Query 039467
Match_columns 687
No_of_seqs 160 out of 228
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 09:57:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039467.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039467hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04097 Nic96: Nup93/Nic96; 100.0 4E-121 8E-126 1052.1 40.3 552 89-676 2-613 (613)
2 KOG2168 Cullins [Cell cycle co 100.0 6E-119 1E-123 1013.8 53.7 627 1-686 136-830 (835)
3 PF04121 Nup84_Nup100: Nuclear 97.0 0.035 7.5E-07 66.5 20.0 188 210-411 136-364 (697)
4 KOG1964 Nuclear pore complex, 93.9 0.1 2.2E-06 60.8 6.3 106 210-322 223-333 (800)
5 PF07575 Nucleopor_Nup85: Nup8 90.1 1.3 2.9E-05 51.8 9.7 326 210-607 151-521 (566)
6 KOG3617 WD40 and TPR repeat-co 59.8 32 0.0007 41.7 8.2 75 445-533 1050-1134(1416)
7 smart00299 CLH Clathrin heavy 53.3 19 0.00041 33.5 4.3 37 490-526 73-109 (140)
8 PF12569 NARP1: NMDA receptor- 51.9 46 0.001 38.8 7.9 76 150-234 127-221 (517)
9 KOG2168 Cullins [Cell cycle co 49.1 38 0.00081 41.2 6.7 102 580-681 709-833 (835)
10 PF04212 MIT: MIT (microtubule 48.3 22 0.00049 29.3 3.5 35 489-529 8-42 (69)
11 KOG1920 IkappaB kinase complex 44.1 1.7E+02 0.0037 37.1 11.2 44 206-249 676-728 (1265)
12 KOG0276 Vesicle coat complex C 44.0 28 0.00061 40.7 4.4 146 368-524 591-746 (794)
13 cd02681 MIT_calpain7_1 MIT: do 39.3 35 0.00075 29.3 3.3 27 489-515 9-35 (76)
14 PF12110 Nup96: Nuclear protei 38.9 43 0.00093 35.8 4.8 48 486-533 209-256 (290)
15 PF10083 DUF2321: Uncharacteri 35.5 2E+02 0.0043 28.2 8.1 77 86-162 75-151 (158)
16 cd02682 MIT_AAA_Arch MIT: doma 35.0 46 0.00099 28.6 3.3 26 489-514 9-34 (75)
17 KOG3617 WD40 and TPR repeat-co 33.4 44 0.00095 40.6 3.9 35 489-523 1024-1059(1416)
18 PF05044 HPD: Homeo-prospero d 33.0 82 0.0018 30.3 5.0 25 280-311 125-150 (158)
19 KOG1839 Uncharacterized protei 32.5 38 0.00082 42.9 3.4 77 342-420 646-741 (1236)
20 PF07720 TPR_3: Tetratricopept 30.8 83 0.0018 23.0 3.7 28 489-516 4-33 (36)
21 PF09295 ChAPs: ChAPs (Chs5p-A 28.6 1.9E+02 0.0041 32.6 7.9 34 591-624 278-311 (395)
22 KOG0275 Conserved WD40 repeat- 28.0 2.3E+02 0.005 31.0 7.8 33 655-687 136-168 (508)
23 PLN03077 Protein ECB2; Provisi 27.9 1.2E+03 0.026 28.6 23.6 39 212-250 227-267 (857)
24 PF00637 Clathrin: Region in C 27.5 20 0.00043 33.4 -0.1 31 491-521 75-105 (143)
25 PF04053 Coatomer_WDAD: Coatom 27.2 1.6E+02 0.0035 33.6 7.1 37 488-524 391-427 (443)
26 cd02656 MIT MIT: domain contai 24.0 92 0.002 26.0 3.4 32 489-526 9-40 (75)
27 cd02683 MIT_1 MIT: domain cont 23.7 87 0.0019 26.8 3.2 24 489-512 9-32 (77)
28 smart00685 DM14 Repeats in fly 23.4 2.6E+02 0.0057 22.9 5.7 38 485-522 7-44 (59)
29 smart00667 LisH Lissencephaly 22.5 78 0.0017 21.4 2.3 22 212-233 9-30 (34)
30 PLN03218 maturation of RBCL 1; 22.2 4.5E+02 0.0097 33.6 10.2 40 211-250 723-768 (1060)
31 PF06957 COPI_C: Coatomer (COP 22.0 90 0.0019 35.4 3.7 31 584-614 207-238 (422)
32 PF05534 HicB: HicB family; I 21.1 48 0.001 26.2 1.0 19 667-685 16-34 (51)
33 PF14938 SNAP: Soluble NSF att 20.4 3.1E+02 0.0068 28.8 7.4 121 480-608 108-264 (282)
34 PF13812 PPR_3: Pentatricopept 20.1 1.4E+02 0.003 20.0 3.1 22 212-233 6-27 (34)
35 PF12854 PPR_1: PPR repeat 20.1 1.4E+02 0.003 21.1 3.1 23 210-232 9-32 (34)
36 smart00745 MIT Microtubule Int 20.0 1.2E+02 0.0027 25.3 3.4 25 489-513 11-35 (77)
No 1
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=100.00 E-value=3.8e-121 Score=1052.05 Aligned_cols=552 Identities=29% Similarity=0.453 Sum_probs=417.7
Q ss_pred CcHHHHHHHHHhhhhhccCCCCcccHHHHHHHHHHhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Q 039467 89 FKPATAFKGAYESLAIESSSGKSVNIQKIWHLLQTMMGEHATVQQTASRKMSLVIGARRHLEWGHEKYIMDTIQSHPAQA 168 (687)
Q Consensus 89 ~~l~~~f~~a~~~~~~~~~~~~~~~i~~~W~~l~~~~~e~~~~~~~~~~~~~iv~gsr~yLE~qf~~~v~~~I~~~p~~A 168 (687)
..|+..|+++++. .+.++.++.++|++++.|+++.. .+.+.+++++||.|||+|||+||++||+++|.+||.+|
T Consensus 2 ~~l~~~f~~~a~~-----~~~~~~~i~~~W~~l~~~~~~~~-~~~~~~~~~~~v~~sr~~LE~qf~~~v~~~v~~~~~~A 75 (613)
T PF04097_consen 2 PNLVEAFASLAQI-----EDFKDRQIADAWKLLSQMTDEPP-SRSSASLRKQIVRGSRRYLEKQFLQYVEETVAKNPNEA 75 (613)
T ss_dssp -HHHHHHHHHHHH------SHHHHHHHHHHHHHHTT----------TTS---HHHHHHHHHHHHHHHHHHHHHCCCTTS-
T ss_pred chHHHHHHHHHhc-----cCCchHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhh
Confidence 3577888888741 13356789999999999998776 67788999999999999999999999999999999999
Q ss_pred hcCCCCCchHHHHHHHHHhhccCCcccccCCcccCCCCCCCcHHHHHHHHhcCCHHHHHHHHHhcc-----CCccHHHHH
Q 039467 169 ALGGVVGNLQRVRAFLRIRLRDYGVLDFDIGDTRRQPPVDTTWQQIYFCLRTGYYDEARNVALSSR-----ASNQFAPLL 243 (687)
Q Consensus 169 ~lGG~P~~~~~V~afl~v~~~~~g~~~~~~~~~~~~~p~~~vWa~IyYlLR~G~~~eA~e~~~~~~-----~~~~F~~~l 243 (687)
++||+|+++++|+|||++++++++.|...+....++ +|+||+||||||||++++|++++++++ ..++|+.||
T Consensus 76 ~~gg~p~~~~~V~afv~~~~~~~~~~~~~~l~~~~~---~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l 152 (613)
T PF04097_consen 76 QLGGVPSTYNKVRAFVNVRLKRPGAWTDSGLEIVNG---DPIWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYL 152 (613)
T ss_dssp ---SSS-HHHHHHHHHHCTTBESSCBSSTT--EETT---EEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHH
T ss_pred cccCCCCcHHHHHHHHHHHhcccCCCcccccccCCC---CccHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHH
Confidence 999999999999999999999888777666554444 449999999999999999999996664 258999999
Q ss_pred HHHHhC-CCCCCHHHHHHhhHHHHHhhhhcccCCCCccchHHHHHHHHHhCCccchhhhhcCchhhhcchhHHHHhhhhc
Q 039467 244 TEWINT-GGMVPPEIAAAASEECDKMLRMGDRVGRAAYDKKKLLLYAIISGSRRQIDRLLRDLPTLFSTIEDFLWFKLSA 322 (687)
Q Consensus 244 ~~y~~s-~~~L~~~~~~~~~~e~~q~~r~~d~~~~~~~DPyK~AvY~iig~cd~~~~~~~~~~~~V~~tiEDwLWlqL~l 322 (687)
++|+++ +++||+++++++..||+|++|... ..||||+|||||||+||++ ++++|+|+.||||||||||++
T Consensus 153 ~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~-----~~DpyK~AvY~ilg~cD~~----~~~~~~V~~tiED~LW~~L~~ 223 (613)
