Query 039468
Match_columns 1282
No_of_seqs 418 out of 1820
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 17:03:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu1_A Mitogen-activated prote 97.4 0.00097 3.3E-08 62.4 10.5 69 553-627 16-87 (103)
2 1vd2_A Protein kinase C, IOTA 96.8 0.0057 1.9E-07 57.0 9.6 69 554-624 15-86 (89)
3 1oey_A P67-PHOX, neutrophil cy 96.0 0.012 4.3E-07 54.0 7.1 73 548-625 9-81 (83)
4 2kkc_A Sequestosome-1; P62, PB 94.9 0.13 4.3E-06 49.2 10.0 72 552-626 18-101 (102)
5 1q1o_A Cell division control p 93.9 0.13 4.4E-06 48.7 7.4 59 554-614 22-85 (98)
6 1wmh_B Partitioning defective- 93.9 0.29 1E-05 45.2 9.5 72 550-625 11-84 (86)
7 2ktr_A Sequestosome-1; autopha 93.7 0.32 1.1E-05 47.5 10.0 72 552-626 33-116 (117)
8 1pqs_A Cell division control p 93.3 0.17 6E-06 45.8 7.0 57 555-613 2-63 (77)
9 2jrh_A Mitogen-activated prote 91.8 1.2 4E-05 41.0 10.2 70 553-628 12-84 (94)
10 2npt_B Mitogen-activated prote 90.1 1.1 3.9E-05 41.6 8.5 68 553-626 28-98 (100)
11 2c60_A Human mitogen-activated 89.8 1.3 4.4E-05 41.7 8.7 68 553-626 39-109 (111)
12 2bkf_A Zinc-finger protein NBR 89.4 1.7 5.9E-05 40.1 9.2 68 553-624 14-84 (87)
13 2ayd_A WRKY transcription fact 85.9 1.8 6.2E-05 39.1 7.0 46 740-785 28-74 (76)
14 3hot_A Transposable element ma 85.1 7.6 0.00026 43.7 13.8 151 801-973 75-252 (345)
15 1wj2_A Probable WRKY transcrip 85.1 2.4 8.3E-05 38.4 7.4 46 740-785 31-77 (78)
16 1wj6_A KIAA0049 protein, RSGI 84.0 2.2 7.5E-05 40.3 6.9 67 554-624 23-92 (101)
17 1nc8_A Nucleocapsid protein; H 83.6 0.48 1.6E-05 34.8 1.9 21 1260-1280 4-24 (29)
18 1ip9_A BEM1 protein; ubiquitin 80.5 4.1 0.00014 37.4 7.1 60 550-614 18-77 (85)
19 1a6b_B Momulv, zinc finger pro 79.6 0.95 3.2E-05 35.9 2.3 21 1260-1280 8-28 (40)
20 1u6p_A GAG polyprotein; MLV, A 75.9 1.5 5E-05 37.4 2.6 22 1260-1281 21-42 (56)
21 1dsq_A Nucleic acid binding pr 73.2 1.5 5.2E-05 31.3 1.7 19 1263-1281 3-21 (26)
22 2ec7_A GAG polyprotein (PR55GA 70.5 2.1 7.2E-05 35.2 2.3 19 1262-1280 27-45 (49)
23 2a51_A Nucleocapsid protein; s 61.8 3.4 0.00012 32.2 1.8 18 1263-1280 22-39 (39)
24 1oey_J P40-PHOX, neutrophil cy 59.8 25 0.00085 33.3 7.4 59 553-615 17-79 (107)
25 2bl6_A Nucleocapsid protein P1 55.1 5.1 0.00017 30.8 1.7 15 1265-1279 22-36 (37)
26 2a51_A Nucleocapsid protein; s 54.6 5.2 0.00018 31.1 1.7 18 1263-1280 1-18 (39)
27 1a1t_A Nucleocapsid protein; s 49.8 5.4 0.00019 33.3 1.2 20 1261-1280 32-51 (55)
28 2rpr_A Flywch-type zinc finger 48.7 19 0.00065 32.8 4.8 46 733-785 26-74 (87)
29 1wjn_A Tubulin-folding protein 48.3 29 0.00099 32.0 6.1 70 524-604 3-72 (97)
30 2bl6_A Nucleocapsid protein P1 46.7 6.1 0.00021 30.3 1.0 17 1264-1280 2-18 (37)
31 2ysa_A Retinoblastoma-binding 44.5 9.4 0.00032 32.3 1.8 19 1261-1279 6-24 (55)
32 2ec7_A GAG polyprotein (PR55GA 43.1 8.9 0.0003 31.4 1.5 21 1260-1280 4-24 (49)
33 1a1t_A Nucleocapsid protein; s 42.6 8.9 0.0003 32.0 1.4 21 1260-1280 10-30 (55)
34 2li8_A Protein LIN-28 homolog 42.0 15 0.00051 32.9 2.9 20 1261-1280 45-64 (74)
35 2npt_A Dual specificity mitoge 38.9 63 0.0022 30.0 6.4 75 524-615 8-84 (106)
36 3kks_A Integrase, IN; beta-str 37.6 70 0.0024 30.6 7.4 66 903-978 3-68 (152)
37 3a9j_A Ubiquitin; protein comp 37.6 39 0.0013 28.8 4.9 39 551-589 7-45 (76)
38 1cl4_A Protein (GAG polyprotei 37.6 14 0.00048 31.3 1.9 21 1261-1281 29-49 (60)
39 2ihx_A Nucleocapsid (NC) prote 37.5 11 0.00039 32.1 1.4 18 1263-1280 31-48 (61)
40 4b6w_A Tubulin-specific chaper 37.2 25 0.00085 32.1 3.7 39 553-591 13-51 (86)
41 2bwf_A Ubiquitin-like protein 37.2 47 0.0016 28.6 5.4 37 553-589 12-48 (77)
42 2cqf_A RNA-binding protein LIN 36.2 15 0.00052 31.7 1.9 18 1263-1280 30-47 (63)
43 2dzi_A Ubiquitin-like protein 35.6 61 0.0021 28.1 5.9 37 553-589 16-52 (81)
44 2ihx_A Nucleocapsid (NC) prote 35.5 13 0.00044 31.8 1.4 19 1262-1280 4-22 (61)
45 2kdi_A Ubiquitin, vacuolar pro 35.2 40 0.0014 32.2 5.0 41 549-589 14-54 (114)
46 1wh3_A 59 kDa 2'-5'-oligoadeny 34.6 66 0.0023 28.5 6.1 37 553-589 16-52 (87)
47 2lju_A Putative oxidoreductase 34.6 35 0.0012 32.7 4.3 30 710-743 60-89 (108)
48 2jya_A AGR_C_3324P, uncharacte 34.4 33 0.0011 32.9 4.1 30 711-744 53-82 (106)
49 2cqf_A RNA-binding protein LIN 33.5 17 0.00059 31.3 1.9 20 1261-1280 6-25 (63)
50 3ts2_A Protein LIN-28 homolog 33.1 18 0.0006 36.6 2.2 20 1262-1281 119-138 (148)
51 4dwf_A HLA-B-associated transc 33.1 56 0.0019 29.3 5.4 40 550-589 11-50 (90)
52 2al3_A TUG long isoform; TUG U 32.8 36 0.0012 31.7 3.9 42 549-590 14-55 (90)
53 3phx_B Ubiquitin-like protein 32.5 52 0.0018 28.7 4.9 38 552-589 12-49 (79)
54 1ndd_A NEDD8, protein (ubiquit 32.4 47 0.0016 28.3 4.6 37 553-589 9-45 (76)
55 2kd0_A LRR repeats and ubiquit 31.6 57 0.002 29.3 5.1 37 553-589 20-56 (85)
56 3mtn_B UBA80, ubcep1, ubiquiti 31.5 52 0.0018 28.8 4.8 38 552-589 11-48 (85)
57 2daj_A KIAA0977 protein, COBL- 30.6 65 0.0022 29.6 5.1 39 549-587 15-53 (91)
58 2kvr_A Ubiquitin carboxyl-term 30.2 41 0.0014 33.2 4.2 70 556-625 57-129 (130)
59 3n3k_B Ubiquitin; hydrolase, p 29.7 48 0.0016 29.1 4.3 38 552-589 11-48 (85)
60 4eew_A Large proline-rich prot 29.6 68 0.0023 28.6 5.3 39 551-589 24-62 (88)
61 2kk8_A Uncharacterized protein 29.1 71 0.0024 28.7 5.3 40 550-589 16-55 (84)
62 3ts2_A Protein LIN-28 homolog 28.5 22 0.00077 35.9 2.0 20 1261-1280 96-115 (148)
63 3k9o_B Ubiquitin, UBB+1; E2-25 28.4 64 0.0022 29.2 5.0 40 550-589 7-46 (96)
64 2li8_A Protein LIN-28 homolog 28.0 23 0.00079 31.6 1.8 20 1261-1280 23-42 (74)
65 1yx5_B Ubiquitin; proteasome, 27.6 69 0.0024 29.3 5.1 39 551-589 7-45 (98)
66 3dbh_I NEDD8; cell cycle, acti 27.4 55 0.0019 29.0 4.2 37 553-589 21-57 (88)
67 3v6c_B Ubiquitin; structural g 26.6 69 0.0024 28.9 4.8 37 553-589 26-62 (91)
68 2uyz_B Small ubiquitin-related 26.0 81 0.0028 27.4 5.0 37 553-589 12-48 (79)
69 4hcn_B Polyubiquitin, ubiquiti 26.0 70 0.0024 29.4 4.8 37 553-589 31-67 (98)
70 1sif_A Ubiquitin; hydrophobic 25.3 73 0.0025 28.7 4.7 39 551-589 16-54 (88)
71 3l3u_A POL polyprotein; DNA in 25.2 1.2E+02 0.0042 29.5 6.9 65 903-977 10-74 (163)
72 2ylm_A Ubiquitin carboxyl-term 24.9 1.4E+02 0.0048 36.2 8.4 72 556-627 37-111 (530)
73 2hj8_A Interferon-induced 17 k 24.6 96 0.0033 27.8 5.3 37 553-589 13-49 (88)
74 4fbj_B NEDD8; effector-HOST ta 24.3 81 0.0028 28.3 4.8 38 552-589 8-45 (88)
75 1wxv_A BAG-family molecular ch 24.0 1.1E+02 0.0039 27.4 5.8 35 555-589 17-56 (92)
76 2l7r_A Ubiquitin-like protein 23.9 91 0.0031 28.4 5.1 36 554-589 27-62 (93)
77 3b08_A Polyubiquitin-C, ubiqui 23.8 1.7E+02 0.0059 28.3 7.6 59 527-589 63-121 (152)
78 2ojr_A Ubiquitin; lanthide-bin 22.5 1.2E+02 0.004 28.6 5.8 36 554-589 45-80 (111)
79 1ttn_A DC-UBP, dendritic cell- 22.4 1E+02 0.0035 28.8 5.2 37 553-589 32-68 (106)
80 1wyw_B Ubiquitin-like protein 22.4 1E+02 0.0034 28.4 5.1 37 553-589 30-66 (97)
81 2kan_A Uncharacterized protein 21.9 1.4E+02 0.0048 27.3 6.0 34 556-589 26-59 (94)
82 3njn_A Peptidase; structural g 21.8 45 0.0015 32.3 2.5 76 279-369 11-97 (119)
83 1wm3_A Ubiquitin-like protein 21.4 1.3E+02 0.0046 26.0 5.4 37 553-589 10-46 (72)
84 1wy8_A NP95-like ring finger p 21.3 1.7E+02 0.0057 25.9 6.3 35 555-589 19-54 (89)
85 3hph_A Integrase, IN; protein- 20.5 1.8E+02 0.0061 30.1 7.2 66 903-978 61-126 (219)
86 2kj6_A Tubulin folding cofacto 20.3 1.4E+02 0.0049 27.7 5.7 37 556-592 28-64 (97)
87 3a4r_A Nfatc2-interacting prot 20.2 1.6E+02 0.0054 26.1 5.8 37 553-589 16-53 (79)
88 1cl4_A Protein (GAG polyprotei 20.1 22 0.00075 30.1 0.0 18 1263-1280 2-19 (60)
No 1
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=97.37 E-value=0.00097 Score=62.40 Aligned_cols=69 Identities=16% Similarity=0.400 Sum_probs=61.0
Q ss_pred CCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEEEecCCCCceEEeechHHHHHHHHhhcCc---CeEEEEEeec
Q 039468 553 GGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKYFLPNNNKTLITISGDKDIRRLIDFHEDS---GTVDVYVMVG 627 (1282)
Q Consensus 553 GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky~LP~~~~~Li~v~dD~Dl~~M~e~~~~~---~~v~IYve~~ 627 (1282)
+|+++++.++|-++|+||..|+.+.||. ++-|+|+ |+..+|+|.+++||++.++..+.. ..+.|++...
