Query 039475
Match_columns 286
No_of_seqs 246 out of 2026
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 17:09:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039475.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039475hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.8 1.2E-20 4.1E-25 167.5 14.1 188 37-245 81-291 (328)
2 1ogq_A PGIP-2, polygalacturona 99.8 6.8E-18 2.3E-22 148.7 13.0 186 37-244 50-257 (313)
3 4fcg_A Uncharacterized protein 99.7 2.4E-17 8.3E-22 146.2 13.9 188 36-244 103-314 (328)
4 1ozn_A Reticulon 4 receptor; N 99.7 6E-17 2E-21 140.4 13.3 190 35-244 30-238 (285)
5 3zyi_A Leucine-rich repeat-con 99.7 4E-17 1.4E-21 150.7 12.0 189 35-244 73-279 (452)
6 3zyj_A Leucine-rich repeat-con 99.7 4.3E-17 1.5E-21 150.0 12.0 189 35-244 62-268 (440)
7 1ogq_A PGIP-2, polygalacturona 99.7 3.9E-17 1.3E-21 143.9 10.5 187 36-244 75-281 (313)
8 2z66_A Variable lymphocyte rec 99.7 5.8E-17 2E-21 141.8 10.1 192 35-244 26-236 (306)
9 2o6q_A Variable lymphocyte rec 99.7 1.2E-15 4.1E-20 131.3 15.4 181 35-245 35-219 (270)
10 1xku_A Decorin; proteoglycan, 99.7 6.3E-16 2.2E-20 136.7 13.8 79 36-125 51-130 (330)
11 1p9a_G Platelet glycoprotein I 99.7 5.7E-16 1.9E-20 135.0 13.0 178 35-245 29-209 (290)
12 2o6q_A Variable lymphocyte rec 99.7 7.7E-16 2.6E-20 132.6 12.9 177 37-245 16-195 (270)
13 2z80_A TOLL-like receptor 2, v 99.7 3E-16 1E-20 140.2 10.5 129 35-182 50-184 (353)
14 3vq2_A TLR4, TOLL-like recepto 99.7 5E-16 1.7E-20 148.1 12.0 132 35-185 30-166 (606)
15 1ozn_A Reticulon 4 receptor; N 99.6 1.3E-15 4.4E-20 131.9 13.4 163 36-215 55-236 (285)
16 3rgz_A Protein brassinosteroid 99.6 6.8E-16 2.3E-20 151.6 13.0 90 144-244 627-717 (768)
17 2z62_A TOLL-like receptor 4, v 99.6 3.2E-16 1.1E-20 135.2 9.3 190 35-245 26-238 (276)
18 3rgz_A Protein brassinosteroid 99.6 1.8E-15 6.1E-20 148.6 15.5 178 37-244 442-693 (768)
19 1h6u_A Internalin H; cell adhe 99.6 2.9E-15 9.8E-20 131.6 15.1 122 36-182 40-161 (308)
20 2id5_A Lingo-1, leucine rich r 99.6 2.7E-15 9.1E-20 139.2 15.5 163 35-214 30-210 (477)
21 3o6n_A APL1; leucine-rich repe 99.6 1E-15 3.5E-20 138.4 12.2 128 36-182 44-175 (390)
22 4eco_A Uncharacterized protein 99.6 1.8E-16 6.2E-21 152.5 6.4 190 37-244 81-390 (636)
23 3m19_A Variable lymphocyte rec 99.6 4.4E-15 1.5E-19 126.4 14.2 174 39-244 16-192 (251)
24 3rfs_A Internalin B, repeat mo 99.6 6.2E-15 2.1E-19 127.1 15.3 177 36-245 40-219 (272)
25 2ft3_A Biglycan; proteoglycan, 99.6 2.1E-15 7.2E-20 133.5 11.9 78 37-125 54-132 (332)
26 1p9a_G Platelet glycoprotein I 99.6 3.3E-15 1.1E-19 130.2 12.9 176 36-244 9-185 (290)
27 2z7x_B TOLL-like receptor 1, v 99.6 6.3E-15 2.2E-19 138.0 14.3 175 37-242 21-201 (520)
28 4eco_A Uncharacterized protein 99.6 1.9E-15 6.3E-20 145.5 9.9 138 36-183 205-388 (636)
29 2z66_A Variable lymphocyte rec 99.6 2.1E-15 7.2E-20 131.9 8.7 184 40-244 10-212 (306)
30 1h6u_A Internalin H; cell adhe 99.6 3.8E-14 1.3E-18 124.4 16.7 170 36-245 62-231 (308)
31 2z81_A CD282 antigen, TOLL-lik 99.6 7.2E-15 2.5E-19 138.4 12.5 179 35-244 24-209 (549)
32 4fmz_A Internalin; leucine ric 99.6 4E-14 1.4E-18 125.7 16.6 132 36-182 43-187 (347)
33 2z80_A TOLL-like receptor 2, v 99.6 1.1E-14 3.8E-19 130.0 13.0 172 42-244 36-211 (353)
34 3oja_B Anopheles plasmodium-re 99.6 4.7E-15 1.6E-19 141.6 11.2 127 37-182 51-181 (597)
35 3zyj_A Leucine-rich repeat-con 99.6 1.5E-14 5.3E-19 132.9 14.2 189 36-245 87-293 (440)
36 3o6n_A APL1; leucine-rich repe 99.6 5.7E-15 1.9E-19 133.5 11.1 80 37-125 69-150 (390)
37 3oja_B Anopheles plasmodium-re 99.6 5.6E-15 1.9E-19 141.1 11.0 80 37-125 75-156 (597)
38 3v47_A TOLL-like receptor 5B a 99.6 1.2E-14 4.3E-19 133.6 12.9 185 34-244 27-225 (455)
39 1xku_A Decorin; proteoglycan, 99.6 8.7E-15 3E-19 129.3 11.3 136 38-184 32-183 (330)
40 3zyi_A Leucine-rich repeat-con 99.6 1.8E-14 6.1E-19 132.9 13.9 189 36-245 98-304 (452)
41 3m19_A Variable lymphocyte rec 99.6 2.9E-14 9.9E-19 121.3 14.0 153 35-214 33-189 (251)
42 3t6q_A CD180 antigen; protein- 99.6 1.1E-14 3.6E-19 138.9 12.4 79 38-125 279-359 (606)
43 3t6q_A CD180 antigen; protein- 99.6 7.4E-15 2.5E-19 140.0 11.2 140 34-182 30-189 (606)
44 2id5_A Lingo-1, leucine rich r 99.6 7.3E-15 2.5E-19 136.2 10.7 188 37-244 80-309 (477)
45 1ziw_A TOLL-like receptor 3; i 99.6 1.6E-14 5.4E-19 139.6 13.2 140 35-183 23-182 (680)
46 4ecn_A Leucine-rich repeat pro 99.6 1.3E-14 4.6E-19 143.5 12.8 82 38-130 549-635 (876)
47 1h6t_A Internalin B; cell adhe 99.6 9E-14 3.1E-18 121.1 16.5 170 36-245 45-214 (291)
48 4ecn_A Leucine-rich repeat pro 99.6 1E-14 3.4E-19 144.4 11.7 138 36-183 447-630 (876)
49 2z7x_B TOLL-like receptor 1, v 99.6 4.5E-14 1.5E-18 132.2 15.6 78 36-125 44-124 (520)
50 2z81_A CD282 antigen, TOLL-lik 99.6 1.6E-14 5.3E-19 136.1 12.4 171 43-244 11-185 (549)
51 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 3.8E-14 1.3E-18 134.2 14.1 124 39-185 33-159 (562)
52 2z63_A TOLL-like receptor 4, v 99.5 3.5E-14 1.2E-18 134.1 13.7 179 35-244 26-213 (570)
53 2xwt_C Thyrotropin receptor; s 99.5 3.3E-14 1.1E-18 119.9 11.7 181 35-245 29-219 (239)
54 3v47_A TOLL-like receptor 5B a 99.5 2.3E-14 7.8E-19 131.8 11.2 80 37-125 79-163 (455)
55 4fmz_A Internalin; leucine ric 99.5 2.3E-13 8E-18 120.7 17.4 135 37-182 88-253 (347)
56 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 8.5E-14 2.9E-18 131.8 15.2 107 35-162 50-159 (562)
57 1o6v_A Internalin A; bacterial 99.5 7.4E-14 2.5E-18 129.3 14.5 120 36-180 45-164 (466)
58 2z62_A TOLL-like receptor 4, v 99.5 4.9E-14 1.7E-18 121.4 11.9 161 37-214 52-234 (276)
59 1wwl_A Monocyte differentiatio 99.5 1.4E-14 4.9E-19 127.2 8.5 177 36-245 94-288 (312)
60 4ezg_A Putative uncharacterize 99.5 1.7E-13 5.7E-18 112.3 14.3 151 57-244 41-194 (197)
61 3e6j_A Variable lymphocyte rec 99.5 9.7E-14 3.3E-18 116.6 13.1 121 42-183 24-146 (229)
62 3e6j_A Variable lymphocyte rec 99.5 9E-14 3.1E-18 116.8 12.4 132 35-185 38-172 (229)
63 3rfs_A Internalin B, repeat mo 99.5 1.7E-13 5.8E-18 118.0 14.3 151 36-214 62-215 (272)
64 4g8a_A TOLL-like receptor 4; l 99.5 3E-14 1E-18 135.7 10.4 132 34-184 49-185 (635)
65 3bz5_A Internalin-J, INLJ; leu 99.5 2E-13 7E-18 126.3 15.4 118 36-182 41-158 (457)
66 1o6v_A Internalin A; bacterial 99.5 3.4E-13 1.2E-17 124.8 16.9 131 36-181 67-208 (466)
67 2v9t_B SLIT homolog 2 protein 99.5 1E-13 3.6E-18 115.7 11.8 104 60-182 32-138 (220)
68 2ft3_A Biglycan; proteoglycan, 99.5 7E-14 2.4E-18 123.7 11.1 134 38-183 34-183 (332)
69 1h6t_A Internalin B; cell adhe 99.5 1.1E-13 3.8E-18 120.5 12.2 150 56-244 42-191 (291)
70 3j0a_A TOLL-like receptor 5; m 99.5 5.8E-14 2E-18 139.2 11.6 181 35-244 22-217 (844)
71 3vq2_A TLR4, TOLL-like recepto 99.5 1.6E-14 5.5E-19 137.6 7.0 190 36-244 327-534 (606)
72 2ast_B S-phase kinase-associat 99.5 3.3E-15 1.1E-19 132.1 1.9 187 38-241 71-282 (336)
73 2o6s_A Variable lymphocyte rec 99.5 7.6E-14 2.6E-18 115.2 9.9 127 37-182 28-158 (208)
74 2ell_A Acidic leucine-rich nuc 99.5 8.3E-14 2.8E-18 111.1 9.7 129 35-184 22-159 (168)
75 4ezg_A Putative uncharacterize 99.5 1.3E-13 4.5E-18 112.9 11.0 145 36-213 43-190 (197)
76 3oja_A Leucine-rich immune mol 99.5 4.7E-14 1.6E-18 131.6 8.6 179 37-244 34-227 (487)
77 2v9t_B SLIT homolog 2 protein 99.5 1.6E-13 5.5E-18 114.6 10.8 132 35-185 30-165 (220)
78 1xeu_A Internalin C; cellular 99.5 3.1E-13 1.1E-17 116.0 12.7 160 44-244 26-185 (263)
79 2je0_A Acidic leucine-rich nuc 99.5 7.9E-14 2.7E-18 109.0 8.0 124 36-180 16-148 (149)
80 1m9s_A Internalin B; cell inva 99.5 3.5E-13 1.2E-17 128.8 14.0 170 36-245 42-211 (605)
81 3o53_A Protein LRIM1, AGAP0063 99.5 5.3E-14 1.8E-18 123.8 7.7 132 37-183 34-180 (317)
82 3oja_A Leucine-rich immune mol 99.5 1E-13 3.5E-18 129.2 10.0 177 43-244 13-204 (487)
83 4b8c_D Glucose-repressible alc 99.5 1.4E-13 4.6E-18 134.4 10.4 112 53-184 217-328 (727)
84 1ziw_A TOLL-like receptor 3; i 99.5 3.5E-13 1.2E-17 130.1 13.1 172 41-244 8-184 (680)
85 2v70_A SLIT-2, SLIT homolog 2 99.5 5.2E-13 1.8E-17 111.5 12.4 122 41-182 15-139 (220)
86 4g8a_A TOLL-like receptor 4; l 99.5 5.1E-13 1.7E-17 127.2 14.0 138 49-214 43-183 (635)
87 2v70_A SLIT-2, SLIT homolog 2 99.5 3.4E-13 1.1E-17 112.6 11.1 132 35-185 30-166 (220)
88 2z63_A TOLL-like receptor 4, v 99.5 1E-13 3.6E-18 130.8 8.7 171 57-245 344-532 (570)
89 2xwt_C Thyrotropin receptor; s 99.4 3.3E-13 1.1E-17 113.8 10.4 173 36-241 54-236 (239)
90 2o6s_A Variable lymphocyte rec 99.4 8.2E-13 2.8E-17 109.0 12.3 166 40-244 10-178 (208)
91 3bz5_A Internalin-J, INLJ; leu 99.4 4.9E-13 1.7E-17 123.7 12.0 149 53-244 35-183 (457)
92 4glp_A Monocyte differentiatio 99.4 2.6E-13 9E-18 118.9 9.4 180 38-244 92-285 (310)
93 4ay9_X Follicle-stimulating ho 99.4 5.7E-13 1.9E-17 118.9 11.7 90 35-132 28-122 (350)
94 3j0a_A TOLL-like receptor 5; m 99.4 5.4E-13 1.9E-17 132.2 12.0 174 40-245 7-188 (844)
95 2ast_B S-phase kinase-associat 99.4 5.7E-14 1.9E-18 124.1 4.3 187 37-245 93-307 (336)
96 3o53_A Protein LRIM1, AGAP0063 99.4 2E-13 6.8E-18 120.2 7.4 118 56-185 30-157 (317)
97 1m9s_A Internalin B; cell inva 99.4 5E-13 1.7E-17 127.7 10.7 150 56-244 39-188 (605)
98 1xeu_A Internalin C; cellular 99.4 2.4E-12 8.1E-17 110.4 13.9 142 36-213 40-181 (263)
99 1a9n_A U2A', U2A'; complex (nu 99.4 7.8E-13 2.7E-17 106.3 9.4 125 37-182 19-150 (176)
100 1wwl_A Monocyte differentiatio 99.4 7.5E-13 2.6E-17 116.2 9.8 176 35-245 119-310 (312)
101 4b8c_D Glucose-repressible alc 99.4 4.7E-13 1.6E-17 130.6 9.0 110 81-213 216-325 (727)
102 2je0_A Acidic leucine-rich nuc 99.4 2.7E-13 9.3E-18 105.9 5.5 109 58-185 15-126 (149)
103 2ell_A Acidic leucine-rich nuc 99.4 6.9E-13 2.4E-17 105.7 7.8 107 58-183 22-131 (168)
104 2xot_A Amphoterin-induced prot 99.4 1.1E-12 3.6E-17 117.7 9.9 125 38-181 40-172 (361)
105 2ca6_A RAN GTPase-activating p 99.4 2.3E-13 7.7E-18 122.9 4.6 83 37-125 32-131 (386)
