCCHHH----HHHHHHcCCCEEEEcCCCC
Q 039466 207 DIEWLRSITNLPILIK---------GVLTRED----AIKAVEVGVAGIIVSNHGA 248 (263)
Q Consensus 207 dl~~lr~~~~lPiilK---------GI~s~eD----A~~a~~~G~dgI~VSNHGG 248 (263)
.+.++...+++|+++- +-.+++. ++.|.+.|+|.|=.|-+|+
T Consensus 130 ~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~~~ 184 (267)
T PRK07226 130 EVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYTGD 184 (267)
T ss_pred HHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCCCC
Confidence 4445556688998873 1234444 7888899999999987763
No 488
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=63.43 E-value=78 Score=31.95 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=32.9
Q ss_pred HHHHHHHhhcCCCEEEEec----CCHHHHHHHHHcCCCEEEEcCCC
Q 039466 206 KDIEWLRSITNLPILIKGV----LTREDAIKAVEVGVAGIIVSNHG 247 (263)
Q Consensus 206 ~dl~~lr~~~~lPiilKGI----~s~eDA~~a~~~G~dgI~VSNHG 247 (263)
+-++.||+..++||-+=.= +...-+..|+++|||.|.+|=.|
T Consensus 187 ~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAieaGad~iD~ai~g 232 (596)
T PRK14042 187 ELYAGLKQATGLPVHLHSHSTSGLASICHYEAVLAGCNHIDTAISS 232 (596)
T ss_pred HHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHHhCCCEEEecccc
Confidence 4578888888888866552 66778889999999999977554
No 489
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=63.40 E-value=46 Score=32.18 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=31.9
Q ss_pred HHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEEEE
Q 039466 205 WKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGIIV 243 (263)
Q Consensus 205 W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI~V 243 (263)
|+.+++|++.+++||..=+ +.+++|++.+++.|+--|+.
T Consensus 268 ~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~ 307 (441)
T TIGR03247 268 REVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPL 307 (441)
T ss_pred HHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEe
Confidence 7789999999999999866 67899999999876544443
No 490
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=62.99 E-value=28 Score=32.16 Aligned_cols=43 Identities=30% Similarity=0.346 Sum_probs=31.2
Q ss_pred CCHHHHHHHHhhcC--CCEEEEec--------CCHHHHHH----HHHcCCCEEEEcC
Q 039466 203 LSWKDIEWLRSITN--LPILIKGV--------LTREDAIK----AVEVGVAGIIVSN 245 (263)
Q Consensus 203 ~~W~dl~~lr~~~~--lPiilKGI--------~s~eDA~~----a~~~G~dgI~VSN 245 (263)
+..+-|+.||+..+ .||.+|=- .+.+|+.. +.++|+|.|-||.
T Consensus 201 f~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~ 257 (338)
T cd04733 201 LLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSG 257 (338)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecC
Confidence 45577999999884 78998842 57777643 3467999998863
No 491
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=62.79 E-value=8 Score=34.68 Aligned_cols=23 Identities=43% Similarity=0.469 Sum_probs=21.1
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCC
Q 039466 227 REDAIKAVEVGVAGIIVSNHGAR 249 (263)
Q Consensus 227 ~eDA~~a~~~G~dgI~VSNHGGR 249 (263)
.+||+...+.|+|||+|.|.|..