T Consensus 16 ~GEkRIi~f~RPv~f~eL~~Kv~~~fGq---~ldL~y~---n~EllIpl~sQeDLDkaIellDrss~~kSLrIlL~~~ 87 (103)
T 2cu1_A 16 RGEKRILQFPRPVKLEDLRSKAKIAFGQ---SMDLHYT---NNELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVIN 87 (103)
T ss_dssp TTEEEEEEEESSCCHHHHHHHHHHHHSS---CEEEEEC---SSSSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEEC
T ss_pred cCeEEEEeccCCccHHHHHHHHHHHhCC---eeeEEEe---cceEEEeccCHHHHHHHHHHHccCCcccceEEEEecC
Confidence 8999999999999999999999999986 4889999 777899999999999999886654 5688888774
No 2
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=96.77 E-value=0.0057 Score=57.02 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=55.4
Q ss_pred CceeEEEEcCCCChHHHHHHHHHhcCCCC-CceEEEEEecCCCCceEEeechHHHHHHHHhhcCcCe--EEEEE
Q 039468 554 GDAHALSVNKESSFDELKLEMAEMWKYDP-NSMIVKYFLPNNNKTLITISGDKDIRRLIDFHEDSGT--VDVYV 624 (1282)
Q Consensus 554 G~t~~i~Vdr~iSf~ef~~kL~e~~~~~~-~~~~lky~LP~~~~~Li~v~dD~Dl~~M~e~~~~~~~--v~IYv 624 (1282)
|+.+.+.|+.+++|.+|.++|.+.|++.. +.+.++|.=. ...+++|++|.||...+..+...+. +-|+|
T Consensus 15 gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE--eGD~itisSd~EL~eAl~l~~~n~~~~l~ihv 86 (89)
T 1vd2_A 15 GDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE--EGDPCTVSSQLELEEAFRLYELNKDSELLIHV 86 (89)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS--SSCCEECCSHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC--CCCcccccCHHHHHHHHHHHHccCCCCEEEEE
Confidence 56888999999999999999999999864 4588998733 4679999999999999997554433 44444
No 3
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=96.03 E-value=0.012 Score=53.99 Aligned_cols=73 Identities=4% Similarity=0.121 Sum_probs=61.5
Q ss_pred cEEEeCCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEEEecCCCCceEEeechHHHHHHHHhhcCcCeEEEEEe
Q 039468 548 SLVYSGGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKYFLPNNNKTLITISGDKDIRRLIDFHEDSGTVDVYVM 625 (1282)
Q Consensus 548 ~~~Y~GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky~LP~~~~~Li~v~dD~Dl~~M~e~~~~~~~v~IYve 625 (1282)
+++|. .+..|.|.++++|.+|.++|++++.+..+.+.+.|.-+ +...++ +.+|+||+.+......+ .+-+|+.
T Consensus 9 KV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~-~s~~~v-i~~d~dl~~aw~~~~n~-~LtL~C~ 81 (83)
T 1oey_A 9 KVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR-DSNELV-PLSEDSMKDAWGQVKNY-CLTLWCE 81 (83)
T ss_dssp EEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT-TCSSCE-ECCTTTHHHHHTTCBTT-EEEEEEC
T ss_pred EEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC-CCCCee-ccChHHHHHHHHhccCC-cEEEEEe
Confidence 46677 78899999999999999999999999778889999877 555667 99999999999986665 4777764
No 4
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=94.94 E-value=0.13 Score=49.22 Aligned_cols=72 Identities=13% Similarity=0.296 Sum_probs=58.9
Q ss_pred eCCceeEEEEcCC-----------CChHHHHHHHHHhc-CCCCCceEEEEEecCCCCceEEeechHHHHHHHHhhcCcCe
Q 039468 552 SGGDAHALSVNKE-----------SSFDELKLEMAEMW-KYDPNSMIVKYFLPNNNKTLITISGDKDIRRLIDFHEDSGT 619 (1282)
Q Consensus 552 ~GG~t~~i~Vdr~-----------iSf~ef~~kL~e~~-~~~~~~~~lky~LP~~~~~Li~v~dD~Dl~~M~e~~~~~~~ 619 (1282)
.|++.|-+.++++ .||.+|..++.+.| ++....+.++|. .+...||+|++|++|...+.... -+.
T Consensus 18 ~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~--DedGDlItiSsDeEL~~Al~~~~-~~~ 94 (102)
T 2kkc_A 18 AAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYR--AERGDLVAFSSDEELTMAMSYVK-DDI 94 (102)
T ss_dssp CEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEE--CTTCCEEEECSHHHHHHHHHHCC-SSE
T ss_pred CCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCCcEEEEEE--CCCCCEEEecCHHHHHHHHHhcC-CCe
Confidence 3678888999863 48999999999998 556667999998 34567999999999999999765 568
Q ss_pred EEEEEee
Q 039468 620 VDVYVMV 626 (1282)
Q Consensus 620 v~IYve~ 626 (1282)
+.|||..
T Consensus 95 lRlyVke 101 (102)
T 2kkc_A 95 FRIYIKE 101 (102)
T ss_dssp EEEEEEE
T ss_pred EEEEEEc
Confidence 9999863
No 5
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=93.90 E-value=0.13 Score=48.65 Aligned_cols=59 Identities=17% Similarity=0.237 Sum_probs=48.8
Q ss_pred CceeEEEEcCCCChHHHHHHHHHhcCCC-C----CceEEEEEecCCCCceEEeechHHHHHHHHhh
Q 039468 554 GDAHALSVNKESSFDELKLEMAEMWKYD-P----NSMIVKYFLPNNNKTLITISGDKDIRRLIDFH 614 (1282)
Q Consensus 554 G~t~~i~Vdr~iSf~ef~~kL~e~~~~~-~----~~~~lky~LP~~~~~Li~v~dD~Dl~~M~e~~ 614 (1282)
+++..+.|..+|+|.+|.++|.+++++. . ..++++|+=. .-..+.+.+|+|++..++..
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDE--dGD~Vtl~sddDl~~A~e~~ 85 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDE--DGDFVVLGSDEDWNVAKEML 85 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECS--SSCEEEECSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcC--CCCEEEEcCHHHHHHHHHHH
Confidence 5688899999999999999999999863 2 3368888853 44799999999999988854
No 6
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=93.85 E-value=0.29 Score=45.18 Aligned_cols=72 Identities=11% Similarity=0.213 Sum_probs=60.5
Q ss_pred EEeCCceeEEEEcCC--CChHHHHHHHHHhcCCCCCceEEEEEecCCCCceEEeechHHHHHHHHhhcCcCeEEEEEe
Q 039468 550 VYSGGDAHALSVNKE--SSFDELKLEMAEMWKYDPNSMIVKYFLPNNNKTLITISGDKDIRRLIDFHEDSGTVDVYVM 625 (1282)
Q Consensus 550 ~Y~GG~t~~i~Vdr~--iSf~ef~~kL~e~~~~~~~~~~lky~LP~~~~~Li~v~dD~Dl~~M~e~~~~~~~v~IYve 625 (1282)
+.-|++.|-+.++++ .+|++|..+|...+++....+.+.|.= ..-.|++|+||+++.+-+..... .+.|||.
T Consensus 11 skf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D--~dGDLlpInnDdnl~~Al~~a~p--lLRl~Iq 84 (86)
T 1wmh_B 11 SKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTD--AHGDLLPLTNDDSLHRALASGPP--PLRLLVQ 84 (86)
T ss_dssp EEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEEC--TTSCEEECCSHHHHHHHTTSSSS--CEEEEEE
T ss_pred eecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEEC--CCCCEeeecCHHHHHHHHHhCCC--cEEEEEE
Confidence 455889999999976 899999999999999877789999994 35679999999999998886533 7888875
No 7
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=93.68 E-value=0.32 Score=47.46 Aligned_cols=72 Identities=13% Similarity=0.287 Sum_probs=59.2
Q ss_pred eCCceeEEEEcCC-----------CChHHHHHHHHHhc-CCCCCceEEEEEecCCCCceEEeechHHHHHHHHhhcCcCe
Q 039468 552 SGGDAHALSVNKE-----------SSFDELKLEMAEMW-KYDPNSMIVKYFLPNNNKTLITISGDKDIRRLIDFHEDSGT 619 (1282)
Q Consensus 552 ~GG~t~~i~Vdr~-----------iSf~ef~~kL~e~~-~~~~~~~~lky~LP~~~~~Li~v~dD~Dl~~M~e~~~~~~~ 619 (1282)
.+++.|-+.++.+ .||.+|.+++.+.| ++...++.++|. .+...||+|++|++|..-+.... -+.
T Consensus 33 ~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~~f~l~Yk--DEdGDlItISsDeEL~~Al~~~~-~~~ 109 (117)
T 2ktr_A 33 AAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYR--AERGDLVAFSSDEELTMAMSYVK-DDI 109 (117)
T ss_dssp CEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEE--CTTCCEEEECSHHHHHHHHHHCC-SSE
T ss_pred CCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCCcEEEEEE--CCCCCEEEecCHHHHHHHHHhcC-CCe
Confidence 4678899999854 49999999999999 667677999998 33567999999999999888765 468
Q ss_pred EEEEEee
Q 039468 620 VDVYVMV 626 (1282)
Q Consensus 620 v~IYve~ 626 (1282)
+.|||..