106 2wfh_A SLIT homolog 2 protein 99.4 4.4E-12 1.5E-16 103.7 11.1 123 40-184 13-138 (193)
107 1w8a_A SLIT protein; signaling 99.3 4.1E-12 1.4E-16 103.7 10.2 126 39-185 10-139 (192)
108 4glp_A Monocyte differentiatio 99.3 2.8E-12 9.7E-17 112.3 9.6 175 36-245 116-308 (310)
109 2xot_A Amphoterin-induced prot 99.3 2.5E-12 8.7E-17 115.2 9.5 175 39-245 20-203 (361)
110 3goz_A Leucine-rich repeat-con 99.3 2.1E-12 7.1E-17 115.7 8.5 217 36-284 21-291 (362)
111 2ca6_A RAN GTPase-activating p 99.3 5.7E-13 2E-17 120.2 4.9 186 50-244 22-257 (386)
112 1dce_A Protein (RAB geranylger 99.3 4.8E-12 1.7E-16 120.0 10.9 103 61-185 442-546 (567)
113 3g06_A SSPH2 (leucine-rich rep 99.3 2.7E-11 9.4E-16 115.9 15.8 72 35-125 59-130 (622)
114 1jl5_A Outer protein YOPM; leu 99.3 2.1E-11 7.1E-16 112.7 14.3 148 35-213 89-246 (454)
115 2o6r_A Variable lymphocyte rec 99.3 1.4E-11 4.8E-16 98.9 11.3 125 39-184 9-136 (177)
116 1a9n_A U2A', U2A'; complex (nu 99.3 3.7E-12 1.3E-16 102.4 7.5 108 55-183 14-124 (176)
117 3g06_A SSPH2 (leucine-rich rep 99.3 3E-11 1E-15 115.7 14.9 113 38-171 41-163 (622)
118 1dce_A Protein (RAB geranylger 99.3 7.3E-12 2.5E-16 118.8 10.1 156 53-238 402-567 (567)
119 3cvr_A Invasion plasmid antige 99.3 3.6E-11 1.2E-15 113.9 13.4 169 38-244 60-243 (571)
120 2r9u_A Variable lymphocyte rec 99.3 2E-11 6.9E-16 98.1 9.7 113 39-172 14-128 (174)
121 3cvr_A Invasion plasmid antige 99.3 2.6E-11 8.9E-16 114.9 11.7 103 60-183 59-171 (571)
122 1ds9_A Outer arm dynein; leuci 99.3 8.4E-14 2.9E-18 114.3 -5.0 134 81-237 40-180 (198)
123 2wfh_A SLIT homolog 2 protein 99.2 5.1E-11 1.7E-15 97.3 11.5 109 35-162 29-139 (193)
124 1jl5_A Outer protein YOPM; leu 99.2 1.1E-10 3.9E-15 107.7 14.2 128 37-183 131-268 (454)
125 3goz_A Leucine-rich repeat-con 99.2 2.6E-11 8.9E-16 108.5 8.9 195 38-245 52-298 (362)
126 1w8a_A SLIT protein; signaling 99.2 6.7E-11 2.3E-15 96.4 10.6 109 35-162 27-139 (192)
127 1z7x_W Ribonuclease inhibitor; 99.2 2.2E-12 7.6E-17 118.6 1.9 36 147-182 254-294 (461)
128 1z7x_W Ribonuclease inhibitor; 99.2 2.3E-12 7.7E-17 118.6 0.8 88 149-244 313-411 (461)
129 1ds9_A Outer arm dynein; leuci 99.2 2.3E-12 7.9E-17 105.6 -0.3 126 38-185 24-153 (198)
130 3g39_A Variable lymphocyte rec 99.2 1.4E-10 4.7E-15 92.8 9.5 107 39-166 11-119 (170)
131 2o6r_A Variable lymphocyte rec 99.1 2.6E-10 9E-15 91.4 10.2 113 35-166 26-141 (177)
132 2r9u_A Variable lymphocyte rec 99.1 2.1E-10 7.2E-15 92.1 9.0 101 63-185 15-118 (174)
133 3g39_A Variable lymphocyte rec 99.1 3.7E-10 1.3E-14 90.2 8.7 102 62-185 11-115 (170)
134 3ogk_B Coronatine-insensitive 99.0 2.5E-10 8.7E-15 108.1 5.8 173 57-244 189-391 (592)
135 3ogk_B Coronatine-insensitive 99.0 1.9E-10 6.6E-15 108.9 4.6 42 140-181 211-252 (592)
136 4ay9_X Follicle-stimulating ho 99.0 4.7E-09 1.6E-13 93.3 11.7 138 36-182 53-212 (350)
137 2ifg_A High affinity nerve gro 98.8 1.1E-08 3.8E-13 90.6 9.9 104 41-164 12-118 (347)
138 2ifg_A High affinity nerve gro 98.8 2E-08 6.8E-13 88.9 9.3 99 64-184 12-115 (347)
139 2p1m_B Transport inhibitor res 98.7 1.6E-09 5.3E-14 102.6 0.3 41 142-182 282-324 (594)
140 2p1m_B Transport inhibitor res 98.7 3.4E-09 1.2E-13 100.3 2.0 83 36-125 104-193 (594)
141 3un9_A NLR family member X1; l 98.5 9.3E-09 3.2E-13 92.4 -0.0 168 59-245 71-253 (372)
142 3sb4_A Hypothetical leucine ri 98.5 2.9E-07 9.8E-12 81.0 8.6 190 38-244 26-310 (329)
143 2ra8_A Uncharacterized protein 98.3 9.1E-07 3.1E-11 79.1 6.4 186 37-244 107-320 (362)
144 2ra8_A Uncharacterized protein 98.2 1.7E-06 5.9E-11 77.3 5.5 187 59-284 106-314 (362)
145 3sb4_A Hypothetical leucine ri 98.1 4.1E-06 1.4E-10 73.5 7.2 33 88-124 225-258 (329)
146 3un9_A NLR family member X1; l 98.1 2.7E-07 9.3E-12 82.8 -0.4 161 88-284 71-246 (372)
147 4fdw_A Leucine rich hypothetic 98.1 3E-05 1E-09 70.2 12.8 161 60-244 157-358 (401)
148 4fdw_A Leucine rich hypothetic 97.9 7.9E-05 2.7E-09 67.4 12.2 98 54-165 130-241 (401)
149 3rw6_A Nuclear RNA export fact 97.7 2.6E-05 8.8E-10 66.6 4.8 82 86-182 167-261 (267)
150 1io0_A Tropomodulin; LRR prote 97.7 1.6E-05 5.4E-10 64.0 2.8 116 53-183 29-162 (185)
151 3rw6_A Nuclear RNA export fact 97.5 0.0001 3.5E-09 62.8 5.4 82 57-156 167-258 (267)
152 1io0_A Tropomodulin; LRR prote 97.4 7.6E-05 2.6E-09 59.9 2.8 112 36-162 35-164 (185)
153 3e4g_A ATP synthase subunit S, 97.1 0.00027 9.2E-09 56.3 3.7 85 150-243 62-151 (176)
154 3e4g_A ATP synthase subunit S, 96.8 0.00068 2.3E-08 53.9 3.1 89 81-182 53-149 (176)
155 4fs7_A Uncharacterized protein 95.9 0.038 1.3E-06 49.2 9.7 84 138-236 308-393 (394)
156 4fs7_A Uncharacterized protein 95.7 0.057 1.9E-06 48.0 9.9 130 38-180 231-374 (394)
157 4gt6_A Cell surface protein; l 95.6 0.037 1.3E-06 49.3 8.2 69 112-181 284-366 (394)
158 3rfe_A Platelet glycoprotein I 94.9 0.049 1.7E-06 40.7 5.7 53 93-161 12-67 (130)
159 4gt6_A Cell surface protein; l 94.7 0.095 3.3E-06 46.6 8.2 116 111-242 260-389 (394)
160 4h09_A Hypothetical leucine ri 94.1 0.25 8.5E-06 43.4 9.6 104 54-179 211-317 (379)
161 3rfe_A Platelet glycoprotein I 94.1 0.059 2E-06 40.2 4.6 47 136-184 18-67 (130)
162 4h09_A Hypothetical leucine ri 93.5 0.25 8.6E-06 43.4 8.4 120 38-179 218-340 (379)
163 1pgv_A TMD-1, tropomodulin TMD 86.7 0.24 8.2E-06 39.8 1.6 119 112-244 37-170 (197)
164 1pgv_A TMD-1, tropomodulin TMD 81.2 0.99 3.4E-05 36.2 3.0 119 145-284 37-164 (197)
165 2a5y_B CED-4; apoptosis; HET: 61.2 2.2 7.6E-05 39.6 0.8 18 1-18 456-473 (549)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=1.2e-20 Score=167.54 Aligned_cols=188 Identities=19% Similarity=0.206 Sum_probs=154.0
Q ss_pred CCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCC
Q 039475 37 EKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLI 116 (286)
Q Consensus 37 ~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~ 116 (286)
..++.+.+..+.+..+|..+.++++|++|++.+|.... +|..|.++++|++|+|++ |.+..+|..++++.
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~------lp~~~~~l~~L~~L~Ls~----n~l~~lp~~l~~l~ 150 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME------LPDTMQQFAGLETLTLAR----NPLRALPASIASLN 150 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCC------CCSCGGGGTTCSEEEEES----CCCCCCCGGGGGCT
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccc------hhHHHhccCCCCEEECCC----CccccCcHHHhcCc
Confidence 57889999999888889889899999999999998652 788889999999999999 99889999999999
Q ss_pred CCcEEeccc---ccccCCC-CC---------C----------CCCcccccccccccCCCEEEecCCCccccccccccccc
Q 039475 117 HLRYLKLSA---VEELSET-CY---------C----------PSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTS 173 (286)
Q Consensus 117 ~Lr~L~L~~---~~~LP~~-~~---------~----------~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~ 173 (286)
+|++|++++ ++.+|.. +. + +.++.+|..++++++|++|++++|.+..+|..++.+++
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~ 230 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK 230 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTT
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCC
Confidence 999999987 6677764 31 2 34557898999999999999999999999988999999
Q ss_pred ccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475 174 LRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED 245 (286)
Q Consensus 174 L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 245 (286)
|++|++..+... +.....++.+++|+ .|.+.++.. ...++..+..+++|+.|+|+.|....
T Consensus 231 L~~L~Ls~n~~~-------~~~p~~~~~l~~L~-~L~L~~n~~---~~~~p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 231 LEELDLRGCTAL-------RNYPPIFGGRAPLK-RLILKDCSN---LLTLPLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp CCEEECTTCTTC-------CBCCCCTTCCCCCC-EEECTTCTT---CCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred CCEEECcCCcch-------hhhHHHhcCCCCCC-EEECCCCCc---hhhcchhhhcCCCCCEEeCCCCCchh
Confidence 999998876654 44555677788787 788875433 34456678889999999999987763
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.75 E-value=6.8e-18 Score=148.70 Aligned_cols=186 Identities=16% Similarity=0.095 Sum_probs=122.7
Q ss_pred CCceEEEeecCCCC---CCchhhhcCCCCcEEEecc-CCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCc-ccCcc
Q 039475 37 EKLRHLTLMLGLPT---KFPVSIFDAKKLRSLSLFY-DSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTI-EIPKG 111 (286)
Q Consensus 37 ~~~r~ls~~~~~~~---~~~~~~~~l~~Lr~L~l~~-~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~-~lP~~ 111 (286)
.+++++.+..+... .+|..+.++++|++|++.+ +..... +|..|.++++|++|++++ +.+. .+|..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~-----~p~~l~~l~~L~~L~Ls~----n~l~~~~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-----IPPAIAKLTQLHYLYITH----TNVSGAIPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC-----CCGGGGGCTTCSEEEEEE----ECCEEECCGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccccc-----CChhHhcCCCCCEEECcC----CeeCCcCCHH
Confidence 57899999998885 5889999999999999995 655433 788899999999999999 9987 88999
Q ss_pred ccCCCCCcEEeccc--cc-ccCCC-CCC----------CCCc-cccccccccc-CCCEEEecCCCcc-cccccccccccc
Q 039475 112 LENLIHLRYLKLSA--VE-ELSET-CYC----------PSLK-RLPQGRGKLI-NLRHLIFDKDYLA-YMANGFERLTSL 174 (286)
Q Consensus 112 i~~L~~Lr~L~L~~--~~-~LP~~-~~~----------~~l~-~LP~~i~~L~-~L~~L~l~~~~~~-~lP~~i~~L~~L 174 (286)
++++++|++|++++ +. .+|.. ..+ +.+. .+|..++++. +|++|++++|.+. .+|..++.++ |
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L 199 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L 199 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c
Confidence 99999999999997 33 34433 311 1222 3455555555 5555555555554 4444455554 5
Q ss_pred cccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 175 RTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 175 ~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
++|++..+... +.....+..+++|+ .|.+.+..- .. ....+..+++|++|+++.|...