T Consensus 32 ~~ea~~l~~~GvDgiiveN~~D~ 54 (254)
T PF03437_consen 32 VREAEALEEGGVDGIIVENMGDV 54 (254)
T ss_pred HHHHHHHHHCCCCEEEEecCCCC
Confidence 57999999999999999998875
No 492
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=62.62 E-value=18 Score=29.60 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=31.6
Q ss_pred HHHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEE
Q 039466 206 KDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGII 242 (263)
Q Consensus 206 ~dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~ 242 (263)
+-++.+++ .++++.+=.|-++++.+.+.+.|||||+
T Consensus 151 ~~i~~~~~-~g~~v~~wtvn~~~~~~~~~~~GVdgI~ 186 (189)
T cd08556 151 ELVRAAHA-AGLKVYVWTVNDPEDARRLLALGVDGII 186 (189)
T ss_pred HHHHHHHH-cCCEEEEEcCCCHHHHHHHHHCCCCEEe
Confidence 34677766 5999999999999999999999999996
No 493
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=62.61 E-value=15 Score=33.76 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=38.1
Q ss_pred CCHHHHHHHHhhcCCCEEEEe-cCCHHHHHHHHHcCCCEE---EEcCCCC
Q 039466 203 LSWKDIEWLRSITNLPILIKG-VLTREDAIKAVEVGVAGI---IVSNHGA 248 (263)
Q Consensus 203 ~~W~dl~~lr~~~~lPiilKG-I~s~eDA~~a~~~G~dgI---~VSNHGG 248 (263)
-+|+.+++|++.+++||.+=+ +.+..|.+.+++.|+..| .++-.||
T Consensus 204 ~~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GG 253 (320)
T PRK02714 204 DQFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGS 253 (320)
T ss_pred ccHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCC
Confidence 378899999999999999988 789999999999866553 3556676
No 494
>PRK07094 biotin synthase; Provisional
Probab=62.57 E-value=44 Score=30.42 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=25.1
Q ss_pred HHHHHhhcCCCEEEE-ecCCHHHHHHHHHcCCCEEEEc
Q 039466 208 IEWLRSITNLPILIK-GVLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 208 l~~lr~~~~lPiilK-GI~s~eDA~~a~~~G~dgI~VS 244 (263)
++.|++..++++-+. |..+.|++++..++|++.+.++
T Consensus 109 ~~~i~~~~~l~i~~~~g~~~~e~l~~Lk~aG~~~v~~g 146 (323)
T PRK07094 109 IKEIKKELDVAITLSLGERSYEEYKAWKEAGADRYLLR 146 (323)
T ss_pred HHHHHccCCceEEEecCCCCHHHHHHHHHcCCCEEEec
Confidence 445555445554332 5678899999999999988754
No 495
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=62.55 E-value=21 Score=32.43 Aligned_cols=44 Identities=9% Similarity=0.057 Sum_probs=33.4
Q ss_pred HHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEEcCCCCCC
Q 039466 207 DIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNHGARQ 250 (263)
Q Consensus 207 dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~VSNHGGRq 250 (263)
.++.+|+..+-..|.=.+-+.|++++|++.|+|.|.+.|-|=.+
T Consensus 179 av~~~r~~~~~~~I~VEv~tleea~eA~~~gaD~I~LD~~~~e~ 222 (277)
T PRK05742 179 AVAAAHRIAPGKPVEVEVESLDELRQALAAGADIVMLDELSLDD 222 (277)
T ss_pred HHHHHHHhCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCHHH
Confidence 36777776543446666899999999999999999887765433
No 496
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=62.48 E-value=16 Score=31.44 Aligned_cols=36 Identities=31% Similarity=0.451 Sum_probs=30.2
Q ss_pred HHHHHHhhcCCCEEEEecCCHHHHHHHHHcCCCEEEE
Q 039466 207 DIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIV 243 (263)
Q Consensus 207 dl~~lr~~~~lPiilKGI~s~eDA~~a~~~G~dgI~V 243 (263)
-++++++. ++++.+=.|-+++++.++++.|||||+.
T Consensus 192 ~i~~~~~~-g~~v~~Wtvn~~~~~~~~~~~GVdgi~T 227 (230)
T cd08563 192 VVEELKKR-GIPVRLWTVNEEEDMKRLKDLGVDGIIT 227 (230)
T ss_pred HHHHHHHC-CCEEEEEecCCHHHHHHHHHCCCCEEeC
Confidence 35555544 8999999999999999999999999963
No 497
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=61.85 E-value=99 Score=29.34 Aligned_cols=94 Identities=14% Similarity=0.256 Sum_probs=64.6
Q ss_pred cccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhhhhhhhccccCCCCCCCccHHHHHHHhc-CCCC