T PF04097_consen 153 KAYASSPDRRLPPELRDKLKLEYNQRIRNST-----DGDPYKRAVYKILGRCDLS----RRHLPEVARTIEDWLWLQLSL 223 (613)
T ss_dssp HHCTTTTSS---TCCCHHHHHHHHHHTTT-T-----TS-HHHHHHHHHHHT--CC----C-S-TTC--SHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC-----CCChHHHHHHHHHhcCCcc----ccchHHHhCcHHHHHHHHHHh
Confidence 999987 479999999999999999998431 1299999999999999974 577899999999999999999
Q ss_pred cccCCCCCCcccccCCCCcccHHHHHHHHHhcCccccccCCCCCcchHHHHHHhhcHHHHHHHHhhccCCCCCcchHHHH
Q 039467 323 IRDVPSEAPSVVLSDGLAPYSLDDLQVYLNKFDPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKESGDEGYNIDAAHI 402 (687)
Q Consensus 323 vre~~~~~~~~~~~~~~~~ytL~~LQ~~i~~~Ge~~F~~~~~~p~~yf~vLlLsgqFE~AI~~L~~~~~~~~~~vdAVH~ 402 (687)
+|+++.++++ ..+.|||++||+.|.+|||+||++ +++|++||++|+||||||+||+||++. +.+++|||||
T Consensus 224 vr~~~~~~~~-----~~e~~~L~~LQ~~i~~~Ge~~F~~-~~~p~~Yf~~LlLtgqFE~AI~~L~~~---~~~~~dAVH~ 294 (613)
T PF04097_consen 224 VREDERSSSS-----AYERYTLEDLQKLILKYGESHFNA-GSNPLLYFQVLLLTGQFEAAIEFLYRN---EFNRVDAVHF 294 (613)
T ss_dssp ---TTSSSSS-----SS----HHHHHHHHHHH-GGGCTT-------HHHHHHHTT-HHHHHHHHHT-----T-HHHHHHH
T ss_pred hccCCCcccc-----ccccccHHHHHHHHHHhchhhccc-chhHHHHHHHHHHHhhHHHHHHHHHhh---ccCcccHHHH
Confidence 9999876532 246999999999999999999999 666999999999999999999999996 7799999999
Q ss_pred HHHHHHhhh--------------------------HHHHHH------HHHhhhcCCccccccccccchhHHHHHHHHHHH
Q 039467 403 SIVLADHGM--------------------------ALEYYA------QAAAAVGGGQLSWTGRANVDQQRQKSLMLKQLL 450 (687)
Q Consensus 403 AIaL~~~gl--------------------------a~~Y~~------~~~~~~~~~~l~~~~r~~~d~~~~~~~~~~~~l 450 (687)
||||+|||+ ++..|+ +...|+ .+.|++|.++|++ |.+ +||+||
T Consensus 295 AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~~~Al---~Y~~li~~~~~~~-~~~-l~~~~l 369 (613)
T PF04097_consen 295 AIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEITDPREAL---QYLYLICLFKDPE-QRN-LFHECL 369 (613)
T ss_dssp HHHHHHTT------------------------HHHHHHHHHHTTTTT-HHHHH---HHHHGGGGS-SCC-HHH-HHHHHH
T ss_pred HHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhccCHHHHH---HHHHHHHHcCCch-HHH-HHHHHH
Confidence 999999995 111121 111111 2234667788755 555 889999
Q ss_pred HHHHHhhcCcceeecc---cCCCCCCcccc------ccCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHhhchHHHHHH
Q 039467 451 TELLLRDGGIYLLLGS---RGAGEEGELGR------YITDLKARQQFLLEAAGQCQEAGLYDKSIELQKRVGAFSMALDT 521 (687)
Q Consensus 451 ~eLvletref~~LLG~---dG~r~~G~I~~------~l~d~~~~~~~i~~aA~~ae~~Gr~~dAi~LY~La~~yd~vl~l 521 (687)
+|||+|||||++|||. ||+|+||+|++ |..+.++.++++.+||++|+++|+++|||+||+|||+||+|+++
T Consensus 370 ~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~l 449 (613)
T PF04097_consen 370 RELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAAREAEERGRFEDAILLYHLAEEYDKVLSL 449 (613)
T ss_dssp HHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999994 99999999999 44455667888899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHHhcCCCcchhhhHHHHhHHHHHHHHHHHHHHHHHHHhCCHHHHH
Q 039467 522 INKCLSEAIFAMSRGRLDGESQTASLIHSGNEILEMEKYYPEVSLHEREQVLEQQTVLRQLEAILSVHKMARSGHYLDAL 601 (687)
Q Consensus 522 ln~~Ls~~ls~~~~~~~~~~~~~~~l~~~a~~i~~~y~~~~~~s~~~~~~~~~~~~~l~~Ll~l~~f~~~~~~~~~~~AL 601 (687)
+|++||++|+++.. .....+..++++.+|++|.++|+.++.++.+.+.+.. .+|.+|++|++||++||+|+|++||
T Consensus 450 ln~~Ls~~l~~~~~-~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~---~t~~~Ll~L~~ff~~~~~g~~~~AL 525 (613)
T PF04097_consen 450 LNRLLSQVLSQPSS-SSLSDSERERLIELAKEILERYKSNPHISSKVSRKNR---ETFQLLLDLAEFFDLYHAGQYEQAL 525 (613)
T ss_dssp HHHHHHHHHHCSST-SSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHHH---HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHcCccc-cccccchhhhHHHHHHHHHHHHHhCcchHhhccHHHH---HHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999998765 1122334578999999999999988765444444443 4567899999999999999999999
Q ss_pred HHHhCCCcccCCCCChHHHHHHhccCChhHHHhhhHHHHHHHHHhHhhhcc-----------chhHHHHHHHHHHH--HH
Q 039467 602 REVAKLPFLPFDPRVPDAMVDVFQSLSPHVQACVPDLLRVALTCLDNVTDT-----------DGSLRAMRAKIANF--LA 668 (687)
Q Consensus 602 ~~i~~L~ilPl~~~~v~~~a~~f~~l~~~V~~~iP~lLl~~m~cl~~~~~~-----------~~~~~~l~~~~~~~--~a 668 (687)
+.|++|+|||.++.+|++||++|+++|++|++|+|+||+++|+|+.++.++ ...++.++++++++ ||
T Consensus 526 ~~i~~L~liP~~~~~V~~~a~~f~~l~~~V~~~lp~lLl~~M~~l~~~~~~~~~~~~~~~~~~~~l~~lr~~ak~l~~fA 605 (613)
T PF04097_consen 526 DIIEKLDLIPLDPSEVRRCAENFRQLDDEVRRNLPDLLLAAMDCLSRLYQRLKTSSYGSSSRQQQLDELREKAKALMTFA 605 (613)
T ss_dssp HHHHHTT-S-S-HHHHHHHHHCGCCS-HHHHTTHHHHHHHHHHHHHHHHHHHHSTT---TTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998766 23578999999987 99
Q ss_pred hhcccCCC
Q 039467 669 NNMNQNWP 676 (687)
Q Consensus 669 g~i~y~~P 676 (687)
|||+||||
T Consensus 606 g~i~yrmP 613 (613)
T PF04097_consen 606 GMIPYRMP 613 (613)
T ss_dssp HHGCCCS-
T ss_pred HhcCCCCC
Confidence 99999999
No 2
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.4e-119 Score=1013.76 Aligned_cols=627 Identities=31% Similarity=0.462 Sum_probs=526.9
Q ss_pred ChhHHHHHHHHHHhhcCCCCCCCccccCCCCCCCCCcccccCCCCCCCCCCCCCcccCCCCchhHHHHHHHHHHHHHHHH
Q 039467 1 EDWQKEKRDFLRSLSRISTLPKTNMTDTSTGGTLPGQMASMASSPQISSGPSGMELVPLANKPLLEKKATVYAEVVKNLN 80 (687)
Q Consensus 1 ~~w~~~k~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~~~Ya~~V~~lN 80 (687)
.||+++|++|||.|++ ++.++++.++ .+++++..+...+|..|+++ +.+.. + +-.+|...|+++|+++|
T Consensus 136 ~~w~~~K~~fl~~l~~----~~~~~~~~s~-~~~~s~~s~~~~~P~~s~~~-~~el~---~--~~ar~~~~~~e~l~k~~ 204 (835)
T KOG2168|consen 136 SDWEEEKREFLNALLA----SSQDFIDASR-ESEPSQRSPRPNSPGRSSLK-GIELN---S--IYARKAYIYNEVLHKLN 204 (835)
T ss_pred HHHHHHHHHHHHHHhh----cccccccccc-cCCccccccCCCCCCcCCCc-hhhhh---h--HHHHHHHHHHHHHHHhh
Confidence 4899999999999999 7778888888 88888877776666555555 23211 1 35677888888888888
Q ss_pred HHHhcCCCCcHHHHHHHHHhhhhhccCCCCcccHHHHHHHHHHhhcC-------CcchhhhHHHHHHHHHHHHHHHHHHH