T Consensus 200 ~~L~Ls~N~l~-------~~~~~~~~~l~~L~-~L~L~~N~l---~~-~~~~~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 200 AFVDLSRNMLE-------GDASVLFGSDKNTQ-KIHLAKNSL---AF-DLGKVGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp SEEECCSSEEE-------ECCGGGCCTTSCCS-EEECCSSEE---CC-BGGGCCCCTTCCEEECCSSCCE
T ss_pred cEEECcCCccc-------CcCCHHHhcCCCCC-EEECCCCce---ee-ecCcccccCCCCEEECcCCccc
Confidence 55555544332 22334455555555 555553211 11 1223566777777777777665
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.73 E-value=2.4e-17 Score=146.18 Aligned_cols=188 Identities=18% Similarity=0.170 Sum_probs=151.7
Q ss_pred cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCcc-CcccCccccC
Q 039475 36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQ-TIEIPKGLEN 114 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~-i~~lP~~i~~ 114 (286)
....+++.+..+.+..+|..+..+++|++|++.+|.... +|..|.+++.|++|++++ |. +..+|..++.
T Consensus 103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~------lp~~l~~l~~L~~L~L~~----n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRA------LPASIASLNRLRELSIRA----CPELTELPEPLAS 172 (328)
T ss_dssp GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCC------CCGGGGGCTTCCEEEEEE----ETTCCCCCSCSEE
T ss_pred CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcccc------CcHHHhcCcCCCEEECCC----CCCccccChhHhh
Confidence 457899999988888888888999999999999987652 777888999999999998 66 5577877654
Q ss_pred ---------CCCCcEEeccc--ccccCCC-CC----------CCCCcccccccccccCCCEEEecCCCcc-ccccccccc
Q 039475 115 ---------LIHLRYLKLSA--VEELSET-CY----------CPSLKRLPQGRGKLINLRHLIFDKDYLA-YMANGFERL 171 (286)
Q Consensus 115 ---------L~~Lr~L~L~~--~~~LP~~-~~----------~~~l~~LP~~i~~L~~L~~L~l~~~~~~-~lP~~i~~L 171 (286)
+.+|++|++++ +..+|.. +. .+.+..+|..++++++|++|++++|.+. .+|..++.+
T Consensus 173 ~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l 252 (328)
T 4fcg_A 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252 (328)
T ss_dssp EC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred ccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCC
Confidence 88899999888 7788876 53 2446678999999999999999997666 678889999
Q ss_pred ccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 172 TSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 172 ~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
++|++|++..+... +.....+.++++|+ .|.+.++.. ...++..+.++++|+.+.+..+...
T Consensus 253 ~~L~~L~L~~n~~~-------~~~p~~~~~l~~L~-~L~L~~n~~---~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 253 APLKRLILKDCSNL-------LTLPLDIHRLTQLE-KLDLRGCVN---LSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCCEEECTTCTTC-------CBCCTTGGGCTTCC-EEECTTCTT---CCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCCEEECCCCCch-------hhcchhhhcCCCCC-EEeCCCCCc---hhhccHHHhhccCceEEeCCHHHHH
Confidence 99999999887654 44555677888887 788875433 4567788999999999999877654
No 4
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=6e-17 Score=140.41 Aligned_cols=190 Identities=20% Similarity=0.193 Sum_probs=116.0
Q ss_pred ccCCceEEEeecCCCCCCc-hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCcc-Cccc-Ccc
Q 039475 35 CQEKLRHLTLMLGLPTKFP-VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQ-TIEI-PKG 111 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~-i~~l-P~~ 111 (286)
.+.+++++.+..+.+..++ ..+..+++|++|++.++..... .+..|.+++.|++|++++ +. +..+ |..
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~----n~~l~~~~~~~ 100 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-----DAAAFTGLALLEQLDLSD----NAQLRSVDPAT 100 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-----CTTTTTTCTTCCEEECCS----CTTCCCCCTTT
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-----CHhhcCCccCCCEEeCCC----CCCccccCHHH
Confidence 4668899999988886655 4678899999999999876532 577788999999999999 86 7777 678
Q ss_pred ccCCCCCcEEeccc--ccccCCC--CCC----------CCCccccc-ccccccCCCEEEecCCCccccccc-cccccccc
Q 039475 112 LENLIHLRYLKLSA--VEELSET--CYC----------PSLKRLPQ-GRGKLINLRHLIFDKDYLAYMANG-FERLTSLR 175 (286)
Q Consensus 112 i~~L~~Lr~L~L~~--~~~LP~~--~~~----------~~l~~LP~-~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~ 175 (286)
++.+.+|++|++++ +..++.. ..+ +.+..+|. .++++++|++|++++|.+..+|.. ++.+++|+
T Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180 (285)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence 89999999999987 4333222 111 22333333 245555555555555555555443 55555555
Q ss_pred ccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 176 TLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 176 ~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
+|++..+... ......+..+++|+ .|.+.+..- ....+..+..+++|+.|+++.|...
T Consensus 181 ~L~l~~n~l~-------~~~~~~~~~l~~L~-~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 181 RLLLHQNRVA-------HVHPHAFRDLGRLM-TLYLFANNL---SALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp EEECCSSCCC-------EECTTTTTTCTTCC-EEECCSSCC---SCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred EEECCCCccc-------ccCHhHccCccccc-EeeCCCCcC---CcCCHHHcccCcccCEEeccCCCcc
Confidence 5555544322 12223344444444 454443211 1122233555556666666655544
No 5
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=4e-17 Score=150.71 Aligned_cols=189 Identities=22% Similarity=0.193 Sum_probs=143.0
Q ss_pred ccCCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-c
Q 039475 35 CQEKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-L 112 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i 112 (286)
++.+++.|.+..+.+..+ +..|..+++|+.|++++|..... .+..|.++++|++|+|++ |.+..+|.. +
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~ 143 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI-----EVGAFNGLASLNTLELFD----NWLTVIPSGAF 143 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-----CTTTTTTCTTCCEEECCS----SCCSBCCTTTS
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc-----ChhhccCcccCCEEECCC----CcCCccChhhh
Confidence 456789999999888554 56788999999999999976542 667889999999999999 999988865 8
Q ss_pred cCCCCCcEEeccc--ccccCCC-C------------CCCCCccccc-ccccccCCCEEEecCCCcccccccccccccccc
Q 039475 113 ENLIHLRYLKLSA--VEELSET-C------------YCPSLKRLPQ-GRGKLINLRHLIFDKDYLAYMANGFERLTSLRT 176 (286)
Q Consensus 113 ~~L~~Lr~L~L~~--~~~LP~~-~------------~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~ 176 (286)
+.+.+|++|+|++ +..+|.. + +|+.+..+|. .+.++++|++|++++|.+..+| .+..+++|++
T Consensus 144 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 222 (452)
T 3zyi_A 144 EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEE 222 (452)
T ss_dssp SSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCE
T ss_pred cccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccE
Confidence 8999999999998 7777764 3 3455566665 4788888888888888888876 5788888888
Q ss_pred cccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 177 LSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 177 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
|++..+... ......+.++++|+ .|.+.+..- ....+..+..+++|+.|+|+.|+..
T Consensus 223 L~Ls~N~l~-------~~~~~~~~~l~~L~-~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 223 LEMSGNHFP-------EIRPGSFHGLSSLK-KLWVMNSQV---SLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp EECTTSCCS-------EECGGGGTTCTTCC-EEECTTSCC---CEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EECcCCcCc-------ccCcccccCccCCC-EEEeCCCcC---ceECHHHhcCCCCCCEEECCCCcCC
Confidence 888776544 33345566777777 677764321 2233455777788888888888776
No 6
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.71 E-value=4.3e-17 Score=150.02 Aligned_cols=189 Identities=20% Similarity=0.166 Sum_probs=142.1
Q ss_pred ccCCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cc
Q 039475 35 CQEKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GL 112 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i 112 (286)
++.+++.+.+..+.+..+ +..+.++++|++|++++|..... .+..|.++++|++|+|++ |.+..+|. .+
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~ 132 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI-----EIGAFNGLANLNTLELFD----NRLTTIPNGAF 132 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEE-----CGGGGTTCSSCCEEECCS----SCCSSCCTTTS
T ss_pred CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCcc-----ChhhccCCccCCEEECCC----CcCCeeCHhHh
Confidence 456789999999888655 46788999999999999976532 567889999999999999 99998887 68
Q ss_pred cCCCCCcEEeccc--ccccCCC-C------------CCCCCccccc-ccccccCCCEEEecCCCcccccccccccccccc
Q 039475 113 ENLIHLRYLKLSA--VEELSET-C------------YCPSLKRLPQ-GRGKLINLRHLIFDKDYLAYMANGFERLTSLRT 176 (286)
Q Consensus 113 ~~L~~Lr~L~L~~--~~~LP~~-~------------~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~ 176 (286)
+.+.+|++|+|++ +..+|.. + +++.+..+|. .+.++++|++|++++|.+..+| .+..+++|++
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 211 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDE 211 (440)
T ss_dssp CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCE
T ss_pred hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCE
Confidence 9999999999998 7777765 3 3344555664 5788888999999888888887 4888888888
Q ss_pred cccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 177 LSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 177 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
|++..+... ......+..+++|+ .|.+.+..- ....+..+..+++|+.|+|+.|+.+
T Consensus 212 L~Ls~N~l~-------~~~~~~~~~l~~L~-~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 212 LDLSGNHLS-------AIRPGSFQGLMHLQ-KLWMIQSQI---QVIERNAFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp EECTTSCCC-------EECTTTTTTCTTCC-EEECTTCCC---CEECTTSSTTCTTCCEEECTTSCCC
T ss_pred EECCCCccC-------ccChhhhccCccCC-EEECCCCce---eEEChhhhcCCCCCCEEECCCCCCC
Confidence 888776543 23344566666666 676664311 2233455677788888888887776
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.70 E-value=3.9e-17 Score=143.87 Aligned_cols=187 Identities=13% Similarity=0.118 Sum_probs=150.4
Q ss_pred cCCceEEEeec-CCC-CCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCc-ccCccc
Q 039475 36 QEKLRHLTLML-GLP-TKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTI-EIPKGL 112 (286)
Q Consensus 36 ~~~~r~ls~~~-~~~-~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~-~lP~~i 112 (286)
....+++.+.. +.. ..+|..+.++++|++|++.++..... +|..|.+++.|++|++++ |.+. .+|..+
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-----~p~~~~~l~~L~~L~Ls~----N~l~~~~p~~~ 145 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-----IPDFLSQIKTLVTLDFSY----NALSGTLPPSI 145 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-----CCGGGGGCTTCCEEECCS----SEEESCCCGGG
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-----CCHHHhCCCCCCEEeCCC----CccCCcCChHH
Confidence 35689999984 655 46788999999999999999986533 788899999999999999 9987 789999
Q ss_pred cCCCCCcEEeccc--cc-ccCCC-CCCC-CCc-----------ccccccccccCCCEEEecCCCcc-ccccccccccccc
Q 039475 113 ENLIHLRYLKLSA--VE-ELSET-CYCP-SLK-----------RLPQGRGKLINLRHLIFDKDYLA-YMANGFERLTSLR 175 (286)
Q Consensus 113 ~~L~~Lr~L~L~~--~~-~LP~~-~~~~-~l~-----------~LP~~i~~L~~L~~L~l~~~~~~-~lP~~i~~L~~L~ 175 (286)
+++++|++|++++ +. .+|.. +.+. .++ .+|..++.++ |++|++++|.+. ..|..++++++|+
T Consensus 146 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~ 224 (313)
T 1ogq_A 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQ 224 (313)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCS
T ss_pred hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCC
Confidence 9999999999998 55 77877 6443 333 5688899997 999999999988 4566799999999
Q ss_pred ccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 176 TLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 176 ~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
+|++..+... ..+..+..+++|+ .|.+.+..- .+..+..+..+++|+.|+|+.|..+
T Consensus 225 ~L~L~~N~l~--------~~~~~~~~l~~L~-~L~Ls~N~l---~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 225 KIHLAKNSLA--------FDLGKVGLSKNLN-GLDLRNNRI---YGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp EEECCSSEEC--------CBGGGCCCCTTCC-EEECCSSCC---EECCCGGGGGCTTCCEEECCSSEEE
T ss_pred EEECCCCcee--------eecCcccccCCCC-EEECcCCcc---cCcCChHHhcCcCCCEEECcCCccc
Confidence 9999877654 2333466777777 788875422 3456778899999999999999876
No 8
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=5.8e-17 Score=141.81 Aligned_cols=192 Identities=15% Similarity=0.079 Sum_probs=131.6
Q ss_pred ccCCceEEEeecCCCCCCchh-hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcccc
Q 039475 35 CQEKLRHLTLMLGLPTKFPVS-IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLE 113 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~~~~-~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~ 113 (286)
.+.+++++.+..+.+..+|.. +.++++|++|++.++....... .+..+..++.|++|++++ +.+..+|..+.
T Consensus 26 ~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~~~L~~L~Ls~----n~i~~l~~~~~ 98 (306)
T 2z66_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC---CSQSDFGTTSLKYLDLSF----NGVITMSSNFL 98 (306)
T ss_dssp CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE---EEHHHHSCSCCCEEECCS----CSEEEEEEEEE
T ss_pred CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC---cccccccccccCEEECCC----CccccChhhcC
Confidence 456899999999988777765 6899999999999987653211 356677899999999999 88888998899
Q ss_pred CCCCCcEEeccc--ccccCC--C-CCCCCC----------c-ccccccccccCCCEEEecCCCccc--cccccccccccc
Q 039475 114 NLIHLRYLKLSA--VEELSE--T-CYCPSL----------K-RLPQGRGKLINLRHLIFDKDYLAY--MANGFERLTSLR 175 (286)
Q Consensus 114 ~L~~Lr~L~L~~--~~~LP~--~-~~~~~l----------~-~LP~~i~~L~~L~~L~l~~~~~~~--lP~~i~~L~~L~ 175 (286)
.+.+|++|++++ +..+|. . ..+.++ . ..|..+.++++|++|++++|.+.. +|..++.+++|+
T Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 178 (306)
T 2z66_A 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178 (306)
T ss_dssp TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence 999999999988 666654 2 222222 2 234556777778888877777764 566677777777
Q ss_pred ccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 176 TLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 176 ~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
+|++..+... ......+..+++|+ .|.+.+..- .......+..+++|+.|+++.|...