Q 039466 125 AYKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQLKNLEGLLSTKVTSDTGSNLEAYAKETM-DPSL 203 (263)
Q Consensus 125 ~~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 203 (263)
...|++...+.++.+.+.|..-+.++.|.-+ ++.++.. +. ...+. .+ ...=
T Consensus 141 ~Sgdpekfa~ave~v~~~~~pv~l~s~dpev-------mkaaLev-----~~-----dqkPl-----------lYaAte~ 192 (467)
T COG1456 141 RSGDPEKFAEAVEKVAEAGLPVILCSFDPEV-------MKAALEV-----VK-----DQKPL-----------LYAATED 192 (467)
T ss_pred cCCCHHHHHHHHHHHHhcCCcEEEEeCCHHH-------HHHHHHH-----hh-----ccCce-----------eeecccc
Confidence 3568899999999999999988999999543 2221110 00 00000 01 1223
Q ss_pred CHHHHHHHHhhcCCCEEEEecCCHHH----HHHHHHcCCCEEEEcCC
Q 039466 204 SWKDIEWLRSITNLPILIKGVLTRED----AIKAVEVGVAGIIVSNH 246 (263)
Q Consensus 204 ~W~dl~~lr~~~~lPiilKGI~s~eD----A~~a~~~G~dgI~VSNH 246 (263)
+|.++..|.-..+.|+++.---..+| |+++.++|++-|++--|
T Consensus 193 n~~e~~klav~y~vplvl~a~~dl~~lk~la~~~~~~Gi~divLdPg 239 (467)
T COG1456 193 NWKEFAKLAVEYKVPLVLSAFNDLDDLKNLAVTYAQAGIKDIVLDPG 239 (467)
T ss_pred cHHHHHHHHhhcCCcEEEeccCCHHHHHHHHHHHHHcCCceEEecCC
Confidence 89999999999999999987666666 56777899999987544
No 498
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=61.43 E-value=70 Score=29.76 Aligned_cols=101 Identities=19% Similarity=0.176 Sum_probs=59.5
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEccCCCCCcchHHHHhhhhhhhhh-h-hhhhccccCCCCCCCccHHHHHHHhcCCCC
Q 039466 126 YKKRDMAATLVQRAERNGFMALVLTADTPRLDRREADIKNKMIAQQL-K-NLEGLLSTKVTSDTGSNLEAYAKETMDPSL 203 (263)
Q Consensus 126 ~~d~~~~~~li~ra~~aG~~al~vTvD~~~~g~R~~d~r~~~~~p~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (263)
..|-+..+++|+.|+++|++++=+-.-. ..++- .+.. . .+.. .+ .. ......+.+.. -.+
T Consensus 12 ~Gdl~~A~~lI~~A~~aGadaVKfQt~~------~~~~~----~~~~~~~~~~~---~~-~~-~~~~~~~~~~~---~~l 73 (329)
T TIGR03569 12 NGSLELAKKLVDAAAEAGADAVKFQTFK------AEDLV----SKNAPKAEYQK---IN-TG-AEESQLEMLKK---LEL 73 (329)
T ss_pred cCcHHHHHHHHHHHHHhCCCEEEeeeCC------HHHhh----Ccccccccccc---cC-Cc-CCCcHHHHHHH---hCC
Confidence 4678889999999999999987654321 11111 0000 0 0000 00 00 01112222222 336
Q ss_pred CHHHHHHHH---hhcCCCEEEEecCCHHHHHHHHHcCCCEEEEcC
Q 039466 204 SWKDIEWLR---SITNLPILIKGVLTREDAIKAVEVGVAGIIVSN 245 (263)
Q Consensus 204 ~W~dl~~lr---~~~~lPiilKGI~s~eDA~~a~~~G~dgI~VSN 245 (263)
+|+.+++|. +..+++++-- +++.+++..+.++|++.+-|+.
T Consensus 74 ~~e~~~~L~~~~~~~Gi~~~st-pfd~~svd~l~~~~v~~~KIaS 117 (329)
T TIGR03569 74 SEEDHRELKEYCESKGIEFLST-PFDLESADFLEDLGVPRFKIPS 117 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEE-eCCHHHHHHHHhcCCCEEEECc
Confidence 666655555 5678887764 8999999999999999988764
No 499
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=61.35 E-value=8.1 Score=36.40 Aligned_cols=41 Identities=12% Similarity=0.268 Sum_probs=36.1
Q ss_pred CHHHHHHHHhhcC--CCEEEEe-cCCHHHHHHHHHcCCCEEEEc
Q 039466 204 SWKDIEWLRSITN--LPILIKG-VLTREDAIKAVEVGVAGIIVS 244 (263)
Q Consensus 204 ~W~dl~~lr~~~~--lPiilKG-I~s~eDA~~a~~~G~dgI~VS 244 (263)
+-+-|.++++..+ +||++-| |.+..|+.+|+..||+++.++
T Consensus 259 t~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~ig 302 (360)
T COG1304 259 TADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIG 302 (360)
T ss_pred hHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhh
Confidence 3367999999888 8999998 999999999999999988663
No 500
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=61.08 E-value=96 Score=30.37 Aligned_cols=197 Identities=14% Similarity=0.178 Sum_probs=97.4
Q ss_pred CChHHHHHHHHHhCCcccccccc--CCccchHHHH-HHHHhccccceeccccccccccccccccCCcccccceeecccCC
Q 039466 6 VNLNAFQELARLALPKMYYDFYA--GGVENQYTLK-ENMEAFHGITFWPRILVDVCRIDISTSTLDYKISASIIIAPTGL 82 (263)
Q Consensus 6 ~~~~d~~~~A~~~l~~~~~~y~~--~ga~~e~t~~-~N~~af~~~~l~pr~L~~v~~~d~st~~lG~~~~~Pi~iaP~~~ 82 (263)
++.+|+...|.. |.+.-|..++ |||.=...++ .|...|++++..-+.+++. -+..-+-|+.+ +|.
