BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039468
(1282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIG|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|4F4U|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F4U|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
Length = 273
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 19/108 (17%)
Query: 399 QAQEIVQLLPHPIWAEYGYPTKKGQGWVGDARTWELDVGGLSSRLYFYQDPGTHPARRIW 458
+A+ IV + + AE G PT +G G G R W+ L++ L F +P R+W
Sbjct: 20 KAKHIVIISGAGVSAESGVPTFRGAG--GYWRKWQAQ--DLATPLAFAHNPS-----RVW 70
Query: 459 TSLDTGTEIFVSKKDEVAEKENLYEVGKIAGIAICEARTSPQGQSVLI 506
E+ SK+ + IA CE R QG+ V++
Sbjct: 71 EFYHYRREVMGSKEPNAGHR----------AIAECETRLGKQGRRVVV 108
>pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
pdb|2NYR|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
Length = 271
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 19/108 (17%)
Query: 399 QAQEIVQLLPHPIWAEYGYPTKKGQGWVGDARTWELDVGGLSSRLYFYQDPGTHPARRIW 458
+A+ IV + + AE G PT +G G G R W+ L++ L F +P R+W
Sbjct: 18 KAKHIVIISGAGVSAESGVPTFRGAG--GYWRKWQAQ--DLATPLAFAHNPS-----RVW 68
Query: 459 TSLDTGTEIFVSKKDEVAEKENLYEVGKIAGIAICEARTSPQGQSVLI 506
E+ SK+ + IA CE R QG+ V++
Sbjct: 69 EFYHYRREVMGSKEPNAGHR----------AIAECETRLGKQGRRVVV 106
>pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
pdb|4G1C|B Chain B, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
Length = 267
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 19/108 (17%)
Query: 399 QAQEIVQLLPHPIWAEYGYPTKKGQGWVGDARTWELDVGGLSSRLYFYQDPGTHPARRIW 458
+A+ IV + + AE G PT +G G G R W+ L++ L F +P R+W
Sbjct: 14 KAKHIVIISGAGVSAESGVPTFRGAG--GYWRKWQAQ--DLATPLAFAHNPS-----RVW 64
Query: 459 TSLDTGTEIFVSKKDEVAEKENLYEVGKIAGIAICEARTSPQGQSVLI 506
E+ SK+ + IA CE R QG+ V++
Sbjct: 65 EFYHYRREVMGSKEPNAGHR----------AIAECETRLGKQGRRVVV 102
>pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
pdb|4HDA|B Chain B, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
Length = 275
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 19/108 (17%)
Query: 399 QAQEIVQLLPHPIWAEYGYPTKKGQGWVGDARTWELDVGGLSSRLYFYQDPGTHPARRIW 458
+A+ IV + + AE G PT +G G G R W+ L++ L F +P R+W
Sbjct: 22 KAKHIVIISGAGVSAESGVPTFRGAG--GYWRKWQAQ--DLATPLAFAHNPS-----RVW 72
Query: 459 TSLDTGTEIFVSKKDEVAEKENLYEVGKIAGIAICEARTSPQGQSVLI 506
E+ SK+ + IA CE R QG+ V++
Sbjct: 73 EFYHYRREVMGSKEPNAGHR----------AIAECETRLGKQGRRVVV 110
>pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|C Chain C, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|D Chain D, Crystal Structure Of Human Sirtuin Homolog 5
Length = 271
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 19/108 (17%)
Query: 399 QAQEIVQLLPHPIWAEYGYPTKKGQGWVGDARTWELDVGGLSSRLYFYQDPGTHPARRIW 458
+A+ IV + + AE G PT +G G G R W+ L++ L F +P R+W
Sbjct: 18 KAKHIVIISGAGVSAESGVPTFRGAG--GYWRKWQAQ--DLATPLAFAHNPS-----RVW 68
Query: 459 TSLDTGTEIFVSKKDEVAEKENLYEVGKIAGIAICEARTSPQGQSVLI 506
E+ SK+ + IA CE R QG+ V++
Sbjct: 69 EFYHYRREVXGSKEPNAGHR----------AIAECETRLGKQGRRVVV 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,035,722
Number of Sequences: 62578
Number of extensions: 1766964
Number of successful extensions: 3796
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3793
Number of HSP's gapped (non-prelim): 9
length of query: 1282
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1172
effective length of database: 8,089,757
effective search space: 9481195204
effective search space used: 9481195204
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)