T Consensus 179 ~L~Ls~n~l~-------~~~~~~~~~l~~L~-~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 179 FLDLSQCQLE-------QLSPTAFNSLSSLQ-VLNMSHNNF---FSLDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp EEECTTSCCC-------EECTTTTTTCTTCC-EEECTTSCC---SBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred EEECCCCCcC-------CcCHHHhcCCCCCC-EEECCCCcc---CccChhhccCcccCCEeECCCCCCc
Confidence 7777666433 22234455566666 666654321 1111234566677777777777665
No 9
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=1.2e-15 Score=131.34 Aligned_cols=181 Identities=22% Similarity=0.290 Sum_probs=138.5
Q ss_pred ccCCceEEEeecCCCCCCch-hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cc
Q 039475 35 CQEKLRHLTLMLGLPTKFPV-SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GL 112 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i 112 (286)
++..+++|.+..+.+..++. .+..+++|++|++.++..... .+..|.+++.|++|++++ +.+..+|. .+
T Consensus 35 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-----~~~~~~~l~~L~~L~l~~----n~l~~~~~~~~ 105 (270)
T 2o6q_A 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-----PAGIFKELKNLETLWVTD----NKLQALPIGVF 105 (270)
T ss_dssp CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-----CTTTTSSCTTCCEEECCS----SCCCCCCTTTT
T ss_pred CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-----ChhhhcCCCCCCEEECCC----CcCCcCCHhHc
Confidence 45678888888888766654 678889999999988875432 455678889999999998 88888776 45
Q ss_pred cCCCCCcEEecccccccCCCCCCCCCccccc-ccccccCCCEEEecCCCccccccc-ccccccccccccccccccCCccC
Q 039475 113 ENLIHLRYLKLSAVEELSETCYCPSLKRLPQ-GRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARVGGKYS 190 (286)
Q Consensus 113 ~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~ 190 (286)
+.+.+|++|++++ +.+..+|. .++++++|++|++++|.+..+|.+ ++.+++|++|++..+...
T Consensus 106 ~~l~~L~~L~l~~----------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----- 170 (270)
T 2o6q_A 106 DQLVNLAELRLDR----------NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK----- 170 (270)
T ss_dssp TTCSSCCEEECCS----------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-----
T ss_pred ccccCCCEEECCC----------CccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc-----
Confidence 8889999999985 66777765 468999999999999999999876 899999999998877544
Q ss_pred CCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475 191 SEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED 245 (286)
Q Consensus 191 ~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 245 (286)
......+..+++|+ .|.+.+.. + .......+..+++|+.|+|+.|....
T Consensus 171 --~~~~~~~~~l~~L~-~L~L~~N~-l--~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 171 --RVPEGAFDKLTELK-TLKLDNNQ-L--KRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp --CCCTTTTTTCTTCC-EEECCSSC-C--SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred --EeChhHhccCCCcC-EEECCCCc-C--CcCCHHHhccccCCCEEEecCCCeeC
Confidence 23334467777777 78887541 1 22223457788999999999998653
No 10
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.67 E-value=6.3e-16 Score=136.70 Aligned_cols=79 Identities=22% Similarity=0.253 Sum_probs=52.0
Q ss_pred cCCceEEEeecCCCCCCch-hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccC
Q 039475 36 QEKLRHLTLMLGLPTKFPV-SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLEN 114 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~ 114 (286)
+..++.+.+..+.+..++. .+.++++|++|++.++..... .|..|.++++|++|++++ +.+..+|..+.
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~Ls~----n~l~~l~~~~~- 120 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-----SPGAFAPLVKLERLYLSK----NQLKELPEKMP- 120 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-----CTTTTTTCTTCCEEECCS----SCCSBCCSSCC-
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee-----CHHHhcCCCCCCEEECCC----CcCCccChhhc-
Confidence 4566777777776655544 567777777777777765432 466677777777777777 76666665543
Q ss_pred CCCCcEEeccc
Q 039475 115 LIHLRYLKLSA 125 (286)
Q Consensus 115 L~~Lr~L~L~~ 125 (286)
.+|++|++++
T Consensus 121 -~~L~~L~l~~ 130 (330)
T 1xku_A 121 -KTLQELRVHE 130 (330)
T ss_dssp -TTCCEEECCS
T ss_pred -ccccEEECCC
Confidence 4555555554
No 11
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=5.7e-16 Score=135.02 Aligned_cols=178 Identities=20% Similarity=0.114 Sum_probs=129.6
Q ss_pred ccCCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcccc
Q 039475 35 CQEKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLE 113 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~ 113 (286)
++..++.|.+..+.+..+ +..+..+++|+.|++.++.... ++.. ..++.|++|++++ +.+..+|..++
T Consensus 29 ~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~-~~l~~L~~L~Ls~----N~l~~l~~~~~ 97 (290)
T 1p9a_G 29 LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK------LQVD-GTLPVLGTLDLSH----NQLQSLPLLGQ 97 (290)
T ss_dssp CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE------EECC-SCCTTCCEEECCS----SCCSSCCCCTT
T ss_pred CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc------ccCC-CCCCcCCEEECCC----CcCCcCchhhc
Confidence 456678888887777544 4567788888888888887543 3332 6778888888888 88888888888
Q ss_pred CCCCCcEEecccccccCCCCCCCCCcccc-cccccccCCCEEEecCCCccccccc-ccccccccccccccccccCCccCC
Q 039475 114 NLIHLRYLKLSAVEELSETCYCPSLKRLP-QGRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARVGGKYSS 191 (286)
Q Consensus 114 ~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP-~~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~ 191 (286)
.+.+|++|++++ +.++.+| ..|.++++|++|++++|.+..+|.+ |..+++|++|++..+...
T Consensus 98 ~l~~L~~L~l~~----------N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~------ 161 (290)
T 1p9a_G 98 TLPALTVLDVSF----------NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT------ 161 (290)
T ss_dssp TCTTCCEEECCS----------SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS------
T ss_pred cCCCCCEEECCC----------CcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC------
Confidence 888888888875 6677777 4578889999999999888888776 788889999888776544
Q ss_pred CCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475 192 EACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED 245 (286)
Q Consensus 192 ~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 245 (286)
......+..+++|+ .|.+.+.. ...++..+..+.+|+.|+|+.|....
T Consensus 162 -~l~~~~~~~l~~L~-~L~L~~N~----l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 162 -ELPAGLLNGLENLD-TLLLQENS----LYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp -CCCTTTTTTCTTCC-EEECCSSC----CCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred -ccCHHHhcCcCCCC-EEECCCCc----CCccChhhcccccCCeEEeCCCCccC
Confidence 22223356666666 67776431 22445566667789999998887654
No 12
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=7.7e-16 Score=132.55 Aligned_cols=177 Identities=23% Similarity=0.261 Sum_probs=139.7
Q ss_pred CCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccc-cCC
Q 039475 37 EKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGL-ENL 115 (286)
Q Consensus 37 ~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i-~~L 115 (286)
...+.+....+....+|..+. ++++.|++.++..... .+..|.++++|++|++++ +.+..+|..+ +++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~----n~l~~i~~~~~~~l 84 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSL-----PSKAFHRLTKLRLLYLND----NKLQTLPAGIFKEL 84 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCC-----CTTSSSSCTTCCEEECCS----SCCSCCCTTTTSSC
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCee-----CHHHhcCCCCCCEEECCC----CccCeeChhhhcCC
Confidence 346778888887777887653 7899999999986542 556789999999999999 9999998765 899
Q ss_pred CCCcEEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCccccccc-ccccccccccccccccccCCccCCCC
Q 039475 116 IHLRYLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARVGGKYSSEA 193 (286)
Q Consensus 116 ~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~~ 193 (286)
++|++|++++ +.+..+|.. +.++++|++|++++|.+..+|.. |+.+++|++|++..+... .
T Consensus 85 ~~L~~L~l~~----------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------~ 147 (270)
T 2o6q_A 85 KNLETLWVTD----------NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-------S 147 (270)
T ss_dssp TTCCEEECCS----------SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------C
T ss_pred CCCCEEECCC----------CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-------c
Confidence 9999999996 678888754 58999999999999999988765 899999999999877644 2
Q ss_pred CCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475 194 CNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED 245 (286)
Q Consensus 194 ~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 245 (286)
.....++.+++|+ .|.+.+..- ....+..+..+++|+.|+|+.|..+.
T Consensus 148 ~~~~~~~~l~~L~-~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 148 LPKGVFDKLTSLK-ELRLYNNQL---KRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CCTTTTTTCTTCC-EEECCSSCC---SCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCHhHccCCcccc-eeEecCCcC---cEeChhHhccCCCcCEEECCCCcCCc
Confidence 3333467777777 788865321 22223457889999999999998763
No 13
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.66 E-value=3e-16 Score=140.18 Aligned_cols=129 Identities=19% Similarity=0.181 Sum_probs=91.4
Q ss_pred ccCCceEEEeecCCCCCCch-hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-c
Q 039475 35 CQEKLRHLTLMLGLPTKFPV-SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-L 112 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i 112 (286)
++..++++.+..+.+..++. .+.++++|++|++.++..... .+..|.++++|++|++++ +.+..+|.. +
T Consensus 50 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~~ 120 (353)
T 2z80_A 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI-----EEDSFSSLGSLEHLDLSY----NYLSNLSSSWF 120 (353)
T ss_dssp CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECCS----SCCSSCCHHHH
T ss_pred ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc-----CHhhcCCCCCCCEEECCC----CcCCcCCHhHh
Confidence 34578999999988876665 688999999999999876532 567789999999999999 999999886 8
Q ss_pred cCCCCCcEEecccccccCCCCCCCCCccccc--ccccccCCCEEEecCC-Cccccc-ccccccccccccccccc
Q 039475 113 ENLIHLRYLKLSAVEELSETCYCPSLKRLPQ--GRGKLINLRHLIFDKD-YLAYMA-NGFERLTSLRTLSGFTV 182 (286)
Q Consensus 113 ~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~--~i~~L~~L~~L~l~~~-~~~~lP-~~i~~L~~L~~L~~~~~ 182 (286)
+++++|++|++++ +.++.+|. .++++++|++|++++| .+..++ ..++++++|++|++..+
T Consensus 121 ~~l~~L~~L~L~~----------n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 121 KPLSSLTFLNLLG----------NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp TTCTTCSEEECTT----------CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred CCCccCCEEECCC----------CCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 9999999999987 33444443 3445555555555544 233332 23455555555544443
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.65 E-value=5e-16 Score=148.09 Aligned_cols=132 Identities=17% Similarity=0.158 Sum_probs=108.3
Q ss_pred ccCCceEEEeecCCCCCCch-hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-Cccc
Q 039475 35 CQEKLRHLTLMLGLPTKFPV-SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKGL 112 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i 112 (286)
++..++++.+..+....+++ .+.++++|++|+++++..... .|..|.++++|++|+|++ +.+..+ |..|
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-----~~~~~~~l~~L~~L~Ls~----n~l~~~~p~~~ 100 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI-----EDKAWHGLHHLSNLILTG----NPIQSFSPGSF 100 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-----CTTTTTTCTTCCEEECTT----CCCCCCCTTSS
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccccc-----CHHHhhchhhcCEeECCC----CcccccChhhc
Confidence 56789999999988865544 788999999999999976532 677899999999999999 998877 7899
Q ss_pred cCCCCCcEEecccccccCCCCCCCCCcccc-cccccccCCCEEEecCCCcc--ccccccccccccccccccccccc
Q 039475 113 ENLIHLRYLKLSAVEELSETCYCPSLKRLP-QGRGKLINLRHLIFDKDYLA--YMANGFERLTSLRTLSGFTVARV 185 (286)
Q Consensus 113 ~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP-~~i~~L~~L~~L~l~~~~~~--~lP~~i~~L~~L~~L~~~~~~~~ 185 (286)
+++++|++|++++ +.+..+| ..++++++|++|++++|.+. .+|..++++++|++|++..+...
T Consensus 101 ~~l~~L~~L~L~~----------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 101 SGLTSLENLVAVE----------TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp TTCTTCCEEECTT----------SCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred CCcccCCEEEccC----------CccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 9999999999996 5566666 56788888888888888776 46777888888888887766543
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.65 E-value=1.3e-15 Score=131.95 Aligned_cols=163 Identities=22% Similarity=0.264 Sum_probs=123.1
Q ss_pred cCCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCC-CCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-Cccc
Q 039475 36 QEKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDS-KGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKGL 112 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~-~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i 112 (286)
..+++++.+..+.+..+ +..+..+++|++|++.++. .... .+..|..++.|++|++++ +.+..+ |..+
T Consensus 55 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-----~~~~~~~l~~L~~L~l~~----n~l~~~~~~~~ 125 (285)
T 1ozn_A 55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-----DPATFHGLGRLHTLHLDR----CGLQELGPGLF 125 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-----CTTTTTTCTTCCEEECTT----SCCCCCCTTTT
T ss_pred CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-----CHHHhcCCcCCCEEECCC----CcCCEECHhHh
Confidence 35678888888777554 5677888888999888886 3321 466778888888888888 887766 5567
Q ss_pred cCCCCCcEEeccc--ccccCCC-C-----------CCCCCccccc-ccccccCCCEEEecCCCcccc-cccccccccccc
Q 039475 113 ENLIHLRYLKLSA--VEELSET-C-----------YCPSLKRLPQ-GRGKLINLRHLIFDKDYLAYM-ANGFERLTSLRT 176 (286)
Q Consensus 113 ~~L~~Lr~L~L~~--~~~LP~~-~-----------~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~l-P~~i~~L~~L~~ 176 (286)
+++++|++|++++ +..+|.. . ..+.+..+|. .+.++++|++|++++|.+..+ |..++++++|++
T Consensus 126 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 205 (285)
T 1ozn_A 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205 (285)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccE
Confidence 8888888888887 6666654 2 2345667776 489999999999999999976 667999999999
Q ss_pred cccccccccCCccCCCCCCcccccCcccccceeEEcccC
Q 039475 177 LSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLG 215 (286)
Q Consensus 177 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~ 215 (286)
|++..+... ......+..+++|+ .|.+.+..
T Consensus 206 L~l~~n~l~-------~~~~~~~~~l~~L~-~L~l~~N~ 236 (285)
T 1ozn_A 206 LYLFANNLS-------ALPTEALAPLRALQ-YLRLNDNP 236 (285)
T ss_dssp EECCSSCCS-------CCCHHHHTTCTTCC-EEECCSSC
T ss_pred eeCCCCcCC-------cCCHHHcccCcccC-EEeccCCC
Confidence 999887654 33334577788888 78887653
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.65 E-value=6.8e-16 Score=151.57 Aligned_cols=90 Identities=12% Similarity=0.084 Sum_probs=50.3
Q ss_pred ccccccCCCEEEecCCCcc-cccccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchh
Q 039475 144 GRGKLINLRHLIFDKDYLA-YMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLK 222 (286)
Q Consensus 144 ~i~~L~~L~~L~l~~~~~~-~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~ 222 (286)
.++++++|+.|++++|.+. .+|..|+++++|+.|++..+... +..+..+++|++|+ .|.+.+. .-.+.