T Consensus 110 lRlyVke 116 (117)
T 2ktr_A 110 FRIYIKE 116 (117)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999863
No 8
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=93.32 E-value=0.17 Score=45.83 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=48.4
Q ss_pred ceeEEEEcCCCChHHHHHHHHHhcCCC-----CCceEEEEEecCCCCceEEeechHHHHHHHHh
Q 039468 555 DAHALSVNKESSFDELKLEMAEMWKYD-----PNSMIVKYFLPNNNKTLITISGDKDIRRLIDF 613 (1282)
Q Consensus 555 ~t~~i~Vdr~iSf~ef~~kL~e~~~~~-----~~~~~lky~LP~~~~~Li~v~dD~Dl~~M~e~ 613 (1282)
+...+.|..+|+|.+|.++|.++++.. ...++++|+=- ....+++.+|+|++.-++.
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDE--dGD~Vti~sddDl~~A~~~ 63 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDE--DGDFVVLGSDEDWNVAKEM 63 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEET--TTEEEECCSTTHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcC--CCCEEEEcCHHHHHHHHHH
Confidence 467899999999999999999999865 46688999854 4479999999999987774
No 9
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=91.84 E-value=1.2 Score=41.04 Aligned_cols=70 Identities=11% Similarity=0.406 Sum_probs=59.3
Q ss_pred CCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEEEecCCCCceEEeechHHHHHHHHhhc---CcCeEEEEEeecC
Q 039468 553 GGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKYFLPNNNKTLITISGDKDIRRLIDFHE---DSGTVDVYVMVGE 628 (1282)
Q Consensus 553 GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky~LP~~~~~Li~v~dD~Dl~~M~e~~~---~~~~v~IYve~~~ 628 (1282)
-|+.++|...|-+.|.|+..|+.+.||- ++-++|. |+--+++|.+.+||++-++..+ ...++.|.+....
T Consensus 12 ~gEKRIi~f~RPvkf~dl~qkv~~afGq---~ldl~y~---nnEL~iPL~~Q~DLDkAvelLDrs~~mkSLRIlL~~~~ 84 (94)
T 2jrh_A 12 NGERRIIAFSRPVKYEDVEHKVTTVFGQ---PLDLHYM---NNELSILLKNQDDLDKAIDILDRSSSMKSLRILLLSQD 84 (94)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHHHHCS---SEEEEEE---CSSCEEECCSHHHHHHHHHHHHHSTTTTEEEEEEEECS
T ss_pred cCceEEEecCCCccHHHHHHHHHHHhCC---eeeeEEe---cceeEEeccCHHHHHHHHHHhccCccccceEEEEEcCC
Confidence 4789999999999999999999999985 4889998 6566899999999999888644 4467889888743
No 10
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=90.12 E-value=1.1 Score=41.62 Aligned_cols=68 Identities=13% Similarity=0.378 Sum_probs=56.6
Q ss_pred CCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEEEecCCCCceEEeechHHHHHHHHhhcC---cCeEEEEEee
Q 039468 553 GGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKYFLPNNNKTLITISGDKDIRRLIDFHED---SGTVDVYVMV 626 (1282)
Q Consensus 553 GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky~LP~~~~~Li~v~dD~Dl~~M~e~~~~---~~~v~IYve~ 626 (1282)
-|+.++|...|-+.|.|+..|+.+.||-. +-|+|. |+--+++|.+.+||++-++..+. ..++.|.+..
T Consensus 28 ~gEkRIi~f~RPv~f~el~~kv~~afGq~---ldl~y~---nnEL~iPL~~Q~DLDkAvelLDrs~~~kSLrIlL~~ 98 (100)
T 2npt_B 28 RGEKRILQFPRPVKLEDLRSKAKIAFGQS---MDLHYT---NNELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVI 98 (100)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHHHHTSC---EEEEEE---ETTEEEECCCHHHHHHHHHHHHHCSSCCSEEEEEEE
T ss_pred cCceEEEecCCCccHHHHHHHHHHHhCCe---eeeEEe---cceeEEecccHHHHHHHHHHhccCccccceEEEEec
Confidence 47899999999999999999999999854 889998 55668999999999998887443 3557777654
No 11
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=89.83 E-value=1.3 Score=41.71 Aligned_cols=68 Identities=12% Similarity=0.406 Sum_probs=56.6
Q ss_pred CCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEEEecCCCCceEEeechHHHHHHHHhhcC---cCeEEEEEee
Q 039468 553 GGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKYFLPNNNKTLITISGDKDIRRLIDFHED---SGTVDVYVMV 626 (1282)
Q Consensus 553 GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky~LP~~~~~Li~v~dD~Dl~~M~e~~~~---~~~v~IYve~ 626 (1282)
-|+.++|...|-+.|.|+..|+.+.||- ++-|+|. |+--+|+|.+.+||++-++..+. ..++.|.+..
T Consensus 39 ~gEKRIiqf~RPvkf~dl~qkv~~afGq---~ldl~y~---nnEL~IPL~~Q~DLDkAvelLDrs~~mkSLRIlL~~ 109 (111)
T 2c60_A 39 NGERRIIAFSRPVKYEDVEHKVTTVFGQ---PLDLHYM---NNELSILLKNQDDLDKAIDILDRSSSMKSLRILLLS 109 (111)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHHHHSS---CCEEEEE---CSSCEEECCSHHHHHHHHHHHHHCSSCCSEEEEEEC
T ss_pred cCceEEEecCCCccHHHHHHHHHHHhCC---eeeeEEe---cceEEEecccHHHHHHHHHHhccCccccceEEEEec
Confidence 5899999999999999999999999985 4789998 66678999999999998887443 3557777654
No 12
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=89.44 E-value=1.7 Score=40.07 Aligned_cols=68 Identities=7% Similarity=0.315 Sum_probs=54.7
Q ss_pred CCceeEEEEcC--CCChHHHHHHHHHhcCCCCCceEEEEEecCCCCceEEeechHHHHHHHHhhcC-cCeEEEEE
Q 039468 553 GGDAHALSVNK--ESSFDELKLEMAEMWKYDPNSMIVKYFLPNNNKTLITISGDKDIRRLIDFHED-SGTVDVYV 624 (1282)
Q Consensus 553 GG~t~~i~Vdr--~iSf~ef~~kL~e~~~~~~~~~~lky~LP~~~~~Li~v~dD~Dl~~M~e~~~~-~~~v~IYv 624 (1282)
.|+++.+.|+- +++|.|+...+...|+++ .+.++|. .+....+.|++|.++..++..+.. ...+++-|
T Consensus 14 ~ge~~rf~vs~~~~~tweel~~mvk~~f~L~--~~~ikY~--DEenD~v~i~Sq~E~eEAlkva~k~~n~L~m~v 84 (87)
T 2bkf_A 14 KNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYL--DEENEEVSINSQGEYEEALKMAVKQGNQLQMQV 84 (87)
T ss_dssp TTEEEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEEE--CTTSCEEEECSHHHHHHHHHHHHHTTTEEEEEE
T ss_pred cCCeeEEEeccCCCCCHHHHHHHHHHHcCCC--ceEEEEE--cCCCCEEEEecHHHHHHHHHHhccCCCEEEEEE
Confidence 47888888855 699999999999999985 5788887 345679999999999999997665 44455554
No 13
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=85.93 E-value=1.8 Score=39.06 Aligned_cols=46 Identities=26% Similarity=0.437 Sum_probs=37.9
Q ss_pred eecCC-eEEEEeeecCCCceEEEEEEeCCCCeEEEEeecCCCcCCCC
Q 039468 740 KKNEG-LRVTAKCKAEGCPWRIHASRVPTTQLFQIKTMNGMHTCKAG 785 (1282)
Q Consensus 740 kKSdk-~Rv~~~C~~~GCpWrI~As~~~~s~~w~Ik~~~~eHnC~~~ 785 (1282)
+++++ -|-.++|+..||+.+=...+..++....++++..+|||...
T Consensus 28 ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 74 (76)
T 2ayd_A 28 VKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74 (76)
T ss_dssp CTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred cCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence 34443 46679999999999999988877778889999999999864
No 14
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=85.10 E-value=7.6 Score=43.71 Aligned_cols=151 Identities=12% Similarity=0.105 Sum_probs=78.4
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHhcCcccChHhHHHhhHhh-hccCC------CChhhhhhcHHHHHHHHHhh---CCC
Q 039468 801 SIVKEKLLEAPKCKPKEIAEEIRRDFGIELGYVKAWRALENA-RGESQ------VSYKDSYNQLPWLVDKILET---NPG 870 (1282)
Q Consensus 801 ~~ik~~ir~~p~~~p~~I~~~l~~~~G~~iSy~q~~Rak~ka-~e~i~------G~~~esy~~L~~yl~~l~e~---NPG 870 (1282)
+.+.+.+..+|.++.++|.+.+ .+|.+.++|.-.+. +.... .-.++....-..++..+... ++.
T Consensus 75 ~~i~~~v~~~~~~t~~~ia~~l------~vs~~tV~r~L~~~g~~~k~~~~~~~~l~~~~~~~r~~~~~~~l~~~~~~~~ 148 (345)
T 3hot_A 75 AELQALLDEDDAQTQKQLAEQL------EVSQQAVSNRLREMGKIQKVGRWVPHELNERQMERRKNTCEILLSRYKRKSF 148 (345)
T ss_dssp HHHHHHHHHCSCCCHHHHHHHT------TSCHHHHHHHHHHTTCEEEECCEESSCCCHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhCccchHHHHHHHH------CCCHHHHHHHHHHhCCeeeccccccccCChhhhhhhHHHHHHHHHhhCCcch
Confidence 4556667789999999998766 57888888864432 11100 11122222223444444432 111
Q ss_pred cEEEEccccCccce------eeeecchhhHHHHHhcCCCeeeecccccccccCcceeeeeeecCCCCeEEEEEEEec---
Q 039468 871 SVVTLSTREDLSFH------HLFVALHASLYGFQNGCRPLIFLDSFPIKSKYQSSLLTATALDGNDEIFPVAFGVVD--- 941 (1282)
Q Consensus 871 s~~~v~~ded~~F~------rlF~a~~~si~gf~~gcrpVI~iD~TyltnkY~g~Ll~avGvD~n~~~~pvAfAvV~--- 941 (1282)
..-.+-.||. .|. .-.|+.. |-++.. +......++.+++..+.+.+| .+++.+++
T Consensus 149 ~~~Iv~~DE~-~~~~~~~~~~~~w~~~--------g~~~~~----~~~~~~~~~~~~v~~~~~~~g---~~~~~~~~~~~ 212 (345)
T 3hot_A 149 LHRIVTGDEK-WIFFVNPKRKKSYVDP--------GQPATS----TARPNRFGKKTMLCVWWDQSG---VIYYELLKPGE 212 (345)
T ss_dssp GGGEEEEEEE-EEESCCCCCCEEEECS--------SSCCCC----EECCCTTCCEEEEEEEEESSS---EEEEEEECSSC
T ss_pred HHhhhcccce-eEEecCccceeeeccC--------CCCCCC----CcCccCcCCcEEEEEEEcccC---ceeeEecCCCC
Confidence 1111222332 121 1112111 111111 122234556677777777766 56777776
Q ss_pred cCCchhHHHHHHHHHHhh----cC----CceEEEEecCcc
Q 039468 942 AVSDDNWHWFLLQLKSAL----ST----CQSITFVTDRLG 973 (1282)
Q Consensus 942 ~Et~esw~WfLe~Lk~~m----~~----~~p~vIISD~~~ 973 (1282)
.-+.+.|.-+|+.+...+ +. ..+++|+.|...
