Query 039467
Match_columns 687
No_of_seqs 160 out of 228
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 17:00:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039467.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039467hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qx5_A Nucleoporin NIC96; mRNA 100.0 4E-128 1E-132 1109.4 49.8 572 61-686 26-657 (661)
2 3iko_C Nucleoporin NUP84; NPC, 95.7 0.013 4.5E-07 65.0 7.1 238 68-324 11-294 (460)
3 3mkq_A Coatomer beta'-subunit; 77.0 2.1 7.1E-05 49.0 5.3 75 446-525 683-762 (814)
4 1xi4_A Clathrin heavy chain; a 61.7 7 0.00024 49.0 5.4 143 370-531 1082-1242(1630)
5 3vtx_A MAMA; tetratricopeptide 40.0 96 0.0033 27.4 8.4 24 366-389 5-31 (184)
6 2ko4_A Mediator of RNA polymer 38.9 19 0.00067 29.9 2.9 30 203-232 31-61 (81)
7 1mij_A Protein prospero; homeo 32.8 61 0.0021 29.6 5.3 25 280-311 126-151 (152)
8 3bg1_B Nucleoporin NUP145; NPC 30.8 1.4E+02 0.0048 32.6 9.0 75 210-294 180-254 (442)
9 2v6y_A AAA family ATPase, P60 28.2 46 0.0016 27.6 3.6 25 489-513 14-38 (83)
10 2w2u_A Hypothetical P60 katani 27.0 50 0.0017 27.5 3.6 25 489-513 22-46 (83)
11 2pm7_A Protein WEB1, protein t 25.3 89 0.003 33.6 6.1 45 484-528 246-290 (399)
12 4a5x_A MITD1, MIT domain-conta 25.1 56 0.0019 27.3 3.6 24 489-512 19-42 (86)
13 3mzk_B Protein transport prote 23.6 5.4E+02 0.018 27.9 12.0 53 371-423 331-386 (441)
14 2pl2_A Hypothetical conserved 23.4 2.9E+02 0.01 25.5 8.9 131 371-527 13-179 (217)
15 3mv2_A Coatomer subunit alpha; 21.8 43 0.0015 35.1 2.6 31 584-614 117-148 (325)
16 3sjr_A Uncharacterized protein 21.8 1.3E+02 0.0045 28.1 5.6 83 515-610 63-149 (175)
17 2nr5_A Hypothetical protein SO 21.7 28 0.00094 26.6 0.8 9 310-318 54-62 (67)
18 1wfd_A Hypothetical protein 15 21.4 72 0.0024 27.0 3.6 26 489-514 18-43 (93)
19 2l9w_A U4/U6 snRNA-associated- 20.8 32 0.0011 30.6 1.2 38 148-188 2-46 (117)
20 2v6x_A Vacuolar protein sortin 20.5 78 0.0027 26.1 3.6 25 489-513 16-40 (85)
21 2cpt_A SKD1 protein, vacuolar 20.3 70 0.0024 28.4 3.4 27 489-515 21-47 (117)
22 2lmd_A Prospero homeobox prote 20.2 53 0.0018 30.6 2.5 25 280-311 139-164 (174)
No 1
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=100.00 E-value=4.2e-128 Score=1109.37 Aligned_cols=572 Identities=21% Similarity=0.330 Sum_probs=453.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhhhhhccCCCCcccHHHHHHHHHHhhcCCcchhhhHHHHHH
Q 039467 61 NKPLLEKKATVYAEVVKNLNNARQQGLPFKPATAFKGAYESLAIESSSGKSVNIQKIWHLLQTMMGEHATVQQTASRKMS 140 (687)
Q Consensus 61 ~~~~l~~k~~~Ya~~V~~lN~~r~~~~~~~l~~~f~~a~~~~~~~~~~~~~~~i~~~W~~l~~~~~e~~~~~~~~~~~~~ 140 (687)
.++.|++||++||++|++||++|++|.+||++++|++++++++ +.++.+|.|+|++|++|+ +++++
T Consensus 26 ~~~~l~~k~~~Ya~~I~~~N~~r~~~~~~~l~~~f~~~~~~~~----~~~~~~l~d~W~~l~~m~----------~~~~~ 91 (661)
T 2qx5_A 26 ENNILREKFENYARIVFQFNNSRQANGNFDIANEFISILSSAN----GTRNAQLLESWKILESMK----------SKDIN 91 (661)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCC----SHHHHHHHHHHHHHHTTT----------TSCCC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcC----CcchhHHHHHHHHHHHHH----------HHHHH