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~-------g~ip~~l~~L~~L~-~LdLs~N---~l~g~ 695 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS-------GSIPDEVGDLRGLN-ILDLSSN---KLDGR 695 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCC-------SCCCGGGGGCTTCC-EEECCSS---CCEEC
T ss_pred hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccC-------CCCChHHhCCCCCC-EEECCCC---cccCc
Confidence 3444556666666666655 45555666666666666555443 34445555555555 5555432 11344
Q ss_pred hhhhcCCCCCCceEEEEeCCCC
Q 039475 223 INAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 223 ~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
++..+..++.|++|+|++|+..
T Consensus 696 ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 696 IPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CCGGGGGCCCCSEEECCSSEEE
T ss_pred CChHHhCCCCCCEEECcCCccc
Confidence 5555666666666666666554
No 17
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=3.2e-16 Score=135.19 Aligned_cols=190 Identities=16% Similarity=0.130 Sum_probs=115.4
Q ss_pred ccCCceEEEeecCCCCCCch-hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccC-ccc
Q 039475 35 CQEKLRHLTLMLGLPTKFPV-SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIP-KGL 112 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP-~~i 112 (286)
++..++++.+..+.+..++. .+.++++|++|++.++..... .+..|.++++|++|++++ +.+..++ ..+
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~ 96 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-----EDGAYQSLSHLSTLILTG----NPIQSLALGAF 96 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-----CTTTTTTCTTCCEEECTT----CCCCEECTTTT
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-----CHHHccCCcCCCEEECCC----CccCccChhhh
Confidence 46679999999988866654 788899999999999976532 556789999999999999 9988776 578
Q ss_pred cCCCCCcEEeccc--ccccCCC--C----------CCCCCcc--cccccccccCCCEEEecCCCcccccc-ccccccccc
Q 039475 113 ENLIHLRYLKLSA--VEELSET--C----------YCPSLKR--LPQGRGKLINLRHLIFDKDYLAYMAN-GFERLTSLR 175 (286)
Q Consensus 113 ~~L~~Lr~L~L~~--~~~LP~~--~----------~~~~l~~--LP~~i~~L~~L~~L~l~~~~~~~lP~-~i~~L~~L~ 175 (286)
+++.+|++|++++ +..++.. . ..+.+.. +|..++++++|++|++++|.+..+|. .++.+++|+
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred cCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc
Confidence 9999999999987 4444332 1 1122222 34555555555555555555554432 244444444
Q ss_pred ----ccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475 176 ----TLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED 245 (286)
Q Consensus 176 ----~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 245 (286)
+|++..+... ... .......+|+ .|.+.+.. + .......+..+++|+.|+++.|....
T Consensus 177 ~l~l~L~ls~n~l~-------~~~-~~~~~~~~L~-~L~L~~n~-l--~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 177 LLNLSLDLSLNPMN-------FIQ-PGAFKEIRLK-ELALDTNQ-L--KSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp TCCEEEECCSSCCC-------EEC-TTSSCSCCEE-EEECCSSC-C--SCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred ccceeeecCCCccc-------ccC-ccccCCCccc-EEECCCCc-e--eecCHhHhcccccccEEEccCCcccc
Confidence 2333222211 000 1111111344 45554321 1 11122345677888888888887764
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.64 E-value=1.8e-15 Score=148.58 Aligned_cols=178 Identities=21% Similarity=0.245 Sum_probs=118.7
Q ss_pred CCceEEEeecCCCC-CCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCc-ccCccccC
Q 039475 37 EKLRHLTLMLGLPT-KFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTI-EIPKGLEN 114 (286)
Q Consensus 37 ~~~r~ls~~~~~~~-~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~-~lP~~i~~ 114 (286)
.+.+.+.+..+... .+|..+..+++|++|++.+|..... +|..|.+++.|++|++++ |.+. .+|..+++
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----~p~~l~~l~~L~~L~L~~----N~l~~~~p~~~~~ 512 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE-----IPSGLSNCTNLNWISLSN----NRLTGEIPKWIGR 512 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC-----CCGGGGGCTTCCEEECCS----SCCCSCCCGGGGG
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCc-----CCHHHhcCCCCCEEEccC----CccCCcCChHHhc
Confidence 46777887777763 5677777788888888888776543 667777778888888877 7766 67777777
Q ss_pred CCCCcEEecccccccCCCCCCCCCc-ccccccccccCCCEEEecCCCcc-ccccc-------------------------
Q 039475 115 LIHLRYLKLSAVEELSETCYCPSLK-RLPQGRGKLINLRHLIFDKDYLA-YMANG------------------------- 167 (286)
Q Consensus 115 L~~Lr~L~L~~~~~LP~~~~~~~l~-~LP~~i~~L~~L~~L~l~~~~~~-~lP~~------------------------- 167 (286)
+++|++|++++ +.+. .+|..++++++|+.|++++|.+. .+|.+
T Consensus 513 l~~L~~L~L~~----------N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (768)
T 3rgz_A 513 LENLAILKLSN----------NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 582 (768)
T ss_dssp CTTCCEEECCS----------SCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCS
T ss_pred CCCCCEEECCC----------CcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccc
Confidence 77788887775 3343 56667777777777777666554 44433
Q ss_pred ---------------------------------------------ccccccccccccccccccCCccCCCCCCcccccCc
Q 039475 168 ---------------------------------------------FERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNL 202 (286)
Q Consensus 168 ---------------------------------------------i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L 202 (286)
++.+++|+.|++..+... +.....++++
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~-------g~ip~~l~~l 655 (768)
T 3rgz_A 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS-------GYIPKEIGSM 655 (768)
T ss_dssp CCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB-------SCCCGGGGGC
T ss_pred ccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc-------ccCCHHHhcc
Confidence 233455666666665543 4555566677
Q ss_pred ccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 203 NHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 203 ~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
+.|+ .|.+.+.. -.+.++..++.+++|+.|+|+.|+..
T Consensus 656 ~~L~-~L~Ls~N~---l~g~ip~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 656 PYLF-ILNLGHND---ISGSIPDEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp TTCC-EEECCSSC---CCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred ccCC-EEeCcCCc---cCCCCChHHhCCCCCCEEECCCCccc
Confidence 7666 66665431 14456667777777777777777765
No 19
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=2.9e-15 Score=131.61 Aligned_cols=122 Identities=18% Similarity=0.215 Sum_probs=81.1
Q ss_pred cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475 36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL 115 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L 115 (286)
..+++++.+..+.+..++ .+..+++|++|+++++.... ++. +..+++|++|++++ +.+..+| .++.+
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~------~~~-~~~l~~L~~L~L~~----n~l~~~~-~~~~l 106 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITD------LAP-LKNLTKITELELSG----NPLKNVS-AIAGL 106 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC------CGG-GTTCCSCCEEECCS----CCCSCCG-GGTTC
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCC------Chh-HccCCCCCEEEccC----CcCCCch-hhcCC
Confidence 356788888877776655 57778888888888886543 344 77888888888888 8877765 68888
Q ss_pred CCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccc
Q 039475 116 IHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTV 182 (286)
Q Consensus 116 ~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~ 182 (286)
.+|++|++++ +.+..+|. ++++++|++|++++|.+..+|. ++.+++|++|++..+
T Consensus 107 ~~L~~L~l~~----------n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 107 QSIKTLDLTS----------TQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA 161 (308)
T ss_dssp TTCCEEECTT----------SCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS
T ss_pred CCCCEEECCC----------CCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC
Confidence 8888888876 33444443 5555555555555555554443 555555555554444
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.64 E-value=2.7e-15 Score=139.15 Aligned_cols=163 Identities=21% Similarity=0.194 Sum_probs=119.6
Q ss_pred ccCCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-c
Q 039475 35 CQEKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-L 112 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i 112 (286)
++..++.|.+..+.+..+ +..+.++++|++|++.++..... .|..|.++++|++|+|++ +.+..+|.. +
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~ 100 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV-----EPGAFNNLFNLRTLGLRS----NRLKLIPLGVF 100 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECCS----SCCCSCCTTSS
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEe-----ChhhhhCCccCCEEECCC----CcCCccCcccc
Confidence 567899999999988655 56788999999999999976542 678899999999999999 999998874 6
Q ss_pred cCCCCCcEEeccc--ccccCCC--CCCCCCc----------cc-ccccccccCCCEEEecCCCccccccc-ccccccccc
Q 039475 113 ENLIHLRYLKLSA--VEELSET--CYCPSLK----------RL-PQGRGKLINLRHLIFDKDYLAYMANG-FERLTSLRT 176 (286)
Q Consensus 113 ~~L~~Lr~L~L~~--~~~LP~~--~~~~~l~----------~L-P~~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~ 176 (286)
+++.+|++|+|++ +..++.. ..+.+++ .+ |..+.++++|++|++++|.+..+|.. ++++++|+.
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcE
Confidence 9999999999998 5555433 3333333 33 45677788888888888877777654 777888888
Q ss_pred cccccccccCCccCCCCCCcccccCcccccceeEEccc
Q 039475 177 LSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGL 214 (286)
Q Consensus 177 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l 214 (286)
|++..+... ......+..+++|+ .|.+.+.
T Consensus 181 L~l~~n~i~-------~~~~~~~~~l~~L~-~L~l~~~ 210 (477)
T 2id5_A 181 LRLRHLNIN-------AIRDYSFKRLYRLK-VLEISHW 210 (477)
T ss_dssp EEEESCCCC-------EECTTCSCSCTTCC-EEEEECC
T ss_pred EeCCCCcCc-------EeChhhcccCcccc-eeeCCCC
Confidence 877665433 22223455556666 6666543
No 21
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.64 E-value=1e-15 Score=138.44 Aligned_cols=128 Identities=19% Similarity=0.182 Sum_probs=90.2
Q ss_pred cCCceEEEeecCCCCCCchh-hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-ccc
Q 039475 36 QEKLRHLTLMLGLPTKFPVS-IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLE 113 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~~~~~-~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~ 113 (286)
..+++++.+..+.+..+|.. +..+++|++|++.++..... .+..|..+++|++|++++ +.+..+|. .++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~ 114 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-----DTYAFAYAHTIQKLYMGF----NAIRYLPPHVFQ 114 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEE-----CTTTTTTCTTCCEEECCS----SCCCCCCTTTTT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccccc-----ChhhccCCCCcCEEECCC----CCCCcCCHHHhc
Confidence 36789999998888777765 57899999999999876532 556789999999999999 99887754 589
Q ss_pred CCCCCcEEecccccccCCCCCCCCCccccccc-ccccCCCEEEecCCCccccccc-ccccccccccccccc
Q 039475 114 NLIHLRYLKLSAVEELSETCYCPSLKRLPQGR-GKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTV 182 (286)
Q Consensus 114 ~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i-~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~ 182 (286)
++++|++|++++ +.+..+|..+ +++++|++|++++|.+..+++. ++++++|++|++..+
T Consensus 115 ~l~~L~~L~L~~----------n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 115 NVPLLTVLVLER----------NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp TCTTCCEEECCS----------SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS
T ss_pred CCCCCCEEECCC----------CccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC
Confidence 999999999987 3444555442 4555555555555555544332 555555555544433
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.63 E-value=1.8e-16 Score=152.54 Aligned_cols=190 Identities=14% Similarity=0.089 Sum_probs=143.4
Q ss_pred CCceEEEeecCCC-CCCchhhhcCCCCcEEEeccCCC------CC-----------------------------------
Q 039475 37 EKLRHLTLMLGLP-TKFPVSIFDAKKLRSLSLFYDSK------GQ----------------------------------- 74 (286)
Q Consensus 37 ~~~r~ls~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~~------~~----------------------------------- 74 (286)
.+++.+.+..+.. ..+|+.+.++++||+|++++|.. ..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 4688888888777 46789999999999999998842 00
Q ss_pred --------------------------------CCcCccchhhhcCCCCCcEEEeecccCCccCcc---------------
Q 039475 75 --------------------------------SAASPVLQGLFDQLTCLRALKIEELWYGDQTIE--------------- 107 (286)
Q Consensus 75 --------------------------------~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~--------------- 107 (286)
..+.. +|..|+++++|++|+|++ +.+..