T Consensus 213 ~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~ 252 (345)
T 3hot_A 213 TVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAP 252 (345)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCT
T ss_pred cccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCC
Confidence 557788888888776554 21 346789999976
No 15
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=85.08 E-value=2.4 Score=38.41 Aligned_cols=46 Identities=28% Similarity=0.380 Sum_probs=37.4
Q ss_pred eecCC-eEEEEeeecCCCceEEEEEEeCCCCeEEEEeecCCCcCCCC
Q 039468 740 KKNEG-LRVTAKCKAEGCPWRIHASRVPTTQLFQIKTMNGMHTCKAG 785 (1282)
Q Consensus 740 kKSdk-~Rv~~~C~~~GCpWrI~As~~~~s~~w~Ik~~~~eHnC~~~ 785 (1282)
.++++ -|-.++|+..||+.+=...+...+....++++..+|||...
T Consensus 31 ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 31 VKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp CTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred cCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 34443 46678999999999999988777777888999999999864
No 16
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=83.95 E-value=2.2 Score=40.33 Aligned_cols=67 Identities=7% Similarity=0.325 Sum_probs=53.3
Q ss_pred CceeEEEEcC--CCChHHHHHHHHHhcCCCCCceEEEEEecCCCCceEEeechHHHHHHHHhhcC-cCeEEEEE
Q 039468 554 GDAHALSVNK--ESSFDELKLEMAEMWKYDPNSMIVKYFLPNNNKTLITISGDKDIRRLIDFHED-SGTVDVYV 624 (1282)
Q Consensus 554 G~t~~i~Vdr--~iSf~ef~~kL~e~~~~~~~~~~lky~LP~~~~~Li~v~dD~Dl~~M~e~~~~-~~~v~IYv 624 (1282)
|+++.+.|+- +++|.|+...+...|+++ .+.++|. .+....+.|.+|.++..++..+.. ...+++.|
T Consensus 23 ge~~rF~Vs~~~~~tweel~~mvk~~f~L~--~~~IkY~--DEenD~V~i~Sq~E~eEAlkva~k~~n~L~m~V 92 (101)
T 1wj6_A 23 NEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYL--DEENEEVSINSQGEYEEALKMAVKQGNQLQMQV 92 (101)
T ss_dssp TEEEEEEESCTTTSCHHHHHHHHHHHHCCS--SBCCEEE--CTTSCEECCCSHHHHHHHHHHHHHHTSEEEEEC
T ss_pred CCeeEEEecCCCCCCHHHHHHHHHHHcCCC--ceEEEEe--cCCCCEEEEecHHHHHHHHHHhccCCCEEEEEE
Confidence 5667777744 699999999999999985 5778887 345679999999999999998766 44566655
No 17
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=83.63 E-value=0.48 Score=34.77 Aligned_cols=21 Identities=24% Similarity=0.841 Sum_probs=18.3
Q ss_pred CceeeccccCcCCCCcCCCCC
Q 039468 1260 KRELHCSKCKGAGHNRKTCHV 1280 (1282)
Q Consensus 1260 Kr~~~CSrCk~~GHNkrTCp~ 1280 (1282)
++.+.|-+|++.||-.+.|+.
T Consensus 4 r~~~~C~nCgk~GH~ar~C~~ 24 (29)
T 1nc8_A 4 RKVIRCWNCGKEGHSARQCRA 24 (29)
T ss_dssp CCCCBCTTTSCBSSCGGGCCS
T ss_pred CCCCEEEECCccccCHhHCcc
Confidence 455789999999999999975
No 18
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=80.55 E-value=4.1 Score=37.42 Aligned_cols=60 Identities=20% Similarity=0.324 Sum_probs=44.5
Q ss_pred EEeCCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEEEecCCCCceEEeechHHHHHHHHhh
Q 039468 550 VYSGGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKYFLPNNNKTLITISGDKDIRRLIDFH 614 (1282)
Q Consensus 550 ~Y~GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky~LP~~~~~Li~v~dD~Dl~~M~e~~ 614 (1282)
+|. ++--+|.|+.+|+|.+|.+||++.+.++ +..+.+.. .++.+- .|.+|+||..-++-.
T Consensus 18 yy~-DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~~yk-de~~g~-~i~sD~dl~~aiqrn 77 (85)
T 1ip9_A 18 YYK-DDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTKL-FDGSGE-EIKTDSQVSNIIQAK 77 (85)
T ss_dssp CBT-TCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEECC-SSSCCS-CCCSHHHHHHHHHTT
T ss_pred Eec-CcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEEEec-CCCCCC-cccCHHHHHHHHHhc
Confidence 444 4677899999999999999999998873 34443333 443333 899999999988743
No 19
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=79.57 E-value=0.95 Score=35.92 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=18.6
Q ss_pred CceeeccccCcCCCCcCCCCC
Q 039468 1260 KRELHCSKCKGAGHNRKTCHV 1280 (1282)
Q Consensus 1260 Kr~~~CSrCk~~GHNkrTCp~ 1280 (1282)
+...+|-+|++.||-.+.||.
T Consensus 8 ~~~~~C~~Cgk~GH~ardCP~ 28 (40)
T 1a6b_B 8 LDRDQCAYCKEKGHWAKDCPK 28 (40)
T ss_dssp CCSSSCSSSCCTTCCTTSCSS
T ss_pred CCCCeeeECCCCCcchhhCcC
Confidence 345799999999999999996
No 20
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=75.94 E-value=1.5 Score=37.40 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.1
Q ss_pred CceeeccccCcCCCCcCCCCCC
Q 039468 1260 KRELHCSKCKGAGHNRKTCHVY 1281 (1282)
Q Consensus 1260 Kr~~~CSrCk~~GHNkrTCp~~ 1281 (1282)
+...+|-+|++.||-.+.||..
T Consensus 21 ~~~~~C~~Cge~GH~ardCp~~ 42 (56)
T 1u6p_A 21 LDRDQCAYCKEKGHWAKDCPKK 42 (56)
T ss_dssp CCTTBCSSSCCBSSCGGGCTTC
T ss_pred CCCCcceeCCCCCcccccCcCC
Confidence 4457999999999999999964
No 21
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=73.19 E-value=1.5 Score=31.29 Aligned_cols=19 Identities=26% Similarity=0.651 Sum_probs=17.1
Q ss_pred eeccccCcCCCCcCCCCCC
Q 039468 1263 LHCSKCKGAGHNRKTCHVY 1281 (1282)
Q Consensus 1263 ~~CSrCk~~GHNkrTCp~~ 1281 (1282)
.+|-+|++.||..+.||.-
T Consensus 3 ~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC
T ss_pred CeeEeCCCCCcccccCCCc
Confidence 5799999999999999863
No 22
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=70.46 E-value=2.1 Score=35.17 Aligned_cols=19 Identities=32% Similarity=0.625 Sum_probs=14.7
Q ss_pred eeeccccCcCCCCcCCCCC
Q 039468 1262 ELHCSKCKGAGHNRKTCHV 1280 (1282)
Q Consensus 1262 ~~~CSrCk~~GHNkrTCp~ 1280 (1282)
...|-+|++.||-.+.||.
T Consensus 27 ~~~C~~Cg~~GH~~~~C~~ 45 (49)
T 2ec7_A 27 RQGCWKCGKTGHVMAKCPE 45 (49)
T ss_dssp CCSCSSSCCSSCCGGGCCS
T ss_pred CCeeCcCCCcCCccCCCcC
Confidence 4578888888888888875
No 23
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=61.76 E-value=3.4 Score=32.19 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=16.6
Q ss_pred eeccccCcCCCCcCCCCC
Q 039468 1263 LHCSKCKGAGHNRKTCHV 1280 (1282)
Q Consensus 1263 ~~CSrCk~~GHNkrTCp~ 1280 (1282)
..|-+|++.||-.+.||+
T Consensus 22 ~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 22 EGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp SSCTTTCCSSSCTTTSCC
T ss_pred CccccCCCCCCccCcCcC
Confidence 589999999999999985
No 24
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=59.79 E-value=25 Score=33.31 Aligned_cols=59 Identities=10% Similarity=0.217 Sum_probs=47.6
Q ss_pred CCceeEEEEcCC----CChHHHHHHHHHhcCCCCCceEEEEEecCCCCceEEeechHHHHHHHHhhc
Q 039468 553 GGDAHALSVNKE----SSFDELKLEMAEMWKYDPNSMIVKYFLPNNNKTLITISGDKDIRRLIDFHE 615 (1282)
Q Consensus 553 GG~t~~i~Vdr~----iSf~ef~~kL~e~~~~~~~~~~lky~LP~~~~~Li~v~dD~Dl~~M~e~~~ 615 (1282)
|-.++-|.|..+ =+|.||+..+...|. .+.+.+.|.=+.. .||.|-||+|+.-|++...
T Consensus 17 ~~~irdI~veedl~~~P~ykdLl~lmr~~F~--~~DIaLNYrD~eG--DLIrilddeDv~lmi~~sr 79 (107)
T 1oey_J 17 ISTIKDIAVEEDLSSTPLLKDLLELTRREFQ--REDIALNYRDAEG--DLVRLLSDEDVALMVRQAR 79 (107)
T ss_dssp EEEEEEEEECSCTTCCCCHHHHHHHHHHHHC--CSSEEEEEECTTS--CEEECCSHHHHHHHHHHCC
T ss_pred CceeeeEEEccccccCCCHHHHHHHHHHHhc--ccceeeeeecCCC--CEEEEcchHHHHHHHHHhh
Confidence 445677788776 389999999999987 4579999985433 5999999999999999763
No 25
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=55.11 E-value=5.1 Score=30.79 Aligned_cols=15 Identities=53% Similarity=1.121 Sum_probs=7.9
Q ss_pred ccccCcCCCCcCCCC
Q 039468 1265 CSKCKGAGHNRKTCH 1279 (1282)
Q Consensus 1265 CSrCk~~GHNkrTCp 1279 (1282)
|-+|++.||-.+.||
T Consensus 22 C~~Cg~~GH~a~~C~ 36 (37)
T 2bl6_A 22 CFKCKQPGHFSKQCR 36 (37)
T ss_dssp CSSCCCTTGGGGTTC
T ss_pred EccCCCcCCccCcCc
Confidence 445555555555554
No 26
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=54.64 E-value=5.2 Score=31.12 Aligned_cols=18 Identities=33% Similarity=0.888 Sum_probs=16.3
Q ss_pred eeccccCcCCCCcCCCCC
Q 039468 1263 LHCSKCKGAGHNRKTCHV 1280 (1282)
Q Consensus 1263 ~~CSrCk~~GHNkrTCp~ 1280 (1282)
++|-+|++.||-.+.||.
