Query 039475
Match_columns 286
No_of_seqs 246 out of 2026
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 10:01:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 99.8 1.5E-19 3.4E-24 178.1 9.1 219 1-244 483-730 (889)
2 PLN00113 leucine-rich repeat r 99.6 7.9E-16 1.7E-20 156.1 10.6 192 37-244 69-297 (968)
3 PLN00113 leucine-rich repeat r 99.6 1.8E-15 3.8E-20 153.6 10.3 187 36-244 117-321 (968)
4 KOG0444 Cytoskeletal regulator 99.6 3.3E-17 7.1E-22 150.9 -2.8 179 37-244 55-235 (1255)
5 PLN03210 Resistant to P. syrin 99.5 3.4E-14 7.5E-19 145.9 12.9 176 1-183 490-715 (1153)
6 KOG0617 Ras suppressor protein 99.5 9.1E-16 2E-20 120.9 -0.6 137 37-183 33-184 (264)
7 KOG0444 Cytoskeletal regulator 99.4 4.4E-15 9.5E-20 137.1 -2.4 135 38-181 104-254 (1255)
8 KOG0617 Ras suppressor protein 99.4 1.8E-14 3.9E-19 113.7 -4.1 156 56-244 29-186 (264)
9 KOG0472 Leucine-rich repeat pr 99.3 1.1E-13 2.5E-18 121.9 -0.4 198 38-244 184-541 (565)
10 KOG0472 Leucine-rich repeat pr 99.3 4.8E-14 1E-18 124.2 -4.9 178 43-244 74-265 (565)
11 PLN03210 Resistant to P. syrin 99.3 2.4E-11 5.3E-16 125.1 12.2 83 39-131 613-699 (1153)
12 KOG0618 Serine/threonine phosp 99.2 5.5E-12 1.2E-16 121.1 0.6 88 35-132 239-328 (1081)
13 KOG0532 Leucine-rich repeat (L 99.1 8.2E-12 1.8E-16 114.5 -3.4 166 44-244 82-247 (722)
14 cd00116 LRR_RI Leucine-rich re 99.0 5.4E-10 1.2E-14 99.1 7.0 185 38-245 82-292 (319)
15 KOG4194 Membrane glycoprotein 99.0 1.3E-10 2.8E-15 107.1 2.6 189 39-244 175-405 (873)
16 KOG4194 Membrane glycoprotein 99.0 3.5E-10 7.6E-15 104.3 3.5 144 38-185 126-306 (873)
17 KOG0618 Serine/threonine phosp 99.0 1.3E-10 2.8E-15 111.9 0.6 110 112-244 379-489 (1081)
18 PRK15370 E3 ubiquitin-protein 98.9 4.2E-09 9.2E-14 103.2 10.3 118 35-182 197-314 (754)
19 cd00116 LRR_RI Leucine-rich re 98.9 2.8E-09 6.1E-14 94.5 6.1 184 39-245 53-264 (319)
20 PF14580 LRR_9: Leucine-rich r 98.9 1.3E-09 2.8E-14 88.2 3.4 101 58-180 17-121 (175)
21 KOG4658 Apoptotic ATPase [Sign 98.8 4.4E-09 9.6E-14 104.6 6.2 105 38-160 546-653 (889)
22 PRK15370 E3 ubiquitin-protein 98.8 2E-08 4.4E-13 98.4 8.2 127 36-182 219-356 (754)
23 KOG4237 Extracellular matrix p 98.7 2.2E-09 4.8E-14 94.9 -0.7 192 34-244 64-359 (498)
24 PF14580 LRR_9: Leucine-rich r 98.7 2.6E-08 5.6E-13 80.7 5.0 127 36-184 18-152 (175)
25 PRK15387 E3 ubiquitin-protein 98.7 1.4E-07 3E-12 92.5 10.6 112 36-166 221-359 (788)
26 COG4886 Leucine-rich repeat (L 98.6 2.6E-08 5.5E-13 91.4 4.4 109 54-182 110-219 (394)
27 KOG0532 Leucine-rich repeat (L 98.6 5.9E-09 1.3E-13 96.1 0.1 130 43-184 104-246 (722)
28 COG4886 Leucine-rich repeat (L 98.5 8.5E-08 1.8E-12 88.0 4.7 173 38-244 117-290 (394)
29 PLN03150 hypothetical protein; 98.5 1.9E-07 4E-12 90.6 7.0 102 61-181 419-524 (623)
30 PRK15387 E3 ubiquitin-protein 98.5 2.3E-07 5.1E-12 90.9 6.1 31 150-183 403-433 (788)
31 PF13855 LRR_8: Leucine rich r 98.4 3.5E-07 7.5E-12 60.8 3.9 57 90-160 2-60 (61)
32 KOG3665 ZYG-1-like serine/thre 98.3 3.1E-07 6.7E-12 89.4 2.9 134 88-243 121-262 (699)
33 PLN03150 hypothetical protein; 98.3 2.3E-06 5E-11 83.1 8.6 104 39-161 420-527 (623)
34 KOG4237 Extracellular matrix p 98.3 2.1E-07 4.5E-12 82.6 1.0 121 50-181 59-197 (498)
35 KOG1259 Nischarin, modulator o 98.2 3.7E-07 8E-12 78.6 0.2 114 58-183 282-410 (490)
36 KOG3207 Beta-tubulin folding c 98.1 6.8E-07 1.5E-11 80.3 0.9 82 37-125 121-206 (505)
37 KOG1259 Nischarin, modulator o 98.1 4E-07 8.6E-12 78.4 -0.7 132 85-244 280-412 (490)
38 PF13855 LRR_8: Leucine rich r 98.1 2.3E-06 5E-11 56.8 2.8 57 60-125 1-58 (61)
39 PF12799 LRR_4: Leucine Rich r 98.0 8.8E-06 1.9E-10 50.2 3.8 32 90-125 2-33 (44)
40 PF12799 LRR_4: Leucine Rich r 97.9 9.3E-06 2E-10 50.1 2.9 39 117-165 2-40 (44)
41 KOG3665 ZYG-1-like serine/thre 97.8 8.9E-06 1.9E-10 79.4 2.5 106 37-161 122-232 (699)
42 PRK15386 type III secretion pr 97.6 0.00013 2.8E-09 66.5 6.7 28 150-179 157-184 (426)
43 KOG0531 Protein phosphatase 1, 97.6 1.3E-05 2.7E-10 74.3 -0.9 105 56-182 91-196 (414)
44 KOG3207 Beta-tubulin folding c 97.5 9.4E-06 2E-10 73.2 -1.9 190 34-244 143-339 (505)
45 PRK15386 type III secretion pr 97.3 0.00067 1.5E-08 62.0 7.0 86 56-171 48-137 (426)
46 KOG0531 Protein phosphatase 1, 97.3 4E-05 8.7E-10 70.9 -1.4 105 59-185 71-175 (414)
47 KOG1909 Ran GTPase-activating 97.2 0.00015 3.2E-09 63.9 1.8 198 37-244 30-254 (382)
48 KOG1859 Leucine-rich repeat pr 97.2 1.4E-05 3.1E-10 76.2 -5.4 108 83-214 181-289 (1096)
49 KOG4579 Leucine-rich repeat (L 97.0 0.0001 2.2E-09 56.7 -0.8 93 56-167 49-141 (177)
50 KOG1859 Leucine-rich repeat pr 97.0 3.4E-05 7.4E-10 73.8 -4.6 119 42-183 169-290 (1096)
51 KOG1909 Ran GTPase-activating 97.0 0.00031 6.8E-09 61.8 1.6 201 51-283 21-247 (382)
52 KOG4579 Leucine-rich repeat (L 96.9 6.2E-05 1.3E-09 57.9 -2.7 85 84-182 48-133 (177)
53 KOG1644 U2-associated snRNP A' 96.6 0.0027 5.9E-08 52.1 3.9 105 88-212 41-148 (233)
54 PF00560 LRR_1: Leucine Rich R 96.3 0.0019 4.1E-08 33.3 1.0 22 150-171 1-22 (22)
55 PF00560 LRR_1: Leucine Rich R 96.2 0.0021 4.5E-08 33.2 0.7 22 90-115 1-22 (22)
56 KOG1644 U2-associated snRNP A' 95.9 0.014 3E-07 48.1 4.5 105 59-184 41-152 (233)
57 KOG2982 Uncharacterized conser 95.9 0.0033 7.2E-08 54.6 1.0 17 226-242 244-260 (418)
58 KOG2739 Leucine-rich acidic nu 95.4 0.0084 1.8E-07 51.0 1.7 89 81-184 35-128 (260)
59 KOG2982 Uncharacterized conser 95.3 0.0067 1.4E-07 52.8 1.0 63 168-237 220-285 (418)
60 KOG2120 SCF ubiquitin ligase, 95.0 0.0037 7.9E-08 54.4 -1.4 62 146-214 310-373 (419)
61 KOG2120 SCF ubiquitin ligase, 94.6 0.0036 7.8E-08 54.4 -2.6 156 60-241 185-373 (419)
62 KOG2123 Uncharacterized conser 94.6 0.005 1.1E-07 53.1 -1.8 75 89-179 19-95 (388)
63 PF13306 LRR_5: Leucine rich r 94.1 0.17 3.7E-06 38.2 6.1 99 56-178 8-109 (129)
64 COG5238 RNA1 Ran GTPase-activa 93.9 0.045 9.7E-07 47.2 2.6 107 51-165 21-136 (388)
65 KOG2739 Leucine-rich acidic nu 93.9 0.034 7.5E-07 47.3 1.9 110 53-184 36-155 (260)
66 PF13504 LRR_7: Leucine rich r 93.7 0.049 1.1E-06 26.1 1.5 16 150-165 2-17 (17)
67 PF13504 LRR_7: Leucine rich r 93.4 0.052 1.1E-06 26.0 1.3 16 90-109 2-17 (17)
68 KOG2123 Uncharacterized conser 93.0 0.0094 2E-07 51.4 -2.8 103 58-182 17-127 (388)
69 smart00369 LRR_TYP Leucine-ric 92.6 0.088 1.9E-06 28.0 1.6 20 148-167 1-20 (26)
70 smart00370 LRR Leucine-rich re 92.6 0.088 1.9E-06 28.0 1.6 20 148-167 1-20 (26)
71 KOG0473 Leucine-rich repeat pr 92.4 0.0041 9E-08 52.2 -5.6 86 56-161 38-123 (326)
72 COG5238 RNA1 Ran GTPase-activa 92.2 0.063 1.4E-06 46.3 1.2 196 36-244 29-255 (388)
73 KOG0473 Leucine-rich repeat pr 89.9 0.009 2E-07 50.2 -5.9 61 54-124 59-119 (326)
74 smart00369 LRR_TYP Leucine-ric 88.6 0.33 7.1E-06 25.7 1.6 19 89-111 2-20 (26)
75 smart00370 LRR Leucine-rich re 88.6 0.33 7.1E-06 25.7 1.6 19 89-111 2-20 (26)
76 PF13306 LRR_5: Leucine rich r 85.4 1.7 3.7E-05 32.5 4.7 83 81-180 4-89 (129)
77 KOG1947 Leucine rich repeat pr 73.6 2.2 4.7E-05 39.7 2.1 102 135-244 198-308 (482)
78 smart00365 LRR_SD22 Leucine-ri 71.4 3.1 6.8E-05 22.2 1.5 17 148-164 1-17 (26)
79 KOG3864 Uncharacterized conser 69.6 0.74 1.6E-05 38.1 -1.8 86 150-244 102-189 (221)
80 smart00364 LRR_BAC Leucine-ric 63.2 4.5 9.8E-05 21.7 1.1 17 90-110 3-19 (26)
81 PF13516 LRR_6: Leucine Rich r 55.2 7.7 0.00017 19.8 1.1 14 149-162 2-15 (24)
82 smart00368 LRR_RI Leucine rich 50.1 22 0.00049 19.0 2.5 15 231-245 2-16 (28)
83 KOG3864 Uncharacterized conser 34.6 18 0.0004 30.1 0.9 73 163-245 92-166 (221)
84 KOG1947 Leucine rich repeat pr 26.2 46 0.00099 30.7 2.1 14 146-159 292-305 (482)
85 smart00367 LRR_CC Leucine-rich 24.5 64 0.0014 16.6 1.6 8 117-124 3-10 (26)
86 KOG4341 F-box protein containi 23.5 53 0.0012 30.5 1.9 62 57-125 291-355 (483)
87 KOG4341 F-box protein containi 22.9 49 0.0011 30.8 1.5 67 170-243 370-438 (483)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.79 E-value=1.5e-19 Score=178.05 Aligned_cols=219 Identities=26% Similarity=0.261 Sum_probs=157.7
Q ss_pred CchHHHHHHHHhcc-----cceEEEecCCCCCCccccccccCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCC
Q 039475 1 MHDIVHLFAQYLTR-----REFAAIEVDGDENPLSLTNSCQEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQS 75 (286)
Q Consensus 1 mHDlv~dla~~~a~-----~e~~~~~~~~~~~~~~~~~~~~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~ 75 (286)
|||+|||+|+++|+ +++++......... ..-......+|+++++.+.+..++... ..++|++|.+.++.....
T Consensus 483 mHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~-~~~~~~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~ 560 (889)
T KOG4658|consen 483 MHDVVREMALWIASDFGKQEENQIVSDGVGLSE-IPQVKSWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLL 560 (889)
T ss_pred eeHHHHHHHHHHhccccccccceEEECCcCccc-cccccchhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhh
Confidence 89999999999999 67655544311110 000123467899999999886666554 355899999999863111
Q ss_pred CcCccchhhhcCCCCCcEEEeecccCCcc-CcccCccccCCCCCcEEecccccccCCCCCCCCCcccccccccccCCCEE
Q 039475 76 AASPVLQGLFDQLTCLRALKIEELWYGDQ-TIEIPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHL 154 (286)
Q Consensus 76 ~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~-i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L 154 (286)
. +...+|..++.||||||++ |. +..+|++|++|.|||||++++ +.++.||.++++|++|.+|
T Consensus 561 ~---is~~ff~~m~~LrVLDLs~----~~~l~~LP~~I~~Li~LryL~L~~----------t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 561 E---ISGEFFRSLPLLRVLDLSG----NSSLSKLPSSIGELVHLRYLDLSD----------TGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred h---cCHHHHhhCcceEEEECCC----CCccCcCChHHhhhhhhhcccccC----------CCccccchHHHHHHhhhee
Confidence 1 1556789999999999998 65 889999999999999999985 8899999999999999999
Q ss_pred EecCCCccccccc-ccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCC-----------------
Q 039475 155 IFDKDYLAYMANG-FERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGN----------------- 216 (286)
Q Consensus 155 ~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~----------------- 216 (286)
++..+.....+++ +..|.+||+|.++..... .....+.++.+|.+|+ .+++...+.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~-----~~~~~l~el~~Le~L~-~ls~~~~s~~~~e~l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALS-----NDKLLLKELENLEHLE-NLSITISSVLLLEDLLGMTRLRSLLQ 697 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccc-----cchhhHHhhhcccchh-hheeecchhHhHhhhhhhHHHHHHhH
Confidence 9987654433344 556999999987765422 1355666667777766 565543221
Q ss_pred -----cccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 217 -----LQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 217 -----~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
..........+..+.+|++|.+......
T Consensus 698 ~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 698 SLSIEGCSKRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred hhhhcccccceeecccccccCcceEEEEcCCCc
Confidence 0013344567788999999999877664
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.63 E-value=7.9e-16 Score=156.09 Aligned_cols=192 Identities=18% Similarity=0.240 Sum_probs=105.4
Q ss_pred CCceEEEeecCCC-CCCchhhhcCCCCcEEEeccCCCCCCCcCccch-hhhcCCCCCcEEEeecccCC------------
Q 039475 37 EKLRHLTLMLGLP-TKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQ-GLFDQLTCLRALKIEELWYG------------ 102 (286)
Q Consensus 37 ~~~r~ls~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~------------ 102 (286)
.+++.+.+..+.+ ..++..+..+++|++|++++|..... +| ..+..+++||+|+|+++...
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~-----ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~ 143 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGP-----IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLE 143 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCc-----CChHHhccCCCCCEEECcCCccccccCccccCCCC
Confidence 4577777776654 34566677788888888877765432 33 33445555666655551000
Q ss_pred ------ccCc-ccCccccCCCCCcEEeccc---ccccCCC-CCCCC-----------CcccccccccccCCCEEEecCCC
Q 039475 103 ------DQTI-EIPKGLENLIHLRYLKLSA---VEELSET-CYCPS-----------LKRLPQGRGKLINLRHLIFDKDY 160 (286)
Q Consensus 103 ------~~i~-~lP~~i~~L~~Lr~L~L~~---~~~LP~~-~~~~~-----------l~~LP~~i~~L~~L~~L~l~~~~ 160 (286)
|.+. .+|..++++.+|++|++++ ...+|.. +.+.+ ...+|..++++++|++|++++|.
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence 3332 4566677777777777765 2345544 32221 12346666666666666666666
Q ss_pred cc-cccccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEE
Q 039475 161 LA-YMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLD 239 (286)
Q Consensus 161 ~~-~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~ 239 (286)
+. .+|..++++++|++|++..+... +.....++++++|+ .|.+.+..- .+..+..+..+++|++|+++
T Consensus 224 l~~~~p~~l~~l~~L~~L~L~~n~l~-------~~~p~~l~~l~~L~-~L~L~~n~l---~~~~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 224 LSGEIPYEIGGLTSLNHLDLVYNNLT-------GPIPSSLGNLKNLQ-YLFLYQNKL---SGPIPPSIFSLQKLISLDLS 292 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCceec-------cccChhHhCCCCCC-EEECcCCee---eccCchhHhhccCcCEEECc
Confidence 55 45666666666666666555432 23333455555555 555542211 22334445555566666665
Q ss_pred eCCCC
Q 039475 240 FDKGE 244 (286)
Q Consensus 240 ~~~~~ 244 (286)
+|...