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~----n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGN----SPFVAENICEAWENENSEYA 235 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEES----CCCCGGGBSSSCSCTTSHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcC----Cccccccccccccccccchh
Confidence 01111 677899999999999999 99887
Q ss_pred ---cCcccc--CCCCCcEEeccc---ccccCCC-CCC----------CC-Cc--ccccccccc------cCCCEEEecCC
Q 039475 108 ---IPKGLE--NLIHLRYLKLSA---VEELSET-CYC----------PS-LK--RLPQGRGKL------INLRHLIFDKD 159 (286)
Q Consensus 108 ---lP~~i~--~L~~Lr~L~L~~---~~~LP~~-~~~----------~~-l~--~LP~~i~~L------~~L~~L~l~~~ 159 (286)
+|++++ ++++|++|++++ .+.+|.. +.+ +. +. .+|..+++| ++|++|++++|
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 999999 999999999998 5678876 522 22 44 488888887 89999999999
Q ss_pred Ccccccc--cccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCC-CceE
Q 039475 160 YLAYMAN--GFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKN-LVHL 236 (286)
Q Consensus 160 ~~~~lP~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~-L~~L 236 (286)
.+..+|. .++++++|++|++..+... +... .++.+++|+ .|.+.+.. ...++..+..+++ |+.|
T Consensus 316 ~l~~ip~~~~l~~l~~L~~L~L~~N~l~-------g~ip-~~~~l~~L~-~L~L~~N~----l~~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 316 NLKTFPVETSLQKMKKLGMLECLYNQLE-------GKLP-AFGSEIKLA-SLNLAYNQ----ITEIPANFCGFTEQVENL 382 (636)
T ss_dssp CCSSCCCHHHHTTCTTCCEEECCSCCCE-------EECC-CCEEEEEES-EEECCSSE----EEECCTTSEEECTTCCEE
T ss_pred cCCccCchhhhccCCCCCEEeCcCCcCc-------cchh-hhCCCCCCC-EEECCCCc----cccccHhhhhhcccCcEE
Confidence 8888988 7999999999988776543 1222 666667676 67665321 1245556777777 8888
Q ss_pred EEEeCCCC
Q 039475 237 TLDFDKGE 244 (286)
Q Consensus 237 ~L~~~~~~ 244 (286)
+++.|..+
T Consensus 383 ~Ls~N~l~ 390 (636)
T 4eco_A 383 SFAHNKLK 390 (636)
T ss_dssp ECCSSCCS
T ss_pred EccCCcCc
Confidence 88777765
No 23
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=4.4e-15 Score=126.42 Aligned_cols=174 Identities=20% Similarity=0.190 Sum_probs=97.9
Q ss_pred ceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cccCCCC
Q 039475 39 LRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLENLIH 117 (286)
Q Consensus 39 ~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~L~~ 117 (286)
.+++....+....+|..+. ++++.|++.++..... .+..|.+++.|++|+|++ +.+..++. .++++.+
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~l~~ 84 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATL-----SDATFRGLTKLTWLNLDY----NQLQTLSAGVFDDLTE 84 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCC-----CTTTTTTCTTCCEEECTT----SCCCCCCTTTTTTCTT
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCcc-----CHhHhcCcccCCEEECCC----CcCCccCHhHhccCCc
Confidence 3455555555555555443 4666666666654432 444566666666666666 66665443 3566666
Q ss_pred CcEEecccccccCCCCCCCCCccccc-ccccccCCCEEEecCCCccccccc-ccccccccccccccccccCCccCCCCCC
Q 039475 118 LRYLKLSAVEELSETCYCPSLKRLPQ-GRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARVGGKYSSEACN 195 (286)
Q Consensus 118 Lr~L~L~~~~~LP~~~~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~ 195 (286)
|++|++++ +.+..+|. .+..+++|++|++++|.+..+|.+ ++.+++|++|++..+... ...
T Consensus 85 L~~L~L~~----------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-------~~~ 147 (251)
T 3m19_A 85 LGTLGLAN----------NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-------SIP 147 (251)
T ss_dssp CCEEECTT----------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------CCC
T ss_pred CCEEECCC----------CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-------ccC
Confidence 66666664 45555553 346666666666666666666554 566666666666555433 222
Q ss_pred cccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 196 LEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 196 ~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
...++.+++|+ .|.+.+..- ....+..+..+++|+.|+|+.|...
T Consensus 148 ~~~~~~l~~L~-~L~L~~N~l---~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 148 AGAFDKLTNLQ-TLSLSTNQL---QSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTTCTTCC-EEECCSSCC---SCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred HHHcCcCcCCC-EEECCCCcC---CccCHHHHhCCCCCCEEEeeCCcee
Confidence 22345555555 555553211 1112234566667777777766654
No 24
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.63 E-value=6.2e-15 Score=127.05 Aligned_cols=177 Identities=21% Similarity=0.220 Sum_probs=138.9
Q ss_pred cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-ccC
Q 039475 36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-LEN 114 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i~~ 114 (286)
...++.+.+..+....+ +.+..+++|++|++.++.... ++ .+..++.|++|++++ +.+..+|.. +++
T Consensus 40 l~~L~~L~l~~~~i~~~-~~l~~l~~L~~L~l~~n~l~~------~~-~l~~l~~L~~L~L~~----n~l~~~~~~~~~~ 107 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV-QGIQYLPNVRYLALGGNKLHD------IS-ALKELTNLTYLILTG----NQLQSLPNGVFDK 107 (272)
T ss_dssp HTTCCEEECTTSCCCCC-TTGGGCTTCCEEECTTSCCCC------CG-GGTTCTTCCEEECTT----SCCCCCCTTTTTT
T ss_pred ccceeeeeeCCCCcccc-cccccCCCCcEEECCCCCCCC------ch-hhcCCCCCCEEECCC----CccCccChhHhcC
Confidence 46788999988877554 457889999999999998653 33 578999999999999 998887765 699
Q ss_pred CCCCcEEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCccccccc-ccccccccccccccccccCCccCCC
Q 039475 115 LIHLRYLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARVGGKYSSE 192 (286)
Q Consensus 115 L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~ 192 (286)
+.+|++|++++ +.+..+|.. ++++++|++|++++|.+..+|.+ ++.+++|++|++..+...
T Consensus 108 l~~L~~L~L~~----------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------- 170 (272)
T 3rfs_A 108 LTNLKELVLVE----------NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ------- 170 (272)
T ss_dssp CTTCCEEECTT----------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------
T ss_pred CcCCCEEECCC----------CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-------
Confidence 99999999986 667777765 68999999999999999988776 789999999998877644
Q ss_pred CCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475 193 ACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED 245 (286)
Q Consensus 193 ~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 245 (286)
......++.+++|+ .|.+.+..- ....+..+..+++|+.|+++.|....
T Consensus 171 ~~~~~~~~~l~~L~-~L~L~~N~l---~~~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 171 SLPEGVFDKLTQLK-DLRLYQNQL---KSVPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp CCCTTTTTTCTTCC-EEECCSSCC---SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCHHHhcCCccCC-EEECCCCcC---CccCHHHHhCCcCCCEEEccCCCccc
Confidence 33333467777777 787775321 22333557889999999999997753
No 25
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.62 E-value=2.1e-15 Score=133.54 Aligned_cols=78 Identities=21% Similarity=0.225 Sum_probs=41.4
Q ss_pred CCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475 37 EKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL 115 (286)
Q Consensus 37 ~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L 115 (286)
..++.+.+..+.+..+ +..+.++++|++|++.++..... .|..|.++++|++|++++ +.+..+|..+.
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~----n~l~~l~~~~~-- 122 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI-----HEKAFSPLRKLQKLYISK----NHLVEIPPNLP-- 122 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-----CGGGSTTCTTCCEEECCS----SCCCSCCSSCC--
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc-----CHhHhhCcCCCCEEECCC----CcCCccCcccc--
Confidence 3456666665555433 23455666666666666554321 355556666666666666 55555554443
Q ss_pred CCCcEEeccc
Q 039475 116 IHLRYLKLSA 125 (286)
Q Consensus 116 ~~Lr~L~L~~ 125 (286)
.+|++|++++
T Consensus 123 ~~L~~L~l~~ 132 (332)
T 2ft3_A 123 SSLVELRIHD 132 (332)
T ss_dssp TTCCEEECCS
T ss_pred ccCCEEECCC
Confidence 4444444443
No 26
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=3.3e-15 Score=130.17 Aligned_cols=176 Identities=18% Similarity=0.033 Sum_probs=135.5
Q ss_pred cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475 36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL 115 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L 115 (286)
..+.+.+....+....+|..+. ++++.|++.+|..... .+..|.+++.|++|+|++ +.+..+|.. +.+
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~-~~l 76 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTF-----SLATLMPYTRLTQLNLDR----AELTKLQVD-GTL 76 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEE-----EGGGGTTCTTCCEEECTT----SCCCEEECC-SCC
T ss_pred cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCcc-----CHHHhhcCCCCCEEECCC----CccCcccCC-CCC
Confidence 3457788888777777777663 7899999999886542 567788999999999999 888888765 889
Q ss_pred CCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCccccccc-ccccccccccccccccccCCccCCCCC
Q 039475 116 IHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARVGGKYSSEAC 194 (286)
Q Consensus 116 ~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~ 194 (286)
.+|++|++++ +.+..+|..+..+++|++|++++|.+..+|++ |+.+++|++|++..+... ..
T Consensus 77 ~~L~~L~Ls~----------N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-------~~ 139 (290)
T 1p9a_G 77 PVLGTLDLSH----------NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-------TL 139 (290)
T ss_dssp TTCCEEECCS----------SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-------CC
T ss_pred CcCCEEECCC----------CcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-------cc
Confidence 9999999986 77888998889999999999999999988755 899999999988877644 23
Q ss_pred CcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 195 NLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 195 ~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
....+..+++|+ .|.+.+..- .......+..+++|+.|+|+.|+.+
T Consensus 140 ~~~~~~~l~~L~-~L~L~~N~l---~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 140 PPGLLTPTPKLE-KLSLANNNL---TELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CTTTTTTCTTCC-EEECTTSCC---SCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ChhhcccccCCC-EEECCCCcC---CccCHHHhcCcCCCCEEECCCCcCC
Confidence 333456677777 777764311 2222244677889999999998876
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.61 E-value=6.3e-15 Score=138.00 Aligned_cols=175 Identities=17% Similarity=0.176 Sum_probs=94.8
Q ss_pred CCceEEEeecCCCCCCc-hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475 37 EKLRHLTLMLGLPTKFP-VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL 115 (286)
Q Consensus 37 ~~~r~ls~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L 115 (286)
.+++++.+..+.+..++ ..+..+++|++|++++|..... .|..|.++++|++|+|++ |.+..+|.. .+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~----N~l~~lp~~--~l 89 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-----DISVFKFNQELEYLDLSH----NKLVKISCH--PT 89 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-----EGGGGTTCTTCCEEECCS----SCCCEEECC--CC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCc-----ChHHhhcccCCCEEecCC----CceeecCcc--cc
Confidence 45666666666654443 4566666666666666654331 455666666666666666 666666655 56
Q ss_pred CCCcEEecccccccCCCCCCCCCcc--cccccccccCCCEEEecCCCcccccccccccccc--cccccccccccCCccCC
Q 039475 116 IHLRYLKLSAVEELSETCYCPSLKR--LPQGRGKLINLRHLIFDKDYLAYMANGFERLTSL--RTLSGFTVARVGGKYSS 191 (286)
Q Consensus 116 ~~Lr~L~L~~~~~LP~~~~~~~l~~--LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L--~~L~~~~~~~~~~~~~~ 191 (286)
.+|++|++++ +.+.. +|..++++++|++|++++|.+.. ..++.+++| ++|++..+....
T Consensus 90 ~~L~~L~L~~----------N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~----- 152 (520)
T 2z7x_B 90 VNLKHLDLSF----------NAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYG----- 152 (520)
T ss_dssp CCCSEEECCS----------SCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTT-----
T ss_pred CCccEEeccC----------CccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccc-----
Confidence 6666666664 44443 45666666666666666666554 235555555 666655544310
Q ss_pred CCCCcccccCcccccceeEEcccCCccc-chhhhhhcCCCCCCceEEEEeCC
Q 039475 192 EACNLEGLRNLNHLRQFLRICGLGNLQM-RLKINAHLEKKKNLVHLTLDFDK 242 (286)
Q Consensus 192 ~~~~~~~l~~L~~L~~~L~i~~l~~~~~-~~~~~~~l~~l~~L~~L~L~~~~ 242 (286)
.+..+..++.+.. + .+.+. +..... .......+..+++|+.|++++|.
T Consensus 153 ~~~~~~~l~~l~~-~-~l~l~-l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 201 (520)
T 2z7x_B 153 EKEDPEGLQDFNT-E-SLHIV-FPTNKEFHFILDVSVKTVANLELSNIKCVL 201 (520)
T ss_dssp SSCCTTTTTTCCE-E-EEEEE-CCSSSCCCCCCCCCCTTCSEEEECCEEECC
T ss_pred ccccccccccccc-c-eEEEE-eccCcchhhhhhhhhhcccceeeccccccc
Confidence 0222333443331 1 22221 111111 11222345567788888888876
No 28
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.60 E-value=1.9e-15 Score=145.48 Aligned_cols=138 Identities=14% Similarity=0.182 Sum_probs=100.1
Q ss_pred cCCceEEEeecCCCCC------------------Cchhhh--cCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEE
Q 039475 36 QEKLRHLTLMLGLPTK------------------FPVSIF--DAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALK 95 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~------------------~~~~~~--~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~ 95 (286)
..+.+.+.+..+.+.. +|..+. ++++|++|++.+|..... +|..|.+++.|++|+
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK-----LPTFLKALPEMQLIN 279 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS-----CCTTTTTCSSCCEEE
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc-----ChHHHhcCCCCCEEE
Confidence 4568888888888866 888887 899999999988876543 777888888888888
Q ss_pred eecccCCcc-Cc--ccCccccCC------CCCcEEeccc--ccccCC--C-CC----------CCCCc-ccccccccccC
Q 039475 96 IEELWYGDQ-TI--EIPKGLENL------IHLRYLKLSA--VEELSE--T-CY----------CPSLK-RLPQGRGKLIN 150 (286)
Q Consensus 96 L~~~~~~~~-i~--~lP~~i~~L------~~Lr~L~L~~--~~~LP~--~-~~----------~~~l~-~LP~~i~~L~~ 150 (286)
+++ |. +. .+|..+++| ++|++|++++ +..+|. . +. .+.+. .+| .++++++
T Consensus 280 Ls~----n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 280 VAC----NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp CTT----CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred CcC----CCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence 888 76 76 478888776 8888888887 556666 4 32 22334 566 6666667
Q ss_pred CCEEEecCCCccccccccccccc-cccccccccc
Q 039475 151 LRHLIFDKDYLAYMANGFERLTS-LRTLSGFTVA 183 (286)
Q Consensus 151 L~~L~l~~~~~~~lP~~i~~L~~-L~~L~~~~~~ 183 (286)
|++|++++|.+..+|.+++++++ |++|++..+.
T Consensus 355 L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp ESEEECCSSEEEECCTTSEEECTTCCEEECCSSC
T ss_pred CCEEECCCCccccccHhhhhhcccCcEEEccCCc
Confidence 77777766666666666666666 7766665554
No 29
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.59 E-value=2.1e-15 Score=131.86 Aligned_cols=184 Identities=20% Similarity=0.117 Sum_probs=109.1
Q ss_pred eEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc---CccccCCC
Q 039475 40 RHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI---PKGLENLI 116 (286)
Q Consensus 40 r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l---P~~i~~L~ 116 (286)
+.+.........+|..+ .++|+.|++.++..... .+..|.++++|++|++++ +.+..+ |..+..+.
