Query 039467
Match_columns 687
No_of_seqs 160 out of 228
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 17:01:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039467.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039467hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wfda_ a.7.14.1 (A:) Hypothet 31.6 17 0.0012 28.9 3.6 32 489-526 18-49 (93)
2 d1mija_ a.4.1.1 (A:) Homeo-pro 30.8 33 0.0024 29.1 5.3 25 280-311 126-151 (152)
3 d1wr0a1 a.7.14.1 (A:5-81) Vacu 27.8 17 0.0013 27.7 2.9 26 489-514 14-39 (77)
4 d1b89a_ a.118.1.3 (A:) Clathri 27.4 12 0.00086 36.9 2.2 48 475-524 5-52 (336)
5 d1b89a_ a.118.1.3 (A:) Clathri 22.8 33 0.0024 33.5 4.6 36 491-526 166-201 (336)
6 d2nr5a1 a.25.6.1 (A:1-64) Hypo 22.3 12 0.0009 26.5 0.8 9 310-318 51-59 (64)
7 d1hmca_ a.26.1.2 (A:) Macropha 16.0 35 0.0026 29.1 2.5 59 593-652 69-131 (148)
8 d1fsha_ a.4.5.31 (A:) Segment 15.9 47 0.0034 26.2 3.2 32 381-412 44-75 (94)
9 d1kt1a1 a.118.8.1 (A:254-421) 14.8 1.4E+02 0.011 24.5 6.6 26 487-512 16-41 (168)
10 d1hxia_ a.118.8.1 (A:) Peroxin 14.8 2.4E+02 0.017 21.4 8.1 23 491-513 21-43 (112)
No 1
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.62 E-value=17 Score=28.92 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=25.1
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHhhchHHHHHHHHHHH
Q 039467 489 LLEAAGQCQEAGLYDKSIELQKRVGAFSMALDTINKCL 526 (687)
Q Consensus 489 i~~aA~~ae~~Gr~~dAi~LY~La~~yd~vl~lln~~L 526 (687)
++.-|.++|..|+++.|+.+|.- +++++..++
T Consensus 18 l~~~Av~~D~~g~y~eA~~~Y~~------aie~l~~~~ 49 (93)
T d1wfda_ 18 VLKRAVELDAESRYQQALVCYQE------GIDMLLQVL 49 (93)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH------HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHHh
Confidence 67889999999999999999764 455555544
No 2
>d1mija_ a.4.1.1 (A:) Homeo-prospero domain of Prospero protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=30.79 E-value=33 Score=29.13 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=19.8
Q ss_pred cch-HHHHHHHHHhCCccchhhhhcCchhhhcc
Q 039467 280 YDK-KKLLLYAIISGSRRQIDRLLRDLPTLFST 311 (687)
Q Consensus 280 ~DP-yK~AvY~iig~cd~~~~~~~~~~~~V~~t 311 (687)
.|| .|+++||||++-| ..+|+.+.+
T Consensus 126 ~e~sWKK~IYKvI~kLD-------~~vPe~Fks 151 (152)
T d1mija_ 126 TEQSWKKSIYKIISRMD-------DPVPEYFKS 151 (152)
T ss_dssp GSTTTTHHHHHHHHTCC-------CCCCGGGGC
T ss_pred CCchhhHHHHHHHHHcc-------CCchhhccC
Confidence 355 9999999999988 457887654
No 3
>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.83 E-value=17 Score=27.73 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=21.3
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHhhc
Q 039467 489 LLEAAGQCQEAGLYDKSIELQKRVGA 514 (687)
Q Consensus 489 i~~aA~~ae~~Gr~~dAi~LY~La~~ 514 (687)
++.-|.++|..|+++.|+.+|.-|=+
T Consensus 14 l~~~Av~~D~~~~y~~A~~~Y~~a~~ 39 (77)
T d1wr0a1 14 LASKAAQEDKAGNYEEALQLYQHAVQ 39 (77)
T ss_dssp HHHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46678899999999999999765433
No 4
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}
Probab=27.38 E-value=12 Score=36.92 Aligned_cols=48 Identities=19% Similarity=0.368 Sum_probs=26.6
Q ss_pred cccccCChHHHHHHHHHHHHHHHHcCChhhHHHHHHHhhchHHHHHHHHH
Q 039467 475 LGRYITDLKARQQFLLEAAGQCQEAGLYDKSIELQKRVGAFSMALDTINK 524 (687)
Q Consensus 475 I~~~l~d~~~~~~~i~~aA~~ae~~Gr~~dAi~LY~La~~yd~vl~lln~ 524 (687)
++.|+...+.- -+.++|..|++.|+++-|..+|.-.++|++++++..+
T Consensus 5 ~e~fl~~~n~~--d~~~i~~~c~~~~lye~A~~lY~~~~d~~rl~~~~v~ 52 (336)
T d1b89a_ 5 LEEFINGPNNA--HIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVH 52 (336)
T ss_dssp HTTTTTCC------------------CTTTHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcCCCcC--CHHHHHHHHHHCCCHHHHHHHHHhCCCHHHHHHHHHh
Confidence 45666544320 1455999999999999999999999999999988754
No 5
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.79 E-value=33 Score=33.47 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=31.7
Q ss_pred HHHHHHHHcCChhhHHHHHHHhhchHHHHHHHHHHH
Q 039467 491 EAAGQCQEAGLYDKSIELQKRVGAFSMALDTINKCL 526 (687)
Q Consensus 491 ~aA~~ae~~Gr~~dAi~LY~La~~yd~vl~lln~~L 526 (687)
.|.+.|++.+.+.++|-||.--|+||.|+.++=.-.