T Consensus 1 i~C~~Cg~~GH~a~~C~~ 18 (39)
T 2a51_A 1 LTCFNCGKPGHTARMCRQ 18 (39)
T ss_dssp CBCTTTCCBSSCTTTCCS
T ss_pred CeeeccCCCCcccccCCC
Confidence 479999999999999985
No 27
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=49.80 E-value=5.4 Score=33.31 Aligned_cols=20 Identities=40% Similarity=0.786 Sum_probs=15.3
Q ss_pred ceeeccccCcCCCCcCCCCC
Q 039468 1261 RELHCSKCKGAGHNRKTCHV 1280 (1282)
Q Consensus 1261 r~~~CSrCk~~GHNkrTCp~ 1280 (1282)
+...|-+|++.||-.+.||.
T Consensus 32 ~~~~C~~Cg~~GH~~~~C~~ 51 (55)
T 1a1t_A 32 RKKGCWKCGKEGHQMKDCTE 51 (55)
T ss_dssp SCCBCTTTCCBSSCGGGCSS
T ss_pred CCCEeCCCCCcCCccCCCcC
Confidence 34678888888888888875
No 28
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=48.70 E-value=19 Score=32.84 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=33.4
Q ss_pred cCceEEEeecCCeEEEEeeec---CCCceEEEEEEeCCCCeEEEEeecCCCcCCCC
Q 039468 733 HGFTYCFKKNEGLRVTAKCKA---EGCPWRIHASRVPTTQLFQIKTMNGMHTCKAG 785 (1282)
Q Consensus 733 ~gF~~rvkKSdk~Rv~~~C~~---~GCpWrI~As~~~~s~~w~Ik~~~~eHnC~~~ 785 (1282)
.||.|...+....+...+|.. .+|+.+|.... . . | .....|||++.
T Consensus 26 ~Gy~Y~~~~~~~~~~yWrC~~~~~~kCrARi~T~~--~--~--~-~~~~~HnH~p~ 74 (87)
T 2rpr_A 26 ESFLYRKEKAAGEKVYWMCRDQARLGCRSRAITQG--H--R--I-MVMRSHCHQPD 74 (87)
T ss_dssp TTEEEEEEEECSSCEEEEEGGGTTSCCCCEEEEET--T--E--E-EECSCCSSCCC
T ss_pred CCEEEEeeecCCCcEEEEecCCCCCCCCEEEEEcC--C--C--E-ECCCCcCCCCc
Confidence 477887777777778899985 58999988753 1 2 2 24677999764
No 29
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=48.27 E-value=29 Score=32.04 Aligned_cols=70 Identities=10% Similarity=0.091 Sum_probs=47.3
Q ss_pred cccCCCeEEEEEEeCCeEeeCCCCcEEEeCCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEEEecCCCCceEEeec
Q 039468 524 EAMGKGKLILICQSGGKFTTANDGSLVYSGGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKYFLPNNNKTLITISG 603 (1282)
Q Consensus 524 ~~m~~~~i~~~c~~GG~~~~~~dG~~~Y~GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky~LP~~~~~Li~v~d 603 (1282)
..|..+.|.+.+... . -.+|+.....++.+++..+|+.+|...+|+....+++.|.-..++...+.+.+
T Consensus 3 ~~~~~~~v~l~I~~~-----~------~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~ 71 (97)
T 1wjn_A 3 SGSSGQLLTLKIKCS-----N------QPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELEN 71 (97)
T ss_dssp CCSSSCEEEEEEEES-----S------CSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCC
T ss_pred ccccCccEEEEEEec-----C------CCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCC
Confidence 345556666655432 0 01455666789999999999999999999998888888875433333444444
Q ss_pred h
Q 039468 604 D 604 (1282)
Q Consensus 604 D 604 (1282)
|
T Consensus 72 d 72 (97)
T 1wjn_A 72 D 72 (97)
T ss_dssp S
T ss_pred C
Confidence 4
No 30
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=46.72 E-value=6.1 Score=30.33 Aligned_cols=17 Identities=29% Similarity=0.811 Sum_probs=15.6
Q ss_pred eccccCcCCCCcCCCCC
Q 039468 1264 HCSKCKGAGHNRKTCHV 1280 (1282)
Q Consensus 1264 ~CSrCk~~GHNkrTCp~ 1280 (1282)
+|-+|++.||..+.||.
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 69999999999999984
No 31
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.47 E-value=9.4 Score=32.34 Aligned_cols=19 Identities=32% Similarity=0.747 Sum_probs=17.1
Q ss_pred ceeeccccCcCCCCcCCCC
Q 039468 1261 RELHCSKCKGAGHNRKTCH 1279 (1282)
Q Consensus 1261 r~~~CSrCk~~GHNkrTCp 1279 (1282)
+...|=+|++.||-.+.||
T Consensus 6 ~~~~C~kCGk~GH~~k~Cp 24 (55)
T 2ysa_A 6 SGYTCFRCGKPGHYIKNCP 24 (55)
T ss_dssp SSCCCTTTCCTTSCGGGCS
T ss_pred CCCccccCCCcCcccccCC
Confidence 3468999999999999998
No 32
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=43.08 E-value=8.9 Score=31.37 Aligned_cols=21 Identities=24% Similarity=0.841 Sum_probs=18.5
Q ss_pred CceeeccccCcCCCCcCCCCC
Q 039468 1260 KRELHCSKCKGAGHNRKTCHV 1280 (1282)
Q Consensus 1260 Kr~~~CSrCk~~GHNkrTCp~ 1280 (1282)
++..+|-+|++.||..+.||.
T Consensus 4 ~r~~~C~~Cg~~GH~a~~C~~ 24 (49)
T 2ec7_A 4 RKVIRCWNCGKEGHSARQCRA 24 (49)
T ss_dssp CCCCBCTTTCCBTCCTTTCCC
T ss_pred CCcCeeeecCCCCcChhhCcC
Confidence 456799999999999999984
No 33
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=42.61 E-value=8.9 Score=32.00 Aligned_cols=21 Identities=29% Similarity=0.819 Sum_probs=18.2
Q ss_pred CceeeccccCcCCCCcCCCCC
Q 039468 1260 KRELHCSKCKGAGHNRKTCHV 1280 (1282)
Q Consensus 1260 Kr~~~CSrCk~~GHNkrTCp~ 1280 (1282)
++..+|-+|++.||-.+.||.
T Consensus 10 ~~~~~C~~Cg~~GH~a~~C~~ 30 (55)
T 1a1t_A 10 RKTVKCFNCGKEGHIAKNCRA 30 (55)
T ss_dssp GGTCBCTTTCCBSSCGGGCSS
T ss_pred CCCcceeeeCCCCcChhhcCC
Confidence 455789999999999999974
No 34
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=42.01 E-value=15 Score=32.86 Aligned_cols=20 Identities=20% Similarity=0.594 Sum_probs=15.3
Q ss_pred ceeeccccCcCCCCcCCCCC
Q 039468 1261 RELHCSKCKGAGHNRKTCHV 1280 (1282)
Q Consensus 1261 r~~~CSrCk~~GHNkrTCp~ 1280 (1282)
+...|-+|++.||-.+.||.
T Consensus 45 ~~~~C~~Cg~~GH~ar~Cp~ 64 (74)
T 2li8_A 45 QPKKCHFCQSISHMVASCPL 64 (74)
T ss_dssp CCCCCTTTCCTTSCGGGCTT
T ss_pred CCCccCCcCCcCCccCcCcC
Confidence 34678888888888888875
No 35
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=38.86 E-value=63 Score=30.01 Aligned_cols=75 Identities=13% Similarity=0.243 Sum_probs=50.2
Q ss_pred cccCCCeEEEEEEeCCeEeeCCCCcEEEeCCceeEEEEcC--CCChHHHHHHHHHhcCCCCCceEEEEEecCCCCceEEe
Q 039468 524 EAMGKGKLILICQSGGKFTTANDGSLVYSGGDAHALSVNK--ESSFDELKLEMAEMWKYDPNSMIVKYFLPNNNKTLITI 601 (1282)
Q Consensus 524 ~~m~~~~i~~~c~~GG~~~~~~dG~~~Y~GG~t~~i~Vdr--~iSf~ef~~kL~e~~~~~~~~~~lky~LP~~~~~Li~v 601 (1282)
..|+..-+.+++..- .|..--+.|+. .++|.+++.-|.+.+.-. ....|.|- .+...-|.|
T Consensus 8 ~~M~a~~lVIRIk~p--------------~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~a-T~TAFeYE--DE~gDRITV 70 (106)
T 2npt_A 8 PAMENQVLVIRIKIP--------------NSGAVDWTVHSGPQLLFRDVLDVIGQVLPEA-TTTAFEYE--DEDGDRITV 70 (106)
T ss_dssp CCC--CCEEEEEEET--------------TTEEEEEEECC--CCCHHHHHHHHHHHSTTS-CCSEEEEE--CTTSCEEEE
T ss_pred cccccCceEEEEECC--------------CCCccccccCCcccccHHHHHHHHHHhCccc-eeeeeeec--cccCCeeEE
Confidence 456666666655432 12234467775 599999999999876432 33456664 445668999
Q ss_pred echHHHHHHHHhhc
Q 039468 602 SGDKDIRRLIDFHE 615 (1282)
Q Consensus 602 ~dD~Dl~~M~e~~~ 615 (1282)
.+|+.++.|++.+.
T Consensus 71 RSDeE~kAMlsyy~ 84 (106)
T 2npt_A 71 RSDEEMKAMLSYYY 84 (106)
T ss_dssp CSHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHH
Confidence 99999999999754
No 36
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=37.65 E-value=70 Score=30.64 Aligned_cols=66 Identities=15% Similarity=0.092 Sum_probs=46.5
Q ss_pred CeeeecccccccccCcceeeeeeecCCCCeEEEEEEEeccCCchhHHHHHHHHHHhhcCCceEEEEecCcchHHHH
Q 039468 903 PLIFLDSFPIKSKYQSSLLTATALDGNDEIFPVAFGVVDAVSDDNWHWFLLQLKSALSTCQSITFVTDRLGQLRAS 978 (1282)
Q Consensus 903 pVI~iD~TyltnkY~g~Ll~avGvD~n~~~~pvAfAvV~~Et~esw~WfLe~Lk~~m~~~~p~vIISD~~~gL~~A 978 (1282)
.++.+|.|+..++ +.++.+|..-+.. +++.+ .+++.+...-+|..+....+ |.+|.||+.....+.