Confidence 4669999999999999999999999999999999999988653 445679999999999997 36779
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhhcCCCCCchHHHHHHHHHhhccCC-cccccCCcccCCCCCCCcHHHHHHHHh
Q 039467 141 LVIGARRHLEWGHEKYIMDTIQSHPAQAALGGVVGNLQRVRAFLRIRLRDYG-VLDFDIGDTRRQPPVDTTWQQIYFCLR 219 (687)
Q Consensus 141 iv~gsr~yLE~qf~~~v~~~I~~~p~~A~lGG~P~~~~~V~afl~v~~~~~g-~~~~~~~~~~~~~p~~~vWa~IyYlLR 219 (687)
+|+|||+|||+||++||+++|.+||.+ |+|+++++|+|||++++++++ .|+.+.++.+++.| +||+||||||
T Consensus 92 ~v~gar~~LE~qf~~~~~~~i~~n~~~----G~p~~~~~V~afv~~~~~~~~~~~~~~~~~~v~g~p---~Wa~IyY~LR 164 (661)
T 2qx5_A 92 IVEVGKQYLEQQFLQYTDNLYKKNMNE----GLATNVNKIKSFIDTKLKKADKSWKISNLTVINGVP---IWALIFYLLR 164 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC----SCSCHHHHHHHHHHHSSBCSSSCBSSTTCCEETTEE---HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCc----CCCChHHHHHHHHHHHhcccCCccCCCcccccCCcc---cHHHHHHHHh
Confidence 999999999999999999999999988 999999999999999998776 46656666666666 9999999999
Q ss_pred cCCHHHHHHHHHhccC-----CccHHHHHHHHHhC-CCCCCHHHHHHhhHHHHHhhhhcccCCCCccchHHHHHHHHHhC
Q 039467 220 TGYYDEARNVALSSRA-----SNQFAPLLTEWINT-GGMVPPEIAAAASEECDKMLRMGDRVGRAAYDKKKLLLYAIISG 293 (687)
Q Consensus 220 ~G~~~eA~e~~~~~~~-----~~~F~~~l~~y~~s-~~~L~~~~~~~~~~e~~q~~r~~d~~~~~~~DPyK~AvY~iig~ 293 (687)
||+++||++++++++. +++|++|+++|+++ +++||++++++++.||+|++|+ ....||||+|||||||+
T Consensus 165 ~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s~~~~L~~~~~~~l~~ey~~~~r~-----~~~~DpyK~AvY~Iig~ 239 (661)
T 2qx5_A 165 AGLIKEALQVLVENKANIKKVEQSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQHIKS-----SLDGDPYRLAVYKLIGR 239 (661)
T ss_dssp TTCHHHHHHHHHHTGGGC-----CHHHHHHHC-----------------------------------CHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHhc
Confidence 9999999999999864 27999999999966 4799999999999999999884 23489999999999999
Q ss_pred CccchhhhhcCchhhhcchhHHHHhhhhccccCCCCCCcccccCCCCcccHHHHHHHHHhcCccccccCCCCCcchHHHH
Q 039467 294 SRRQIDRLLRDLPTLFSTIEDFLWFKLSAIRDVPSEAPSVVLSDGLAPYSLDDLQVYLNKFDPSYYTKNGKDPLVYPYVL 373 (687)
Q Consensus 294 cd~~~~~~~~~~~~V~~tiEDwLWlqL~lvre~~~~~~~~~~~~~~~~ytL~~LQ~~i~~~Ge~~F~~~~~~p~~yf~vL 373 (687)
||++ ++++|+|+.||||||||||+++|+++.++++ +.+.|||++||+.|.+|||+||++ +||++|
T Consensus 240 cD~~----~~~~~~v~~siED~LWl~L~lvre~~~~~~~-----~~e~ytL~~LQ~~I~~yGe~~F~~------lYf~vL 304 (661)
T 2qx5_A 240 CDLS----RKNIPAVTLSIEDWLWMHLMLIKEKDAENDP-----VYERYSLEDFQNIIISYGPSRFSN------YYLQTL 304 (661)
T ss_dssp CCGG----GCCCGGGCCSHHHHHHHHHHTCCC---------------CCCHHHHHHHHHHHCGGGGTT------CHHHHH
T ss_pred cccc----ccchHHHhccHHHHHHHHHHhccCCCccccc-----ccccccHHHHHHHHHHhhhhhhhh------HHHHHH
Confidence 9874 5778899999999999999999998764422 236899999999999999999975 799999
Q ss_pred HHhhcHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhhHH---------------------HHHH------HHHhhhcCC
Q 039467 374 LLSIQLLPAVLYLSKESGDEGYNIDAAHISIVLADHGMAL---------------------EYYA------QAAAAVGGG 426 (687)
Q Consensus 374 lLsgqFE~AI~~L~~~~~~~~~~vdAVH~AIaL~~~gla~---------------------~Y~~------~~~~~~~~~ 426 (687)
+||||||+||+||+++ +++|||||||||+|||++- ..|+ ....|+.|.