T Consensus 293 ~n~l~ 297 (968)
T PLN00113 293 DNSLS 297 (968)
T ss_pred CCeec
Confidence 55443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.61 E-value=1.8e-15 Score=153.58 Aligned_cols=187 Identities=21% Similarity=0.229 Sum_probs=114.0
Q ss_pred cCCceEEEeecCCCC-CCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCc-ccCcccc
Q 039475 36 QEKLRHLTLMLGLPT-KFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTI-EIPKGLE 113 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~-~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~-~lP~~i~ 113 (286)
..+.|++.+..+... .+|. ..+++|++|++++|..... +|..++++++|++|++++ |.+. .+|..++
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~-----~p~~~~~l~~L~~L~L~~----n~l~~~~p~~~~ 185 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGE-----IPNDIGSFSSLKVLDLGG----NVLVGKIPNSLT 185 (968)
T ss_pred CCCCCEEECcCCccccccCc--cccCCCCEEECcCCccccc-----CChHHhcCCCCCEEECcc----CcccccCChhhh
Confidence 356777777766652 2332 3467777777777765432 566667777777777777 6643 5677777
Q ss_pred CCCCCcEEeccc---ccccCCC-CCCCC----------C-cccccccccccCCCEEEecCCCcc-ccccccccccccccc
Q 039475 114 NLIHLRYLKLSA---VEELSET-CYCPS----------L-KRLPQGRGKLINLRHLIFDKDYLA-YMANGFERLTSLRTL 177 (286)
Q Consensus 114 ~L~~Lr~L~L~~---~~~LP~~-~~~~~----------l-~~LP~~i~~L~~L~~L~l~~~~~~-~lP~~i~~L~~L~~L 177 (286)
++++|++|++++ ...+|.. +.+.+ + ..+|..++++++|++|++.+|.+. .+|..++++++|++|
T Consensus 186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 265 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265 (968)
T ss_pred hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEE
Confidence 777777777766 3355655 42222 2 256777888888888888887776 567778888888888
Q ss_pred ccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 178 SGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
.+..+... +.....+.++++|+ .|.+.+.. -....+..+.++++|+.|+++.|...
T Consensus 266 ~L~~n~l~-------~~~p~~l~~l~~L~-~L~Ls~n~---l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 266 FLYQNKLS-------GPIPPSIFSLQKLI-SLDLSDNS---LSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred ECcCCeee-------ccCchhHhhccCcC-EEECcCCe---eccCCChhHcCCCCCcEEECCCCccC
Confidence 77666543 23334455555555 55554321 12233444555555666665555443
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.60 E-value=3.3e-17 Score=150.93 Aligned_cols=179 Identities=23% Similarity=0.241 Sum_probs=126.8
Q ss_pred CCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCC
Q 039475 37 EKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLI 116 (286)
Q Consensus 37 ~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~ 116 (286)
.+..|+++..|....+...+..++.||++++..|...... +|..+-.+..|.+|||+. |++.++|..+..-+
T Consensus 55 qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsG----iP~diF~l~dLt~lDLSh----NqL~EvP~~LE~AK 126 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSG----IPTDIFRLKDLTILDLSH----NQLREVPTNLEYAK 126 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCC----CCchhcccccceeeecch----hhhhhcchhhhhhc
Confidence 4567777777777667777888899999999888764333 565566899999999999 99999999999999
Q ss_pred CCcEEecccccccCCCCCCCCCccccccc-ccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCC
Q 039475 117 HLRYLKLSAVEELSETCYCPSLKRLPQGR-GKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACN 195 (286)
Q Consensus 117 ~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i-~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~ 195 (286)
++-.|+|++ +++..+|..+ -+|+.|-.||++.|.+..+|+.+..|.+||+|.++.+... ...
T Consensus 127 n~iVLNLS~----------N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~-------hfQ 189 (1255)
T KOG0444|consen 127 NSIVLNLSY----------NNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN-------HFQ 189 (1255)
T ss_pred CcEEEEccc----------CccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhh-------HHH
Confidence 999999997 6677777554 6777777777777777777777777777777777666443 334
Q ss_pred cccccCcccccceeEEcccCCccc-chhhhhhcCCCCCCceEEEEeCCCC
Q 039475 196 LEGLRNLNHLRQFLRICGLGNLQM-RLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 196 ~~~l~~L~~L~~~L~i~~l~~~~~-~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
+..+..|+.|. .|++. +... ...+|.++..+.+|..+++++|...
T Consensus 190 LrQLPsmtsL~-vLhms---~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp 235 (1255)
T KOG0444|consen 190 LRQLPSMTSLS-VLHMS---NTQRTLDNIPTSLDDLHNLRDVDLSENNLP 235 (1255)
T ss_pred HhcCccchhhh-hhhcc---cccchhhcCCCchhhhhhhhhccccccCCC
Confidence 44444444443 34333 3333 4455556666666666666666554
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.55 E-value=3.4e-14 Score=145.92 Aligned_cols=176 Identities=19% Similarity=0.241 Sum_probs=110.2
Q ss_pred CchHHHHHHHHhcccce-------EEEecCCCCCCccccccccCCceEEEeecCCCCC---CchhhhcCCCCcEEEeccC
Q 039475 1 MHDIVHLFAQYLTRREF-------AAIEVDGDENPLSLTNSCQEKLRHLTLMLGLPTK---FPVSIFDAKKLRSLSLFYD 70 (286)
Q Consensus 1 mHDlv~dla~~~a~~e~-------~~~~~~~~~~~~~~~~~~~~~~r~ls~~~~~~~~---~~~~~~~l~~Lr~L~l~~~ 70 (286)
|||++||+|+++++++. +.+...+..... ....-..+++.+++....... .+..|..+++|+.|.+..+
T Consensus 490 MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl-~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~ 568 (1153)
T PLN03210 490 MHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVL-EDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTK 568 (1153)
T ss_pred hhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHH-HhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecc
Confidence 99999999999998764 221110000000 000012345666554433321 1334556666666666443
Q ss_pred CCCC----CCc---------------------CccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEeccc
Q 039475 71 SKGQ----SAA---------------------SPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSA 125 (286)
Q Consensus 71 ~~~~----~~~---------------------~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~ 125 (286)
.... ... -..+|..| .+.+|++|++.+ +.+..+|..++.+.+|++|+|++
T Consensus 569 ~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~----s~l~~L~~~~~~l~~Lk~L~Ls~ 643 (1153)
T PLN03210 569 KWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQG----SKLEKLWDGVHSLTGLRNIDLRG 643 (1153)
T ss_pred cccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcC----ccccccccccccCCCCCEEECCC
Confidence 2100 000 00134333 456777788877 77888888888899999999986
Q ss_pred ---ccccCCC-C----------CCCCCcccccccccccCCCEEEecCC-Cccccccccccccccccccccccc
Q 039475 126 ---VEELSET-C----------YCPSLKRLPQGRGKLINLRHLIFDKD-YLAYMANGFERLTSLRTLSGFTVA 183 (286)
Q Consensus 126 ---~~~LP~~-~----------~~~~l~~LP~~i~~L~~L~~L~l~~~-~~~~lP~~i~~L~~L~~L~~~~~~ 183 (286)
++.+|.. . +|..+.++|.++++|++|++|++.++ .+..+|.++ ++++|++|.+.++.
T Consensus 644 ~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 644 SKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS 715 (1153)
T ss_pred CCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence 6677754 2 67888899999999999999999874 566888766 78888888776653
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=9.1e-16 Score=120.95 Aligned_cols=137 Identities=26% Similarity=0.287 Sum_probs=114.2
Q ss_pred CCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCC
Q 039475 37 EKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLI 116 (286)
Q Consensus 37 ~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~ 116 (286)
..+.++.+..+....+|+.+..+.+|++|.+++|.... +|..++.++.||.|+++- +.+..+|..+|.++
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~------lp~~issl~klr~lnvgm----nrl~~lprgfgs~p 102 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE------LPTSISSLPKLRILNVGM----NRLNILPRGFGSFP 102 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh------cChhhhhchhhhheecch----hhhhcCccccCCCc
Confidence 55788889999998899999999999999999998654 788889999999999999 99999999999999
Q ss_pred CCcEEeccc----ccccCCC-C----------CCCCCcccccccccccCCCEEEecCCCccccccccccccccccccccc
Q 039475 117 HLRYLKLSA----VEELSET-C----------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFT 181 (286)
Q Consensus 117 ~Lr~L~L~~----~~~LP~~-~----------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~ 181 (286)
-|+.|||.+ -..||.. + +-+.++-+|.++++|++||.|.+++|.+.++|.++|.|+.|++|++.+
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccc
Confidence 999999998 4467766 5 334566777788888888888887777777887788888888777665
Q ss_pred cc
Q 039475 182 VA 183 (286)
Q Consensus 182 ~~ 183 (286)
+.
T Consensus 183 nr 184 (264)
T KOG0617|consen 183 NR 184 (264)
T ss_pred ce
Confidence 53
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.45 E-value=4.4e-15 Score=137.11 Aligned_cols=135 Identities=25% Similarity=0.296 Sum_probs=94.3
Q ss_pred CceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCC
Q 039475 38 KLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIH 117 (286)
Q Consensus 38 ~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~ 117 (286)
...-+.++.|...+.|..+...+++-+|.+++|..... ....|-+++.|-+|||++ |.+..+|+.+-.|.+
T Consensus 104 dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetI-----Pn~lfinLtDLLfLDLS~----NrLe~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 104 DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETI-----PNSLFINLTDLLFLDLSN----NRLEMLPPQIRRLSM 174 (1255)
T ss_pred cceeeecchhhhhhcchhhhhhcCcEEEEcccCccccC-----CchHHHhhHhHhhhcccc----chhhhcCHHHHHHhh
Confidence 34556677777788899998999999999999886542 445688999999999999 999999999999999
Q ss_pred CcEEeccc-------ccccCCC-C--------CCCCCcccccccccccCCCEEEecCCCccccccccccccccccccccc
Q 039475 118 LRYLKLSA-------VEELSET-C--------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFT 181 (286)
Q Consensus 118 Lr~L~L~~-------~~~LP~~-~--------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~ 181 (286)
|++|.|++ +.+||.. . ....+..+|.++..|.+|+.+|++.|++..+|..+.++.+|+.|.++.
T Consensus 175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSG 254 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCc
Confidence 99999998 6788875 3 111223345555555555555555544444444444444444444443
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.36 E-value=1.8e-14 Score=113.67 Aligned_cols=156 Identities=21% Similarity=0.264 Sum_probs=100.7
Q ss_pred hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCC
Q 039475 56 IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYC 135 (286)
Q Consensus 56 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~ 135 (286)
+.++++...|.++.|.... .|..+..+.+|.+|++.+ ++++++|.+|+.|..||.|++.-
T Consensus 29 Lf~~s~ITrLtLSHNKl~~------vppnia~l~nlevln~~n----nqie~lp~~issl~klr~lnvgm---------- 88 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTV------VPPNIAELKNLEVLNLSN----NQIEELPTSISSLPKLRILNVGM---------- 88 (264)
T ss_pred ccchhhhhhhhcccCceee------cCCcHHHhhhhhhhhccc----chhhhcChhhhhchhhhheecch----------
Confidence 3467788888898887654 666789999999999999 99999999999999999999974
Q ss_pred CCCcccccccccccCCCEEEecCCCcc--cccccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcc
Q 039475 136 PSLKRLPQGRGKLINLRHLIFDKDYLA--YMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICG 213 (286)
Q Consensus 136 ~~l~~LP~~i~~L~~L~~L~l~~~~~~--~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~ 213 (286)
+++..+|.+||.++.|+.||+.+|++. .+|..|--|+.|+.|++.+++. .....++++|++|+ -|.+.+
T Consensus 89 nrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf--------e~lp~dvg~lt~lq-il~lrd 159 (264)
T KOG0617|consen 89 NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF--------EILPPDVGKLTNLQ-ILSLRD 159 (264)
T ss_pred hhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc--------ccCChhhhhhccee-EEeecc
Confidence 556666666666666666666655444 3454455555555555444432 22334455555444 344432
Q ss_pred cCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 214 LGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 214 l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
.+ .-.++..++.++.|+.|++..|+.+
T Consensus 160 nd----ll~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 160 ND----LLSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred Cc----hhhCcHHHHHHHHHHHHhcccceee
Confidence 11 2233444555555566665555543
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.34 E-value=1.1e-13 Score=121.91 Aligned_cols=198 Identities=21% Similarity=0.201 Sum_probs=127.8
Q ss_pred CceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCc----------------Cccchh-hhcCCCCCcEEEeeccc
Q 039475 38 KLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAA----------------SPVLQG-LFDQLTCLRALKIEELW 100 (286)
Q Consensus 38 ~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~----------------~~~~~~-~~~~l~~Lr~L~L~~~~ 100 (286)
...|+....+..+.+|+.++.+.+|.-|++..|....... .+.+|. ..+++.++.+|||+.
T Consensus 184 ~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-- 261 (565)
T KOG0472|consen 184 RLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-- 261 (565)
T ss_pred HHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc--
Confidence 3455555555555566666666665555555543211000 011332 344788888888888
Q ss_pred CCccCcccCccccCCCCCcEEeccc--ccccCCC-C--------------------------------------------
Q 039475 101 YGDQTIEIPKGLENLIHLRYLKLSA--VEELSET-C-------------------------------------------- 133 (286)
Q Consensus 101 ~~~~i~~lP~~i~~L~~Lr~L~L~~--~~~LP~~-~-------------------------------------------- 133 (286)
+.++++|++++.|++|.+||+++ ++.+|-+ +
T Consensus 262 --Nklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~ 339 (565)
T KOG0472|consen 262 --NKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQ 339 (565)
T ss_pred --cccccCchHHHHhhhhhhhcccCCccccCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCC
Confidence 88888888888888888888888 8888877 6
Q ss_pred --------------------------------------------------------------------------------
Q 039475 134 -------------------------------------------------------------------------------- 133 (286)
Q Consensus 134 -------------------------------------------------------------------------------- 133 (286)
T Consensus 340 se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~l 419 (565)
T KOG0472|consen 340 SEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVL 419 (565)
T ss_pred CcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHh
Confidence
Q ss_pred CCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCc----------------cCCCCCCcc
Q 039475 134 YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGK----------------YSSEACNLE 197 (286)
Q Consensus 134 ~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~----------------~~~~~~~~~ 197 (286)
..+.+.-.|..++.+++|..|++++|.+-.+|.+++.+..||+|++..+....-. .........
T Consensus 420 snn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~ 499 (565)
T KOG0472|consen 420 SNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPS 499 (565)
T ss_pred hcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChH
Confidence 1111222355677888889999988888889988998888998877654211000 000011222
Q ss_pred cccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 198 GLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 198 ~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
.+++|.+|. .|.+.+. +...+|..+++|++|++|.++.|...
T Consensus 500 ~l~nm~nL~-tLDL~nN----dlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 500 GLKNMRNLT-TLDLQNN----DLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred Hhhhhhhcc-eeccCCC----chhhCChhhccccceeEEEecCCccC
Confidence 355666555 5555421 25778899999999999999999886
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.31 E-value=4.8e-14 Score=124.21 Aligned_cols=178 Identities=20% Similarity=0.212 Sum_probs=103.1
Q ss_pred EeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEe
Q 039475 43 TLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLK 122 (286)
Q Consensus 43 s~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~ 122 (286)
.++.+.....|++++.+..+..+.++.+.... +|..+..+..|+.|+.+. +.+.++|++|+.+..|..|+
T Consensus 74 ~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~------lp~~i~s~~~l~~l~~s~----n~~~el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 74 NVHDNKLSQLPAAIGELEALKSLNVSHNKLSE------LPEQIGSLISLVKLDCSS----NELKELPDSIGRLLDLEDLD 143 (565)
T ss_pred EeccchhhhCCHHHHHHHHHHHhhcccchHhh------ccHHHhhhhhhhhhhccc----cceeecCchHHHHhhhhhhh
Confidence 34444444455555555555555555554332 455555555566666665 55666666666666666555
Q ss_pred ccc--ccccCCC-C----------CCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCcc
Q 039475 123 LSA--VEELSET-C----------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKY 189 (286)
Q Consensus 123 L~~--~~~LP~~-~----------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~ 189 (286)
..+ +..+|++ + ..++++++|+..-+|+.|++|+...|-+..+|+++|.|.+|..|++..+...
T Consensus 144 ~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~---- 219 (565)
T KOG0472|consen 144 ATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR---- 219 (565)
T ss_pred ccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc----
Confidence 555 5666665 4 2244566777766688888888888877788888888888887777666433
Q ss_pred CCCCCCcccccCcccccceeEEcccCCcccchhhhhhc-CCCCCCceEEEEeCCCC
Q 039475 190 SSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHL-EKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 190 ~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~~ 244 (286)
.+.+++....|+ .+++... ..+.+++.. .++.++..|+++.|+..
T Consensus 220 -----~lPef~gcs~L~-Elh~g~N----~i~~lpae~~~~L~~l~vLDLRdNklk 265 (565)
T KOG0472|consen 220 -----FLPEFPGCSLLK-ELHVGEN----QIEMLPAEHLKHLNSLLVLDLRDNKLK 265 (565)
T ss_pred -----cCCCCCccHHHH-HHHhccc----HHHhhHHHHhcccccceeeeccccccc
Confidence 333444444444 4444311 023334333 35666666666666554
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.28 E-value=2.4e-11 Score=125.10 Aligned_cols=83 Identities=22% Similarity=0.261 Sum_probs=49.4
Q ss_pred ceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCcc-CcccCccccCCCC
Q 039475 39 LRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQ-TIEIPKGLENLIH 117 (286)
Q Consensus 39 ~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~-i~~lP~~i~~L~~ 117 (286)
.+.|.+..+....++..+..+++|+.|++.++..... +|. +..+++|+.|+|++ |. +..+|.+|++|.+
T Consensus 613 L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~-----ip~-ls~l~~Le~L~L~~----c~~L~~lp~si~~L~~ 682 (1153)
T PLN03210 613 LVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKE-----IPD-LSMATNLETLKLSD----CSSLVELPSSIQYLNK 682 (1153)
T ss_pred CcEEECcCccccccccccccCCCCCEEECCCCCCcCc-----CCc-cccCCcccEEEecC----CCCccccchhhhccCC
Confidence 3344444444444444555566666666665543221 443 56677777777777 54 6677777777777
Q ss_pred CcEEeccc---ccccCC
Q 039475 118 LRYLKLSA---VEELSE 131 (286)
Q Consensus 118 Lr~L~L~~---~~~LP~ 131 (286)
|++|++++ ++.+|.