T Consensus 3 ~~w~~D~t~~~~~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~f~s~ 68 (152)
T 3kks_A 3 HLWQMDNTHWNKT-----IIWVAVETNSGLV-EAQVI-PEETALQVALCILQLIQRYT---VLHLHSDNGPCFTAH 68 (152)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSSCHHHHHHHHHHHHHHSC---CSEEEECSCHHHHSH
T ss_pred cEEEEeeeeeCCE-----EEEEEEEcCCCcE-EEEEe-CCcCHHHHHHHHHHHHHHhC---CcEEecCCchHhhHH
Confidence 4778899987433 4566677766554 55555 47777777777776666665 889999999877543
No 37
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=37.63 E-value=39 Score=28.85 Aligned_cols=39 Identities=13% Similarity=0.249 Sum_probs=33.0
Q ss_pred EeCCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 551 YSGGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 551 Y~GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
..+|++..+.|+.+.+..+|+.+|.+.+++..+..++.|
T Consensus 7 ~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 3a9j_A 7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_dssp ETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred cCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 345677788999999999999999999999887777766
No 38
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=37.56 E-value=14 Score=31.34 Aligned_cols=21 Identities=24% Similarity=0.484 Sum_probs=18.2
Q ss_pred ceeeccccCcCCCCcCCCCCC
Q 039468 1261 RELHCSKCKGAGHNRKTCHVY 1281 (1282)
Q Consensus 1261 r~~~CSrCk~~GHNkrTCp~~ 1281 (1282)
+...|-+|++.||-.+.||.-
T Consensus 29 ~~~~C~~Cg~~GH~ar~C~~~ 49 (60)
T 1cl4_A 29 VPGLCPRCKRGKHWANECKSK 49 (60)
T ss_dssp CCCSCSSCSSCSSCSTTCCCT
T ss_pred CCcceeECCCCCCccCcCCCc
Confidence 346899999999999999863
No 39
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=37.55 E-value=11 Score=32.15 Aligned_cols=18 Identities=44% Similarity=1.018 Sum_probs=14.7
Q ss_pred eeccccCcCCCCcCCCCC
Q 039468 1263 LHCSKCKGAGHNRKTCHV 1280 (1282)
Q Consensus 1263 ~~CSrCk~~GHNkrTCp~ 1280 (1282)
.+|-+|++.||-.+.||.
T Consensus 31 ~~C~~Cg~~GH~ar~C~~ 48 (61)
T 2ihx_A 31 ERCQLCNGMGHNAKQCRK 48 (61)
T ss_dssp SBCTTTCCBSSCGGGCCC
T ss_pred CeeCCCCCCCCCcCCCcC
Confidence 568888888888888875
No 40
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=37.20 E-value=25 Score=32.09 Aligned_cols=39 Identities=8% Similarity=0.059 Sum_probs=34.1
Q ss_pred CCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEEEe
Q 039468 553 GGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKYFL 591 (1282)
Q Consensus 553 GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky~L 591 (1282)
|++...+.++.+++..+|+.+|.+++|+.++++++-|.-
T Consensus 13 ~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~ 51 (86)
T 4b6w_A 13 RMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLID 51 (86)
T ss_dssp SCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEEC
T ss_pred CCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEec
Confidence 555666889999999999999999999999999988863
No 41
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=37.16 E-value=47 Score=28.56 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=31.9
Q ss_pred CCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 553 GGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 553 GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
+|++..+.|+.+.+..+|+.+|.+..|+..+..++.|
T Consensus 12 ~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 48 (77)
T 2bwf_A 12 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY 48 (77)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEE
Confidence 5666778999999999999999999999887777765
No 42
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.18 E-value=15 Score=31.66 Aligned_cols=18 Identities=22% Similarity=0.641 Sum_probs=11.6
Q ss_pred eeccccCcCCCCcCCCCC
Q 039468 1263 LHCSKCKGAGHNRKTCHV 1280 (1282)
Q Consensus 1263 ~~CSrCk~~GHNkrTCp~ 1280 (1282)
..|-+|++.||-.+.||.
T Consensus 30 ~~C~~Cg~~GH~ar~Cp~ 47 (63)
T 2cqf_A 30 KKCHFCQSISHMVASCPL 47 (63)
T ss_dssp SCCTTTCCSSSCTTTCTG
T ss_pred CccCCcCCcCCccCcCCC
Confidence 456666666666666664
No 43
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.59 E-value=61 Score=28.14 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=31.6
Q ss_pred CCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 553 GGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 553 GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
+|++..+.|+.+.+..+|+.+|.+.+++..+..++.|
T Consensus 16 ~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 52 (81)
T 2dzi_A 16 QGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF 52 (81)
T ss_dssp TSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 4556678899999999999999999999888877766
No 44
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=35.52 E-value=13 Score=31.80 Aligned_cols=19 Identities=26% Similarity=0.630 Sum_probs=16.9
Q ss_pred eeeccccCcCCCCcCCCCC
Q 039468 1262 ELHCSKCKGAGHNRKTCHV 1280 (1282)
Q Consensus 1262 ~~~CSrCk~~GHNkrTCp~ 1280 (1282)
...|-+|++.||-.+.||.
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~ 22 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPK 22 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTT
T ss_pred CCcccccCCCCeehhhCcC
Confidence 4679999999999999984
No 45
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=35.20 E-value=40 Score=32.24 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=35.8
Q ss_pred EEEeCCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 549 LVYSGGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 549 ~~Y~GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
+....|++..+.|+.+.+..+|+.+|.+..++..+..++.|
T Consensus 14 vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 54 (114)
T 2kdi_A 14 AKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIW 54 (114)
T ss_dssp EEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE
Confidence 45567888889999999999999999999999888877766
No 46
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=34.56 E-value=66 Score=28.50 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=32.0
Q ss_pred CCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 553 GGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 553 GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
.|++..+.|+.+.+..+|+.+|.+..++..+..++.|
T Consensus 16 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~ 52 (87)
T 1wh3_A 16 DGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF 52 (87)
T ss_dssp TTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE
T ss_pred CCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEE
Confidence 4566678999999999999999999999888877766
No 47
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=34.55 E-value=35 Score=32.75 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=23.9
Q ss_pred CCCCcEECCHHHHHHHHHHHHHHcCceEEEeecC
Q 039468 710 TGVHQRFNNVHDFRDALYKYSVAHGFTYCFKKNE 743 (1282)
Q Consensus 710 l~VGm~F~S~eEfk~AI~~YAi~~gF~~rvkKSd 743 (1282)
-.|...|+|+|++. .||.++|..|.+..-.
T Consensus 60 ~qv~L~F~skE~Ai----ayAek~G~~y~V~ep~ 89 (108)
T 2lju_A 60 QQVCLSFTTRELAI----AYAVAHKIDYTVLQDN 89 (108)
T ss_dssp CCSCEEESSHHHHH----HHHHHTTCEEEEECSS
T ss_pred ccceEecCCHHHHH----HHHHHcCCEEEEecCC
Confidence 35789999998774 6899999999986543
No 48
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=34.43 E-value=33 Score=32.85 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=23.6
Q ss_pred CCCcEECCHHHHHHHHHHHHHHcCceEEEeecCC
Q 039468 711 GVHQRFNNVHDFRDALYKYSVAHGFTYCFKKNEG 744 (1282)
Q Consensus 711 ~VGm~F~S~eEfk~AI~~YAi~~gF~~rvkKSdk 744 (1282)
.|...|+|+|++. .||.++|..|.+..-..
T Consensus 53 qv~L~F~skE~Ai----ayAek~G~~y~V~ep~~ 82 (106)
T 2jya_A 53 QVKLTFETQEQAE----AYAQRKGIEYRVILPKE 82 (106)
T ss_dssp EEEEEESSHHHHH----HHHHHHTCEEEECCCTT
T ss_pred cceEecCCHHHHH----HHHHHcCCEEEEeCCCc
Confidence 3678999998774 68999999999865443
No 49
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.45 E-value=17 Score=31.27 Aligned_cols=20 Identities=30% Similarity=0.758 Sum_probs=17.5
Q ss_pred ceeeccccCcCCCCcCCCCC
Q 039468 1261 RELHCSKCKGAGHNRKTCHV 1280 (1282)
Q Consensus 1261 r~~~CSrCk~~GHNkrTCp~ 1280 (1282)
+...|-+|++.||..+.||.
T Consensus 6 r~~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 6 SGDRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp SCCCCSSSCCSSSCTTTCCS
T ss_pred CCCcccccCCCCcChhhCCC
Confidence 34689999999999999985
No 50
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=33.14 E-value=18 Score=36.62 Aligned_cols=20 Identities=20% Similarity=0.534 Sum_probs=16.5
Q ss_pred eeeccccCcCCCCcCCCCCC
Q 039468 1262 ELHCSKCKGAGHNRKTCHVY 1281 (1282)
Q Consensus 1262 ~~~CSrCk~~GHNkrTCp~~ 1281 (1282)
..+|-+|++.||-.+.||.-
T Consensus 119 ~~~C~~Cg~~GH~~r~Cp~~ 138 (148)
T 3ts2_A 119 PKKCHFCQSINHMVASCPLK 138 (148)
T ss_dssp CCCCTTTCCSSCCGGGCTTT
T ss_pred CCcccccCCcCCEeccCcCC
Confidence 46888899999999988864
No 51
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=33.10 E-value=56 Score=29.30 Aligned_cols=40 Identities=13% Similarity=0.122 Sum_probs=34.0
Q ss_pred EEeCCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 550 VYSGGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 550 ~Y~GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
...+|++..+.|+.+.+..+|+.+|.+.+++..+..++.|
T Consensus 11 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 50 (90)
T 4dwf_A 11 KTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 50 (90)
T ss_dssp EETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 3446778889999999999999999999999888777766
No 52
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=32.83 E-value=36 Score=31.67 Aligned_cols=42 Identities=12% Similarity=0.284 Sum_probs=34.8
Q ss_pred EEEeCCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEEE
Q 039468 549 LVYSGGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKYF 590 (1282)
Q Consensus 549 ~~Y~GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky~ 590 (1282)
+.|.+|+...+-|..+.++.|++++.|+++|++++++.+++.