T Consensus 305 lLtgqFE~AI~~L~~~-----~~vdAVH~AIaL~~~gLL~~~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~Al~Y~ 379 (661)
T 2qx5_A 305 LLSGLYGLAIDYTYTF-----SEMDAVHLAIGLASLKLFKIDSSTRLTKKPKRDIRFANILANYTKSFRYSDPRVAVEYL 379 (661)
T ss_dssp HHTTCHHHHHHHHHTT-----CHHHHHHHHHHHHHTTC-----------------CHHHHHHHHHTTTTTTCHHHHHHHH
T ss_pred HHHhhHHHHHHHHHhc-----CchhHHHHHHHHHHcCCccCCCcccccCCCcccccHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 9999999999999997 9999999999999999521 1111 111122221
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHhhcCcceeecc---cCCCCCCccccccCCh-----HH-HHHHHHHHHHHHH
Q 039467 427 QLSWTGRANVDQQRQKSLMLKQLLTELLLRDGGIYLLLGS---RGAGEEGELGRYITDL-----KA-RQQFLLEAAGQCQ 497 (687)
Q Consensus 427 ~l~~~~r~~~d~~~~~~~~~~~~l~eLvletref~~LLG~---dG~r~~G~I~~~l~d~-----~~-~~~~i~~aA~~ae 497 (687)
|++|.+ ++..|.+ +||+||+|||+|||+|++|||+ ||+|++|+|++|.+++ ++ .++++.+||++|+
T Consensus 380 ---~li~l~-~g~~~~~-~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~~~aA~~ae 454 (661)
T 2qx5_A 380 ---VLITLN-EGPTDVE-LCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTITEQAARRAD 454 (661)
T ss_dssp ---HGGGGS-CCHHHHH-HHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHhcc-CCchHHH-HHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHHHHHHHHHHHH
Confidence 233333 2233566 8899999999999999999994 9999999999987632 22 4556678999999
Q ss_pred HcCChhhHHHHHHHhhchHHHHHHHHHHHHHHHhhhc--CCCCCcc-ccchhHHHHHHHHHHHHhcCCCcchhhhHHHHh
Q 039467 498 EAGLYDKSIELQKRVGAFSMALDTINKCLSEAIFAMS--RGRLDGE-SQTASLIHSGNEILEMEKYYPEVSLHEREQVLE 574 (687)
Q Consensus 498 ~~Gr~~dAi~LY~La~~yd~vl~lln~~Ls~~ls~~~--~~~~~~~-~~~~~l~~~a~~i~~~y~~~~~~s~~~~~~~~~ 574 (687)
++|+++|||+||||||+||+||+++|++||++|++++ .+....+ ...++++.+|++|.++|..++.++.+.+.+..
T Consensus 455 ~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~- 533 (661)
T 2qx5_A 455 EDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHVKNK- 533 (661)
T ss_dssp HTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCHHHH-
T ss_pred HCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhccHHHH-
Confidence 9999999999999999999999999999999999875 3322222 12467999999999999987654444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhCCCcccCC-CCChHHHHHHhccCChhHHHhhhHHHHHHHHHhHhhhcc-
Q 039467 575 QQTVLRQLEAILSVHKMARSGHYLDALREVAKLPFLPFD-PRVPDAMVDVFQSLSPHVQACVPDLLRVALTCLDNVTDT- 652 (687)
Q Consensus 575 ~~~~l~~Ll~l~~f~~~~~~~~~~~AL~~i~~L~ilPl~-~~~v~~~a~~f~~l~~~V~~~iP~lLl~~m~cl~~~~~~- 652 (687)
.+|.+|++|++||++||+|+|++||++|++|+|||++ ..++++||++|+++|++|++|+|+||+|+|+||+++.++
T Consensus 534 --~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~llPl~d~~~i~~~a~~f~~l~~~V~~~lP~lLl~aM~~l~~~~~~l 611 (661)
T 2qx5_A 534 --EICMLLLNISSIRELYFNKQWQETLSQMELLDLLPFSDELSARKKAQDFSNLDDNIVKNIPNLLIITLSCISNMIHIL 611 (661)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSCSCC-----CHHHHHHGGGSCHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCCCchHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556799999999999999999999999999999999 455679999999999999999999999999999998643
Q ss_pred ------ch----hHHHHHHHHHHH--HHhhcccCCChHHHHHHHhh
Q 039467 653 ------DG----SLRAMRAKIANF--LANNMNQNWPRDLYERVARS 686 (687)
Q Consensus 653 ------~~----~~~~l~~~~~~~--~ag~i~y~~P~~~~~~la~~ 686 (687)
++ .++.+|++++++ |||||+||||+++|++|+|+
T Consensus 612 ~~~~~~~~~~~~~~~~lr~~ak~l~~~Ag~i~yrmP~~~~~~L~~l 657 (661)
T 2qx5_A 612 NESKYQSSTKGQQIDSLKNVARQCMIYAGMIQYRMPRETYSTLINI 657 (661)
T ss_dssp HSTTCCCTTHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHCC
T ss_pred hcCCCccchhHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 22 356899999998 99999999999999999985
No 2
>3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.20A {Saccharomyces cerevisiae} PDB: 3jro_C
Probab=95.73 E-value=0.013 Score=64.98 Aligned_cols=238 Identities=16% Similarity=0.162 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHHHh----cCCCCcHHHHHHHHHhhhh----hccCCCCc------ccHHHHHHHHHHhhcC----Cc
Q 039467 68 KATVYAEVVKNLNNARQ----QGLPFKPATAFKGAYESLA----IESSSGKS------VNIQKIWHLLQTMMGE----HA 129 (687)
Q Consensus 68 k~~~Ya~~V~~lN~~r~----~~~~~~l~~~f~~a~~~~~----~~~~~~~~------~~i~~~W~~l~~~~~e----~~ 129 (687)
-+.+||+++..|=.... ...||.|+..|...+.... .+.++.+. ..=...|++|..+... ..