T Consensus 683 L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 683 LEDLDMSRCENLEILPT 699 (1153)
T ss_pred CCEEeCCCCCCcCccCC
Confidence 77777775 555554
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.16 E-value=5.5e-12 Score=121.15 Aligned_cols=88 Identities=23% Similarity=0.206 Sum_probs=74.8
Q ss_pred ccCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccC
Q 039475 35 CQEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLEN 114 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~ 114 (286)
.+.+..++++..+....+|.++..+.+|..+....|.... +|..+.....|++|.+.. |.+.++|...+.
T Consensus 239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~------lp~ri~~~~~L~~l~~~~----nel~yip~~le~ 308 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVA------LPLRISRITSLVSLSAAY----NELEYIPPFLEG 308 (1081)
T ss_pred ccccceeeecchhhhhcchHHHHhcccceEecccchhHHh------hHHHHhhhhhHHHHHhhh----hhhhhCCCcccc
Confidence 4677888888888888889999999999999999988743 777777888889888888 888999988888
Q ss_pred CCCCcEEeccc--ccccCCC
Q 039475 115 LIHLRYLKLSA--VEELSET 132 (286)
Q Consensus 115 L~~Lr~L~L~~--~~~LP~~ 132 (286)
+++|+.|+|.. +..+|+.
T Consensus 309 ~~sL~tLdL~~N~L~~lp~~ 328 (1081)
T KOG0618|consen 309 LKSLRTLDLQSNNLPSLPDN 328 (1081)
T ss_pred cceeeeeeehhccccccchH
Confidence 99999999987 7777776
No 13
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.05 E-value=8.2e-12 Score=114.49 Aligned_cols=166 Identities=25% Similarity=0.232 Sum_probs=118.0
Q ss_pred eecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEec
Q 039475 44 LMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKL 123 (286)
Q Consensus 44 ~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L 123 (286)
++.+.+..+|..++.+-.|..++++.|.... +|..+.++..|.+|||+. |++..+|..++.|. |+.|-+
T Consensus 82 lsrNR~~elp~~~~~f~~Le~liLy~n~~r~------ip~~i~~L~~lt~l~ls~----NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 82 LSRNRFSELPEEACAFVSLESLILYHNCIRT------IPEAICNLEALTFLDLSS----NQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred ccccccccCchHHHHHHHHHHHHHHhcccee------cchhhhhhhHHHHhhhcc----chhhcCChhhhcCc-ceeEEE
Confidence 4444444555555555666666666555432 555566666666666666 66666666666665 666666
Q ss_pred ccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCCcccccCcc
Q 039475 124 SAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLN 203 (286)
Q Consensus 124 ~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~ 203 (286)
++ ++++.+|..|+-+..|.+|+.+.|.+..+|..++.|++|+.|.+..+... ..+.++..|+
T Consensus 151 sN----------Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~--------~lp~El~~Lp 212 (722)
T KOG0532|consen 151 SN----------NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE--------DLPEELCSLP 212 (722)
T ss_pred ec----------CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh--------hCCHHHhCCc
Confidence 54 78999999999888999999999999999999999999999987766533 4555666665
Q ss_pred cccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 204 HLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 204 ~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
|. +|++.+. ....++..+.+|++|+.|.|.+|..+
T Consensus 213 -Li-~lDfScN----kis~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 213 -LI-RLDFSCN----KISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred -ee-eeecccC----ceeecchhhhhhhhheeeeeccCCCC
Confidence 44 4666532 14567888999999999999999887
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.02 E-value=5.4e-10 Score=99.14 Aligned_cols=185 Identities=19% Similarity=0.141 Sum_probs=93.8
Q ss_pred CceEEEeecCCCC-CCchhhhcCCC---CcEEEeccCCCCCCCcCccchhhhcCC-CCCcEEEeecccCCccCc-----c
Q 039475 38 KLRHLTLMLGLPT-KFPVSIFDAKK---LRSLSLFYDSKGQSAASPVLQGLFDQL-TCLRALKIEELWYGDQTI-----E 107 (286)
Q Consensus 38 ~~r~ls~~~~~~~-~~~~~~~~l~~---Lr~L~l~~~~~~~~~~~~~~~~~~~~l-~~Lr~L~L~~~~~~~~i~-----~ 107 (286)
+++++.+..+... ..+..+..+.+ |+.|+++++...... ...+...+..+ +.|+.|++++ +.+. .
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~-~~~l~~~l~~~~~~L~~L~L~~----n~l~~~~~~~ 156 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRG-LRLLAKGLKDLPPALEKLVLGR----NRLEGASCEA 156 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHH-HHHHHHHHHhCCCCceEEEcCC----CcCCchHHHH
Confidence 4455555544432 12223333333 555555555432110 00022233444 5556666655 4443 2
Q ss_pred cCccccCCCCCcEEecccccccCCCCCCCCCc-----ccccccccccCCCEEEecCCCcc-----ccccccccccccccc
Q 039475 108 IPKGLENLIHLRYLKLSAVEELSETCYCPSLK-----RLPQGRGKLINLRHLIFDKDYLA-----YMANGFERLTSLRTL 177 (286)
Q Consensus 108 lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~-----~LP~~i~~L~~L~~L~l~~~~~~-----~lP~~i~~L~~L~~L 177 (286)
++..+..+.+|++|++++ +.+. .++..+..+++|++|++++|.+. .++..+..+++|++|
T Consensus 157 ~~~~~~~~~~L~~L~l~~----------n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L 226 (319)
T cd00116 157 LAKALRANRDLKELNLAN----------NGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVL 226 (319)
T ss_pred HHHHHHhCCCcCEEECcC----------CCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEE
Confidence 333444555566666653 2233 34445556668888888777664 233345666778877
Q ss_pred ccccccccCCccCCCCCCccccc-----CcccccceeEEcccCCccc-chhhhhhcCCCCCCceEEEEeCCCCC
Q 039475 178 SGFTVARVGGKYSSEACNLEGLR-----NLNHLRQFLRICGLGNLQM-RLKINAHLEKKKNLVHLTLDFDKGED 245 (286)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~l~-----~L~~L~~~L~i~~l~~~~~-~~~~~~~l~~l~~L~~L~L~~~~~~~ 245 (286)
++..+... ...+..+. ..++|+ +|.+.++.-... ...+...+..+++|++++++.|...+
T Consensus 227 ~ls~n~l~-------~~~~~~l~~~~~~~~~~L~-~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 227 NLGDNNLT-------DAGAAALASALLSPNISLL-TLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred ecCCCcCc-------hHHHHHHHHHHhccCCCce-EEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 77665432 11111111 124555 666665422211 34455666677888888888887764
No 15
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.01 E-value=1.3e-10 Score=107.13 Aligned_cols=189 Identities=17% Similarity=0.125 Sum_probs=88.8
Q ss_pred ceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-CccccCCC
Q 039475 39 LRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKGLENLI 116 (286)
Q Consensus 39 ~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i~~L~ 116 (286)
+.+|.+..|.+..+ -..|..+.+|-+|.++.|..... .+..|+++++|+.|+|.. |.|..+ --.|..|.
T Consensus 175 i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL-----p~r~Fk~L~~L~~LdLnr----N~irive~ltFqgL~ 245 (873)
T KOG4194|consen 175 IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL-----PQRSFKRLPKLESLDLNR----NRIRIVEGLTFQGLP 245 (873)
T ss_pred ceEEeeccccccccccccccccchheeeecccCccccc-----CHHHhhhcchhhhhhccc----cceeeehhhhhcCch
Confidence 44555555544222 23344455555555555554432 334555566666666655 554433 22444555
Q ss_pred CCcEEeccc--ccccCCC-C-CCCCCccc----------c-ccccccc------------------------CCCEEEec
Q 039475 117 HLRYLKLSA--VEELSET-C-YCPSLKRL----------P-QGRGKLI------------------------NLRHLIFD 157 (286)
Q Consensus 117 ~Lr~L~L~~--~~~LP~~-~-~~~~l~~L----------P-~~i~~L~------------------------~L~~L~l~ 157 (286)
.|+.|.+.. +..|-++ + +|.+++.| - .++-+|+ +|++|+++
T Consensus 246 Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs 325 (873)
T KOG4194|consen 246 SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLS 325 (873)
T ss_pred hhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecc
Confidence 555555544 4455544 3 33332211 1 1233444 44445555
Q ss_pred CCCccccccc-ccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceE
Q 039475 158 KDYLAYMANG-FERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHL 236 (286)
Q Consensus 158 ~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L 236 (286)
.|.+..++++ |..|..|++|.+..+... .-.-..+..|++|+ .|.+...+-..-.+.....+..|+.|++|
T Consensus 326 ~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-------~l~e~af~~lssL~-~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 326 SNRITRLDEGSFRVLSQLEELNLSHNSID-------HLAEGAFVGLSSLH-KLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred ccccccCChhHHHHHHHhhhhcccccchH-------HHHhhHHHHhhhhh-hhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 5555555443 555555555554443322 00011233334444 44443321111133344567778888888
Q ss_pred EEEeCCCC
Q 039475 237 TLDFDKGE 244 (286)
Q Consensus 237 ~L~~~~~~ 244 (286)
.+..|+..
T Consensus 398 ~l~gNqlk 405 (873)
T KOG4194|consen 398 RLTGNQLK 405 (873)
T ss_pred eecCceee
Confidence 88888775
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.96 E-value=3.5e-10 Score=104.35 Aligned_cols=144 Identities=23% Similarity=0.272 Sum_probs=78.0
Q ss_pred CceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCc-------------------CccchhhhcCCCCCcEEEee
Q 039475 38 KLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAA-------------------SPVLQGLFDQLTCLRALKIE 97 (286)
Q Consensus 38 ~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~-------------------~~~~~~~~~~l~~Lr~L~L~ 97 (286)
.+.+|.+.+|.+..+ .+.+..++.||+|+++.|....... ..+-.+.|.++..|-+|.|+
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence 355566665555322 3444555566666666554322100 00011234444455555555
Q ss_pred cccCCccCcccCc-cccCCCCCcEEeccc--cccc--------CCC-C---CCCCCccccc-ccccccCCCEEEecCCCc
Q 039475 98 ELWYGDQTIEIPK-GLENLIHLRYLKLSA--VEEL--------SET-C---YCPSLKRLPQ-GRGKLINLRHLIFDKDYL 161 (286)
Q Consensus 98 ~~~~~~~i~~lP~-~i~~L~~Lr~L~L~~--~~~L--------P~~-~---~~~~l~~LP~-~i~~L~~L~~L~l~~~~~ 161 (286)
. |.++.+|. .|.+|.+|+.|+|.. +... |.- . .-+++..|-. .|..|.++++|++..|++
T Consensus 206 r----NrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 206 R----NRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred c----CcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence 5 55555554 445566666666654 2211 111 0 2233444443 357788888888888888
Q ss_pred cccccc-cccccccccccccccccc
Q 039475 162 AYMANG-FERLTSLRTLSGFTVARV 185 (286)
Q Consensus 162 ~~lP~~-i~~L~~L~~L~~~~~~~~ 185 (286)
..+-.+ +-.|+.|+.|+++.+...
T Consensus 282 ~~vn~g~lfgLt~L~~L~lS~NaI~ 306 (873)
T KOG4194|consen 282 QAVNEGWLFGLTSLEQLDLSYNAIQ 306 (873)
T ss_pred hhhhcccccccchhhhhccchhhhh
Confidence 877654 778888888888776544
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.96 E-value=1.3e-10 Score=111.89 Aligned_cols=110 Identities=25% Similarity=0.296 Sum_probs=75.2
Q ss_pred ccCCCCCcEEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCcccccccccccccccccccccccccCCccC
Q 039475 112 LENLIHLRYLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYS 190 (286)
Q Consensus 112 i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~ 190 (286)
+-+.+|||.|+|++ +.+.++|++ +.++..|++|+++||+++.+|..+.++..|++|....+...
T Consensus 379 l~~~~hLKVLhLsy----------NrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~----- 443 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSY----------NRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL----- 443 (1081)
T ss_pred hccccceeeeeecc----------cccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-----
Confidence 34556666666664 677788864 58888899999999999999988888899998877655432
Q ss_pred CCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 191 SEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 191 ~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
..+++..+++|+ .+++....- . ...++..+. .++|++|++++|...
T Consensus 444 ----~fPe~~~l~qL~-~lDlS~N~L-~-~~~l~~~~p-~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 444 ----SFPELAQLPQLK-VLDLSCNNL-S-EVTLPEALP-SPNLKYLDLSGNTRL 489 (1081)
T ss_pred ----echhhhhcCcce-EEecccchh-h-hhhhhhhCC-CcccceeeccCCccc
Confidence 334777777777 677653211 0 122222222 278999999998754
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.94 E-value=4.2e-09 Score=103.15 Aligned_cols=118 Identities=14% Similarity=0.204 Sum_probs=78.3
Q ss_pred ccCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccC
Q 039475 35 CQEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLEN 114 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~ 114 (286)
++..++.+.+..|.+..+|..+. ++|++|++.+|.... +|..+. ..|+.|+|++ |.+..+|..+.
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lts------LP~~l~--~~L~~L~Ls~----N~L~~LP~~l~- 261 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTS------IPATLP--DTIQEMELSI----NRITELPERLP- 261 (754)
T ss_pred cccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcccc------CChhhh--ccccEEECcC----CccCcCChhHh-
Confidence 45667888888887777776653 578888888876542 454332 3688888888 88888887765
Q ss_pred CCCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccc
Q 039475 115 LIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTV 182 (286)
Q Consensus 115 L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~ 182 (286)
..|++|++++ +.+..+|..+. .+|++|++++|++..+|..+. .+|+.|++..+
T Consensus 262 -s~L~~L~Ls~----------N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N 314 (754)
T PRK15370 262 -SALQSLDLFH----------NKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN 314 (754)
T ss_pred -CCCCEEECcC----------CccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCC
Confidence 4688888874 56666666554 367777777777766665443 24555554443
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.88 E-value=2.8e-09 Score=94.52 Aligned_cols=184 Identities=21% Similarity=0.234 Sum_probs=112.8
Q ss_pred ceEEEeecCCCC-------CCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCC---CcEEEeecccCCccCc--
Q 039475 39 LRHLTLMLGLPT-------KFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTC---LRALKIEELWYGDQTI-- 106 (286)
Q Consensus 39 ~r~ls~~~~~~~-------~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~---Lr~L~L~~~~~~~~i~-- 106 (286)
.+++.+..+... .++..+..+++|+.|++.++..... .+..+..+.. |++|++++ +.+.
T Consensus 53 l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~~~~~l~~~~~L~~L~ls~----~~~~~~ 123 (319)
T cd00116 53 LKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD-----GCGVLESLLRSSSLQELKLNN----NGLGDR 123 (319)
T ss_pred ceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh-----HHHHHHHHhccCcccEEEeeC----CccchH
Confidence 566666554433 1234566778888888888775432 3444444444 88888888 6654
Q ss_pred ---ccCccccCC-CCCcEEecccccccCCCCCCCCCc-----ccccccccccCCCEEEecCCCcc-----cccccccccc
Q 039475 107 ---EIPKGLENL-IHLRYLKLSAVEELSETCYCPSLK-----RLPQGRGKLINLRHLIFDKDYLA-----YMANGFERLT 172 (286)
Q Consensus 107 ---~lP~~i~~L-~~Lr~L~L~~~~~LP~~~~~~~l~-----~LP~~i~~L~~L~~L~l~~~~~~-----~lP~~i~~L~ 172 (286)
.+...+..+ .+|+.|++++ +.+. .++..+..+.+|++|++.+|.+. .++..+..++
T Consensus 124 ~~~~l~~~l~~~~~~L~~L~L~~----------n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~ 193 (319)
T cd00116 124 GLRLLAKGLKDLPPALEKLVLGR----------NRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANC 193 (319)
T ss_pred HHHHHHHHHHhCCCCceEEEcCC----------CcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCC
Confidence 334456667 8888888885 3344 45666778889999999988776 2444566667
Q ss_pred cccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCccc-chhhhhhc-CCCCCCceEEEEeCCCCC
Q 039475 173 SLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQM-RLKINAHL-EKKKNLVHLTLDFDKGED 245 (286)
Q Consensus 173 ~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~-~~~~~~~l-~~l~~L~~L~L~~~~~~~ 245 (286)
+|++|++..+...... .......+..+++|+ .|.+.+..-... ...+...+ ...+.|++|++++|..++
T Consensus 194 ~L~~L~L~~n~i~~~~---~~~l~~~~~~~~~L~-~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~ 264 (319)
T cd00116 194 NLEVLDLNNNGLTDEG---ASALAETLASLKSLE-VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD 264 (319)
T ss_pred CCCEEeccCCccChHH---HHHHHHHhcccCCCC-EEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCc
Confidence 8999888776543100 001122345566677 787775422111 12222222 135789999999998763
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=1.3e-09 Score=88.25 Aligned_cols=101 Identities=26% Similarity=0.382 Sum_probs=23.1
Q ss_pred cCCCCcEEEeccCCCCCCCcCccchhhhc-CCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCC
Q 039475 58 DAKKLRSLSLFYDSKGQSAASPVLQGLFD-QLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCP 136 (286)
Q Consensus 58 ~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~ 136 (286)
+..++|.|.+.++.... +.. ++ .+.+|++|+|++ |.+..++ .+..|.+|+.|++++ +
T Consensus 17 n~~~~~~L~L~~n~I~~------Ie~-L~~~l~~L~~L~Ls~----N~I~~l~-~l~~L~~L~~L~L~~----------N 74 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST------IEN-LGATLDKLEVLDLSN----NQITKLE-GLPGLPRLKTLDLSN----------N 74 (175)
T ss_dssp -------------------------S---TT-TT--EEE-TT----S--S--T-T----TT--EEE--S----------S
T ss_pred ccccccccccccccccc------ccc-hhhhhcCCCEEECCC----CCCcccc-CccChhhhhhcccCC----------C
Confidence 34445555555555332 111 22 345555666665 5555554 455555555555553 5
Q ss_pred CCccccccc-ccccCCCEEEecCCCccccc--ccccccccccccccc
Q 039475 137 SLKRLPQGR-GKLINLRHLIFDKDYLAYMA--NGFERLTSLRTLSGF 180 (286)
Q Consensus 137 ~l~~LP~~i-~~L~~L~~L~l~~~~~~~lP--~~i~~L~~L~~L~~~ 180 (286)
.++.++..+ ..+++|++|++++|++..+- ..+..+++|+.|++.