T Consensus 14 Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~ 55 (90)
T 2al3_A 14 VLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQ 55 (90)
T ss_dssp EECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEET
T ss_pred EEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeC
Confidence 345578888888999999999999999999998877666654
No 53
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=32.46 E-value=52 Score=28.65 Aligned_cols=38 Identities=11% Similarity=0.211 Sum_probs=32.6
Q ss_pred eCCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 552 SGGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 552 ~GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
.+|++..+.|+.+.+..+|+.+|.+..++.++..++.|
T Consensus 12 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 49 (79)
T 3phx_B 12 NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (79)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEE
Confidence 35677788999999999999999999999887777765
No 54
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=32.40 E-value=47 Score=28.31 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=31.9
Q ss_pred CCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 553 GGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 553 GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
+|++..+.|+.+.+..+|+.+|.+.+++..+..++.|
T Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 1ndd_A 9 TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (76)
T ss_dssp TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 4667778999999999999999999999887777766
No 55
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=31.62 E-value=57 Score=29.30 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=32.5
Q ss_pred CCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 553 GGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 553 GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
+|++..+.|+.+.+..+|+.+|.+..++.++..++.|
T Consensus 20 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 56 (85)
T 2kd0_A 20 GGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIF 56 (85)
T ss_dssp TTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEE
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE
Confidence 6777778999999999999999999999888877765
No 56
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=31.48 E-value=52 Score=28.83 Aligned_cols=38 Identities=13% Similarity=0.272 Sum_probs=32.5
Q ss_pred eCCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 552 SGGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 552 ~GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
..|++..+.|+.+.+..+|+.+|.+.+++..+..++.|
T Consensus 11 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~ 48 (85)
T 3mtn_B 11 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEE
Confidence 35677788999999999999999999999877777765
No 57
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.64 E-value=65 Score=29.63 Aligned_cols=39 Identities=15% Similarity=0.320 Sum_probs=32.7
Q ss_pred EEEeCCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEE
Q 039468 549 LVYSGGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIV 587 (1282)
Q Consensus 549 ~~Y~GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~l 587 (1282)
+.|.+-....+.|+..+++.||+-.||+++++++..+.+
T Consensus 15 VNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~L 53 (91)
T 2daj_A 15 INFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLL 53 (91)
T ss_dssp EEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEE
T ss_pred EeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEE
Confidence 456667777889999999999999999999999876443
No 58
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=30.24 E-value=41 Score=33.24 Aligned_cols=70 Identities=13% Similarity=0.243 Sum_probs=46.1
Q ss_pred eeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEEEecCCCCceE--EeechHHHHH-HHHhhcCcCeEEEEEe
Q 039468 556 AHALSVNKESSFDELKLEMAEMWKYDPNSMIVKYFLPNNNKTLI--TISGDKDIRR-LIDFHEDSGTVDVYVM 625 (1282)
Q Consensus 556 t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky~LP~~~~~Li--~v~dD~Dl~~-M~e~~~~~~~v~IYve 625 (1282)
...+.|-+++++.+|...+.+.+|+..+.+.++....-.+.+.+ .+..+.++.. +...........||++
T Consensus 57 ~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~d~~~t~~~~~~~~~~~~~~~~l~lE 129 (130)
T 2kvr_A 57 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSDNENPWTIFLE 129 (130)
T ss_dssp CEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCCBTTBCCCCCCCTTGGGTSBTHHHHTSCSSEEEEEE
T ss_pred cceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecCCCCCCCCCCCCccccHHHHHHHhhcCCCCcEEEEe
Confidence 45578999999999999999999999888888877764443322 1222333222 2222333445788876
No 59
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=29.70 E-value=48 Score=29.11 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=32.8
Q ss_pred eCCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 552 SGGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 552 ~GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
..|++..+.|+.+.|..+|+.+|.+.+++..+..++.|
T Consensus 11 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~ 48 (85)
T 3n3k_B 11 LMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp GGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 35677788999999999999999999999888877776
No 60
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=29.57 E-value=68 Score=28.55 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=32.9
Q ss_pred EeCCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 551 YSGGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 551 Y~GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
..+|.+..+.|+.+.+..+|+.+|.+.+++..+..++-|
T Consensus 24 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 62 (88)
T 4eew_A 24 TLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 62 (88)
T ss_dssp ETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred cCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 345667778999999999999999999999888777766
No 61
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=29.07 E-value=71 Score=28.67 Aligned_cols=40 Identities=10% Similarity=0.070 Sum_probs=34.4
Q ss_pred EEeCCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 550 VYSGGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 550 ~Y~GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
....|++..+.|+.+.+..+|+.+|.+..|+.+++.++-|
T Consensus 16 k~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 55 (84)
T 2kk8_A 16 ENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIV 55 (84)
T ss_dssp EETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 3446788889999999999999999999999888877766
No 62
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=28.46 E-value=22 Score=35.86 Aligned_cols=20 Identities=30% Similarity=0.745 Sum_probs=17.9
Q ss_pred ceeeccccCcCCCCcCCCCC
Q 039468 1261 RELHCSKCKGAGHNRKTCHV 1280 (1282)
Q Consensus 1261 r~~~CSrCk~~GHNkrTCp~ 1280 (1282)
+..+|-+|++.||-.+.||.
T Consensus 96 ~~~~C~~Cg~~GH~a~~C~~ 115 (148)
T 3ts2_A 96 GGDRCYNCGGLDHHAKECKL 115 (148)
T ss_dssp CSCCCTTTCCSSCCGGGCCS
T ss_pred CCCcccEeCCccchhhhCCC
Confidence 35789999999999999986
No 63
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=28.37 E-value=64 Score=29.19 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=33.6
Q ss_pred EEeCCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 550 VYSGGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 550 ~Y~GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
....|++..+.|+.+.+..+|+.+|.+.+++..+..++.|
T Consensus 7 k~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~ 46 (96)
T 3k9o_B 7 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 46 (96)
T ss_dssp EETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEE
Confidence 3346777888999999999999999999999887777766
No 64
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=27.98 E-value=23 Score=31.62 Aligned_cols=20 Identities=30% Similarity=0.806 Sum_probs=17.8
Q ss_pred ceeeccccCcCCCCcCCCCC
Q 039468 1261 RELHCSKCKGAGHNRKTCHV 1280 (1282)
Q Consensus 1261 r~~~CSrCk~~GHNkrTCp~ 1280 (1282)
+..+|-+|++.||-.+.|+.
T Consensus 23 r~~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 23 KGDRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp TTSCCTTTCCSSSCTTTCSS
T ss_pred CCCcccccCCcCcCcccCCC
Confidence 45689999999999999984
No 65
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=27.57 E-value=69 Score=29.29 Aligned_cols=39 Identities=13% Similarity=0.249 Sum_probs=33.1
Q ss_pred EeCCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 551 YSGGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 551 Y~GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
..+|++..+.|+.+.+..+|+.+|.+.+++..+..++.|
T Consensus 7 ~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~ 45 (98)
T 1yx5_B 7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (98)
T ss_dssp ETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred eCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 345667788999999999999999999999888877766
No 66
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=27.40 E-value=55 Score=29.00 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=31.4
Q ss_pred CCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 553 GGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 553 GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
+|.+..+.|+.+.+..+|+.+|.+.+++.....++.|
T Consensus 21 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 57 (88)
T 3dbh_I 21 TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 57 (88)
T ss_dssp TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE
Confidence 4566678999999999999999999999877776666
No 67
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=26.61 E-value=69 Score=28.87 Aligned_cols=37 Identities=14% Similarity=0.281 Sum_probs=31.8
Q ss_pred CCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 553 GGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 553 GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
+|++..+.|+.+.+..+|+.+|.+.+|+..+..++.|
T Consensus 26 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 62 (91)
T 3v6c_B 26 TGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 62 (91)
T ss_dssp TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE
Confidence 4566778999999999999999999999877777766
No 68
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=25.97 E-value=81 Score=27.38 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=31.9
Q ss_pred CCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 553 GGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 553 GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
.|++..+.|+.+.+..+|+.++++..++..++.++.|
T Consensus 12 ~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~ 48 (79)
T 2uyz_B 12 DSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 48 (79)
T ss_dssp TCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE
Confidence 4667778999999999999999999999888777755
No 69
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=25.95 E-value=70 Score=29.40 Aligned_cols=37 Identities=16% Similarity=0.314 Sum_probs=31.4
Q ss_pred CCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 553 GGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 553 GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
.|++..+.|+.+.+..+|+.+|.+.+++..+..++.|
T Consensus 31 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 67 (98)
T 4hcn_B 31 TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 67 (98)
T ss_dssp TCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 4566678899999999999999999999877777765
No 70
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=25.34 E-value=73 Score=28.66 Aligned_cols=39 Identities=10% Similarity=0.251 Sum_probs=33.5
Q ss_pred EeCCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 551 YSGGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 551 Y~GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
-..|++..+.|+.+.+..+|+.+|.+.+++..+..++.|
T Consensus 16 ~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 54 (88)
T 1sif_A 16 TLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF 54 (88)
T ss_dssp ETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred eCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEE
Confidence 346777888999999999999999999999888877766
No 71
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=25.23 E-value=1.2e+02 Score=29.49 Aligned_cols=65 Identities=20% Similarity=0.179 Sum_probs=45.5
Q ss_pred CeeeecccccccccCcceeeeeeecCCCCeEEEEEEEeccCCchhHHHHHHHHHHhhcCCceEEEEecCcchHHH
Q 039468 903 PLIFLDSFPIKSKYQSSLLTATALDGNDEIFPVAFGVVDAVSDDNWHWFLLQLKSALSTCQSITFVTDRLGQLRA 977 (1282)
Q Consensus 903 pVI~iD~TyltnkY~g~Ll~avGvD~n~~~~pvAfAvV~~Et~esw~WfLe~Lk~~m~~~~p~vIISD~~~gL~~ 977 (1282)
.++.+|.|+..++ +.++.+|..-+.. +++.+ .+++.+.-.-+|..+....+ +.+|.||+.....+
T Consensus 10 ~~w~~D~t~~~g~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~~---~~~i~sD~G~~f~s 74 (163)
T 3l3u_A 10 GIWQLDCTHLEGK-----VILVAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRWP---VKTVHTDNGSNFTS 74 (163)
T ss_dssp TEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSCCHHHHHHHHHHHHHHSC---CCEEEECCCGGGGS
T ss_pred CEEEEEecccCCc-----EEEEEEecCCCcE-EEEEe-CCCcHHHHHHHHHHHHHHcC---CcEEeecChHhhhh
Confidence 5788999998654 4666777766644 56655 56677777777766666655 36899999987643
No 72
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=24.92 E-value=1.4e+02 Score=36.19 Aligned_cols=72 Identities=13% Similarity=0.183 Sum_probs=51.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEEEecCCCCceEEeechHHHH---HHHHhhcCcCeEEEEEeec
Q 039468 556 AHALSVNKESSFDELKLEMAEMWKYDPNSMIVKYFLPNNNKTLITISGDKDIR---RLIDFHEDSGTVDVYVMVG 627 (1282)
Q Consensus 556 t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky~LP~~~~~Li~v~dD~Dl~---~M~e~~~~~~~v~IYve~~ 627 (1282)
.+.+.|.+++++.+|...+.+.+|+..+.++++...+..+.+.++-.-|.+.. .+.+.........|||+..