T Consensus 11 ~~~~Fa~~L~~f~~~~~~~~~~~d~~~lv~~~~~i~~~~~~~~~~~~~~~~~~~~~~w~lE~~tW~Ll~~Ly~~R~~~~~ 90 (460)
T 3iko_C 11 RFTKFSDTLKEFKIEQNNEQNPIDPFNIIREFRSAAGQLALDLANSGDESNVISSKDWELEARFWHLVELLLVFRNADLD 90 (460)
T ss_dssp THHHHHHHHHHHHTTC-------CTHHHHHHHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcccCCccccCHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 47889999999933322 1358999999998874211 11111111 1123678888877621 11
Q ss_pred c-----h--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhh-cCCCCCchHHHHHHHHHhhcc-CCcccccCCc
Q 039467 130 T-----V--QQTASRKMSLVIGARRHLEWGHEKYIMDTIQSHPAQAA-LGGVVGNLQRVRAFLRIRLRD-YGVLDFDIGD 200 (687)
Q Consensus 130 ~-----~--~~~~~~~~~iv~gsr~yLE~qf~~~v~~~I~~~p~~A~-lGG~P~~~~~V~afl~v~~~~-~g~~~~~~~~ 200 (687)
. . .+.....+++...-...-|.+ -|.+=+..+..... -+..|+. ...+-+... -..+|||...
T Consensus 91 ~~~~~~~~y~S~~~~~~~l~~~d~~lre~~---lI~~WLE~~a~~~~~~~~l~~~-----~W~~T~~~g~v~~LDPDAp~ 162 (460)
T 3iko_C 91 LDEMELHPYNSRGLFEKKLMQDNKQLYQIW---IVMVWLKENTYVMERPKNVPTS-----KWLNSITSGGLKSCDLDFPL 162 (460)
T ss_dssp CCCCCCCTTSCHHHHHHHHHHHCHHHHHHH---HHHHHHHHTCCCCCCCSSCCSS-----TTHHHHHTSCCSCCSTTHHH
T ss_pred ccccccCCCCCHHHHHHHHHHhCHHHHHHH---HHHHHHHHhCcccccccccccc-----chhhhhhcCCCcccCCCccc
Confidence 0 0 112233444444444443433 13333444422111 1122211 111111110 0134555432
Q ss_pred ccCCCCCCC--------cHHHHHHHHhcCCHHHHHHHHHhccCCccHHHHHHHHHh-CCCCCCHHHH--------HHhhH
Q 039467 201 TRRQPPVDT--------TWQQIYFCLRTGYYDEARNVALSSRASNQFAPLLTEWIN-TGGMVPPEIA--------AAASE 263 (687)
Q Consensus 201 ~~~~~p~~~--------vWa~IyYlLR~G~~~eA~e~~~~~~~~~~F~~~l~~y~~-s~~~L~~~~~--------~~~~~ 263 (687)
=+++.|.++ +|..||-|+|||.+++|.+..++.... --..-|.-+.- .+..+..+.. .+-..
T Consensus 163 R~~~~~L~~~D~~~e~~l~~~i~~liR~G~~~eA~~lc~~~gq~-WRAasL~G~~~~~dP~~~~~~~~e~~~~~Gn~~r~ 241 (460)
T 3iko_C 163 RENTNVLDVKDKEEDHIFFKYIYELILAGAIDEALEEAKLSDNI-SICMILCGIQEYLNPVIDTQIANEFNTQQGIKKHS 241 (460)
T ss_dssp HSCGGGSCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH-HHHHHHHTTSBCBCTTTSGGGTTTCSSCBSBTTHH
T ss_pred ccCCCCCCcccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHcCCH-HHHHHHcccccccCcccccccccccccccCchhHH
Confidence 111112222 899999999999999999999976421 11111111110 0001111100 00111
Q ss_pred HHHHhh-hhcccCCCCccchHHHHHHHHHhCCccchhhhhcCchh-hhcchhHHHHhhhhccc
Q 039467 264 ECDKML-RMGDRVGRAAYDKKKLLLYAIISGSRRQIDRLLRDLPT-LFSTIEDFLWFKLSAIR 324 (687)
Q Consensus 264 e~~q~~-r~~d~~~~~~~DPyK~AvY~iig~cd~~~~~~~~~~~~-V~~tiEDwLWlqL~lvr 324 (687)
=|.+.. ++. ...+.|+|-+|||.+|+|.-. ...|. ++ |=||+||.+++.+-
T Consensus 242 LWkr~c~~lA---~~~~~~~yERAvY~~LsG~l~------s~~~~~~~-sWeD~Lway~n~ll 294 (460)
T 3iko_C 242 LWRRTVYSLS---QQAGLDPYERAIYSYLSGAIP------NQEVLQYS-DWESDLHIHLNQIL 294 (460)
T ss_dssp HHHHHHHHHH---HCSSSCHHHHHHHHHHHTSCC------CHHHHTTC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCCCHHHHHHHHHHhCCch------hhcccCCC-CHHHHHHHHHHHHH
Confidence 122221 111 145789999999999988642 12342 67 99999999987643
No 3