T Consensus 32 ~~t~d~l~ia~~-ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt---~lqmLlRG~n~--------vgy 99 (468)
T PRK12581 32 LSIEDMLPVLTI-LDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNT---RLQMLLRGQNL--------LGY 99 (468)
T ss_pred CCHHHHHHHHHH-HHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCC---ceeeeeccccc--------cCc
Confidence 567787777754 3344444454 4444343343 4455788887666666542 12222223321 222
Q ss_pred cccCCC-hhHHHHHHHHHHCCCceeecCCCCccHHHHHHhccccccCHHHHHHHHHHHHHcCCCE---EEEccCCCCCcc
Q 039466 83 HKLANP-EGEVATARAAASCNTIMVLSFTSSCSIEEVAASCNAAYKKRDMAATLVQRAERNGFMA---LVLTADTPRLDR 158 (263)
Q Consensus 83 ~~l~~~-~ge~a~AraA~~~gi~~~lss~s~~sieeV~~~~~~~~~d~~~~~~li~ra~~aG~~a---l~vTvD~~~~g~ 158 (263)
.. +| +--....+.|.+.|+-.+--.-+ +.|.+.++..++.+++.|..+ ++.|.+ |..
T Consensus 100 ~~--ypddvv~~fv~~a~~~Gidi~Rifd~--------------lnd~~n~~~ai~~ak~~G~~~~~~i~yt~s-p~~-- 160 (468)
T PRK12581 100 RH--YADDIVDKFISLSAQNGIDVFRIFDA--------------LNDPRNIQQALRAVKKTGKEAQLCIAYTTS-PVH-- 160 (468)
T ss_pred cC--CcchHHHHHHHHHHHCCCCEEEEccc--------------CCCHHHHHHHHHHHHHcCCEEEEEEEEEeC-CcC--
Confidence 11 23 33446788889988866532211 345555666666666666542 333333 211
Q ss_pred hHHHHhhhhhhhhhhhhhhc--cccCCCCCCCccHHHHHHHhcCCCCCHHHHHHHHhhcCCCEEEEec----CCHHHHHH
Q 039466 159 READIKNKMIAQQLKNLEGL--LSTKVTSDTGSNLEAYAKETMDPSLSWKDIEWLRSITNLPILIKGV----LTREDAIK 232 (263)
Q Consensus 159 R~~d~r~~~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~W~dl~~lr~~~~lPiilKGI----~s~eDA~~ 232 (263)
++..-..+. +.+... ..-.+.+.. + ...|.-.-+-++.|++..++||-+=.= +...-+..
T Consensus 161 ---t~~y~~~~a--~~l~~~Gad~I~IkDta--G-------~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~la 226 (468)
T PRK12581 161 ---TLNYYLSLV--KELVEMGADSICIKDMA--G-------ILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLA 226 (468)
T ss_pred ---cHHHHHHHH--HHHHHcCCCEEEECCCC--C-------CcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHH
Confidence 000000000 000000 000000000 0 001111224467788777888865552 67888899
Q ss_pred HHHcCCCEEEEcCCC
Q 039466 233 AVEVGVAGIIVSNHG 247 (263)
Q Consensus 233 a~~~G~dgI~VSNHG 247 (263)
|+++||+.|.+|=.|
T Consensus 227 AieAGad~vD~ai~g 241 (468)
T PRK12581 227 AVEAGADRIDTALSP 241 (468)
T ss_pred HHHcCCCEEEeeccc
Confidence 999999999987654
Done!