T Consensus 75 ~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~ 121 (175)
T PF14580_consen 75 RISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLE 121 (175)
T ss_dssp ---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-T
T ss_pred CCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeecc
Confidence 555554444 24555555555555554332 123344444444443
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.83 E-value=4.4e-09 Score=104.60 Aligned_cols=105 Identities=29% Similarity=0.305 Sum_probs=85.9
Q ss_pred CceEEEeecCC--CCCCchh-hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccC
Q 039475 38 KLRHLTLMLGL--PTKFPVS-IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLEN 114 (286)
Q Consensus 38 ~~r~ls~~~~~--~~~~~~~-~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~ 114 (286)
+.+-+-+..+. ...++.. |..++.||+|++++|..... +|..++++-+||||++++ +.+..+|.++++
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~-----LP~~I~~Li~LryL~L~~----t~I~~LP~~l~~ 616 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK-----LPSSIGELVHLRYLDLSD----TGISHLPSGLGN 616 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc-----CChHHhhhhhhhcccccC----CCccccchHHHH
Confidence 57888888775 3444443 67899999999999765443 999999999999999999 999999999999
Q ss_pred CCCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCC
Q 039475 115 LIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDY 160 (286)
Q Consensus 115 L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~ 160 (286)
|+.|.||++.. ...+..+|..+..|++||+|.+....
T Consensus 617 Lk~L~~Lnl~~---------~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 617 LKKLIYLNLEV---------TGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred HHhhheecccc---------ccccccccchhhhcccccEEEeeccc
Confidence 99999999985 44455566667779999999987643
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.76 E-value=2e-08 Score=98.43 Aligned_cols=127 Identities=19% Similarity=0.259 Sum_probs=79.6
Q ss_pred cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475 36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL 115 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L 115 (286)
..+++.|.+..+.+..+|..+. .+|+.|++++|.... +|..+. ..|++|++++ |.+..+|..+.
T Consensus 219 ~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~------LP~~l~--s~L~~L~Ls~----N~L~~LP~~l~-- 282 (754)
T PRK15370 219 QGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITE------LPERLP--SALQSLDLFH----NKISCLPENLP-- 282 (754)
T ss_pred ccCCCEEECCCCccccCChhhh--ccccEEECcCCccCc------CChhHh--CCCCEEECcC----CccCccccccC--
Confidence 3568888888888777776553 478888888887542 555443 4688888888 88888887665
Q ss_pred CCCcEEeccc--ccccCCC-C--------CCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccc
Q 039475 116 IHLRYLKLSA--VEELSET-C--------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTV 182 (286)
Q Consensus 116 ~~Lr~L~L~~--~~~LP~~-~--------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~ 182 (286)
.+|++|++++ ++.+|.. . ..+.+..+|..+. ++|+.|++.+|.+..+|..+. ++|+.|++..+
T Consensus 283 ~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N 356 (754)
T PRK15370 283 EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKN 356 (754)
T ss_pred CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCcccc--ccceeccccCCccccCChhhc--CcccEEECCCC
Confidence 4788888887 6666653 2 2334555554332 345555555555555554432 34444444433
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.70 E-value=2.2e-09 Score=94.92 Aligned_cols=192 Identities=18% Similarity=0.193 Sum_probs=131.4
Q ss_pred cccCCceEEEeecCCCCCCc-hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-c
Q 039475 34 SCQEKLRHLTLMLGLPTKFP-VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-G 111 (286)
Q Consensus 34 ~~~~~~r~ls~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~ 111 (286)
+.|...-.+.+..|.+..+| .+|..+++||.|+++.|..+.. -|++|.++..|-.|-+.++ +.|+++|. .
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-----~p~AF~GL~~l~~Lvlyg~---NkI~~l~k~~ 135 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI-----APDAFKGLASLLSLVLYGN---NKITDLPKGA 135 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhc-----ChHhhhhhHhhhHHHhhcC---CchhhhhhhH
Confidence 45677788888889887775 5678999999999999987643 7889999998877766661 55888875 4
Q ss_pred ccCCCCCcEE------------------------eccc--ccccCCC-C-------------------------------
Q 039475 112 LENLIHLRYL------------------------KLSA--VEELSET-C------------------------------- 133 (286)
Q Consensus 112 i~~L~~Lr~L------------------------~L~~--~~~LP~~-~------------------------------- 133 (286)
|+.|..|+.| .+.+ +..++.. +
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~ 215 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAM 215 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhh
Confidence 4555444444 4333 3444442 2
Q ss_pred -----------------------------CCC-------------CCcccc-cccccccCCCEEEecCCCcccccc-ccc
Q 039475 134 -----------------------------YCP-------------SLKRLP-QGRGKLINLRHLIFDKDYLAYMAN-GFE 169 (286)
Q Consensus 134 -----------------------------~~~-------------~l~~LP-~~i~~L~~L~~L~l~~~~~~~lP~-~i~ 169 (286)
.|. -....| ..|.+|++|+.|++++|.++.+-+ +|.
T Consensus 216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe 295 (498)
T KOG4237|consen 216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE 295 (498)
T ss_pred chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence 111 111223 247899999999999999998855 499
Q ss_pred ccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 170 RLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 170 ~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
.+..++.|.+..+... ...-..+..|..|+ .|++.+. +-.-..+..+..+..|..|+|-.|...
T Consensus 296 ~~a~l~eL~L~~N~l~-------~v~~~~f~~ls~L~-tL~L~~N---~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 296 GAAELQELYLTRNKLE-------FVSSGMFQGLSGLK-TLSLYDN---QITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred chhhhhhhhcCcchHH-------HHHHHhhhccccce-eeeecCC---eeEEEecccccccceeeeeehccCccc
Confidence 9999999988776544 22333456666666 6777643 113445677888888888888777643
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.67 E-value=2.6e-08 Score=80.70 Aligned_cols=127 Identities=27% Similarity=0.307 Sum_probs=56.5
Q ss_pred cCCceEEEeecCCCCCCchhhh-cCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccc-c
Q 039475 36 QEKLRHLTLMLGLPTKFPVSIF-DAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGL-E 113 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i-~ 113 (286)
+.+.|.|++.++.+..+ +.+. .+.+|++|++++|.... +. .+..++.|++|++++ |.+..+++.+ .
T Consensus 18 ~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~------l~-~l~~L~~L~~L~L~~----N~I~~i~~~l~~ 85 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITK------LE-GLPGLPRLKTLDLSN----NRISSISEGLDK 85 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--------T-T----TT--EEE--S----S---S-CHHHHH
T ss_pred ccccccccccccccccc-cchhhhhcCCCEEECCCCCCcc------cc-CccChhhhhhcccCC----CCCCccccchHH
Confidence 45679999999888654 3454 58899999999998654 33 367899999999999 9999998766 4
Q ss_pred CCCCCcEEecccccccCCCCCCCCCcccc--cccccccCCCEEEecCCCcccccc----cccccccccccccccccc
Q 039475 114 NLIHLRYLKLSAVEELSETCYCPSLKRLP--QGRGKLINLRHLIFDKDYLAYMAN----GFERLTSLRTLSGFTVAR 184 (286)
Q Consensus 114 ~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP--~~i~~L~~L~~L~l~~~~~~~lP~----~i~~L~~L~~L~~~~~~~ 184 (286)
.+++|+.|++++ +.+..+- ..+..+++|++|++.+|.+...+. -|..+++|+.|+...+..
T Consensus 86 ~lp~L~~L~L~~----------N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 86 NLPNLQELYLSN----------NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp H-TT--EEE-TT----------S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred hCCcCCEEECcC----------CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccH
Confidence 699999999986 5555443 346788999999999998876653 278899999998776653
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.66 E-value=1.4e-07 Score=92.50 Aligned_cols=112 Identities=22% Similarity=0.188 Sum_probs=60.7
Q ss_pred cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhc-----------------CCCCCcEEEeec
Q 039475 36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFD-----------------QLTCLRALKIEE 98 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~-----------------~l~~Lr~L~L~~ 98 (286)
+..++.|.+..|.+..+|.. .++|++|++.+|.... +|..+. .+..|+.|++++
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lts------LP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~ 291 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTS------LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFG 291 (788)
T ss_pred hcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCc------ccCcccccceeeccCCchhhhhhchhhcCEEECcC
Confidence 44678888888777666642 5678888888776542 221111 112344455555
Q ss_pred ccCCccCcccCccccCCCCCcEEeccc--ccccCCC-C-------CCCCCcccccccccccCCCEEEecCCCcccccc
Q 039475 99 LWYGDQTIEIPKGLENLIHLRYLKLSA--VEELSET-C-------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMAN 166 (286)
Q Consensus 99 ~~~~~~i~~lP~~i~~L~~Lr~L~L~~--~~~LP~~-~-------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~ 166 (286)
|.+..+|.. +.+|++|++++ +..+|.. . ..+.+..+|.. ..+|++|++++|++..+|.
T Consensus 292 ----N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 292 ----NQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPT 359 (788)
T ss_pred ----Ccccccccc---ccccceeECCCCccccCCCCcccccccccccCcccccccc---ccccceEecCCCccCCCCC
Confidence 555555532 35677777766 5555442 2 12234444431 1356666666666666554
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.63 E-value=2.6e-08 Score=91.42 Aligned_cols=109 Identities=25% Similarity=0.335 Sum_probs=78.7
Q ss_pred hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCC-CCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCC
Q 039475 54 VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLT-CLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSET 132 (286)
Q Consensus 54 ~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~ 132 (286)
..+..++.+..|.+.++.... ++.....+. +|++|++++ +.+..+|..++.+++|+.|+++.
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~------i~~~~~~~~~nL~~L~l~~----N~i~~l~~~~~~l~~L~~L~l~~------- 172 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITD------IPPLIGLLKSNLKELDLSD----NKIESLPSPLRNLPNLKNLDLSF------- 172 (394)
T ss_pred hhhhcccceeEEecCCccccc------Cccccccchhhcccccccc----cchhhhhhhhhccccccccccCC-------
Confidence 334455677777777776543 555555553 788888888 88888877788888888888875
Q ss_pred CCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccc
Q 039475 133 CYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTV 182 (286)
Q Consensus 133 ~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~ 182 (286)
+.+.++|...+++.+|+.|++++|.+..+|..++.+..|++|.+..+
T Consensus 173 ---N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 173 ---NDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred ---chhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCC
Confidence 66777777777777888888888878788777766667777766555
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.63 E-value=5.9e-09 Score=96.06 Aligned_cols=130 Identities=22% Similarity=0.288 Sum_probs=91.3
Q ss_pred EeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEe
Q 039475 43 TLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLK 122 (286)
Q Consensus 43 s~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~ 122 (286)
.+..+.+..+|..++++..|..|+++.|.... +|..+..+ -|++|-+++ |.++.+|+.||.+.+|..||
T Consensus 104 iLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~------lp~~lC~l-pLkvli~sN----Nkl~~lp~~ig~~~tl~~ld 172 (722)
T KOG0532|consen 104 ILYHNCIRTIPEAICNLEALTFLDLSSNQLSH------LPDGLCDL-PLKVLIVSN----NKLTSLPEEIGLLPTLAHLD 172 (722)
T ss_pred HHHhccceecchhhhhhhHHHHhhhccchhhc------CChhhhcC-cceeEEEec----CccccCCcccccchhHHHhh
Confidence 34455566678888888888888888777543 55544444 368888888 88888888888777888888
Q ss_pred ccc--ccccCCC-CCC----------CCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccc
Q 039475 123 LSA--VEELSET-CYC----------PSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVAR 184 (286)
Q Consensus 123 L~~--~~~LP~~-~~~----------~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~ 184 (286)
.+. +..+|.. ++. +.+..+|.+++.| .|..||++.|++..+|..|.+|+.||+|.+-.+..
T Consensus 173 ~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 173 VSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred hhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCC
Confidence 776 6667766 522 3445667777755 57777787787778887788888888776655543
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.53 E-value=8.5e-08 Score=87.98 Aligned_cols=173 Identities=24% Similarity=0.218 Sum_probs=126.5
Q ss_pred CceEEEeecCCCCCCchhhhcCC-CCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCC
Q 039475 38 KLRHLTLMLGLPTKFPVSIFDAK-KLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLI 116 (286)
Q Consensus 38 ~~r~ls~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~ 116 (286)
....+.+..+.+..+++....++ +|+.|++.++.... +|..+..++.|+.|++++ +.+..+|...+.+.
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~------l~~~~~~l~~L~~L~l~~----N~l~~l~~~~~~~~ 186 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES------LPSPLRNLPNLKNLDLSF----NDLSDLPKLLSNLS 186 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccchhh------hhhhhhccccccccccCC----chhhhhhhhhhhhh
Confidence 47778888888888888888785 99999999998654 555678999999999999 99999999988999
Q ss_pred CCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCCc
Q 039475 117 HLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNL 196 (286)
Q Consensus 117 ~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~ 196 (286)
.|+.|++++ +.+..+|..+..+..|+.|.+.+|.+...+..+.+++++..|.+..+... ..+
T Consensus 187 ~L~~L~ls~----------N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~--------~~~ 248 (394)
T COG4886 187 NLNNLDLSG----------NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE--------DLP 248 (394)
T ss_pred hhhheeccC----------CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee--------ecc
Confidence 999999997 77788887777777788888887766667777777777777764433321 113
Q ss_pred ccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 197 EGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 197 ~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
..++.+..++ .|.+.+... ..+ ..+..+.+++.|+++.+...
T Consensus 249 ~~~~~l~~l~-~L~~s~n~i----~~i-~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 249 ESIGNLSNLE-TLDLSNNQI----SSI-SSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred chhccccccc-eeccccccc----ccc-ccccccCccCEEeccCcccc
Confidence 4445555455 555543211 111 12777778888888776554
No 29
>PLN03150 hypothetical protein; Provisional
Probab=98.52 E-value=1.9e-07 Score=90.63 Aligned_cols=102 Identities=19% Similarity=0.253 Sum_probs=77.2
Q ss_pred CCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCc-ccCccccCCCCCcEEecccccccCCCCCCCCCc
Q 039475 61 KLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTI-EIPKGLENLIHLRYLKLSAVEELSETCYCPSLK 139 (286)
Q Consensus 61 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~-~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~ 139 (286)
.++.|.+.++...+. +|..+..+++|+.|+|++ |.+. .+|..++.+.+|++|+|++ +.+.
T Consensus 419 ~v~~L~L~~n~L~g~-----ip~~i~~L~~L~~L~Ls~----N~l~g~iP~~~~~l~~L~~LdLs~----------N~ls 479 (623)
T PLN03150 419 FIDGLGLDNQGLRGF-----IPNDISKLRHLQSINLSG----NSIRGNIPPSLGSITSLEVLDLSY----------NSFN 479 (623)
T ss_pred EEEEEECCCCCcccc-----CCHHHhCCCCCCEEECCC----CcccCcCChHHhCCCCCCEEECCC----------CCCC
Confidence 366777877766543 777788888999999988 8876 7888888899999999885 4554
Q ss_pred -ccccccccccCCCEEEecCCCcc-ccccccccc-cccccccccc
Q 039475 140 -RLPQGRGKLINLRHLIFDKDYLA-YMANGFERL-TSLRTLSGFT 181 (286)
Q Consensus 140 -~LP~~i~~L~~L~~L~l~~~~~~-~lP~~i~~L-~~L~~L~~~~ 181 (286)
.+|..+++|++|++|++++|.+. .+|..++.+ .++..+.+..
T Consensus 480 g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred CCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecC
Confidence 68888888999999999888877 778777654 3445554443
No 30
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.46 E-value=2.3e-07 Score=90.93 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=13.8
Q ss_pred CCCEEEecCCCccccccccccccccccccccccc
Q 039475 150 NLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVA 183 (286)
Q Consensus 150 ~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~ 183 (286)
+|+.|++++|.+..+|... .+|+.|++..+.
T Consensus 403 ~L~~LdLS~N~LssIP~l~---~~L~~L~Ls~Nq 433 (788)
T PRK15387 403 ELKELMVSGNRLTSLPMLP---SGLLSLSVYRNQ 433 (788)
T ss_pred CCCEEEccCCcCCCCCcch---hhhhhhhhccCc
Confidence 3444455544444444322 234455554443
No 31
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=3.5e-07 Score=60.84 Aligned_cols=57 Identities=32% Similarity=0.463 Sum_probs=33.8
Q ss_pred CCcEEEeecccCCccCcccCc-cccCCCCCcEEecccccccCCCCCCCCCccccc-ccccccCCCEEEecCCC
Q 039475 90 CLRALKIEELWYGDQTIEIPK-GLENLIHLRYLKLSAVEELSETCYCPSLKRLPQ-GRGKLINLRHLIFDKDY 160 (286)
Q Consensus 90 ~Lr~L~L~~~~~~~~i~~lP~-~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~-~i~~L~~L~~L~l~~~~ 160 (286)
+|++|++++ |.+..+|. .+..+.+|++|++++ +.++.+|. .|..+++|++|++++|.