Q 039467 81 NARQQGLPFKPATAFKGAYESLAIESSSGKSVNIQKIWHLLQTMMGE-------HATVQQTASRKMSLVIGARRHLEWGH 153 (687)
Q Consensus 81 ~~r~~~~~~~l~~~f~~a~~~~~~~~~~~~~~~i~~~W~~l~~~~~e-------~~~~~~~~~~~~~iv~gsr~yLE~qf 153 (687)
.+ +.|+-+...|..+.++++ +..+.++|..+.+|++. +...+++++.+++||+|||+|||+||
T Consensus 205 ~~---~~p~lv~~~~~~~~~s~~-------d~~i~~~w~~l~~~~~~~~~~t~d~~~~~~~~~~~~~~Ve~arkyLE~~f 274 (835)
T KOG2168|consen 205 KA---GQPNLVDLLFNVASQSLG-------DEDIADMWTNLQSMTQLTDPATRDDSKNRSGVSKRMNFVEGARKYLEQQF 274 (835)
T ss_pred hc---cCchHHHHHHHHHHHhcc-------chHHHHHHHHHHHHHhccccccccchhhhhHHHhhHHHHHHHHHHHHHHH
Confidence 88 667777777776666653 23488999999999853 23456778999999999999999999
Q ss_pred HHHHHHHHhcChhhhhcCCCCCchHHHHHHHHHhhc-cCCcccccCCcccCCCCCCCcHHHHHHHHhcCCHHHHHHHHHh
Q 039467 154 EKYIMDTIQSHPAQAALGGVVGNLQRVRAFLRIRLR-DYGVLDFDIGDTRRQPPVDTTWQQIYFCLRTGYYDEARNVALS 232 (687)
Q Consensus 154 ~~~v~~~I~~~p~~A~lGG~P~~~~~V~afl~v~~~-~~g~~~~~~~~~~~~~p~~~vWa~IyYlLR~G~~~eA~e~~~~ 232 (687)
.+||.++|.+||++|++||+||++++||||+++++. +.|.|...+.++.+ .| +||+||||||||+.++|++++++
T Consensus 275 ~~~~~~~i~~n~~~a~~GG~p~~~~~VrAfl~~~~~~~~~~~g~~D~~~~~-~P---~W~~vyy~lR~G~lk~A~~~l~e 350 (835)
T KOG2168|consen 275 LEYMDKTIKKNLHQAALGGVPGNYQKVRAFLNIKLQARNGSWGLSDLEVIN-VP---LWPLVYYLLRCGDLKAASQFLNE 350 (835)
T ss_pred HHHHHHHHHhhHHHHhhcCCccHHHHHHHHHHHHhcccccccCCCcccccC-cc---chHHHHHHHhhhhHHHHHHHHHH
Confidence 999999999999999999999999999999997764 55678777776655 56 99999999999999999999999
Q ss_pred ccCC-----ccHHHHHHHHHhCC-CCCCHHHHHHhhHHHHHhhhhcccCCCCccchHHHHHHHHHhCCccchhhhhcCch
Q 039467 233 SRAS-----NQFAPLLTEWINTG-GMVPPEIAAAASEECDKMLRMGDRVGRAAYDKKKLLLYAIISGSRRQIDRLLRDLP 306 (687)
Q Consensus 233 ~~~~-----~~F~~~l~~y~~s~-~~L~~~~~~~~~~e~~q~~r~~d~~~~~~~DPyK~AvY~iig~cd~~~~~~~~~~~ 306 (687)
++.. ..|.+|+++|..+. ..|+.++..+++.||+ ++++||||+||||||||||+ ++++|
T Consensus 351 ~~~~~~~l~~~f~~y~~A~~~~~~~~le~qlrl~~~~~l~----------~~~~DpyK~AvY~iig~cd~-----~~~~~ 415 (835)
T KOG2168|consen 351 NKDFFEKLAELFPTYFNAYAKNLSSKLEKQLRLRLRSELG----------RNSTDPYKLAVYKIIGGCDL-----RRDLP 415 (835)
T ss_pred hhhhHHHHHHHHHHHHHhhhcCCCccccHHHHHHHHHHhc----------cccCChHHHHHHHHHhcCcc-----ccccH
Confidence 9753 57777777777553 4777776665554444 57899999999999999996 68999
Q ss_pred hhhcchhHHHHhhhhccccCCCCCCcccccCCCCcccHHHHHHHHHhcCccccccCCCCCcchHHHHHHhhcHHHHHHHH
Q 039467 307 TLFSTIEDFLWFKLSAIRDVPSEAPSVVLSDGLAPYSLDDLQVYLNKFDPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYL 386 (687)
Q Consensus 307 ~V~~tiEDwLWlqL~lvre~~~~~~~~~~~~~~~~ytL~~LQ~~i~~~Ge~~F~~~~~~p~~yf~vLlLsgqFE~AI~~L 386 (687)
+|+.||||||||||+++|+++.++++.+. +-+.+++.|.+|++|||+||+++|++|.+||++|+||||||+||.||
T Consensus 416 ev~~tiED~LW~kL~~ir~~~~~sds~~~----~~~~~~~~~~il~~YG~sYFt~ng~~p~~Yf~~LlLsgqfe~AI~fL 491 (835)
T KOG2168|consen 416 EVADTIEDFLWFKLSLIRVDDQGSDSPTD----ELFLLEDQKDILEAYGESYFTNNGSQPLLYFQVLLLSGQFERAIEFL 491 (835)
T ss_pred HHHhHHHHHHHHHHHheeecCCCCcchHH----hhhhHHHHHHHHHHhHHHhhccCCCChHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999986654331 24556666666899999999999999999999999999999999999
Q ss_pred hhccCCCCCcchHHHHHHHHHHhhh------------------------------HHHHHHHHHh--hhcCCcccccccc
Q 039467 387 SKESGDEGYNIDAAHISIVLADHGM------------------------------ALEYYAQAAA--AVGGGQLSWTGRA 434 (687)
Q Consensus 387 ~~~~~~~~~~vdAVH~AIaL~~~gl------------------------------a~~Y~~~~~~--~~~~~~l~~~~r~ 434 (687)
+++ +..++|||||||+|++||+ ...|.-.... +..++.+.|++|+
T Consensus 492 ~~~---~~~~~dAVH~AI~l~~lglL~~~~s~~~~ll~~d~~d~~k~~~lnf~rLi~~Ytk~fe~~d~~~al~y~~~lr~ 568 (835)
T KOG2168|consen 492 HRE---EPNRIDAVHVAIALAELGLLRTSSSTSQELLSIDPNDPPKSRRLNFARLIIAYTKSFEYTDTRVALQYYYLLRL 568 (835)
T ss_pred Hhh---cCCcchhHHHHHHHHHhhhhccCCCCCCcccccCCCCCcccccccHHHHHHHHHHHHHhccchhhhheeeeecc
Confidence 999 7788899999999999994 3344422222 3346777899999
Q ss_pred ccchhHHHHHHHHHHHHHHHHhh-cCcceeec---ccCCCCCCccccccCChHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q 039467 435 NVDQQRQKSLMLKQLLTELLLRD-GGIYLLLG---SRGAGEEGELGRYITDLKARQQFLLEAAGQCQEAGLYDKSIELQK 510 (687)
Q Consensus 435 ~~d~~~~~~~~~~~~l~eLvlet-ref~~LLG---~dG~r~~G~I~~~l~d~~~~~~~i~~aA~~ae~~Gr~~dAi~LY~ 510 (687)
++|++ +.+ |||.||++||++| ++|+.||| +||.|+||+|++|++++.+.++++.+||++|+++|+++|||+|||
T Consensus 569 ~~d~q-~~~-l~l~~v~~lVl~t~~~f~~iLG~i~~dG~r~~G~l~~f~~~~~~~~~i~~~vA~~a~~~G~~~~sI~LY~ 646 (835)
T KOG2168|consen 569 NKDPQ-GSN-LFLKCVCELVLETEEEFDLILGKIKPDGSREPGLLDEFLPLIEDLQKIILEVASEADEDGLFEDAILLYH 646 (835)
T ss_pred cCChh-HHH-HHHHHHHHHHHhccccHHHHhcccCCCCCCCcchHhhhccchhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99998 556 7889999999999 88999999 699999999999999998899999999999999999999999999
Q ss_pred HhhchHHHHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHHhcCCCcchhhhHHHHhHHHHHHHHHHHHHHHH
Q 039467 511 RVGAFSMALDTINKCLSEAIFAMSRGRLDGESQTASLIHSGNEILEMEKYYPEVSLHEREQVLEQQTVLRQLEAILSVHK 590 (687)
Q Consensus 511 La~~yd~vl~lln~~Ls~~ls~~~~~~~~~~~~~~~l~~~a~~i~~~y~~~~~~s~~~~~~~~~~~~~l~~Ll~l~~f~~ 590 (687)
|||+||+|+++||++||++|++...++..++ .+..++..+.+.|..++..+.+. . +.+|.+|+.++.||+
T Consensus 647 lag~yd~al~link~LS~~l~~~~~~~~n~e----rl~~La~~~~~~y~~~~~~~~~~---~---~~t~~lLl~~~~~f~ 716 (835)
T KOG2168|consen 647 LAGDYDKALELINKLLSQVLHSPTLGQSNKE----RLGDLALSMNDIYESNKGDSAKV---V---VKTLSLLLDLVSFFD 716 (835)
T ss_pred HhhhhhHHHHHHHHHHHHHHhhcccCCcchh----hHHHHHHHHHHHHHhccCcchhh---H---HHHHHHHHHHHHHHH
Confidence 9999999999999999999999877764444 45666668888888776655532 1 135567999999999
Q ss_pred HHHhCCHHHHHHHHhCCCcccCCCCChHHHHHHhccCChhHHHhhhHHHHHHHHHhHhhhcc--------c--------h
Q 039467 591 MARSGHYLDALREVAKLPFLPFDPRVPDAMVDVFQSLSPHVQACVPDLLRVALTCLDNVTDT--------D--------G 654 (687)
Q Consensus 591 ~~~~~~~~~AL~~i~~L~ilPl~~~~v~~~a~~f~~l~~~V~~~iP~lLl~~m~cl~~~~~~--------~--------~ 654 (687)
+||.|+|+.||++++.|++||+++..++.++.+|++++++|++++|++|+++|.|+.....+ . .