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=76.97 E-value=2.1 Score=48.95 Aligned_cols=75 Identities=15% Similarity=0.084 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhcCcce---eecccCCCCCCcc--ccccCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHhhchHHHHH
Q 039467 446 LKQLLTELLLRDGGIYL---LLGSRGAGEEGEL--GRYITDLKARQQFLLEAAGQCQEAGLYDKSIELQKRVGAFSMALD 520 (687)
Q Consensus 446 ~~~~l~eLvletref~~---LLG~dG~r~~G~I--~~~l~d~~~~~~~i~~aA~~ae~~Gr~~dAi~LY~La~~yd~vl~ 520 (687)
+++.+.++.++.++|+. .++.-| -..|+. .....+. +.+.++|+.|+.+|.+..|..+|..+|+++.|++
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~~~-d~~~l~~l~~~~~~~----~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~ 757 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTNAH-DLESLFLLHSSFNNK----EGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKD 757 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-CHHHHHHHHHHTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcc-ChhhhHHHHHHcCCH----HHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHH
Confidence 36788888888887743 222100 001111 0111122 2456789999999999999999999999999999
Q ss_pred HHHHH
Q 039467 521 TINKC 525 (687)
Q Consensus 521 lln~~ 525 (687)
+..++
T Consensus 758 ~~~~~ 762 (814)
T 3mkq_A 758 LLIKS 762 (814)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 87653
No 4
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=61.72 E-value=7 Score=48.99 Aligned_cols=143 Identities=17% Similarity=0.136 Sum_probs=76.3
Q ss_pred HHHHH-HhhcHHHHHHHHhhccCCCCCcchHHHHHHHHHHhh-----hHHHHHHHHHhhhcCCccccccccccchhHHHH
Q 039467 370 PYVLL-LSIQLLPAVLYLSKESGDEGYNIDAAHISIVLADHG-----MALEYYAQAAAAVGGGQLSWTGRANVDQQRQKS 443 (687)
Q Consensus 370 f~vLl-LsgqFE~AI~~L~~~~~~~~~~vdAVH~AIaL~~~g-----la~~Y~~~~~~~~~~~~l~~~~r~~~d~~~~~~ 443 (687)
..+|+ -.|.|++|++|.-+. ..+.||..+|-++.. -|+++|....-...+.....+.... |.
T Consensus 1082 ~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~l-----Gk- 1149 (1630)
T 1xi4_A 1082 VQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTS-----GN- 1149 (1630)
T ss_pred HHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-
Confidence 35566 789999999998765 457788877666654 3777774210000000000000000 00
Q ss_pred HHHHHHHHHHHHhhcCcc------eeec----ccCCCCCCccccccCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHhh
Q 039467 444 LMLKQLLTELLLRDGGIY------LLLG----SRGAGEEGELGRYITDLKARQQFLLEAAGQCQEAGLYDKSIELQKRVG 513 (687)
Q Consensus 444 ~~~~~~l~eLvletref~------~LLG----~dG~r~~G~I~~~l~d~~~~~~~i~~aA~~ae~~Gr~~dAi~LY~La~ 513 (687)
++-+-+.+...++.. .=+| +-| ....++.|+...+. .+ +...|..+++.|+++.|+.+|+.|+
T Consensus 1150 ---yEEAIeyL~mArk~~~e~~Idt~LafaYAKl~--rleele~fI~~~n~-ad-~~~iGd~le~eg~YeeA~~~Y~kA~ 1222 (1630)
T 1xi4_A 1150 ---WEELVKYLQMARKKARESYVETELIFALAKTN--RLAELEEFINGPNN-AH-IQQVGDRCYDEKMYDAAKLLYNNVS 1222 (1630)
T ss_pred ---HHHHHHHHHHHHhhcccccccHHHHHHHHhhc--CHHHHHHHHhCCCH-HH-HHHHHHHHHhcCCHHHHHHHHHhhh
Confidence 011112222222211 0022 111 11234445433321 22 3469999999999999999999999
Q ss_pred chHHHHHHHHHH--HHHHHh
Q 039467 514 AFSMALDTINKC--LSEAIF 531 (687)
Q Consensus 514 ~yd~vl~lln~~--Ls~~ls 531 (687)
+|.+...++.++ +.+++.