T Consensus 2 ~L~~L~l~~----n~l~~i~~~~f~~l~~L~~L~l~~----------N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSN----NKLTEIPPDSFSNLPNLETLDLSN----------NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETS----STESEECTTTTTTGTTESEEEETS----------SSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCC----CCCCccCHHHHcCCCCCCEeEccC----------CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 456666666 66666653 456666666666653 55555553 45666666666666654
No 32
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.31 E-value=3.1e-07 Score=89.44 Aligned_cols=134 Identities=24% Similarity=0.157 Sum_probs=94.1
Q ss_pred CCCCcEEEeecccCCcc-Cc-ccCcccc-CCCCCcEEecccccccCCCCCCCCC--cccccccccccCCCEEEecCCCcc
Q 039475 88 LTCLRALKIEELWYGDQ-TI-EIPKGLE-NLIHLRYLKLSAVEELSETCYCPSL--KRLPQGRGKLINLRHLIFDKDYLA 162 (286)
Q Consensus 88 l~~Lr~L~L~~~~~~~~-i~-~lP~~i~-~L~~Lr~L~L~~~~~LP~~~~~~~l--~~LP~~i~~L~~L~~L~l~~~~~~ 162 (286)
-.+|+.||++| .. +. .=|..+| .|+.||.|.+.+ ..+ .++-.-..++++|..||++++++.
T Consensus 121 r~nL~~LdI~G----~~~~s~~W~~kig~~LPsL~sL~i~~----------~~~~~~dF~~lc~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 121 RQNLQHLDISG----SELFSNGWPKKIGTMLPSLRSLVISG----------RQFDNDDFSQLCASFPNLRSLDISGTNIS 186 (699)
T ss_pred HHhhhhcCccc----cchhhccHHHHHhhhCcccceEEecC----------ceecchhHHHHhhccCccceeecCCCCcc
Confidence 35789999998 54 22 3344565 468999999875 111 122333467889999999999998
Q ss_pred cccccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCccc---chhhhhhcCCCCCCceEEEE
Q 039475 163 YMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQM---RLKINAHLEKKKNLVHLTLD 239 (286)
Q Consensus 163 ~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~---~~~~~~~l~~l~~L~~L~L~ 239 (286)
.+ .||++|++||+|.+.+.... ....+.++-+|++|+ .|+|+.-..... .....+.-..+++|+.|+.+
T Consensus 187 nl-~GIS~LknLq~L~mrnLe~e------~~~~l~~LF~L~~L~-vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 187 NL-SGISRLKNLQVLSMRNLEFE------SYQDLIDLFNLKKLR-VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred Cc-HHHhccccHHHHhccCCCCC------chhhHHHHhcccCCC-eeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 88 78999999999998877655 356777888899888 788875433322 22223334458899999998
Q ss_pred eCCC
Q 039475 240 FDKG 243 (286)
Q Consensus 240 ~~~~ 243 (286)
....
T Consensus 259 gTdi 262 (699)
T KOG3665|consen 259 GTDI 262 (699)
T ss_pred Ccch
Confidence 4443
No 33
>PLN03150 hypothetical protein; Provisional
Probab=98.30 E-value=2.3e-06 Score=83.07 Aligned_cols=104 Identities=24% Similarity=0.279 Sum_probs=86.5
Q ss_pred ceEEEeecCCC-CCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCc-ccCccccCCC
Q 039475 39 LRHLTLMLGLP-TKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTI-EIPKGLENLI 116 (286)
Q Consensus 39 ~r~ls~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~-~lP~~i~~L~ 116 (286)
++.|.+..+.. ..+|..+..+++|+.|++++|...+. +|..+..++.|++|+|++ |.+. .+|+.+++|.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-----iP~~~~~l~~L~~LdLs~----N~lsg~iP~~l~~L~ 490 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-----IPPSLGSITSLEVLDLSY----NSFNGSIPESLGQLT 490 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-----CChHHhCCCCCCEEECCC----CCCCCCCchHHhcCC
Confidence 66777777766 46788999999999999999987654 888899999999999999 9976 7899999999
Q ss_pred CCcEEecccccccCCCCCCCCCc-ccccccccc-cCCCEEEecCCCc
Q 039475 117 HLRYLKLSAVEELSETCYCPSLK-RLPQGRGKL-INLRHLIFDKDYL 161 (286)
Q Consensus 117 ~Lr~L~L~~~~~LP~~~~~~~l~-~LP~~i~~L-~~L~~L~l~~~~~ 161 (286)
+|++|+|++ +.+. .+|..++.+ .++..+++.+|..
T Consensus 491 ~L~~L~Ls~----------N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 491 SLRILNLNG----------NSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCCEEECcC----------CcccccCChHHhhccccCceEEecCCcc
Confidence 999999985 4454 788888664 4677888887743
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.29 E-value=2.1e-07 Score=82.63 Aligned_cols=121 Identities=20% Similarity=0.289 Sum_probs=87.9
Q ss_pred CCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-CccccCCCCCcEEeccc---
Q 039475 50 TKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKGLENLIHLRYLKLSA--- 125 (286)
Q Consensus 50 ~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i~~L~~Lr~L~L~~--- 125 (286)
.++|..+ -.....+.+.-|..... .+.+|+.++.||.|||++ |.|..+ |++|..|..|-.|-+-+
T Consensus 59 ~eVP~~L--P~~tveirLdqN~I~~i-----P~~aF~~l~~LRrLdLS~----N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 59 TEVPANL--PPETVEIRLDQNQISSI-----PPGAFKTLHRLRRLDLSK----NNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred ccCcccC--CCcceEEEeccCCcccC-----Chhhccchhhhceecccc----cchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 3455443 23345667777765432 678999999999999999 998854 78999998876665544
Q ss_pred ccccCCC-C-CCC----------CCccc-ccccccccCCCEEEecCCCccccccc-cccccccccccccc
Q 039475 126 VEELSET-C-YCP----------SLKRL-PQGRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFT 181 (286)
Q Consensus 126 ~~~LP~~-~-~~~----------~l~~L-P~~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~ 181 (286)
|+.+|.. + +.. .+.-+ ...++.|++|..|.+.+|.+..++.+ |..+.+++++++-.
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQ 197 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhc
Confidence 8899988 5 222 22222 35678889999999999988888875 88888888886543
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.18 E-value=3.7e-07 Score=78.59 Aligned_cols=114 Identities=22% Similarity=0.213 Sum_probs=66.5
Q ss_pred cCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEeccc--ccccCCC-CC
Q 039475 58 DAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSA--VEELSET-CY 134 (286)
Q Consensus 58 ~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~--~~~LP~~-~~ 134 (286)
-.+.|..+++++|.... +.....-.+.+|+|+++. |.+..+-. +..|.+|+.|||++ +.++-.. ..
T Consensus 282 TWq~LtelDLS~N~I~~------iDESvKL~Pkir~L~lS~----N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~K 350 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQ------IDESVKLAPKLRRLILSQ----NRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLK 350 (490)
T ss_pred hHhhhhhccccccchhh------hhhhhhhccceeEEeccc----cceeeehh-hhhcccceEeecccchhHhhhhhHhh
Confidence 34566777777776433 444455666777777777 66665543 66677777777776 2222222 11
Q ss_pred C----------CCCcccccccccccCCCEEEecCCCccccc--cccccccccccccccccc
Q 039475 135 C----------PSLKRLPQGRGKLINLRHLIFDKDYLAYMA--NGFERLTSLRTLSGFTVA 183 (286)
Q Consensus 135 ~----------~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP--~~i~~L~~L~~L~~~~~~ 183 (286)
. +.++.| +++++|.+|..||+++|++..+- .+||+|+.|+++.+.++.
T Consensus 351 LGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hcCEeeeehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 1 222222 35667777777777777666543 457777777776655443
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=6.8e-07 Score=80.30 Aligned_cols=82 Identities=20% Similarity=0.111 Sum_probs=51.3
Q ss_pred CCceEEEeecCCCCCCc--hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccc--
Q 039475 37 EKLRHLTLMLGLPTKFP--VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGL-- 112 (286)
Q Consensus 37 ~~~r~ls~~~~~~~~~~--~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i-- 112 (286)
++.|.+++........+ .-...++++|.|+++.|-+..-.. +..+...|++|+.|.|+. |.+...-++.
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~---v~~i~eqLp~Le~LNls~----Nrl~~~~~s~~~ 193 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFP---VLKIAEQLPSLENLNLSS----NRLSNFISSNTT 193 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHH---HHHHHHhcccchhccccc----ccccCCccccch
Confidence 45677777766554333 245567888888888876432211 445567788888888888 6654333222
Q ss_pred cCCCCCcEEeccc
Q 039475 113 ENLIHLRYLKLSA 125 (286)
Q Consensus 113 ~~L~~Lr~L~L~~ 125 (286)
..+.||+.|.|+.
T Consensus 194 ~~l~~lK~L~l~~ 206 (505)
T KOG3207|consen 194 LLLSHLKQLVLNS 206 (505)
T ss_pred hhhhhhheEEecc
Confidence 3567777777775
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.12 E-value=4e-07 Score=78.40 Aligned_cols=132 Identities=23% Similarity=0.207 Sum_probs=99.5
Q ss_pred hcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccc
Q 039475 85 FDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYM 164 (286)
Q Consensus 85 ~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~l 164 (286)
....+.|..|||++ |.|+.+-++..-++.+|.|+++. +.+..+-. +..|.+|++||+++|.+.++
T Consensus 280 ~dTWq~LtelDLS~----N~I~~iDESvKL~Pkir~L~lS~----------N~i~~v~n-La~L~~L~~LDLS~N~Ls~~ 344 (490)
T KOG1259|consen 280 ADTWQELTELDLSG----NLITQIDESVKLAPKLRRLILSQ----------NRIRTVQN-LAELPQLQLLDLSGNLLAEC 344 (490)
T ss_pred cchHhhhhhccccc----cchhhhhhhhhhccceeEEeccc----------cceeeehh-hhhcccceEeecccchhHhh
Confidence 35678899999999 99999999999999999999996 76776654 78899999999999988888
Q ss_pred cccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCccc-chhhhhhcCCCCCCceEEEEeCCC
Q 039475 165 ANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQM-RLKINAHLEKKKNLVHLTLDFDKG 243 (286)
Q Consensus 165 P~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~-~~~~~~~l~~l~~L~~L~L~~~~~ 243 (286)
-.+-.+|.+.++|.+..+. ...+..+++|-.|- .|.+.+ ..- .-.....+++++.|+.|.|..|..
T Consensus 345 ~Gwh~KLGNIKtL~La~N~---------iE~LSGL~KLYSLv-nLDl~~---N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 345 VGWHLKLGNIKTLKLAQNK---------IETLSGLRKLYSLV-NLDLSS---NQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhHhhhcCEeeeehhhhh---------HhhhhhhHhhhhhe-eccccc---cchhhHHHhcccccccHHHHHhhcCCCc
Confidence 6667788888888876553 23444555555444 344432 221 222346789999999999999977
Q ss_pred C
Q 039475 244 E 244 (286)
Q Consensus 244 ~ 244 (286)
.
T Consensus 412 ~ 412 (490)
T KOG1259|consen 412 A 412 (490)
T ss_pred c
Confidence 5
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.10 E-value=2.3e-06 Score=56.84 Aligned_cols=57 Identities=32% Similarity=0.455 Sum_probs=47.0
Q ss_pred CCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cccCCCCCcEEeccc
Q 039475 60 KKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLENLIHLRYLKLSA 125 (286)
Q Consensus 60 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~L~~Lr~L~L~~ 125 (286)
++|++|++.+|..... .+..|.++++|++|++++ |.+..+|. .+.++++|++|++++
T Consensus 1 p~L~~L~l~~n~l~~i-----~~~~f~~l~~L~~L~l~~----N~l~~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEI-----PPDSFSNLPNLETLDLSN----NNLTSIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TTESEEEETSSTESEE-----CTTTTTTGTTESEEEETS----SSESEEETTTTTTSTTESEEEETS
T ss_pred CcCcEEECCCCCCCcc-----CHHHHcCCCCCCEeEccC----CccCccCHHHHcCCCCCCEEeCcC
Confidence 5788999998865431 556889999999999999 99888765 779999999999985
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=8.8e-06 Score=50.22 Aligned_cols=32 Identities=34% Similarity=0.524 Sum_probs=14.8
Q ss_pred CCcEEEeecccCCccCcccCccccCCCCCcEEeccc
Q 039475 90 CLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSA 125 (286)
Q Consensus 90 ~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~ 125 (286)
+|++|++++ +.+..+|..|++|++|++|++++
T Consensus 2 ~L~~L~l~~----N~i~~l~~~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 2 NLEELDLSN----NQITDLPPELSNLPNLETLNLSN 33 (44)
T ss_dssp T-SEEEETS----SS-SSHGGHGTTCTTSSEEEETS
T ss_pred cceEEEccC----CCCcccCchHhCCCCCCEEEecC
Confidence 345555555 44544444445555555555443
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=9.3e-06 Score=50.11 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=24.7
Q ss_pred CCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCccccc
Q 039475 117 HLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMA 165 (286)
Q Consensus 117 ~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP 165 (286)
+|++|++++ +.++.+|..+++|++|++|++++|.+..+|
T Consensus 2 ~L~~L~l~~----------N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSN----------NQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETS----------SS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccC----------CCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 566777764 566667666777777777777776666554
No 41
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.82 E-value=8.9e-06 Score=79.39 Aligned_cols=106 Identities=22% Similarity=0.246 Sum_probs=76.6
Q ss_pred CCceEEEeecCCC--CCCchhh-hcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcccc
Q 039475 37 EKLRHLTLMLGLP--TKFPVSI-FDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLE 113 (286)
Q Consensus 37 ~~~r~ls~~~~~~--~~~~~~~-~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~ 113 (286)
.+.|++.+.+... ..-+..+ ..+|.||+|.+.|-...... +...+.+|++|+.||+++ +++..+ ..|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d----F~~lc~sFpNL~sLDIS~----TnI~nl-~GIS 192 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD----FSQLCASFPNLRSLDISG----TNISNL-SGIS 192 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh----HHHHhhccCccceeecCC----CCccCc-HHHh
Confidence 4577887766443 1112233 46899999999997654322 556678999999999999 888887 7899
Q ss_pred CCCCCcEEecccccccCCCCCCCCCcccc--cccccccCCCEEEecCCCc
Q 039475 114 NLIHLRYLKLSAVEELSETCYCPSLKRLP--QGRGKLINLRHLIFDKDYL 161 (286)
Q Consensus 114 ~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP--~~i~~L~~L~~L~l~~~~~ 161 (286)
+|++|+.|.+++ -.+..-. ..+.+|++|++||++....
T Consensus 193 ~LknLq~L~mrn----------Le~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 193 RLKNLQVLSMRN----------LEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred ccccHHHHhccC----------CCCCchhhHHHHhcccCCCeeecccccc
Confidence 999999999975 2232222 2567899999999987433
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.63 E-value=0.00013 Score=66.51 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=13.6
Q ss_pred CCCEEEecCCCccccccccccccccccccc
Q 039475 150 NLRHLIFDKDYLAYMANGFERLTSLRTLSG 179 (286)
Q Consensus 150 ~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~ 179 (286)
+|++|++.++....+|.++. .+|+.|.+
T Consensus 157 SLk~L~Is~c~~i~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 157 SLKTLSLTGCSNIILPEKLP--ESLQSITL 184 (426)
T ss_pred cccEEEecCCCcccCccccc--ccCcEEEe
Confidence 55666665554444443333 24444443
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.55 E-value=1.3e-05 Score=74.28 Aligned_cols=105 Identities=23% Similarity=0.328 Sum_probs=55.6
Q ss_pred hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCC
Q 039475 56 IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYC 135 (286)
Q Consensus 56 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~ 135 (286)
+..+++|..|++.++.... +...+..+.+|++|++++ +.|..+. .+..+..|+.|++++
T Consensus 91 l~~~~~l~~l~l~~n~i~~------i~~~l~~~~~L~~L~ls~----N~I~~i~-~l~~l~~L~~L~l~~---------- 149 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK------IENLLSSLVNLQVLDLSF----NKITKLE-GLSTLTLLKELNLSG---------- 149 (414)
T ss_pred cccccceeeeeccccchhh------cccchhhhhcchheeccc----ccccccc-chhhccchhhheecc----------
Confidence 4455556666666655432 222244566666666666 6655544 455555566666654
Q ss_pred CCCcccccccccccCCCEEEecCCCccccccc-ccccccccccccccc
Q 039475 136 PSLKRLPQGRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTV 182 (286)
Q Consensus 136 ~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~ 182 (286)
+.+..++ ++..+++|+.+++++|.+..+... ...+.+++.+.+..+
T Consensus 150 N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 150 NLISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred Ccchhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 4344433 334466666666666666655432 355555555554433
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=9.4e-06 Score=73.16 Aligned_cols=190 Identities=17% Similarity=0.105 Sum_probs=112.5
Q ss_pred cccCCceEEEeecCCCCC---CchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCc--cc
Q 039475 34 SCQEKLRHLTLMLGLPTK---FPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTI--EI 108 (286)
Q Consensus 34 ~~~~~~r~ls~~~~~~~~---~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~--~l 108 (286)
.....+|.|.+..+-+.. +......+++|+.|.++.|....... +.. -..+.+|+.|.|++ |.+. ++
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s~~---~~~l~~lK~L~l~~----CGls~k~V 214 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-SNT---TLLLSHLKQLVLNS----CGLSWKDV 214 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-ccc---hhhhhhhheEEecc----CCCCHHHH
Confidence 345778999888776532 33445689999999999998654321 111 13678899999999 7765 33
Q ss_pred CccccCCCCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccc--cccccccccccccccccccC
Q 039475 109 PKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMAN--GFERLTSLRTLSGFTVARVG 186 (286)
Q Consensus 109 P~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~--~i~~L~~L~~L~~~~~~~~~ 186 (286)
-...-.++.|..|+|.. ...+..--....-++.|+.|++++|.+...++ .++.++.|..|.+..++..+
T Consensus 215 ~~~~~~fPsl~~L~L~~---------N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 215 QWILLTFPSLEVLYLEA---------NEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIAS 285 (505)
T ss_pred HHHHHhCCcHHHhhhhc---------ccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcch
Confidence 33445667888888875 11222112223446678888888888877774 37788888877766655431
Q ss_pred CccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 187 GKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 187 ~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
... -...+......+.+|+ .|.+....-. .-.....+..+.+|+.|.+.+|...