T Consensus 717 ~y~~~~~e~aL~~le~l~LiP~~~~~v~~~~~~~~~~~~e~~~~lp~~l~~tm~i~~~~~~~lk~~~~~~s~~~~~~~~~ 796 (835)
T KOG2168|consen 717 LYHNGEWEEALSILEHLDLIPLDPLSVDEIVANFRNLADEFRKVLPDVLLATMDILQIAMKRLKTTYPSSSKRPQRVSET 796 (835)
T ss_pred HHhhhHHHHHHHHHHHHhccCCChhhhhHHHHHHHhcchhhhhcChhHHHHHHHHHHHHHHHHHhccccccccchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999775433 1 1
Q ss_pred hHHHHHHHHHHH--HHhhcccCCChHHHHHHHhh
Q 039467 655 SLRAMRAKIANF--LANNMNQNWPRDLYERVARS 686 (687)
Q Consensus 655 ~~~~l~~~~~~~--~ag~i~y~~P~~~~~~la~~ 686 (687)
.++.++.+++.+ ||+||+||||++++++|.|.
T Consensus 797 ~l~~lr~~a~~i~~~a~~I~yRmps~t~~rL~~~ 830 (835)
T KOG2168|consen 797 KLDRLRDQARAIVMMAAMIPYRMPSQTNSRLVQL 830 (835)
T ss_pred HHHHHHHHHHHHHHHHHhccccCChHHHHHHHHH
Confidence 347889999976 99999999999999999874
No 3
>PF04121 Nup84_Nup100: Nuclear pore protein 84 / 107 ; InterPro: IPR007252 Nup84p forms a complex with five proteins, including Nup120p, Nup85p, Sec13p, and a Sec13p homolog. This Nup84p complex in conjunction with Sec13-type proteins is required for correct nuclear pore biogenesis [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 3CQC_A 3CQG_A 3I4R_A 3IKO_I 3JRO_C.
Probab=97.05 E-value=0.035 Score=66.46 Aligned_cols=188 Identities=16% Similarity=0.212 Sum_probs=93.9
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHhccCCccHHHHHH---HHHhCCCCCCHHHH--------HHhhHHHHHhhh-hcccCCC
Q 039467 210 TWQQIYFCLRTGYYDEARNVALSSRASNQFAPLLT---EWINTGGMVPPEIA--------AAASEECDKMLR-MGDRVGR 277 (687)
Q Consensus 210 vWa~IyYlLR~G~~~eA~e~~~~~~~~~~F~~~l~---~y~~s~~~L~~~~~--------~~~~~e~~q~~r-~~d~~~~ 277 (687)
+|..||-|+|||.+++|.+..++.... --..-+. .|.++ .+.++.. .+-..=|.+... .. ..
T Consensus 136 ~~~~i~~llR~G~~~eA~~lc~~~gq~-wrAasL~G~~~~~dp--~~~~~~~~~~~~~~G~~~r~LWk~~c~~ls---~~ 209 (697)
T PF04121_consen 136 LLKYIFELLRAGRIEEAQELCRERGQP-WRAASLCGWQLYHDP--NLDPELSDEDERMEGNRSRALWKRACYKLS---QN 209 (697)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHTT-H-HHHHHHHTTSB-B-T--TTSGGGTTT-SS-BSBTTHHHHHHHHHHHH---HT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHcCccccCCc--ccccccccccccccCChhHHHHHHHHHHHH---hC
Confidence 899999999999999999999876421 1111111 12111 1111110 011112333321 11 14
Q ss_pred CccchHHHHHHHHHhCCccchhhhhcCchhhh-cchhHHHHhhhhccccC---------CCCCCcc-cccCCCCcc-cHH
Q 039467 278 AAYDKKKLLLYAIISGSRRQIDRLLRDLPTLF-STIEDFLWFKLSAIRDV---------PSEAPSV-VLSDGLAPY-SLD 345 (687)
Q Consensus 278 ~~~DPyK~AvY~iig~cd~~~~~~~~~~~~V~-~tiEDwLWlqL~lvre~---------~~~~~~~-~~~~~~~~y-tL~ 345 (687)
.+.|||-+|||.+|+| +. ...-.|+ .|-||+||.+++..-+. ....... .... .... .-.
T Consensus 210 ~~~~~yEraiY~~L~G-~~------~~~l~~~~~sWeD~lwa~~n~~l~~~~d~~l~~~~~~~~~~~~~lP-~~~~~~~~ 281 (697)
T PF04121_consen 210 PNLDPYERAIYGALSG-DL------SSVLPVCSSSWEDYLWAYLNALLESRVDQELRSHCPKSSEELLPLP-SPQWNQER 281 (697)
T ss_dssp SSS-HHHHHHHHHHHT-S---------HHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTSS-GGG-S------------
T ss_pred CCCCHHHHHHHHHHhc-cc------HhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhccCC-chhhhhcc
Confidence 5789999999999985 43 3344677 99999999998875432 1111100 0000 0001 011
Q ss_pred HHHHHHHhc---CccccccCCCCCcchHHHHHHhhcHHHHHHHHhhccCCCC----------Ccc----hHHHHHHHHHH
Q 039467 346 DLQVYLNKF---DPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKESGDEG----------YNI----DAAHISIVLAD 408 (687)
Q Consensus 346 ~LQ~~i~~~---Ge~~F~~~~~~p~~yf~vLlLsgqFE~AI~~L~~~~~~~~----------~~v----dAVH~AIaL~~ 408 (687)
++++.+.+. ..........+|+--.|.-+++++++.-+.-+.....+.. ... =.+|++|.|..
T Consensus 282 ~~~~il~~L~~~~~~~~~~ea~~p~r~iq~~ii~~~i~~ll~~~~~~L~~~~~~~~~~~~~~~~~~~LRf~aHl~L~lr~ 361 (697)
T PF04121_consen 282 SLESILNELSSSSNERVREEARNPYRVIQAAIILNDIDSLLESFAEWLSDAAKGSEDSNDLLEDPHLLRFLAHLILFLRS 361 (697)
T ss_dssp -HHHHHHHH----HHHSHHHHHSTTHHHHHHHHCS-HHHHHHHHHHCTHH-----------TTSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhccchhHHHHhhChHHHHHHHHHHccHHHHHHHHHHHHHhhcccccccccccccHhHHHHHHHHHHHHHH
Confidence 344443333 1111222234588777888888888887776533210000 011 15899999998
Q ss_pred hhh
Q 039467 409 HGM 411 (687)
Q Consensus 409 ~gl 411 (687)
.|.
T Consensus 362 l~~ 364 (697)
T PF04121_consen 362 LGP 364 (697)
T ss_dssp HST
T ss_pred hcC
Confidence 883
No 4
>KOG1964 consensus Nuclear pore complex, rNup107 component (sc Nup84) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.92 E-value=0.1 Score=60.78 Aligned_cols=106 Identities=19% Similarity=0.265 Sum_probs=64.3
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHhccCCc--cHHHHHHHHHhCCCCCCHHHHHHhhHHHHHhhh-h-cccCCCCccchHHH
Q 039467 210 TWQQIYFCLRTGYYDEARNVALSSRASN--QFAPLLTEWINTGGMVPPEIAAAASEECDKMLR-M-GDRVGRAAYDKKKL 285 (687)
Q Consensus 210 vWa~IyYlLR~G~~~eA~e~~~~~~~~~--~F~~~l~~y~~s~~~L~~~~~~~~~~e~~q~~r-~-~d~~~~~~~DPyK~ 285 (687)
..-.||-|.|+|..++|++.++...+.- --..-...|-+.+--.+-+....-.++|....| . +.-....+.|||-+
T Consensus 223 ~~k~~F~LIRaG~~deal~Lck~~G~~wr~A~LqG~~~y~dPnl~i~~E~~~~eGn~~k~lwrrs~~~ltq~k~~d~YeR 302 (800)
T KOG1964|consen 223 FFKYIFELIRAGETDEALELCKRLGNGWRAAILQGISEYRDPNLDIPLEASPQEGNKYKRLWRRSCYQLTQEKSQDSYER 302 (800)
T ss_pred HHHHHHHHHHccchHHHHHHHHHhCcHHHHHHHHHHHHhhCCCccchhhhCcccCCcHHHHHHHHHHHHHHhhccChHHH
Confidence 5888999999999999999999775321 112223444433211111111111122322222 1 10011457899999
Q ss_pred HHHHHHhCCccchhhhhcCchhhhcc-hhHHHHhhhhc
Q 039467 286 LLYAIISGSRRQIDRLLRDLPTLFST-IEDFLWFKLSA 322 (687)
Q Consensus 286 AvY~iig~cd~~~~~~~~~~~~V~~t-iEDwLWlqL~l 322 (687)
|.|..|++-- .++-.|+.| .||-+|.++..
T Consensus 303 A~y~~lSG~l-------~nl~~l~~s~Wed~vWAy~n~ 333 (800)
T KOG1964|consen 303 AIYGALSGIL-------GNLLPLLKSGWEDKVWAYLNS 333 (800)
T ss_pred HHHHHHhccc-------cchhhHHhcchHHHHHHHHHH
Confidence 9999998752 556667766 99999999875
No 5
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=90.11 E-value=1.3 Score=51.77 Aligned_cols=326 Identities=15% Similarity=0.193 Sum_probs=119.3
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHhccC-----CccHHHHHHHHHhC-CC------CCCHHHHHHhhHHHHHhhhh----cc
Q 039467 210 TWQQIYFCLRTGYYDEARNVALSSRA-----SNQFAPLLTEWINT-GG------MVPPEIAAAASEECDKMLRM----GD 273 (687)
Q Consensus 210 vWa~IyYlLR~G~~~eA~e~~~~~~~-----~~~F~~~l~~y~~s-~~------~L~~~~~~~~~~e~~q~~r~----~d 273 (687)
-|..|+-|+=.|..++|.++++.+.. ..+...-+...+.+ |. .-.+++.. ...+|....+. ..