T Consensus 1223 ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1223 NFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHH
Confidence 888888777775 444443
No 5
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=39.97 E-value=96 Score=27.44 Aligned_cols=24 Identities=13% Similarity=-0.100 Sum_probs=16.6
Q ss_pred CcchHH---HHHHhhcHHHHHHHHhhc
Q 039467 366 PLVYPY---VLLLSIQLLPAVLYLSKE 389 (687)
Q Consensus 366 p~~yf~---vLlLsgqFE~AI~~L~~~ 389 (687)
+.+|+. +..-.|+|+.|+.++-+.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~a 31 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKV 31 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444543 355679999999997653
No 6
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=38.87 E-value=19 Score=29.88 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=22.5
Q ss_pred CCCCCCCcHHHHHHHHhcCCHH-HHHHHHHh
Q 039467 203 RQPPVDTTWQQIYFCLRTGYYD-EARNVALS 232 (687)
Q Consensus 203 ~~~p~~~vWa~IyYlLR~G~~~-eA~e~~~~ 232 (687)
|-|||.++|+.||-|.+.+.+. +++.++++
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~ 61 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKE 61 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3478888999999999999764 45555553
No 7
>1mij_A Protein prospero; homeodomain, DNA-binding domain, prospero domain, 4-helix bundle, transcription; HET: MSE; 2.05A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1xpx_A
Probab=32.81 E-value=61 Score=29.65 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=19.9
Q ss_pred cch-HHHHHHHHHhCCccchhhhhcCchhhhcc
Q 039467 280 YDK-KKLLLYAIISGSRRQIDRLLRDLPTLFST 311 (687)
Q Consensus 280 ~DP-yK~AvY~iig~cd~~~~~~~~~~~~V~~t 311 (687)
.|| .|+++||||++-| ..+|+++.+
T Consensus 126 ~~~sWKK~IYKiI~kLD-------~~vPe~Fks 151 (152)
T 1mij_A 126 TEQSWKKSIYKIISRMD-------DPVPEYFKS 151 (152)
T ss_dssp GSTTTTHHHHHHHHTCC-------CCCCGGGGC
T ss_pred CCchHHHHHHHHHHHcc-------ccchHhhcC
Confidence 455 9999999999987 458887754
No 8
>3bg1_B Nucleoporin NUP145; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Saccharomyces cerevisiae} PDB: 3bg0_B 3iko_B
Probab=30.78 E-value=1.4e+02 Score=32.56 Aligned_cols=75 Identities=20% Similarity=0.266 Sum_probs=47.0
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHhccCCccHHHHHHHHHhCCCCCCHHHHHHhhHHHHHhhhhcccCCCCccchHHHHHHH
Q 039467 210 TWQQIYFCLRTGYYDEARNVALSSRASNQFAPLLTEWINTGGMVPPEIAAAASEECDKMLRMGDRVGRAAYDKKKLLLYA 289 (687)
Q Consensus 210 vWa~IyYlLR~G~~~eA~e~~~~~~~~~~F~~~l~~y~~s~~~L~~~~~~~~~~e~~q~~r~~d~~~~~~~DPyK~AvY~ 289 (687)
....||.+|-+|++++|.+.+.+++ .....+.+.-. .++......+. .+++..-... ..-.|+.+..+|+
T Consensus 180 ~~e~i~~~L~~~~v~eA~~~Ai~~~-d~rLA~Llsq~-g~~~~~r~~la-------~~QL~~W~~~-~~~I~~~~~kiY~ 249 (442)
T 3bg1_B 180 EIEQIFLYLLLNDVVRASKLAIESK-NGHLSVLISYL-GSNDPRIRDLA-------ELQLQKWSTG-GCSIDKNISKIYK 249 (442)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTT-CHHHHHHHHHH-TSCCHHHHHHH-------HHHHHHTTSS-CCCSCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCC-CcHHHHHHHHh-cCCchHHHHHH-------HHHHHHHHHh-CccCCHHHHHHHH
Confidence 4899999999999999999999874 34455554443 22211111120 1222211111 3467899999999
Q ss_pred HHhCC
Q 039467 290 IISGS 294 (687)
Q Consensus 290 iig~c 294 (687)
+|.|.
T Consensus 250 LLAG~ 254 (442)
T 3bg1_B 250 LLSGS 254 (442)
T ss_dssp HHHSC
T ss_pred HhcCC
Confidence 99875
No 9
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=28.16 E-value=46 Score=27.61 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHhh
Q 039467 489 LLEAAGQCQEAGLYDKSIELQKRVG 513 (687)
Q Consensus 489 i~~aA~~ae~~Gr~~dAi~LY~La~ 513 (687)
++.-|.++|..|++++|+.||.-|=
T Consensus 14 lv~~Ave~D~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 14 YAILAVKADKEGKVEDAITYYKKAI 38 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4556788999999999999987543
No 10
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=27.00 E-value=50 Score=27.50 Aligned_cols=25 Identities=16% Similarity=0.084 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHhh
Q 039467 489 LLEAAGQCQEAGLYDKSIELQKRVG 513 (687)
Q Consensus 489 i~~aA~~ae~~Gr~~dAi~LY~La~ 513 (687)
++.-|.++|..|++++|+.+|.-|=
T Consensus 22 lv~~Ave~D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 22 YAINAVKADKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3556788999999999999987543
No 11
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=25.28 E-value=89 Score=33.60 Aligned_cols=45 Identities=13% Similarity=0.254 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHhhchHHHHHHHHHHHHH
Q 039467 484 ARQQFLLEAAGQCQEAGLYDKSIELQKRVGAFSMALDTINKCLSE 528 (687)
Q Consensus 484 ~~~~~i~~aA~~ae~~Gr~~dAi~LY~La~~yd~vl~lln~~Ls~ 528 (687)
+...++..-+.+.+..|+..+|...|-.||+.|+++++-.+.+-+
T Consensus 246 ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~dk~v~iW~~~~~~ 290 (399)