T Consensus 37 ~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~~~~~~~lflE~~ 111 (530)
T 2ylm_A 37 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSDNENPWTIFLETV 111 (530)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHTSCSSEEEEEEEC
T ss_pred cceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhccCCceEEEEEec
Confidence 45679999999999999999999999899999888876555433322332222 2334333455689999984
No 73
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=24.59 E-value=96 Score=27.80 Aligned_cols=37 Identities=11% Similarity=0.208 Sum_probs=31.5
Q ss_pred CCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 553 GGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 553 GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
.|++..+.|+.+.+..+|+.+|.+..++..+..++.|
T Consensus 13 ~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 49 (88)
T 2hj8_A 13 KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (88)
T ss_dssp TSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEES
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 3566678999999999999999999999888877765
No 74
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=24.28 E-value=81 Score=28.34 Aligned_cols=38 Identities=13% Similarity=0.224 Sum_probs=32.7
Q ss_pred eCCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 552 SGGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 552 ~GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
..|++..+.|+.+.+..+|+.+|.+.+++..+..++-|
T Consensus 8 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 45 (88)
T 4fbj_B 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (88)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE
Confidence 35777788999999999999999999999877777766
No 75
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.98 E-value=1.1e+02 Score=27.42 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=29.3
Q ss_pred ceeEEEEcCC-----CChHHHHHHHHHhcCCCCCceEEEE
Q 039468 555 DAHALSVNKE-----SSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 555 ~t~~i~Vdr~-----iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
.+..+.|+.+ .+..+|+.+|.+.+++..+..+|.|
T Consensus 17 ~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~ 56 (92)
T 1wxv_A 17 EKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIF 56 (92)
T ss_dssp SEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred EEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 3445788885 9999999999999999888888876
No 76
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=23.95 E-value=91 Score=28.39 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=31.0
Q ss_pred CceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 554 GDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 554 G~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
|++..+.|+.+.+..+|+.+|.+..++..++.++.|
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 62 (93)
T 2l7r_A 27 QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLL 62 (93)
T ss_dssp SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEE
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEE
Confidence 556678899999999999999999999887777765
No 77
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=23.82 E-value=1.7e+02 Score=28.33 Aligned_cols=59 Identities=14% Similarity=0.223 Sum_probs=43.6
Q ss_pred CCCeEEEEEEeCCeEeeCCCCcEEEeCCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 527 GKGKLILICQSGGKFTTANDGSLVYSGGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 527 ~~~~i~~~c~~GG~~~~~~dG~~~Y~GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
++.+|.+.....|.+.. .+....|++..+.|+.+.+..+|+.+|.+..++..+..++.|
T Consensus 63 ~~~~l~l~~~~~~~~~i----~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~ 121 (152)
T 3b08_A 63 KESTLHLVLRLRGGMQI----FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121 (152)
T ss_dssp TTCEEEEEECCTTCEEE----EEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCCeeEEEeecccccce----eeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEE
Confidence 45567776665544321 134446778889999999999999999999999887777765
No 78
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=22.51 E-value=1.2e+02 Score=28.58 Aligned_cols=36 Identities=14% Similarity=0.316 Sum_probs=31.2
Q ss_pred CceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 554 GDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 554 G~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
|++..+.|+.+.+..+|+.+|.+.+++..+..++.|
T Consensus 45 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 80 (111)
T 2ojr_A 45 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE
Confidence 456678899999999999999999999888877766
No 79
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=22.38 E-value=1e+02 Score=28.78 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=31.7
Q ss_pred CCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 553 GGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 553 GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
+|++..+.|+.+.+..+|+.+|.+..|+..+..++.|
T Consensus 32 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 68 (106)
T 1ttn_A 32 TGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF 68 (106)
T ss_dssp TTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE
Confidence 4566678999999999999999999999888877766
No 80
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=22.36 E-value=1e+02 Score=28.36 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=32.2
Q ss_pred CCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 553 GGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 553 GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
.|++..+.|+.+.+..+|+.++++..|+..++.+|.|
T Consensus 30 ~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif 66 (97)
T 1wyw_B 30 DSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 66 (97)
T ss_dssp TCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE
Confidence 4667778999999999999999999999888877766
No 81
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=21.94 E-value=1.4e+02 Score=27.29 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=29.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 556 AHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 556 t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
+..+.|+.+.+..+|+.+|.+..++..++.++.|
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 59 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYY 59 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 5668899999999999999999999888877765
No 82
>3njn_A Peptidase; structural genomics, autocatalysis, PSI- protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 1.25A {Shewanella oneidensis} PDB: 3n55_A 2ai4_A 3njm_A 3nji_A 3njf_A 3njg_A 3njk_A 3njl_A 3njj_A 3njh_A
Probab=21.79 E-value=45 Score=32.28 Aligned_cols=76 Identities=25% Similarity=0.388 Sum_probs=44.4
Q ss_pred CCCcEEEEEEEEeeCCCCCceEEEEeccccccCCCCCCCCccccccceeeeeee---CCCCCC--------CcCCCCCCC
Q 039468 279 SPNFKVRLTLDVKQGGGPNSQFYLIDMGSCWKNDGSPCNGDVFTDVTRYSEMII---NPRTPA--------WCSPTAQKN 347 (1282)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--------~~~~~~~~~ 347 (1282)
.|-|+|.++|+ .+- -+|-.-| -+|.||+|+|+. |- ..+|+ +++|+. .-.|-.. .
T Consensus 11 ~~~f~v~VtL~--n~e---p~F~Yt~------~~G~~~tG~v~V--t~-~ttItY~L~d~t~kGl~F~Ga~fttPfd~-~ 75 (119)
T 3njn_A 11 AQFIKVNVTLE--NGE---PVFIYTD------ANGQVCQGDITV--TQ-AGTITYLLNDQTLKGLKFVGVGFVTPFDG-I 75 (119)
T ss_dssp EEEEEEEEEEE--TTE---EEEEEEC------TTSCEECCCEEE--SS-SEEEEEEEEECSSSCCEEEEEEESSTTSS-S
T ss_pred cceEEEEEEEe--CCC---cEEEEEc------cCCCCcCCCEEE--ee-cceEEEEeccccCCCcEEEcceecccccc-c
Confidence 47899999996 433 4454333 488999999974 33 66664 444421 1111110 0
Q ss_pred CCCccccCCCceeeccCCCCCC
Q 039468 348 CPPYHITPHNKKIYRNDTANFP 369 (1282)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~ 369 (1282)
=--|-+..||..|.=.|+.+=|
T Consensus 76 Idsv~iS~dG~~i~lvD~D~~~ 97 (119)
T 3njn_A 76 IDAVTISSDGMLVQLVDLDKTP 97 (119)
T ss_dssp CCEEEECTTSSEEEEEECCCSC
T ss_pred eeEEEEcCCCcEEEEEEcCCCC
Confidence 0124456888888887776643
No 83
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=21.36 E-value=1.3e+02 Score=25.97 Aligned_cols=37 Identities=8% Similarity=0.230 Sum_probs=32.0
Q ss_pred CCceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 553 GGDAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 553 GG~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
.|+...+.|.++.++..|+...+++.|++.++++|.|
T Consensus 10 ~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f 46 (72)
T 1wm3_A 10 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 46 (72)
T ss_dssp TSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE
Confidence 4667778999999999999999999999888876666
No 84
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=21.33 E-value=1.7e+02 Score=25.94 Aligned_cols=35 Identities=14% Similarity=0.393 Sum_probs=30.2
Q ss_pred ceeEE-EEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 555 DAHAL-SVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 555 ~t~~i-~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
++..+ .|+.+.+..+|+.+|.+..++..+..++.|
T Consensus 19 ~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 54 (89)
T 1wy8_A 19 KTCTIEDVSRKATIEELRERVWALFDVRPECQRLFY 54 (89)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEE
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 46668 499999999999999999999888877766
No 85
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=20.48 E-value=1.8e+02 Score=30.06 Aligned_cols=66 Identities=11% Similarity=0.077 Sum_probs=44.5
Q ss_pred CeeeecccccccccCcceeeeeeecCCCCeEEEEEEEeccCCchhHHHHHHHHHHhhcCCceEEEEecCcchHHHH
Q 039468 903 PLIFLDSFPIKSKYQSSLLTATALDGNDEIFPVAFGVVDAVSDDNWHWFLLQLKSALSTCQSITFVTDRLGQLRAS 978 (1282)
Q Consensus 903 pVI~iD~TyltnkY~g~Ll~avGvD~n~~~~pvAfAvV~~Et~esw~WfLe~Lk~~m~~~~p~vIISD~~~gL~~A 978 (1282)
.++.+|-|+..++ +.++.+|..-+.. +++. +.+++.+...-+|..+....+ |.+|.||+......+
T Consensus 61 ~~w~~D~t~~~~~-----y~~~~iD~~Sr~~-~~~~-~~~~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~F~s~ 126 (219)
T 3hph_A 61 DHWQVDYTHYEDK-----IILVWVETNSGLI-YAER-VKGETGQEFRVQTMKWYAMFA---PKSLQSDNGPAFVAE 126 (219)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEE-ESCCCHHHHHHHHHHHHHHHC---CCEEEECCCHHHHSH
T ss_pred ceEEEEEecCCCE-----EEEEEEeCCCCcE-EEEE-eCCCCHHHHHHHHHHHHHHhC---CcEEEeCCCchhhhH
Confidence 4677888866543 4566777766655 5555 456666666666666666655 789999999877644
No 86
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=20.28 E-value=1.4e+02 Score=27.67 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=32.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEEEec
Q 039468 556 AHALSVNKESSFDELKLEMAEMWKYDPNSMIVKYFLP 592 (1282)
Q Consensus 556 t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky~LP 592 (1282)
+..+.|+.+++..+|+.+|.+++|+.+++.++-|.-.
T Consensus 28 ~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~ 64 (97)
T 2kj6_A 28 SADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDD 64 (97)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECS
T ss_pred EEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecC
Confidence 4557899999999999999999999999988888643
No 87
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=20.24 E-value=1.6e+02 Score=26.11 Aligned_cols=37 Identities=11% Similarity=0.128 Sum_probs=31.1
Q ss_pred CC-ceeEEEEcCCCChHHHHHHHHHhcCCCCCceEEEE
Q 039468 553 GG-DAHALSVNKESSFDELKLEMAEMWKYDPNSMIVKY 589 (1282)
Q Consensus 553 GG-~t~~i~Vdr~iSf~ef~~kL~e~~~~~~~~~~lky 589 (1282)
.| +...+.|.++..+..|+...+++.|++.++++|.|
T Consensus 16 ~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f 53 (79)
T 3a4r_A 16 EKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF 53 (79)
T ss_dssp STTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE
Confidence 45 36678899999999999999999999888766665
No 88
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=20.15 E-value=22 Score=30.12 Aligned_cols=18 Identities=44% Similarity=0.822 Sum_probs=0.0
Q ss_pred eeccccCcCCCCcCCCCC
Q 039468 1263 LHCSKCKGAGHNRKTCHV 1280 (1282)
Q Consensus 1263 ~~CSrCk~~GHNkrTCp~ 1280 (1282)
..|-+|++.||-.+.||.
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~ 19 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHE 19 (60)
T ss_dssp ------------------
T ss_pred CccccCCCCCcCHhhCcC
Confidence 369999999999999986
Done!