T Consensus 151 FW~~v~~lvlrG~~~~a~~lL~~~s~~~~~~~~~~~~~~~~LL~~~P~~~~~~~~s~~~f~~-~~~~W~~~~~~l~~~~~ 229 (566)
T PF07575_consen 151 FWDYVQRLVLRGLFDQARQLLRLHSSYQSYSLQSAFEALIQLLSSMPRYRPNSGQSESEFSS-QWREWKSECRRLRSSSL 229 (566)
T ss_dssp HHHHHHHHHHTT-HHHHHHHH-TTTTTTTHHHHHHHHHHHHHHTT------------SS-HH-HHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccccchhHHHHHHHHHHHHHhCCCccccchhhhHHHHH-HHHHHHHHHHHHHHHhh
Confidence 79999999999999999999976643 22333444444433 21 11122322 22344444432 11
Q ss_pred cCCCCccchHHHHHHHHHhCCccchhhhhcCchhhhcchhHHHHhhhhccccCCCCCCcccccCCCCccc-HHHHHHH-H
Q 039467 274 RVGRAAYDKKKLLLYAIISGSRRQIDRLLRDLPTLFSTIEDFLWFKLSAIRDVPSEAPSVVLSDGLAPYS-LDDLQVY-L 351 (687)
Q Consensus 274 ~~~~~~~DPyK~AvY~iig~cd~~~~~~~~~~~~V~~tiEDwLWlqL~lvre~~~~~~~~~~~~~~~~yt-L~~LQ~~-i 351 (687)
........|.=.-+++||.|-+ ..+....+||.=+-..+.--..+.. .... |.++-+. +
T Consensus 230 ~~~~~~~~~~L~~l~~Il~G~~----------~~i~~~~~~WyE~~~a~~ly~~P~~---------~~~e~l~~~a~~~~ 290 (566)
T PF07575_consen 230 QDGPFEIRENLEDLLKILLGDE----------DTILEYSQDWYEALVALLLYVDPTC---------KPFELLHEYAQSCL 290 (566)
T ss_dssp --S-HHHHHHHHHHHHHHHT-H----------HHHHHT-SSHHHHHHHHHHHT---------------TTTHHHHHHHHH
T ss_pred ccCchhhHHHHHHHHHHHCCCH----------HHHHHHhCcHHHHHHHhheeeCCCc---------chhhhHHHHHHHHH
Confidence 1111123445568889987643 2344466776533322221111110 0223 6665555 7
Q ss_pred HhcCccccccCCCCCcchHHHHHHhhcHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhhHHHHHHHHHhhhcCCccccc
Q 039467 352 NKFDPSYYTKNGKDPLVYPYVLLLSIQLLPAVLYLSKESGDEGYNIDAAHISIVLADHGMALEYYAQAAAAVGGGQLSWT 431 (687)
Q Consensus 352 ~~~Ge~~F~~~~~~p~~yf~vLlLsgqFE~AI~~L~~~~~~~~~~vdAVH~AIaL~~~gla~~Y~~~~~~~~~~~~l~~~ 431 (687)
..+++ +..+|+-=..+=++.|..+.+|..+.+. -+...=|+|+|--|+..|+.-++... ..+
T Consensus 291 ~~~~~-----~~~~~~e~~~~~i~~~d~~~vL~~~~~~---~~~~w~aahladLl~~~g~L~~~~~~---~~~------- 352 (566)
T PF07575_consen 291 EEFPP-----DSTNPLEQILLAIFEGDIESVLKEISSL---FDDWWFAAHLADLLEHKGLLEDSEQE---DFG------- 352 (566)
T ss_dssp HHS--------TTSTTHHHHHHHHTS--GGGHHHHHHH-----HHHHHHHHHHHHHHTTSS--SS---------------
T ss_pred hcCCC-----CCCCHHHHHHHHHHccCHHHHHHHHHHH---ccchhHHHHHHHHHHhcCcccccccc---ccc-------
Confidence 77744 2233543334556689999999999875 33456699999999888754311100 000
Q ss_pred cccccchhHHHHHHHHHHHHHHHHhhcCcceeec------ccCCCCCCccccccC----ChHH-----------------
Q 039467 432 GRANVDQQRQKSLMLKQLLTELLLRDGGIYLLLG------SRGAGEEGELGRYIT----DLKA----------------- 484 (687)
Q Consensus 432 ~r~~~d~~~~~~~~~~~~l~eLvletref~~LLG------~dG~r~~G~I~~~l~----d~~~----------------- 484 (687)
+. .-+..+.-+.-.+|.-...-+..=+| ..| .+.|+.+++ +.++
T Consensus 353 ~~------~lre~~ll~YA~~L~s~~~lW~vai~yL~~c~~~g---~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~ 423 (566)
T PF07575_consen 353 GS------SLREYLLLEYASSLMSHHSLWQVAIGYLSSCPDEG---RERIEELLPRVPLDTNDDAEKLLEICAELGLEDV 423 (566)
T ss_dssp TS-------HHHHHHHHHHHHHHT-TTTHHHHHHHHHS-SSS----HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHH
T ss_pred cc------cHHHHHHHHHHHHHhcCcchHHHHHHHHHHCChhh---HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHH
Confidence 00 01122222333333332222222112 123 455554432 1111
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHhhchHHHHHHHHHHHHHHHhhhcCCCCCccccchhHHHHHHHHHHHHhcCCCc
Q 039467 485 RQQFLLEAAGQCQEAGLYDKSIELQKRVGAFSMALDTINKCLSEAIFAMSRGRLDGESQTASLIHSGNEILEMEKYYPEV 564 (687)
Q Consensus 485 ~~~~i~~aA~~ae~~Gr~~dAi~LY~La~~yd~vl~lln~~Ls~~ls~~~~~~~~~~~~~~~l~~~a~~i~~~y~~~~~~ 564 (687)
.+++....|.++-.+|++..|+.-|-.|+|++.|=.+.+++|.+.+.... + .. ..++. .|.. ....
T Consensus 424 a~~I~~~~~~~~~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~-~--~~----~~ll~---~i~~----~~~~ 489 (566)
T PF07575_consen 424 AREICKILGQRLLKEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGE-P--LD----DDLLD---NIGS----PMLL 489 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCC-c--cc----HHHHH---Hhcc----hhhh
Confidence 11222347778888899999999999999999999998888855554321 0 11 11111 1100 0000
Q ss_pred chhhhHHHHhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhCC
Q 039467 565 SLHEREQVLEQQTVLRQLEAILSVHKMARSGHYLDALREVAKL 607 (687)
Q Consensus 565 s~~~~~~~~~~~~~l~~Ll~l~~f~~~~~~~~~~~AL~~i~~L 607 (687)
+ ..|.-|-...+|++.+..+++.+|.+.+-.|
T Consensus 490 ----~-------~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~L 521 (566)
T PF07575_consen 490 ----S-------QRLSFLAKYREFYELYDEGDFREAASLLVSL 521 (566)
T ss_dssp -------------------------------------------
T ss_pred ----h-------hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 0 1112344568899999999999998765543
No 6
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=59.82 E-value=32 Score=41.70 Aligned_cols=75 Identities=24% Similarity=0.276 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhhcCcceeecccCCCCCCccccccC---ChHHHHHHHHHHHHHHHHcCChhhHHHHHHHhhchHHHHHH
Q 039467 445 MLKQLLTELLLRDGGIYLLLGSRGAGEEGELGRYIT---DLKARQQFLLEAAGQCQEAGLYDKSIELQKRVGAFSMALDT 521 (687)
Q Consensus 445 ~~~~~l~eLvletref~~LLG~dG~r~~G~I~~~l~---d~~~~~~~i~~aA~~ae~~Gr~~dAi~LY~La~~yd~vl~l 521 (687)
|++.+| ||..+|..|..|= +|.+.+. |.+ +|.++|...++..+|+.||.|.-+|.+|..|+.|
T Consensus 1050 m~~kAL-elAF~tqQf~aL~---------lIa~DLd~~sDp~----ll~RcadFF~~~~qyekAV~lL~~ar~~~~Alql 1115 (1416)
T KOG3617|consen 1050 MIGKAL-ELAFRTQQFSALD---------LIAKDLDAGSDPK----LLRRCADFFENNQQYEKAVNLLCLAREFSGALQL 1115 (1416)
T ss_pred chHHHH-HHHHhhcccHHHH---------HHHHhcCCCCCHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 7888888887642 2222221 333 5778999999999999999999999999999998
Q ss_pred H-------HHHHHHHHhhh
Q 039467 522 I-------NKCLSEAIFAM 533 (687)
Q Consensus 522 l-------n~~Ls~~ls~~ 533 (687)
. ...+++.+...