T 2pm7_A 246 QRNEMMIKLGDRMKENGHRQDSLTLYLAAGSLDKVASIWLSEFPD 290 (399)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhhhHHHHhhCCHHHHHHHHHHhcch
Confidence 455566778999999999999999999999999999998776553
No 12
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=25.05 E-value=56 Score=27.34 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHh
Q 039467 489 LLEAAGQCQEAGLYDKSIELQKRV 512 (687)
Q Consensus 489 i~~aA~~ae~~Gr~~dAi~LY~La 512 (687)
++.-|.+++..|++++|+.+|.-|
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~A 42 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEG 42 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567888999999999999997643
No 13
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=23.56 E-value=5.4e+02 Score=27.87 Aligned_cols=53 Identities=15% Similarity=0.083 Sum_probs=32.5
Q ss_pred HHHHHhhcHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhh---HHHHHHHHHhhh
Q 039467 371 YVLLLSIQLLPAVLYLSKESGDEGYNIDAAHISIVLADHGM---ALEYYAQAAAAV 423 (687)
Q Consensus 371 ~vLlLsgqFE~AI~~L~~~~~~~~~~vdAVH~AIaL~~~gl---a~~Y~~~~~~~~ 423 (687)
..+++|==||-|..---.+.+-+.+..-=.+.|..|++||+ |.+|...|+.++
T Consensus 331 eai~~TEiyEya~sl~~~~~~~p~l~~yKl~~A~~Lae~G~~~~A~~Ycdai~~~l 386 (441)
T 3mzk_B 331 ESILWDEIYEYIFSYDPKFKGFSSILPQKIYHASLLQEQGLNSLGTKYTDYLSSSV 386 (441)
T ss_dssp HHHHHHHHHHHHHHTSTTCCCCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCccCChhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 56777877776665321210111122335678999999996 778887666644
No 14
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=23.38 E-value=2.9e+02 Score=25.46 Aligned_cols=131 Identities=17% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHHhhcHHHHHHHHhhccCCCCCcchHHHHHHHHHHhhh-----HHHHHHHHHhhhcCCccccccccccchhHHHHHH
Q 039467 371 YVLLLSIQLLPAVLYLSKESGDEGYNIDAAHISIVLADHGM-----ALEYYAQAAAAVGGGQLSWTGRANVDQQRQKSLM 445 (687)
Q Consensus 371 ~vLlLsgqFE~AI~~L~~~~~~~~~~vdAVH~AIaL~~~gl-----a~~Y~~~~~~~~~~~~l~~~~r~~~d~~~~~~~~ 445 (687)
.+++-.|+|+.|+.++-+-..-+....+ +|+.++..+... |+.+|..+....+... -
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----------------~ 74 (217)
T 2pl2_A 13 VQLYALGRYDAALTLFERALKENPQDPE-ALYWLARTQLKLGLVNPALENGKTLVARTPRYL-----------------G 74 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSSCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----------------H
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----------------H
Q ss_pred HHHHHHHHHHhh-----------cCcceeecccCCCCCCccccccCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHh--
Q 039467 446 LKQLLTELLLRD-----------GGIYLLLGSRGAGEEGELGRYITDLKARQQFLLEAAGQCQEAGLYDKSIELQKRV-- 512 (687)
Q Consensus 446 ~~~~l~eLvlet-----------ref~~LLG~dG~r~~G~I~~~l~d~~~~~~~i~~aA~~ae~~Gr~~dAi~LY~La-- 512 (687)
.+..+..+.... +++..=+ -.+++-+.......+....-|......|++++|+..|.-|
T Consensus 75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~--------~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 146 (217)
T 2pl2_A 75 GYMVLSEAYVALYRQAEDRERGKGYLEQAL--------SVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALA 146 (217)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHH--------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCHHHHH--------HHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q ss_pred ------------------hchHHHHHHHHHHHH
Q 039467 513 ------------------GAFSMALDTINKCLS 527 (687)
Q Consensus 513 ------------------~~yd~vl~lln~~Ls 527 (687)
|+++.++..+.+.|.
T Consensus 147 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 179 (217)
T 2pl2_A 147 LEDTPEIRSALAELYLSMGRLDEALAQYAKALE 179 (217)
T ss_dssp HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 15
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=21.78 E-value=43 Score=35.11 Aligned_cols=31 Identities=6% Similarity=-0.213 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHh-CCCcccCCC
Q 039467 584 AILSVHKMARSGHYLDALREVA-KLPFLPFDP 614 (687)
Q Consensus 584 ~l~~f~~~~~~~~~~~AL~~i~-~L~ilPl~~ 614 (687)
+|-..|+++..|++++|++.+. -|..||+..
T Consensus 117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~ 148 (325)
T 3mv2_A 117 KMNEGYKNFKLNKPDIAIECFREAIYRITLLM 148 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheee
Confidence 4678899999999999999887 355666553
No 16
>3sjr_A Uncharacterized protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; 2.94A {Chromobacterium violaceum}
Probab=21.75 E-value=1.3e+02 Score=28.13 Aligned_cols=83 Identities=19% Similarity=0.281 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHHhhhc--CCCCCccccchhHHHHHHHHHHHHhcC-CCcchhhhHHHHhHHHHHHHHHHHHHH-HH
Q 039467 515 FSMALDTINKCLSEAIFAMS--RGRLDGESQTASLIHSGNEILEMEKYY-PEVSLHEREQVLEQQTVLRQLEAILSV-HK 590 (687)
Q Consensus 515 yd~vl~lln~~Ls~~ls~~~--~~~~~~~~~~~~l~~~a~~i~~~y~~~-~~~s~~~~~~~~~~~~~l~~Ll~l~~f-~~ 590 (687)
|..|++=||++|...+-... .+...+++-...|+..+..+.+.|+.+ |+.+. + . +|-+++.+ ..