T Consensus 286 i~~-~d~~s~~kt~~f~kL~-~L~i~~N~I~--~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 286 IAE-PDVESLDKTHTFPKLE-YLNISENNIR--DWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hcC-CCccchhhhcccccce-eeecccCccc--cccccchhhccchhhhhhccccccc
Confidence 000 0011111233445555 5666533211 1122345566677777777777654
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.31 E-value=0.00067 Score=61.95 Aligned_cols=86 Identities=22% Similarity=0.304 Sum_probs=59.2
Q ss_pred hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCcc-CcccCccccCCCCCcEEecccccccCCCCC
Q 039475 56 IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQ-TIEIPKGLENLIHLRYLKLSAVEELSETCY 134 (286)
Q Consensus 56 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~-i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~ 134 (286)
+..+++++.|++.++.... +|. -...|+.|.+++ +. +..+|+.+. .+|++|++++
T Consensus 48 ~~~~~~l~~L~Is~c~L~s------LP~---LP~sLtsL~Lsn----c~nLtsLP~~LP--~nLe~L~Ls~--------- 103 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES------LPV---LPNELTEITIEN----CNNLTTLPGSIP--EGLEKLTVCH--------- 103 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc------cCC---CCCCCcEEEccC----CCCcccCCchhh--hhhhheEccC---------
Confidence 4557889999999885432 452 223699999988 54 778887663 5899999985
Q ss_pred CCCCcccccccccccCCCEEEecCCC---ccccccccccc
Q 039475 135 CPSLKRLPQGRGKLINLRHLIFDKDY---LAYMANGFERL 171 (286)
Q Consensus 135 ~~~l~~LP~~i~~L~~L~~L~l~~~~---~~~lP~~i~~L 171 (286)
|..+..+|.+ |++|++..+. +..+|.++..|
T Consensus 104 Cs~L~sLP~s------Le~L~L~~n~~~~L~~LPssLk~L 137 (426)
T PRK15386 104 CPEISGLPES------VRSLEIKGSATDSIKNVPNGLTSL 137 (426)
T ss_pred cccccccccc------cceEEeCCCCCcccccCcchHhhe
Confidence 7778888864 5556665543 45677655444
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.26 E-value=4e-05 Score=70.94 Aligned_cols=105 Identities=25% Similarity=0.341 Sum_probs=78.5
Q ss_pred CCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCCCC
Q 039475 59 AKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPSL 138 (286)
Q Consensus 59 l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l 138 (286)
+..+..+.+..+.... +-..+..++.|.+|++.+ +.+..+...+..+.+|++|++++ +.+
T Consensus 71 l~~l~~l~l~~n~i~~------~~~~l~~~~~l~~l~l~~----n~i~~i~~~l~~~~~L~~L~ls~----------N~I 130 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK------ILNHLSKLKSLEALDLYD----NKIEKIENLLSSLVNLQVLDLSF----------NKI 130 (414)
T ss_pred hHhHHhhccchhhhhh------hhcccccccceeeeeccc----cchhhcccchhhhhcchheeccc----------ccc
Confidence 4455555554444322 123357889999999999 99998886689999999999986 666
Q ss_pred cccccccccccCCCEEEecCCCccccccccccccccccccccccccc
Q 039475 139 KRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARV 185 (286)
Q Consensus 139 ~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~ 185 (286)
+.+. ++..++.|+.|++.+|.+..+ .++..+++|+.+++..+...
T Consensus 131 ~~i~-~l~~l~~L~~L~l~~N~i~~~-~~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 131 TKLE-GLSTLTLLKELNLSGNLISDI-SGLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred cccc-chhhccchhhheeccCcchhc-cCCccchhhhcccCCcchhh
Confidence 6665 566777799999999998887 46777888988887766543
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.22 E-value=0.00015 Score=63.87 Aligned_cols=198 Identities=17% Similarity=0.084 Sum_probs=98.5
Q ss_pred CCceEEEeecCCCC-----CCchhhhcCCCCcEEEeccCCCCCCCc-----CccchhhhcCCCCCcEEEeecccCCccCc
Q 039475 37 EKLRHLTLMLGLPT-----KFPVSIFDAKKLRSLSLFYDSKGQSAA-----SPVLQGLFDQLTCLRALKIEELWYGDQTI 106 (286)
Q Consensus 37 ~~~r~ls~~~~~~~-----~~~~~~~~l~~Lr~L~l~~~~~~~~~~-----~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~ 106 (286)
..+..+.+..+.+. .+...+.+.+.||...+++-....... -.++...+-..++|++|+|+. |.+.
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD----NA~G 105 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD----NAFG 105 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc----cccC
Confidence 34566666665552 233445556666666666544321100 000122334455677777777 4432
Q ss_pred -----ccCccccCCCCCcEEeccc--ccccCCC-CCCCCCccc--ccccccccCCCEEEecCCCccccc-----cccccc
Q 039475 107 -----EIPKGLENLIHLRYLKLSA--VEELSET-CYCPSLKRL--PQGRGKLINLRHLIFDKDYLAYMA-----NGFERL 171 (286)
Q Consensus 107 -----~lP~~i~~L~~Lr~L~L~~--~~~LP~~-~~~~~l~~L--P~~i~~L~~L~~L~l~~~~~~~lP-----~~i~~L 171 (286)
.+-+-|..+..|+.|.|.+ ++..-.. -+ .-+.++ -.-++.=.+||++..+.|.+..-+ ..+...
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~-~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG-RALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH-HHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 2222334556666666654 1100000 00 000000 112234457888888777665433 235566
Q ss_pred ccccccccccccccCCccCCCC-CCcccccCcccccceeEEcccCCccc-chhhhhhcCCCCCCceEEEEeCCCC
Q 039475 172 TSLRTLSGFTVARVGGKYSSEA-CNLEGLRNLNHLRQFLRICGLGNLQM-RLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 172 ~~L~~L~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~~~L~i~~l~~~~~-~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
+.|+.+.+..++... +.. .....+...++|+ .|.+.+.--... ..++...+..+++|+.|+++.....
T Consensus 185 ~~leevr~~qN~I~~----eG~~al~eal~~~~~Le-vLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRP----EGVTALAEALEHCPHLE-VLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred cccceEEEecccccC----chhHHHHHHHHhCCcce-eeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 677777666655441 001 1123456666666 666665433222 4556667777888888888766554
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.16 E-value=1.4e-05 Score=76.24 Aligned_cols=108 Identities=27% Similarity=0.309 Sum_probs=67.1
Q ss_pred hhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCCCCccccc-ccccccCCCEEEecCCCc
Q 039475 83 GLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQ-GRGKLINLRHLIFDKDYL 161 (286)
Q Consensus 83 ~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~-~i~~L~~L~~L~l~~~~~ 161 (286)
..+.-++.|+.|+|+. |.+..+- .+..|.+|+.|||++ +.+..+|. +.... .|+.|.+++|.+
T Consensus 181 ~SLqll~ale~LnLsh----Nk~~~v~-~Lr~l~~LkhLDlsy----------N~L~~vp~l~~~gc-~L~~L~lrnN~l 244 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSH----NKFTKVD-NLRRLPKLKHLDLSY----------NCLRHVPQLSMVGC-KLQLLNLRNNAL 244 (1096)
T ss_pred HHHHHHHHhhhhccch----hhhhhhH-HHHhccccccccccc----------chhccccccchhhh-hheeeeecccHH
Confidence 3445567788888888 7777655 777788888888876 55665553 12222 377777777766
Q ss_pred ccccccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEccc
Q 039475 162 AYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGL 214 (286)
Q Consensus 162 ~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l 214 (286)
+.+ .+|.+|++|+.|++..+-.. ....+..+..|..|+ .|.+.+.
T Consensus 245 ~tL-~gie~LksL~~LDlsyNll~------~hseL~pLwsLs~L~-~L~LeGN 289 (1096)
T KOG1859|consen 245 TTL-RGIENLKSLYGLDLSYNLLS------EHSELEPLWSLSSLI-VLWLEGN 289 (1096)
T ss_pred Hhh-hhHHhhhhhhccchhHhhhh------cchhhhHHHHHHHHH-HHhhcCC
Confidence 666 56777777777777665443 133344444445454 4555443
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.04 E-value=0.0001 Score=56.75 Aligned_cols=93 Identities=18% Similarity=0.187 Sum_probs=65.4
Q ss_pred hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCC
Q 039475 56 IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYC 135 (286)
Q Consensus 56 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~ 135 (286)
+....+|....+++|.+... .+.+-..++.+..|++++ +.+..+|.++..++.||.|+++.
T Consensus 49 l~~~~el~~i~ls~N~fk~f-----p~kft~kf~t~t~lNl~~----neisdvPeE~Aam~aLr~lNl~~---------- 109 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKF-----PKKFTIKFPTATTLNLAN----NEISDVPEELAAMPALRSLNLRF---------- 109 (177)
T ss_pred HhCCceEEEEecccchhhhC-----CHHHhhccchhhhhhcch----hhhhhchHHHhhhHHhhhccccc----------
Confidence 34455666677777765431 334445566777888888 88888888888888888888874
Q ss_pred CCCcccccccccccCCCEEEecCCCccccccc
Q 039475 136 PSLKRLPQGRGKLINLRHLIFDKDYLAYMANG 167 (286)
Q Consensus 136 ~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~ 167 (286)
+.+...|..|..|.+|-.|+..+|....+|-.
T Consensus 110 N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 110 NPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred CccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 66777777777788888887777766666644
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.00 E-value=3.4e-05 Score=73.77 Aligned_cols=119 Identities=19% Similarity=0.127 Sum_probs=85.4
Q ss_pred EEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-ccCCCCCcE
Q 039475 42 LTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-LENLIHLRY 120 (286)
Q Consensus 42 ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i~~L~~Lr~ 120 (286)
.++..|....+..++.-++.|++|+++.|.... -+.+..+.+|+.|||+. |.+..+|.- -..+ +|+.
T Consensus 169 a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~-------v~~Lr~l~~LkhLDlsy----N~L~~vp~l~~~gc-~L~~ 236 (1096)
T KOG1859|consen 169 ASFSYNRLVLMDESLQLLPALESLNLSHNKFTK-------VDNLRRLPKLKHLDLSY----NCLRHVPQLSMVGC-KLQL 236 (1096)
T ss_pred hhcchhhHHhHHHHHHHHHHhhhhccchhhhhh-------hHHHHhccccccccccc----chhccccccchhhh-hhee
Confidence 344444444455667778899999999997653 23678899999999999 998888852 2223 3899
Q ss_pred EecccccccCCCCCCCCCcccccccccccCCCEEEecCCCccccc--cccccccccccccccccc
Q 039475 121 LKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMA--NGFERLTSLRTLSGFTVA 183 (286)
Q Consensus 121 L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP--~~i~~L~~L~~L~~~~~~ 183 (286)
|.+++ +.+++|- +|.+|++|++||+++|-+.... .-++.|..|+.|.+-++.
T Consensus 237 L~lrn----------N~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 237 LNLRN----------NALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eeecc----------cHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 99986 6677665 7889999999999987655332 226677777777665443
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.99 E-value=0.00031 Score=61.84 Aligned_cols=201 Identities=20% Similarity=0.172 Sum_probs=116.3
Q ss_pred CCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-------ccCCCCCcEEec
Q 039475 51 KFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-------LENLIHLRYLKL 123 (286)
Q Consensus 51 ~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-------i~~L~~Lr~L~L 123 (286)
.+.+....+..+..+.++||.+... .++++...+.+.+.||.-+|++.-.+-...++|+. +-...+|++|||
T Consensus 21 ~v~~~~~~~~s~~~l~lsgnt~G~E-Aa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldL 99 (382)
T KOG1909|consen 21 DVEEELEPMDSLTKLDLSGNTFGTE-AARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDL 99 (382)
T ss_pred hHHHHhcccCceEEEeccCCchhHH-HHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeec
Confidence 3455667788999999999987543 34567778888999999999872110012356653 345568999999
Q ss_pred cc--ccccCCCCCCCCCcccccccccccCCCEEEecCCCccccccc--------------ccccccccccccccccccCC
Q 039475 124 SA--VEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANG--------------FERLTSLRTLSGFTVARVGG 187 (286)
Q Consensus 124 ~~--~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~--------------i~~L~~L~~L~~~~~~~~~~ 187 (286)
|+ ++ -+.++.|-.-+...+.|++|++.+|.+...-.+ +++-.+|+++....+....
T Consensus 100 SDNA~G-------~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen- 171 (382)
T KOG1909|consen 100 SDNAFG-------PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN- 171 (382)
T ss_pred cccccC-------ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc-
Confidence 86 11 122233333456678899999988766432211 2233345554433332210
Q ss_pred ccCCCCC-Cc-ccccCcccccceeEEcccCCccc-chhhhhhcCCCCCCceEEEEeCCCCCCccchhhccccccchhhHH
Q 039475 188 KYSSEAC-NL-EGLRNLNHLRQFLRICGLGNLQM-RLKINAHLEKKKNLVHLTLDFDKGEDEEDEDYEEAPNLMNEENEA 264 (286)
Q Consensus 188 ~~~~~~~-~~-~~l~~L~~L~~~L~i~~l~~~~~-~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (286)
.+. .+ ..++..+.|+ .+.+....-... ..++...+..+++|+.|+|..|..+..
T Consensus 172 ----~ga~~~A~~~~~~~~le-evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e------------------ 228 (382)
T KOG1909|consen 172 ----GGATALAEAFQSHPTLE-EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE------------------ 228 (382)
T ss_pred ----ccHHHHHHHHHhccccc-eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH------------------
Confidence 000 01 1133334444 555554322222 335667788888899999988887732
Q ss_pred HHHHHHHhcCCCCCcccCC
Q 039475 265 KQEAICEALQAPPNIVIRN 283 (286)
Q Consensus 265 ~~~~~~~~L~~~~~L~~l~ 283 (286)
....+-+.|+..++|+.|+
T Consensus 229 gs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 229 GSVALAKALSSWPHLRELN 247 (382)
T ss_pred HHHHHHHHhcccchheeec
Confidence 1233445566666777765
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.95 E-value=6.2e-05 Score=57.94 Aligned_cols=85 Identities=15% Similarity=0.152 Sum_probs=66.5
Q ss_pred hhcCCCCCcEEEeecccCCccCcccCccccCC-CCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcc
Q 039475 84 LFDQLTCLRALKIEELWYGDQTIEIPKGLENL-IHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLA 162 (286)
Q Consensus 84 ~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L-~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~ 162 (286)
.+....+|...+|++ |.+..+|+.+... .-+..|++.+ +.+.++|.++..|+.|+.|+++.|.+.
T Consensus 48 ~l~~~~el~~i~ls~----N~fk~fp~kft~kf~t~t~lNl~~----------neisdvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 48 MLSKGYELTKISLSD----NGFKKFPKKFTIKFPTATTLNLAN----------NEISDVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred HHhCCceEEEEeccc----chhhhCCHHHhhccchhhhhhcch----------hhhhhchHHHhhhHHhhhcccccCccc
Confidence 345566777778888 8888888877443 4778888875 788899999999999999999999888
Q ss_pred cccccccccccccccccccc
Q 039475 163 YMANGFERLTSLRTLSGFTV 182 (286)
Q Consensus 163 ~lP~~i~~L~~L~~L~~~~~ 182 (286)
..|+-|..|.+|-.|+.-..
T Consensus 114 ~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 114 AEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred cchHHHHHHHhHHHhcCCCC
Confidence 88888888887777765433
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.57 E-value=0.0027 Score=52.10 Aligned_cols=105 Identities=20% Similarity=0.248 Sum_probs=73.4
Q ss_pred CCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCCCCccccccccc-ccCCCEEEecCCCccccc-
Q 039475 88 LTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGK-LINLRHLIFDKDYLAYMA- 165 (286)
Q Consensus 88 l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~-L~~L~~L~l~~~~~~~lP- 165 (286)
+...-.+||++ +.+..++ .+..+..|.+|.+.+ +++..+-..+.. +++|+.|.+.+|++..+-
T Consensus 41 ~d~~d~iDLtd----Ndl~~l~-~lp~l~rL~tLll~n----------NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~d 105 (233)
T KOG1644|consen 41 LDQFDAIDLTD----NDLRKLD-NLPHLPRLHTLLLNN----------NRITRIDPDLDTFLPNLKTLILTNNSIQELGD 105 (233)
T ss_pred ccccceecccc----cchhhcc-cCCCccccceEEecC----------CcceeeccchhhhccccceEEecCcchhhhhh
Confidence 34567889999 8877665 577888999999985 888888777754 457999999999888763
Q ss_pred -ccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEc
Q 039475 166 -NGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRIC 212 (286)
Q Consensus 166 -~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~ 212 (286)
..+..++.|++|.+..+.... +.....-.+-.+++|+ .|+..