T Consensus 1116 C~~~nv~vtee~aE~mTp~ 1134 (1416)
T KOG3617|consen 1116 CKNRNVRVTEEFAELMTPT 1134 (1416)
T ss_pred HhcCCCchhHHHHHhcCcC
Confidence 4 34566666543
No 7
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=53.35 E-value=19 Score=33.51 Aligned_cols=37 Identities=32% Similarity=0.540 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCChhhHHHHHHHhhchHHHHHHHHHHH
Q 039467 490 LEAAGQCQEAGLYDKSIELQKRVGAFSMALDTINKCL 526 (687)
Q Consensus 490 ~~aA~~ae~~Gr~~dAi~LY~La~~yd~vl~lln~~L 526 (687)
..|++.|++.|.++.|+.||.-.|+|+.|++++...+
T Consensus 73 ~~~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~ 109 (140)
T smart00299 73 EKVGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHL 109 (140)
T ss_pred HHHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcc
Confidence 3499999999999999999999999999999987654
No 8
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=51.89 E-value=46 Score=38.76 Aligned_cols=76 Identities=14% Similarity=0.294 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhcChhhhhcCCCCCchHHHHHHHHHh----------h------ccCCcccccCCcccCCCCCCCcHHH
Q 039467 150 EWGHEKYIMDTIQSHPAQAALGGVVGNLQRVRAFLRIR----------L------RDYGVLDFDIGDTRRQPPVDTTWQQ 213 (687)
Q Consensus 150 E~qf~~~v~~~I~~~p~~A~lGG~P~~~~~V~afl~v~----------~------~~~g~~~~~~~~~~~~~p~~~vWa~ 213 (687)
+.....||...+.+ |+|+.++.|+++..-. . ...|...... +....+|...+|..
T Consensus 127 ~~~~~~yl~~~l~K--------gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~-~~~~~~p~~~lw~~ 197 (517)
T PF12569_consen 127 KERLDEYLRPQLRK--------GVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGD-DEEKEPPSTLLWTL 197 (517)
T ss_pred HHHHHHHHHHHHhc--------CCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCcc-ccccCCchHHHHHH
Confidence 44455556555555 8999999999774411 0 0112122111 11234565558977
Q ss_pred HHHHH---hcCCHHHHHHHHHhcc
Q 039467 214 IYFCL---RTGYYDEARNVALSSR 234 (687)
Q Consensus 214 IyYlL---R~G~~~eA~e~~~~~~ 234 (687)
.|-.. +.|++++|+++++..-
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI 221 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAI 221 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 76544 8999999999999653
No 9
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=49.13 E-value=38 Score=41.19 Aligned_cols=102 Identities=19% Similarity=0.253 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHhCCCcccCCCCCh----HHHHHHhccCChhHHHhhhHHHHHHHHHh---------
Q 039467 580 RQLEAILSVHKMARSGHYLDALREVAKLPFLPFDPRVP----DAMVDVFQSLSPHVQACVPDLLRVALTCL--------- 646 (687)
Q Consensus 580 ~~Ll~l~~f~~~~~~~~~~~AL~~i~~L~ilPl~~~~v----~~~a~~f~~l~~~V~~~iP~lLl~~m~cl--------- 646 (687)
..+..+-+.+-.=+-..--+-|+.+.-+++.|.+.+.. +..+..|..+.|+|.-+.|+++...|..+
T Consensus 709 l~~~~~f~~y~~~~~e~aL~~le~l~LiP~~~~~v~~~~~~~~~~~~e~~~~lp~~l~~tm~i~~~~~~~lk~~~~~~s~ 788 (835)
T KOG2168|consen 709 LDLVSFFDLYHNGEWEEALSILEHLDLIPLDPLSVDEIVANFRNLADEFRKVLPDVLLATMDILQIAMKRLKTTYPSSSK 788 (835)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhccCCChhhhhHHHHHHHhcchhhhhcChhHHHHHHHHHHHHHHHHHhccccccc
Confidence 33444444444444444445555666677777777774 56678888888888888888887776544
Q ss_pred ----------HhhhccchhHHHHHHHHHHHHHhhcccCCChHHHH
Q 039467 647 ----------DNVTDTDGSLRAMRAKIANFLANNMNQNWPRDLYE 681 (687)
Q Consensus 647 ----------~~~~~~~~~~~~l~~~~~~~~ag~i~y~~P~~~~~ 681 (687)
.+++++.+++..+..++---+.+.+.-+||+.-++
T Consensus 789 ~~~~~~~~~l~~lr~~a~~i~~~a~~I~yRmps~t~~rL~~~e~~ 833 (835)
T KOG2168|consen 789 RPQRVSETKLDRLRDQARAIVMMAAMIPYRMPSQTNSRLVQLEVS 833 (835)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHhh
Confidence 45666777888888887766788888788776654
No 10
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=48.27 E-value=22 Score=29.26 Aligned_cols=35 Identities=31% Similarity=0.525 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHhhchHHHHHHHHHHHHHH
Q 039467 489 LLEAAGQCQEAGLYDKSIELQKRVGAFSMALDTINKCLSEA 529 (687)
Q Consensus 489 i~~aA~~ae~~Gr~~dAi~LY~La~~yd~vl~lln~~Ls~~ 529 (687)
++.-|.++|+.|++++|+.+|. .+++.+...+...
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~------~ai~~l~~~~~~~ 42 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYK------EAIEYLMQALKSE 42 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHH------HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHH------HHHHHHHHHhccC
Confidence 4678999999999999999975 5555566555544
No 11
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=44.06 E-value=1.7e+02 Score=37.11 Aligned_cols=44 Identities=18% Similarity=0.201 Sum_probs=33.9
Q ss_pred CCCCcHHHHHHHHhcCCHHHHHHHHHhccC---------CccHHHHHHHHHhC
Q 039467 206 PVDTTWQQIYFCLRTGYYDEARNVALSSRA---------SNQFAPLLTEWINT 249 (687)
Q Consensus 206 p~~~vWa~IyYlLR~G~~~eA~e~~~~~~~---------~~~F~~~l~~y~~s 249 (687)
|-..+=+.|=-.|+.++|.+|-++++.++. .+.|..-+.+|++.
T Consensus 676 pR~lVLa~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~ 728 (1265)
T KOG1920|consen 676 PRILVLAKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQ 728 (1265)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhcc
Confidence 344577778888999999999999998873 25677777777754
No 12
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.99 E-value=28 Score=40.75 Aligned_cols=146 Identities=17% Similarity=0.055 Sum_probs=81.8
Q ss_pred chHHHHHHhhcHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhhHHH------HHHHHHhhhcCCccccccccccchhHH
Q 039467 368 VYPYVLLLSIQLLPAVLYLSKESGDEGYNIDAAHISIVLADHGMALE------YYAQAAAAVGGGQLSWTGRANVDQQRQ 441 (687)
Q Consensus 368 ~yf~vLlLsgqFE~AI~~L~~~~~~~~~~vdAVH~AIaL~~~gla~~------Y~~~~~~~~~~~~l~~~~r~~~d~~~~ 441 (687)
+=||.+.|-|.||.|..-|-+. . ...+.-+.||==.+-++.-|++ |-..++..+|...+.+-+- .+.
T Consensus 591 leyqt~vmrrd~~~a~~vLp~I-~-k~~rt~va~Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la-----~e~ 663 (794)
T KOG0276|consen 591 LEYQTLVLRRDLEVADGVLPTI-P-KEIRTKVAHFLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLA-----VEA 663 (794)
T ss_pred HHHHHHhhhccccccccccccC-c-hhhhhhHHhHhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHH-----Hhh
Confidence 5578999999999999977766 1 3455556666444444433332 1111222222111110000 001
Q ss_pred HHHHHHHHHHHHHHhhcCcceeec--ccCCCCCCccccc--cCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHhhchHH
Q 039467 442 KSLMLKQLLTELLLRDGGIYLLLG--SRGAGEEGELGRY--ITDLKARQQFLLEAAGQCQEAGLYDKSIELQKRVGAFSM 517 (687)
Q Consensus 442 ~~~~~~~~l~eLvletref~~LLG--~dG~r~~G~I~~~--l~d~~~~~~~i~~aA~~ae~~Gr~~dAi~LY~La~~yd~ 517 (687)
.+.+-+..|.++.+...+|.+--. ..+.--.|++--+ ..+ .+.+..+|..|++.|+..-|..-|.+.|+++.
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~----~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~ 739 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGN----AEGLAVLASLAKKQGKNNLAFLAYFLSGDYEE 739 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCC----hhHHHHHHHHHHhhcccchHHHHHHHcCCHHH
Confidence 122345667777766666543211 0122222332211 112 23466799999999999999999999999999
Q ss_pred HHHHHHH
Q 039467 518 ALDTINK 524 (687)
Q Consensus 518 vl~lln~ 524 (687)
.++++-+
T Consensus 740 C~~lLi~ 746 (794)
T KOG0276|consen 740 CLELLIS 746 (794)
T ss_pred HHHHHHh
Confidence 8888743
No 13
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=39.34 E-value=35 Score=29.30 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=22.0
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHhhch
Q 039467 489 LLEAAGQCQEAGLYDKSIELQKRVGAF 515 (687)
Q Consensus 489 i~~aA~~ae~~Gr~~dAi~LY~La~~y 515 (687)
+..-|.++|..|++++|+.+|.-|=++
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456889999999999999998755433
No 14
>PF12110 Nup96: Nuclear protein 96; InterPro: IPR021967 Nup96 (often known by the name of its yeast homologue Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the nuclear pore complex between the inner and outer nuclear membranes. Nup96 is predicted to be an alpha helical solenoid. The interaction between Nup96 and Sec13 is the point of curvature in the heptameric complex [], [].; PDB: 3BG1_C 3BG0_F 3IKO_B.
Probab=38.94 E-value=43 Score=35.85 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHhhchHHHHHHHHHHHHHHHhhh
Q 039467 486 QQFLLEAAGQCQEAGLYDKSIELQKRVGAFSMALDTINKCLSEAIFAM 533 (687)
Q Consensus 486 ~~~i~~aA~~ae~~Gr~~dAi~LY~La~~yd~vl~lln~~Ls~~ls~~ 533 (687)
..+...=|.+.+..|.+..||-.+.-..+-...-..|-.+|+.-+...