T Consensus 10 ~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~i-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~~~~~ 78 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSL-----PHGVFDKLTQLTKLSLSS----NGLSFKGCCSQSDFGTT 78 (306)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCCC-----CTTTTTTCTTCSEEECCS----SCCCEEEEEEHHHHSCS
T ss_pred CEEEcCCCCcccCCCCC--CCCCCEEECCCCccCcc-----CHhHhhccccCCEEECCC----CccCcccCccccccccc
Confidence 35566666666777655 47999999999986531 445689999999999999 888755 67888999
Q ss_pred CCcEEeccc--ccccCCC-CCCCC----------Ccccc--cccccccCCCEEEecCCCccccc-ccccccccccccccc
Q 039475 117 HLRYLKLSA--VEELSET-CYCPS----------LKRLP--QGRGKLINLRHLIFDKDYLAYMA-NGFERLTSLRTLSGF 180 (286)
Q Consensus 117 ~Lr~L~L~~--~~~LP~~-~~~~~----------l~~LP--~~i~~L~~L~~L~l~~~~~~~lP-~~i~~L~~L~~L~~~ 180 (286)
+|++|++++ +..+|.. ..+.. +..+| ..+.++++|++|++++|.+...+ ..++.+++|++|++.
T Consensus 79 ~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 79 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp CCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred ccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence 999999997 4444443 32222 22223 23455555555555555544332 235555555555554
Q ss_pred cccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 181 TVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
.+... .......+..+++|+ .|.+.+..- ....+..+..+++|+.|+++.|..+
T Consensus 159 ~n~l~------~~~~~~~~~~l~~L~-~L~Ls~n~l---~~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 159 GNSFQ------ENFLPDIFTELRNLT-FLDLSQCQL---EQLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp TCEEG------GGEECSCCTTCTTCC-EEECTTSCC---CEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCccc------cccchhHHhhCcCCC-EEECCCCCc---CCcCHHHhcCCCCCCEEECCCCccC
Confidence 44322 001222344445555 555543211 2222345666677777777776665
No 30
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.59 E-value=3.8e-14 Score=124.43 Aligned_cols=170 Identities=18% Similarity=0.197 Sum_probs=139.8
Q ss_pred cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475 36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL 115 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L 115 (286)
..+++.+.+..+.+..++. +..+++|+.|++.++.... ++ .+..++.|++|++++ +.+..+|. ++.+
T Consensus 62 l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~------~~-~~~~l~~L~~L~l~~----n~l~~~~~-l~~l 128 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN------VS-AIAGLQSIKTLDLTS----TQITDVTP-LAGL 128 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC------CG-GGTTCTTCCEEECTT----SCCCCCGG-GTTC
T ss_pred cCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC------ch-hhcCCCCCCEEECCC----CCCCCchh-hcCC
Confidence 4678999999998877777 8999999999999998653 44 578999999999999 99998875 9999
Q ss_pred CCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCC
Q 039475 116 IHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACN 195 (286)
Q Consensus 116 ~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~ 195 (286)
++|++|++++ +.+..+|. ++++++|++|++++|.+..+|. ++.+++|++|++..+... .
T Consensus 129 ~~L~~L~l~~----------n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~---------~ 187 (308)
T 1h6u_A 129 SNLQVLYLDL----------NQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKIS---------D 187 (308)
T ss_dssp TTCCEEECCS----------SCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC---------C
T ss_pred CCCCEEECCC----------CccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccC---------c
Confidence 9999999996 67888876 8999999999999999998877 999999999998877543 2
Q ss_pred cccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475 196 LEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED 245 (286)
Q Consensus 196 ~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 245 (286)
+..+..+++|+ .|.+.+..- .. .+ .+..+++|+.|+++.|..+.
T Consensus 188 ~~~l~~l~~L~-~L~L~~N~l-~~---~~-~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 188 ISPLASLPNLI-EVHLKNNQI-SD---VS-PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGGGGGCTTCC-EEECTTSCC-CB---CG-GGTTCTTCCEEEEEEEEEEC
T ss_pred ChhhcCCCCCC-EEEccCCcc-Cc---cc-cccCCCCCCEEEccCCeeec
Confidence 33367777777 788875422 11 11 37889999999999998753
No 31
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.59 E-value=7.2e-15 Score=138.35 Aligned_cols=179 Identities=16% Similarity=0.149 Sum_probs=136.1
Q ss_pred ccCCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-c
Q 039475 35 CQEKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-L 112 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i 112 (286)
.+..++++.+..+.+..+ +..+..+++|++|+++++..... .|..|.++++|++|++++ +.+..+|.. +
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~~ 94 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI-----EGDAFYSLGSLEHLDLSD----NHLSSLSSSWF 94 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECTT----SCCCSCCHHHH
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc-----ChhhccccccCCEEECCC----CccCccCHHHh
Confidence 346799999999888554 56789999999999999986542 667899999999999999 999988875 9
Q ss_pred cCCCCCcEEecccccccCCCCCCCCCcc--cccccccccCCCEEEecCCC-cccccc-cccccccccccccccccccCCc
Q 039475 113 ENLIHLRYLKLSAVEELSETCYCPSLKR--LPQGRGKLINLRHLIFDKDY-LAYMAN-GFERLTSLRTLSGFTVARVGGK 188 (286)
Q Consensus 113 ~~L~~Lr~L~L~~~~~LP~~~~~~~l~~--LP~~i~~L~~L~~L~l~~~~-~~~lP~-~i~~L~~L~~L~~~~~~~~~~~ 188 (286)
+++++|++|++++ +.+.. +|..++++++|++|++++|. +..+|. .++++++|++|++..+...
T Consensus 95 ~~l~~L~~L~Ls~----------n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~--- 161 (549)
T 2z81_A 95 GPLSSLKYLNLMG----------NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR--- 161 (549)
T ss_dssp TTCTTCCEEECTT----------CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC---
T ss_pred ccCCCCcEEECCC----------CcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc---
Confidence 9999999999986 55664 46778899999999998887 567764 5899999999988776544
Q ss_pred cCCCCCCcccccCcccccceeEEcccCCcccchhhhh-hcCCCCCCceEEEEeCCCC
Q 039475 189 YSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINA-HLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 189 ~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~ 244 (286)
+.....++++++|+ .|.+..... ...+. .+..+++|+.|+++.|...
T Consensus 162 ----~~~~~~l~~l~~L~-~L~l~~n~~----~~~~~~~~~~l~~L~~L~L~~n~l~ 209 (549)
T 2z81_A 162 ----NYQSQSLKSIRDIH-HLTLHLSES----AFLLEIFADILSSVRYLELRDTNLA 209 (549)
T ss_dssp ----EECTTTTTTCSEEE-EEEEECSBS----TTHHHHHHHSTTTBSEEEEESCBCT
T ss_pred ----ccChhhhhccccCc-eEecccCcc----cccchhhHhhcccccEEEccCCccc
Confidence 33445566677676 677664321 11122 2345777888888877765
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.58 E-value=4e-14 Score=125.69 Aligned_cols=132 Identities=21% Similarity=0.201 Sum_probs=77.9
Q ss_pred cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475 36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL 115 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L 115 (286)
..+++++.+..+....++ .+..+++|++|++.++.... ++. |..+++|++|++++ +.+..+| .++++
T Consensus 43 l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~------~~~-~~~l~~L~~L~L~~----n~i~~~~-~~~~l 109 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITD------ISP-LSNLVKLTNLYIGT----NKITDIS-ALQNL 109 (347)
T ss_dssp HTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCC------CGG-GTTCTTCCEEECCS----SCCCCCG-GGTTC
T ss_pred cccccEEEEeCCccccch-hhhhcCCccEEEccCCcccc------chh-hhcCCcCCEEEccC----CcccCch-HHcCC
Confidence 355677777766665554 36667777777777765443 333 66777777777777 6666654 57777
Q ss_pred CCCcEEeccc--ccccCCC-C----------CCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccc
Q 039475 116 IHLRYLKLSA--VEELSET-C----------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTV 182 (286)
Q Consensus 116 ~~Lr~L~L~~--~~~LP~~-~----------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~ 182 (286)
++|++|++++ +..+|.. . +|..+..++ .++++++|++|++.+|.+..++. ++.+++|++|++..+
T Consensus 110 ~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN 187 (347)
T ss_dssp TTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS
T ss_pred CcCCEEECcCCcccCchhhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC
Confidence 7777777766 4444322 1 222233333 35566666666666665555543 556666666655544
No 33
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.1e-14 Score=129.96 Aligned_cols=172 Identities=19% Similarity=0.146 Sum_probs=135.9
Q ss_pred EEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccC-ccccCCCCCcE
Q 039475 42 LTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIP-KGLENLIHLRY 120 (286)
Q Consensus 42 ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP-~~i~~L~~Lr~ 120 (286)
.....+....+|..+. ++|++|++.++..... .+..|.++++|++|++++ +.+..++ ..++++.+|++
T Consensus 36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYI-----SNSDLQRCVNLQALVLTS----NGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECCSTTCSSCCTTCC--TTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECTT----SCCCEECTTTTTTCTTCCE
T ss_pred eeCCCCCccccccccc--ccCcEEECCCCcCccc-----CHHHhccCCCCCEEECCC----CccCccCHhhcCCCCCCCE
Confidence 5566666777887664 6999999999986542 455789999999999999 9988775 57999999999
Q ss_pred EecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCcccccc--cccccccccccccccccccCCccCCCCCCcc
Q 039475 121 LKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYMAN--GFERLTSLRTLSGFTVARVGGKYSSEACNLE 197 (286)
Q Consensus 121 L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~lP~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~ 197 (286)
|++++ +.++.+|.. ++++++|++|++++|.+..+|. .++++++|++|++..+... ......
T Consensus 105 L~Ls~----------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~------~~~~~~ 168 (353)
T 2z80_A 105 LDLSY----------NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF------TKIQRK 168 (353)
T ss_dssp EECCS----------SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC------CEECTT
T ss_pred EECCC----------CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccc------cccCHH
Confidence 99996 778899876 8999999999999999999987 5999999999998876322 122334
Q ss_pred cccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 198 GLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 198 ~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
.++.+++|+ .|.+.+..- ....+..+..+++|++|+++.|..+
T Consensus 169 ~~~~l~~L~-~L~l~~n~l---~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 169 DFAGLTFLE-ELEIDASDL---QSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTTTCCEEE-EEEEEETTC---CEECTTTTTTCSEEEEEEEECSCST
T ss_pred HccCCCCCC-EEECCCCCc---CccCHHHHhccccCCeecCCCCccc
Confidence 567777777 787764321 2334567888889999999998875
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=4.7e-15 Score=141.59 Aligned_cols=127 Identities=19% Similarity=0.185 Sum_probs=87.4
Q ss_pred CCceEEEeecCCCCCCchh-hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cccC
Q 039475 37 EKLRHLTLMLGLPTKFPVS-IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLEN 114 (286)
Q Consensus 37 ~~~r~ls~~~~~~~~~~~~-~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~ 114 (286)
.+.+.+.+..+....+|+. +..+++|++|++.++..... .+..|..++.|++|+|++ |.+..+|. .+++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~ 121 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-----DTYAFAYAHTIQKLYMGF----NAIRYLPPHVFQN 121 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEE-----CTTTTTTCTTCCEEECCS----SCCCCCCTTTTTT
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCC-----ChHHhcCCCCCCEEECCC----CcCCCCCHHHHcC
Confidence 4568888888777666655 57799999999999876542 556788999999999999 88887765 4699
Q ss_pred CCCCcEEecccccccCCCCCCCCCccccccc-ccccCCCEEEecCCCcccccc-cccccccccccccccc
Q 039475 115 LIHLRYLKLSAVEELSETCYCPSLKRLPQGR-GKLINLRHLIFDKDYLAYMAN-GFERLTSLRTLSGFTV 182 (286)
Q Consensus 115 L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i-~~L~~L~~L~l~~~~~~~lP~-~i~~L~~L~~L~~~~~ 182 (286)
+++|++|+|++ +.+..+|..+ +++++|++|++++|.+..+|+ .|+.+++|++|++..+
T Consensus 122 l~~L~~L~L~~----------n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 122 VPLLTVLVLER----------NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp CTTCCEEECCS----------SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS
T ss_pred CCCCCEEEeeC----------CCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC
Confidence 99999999987 3444554442 555555555555555554433 2555555555554443
No 35
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.58 E-value=1.5e-14 Score=132.90 Aligned_cols=189 Identities=20% Similarity=0.211 Sum_probs=146.8
Q ss_pred cCCceEEEeecCCCCCCc-hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-ccc
Q 039475 36 QEKLRHLTLMLGLPTKFP-VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLE 113 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~ 113 (286)
..+++.|.+..+.+..++ ..|..+++|++|++++|..... .+..|..+++|++|+|++ |.+..+|. .+.