T Consensus 106 l~pLa~~p~L~~Ltll~Npv~~----k~~YR~yvl~klp~l~-~LDF~ 148 (233)
T KOG1644|consen 106 LDPLASCPKLEYLTLLGNPVEH----KKNYRLYVLYKLPSLR-TLDFQ 148 (233)
T ss_pred cchhccCCccceeeecCCchhc----ccCceeEEEEecCcce-Eeehh
Confidence 346677788888776665442 1133344455666555 55555
No 54
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.29 E-value=0.0019 Score=33.32 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=14.5
Q ss_pred CCCEEEecCCCccccccccccc
Q 039475 150 NLRHLIFDKDYLAYMANGFERL 171 (286)
Q Consensus 150 ~L~~L~l~~~~~~~lP~~i~~L 171 (286)
+|++|++++|.++.+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4677777777777777666543
No 55
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.16 E-value=0.0021 Score=33.20 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=14.8
Q ss_pred CCcEEEeecccCCccCcccCccccCC
Q 039475 90 CLRALKIEELWYGDQTIEIPKGLENL 115 (286)
Q Consensus 90 ~Lr~L~L~~~~~~~~i~~lP~~i~~L 115 (286)
+|++||+++ |.++.+|++|++|
T Consensus 1 ~L~~Ldls~----n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSG----NNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETS----SEESEEGTTTTT-
T ss_pred CccEEECCC----CcCEeCChhhcCC
Confidence 367777777 7777777766553
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.86 E-value=0.014 Score=48.06 Aligned_cols=105 Identities=21% Similarity=0.229 Sum_probs=74.4
Q ss_pred CCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC-CCCcEEecccccccCCCCCCCC
Q 039475 59 AKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL-IHLRYLKLSAVEELSETCYCPS 137 (286)
Q Consensus 59 l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L-~~Lr~L~L~~~~~LP~~~~~~~ 137 (286)
+.+...+++.+|.... -+.|..+..|..|.|.+ |.|..+-..++.+ .+|..|.|.+ ++
T Consensus 41 ~d~~d~iDLtdNdl~~-------l~~lp~l~rL~tLll~n----NrIt~I~p~L~~~~p~l~~L~Ltn----------Ns 99 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK-------LDNLPHLPRLHTLLLNN----NRITRIDPDLDTFLPNLKTLILTN----------NS 99 (233)
T ss_pred ccccceecccccchhh-------cccCCCccccceEEecC----CcceeeccchhhhccccceEEecC----------cc
Confidence 3355677888877542 23367888899999999 8888887777654 5688888875 66
Q ss_pred Cccccc--ccccccCCCEEEecCCCcccccc----cccccccccccccccccc
Q 039475 138 LKRLPQ--GRGKLINLRHLIFDKDYLAYMAN----GFERLTSLRTLSGFTVAR 184 (286)
Q Consensus 138 l~~LP~--~i~~L~~L~~L~l~~~~~~~lP~----~i~~L~~L~~L~~~~~~~ 184 (286)
+++|-+ .+..+++|++|.+-+|.+...+. -+.++++|++|+...+..
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 666532 34566788888888877765442 278888999998776643
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.0033 Score=54.62 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=7.6
Q ss_pred hcCCCCCCceEEEEeCC
Q 039475 226 HLEKKKNLVHLTLDFDK 242 (286)
Q Consensus 226 ~l~~l~~L~~L~L~~~~ 242 (286)
.+.++++|..|.++.+.
T Consensus 244 ~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 244 ALNGFPQLVDLRVSENP 260 (418)
T ss_pred HHcCCchhheeeccCCc
Confidence 34444444444444443
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.36 E-value=0.0084 Score=50.98 Aligned_cols=89 Identities=22% Similarity=0.278 Sum_probs=56.5
Q ss_pred chhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCC--CC-cccccccccccCCCEEEec
Q 039475 81 LQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCP--SL-KRLPQGRGKLINLRHLIFD 157 (286)
Q Consensus 81 ~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~--~l-~~LP~~i~~L~~L~~L~l~ 157 (286)
+......+..|..|.+.+ ..++.+- .+-.|++|++|.++. + .+ ..++.-..++++|++|.++
T Consensus 35 ~~gl~d~~~~le~ls~~n----~gltt~~-~~P~Lp~LkkL~lsd----------n~~~~~~~l~vl~e~~P~l~~l~ls 99 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVIN----VGLTTLT-NFPKLPKLKKLELSD----------NYRRVSGGLEVLAEKAPNLKVLNLS 99 (260)
T ss_pred cccccccccchhhhhhhc----cceeecc-cCCCcchhhhhcccC----------CcccccccceehhhhCCceeEEeec
Confidence 344445566666666666 5443322 334688999999984 4 22 2455555666999999999
Q ss_pred CCCccccc--ccccccccccccccccccc
Q 039475 158 KDYLAYMA--NGFERLTSLRTLSGFTVAR 184 (286)
Q Consensus 158 ~~~~~~lP--~~i~~L~~L~~L~~~~~~~ 184 (286)
+|++..+- ....++.+|..|+++.+..
T Consensus 100 ~Nki~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 100 GNKIKDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred CCccccccccchhhhhcchhhhhcccCCc
Confidence 99876421 2356666777777777653
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=0.0067 Score=52.80 Aligned_cols=63 Identities=14% Similarity=0.005 Sum_probs=34.4
Q ss_pred ccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCccc---chhhhhhcCCCCCCceEE
Q 039475 168 FERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQM---RLKINAHLEKKKNLVHLT 237 (286)
Q Consensus 168 i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~---~~~~~~~l~~l~~L~~L~ 237 (286)
...++.+-.|.+...+.. ....+.++..+++|+ .|.+.+..-... .+...-.++.+++++-|+
T Consensus 220 se~~p~~~~LnL~~~~id------swasvD~Ln~f~~l~-dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 220 SEPFPSLSCLNLGANNID------SWASVDALNGFPQLV-DLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred CCCCCcchhhhhcccccc------cHHHHHHHcCCchhh-eeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 334444444444444444 355677788888888 788775433222 222223456667766664
No 60
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.0037 Score=54.38 Aligned_cols=62 Identities=21% Similarity=0.186 Sum_probs=43.0
Q ss_pred ccccCCCEEEecCCCcc--cccccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEccc
Q 039475 146 GKLINLRHLIFDKDYLA--YMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGL 214 (286)
Q Consensus 146 ~~L~~L~~L~l~~~~~~--~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l 214 (286)
.+.++|-+||++++..- ..-..|-+++.|++|.+..|... .+..+-++...+.|. +|.+.++
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i------~p~~~~~l~s~psl~-yLdv~g~ 373 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI------IPETLLELNSKPSLV-YLDVFGC 373 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC------ChHHeeeeccCcceE-EEEeccc
Confidence 45678999999885332 33355788899999988877644 355566677777776 6777643
No 61
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.0036 Score=54.44 Aligned_cols=156 Identities=19% Similarity=0.150 Sum_probs=86.4
Q ss_pred CCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCc-ccCccccCCCCCcEEecccccccCCCCCCCCC
Q 039475 60 KKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTI-EIPKGLENLIHLRYLKLSAVEELSETCYCPSL 138 (286)
Q Consensus 60 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~-~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l 138 (286)
++|+.|++++....... +...++.+.+|+-|.|+| ..+. .+-..|.+=.+|+.|+|+. |+.+
T Consensus 185 sRlq~lDLS~s~it~st----l~~iLs~C~kLk~lSlEg----~~LdD~I~~~iAkN~~L~~lnlsm---------~sG~ 247 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVST----LHGILSQCSKLKNLSLEG----LRLDDPIVNTIAKNSNLVRLNLSM---------CSGF 247 (419)
T ss_pred hhhHHhhcchhheeHHH----HHHHHHHHHhhhhccccc----cccCcHHHHHHhccccceeecccc---------cccc
Confidence 45777777776654322 555667777888888888 6655 3445666777788888874 4433
Q ss_pred ccccc--ccccccCCCEEEecCCCcc------------------------------cccccccccccccccccccccccC
Q 039475 139 KRLPQ--GRGKLINLRHLIFDKDYLA------------------------------YMANGFERLTSLRTLSGFTVARVG 186 (286)
Q Consensus 139 ~~LP~--~i~~L~~L~~L~l~~~~~~------------------------------~lP~~i~~L~~L~~L~~~~~~~~~ 186 (286)
++.-. -+.+++.|+.|+++++... .+.--..+..+|.+|+++++...
T Consensus 248 t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l- 326 (419)
T KOG2120|consen 248 TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML- 326 (419)
T ss_pred chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc-
Confidence 33211 1234444444444432110 11001235566667777665433
Q ss_pred CccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeC
Q 039475 187 GKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFD 241 (286)
Q Consensus 187 ~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~ 241 (286)
....+.++-+++.|+ .|++..+..+. ......+..++.|.+|++...
T Consensus 327 -----~~~~~~~~~kf~~L~-~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 327 -----KNDCFQEFFKFNYLQ-HLSLSRCYDII--PETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred -----CchHHHHHHhcchhe-eeehhhhcCCC--hHHeeeeccCcceEEEEeccc
Confidence 123344555666666 67776544332 222345677888888888543
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.56 E-value=0.005 Score=53.08 Aligned_cols=75 Identities=23% Similarity=0.205 Sum_probs=34.4
Q ss_pred CCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCccccc--c
Q 039475 89 TCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMA--N 166 (286)
Q Consensus 89 ~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP--~ 166 (286)
.+.+-|++-| +.+..+. -+.++..|+.|.|+ .++++.|- .+...++|+.|+|+.|.|..+- .
T Consensus 19 ~~vkKLNcwg----~~L~DIs-ic~kMp~lEVLsLS----------vNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~ 82 (388)
T KOG2123|consen 19 ENVKKLNCWG----CGLDDIS-ICEKMPLLEVLSLS----------VNKISSLA-PLQRCTRLKELYLRKNCIESLDELE 82 (388)
T ss_pred HHhhhhcccC----CCccHHH-HHHhcccceeEEee----------ccccccch-hHHHHHHHHHHHHHhcccccHHHHH
Confidence 3344444444 4444332 22345555555555 24444442 2444555555555555554432 1
Q ss_pred ccccccccccccc
Q 039475 167 GFERLTSLRTLSG 179 (286)
Q Consensus 167 ~i~~L~~L~~L~~ 179 (286)
.+.++++|++|-+
T Consensus 83 YLknlpsLr~LWL 95 (388)
T KOG2123|consen 83 YLKNLPSLRTLWL 95 (388)
T ss_pred HHhcCchhhhHhh
Confidence 2344444444433
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.11 E-value=0.17 Score=38.15 Aligned_cols=99 Identities=15% Similarity=0.323 Sum_probs=42.4
Q ss_pred hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cccCCCCCcEEecccccccCCCCC
Q 039475 56 IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLENLIHLRYLKLSAVEELSETCY 134 (286)
Q Consensus 56 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~L~~Lr~L~L~~~~~LP~~~~ 134 (286)
|.+.++|+.+.+..... . +-...|.++..|+.+.+.+ + +..++. .+.++..|+++.+..
T Consensus 8 F~~~~~l~~i~~~~~~~---~---I~~~~F~~~~~l~~i~~~~----~-~~~i~~~~F~~~~~l~~i~~~~--------- 67 (129)
T PF13306_consen 8 FYNCSNLESITFPNTIK---K---IGENAFSNCTSLKSINFPN----N-LTSIGDNAFSNCKSLESITFPN--------- 67 (129)
T ss_dssp TTT-TT--EEEETST-----E---E-TTTTTT-TT-SEEEESS----T-TSCE-TTTTTT-TT-EEEEETS---------
T ss_pred HhCCCCCCEEEECCCee---E---eChhhcccccccccccccc----c-ccccceeeeecccccccccccc---------
Confidence 44555666666653211 1 1334566666677777655 3 444444 445665677777652
Q ss_pred CCCCccccc-ccccccCCCEEEecCCCccccccc-ccccccccccc
Q 039475 135 CPSLKRLPQ-GRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLS 178 (286)
Q Consensus 135 ~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~ 178 (286)
.+..++. .+...++|+.+.+..+ +..++.. +.+. +|+.+.
T Consensus 68 --~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~ 109 (129)
T PF13306_consen 68 --NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEIN 109 (129)
T ss_dssp --TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE
T ss_pred --cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEE
Confidence 3444443 2344556666666543 4444433 5554 555554
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.90 E-value=0.045 Score=47.22 Aligned_cols=107 Identities=17% Similarity=0.134 Sum_probs=70.1
Q ss_pred CCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCcc-CcccCc-------cccCCCCCcEEe
Q 039475 51 KFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQ-TIEIPK-------GLENLIHLRYLK 122 (286)
Q Consensus 51 ~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~-i~~lP~-------~i~~L~~Lr~L~ 122 (286)
.+...+..+..+..++++||.+... +.+.+...+.+-+.|++-.++..- ... ..++|+ .+-++++|+..+
T Consensus 21 ~v~eel~~~d~~~evdLSGNtigtE-A~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~ 98 (388)
T COG5238 21 GVVEELEMMDELVEVDLSGNTIGTE-AMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVD 98 (388)
T ss_pred HHHHHHHhhcceeEEeccCCcccHH-HHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeee
Confidence 3455566688999999999987543 234467777888899999988721 011 123443 556889999999
Q ss_pred cccccccCCC-CCCCCCcccccccccccCCCEEEecCCCccccc
Q 039475 123 LSAVEELSET-CYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMA 165 (286)
Q Consensus 123 L~~~~~LP~~-~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP 165 (286)
|++ . ++......|-.-|.+-+.|.||.+++|.+..+.
T Consensus 99 LSD------NAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~a 136 (388)
T COG5238 99 LSD------NAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIA 136 (388)
T ss_pred ccc------cccCcccchHHHHHHhcCCCceeEEeecCCCCccc
Confidence 986 0 011112223334677789999999998776543
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.87 E-value=0.034 Score=47.34 Aligned_cols=110 Identities=23% Similarity=0.191 Sum_probs=72.2
Q ss_pred chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCc--cCc-ccCccccCCCCCcEEeccccccc
Q 039475 53 PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGD--QTI-EIPKGLENLIHLRYLKLSAVEEL 129 (286)
Q Consensus 53 ~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~--~i~-~lP~~i~~L~~Lr~L~L~~~~~L 129 (286)
..-...+..|..|.+.+...+.. ..|..+++|+.|+++. | .+. .++.-.-++.+|++|++++
T Consensus 36 ~gl~d~~~~le~ls~~n~gltt~-------~~~P~Lp~LkkL~lsd----n~~~~~~~l~vl~e~~P~l~~l~ls~---- 100 (260)
T KOG2739|consen 36 GGLTDEFVELELLSVINVGLTTL-------TNFPKLPKLKKLELSD----NYRRVSGGLEVLAEKAPNLKVLNLSG---- 100 (260)
T ss_pred ccccccccchhhhhhhccceeec-------ccCCCcchhhhhcccC----CcccccccceehhhhCCceeEEeecC----
Confidence 33344556666666666654332 1256788999999999 7 333 5555556669999999986
Q ss_pred CCCCCCCCCc---ccccccccccCCCEEEecCCCccccc--c--cccccccccccccccccc
Q 039475 130 SETCYCPSLK---RLPQGRGKLINLRHLIFDKDYLAYMA--N--GFERLTSLRTLSGFTVAR 184 (286)
Q Consensus 130 P~~~~~~~l~---~LP~~i~~L~~L~~L~l~~~~~~~lP--~--~i~~L~~L~~L~~~~~~~ 184 (286)
++++ .++ .+.++.+|..|++..+....+- . -|.-+++|..|+.+.+..
T Consensus 101 ------Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 101 ------NKIKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred ------Cccccccccc-hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence 4343 222 3456778888888876555442 2 266778999998877754
No 66
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.73 E-value=0.049 Score=26.06 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=8.1
Q ss_pred CCCEEEecCCCccccc
Q 039475 150 NLRHLIFDKDYLAYMA 165 (286)
Q Consensus 150 ~L~~L~l~~~~~~~lP 165 (286)
+|+.|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5677777777666655
No 67
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.39 E-value=0.052 Score=25.97 Aligned_cols=16 Identities=25% Similarity=0.590 Sum_probs=7.8
Q ss_pred CCcEEEeecccCCccCcccC
Q 039475 90 CLRALKIEELWYGDQTIEIP 109 (286)
Q Consensus 90 ~Lr~L~L~~~~~~~~i~~lP 109 (286)
+|++|++++ |.+.++|
T Consensus 2 ~L~~L~l~~----n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSN----NRLTSLP 17 (17)
T ss_dssp T-SEEEETS----S--SSE-
T ss_pred ccCEEECCC----CCCCCCc
Confidence 566677766 6666554
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.00 E-value=0.0094 Score=51.43 Aligned_cols=103 Identities=17% Similarity=0.252 Sum_probs=68.7
Q ss_pred cCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCCC
Q 039475 58 DAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPS 137 (286)
Q Consensus 58 ~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~ 137 (286)
++.+.+.|.+.|+.... -.++.+|+.|.||.|+- |.|..+- .+..++.|+.|+|+. +.