T Consensus 209 d~lt~~fa~QLe~~glw~~AlfVllhl~d~~~r~~~ir~ll~r~~~~~ 256 (290)
T PF12110_consen 209 DQLTLSFASQLESLGLWEWALFVLLHLSDDSSREQAIRELLARHIPEL 256 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHT-S-HHHHHHHHHHHHHHCTGGG
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc
Confidence 335566888899999999999988888888887788888888777654
No 15
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.45 E-value=2e+02 Score=28.20 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=45.5
Q ss_pred CCCCcHHHHHHHHHhhhhhccCCCCcccHHHHHHHHHHhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039467 86 GLPFKPATAFKGAYESLAIESSSGKSVNIQKIWHLLQTMMGEHATVQQTASRKMSLVIGARRHLEWGHEKYIMDTIQ 162 (687)
Q Consensus 86 ~~~~~l~~~f~~a~~~~~~~~~~~~~~~i~~~W~~l~~~~~e~~~~~~~~~~~~~iv~gsr~yLE~qf~~~v~~~I~ 162 (687)
|.||||...+.+++..+-.+..+..+......-..+..++-|.+...-++.+-+.++..+-...-..+++-+-+++.
T Consensus 75 GkpyPWt~~~L~aa~el~ee~eeLs~deke~~~~sl~dL~~d~PkT~vA~~rfKk~~~K~g~~v~~~~~dIlVdv~S 151 (158)
T PF10083_consen 75 GKPYPWTENALEAANELIEEDEELSPDEKEQFKESLPDLTKDTPKTKVAATRFKKILSKAGSIVGDAIRDILVDVAS 151 (158)
T ss_pred CCCCchHHHHHHHHHHHHHHhhcCCHHHHHHHHhhhHHHhhcCCccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 78999999999988765433323333233445556777776665544444444455555555555555555555543
No 16
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=35.02 E-value=46 Score=28.58 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHhhc
Q 039467 489 LLEAAGQCQEAGLYDKSIELQKRVGA 514 (687)
Q Consensus 489 i~~aA~~ae~~Gr~~dAi~LY~La~~ 514 (687)
...-|.+||..|++++||-.|+-|-+
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45688999999999999999876543
No 17
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=33.43 E-value=44 Score=40.61 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcC-ChhhHHHHHHHhhchHHHHHHHH
Q 039467 489 LLEAAGQCQEAG-LYDKSIELQKRVGAFSMALDTIN 523 (687)
Q Consensus 489 i~~aA~~ae~~G-r~~dAi~LY~La~~yd~vl~lln 523 (687)
++.||+-.|+.| .+..||.|||-||-+.+|+++-=
T Consensus 1024 ~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF 1059 (1416)
T KOG3617|consen 1024 LVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAF 1059 (1416)
T ss_pred HHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHH
Confidence 457899999998 99999999999999999998754
No 18
>PF05044 HPD: Homeo-prospero domain; InterPro: IPR007738 The homeobox gene Prox1 is expressed in a subpopulation of endothelial cells that, after budding from veins, gives rise to the mammalian lymphatic system []. Prox1 has been found to be an early specific marker for the developing liver and pancreas in the mammalian foregut endoderm []. This family contains an atypical homeobox domain.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0007275 multicellular organismal development, 0005634 nucleus; PDB: 2LMD_A 1XPX_A 1MIJ_A.
Probab=32.99 E-value=82 Score=30.34 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=17.3
Q ss_pred cch-HHHHHHHHHhCCccchhhhhcCchhhhcc
Q 039467 280 YDK-KKLLLYAIISGSRRQIDRLLRDLPTLFST 311 (687)
Q Consensus 280 ~DP-yK~AvY~iig~cd~~~~~~~~~~~~V~~t 311 (687)
.|| .|+++||||++-| ..+|+.+.+
T Consensus 125 ~dpsWKK~IYKvI~kLD-------~~vPe~FK~ 150 (158)
T PF05044_consen 125 SDPSWKKPIYKVISKLD-------DPVPEFFKS 150 (158)
T ss_dssp CSTCCCHHHHHHHHCC--------SS--GGCC-
T ss_pred CCccccHHHHHHHHHcc-------CcccHhhcC
Confidence 466 9999999999988 457887654
No 19
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=32.53 E-value=38 Score=42.93 Aligned_cols=77 Identities=19% Similarity=0.244 Sum_probs=50.8
Q ss_pred ccHHHHHHHHHhcCccccccCCCCCcchHHHHHHhhcHHHHHH----------HHhh---------ccCCCCCcchHHHH
Q 039467 342 YSLDDLQVYLNKFDPSYYTKNGKDPLVYPYVLLLSIQLLPAVL----------YLSK---------ESGDEGYNIDAAHI 402 (687)
Q Consensus 342 ytL~~LQ~~i~~~Ge~~F~~~~~~p~~yf~vLlLsgqFE~AI~----------~L~~---------~~~~~~~~vdAVH~ 402 (687)
|.-..|-+....-|+=||++.+..+. +.++--||+|+.|.. |+.- .....-+++|.+|+
T Consensus 646 ~~~~al~k~~~~~~~~~fnp~~f~s~--~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~dgq~l 723 (1236)
T KOG1839|consen 646 YATKALVKLVAVCGPYGFNPAGFYSL--AVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPDTMKSYGDLSVFPYDGQHL 723 (1236)
T ss_pred HHHHHHHHHHhhhcccccCccccccC--ceEecCccccchhhhhhHhHHHHHHHHhccccchhHHhccccceeeecccHH
Confidence 44556666666677777777655443 445666788776653 3332 10112467999999
Q ss_pred HHHHHHhhhHHHHHHHHH
Q 039467 403 SIVLADHGMALEYYAQAA 420 (687)
Q Consensus 403 AIaL~~~gla~~Y~~~~~ 420 (687)
+.||+|.|.++.|...++
T Consensus 724 ~~aL~~~g~n~ryLg~~~ 741 (1236)
T KOG1839|consen 724 ELALHYVGRNLRYLGKTC 741 (1236)
T ss_pred HHHHHHhhHHHHHhhccc
Confidence 999999999998886443
No 20
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=30.76 E-value=83 Score=22.95 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=20.7
Q ss_pred HHHHHHHHHHcCChhhHHHHHH--HhhchH
Q 039467 489 LLEAAGQCQEAGLYDKSIELQK--RVGAFS 516 (687)
Q Consensus 489 i~~aA~~ae~~Gr~~dAi~LY~--La~~yd 516 (687)
+.-.|-.+-.+|++++|+.+|+ ++--+|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld 33 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALD 33 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 4456788899999999999966 765543
No 21
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=28.55 E-value=1.9e+02 Score=32.56 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=26.8
Q ss_pred HHHhCCHHHHHHHHhCCCcccCCCCChHHHHHHh
Q 039467 591 MARSGHYLDALREVAKLPFLPFDPRVPDAMVDVF 624 (687)
Q Consensus 591 ~~~~~~~~~AL~~i~~L~ilPl~~~~v~~~a~~f 624 (687)
+...|+|+.||-.++.++++|......-.....+
T Consensus 278 Yi~~~d~e~ALlaLNs~Pm~~~~~k~~~~~~~p~ 311 (395)
T PF09295_consen 278 YIQLGDFENALLALNSCPMLTYKDKYKLKRPVPA 311 (395)
T ss_pred HHhcCCHHHHHHHHhcCcCCCCccchhhhcCCCc
Confidence 5689999999999999999998876654444333
No 22
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=28.00 E-value=2.3e+02 Score=30.98 Aligned_cols=33 Identities=27% Similarity=0.273 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHhhcccCCChHHHHHHHhhC
Q 039467 655 SLRAMRAKIANFLANNMNQNWPRDLYERVARSL 687 (687)
Q Consensus 655 ~~~~l~~~~~~~~ag~i~y~~P~~~~~~la~~~ 687 (687)
+...-|+.+++..+|.+.--=|+++..-|.++|
T Consensus 136 sKEkrRa~IAQ~ls~EV~VVppSRLlaLlGQaL 168 (508)
T KOG0275|consen 136 SKEKRRAVIAQALSGEVHVVPPSRLLALLGQAL 168 (508)
T ss_pred hHHHHHHHHHHHhcCceEEcChHHHHHHHHHHh
Confidence 445556777777899999888999988887765
No 23
>PLN03077 Protein ECB2; Provisional
Probab=27.86 E-value=1.2e+03 Score=28.59 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcc--CCccHHHHHHHHHhCC
Q 039467 212 QQIYFCLRTGYYDEARNVALSSR--ASNQFAPLLTEWINTG 250 (687)
Q Consensus 212 a~IyYlLR~G~~~eA~e~~~~~~--~~~~F~~~l~~y~~s~ 250 (687)
++|--+.|||++++|..+...-. +...+-+.+..|+..+
T Consensus 227 ~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g 267 (857)
T PLN03077 227 ALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENG 267 (857)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCC
Confidence 56777899999999999998764 2457788888888654
No 24
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=27.51 E-value=20 Score=33.38 Aligned_cols=31 Identities=29% Similarity=0.617 Sum_probs=28.9
Q ss_pred HHHHHHHHcCChhhHHHHHHHhhchHHHHHH
Q 039467 491 EAAGQCQEAGLYDKSIELQKRVGAFSMALDT 521 (687)
Q Consensus 491 ~aA~~ae~~Gr~~dAi~LY~La~~yd~vl~l 521 (687)
.|++.|++.|.++.|+.||.-.|+|++|+++
T Consensus 75 ~~~~~c~~~~l~~~a~~Ly~~~~~~~~al~i 105 (143)
T PF00637_consen 75 KALRLCEKHGLYEEAVYLYSKLGNHDEALEI 105 (143)
T ss_dssp HHHHHHHTTTSHHHHHHHHHCCTTHTTCSST
T ss_pred HHHHHHHhcchHHHHHHHHHHcccHHHHHHH
Confidence 4899999999999999999999999998884
No 25
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=27.23 E-value=1.6e+02 Score=33.62 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHhhchHHHHHHHHH
Q 039467 488 FLLEAAGQCQEAGLYDKSIELQKRVGAFSMALDTINK 524 (687)
Q Consensus 488 ~i~~aA~~ae~~Gr~~dAi~LY~La~~yd~vl~lln~ 524 (687)
-+.+.|..|+.+|.+.-|..-+.+.|++++-++++.+
T Consensus 391 ~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 391 KLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4666889999999999999999999999998888764
No 26
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=24.01 E-value=92 Score=26.03 Aligned_cols=32 Identities=38% Similarity=0.556 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHhhchHHHHHHHHHHH
Q 039467 489 LLEAAGQCQEAGLYDKSIELQKRVGAFSMALDTINKCL 526 (687)
Q Consensus 489 i~~aA~~ae~~Gr~~dAi~LY~La~~yd~vl~lln~~L 526 (687)
++.-|..+|+.|++++|+.+|.- +++.+...+
T Consensus 9 l~~~Av~~D~~g~~~~Al~~Y~~------a~e~l~~~~ 40 (75)
T cd02656 9 LIKQAVKEDEDGNYEEALELYKE------ALDYLLQAL 40 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHHh
Confidence 45677999999999999999764 444454444
No 27
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=23.70 E-value=87 Score=26.80 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHh
Q 039467 489 LLEAAGQCQEAGLYDKSIELQKRV 512 (687)
Q Consensus 489 i~~aA~~ae~~Gr~~dAi~LY~La 512 (687)
++.-|.++|..|++++|+.+|.-|
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~a 32 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEG 32 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH
Confidence 456679999999999999997644
No 28
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=23.45 E-value=2.6e+02 Score=22.91 Aligned_cols=38 Identities=26% Similarity=0.217 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHhhchHHHHHHH
Q 039467 485 RQQFLLEAAGQCQEAGLYDKSIELQKRVGAFSMALDTI 522 (687)
Q Consensus 485 ~~~~i~~aA~~ae~~Gr~~dAi~LY~La~~yd~vl~ll 522 (687)
+++...+||.+|-.+|..+.|-..--.+..|+.+|+..