T Consensus 166 k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~ 201 (336)
T d1b89a_ 166 KVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 201 (336)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST
T ss_pred HHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcc
Confidence 378899999999999999999999999988875543
No 6
>d2nr5a1 a.25.6.1 (A:1-64) Hypothetical protein SO2669 {Shewanella oneidensis [TaxId: 70863]}
Probab=22.29 E-value=12 Score=26.53 Aligned_cols=9 Identities=44% Similarity=1.025 Sum_probs=7.4
Q ss_pred cchhHHHHh
Q 039467 310 STIEDFLWF 318 (687)
Q Consensus 310 ~tiEDwLWl 318 (687)
..+|||||=
T Consensus 51 keledwlwg 59 (64)
T d2nr5a1 51 KELEDWLWG 59 (64)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 578999994
No 7
>d1hmca_ a.26.1.2 (A:) Macrophage colony-stimulating factor (M-CSF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.00 E-value=35 Score=29.12 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=41.3
Q ss_pred HhCCHHHHHHHHhCCCcccCCCCC----hHHHHHHhccCChhHHHhhhHHHHHHHHHhHhhhcc
Q 039467 593 RSGHYLDALREVAKLPFLPFDPRV----PDAMVDVFQSLSPHVQACVPDLLRVALTCLDNVTDT 652 (687)
Q Consensus 593 ~~~~~~~AL~~i~~L~ilPl~~~~----v~~~a~~f~~l~~~V~~~iP~lLl~~m~cl~~~~~~ 652 (687)
.++++-.-|+.+ .+++.|.=+++ +.+||..|..-|-....-+-+|+-++|+-+.+-+..
T Consensus 69 ~N~~~v~~Lq~l-s~~l~~c~~~~~Ee~~~a~vrt~~~sP~~aLeKi~~V~~~~~~Ll~~~~~~ 131 (148)
T d1hmca_ 69 PNAIAIVQLQEL-SLRLKSCFTKDYEEHDKACVRTFYETPLQLLEKVKNVFNETKNLLDKDWNI 131 (148)
T ss_pred CcHHHHHHHHHH-HHHhhhccchhhhhcchHHHHHhhcCHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 334444444443 34444433333 468999999999999999999999999999876543
No 8
>d1fsha_ a.4.5.31 (A:) Segment polarity protein Dishevelled-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.94 E-value=47 Score=26.22 Aligned_cols=32 Identities=16% Similarity=0.125 Sum_probs=27.5
Q ss_pred HHHHHHhhccCCCCCcchHHHHHHHHHHhhhH
Q 039467 381 PAVLYLSKESGDEGYNIDAAHISIVLADHGMA 412 (687)
Q Consensus 381 ~AI~~L~~~~~~~~~~vdAVH~AIaL~~~gla 412 (687)
.||+||.+..+.-..+.+||+++-.|-.+|+.
T Consensus 44 e~V~WL~~~~~~~~~r~eAv~lgq~Ll~~g~i 75 (94)
T d1fsha_ 44 DVVDWLYTHVEGFKERREARKYASSMLKHGFL 75 (94)
T ss_dssp HHHHHHHHHCCCCSSHHHHHHHHHHHHHTTTE
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHCCce
Confidence 89999987545567899999999999999864
No 9
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}
Probab=14.80 E-value=1.4e+02 Score=24.51 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHh
Q 039467 487 QFLLEAAGQCQEAGLYDKSIELQKRV 512 (687)
Q Consensus 487 ~~i~~aA~~ae~~Gr~~dAi~LY~La 512 (687)
+.+.+.+-.+-..|.+.+|+..|.-|
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~a 41 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKI 41 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34567889999999999999998543
No 10
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}
Probab=14.77 E-value=2.4e+02 Score=21.36 Aligned_cols=23 Identities=9% Similarity=-0.120 Sum_probs=17.3
Q ss_pred HHHHHHHHcCChhhHHHHHHHhh
Q 039467 491 EAAGQCQEAGLYDKSIELQKRVG 513 (687)
Q Consensus 491 ~aA~~ae~~Gr~~dAi~LY~La~ 513 (687)
+.|......|++.+|+..|.-+=
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al 43 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVC 43 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc
Confidence 46777888888888888776543
Done!