T Consensus 63 fraAIe~INeaLe~~lgp~Aiq~~~~t~eaTA~RIVsfaT~FF~~yq~qhPd~~~---e------e---~L~~Fm~lIgG 130 (175)
T 3sjr_A 63 FSAAMDQISRLAELDIEPVRLPESELTGDSHSQHLLLGMEILMELYRQQHPDWTA---P------A---IRQAFAPLARA 130 (175)
T ss_dssp HHHHHHHHHHHTTCCCCCCCCTTCCCCCCHHHHHHHHHHHHHHHHHHHTCSSSCH---H------H---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCcccccCcccCcchhHHHHHHHHHHHHHHHHHhCCCCCH---H------H---HHHHHHHHHHH
Confidence 56888999999876654321 111223334568889999999999754 33222 1 1 23223332 33
Q ss_pred HHHhCCHHHHHHHHhCCCcc
Q 039467 591 MARSGHYLDALREVAKLPFL 610 (687)
Q Consensus 591 ~~~~~~~~~AL~~i~~L~il 610 (687)
-+++ =|.+|-+++..|+++
T Consensus 131 GiEq-GF~EArdIL~GL~Vl 149 (175)
T 3sjr_A 131 GLER-GYQEACQVLRQLNVY 149 (175)
T ss_dssp HHHH-HHHHHHHHHHHTTCC
T ss_pred HHHH-hHHHHHHHHhhcccc
Confidence 3444 489999999999997
No 17
>2nr5_A Hypothetical protein SO2669; PSI-2, MCSG, MAD, structural G protein structure initiative, midwest center for structural genomics; 1.90A {Shewanella oneidensis} SCOP: a.25.6.1
Probab=21.65 E-value=28 Score=26.64 Aligned_cols=9 Identities=44% Similarity=1.025 Sum_probs=7.4
Q ss_pred cchhHHHHh
Q 039467 310 STIEDFLWF 318 (687)
Q Consensus 310 ~tiEDwLWl 318 (687)
..+|||||=
T Consensus 54 keledwlwg 62 (67)
T 2nr5_A 54 KELEDWLWG 62 (67)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 578999994
No 18
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=21.38 E-value=72 Score=27.00 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=21.1
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHhhc
Q 039467 489 LLEAAGQCQEAGLYDKSIELQKRVGA 514 (687)
Q Consensus 489 i~~aA~~ae~~Gr~~dAi~LY~La~~ 514 (687)
++.-|.++|..|++++|+.+|.-|=+
T Consensus 18 lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 18 VLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45677889999999999999875543
No 19
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=20.83 E-value=32 Score=30.61 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhcC-h----hhhhcCCCCCchH--HHHHHHHHhh
Q 039467 148 HLEWGHEKYIMDTIQSH-P----AQAALGGVVGNLQ--RVRAFLRIRL 188 (687)
Q Consensus 148 yLE~qf~~~v~~~I~~~-p----~~A~lGG~P~~~~--~V~afl~v~~ 188 (687)
|||+| .|+..++++ | +-..+=++|+++| .||+||.-..
T Consensus 2 yLERq---eVk~il~s~~~~~~~rtiaL~~ipDtvndarIr~lve~~~ 46 (117)
T 2l9w_A 2 FLERN---EVKRLLASRNSKELETLICLFPLSDKVSPSLICQFLQEEI 46 (117)
T ss_dssp CCHHH---HHHHHHHCCCTTTTTSCEEEECCCTTCCHHHHHHHHHHHT
T ss_pred chhHH---HHHHHHhccCCccCCcEEEEecCCCCCCHHHHHHHHhhhh
Confidence 89998 566777765 3 3344558898876 6779988663
No 20
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=20.45 E-value=78 Score=26.05 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHhh
Q 039467 489 LLEAAGQCQEAGLYDKSIELQKRVG 513 (687)
Q Consensus 489 i~~aA~~ae~~Gr~~dAi~LY~La~ 513 (687)
++.-|.++|..|++++|+.+|.-|=
T Consensus 16 l~~~Av~~D~~g~y~eAl~~Y~~ai 40 (85)
T 2v6x_A 16 LVQKAIDLDTATQYEEAYTAYYNGL 40 (85)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556789999999999999977543
No 21
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=20.27 E-value=70 Score=28.38 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHhhch
Q 039467 489 LLEAAGQCQEAGLYDKSIELQKRVGAF 515 (687)
Q Consensus 489 i~~aA~~ae~~Gr~~dAi~LY~La~~y 515 (687)
++.-|.+++..|++++|+.||.-|-+|
T Consensus 21 lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 21 LASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 455667999999999999998765443
No 22
>2lmd_A Prospero homeobox protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transcription; NMR {Homo sapiens}
Probab=20.24 E-value=53 Score=30.63 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=19.8
Q ss_pred cch-HHHHHHHHHhCCccchhhhhcCchhhhcc
Q 039467 280 YDK-KKLLLYAIISGSRRQIDRLLRDLPTLFST 311 (687)
Q Consensus 280 ~DP-yK~AvY~iig~cd~~~~~~~~~~~~V~~t 311 (687)
.|| .|+++||||++-| ..+|+++.+
T Consensus 139 ~e~sWKK~IYKvI~kLD-------~~vPe~Fks 164 (174)
T 2lmd_A 139 VDPSWKKAIYKVICKLD-------SEVPEIFKS 164 (174)
T ss_dssp TSTHHHHHHHHHHHTTC-------SSCCCCSSC
T ss_pred CCchHHHHHHHHHHHcc-------ccchHHhcC
Confidence 355 9999999999987 457887754
Done!