T Consensus 7 R~~~yk~Aa~~AK~~gd~~kAr~~~R~~K~~~~~I~~~ 44 (59)
T smart00685 7 RQEQYKQAALQAKRAGDEEKARRHLRIAKQFDDAIKAA 44 (59)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhHHHHHHHH
Confidence 44455679999999999999999888888888776543
No 29
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=22.50 E-value=78 Score=21.40 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=18.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhc
Q 039467 212 QQIYFCLRTGYYDEARNVALSS 233 (687)
Q Consensus 212 a~IyYlLR~G~~~eA~e~~~~~ 233 (687)
.++=|++|+|+.+.|..+.++.
T Consensus 9 lI~~yL~~~g~~~ta~~l~~e~ 30 (34)
T smart00667 9 LILEYLLRNGYEETAETLQKES 30 (34)
T ss_pred HHHHHHHHcCHHHHHHHHHHHh
Confidence 4666999999999998887764
No 30
>PLN03218 maturation of RBCL 1; Provisional
Probab=22.23 E-value=4.5e+02 Score=33.64 Aligned_cols=40 Identities=13% Similarity=-0.024 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC------CccHHHHHHHHHhCC
Q 039467 211 WQQIYFCLRTGYYDEARNVALSSRA------SNQFAPLLTEWINTG 250 (687)
Q Consensus 211 Wa~IyYlLR~G~~~eA~e~~~~~~~------~~~F~~~l~~y~~s~ 250 (687)
-.+|..|.++|++++|.++.++-.. ...|...+..|...+
T Consensus 723 N~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G 768 (1060)
T PLN03218 723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 3778888899999999999875421 235777777777544
No 31
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=22.00 E-value=90 Score=35.44 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHhC-CCcccCCC
Q 039467 584 AILSVHKMARSGHYLDALREVAK-LPFLPFDP 614 (687)
Q Consensus 584 ~l~~f~~~~~~~~~~~AL~~i~~-L~ilPl~~ 614 (687)
+|-..|+++.+|++.+|++.+.+ |..||+..
T Consensus 207 ~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~v 238 (422)
T PF06957_consen 207 RLKEGYKLFTAGKFEEAIEIFRSILHSIPLLV 238 (422)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheee
Confidence 45678999999999999998773 45555543
No 32
>PF05534 HicB: HicB family; InterPro: IPR008651 This family consists of several bacterial HicB related proteins. The function of HicB is unknown although it is thought to be involved in pilus formation. It has been speculated that HicB performs a function antagonistic to that of pili and yet is necessary for invasion of certain niches [].
Probab=21.15 E-value=48 Score=26.16 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=17.3
Q ss_pred HHhhcccCCChHHHHHHHh
Q 039467 667 LANNMNQNWPRDLYERVAR 685 (687)
Q Consensus 667 ~ag~i~y~~P~~~~~~la~ 685 (687)
|.|.+.-|+|+++|++++.
T Consensus 16 ~sg~~~lRi~~~Lh~~l~~ 34 (51)
T PF05534_consen 16 YSGKFNLRIPPELHRALAE 34 (51)
T ss_pred CCCceeeeCCHHHHHHHHH
Confidence 6899999999999999975
No 33
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=20.37 E-value=3.1e+02 Score=28.81 Aligned_cols=121 Identities=16% Similarity=0.184 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHHHHHc-CChhhHHHHHHHhh---------------------------chHHHHHHHHHHHHHHHh
Q 039467 480 TDLKARQQFLLEAAGQCQEA-GLYDKSIELQKRVG---------------------------AFSMALDTINKCLSEAIF 531 (687)
Q Consensus 480 ~d~~~~~~~i~~aA~~ae~~-Gr~~dAi~LY~La~---------------------------~yd~vl~lln~~Ls~~ls 531 (687)
.+.....+...++|...++. |++++|+.+|+-|- +|+.|++++-+.....+.
T Consensus 108 G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 108 GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Q ss_pred hhcCCCCCccccchhHH--------HHHHHHHHHHhcCCCcchhhhHHHHhHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Q 039467 532 AMSRGRLDGESQTASLI--------HSGNEILEMEKYYPEVSLHEREQVLEQQTVLRQLEAILSVHKMARSGHYLDALRE 603 (687)
Q Consensus 532 ~~~~~~~~~~~~~~~l~--------~~a~~i~~~y~~~~~~s~~~~~~~~~~~~~l~~Ll~l~~f~~~~~~~~~~~AL~~ 603 (687)
.........+.-...++ ..|....+.|... ..+-..+..+ ..|..|++.++.--...++.|+..
T Consensus 188 ~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~-~~~F~~s~E~-------~~~~~l~~A~~~~D~e~f~~av~~ 259 (282)
T PF14938_consen 188 NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ-DPSFASSREY-------KFLEDLLEAYEEGDVEAFTEAVAE 259 (282)
T ss_dssp HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT-STTSTTSHHH-------HHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCCCcHHH-------HHHHHHHHHHHhCCHHHHHHHHHH
Q ss_pred HhCCC
Q 039467 604 VAKLP 608 (687)
Q Consensus 604 i~~L~ 608 (687)
..++.
T Consensus 260 ~d~~~ 264 (282)
T PF14938_consen 260 YDSIS 264 (282)
T ss_dssp HTTSS
T ss_pred HcccC
No 34
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=20.12 E-value=1.4e+02 Score=20.01 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=18.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhc
Q 039467 212 QQIYFCLRTGYYDEARNVALSS 233 (687)
Q Consensus 212 a~IyYlLR~G~~~eA~e~~~~~ 233 (687)
++|.-|.++|+.+.|.++.+.-
T Consensus 6 ~ll~a~~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 6 ALLRACAKAGDPDAALQLFDEM 27 (34)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4678899999999999888753
No 35
>PF12854 PPR_1: PPR repeat
Probab=20.08 E-value=1.4e+02 Score=21.10 Aligned_cols=23 Identities=26% Similarity=0.148 Sum_probs=18.6
Q ss_pred cH-HHHHHHHhcCCHHHHHHHHHh
Q 039467 210 TW-QQIYFCLRTGYYDEARNVALS 232 (687)
Q Consensus 210 vW-a~IyYlLR~G~~~eA~e~~~~ 232 (687)
+| .+|--+.|+|.+++|.++..+
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh
Confidence 44 467778899999999998864
No 36
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=20.02 E-value=1.2e+02 Score=25.27 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHhh
Q 039467 489 LLEAAGQCQEAGLYDKSIELQKRVG 513 (687)
Q Consensus 489 i~~aA~~ae~~Gr~~dAi~LY~La~ 513 (687)
++.-|..+|+.|++++|+.+|.-|-
T Consensus 11 li~~Av~~d~~g~~~eAl~~Y~~a~ 35 (77)
T smart00745 11 LISKALKADEAGDYEEALELYKKAI 35 (77)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556799999999999999976543
Done!