T Consensus 17 dl~~vkKLNcwg~~L~D-------Isic~kMp~lEVLsLSv----NkIssL~-pl~rCtrLkElYLRk----------N~ 74 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDD-------ISICEKMPLLEVLSLSV----NKISSLA-PLQRCTRLKELYLRK----------NC 74 (388)
T ss_pred HHHHhhhhcccCCCccH-------HHHHHhcccceeEEeec----cccccch-hHHHHHHHHHHHHHh----------cc
Confidence 45666777777776542 13467888889999988 8887764 577888888888875 54
Q ss_pred Cccccc--ccccccCCCEEEecCCCcc-cccc-----cccccccccccccccc
Q 039475 138 LKRLPQ--GRGKLINLRHLIFDKDYLA-YMAN-----GFERLTSLRTLSGFTV 182 (286)
Q Consensus 138 l~~LP~--~i~~L~~L~~L~l~~~~~~-~lP~-----~i~~L~~L~~L~~~~~ 182 (286)
+..|-+ -+.+|++|+.|.+..|... .-+. -+.-|.+|++|+...+
T Consensus 75 I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 75 IESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred cccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCccc
Confidence 554432 3567888888888775433 1221 2566778888765544
No 69
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.58 E-value=0.088 Score=28.03 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=17.0
Q ss_pred ccCCCEEEecCCCccccccc
Q 039475 148 LINLRHLIFDKDYLAYMANG 167 (286)
Q Consensus 148 L~~L~~L~l~~~~~~~lP~~ 167 (286)
|++|++|++.+|.+..+|.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 56889999999999888876
No 70
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.58 E-value=0.088 Score=28.03 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=17.0
Q ss_pred ccCCCEEEecCCCccccccc
Q 039475 148 LINLRHLIFDKDYLAYMANG 167 (286)
Q Consensus 148 L~~L~~L~l~~~~~~~lP~~ 167 (286)
|++|++|++.+|.+..+|.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 56889999999999888876
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.43 E-value=0.0041 Score=52.23 Aligned_cols=86 Identities=19% Similarity=0.115 Sum_probs=57.5
Q ss_pred hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCC
Q 039475 56 IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYC 135 (286)
Q Consensus 56 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~ 135 (286)
+...++...|+++.+.... +..-|+-++.|..||++. +.+.-+|..++.+..++.+++..
T Consensus 38 i~~~kr~tvld~~s~r~vn------~~~n~s~~t~~~rl~~sk----nq~~~~~~d~~q~~e~~~~~~~~---------- 97 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN------LGKNFSILTRLVRLDLSK----NQIKFLPKDAKQQRETVNAASHK---------- 97 (326)
T ss_pred hhccceeeeehhhhhHHHh------hccchHHHHHHHHHhccH----hhHhhChhhHHHHHHHHHHHhhc----------
Confidence 4456666666666665322 233345556666667776 66777777777777777776654
Q ss_pred CCCcccccccccccCCCEEEecCCCc
Q 039475 136 PSLKRLPQGRGKLINLRHLIFDKDYL 161 (286)
Q Consensus 136 ~~l~~LP~~i~~L~~L~~L~l~~~~~ 161 (286)
++.+.+|.+++++..+++++..+|.+
T Consensus 98 n~~~~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 98 NNHSQQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred cchhhCCccccccCCcchhhhccCcc
Confidence 66788888888888888888877754
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.25 E-value=0.063 Score=46.34 Aligned_cols=196 Identities=15% Similarity=0.079 Sum_probs=114.2
Q ss_pred cCCceEEEeecCCCC-----CCchhhhcCCCCcEEEeccCCCCCCCc-----CccchhhhcCCCCCcEEEeecccCCccC
Q 039475 36 QEKLRHLTLMLGLPT-----KFPVSIFDAKKLRSLSLFYDSKGQSAA-----SPVLQGLFDQLTCLRALKIEELWYGDQT 105 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~-----~~~~~~~~l~~Lr~L~l~~~~~~~~~~-----~~~~~~~~~~l~~Lr~L~L~~~~~~~~i 105 (286)
...+..+.++.|.+. .+...+.+-++||...+++.......- -.++...+-++++|+..+|+. |.+
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD----NAf 104 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD----NAF 104 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc----ccc
Confidence 456778888888773 234456677888888887765432100 001333456899999999999 665
Q ss_pred c-ccCc----cccCCCCCcEEeccc--ccccCCC-CCCCCCccc--ccccccccCCCEEEecCCCccccccc-----ccc
Q 039475 106 I-EIPK----GLENLIHLRYLKLSA--VEELSET-CYCPSLKRL--PQGRGKLINLRHLIFDKDYLAYMANG-----FER 170 (286)
Q Consensus 106 ~-~lP~----~i~~L~~Lr~L~L~~--~~~LP~~-~~~~~l~~L--P~~i~~L~~L~~L~l~~~~~~~lP~~-----i~~ 170 (286)
. ..|+ -|++-+.|..|.+++ ++.+-.. -+ .-+..| -.-..+-+.|+...+..|++..-|.. +..
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig-kal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s 183 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG-KALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHH-HHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence 4 4444 556778899999986 2221111 00 000001 01233446799999988888766643 333
Q ss_pred cccccccccccccccCCccCCCCCCcccc--cCcccccceeEEcccCCccc----chhhhhhcCCCCCCceEEEEeCCCC
Q 039475 171 LTSLRTLSGFTVARVGGKYSSEACNLEGL--RNLNHLRQFLRICGLGNLQM----RLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 171 L~~L~~L~~~~~~~~~~~~~~~~~~~~~l--~~L~~L~~~L~i~~l~~~~~----~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
-.+|+++.+..++.. +..+..+ -.+...+ +|.+.++....- +..+...+...+.|+.|++......
T Consensus 184 h~~lk~vki~qNgIr-------pegv~~L~~~gl~y~~-~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 184 HENLKEVKIQQNGIR-------PEGVTMLAFLGLFYSH-SLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred hcCceeEEeeecCcC-------cchhHHHHHHHHHHhC-cceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 457888888777655 3332222 2223333 444444433322 4556667888888999988655443
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.89 E-value=0.009 Score=50.24 Aligned_cols=61 Identities=13% Similarity=-0.028 Sum_probs=33.5
Q ss_pred hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecc
Q 039475 54 VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLS 124 (286)
Q Consensus 54 ~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~ 124 (286)
..+..+..|..|+++.+.... +|..++....++.+++.. |+....|.+++.++|++|+++.
T Consensus 59 ~n~s~~t~~~rl~~sknq~~~------~~~d~~q~~e~~~~~~~~----n~~~~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 59 KNFSILTRLVRLDLSKNQIKF------LPKDAKQQRETVNAASHK----NNHSQQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred cchHHHHHHHHHhccHhhHhh------ChhhHHHHHHHHHHHhhc----cchhhCCccccccCCcchhhhc
Confidence 344445555555555443221 455555555556666655 5566666666666666666654
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.64 E-value=0.33 Score=25.71 Aligned_cols=19 Identities=32% Similarity=0.594 Sum_probs=12.6
Q ss_pred CCCcEEEeecccCCccCcccCcc
Q 039475 89 TCLRALKIEELWYGDQTIEIPKG 111 (286)
Q Consensus 89 ~~Lr~L~L~~~~~~~~i~~lP~~ 111 (286)
+.|++|+|++ |.+..+|..
T Consensus 2 ~~L~~L~L~~----N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSN----NQLSSLPPG 20 (26)
T ss_pred CCCCEEECCC----CcCCcCCHH
Confidence 4567777777 667666654
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.64 E-value=0.33 Score=25.71 Aligned_cols=19 Identities=32% Similarity=0.594 Sum_probs=12.6
Q ss_pred CCCcEEEeecccCCccCcccCcc
Q 039475 89 TCLRALKIEELWYGDQTIEIPKG 111 (286)
Q Consensus 89 ~~Lr~L~L~~~~~~~~i~~lP~~ 111 (286)
+.|++|+|++ |.+..+|..
T Consensus 2 ~~L~~L~L~~----N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSN----NQLSSLPPG 20 (26)
T ss_pred CCCCEEECCC----CcCCcCCHH
Confidence 4567777777 667666654
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=85.43 E-value=1.7 Score=32.48 Aligned_cols=83 Identities=14% Similarity=0.238 Sum_probs=49.5
Q ss_pred chhhhcCCCCCcEEEeecccCCccCcccCc-cccCCCCCcEEecccccccCCCCCCCCCccccc-ccccccCCCEEEecC
Q 039475 81 LQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLENLIHLRYLKLSAVEELSETCYCPSLKRLPQ-GRGKLINLRHLIFDK 158 (286)
Q Consensus 81 ~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~-~i~~L~~L~~L~l~~ 158 (286)
-...|.++..|+.+.+.. . +..+++ .+.++.+|+.+.+.. .+..++. .+.+..+|+.+.+..
T Consensus 4 ~~~~F~~~~~l~~i~~~~----~-~~~I~~~~F~~~~~l~~i~~~~-----------~~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN----T-IKKIGENAFSNCTSLKSINFPN-----------NLTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp -TTTTTT-TT--EEEETS----T---EE-TTTTTT-TT-SEEEESS-----------TTSCE-TTTTTT-TT-EEEEETS
T ss_pred CHHHHhCCCCCCEEEECC----C-eeEeChhhcccccccccccccc-----------cccccceeeeecccccccccccc
Confidence 345688888999999865 3 555654 567888899999974 4777765 456776899999976
Q ss_pred CCccccccc-ccccccccccccc
Q 039475 159 DYLAYMANG-FERLTSLRTLSGF 180 (286)
Q Consensus 159 ~~~~~lP~~-i~~L~~L~~L~~~ 180 (286)
.+..++.. +..+++|+.+.+.
T Consensus 68 -~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 68 -NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp -TT-EE-TTTTTT-TTECEEEET
T ss_pred -cccccccccccccccccccccC
Confidence 56666654 7778888888763
No 77
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=73.59 E-value=2.2 Score=39.67 Aligned_cols=102 Identities=20% Similarity=0.136 Sum_probs=57.4
Q ss_pred CCCCcc--cccccccccCCCEEEecCC--Cccccc----ccccccccccccccccccccCCccCCCCCCcccccC-cccc
Q 039475 135 CPSLKR--LPQGRGKLINLRHLIFDKD--YLAYMA----NGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRN-LNHL 205 (286)
Q Consensus 135 ~~~l~~--LP~~i~~L~~L~~L~l~~~--~~~~lP----~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~-L~~L 205 (286)
|..+.. +-........|+.|+++++ .....+ .-...+.+|+.|.+..+... ....+..+.. .+.|
T Consensus 198 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i------sd~~l~~l~~~c~~L 271 (482)
T KOG1947|consen 198 CSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV------TDIGLSALASRCPNL 271 (482)
T ss_pred cccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc------CchhHHHHHhhCCCc
Confidence 555554 3345567788888888752 111111 12334467777777666532 1344444333 4456
Q ss_pred cceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 206 RQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 206 ~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
+ .|.+..+..+. .+.+......+++|++|+|++....
T Consensus 272 ~-~L~l~~c~~lt-~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 272 E-TLSLSNCSNLT-DEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred c-eEccCCCCccc-hhHHHHHHHhcCcccEEeeecCccc
Confidence 5 66654443322 3455566667788999999977664
No 78
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=71.43 E-value=3.1 Score=22.25 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=12.8
Q ss_pred ccCCCEEEecCCCcccc
Q 039475 148 LINLRHLIFDKDYLAYM 164 (286)
Q Consensus 148 L~~L~~L~l~~~~~~~l 164 (286)
+++|+.|+++.|.+..+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 46788888888877544
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.55 E-value=0.74 Score=38.08 Aligned_cols=86 Identities=23% Similarity=0.142 Sum_probs=41.4
Q ss_pred CCCEEEecCCCccccc-ccccccccccccccccccccCCccCCCCCCcccccCc-ccccceeEEcccCCcccchhhhhhc
Q 039475 150 NLRHLIFDKDYLAYMA-NGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNL-NHLRQFLRICGLGNLQMRLKINAHL 227 (286)
Q Consensus 150 ~L~~L~l~~~~~~~lP-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~~~L~i~~l~~~~~~~~~~~~l 227 (286)
.++.++.+++.+...- ..+.+++.++.|.+..+... ..+.+..++++ .+|+ .|.+.++..+ .+...+.+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~------dD~~L~~l~~~~~~L~-~L~lsgC~rI--T~~GL~~L 172 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYF------DDWCLERLGGLAPSLQ-DLDLSGCPRI--TDGGLACL 172 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccch------hhHHHHHhcccccchh-eeeccCCCee--chhHHHHH
Confidence 3455555554443221 22444444445555444433 23344444432 3444 5666544444 33444566
Q ss_pred CCCCCCceEEEEeCCCC
Q 039475 228 EKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 228 ~~l~~L~~L~L~~~~~~ 244 (286)
.++++|+.|.|..=...
T Consensus 173 ~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 173 LKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HHhhhhHHHHhcCchhh
Confidence 67777777776554433
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=63.16 E-value=4.5 Score=21.66 Aligned_cols=17 Identities=24% Similarity=0.601 Sum_probs=11.3
Q ss_pred CCcEEEeecccCCccCcccCc
Q 039475 90 CLRALKIEELWYGDQTIEIPK 110 (286)
Q Consensus 90 ~Lr~L~L~~~~~~~~i~~lP~ 110 (286)
.|++|++++ |++..+|+
T Consensus 3 ~L~~L~vs~----N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSN----NQLTSLPE 19 (26)
T ss_pred ccceeecCC----CccccCcc
Confidence 466677777 66666664
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=55.16 E-value=7.7 Score=19.80 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=8.6
Q ss_pred cCCCEEEecCCCcc
Q 039475 149 INLRHLIFDKDYLA 162 (286)
Q Consensus 149 ~~L~~L~l~~~~~~ 162 (286)
++|++|++++|.+.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 57788888877654
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=50.08 E-value=22 Score=19.00 Aligned_cols=15 Identities=33% Similarity=0.290 Sum_probs=13.2
Q ss_pred CCCceEEEEeCCCCC
Q 039475 231 KNLVHLTLDFDKGED 245 (286)
Q Consensus 231 ~~L~~L~L~~~~~~~ 245 (286)
++|+.|+|++|..++
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 579999999999984
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.59 E-value=18 Score=30.05 Aligned_cols=73 Identities=15% Similarity=0.089 Sum_probs=40.0
Q ss_pred cccccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcC-CCCCCceEEEEeC
Q 039475 163 YMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLE-KKKNLVHLTLDFD 241 (286)
Q Consensus 163 ~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~-~l~~L~~L~L~~~ 241 (286)
++|.....=..++.++..+.... ...+..+.+++.++ +|...+++.+.+ .-..-++ -..+|+.|+|+.+
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~-------~eGle~L~~l~~i~-~l~l~~ck~~dD--~~L~~l~~~~~~L~~L~lsgC 161 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIM-------YEGLEHLRDLRSIK-SLSLANCKYFDD--WCLERLGGLAPSLQDLDLSGC 161 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHH-------HHHHHHHhccchhh-hheeccccchhh--HHHHHhcccccchheeeccCC
Confidence 44433222234555555544433 34556677777777 677776655544 1112222 3579999999944
Q ss_pred -CCCC
Q 039475 242 -KGED 245 (286)
Q Consensus 242 -~~~~ 245 (286)
+.++
T Consensus 162 ~rIT~ 166 (221)
T KOG3864|consen 162 PRITD 166 (221)
T ss_pred Ceech
Confidence 4553
No 84
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=26.16 E-value=46 Score=30.75 Aligned_cols=14 Identities=21% Similarity=0.150 Sum_probs=9.2
Q ss_pred ccccCCCEEEecCC
Q 039475 146 GKLINLRHLIFDKD 159 (286)
Q Consensus 146 ~~L~~L~~L~l~~~ 159 (286)
.+.++|++|++.++
T Consensus 292 ~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 292 ERCPSLRELDLSGC 305 (482)
T ss_pred HhcCcccEEeeecC
Confidence 45566777777764
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=24.52 E-value=64 Score=16.64 Aligned_cols=8 Identities=63% Similarity=0.746 Sum_probs=3.5
Q ss_pred CCcEEecc
Q 039475 117 HLRYLKLS 124 (286)
Q Consensus 117 ~Lr~L~L~ 124 (286)
+|++|+|+
T Consensus 3 ~L~~L~l~ 10 (26)
T smart00367 3 NLRELDLS 10 (26)
T ss_pred CCCEeCCC
Confidence 34444444
No 86
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=23.54 E-value=53 Score=30.53 Aligned_cols=62 Identities=23% Similarity=0.144 Sum_probs=30.0
Q ss_pred hcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCcc-CcccC-ccc-cCCCCCcEEeccc
Q 039475 57 FDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQ-TIEIP-KGL-ENLIHLRYLKLSA 125 (286)
Q Consensus 57 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~-i~~lP-~~i-~~L~~Lr~L~L~~ 125 (286)
.....|++|...+....... ++-..-.+..+|++|.+.+ +. +...- ..+ -+..+|+.+++..
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~---~l~aLg~~~~~L~~l~l~~----c~~fsd~~ft~l~rn~~~Le~l~~e~ 355 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDE---VLWALGQHCHNLQVLELSG----CQQFSDRGFTMLGRNCPHLERLDLEE 355 (483)
T ss_pred hhhhHhhhhcccCCCCCchH---HHHHHhcCCCceEEEeccc----cchhhhhhhhhhhcCChhhhhhcccc
Confidence 34566666666665432211 1223334566677777776 43 22111 011 2455666666654
No 87
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=22.92 E-value=49 Score=30.77 Aligned_cols=67 Identities=21% Similarity=0.116 Sum_probs=37.1
Q ss_pred ccccccccccccccccCCccCCCCCCcccccCc-ccccceeEEcccCCccc-chhhhhhcCCCCCCceEEEEeCCC
Q 039475 170 RLTSLRTLSGFTVARVGGKYSSEACNLEGLRNL-NHLRQFLRICGLGNLQM-RLKINAHLEKKKNLVHLTLDFDKG 243 (286)
Q Consensus 170 ~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~~~L~i~~l~~~~~-~~~~~~~l~~l~~L~~L~L~~~~~ 243 (286)
+.+.||.|.+..+... ....+..+..- ..+. .+.+..+++++. .++....+...++|+.+++-.-+.
T Consensus 370 ~C~~lr~lslshce~i------tD~gi~~l~~~~c~~~-~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELI------TDEGIRHLSSSSCSLE-GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred CCchhccCChhhhhhh------hhhhhhhhhhcccccc-ccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 4567777777655432 12222222221 1122 345555556665 667777788888899887765443
Done!