T Consensus 87 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~----N~i~~~~~~~~~ 157 (440)
T 3zyj_A 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-----PNGAFVYLSKLKELWLRN----NPIESIPSYAFN 157 (440)
T ss_dssp CSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-----CTTTSCSCSSCCEEECCS----CCCCEECTTTTT
T ss_pred CCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-----CHhHhhccccCceeeCCC----CcccccCHHHhh
Confidence 356899999988875554 6788999999999999976532 556789999999999999 99888876 778
Q ss_pred CCCCCcEEeccc---ccccCCC-C-----------CCCCCcccccccccccCCCEEEecCCCcccc-ccccccccccccc
Q 039475 114 NLIHLRYLKLSA---VEELSET-C-----------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYM-ANGFERLTSLRTL 177 (286)
Q Consensus 114 ~L~~Lr~L~L~~---~~~LP~~-~-----------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~l-P~~i~~L~~L~~L 177 (286)
++.+|++|++++ +..+|.. . ..+.++.+| .+..+++|++|++++|.+..+ |..|..+++|++|
T Consensus 158 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 236 (440)
T 3zyj_A 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236 (440)
T ss_dssp TCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred hCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEE
Confidence 999999999986 6667664 3 234466777 588999999999999999977 4569999999999
Q ss_pred ccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475 178 SGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED 245 (286)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 245 (286)
++..+... ......+.++++|+ .|.+.+..- .......+..+++|+.|+|+.|...-
T Consensus 237 ~L~~n~l~-------~~~~~~~~~l~~L~-~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 237 WMIQSQIQ-------VIERNAFDNLQSLV-EINLAHNNL---TLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp ECTTCCCC-------EECTTSSTTCTTCC-EEECTTSCC---CCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred ECCCCcee-------EEChhhhcCCCCCC-EEECCCCCC---CccChhHhccccCCCEEEcCCCCccC
Confidence 98877654 33445677777777 788875421 22233457888999999999998643
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.58 E-value=5.7e-15 Score=133.52 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=57.6
Q ss_pred CCceEEEeecCCCCCCc-hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccc-cC
Q 039475 37 EKLRHLTLMLGLPTKFP-VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGL-EN 114 (286)
Q Consensus 37 ~~~r~ls~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i-~~ 114 (286)
.+++.+.+..+.+..++ ..+..+++|++|++.++..... .|..|.++++|++|++++ +.+..+|..+ ++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~----n~l~~l~~~~~~~ 139 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-----PPHVFQNVPLLTVLVLER----NDLSSLPRGIFHN 139 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCS----SCCCCCCTTTTTT
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-----CHHHhcCCCCCCEEECCC----CccCcCCHHHhcC
Confidence 45777888777765544 3677788888888887765432 556677788888888888 7777777664 77
Q ss_pred CCCCcEEeccc
Q 039475 115 LIHLRYLKLSA 125 (286)
Q Consensus 115 L~~Lr~L~L~~ 125 (286)
+++|++|++++
T Consensus 140 l~~L~~L~L~~ 150 (390)
T 3o6n_A 140 TPKLTTLSMSN 150 (390)
T ss_dssp CTTCCEEECCS
T ss_pred CCCCcEEECCC
Confidence 77888888776
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=5.6e-15 Score=141.08 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=59.2
Q ss_pred CCceEEEeecCCCCCCc-hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccc-cC
Q 039475 37 EKLRHLTLMLGLPTKFP-VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGL-EN 114 (286)
Q Consensus 37 ~~~r~ls~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i-~~ 114 (286)
..++.|.+..+.+..++ ..+..+++|++|++++|..... .|..|++++.|++|+|++ |.+..+|..+ ++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~----n~l~~l~~~~~~~ 145 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-----PPHVFQNVPLLTVLVLER----NDLSSLPRGIFHN 145 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCS----SCCCCCCTTTTTT
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC-----CHHHHcCCCCCCEEEeeC----CCCCCCCHHHhcc
Confidence 46788888877775544 3677888888888888775442 566677888888888888 7777777764 77
Q ss_pred CCCCcEEeccc
Q 039475 115 LIHLRYLKLSA 125 (286)
Q Consensus 115 L~~Lr~L~L~~ 125 (286)
+.+|++|+|++
T Consensus 146 l~~L~~L~Ls~ 156 (597)
T 3oja_B 146 TPKLTTLSMSN 156 (597)
T ss_dssp CTTCCEEECCS
T ss_pred CCCCCEEEeeC
Confidence 88888888876
No 38
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.58 E-value=1.2e-14 Score=133.60 Aligned_cols=185 Identities=18% Similarity=0.221 Sum_probs=136.1
Q ss_pred cccCCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-Ccc
Q 039475 34 SCQEKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKG 111 (286)
Q Consensus 34 ~~~~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~ 111 (286)
..+.+++++.+..+.+..+ |..+.++++|++|++.++..... +.+..|.++++|++|+|++ +.+..+ |..
T Consensus 27 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~----i~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~ 98 (455)
T 3v47_A 27 ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV----IRNNTFRGLSSLIILKLDY----NQFLQLETGA 98 (455)
T ss_dssp CCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCE----ECTTTTTTCTTCCEEECTT----CTTCEECTTT
T ss_pred CCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccce----ECcccccccccCCEEeCCC----CccCccChhh
Confidence 3567899999999888655 67789999999999999876432 1467789999999999999 998866 789
Q ss_pred ccCCCCCcEEecccccccCCCCCCCCCcc-cccc--cccccCCCEEEecCCCcccc-ccc-ccccccccccccccccccC
Q 039475 112 LENLIHLRYLKLSAVEELSETCYCPSLKR-LPQG--RGKLINLRHLIFDKDYLAYM-ANG-FERLTSLRTLSGFTVARVG 186 (286)
Q Consensus 112 i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~-LP~~--i~~L~~L~~L~l~~~~~~~l-P~~-i~~L~~L~~L~~~~~~~~~ 186 (286)
++++++|++|++++ +.+.. +|.. ++++++|++|++++|.+..+ |.. ++++++|++|++..+...
T Consensus 99 ~~~l~~L~~L~L~~----------n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~- 167 (455)
T 3v47_A 99 FNGLANLEVLTLTQ----------CNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK- 167 (455)
T ss_dssp TTTCTTCCEEECTT----------SCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS-
T ss_pred ccCcccCCEEeCCC----------CCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc-
Confidence 99999999999996 45654 4554 89999999999999999877 555 899999999998877654
Q ss_pred CccCCCCCCcccccCc--ccccceeEEcccCCccc-----chhhhhhcCCCCCCceEEEEeCCCC
Q 039475 187 GKYSSEACNLEGLRNL--NHLRQFLRICGLGNLQM-----RLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 187 ~~~~~~~~~~~~l~~L--~~L~~~L~i~~l~~~~~-----~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
+.....+..+ .+|+ .|.+.+..-... .......+..+++|+.|+++.|...
T Consensus 168 ------~~~~~~l~~l~~~~L~-~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 225 (455)
T 3v47_A 168 ------SICEEDLLNFQGKHFT-LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225 (455)
T ss_dssp ------CCCTTTSGGGTTCEEE-EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCC
T ss_pred ------ccChhhhhcccccccc-ccccccCcccccchhhccccccccccccceeeeEecCCCccc
Confidence 2333344443 3444 455543321110 1112233456678889999888776
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.58 E-value=8.7e-15 Score=129.34 Aligned_cols=136 Identities=18% Similarity=0.174 Sum_probs=104.8
Q ss_pred CceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-CccccCCC
Q 039475 38 KLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKGLENLI 116 (286)
Q Consensus 38 ~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i~~L~ 116 (286)
..+.+.+..+....+|..+ .+.|+.|++.++..... .+..|.++++|++|++++ +.+..+ |..+++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~l~ 100 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEI-----KDGDFKNLKNLHTLILIN----NKISKISPGAFAPLV 100 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCB-----CTTTTTTCTTCCEEECCS----SCCCCBCTTTTTTCT
T ss_pred CCeEEEecCCCccccCccC--CCCCeEEECCCCcCCEe-----ChhhhccCCCCCEEECCC----CcCCeeCHHHhcCCC
Confidence 5677888777777777665 37899999999986542 555789999999999999 998877 88999999
Q ss_pred CCcEEeccc--ccccCCC-C--------CCCCCccccc-ccccccCCCEEEecCCCcc---ccccccccccccccccccc
Q 039475 117 HLRYLKLSA--VEELSET-C--------YCPSLKRLPQ-GRGKLINLRHLIFDKDYLA---YMANGFERLTSLRTLSGFT 181 (286)
Q Consensus 117 ~Lr~L~L~~--~~~LP~~-~--------~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~---~lP~~i~~L~~L~~L~~~~ 181 (286)
+|++|++++ ++.+|.. + ..+.+..+|. .++++++|++|++++|.+. ..|..++++++|++|++..
T Consensus 101 ~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 101 KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp TCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred CCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence 999999998 7777766 4 2334555554 4688888888888888775 2345588888888887765
Q ss_pred ccc
Q 039475 182 VAR 184 (286)
Q Consensus 182 ~~~ 184 (286)
+..
T Consensus 181 n~l 183 (330)
T 1xku_A 181 TNI 183 (330)
T ss_dssp SCC
T ss_pred Ccc
Confidence 543
No 40
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.58 E-value=1.8e-14 Score=132.92 Aligned_cols=189 Identities=20% Similarity=0.195 Sum_probs=146.9
Q ss_pred cCCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-ccc
Q 039475 36 QEKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLE 113 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~ 113 (286)
..+++.|.+..+.+..+ +..+..+++|++|++++|..... .+..|.+++.|++|+|++ |.+..+|. .++
T Consensus 98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~----N~l~~~~~~~~~ 168 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-----PSGAFEYLSKLRELWLRN----NPIESIPSYAFN 168 (452)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-----CTTTSSSCTTCCEEECCS----CCCCEECTTTTT
T ss_pred CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-----ChhhhcccCCCCEEECCC----CCcceeCHhHHh
Confidence 35689999999887554 46788999999999999986542 566789999999999999 99988876 678
Q ss_pred CCCCCcEEeccc---ccccCCC-C-----------CCCCCcccccccccccCCCEEEecCCCcccc-ccccccccccccc
Q 039475 114 NLIHLRYLKLSA---VEELSET-C-----------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYM-ANGFERLTSLRTL 177 (286)
Q Consensus 114 ~L~~Lr~L~L~~---~~~LP~~-~-----------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~l-P~~i~~L~~L~~L 177 (286)
++.+|++|++++ +..+|.. . ..+.+..+| .+..+++|++|++++|.+..+ |..|+.+++|++|
T Consensus 169 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 247 (452)
T 3zyi_A 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247 (452)
T ss_dssp TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEE
T ss_pred cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCCEE
Confidence 999999999986 6677765 3 234466676 588999999999999999977 5569999999999
Q ss_pred ccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475 178 SGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED 245 (286)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 245 (286)
++..+... ......+..+++|+ .|.+.+..- .......+..+++|+.|+|+.|....
T Consensus 248 ~L~~n~l~-------~~~~~~~~~l~~L~-~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 248 WVMNSQVS-------LIERNAFDGLASLV-ELNLAHNNL---SSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp ECTTSCCC-------EECTTTTTTCTTCC-EEECCSSCC---SCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred EeCCCcCc-------eECHHHhcCCCCCC-EEECCCCcC---CccChHHhccccCCCEEEccCCCcCC
Confidence 99877654 33445567777777 788875421 22223457788999999999997643
No 41
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=2.9e-14 Score=121.32 Aligned_cols=153 Identities=27% Similarity=0.356 Sum_probs=126.8
Q ss_pred ccCCceEEEeecCCCCCCc-hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cc
Q 039475 35 CQEKLRHLTLMLGLPTKFP-VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GL 112 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i 112 (286)
++..++.+.+..+.+..++ ..+..+++|++|++++|..... .+..|.+++.|++|++++ +.+..+|. .+
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~ 103 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-----SAGVFDDLTELGTLGLAN----NQLASLPLGVF 103 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-----CTTTTTTCTTCCEEECTT----SCCCCCCTTTT
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-----CHhHhccCCcCCEEECCC----CcccccChhHh
Confidence 4677999999998886554 4688999999999999987543 667789999999999999 99998875 56
Q ss_pred cCCCCCcEEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCccccccc-ccccccccccccccccccCCccC
Q 039475 113 ENLIHLRYLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARVGGKYS 190 (286)
Q Consensus 113 ~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~ 190 (286)
+.+.+|++|+|++ +.++.+|.. +.++++|++|++++|.+..+|.+ |+.+++|++|++..+...
T Consensus 104 ~~l~~L~~L~L~~----------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~----- 168 (251)
T 3m19_A 104 DHLTQLDKLYLGG----------NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ----- 168 (251)
T ss_dssp TTCTTCCEEECCS----------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-----
T ss_pred cccCCCCEEEcCC----------CcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-----
Confidence 9999999999996 778888876 58899999999999999998874 999999999999887654
Q ss_pred CCCCCcccccCcccccceeEEccc
Q 039475 191 SEACNLEGLRNLNHLRQFLRICGL 214 (286)
Q Consensus 191 ~~~~~~~~l~~L~~L~~~L~i~~l 214 (286)
......+..+++|+ .|.+.+.
T Consensus 169 --~~~~~~~~~l~~L~-~L~l~~N 189 (251)
T 3m19_A 169 --SVPHGAFDRLGKLQ-TITLFGN 189 (251)
T ss_dssp --CCCTTTTTTCTTCC-EEECCSC
T ss_pred --ccCHHHHhCCCCCC-EEEeeCC
Confidence 33334567777777 7887754
No 42
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.57 E-value=1.1e-14 Score=138.88 Aligned_cols=79 Identities=27% Similarity=0.275 Sum_probs=36.7
Q ss_pred CceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCc-ccCc-cccCC
Q 039475 38 KLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTI-EIPK-GLENL 115 (286)
Q Consensus 38 ~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~-~lP~-~i~~L 115 (286)
+.+.+.+..+....+|..+..+++|++|++.++..... .|..+.+++.|++|++++ +.+. .+|. .++++
T Consensus 279 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~----n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 279 GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL-----CQISASNFPSLTHLSIKG----NTKRLELGTGCLENL 349 (606)
T ss_dssp TCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG-----GGGCGGGCTTCSEEECCS----CSSCCBCCSSTTTTC
T ss_pred CCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC-----chhhhhccCcCCEEECCC----CCcccccchhhhhcc
Confidence 44555555555545555555555555555555543321 233344444444444444 4332 3332 24444
Q ss_pred CCCcEEeccc
Q 039475 116 IHLRYLKLSA 125 (286)
Q Consensus 116 ~~Lr~L~L~~ 125 (286)
++|++|++++
T Consensus 350 ~~L~~L~l~~ 359 (606)
T 3t6q_A 350 ENLRELDLSH 359 (606)
T ss_dssp TTCCEEECCS
T ss_pred CcCCEEECCC
Confidence 4444444444
No 43
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.57 E-value=7.4e-15 Score=139.97 Aligned_cols=140 Identities=12% Similarity=0.081 Sum_probs=106.1
Q ss_pred cccCCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-Ccc
Q 039475 34 SCQEKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKG 111 (286)
Q Consensus 34 ~~~~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~ 111 (286)
.++..++++.+..+.+..+ |..+.++++|++|+++++..... .|..|.++++|++|+|++ |.+..+ |..
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~ 100 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI-----HEDTFQSQHRLDTLVLTA----NPLIFMAETA 100 (606)
T ss_dssp TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEE-----CTTTTTTCTTCCEEECTT----CCCSEECTTT
T ss_pred CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCcccee-----ChhhccCccccCeeeCCC----CcccccChhh
Confidence 3567899999999988665 66889999999999999976542 688899999999999999 988765 778
Q ss_pred ccCCCCCcEEeccc--ccccCC-C-CCCC----------CCcccc-cccccccCCCEEEecCCCccccc-cccccccccc
Q 039475 112 LENLIHLRYLKLSA--VEELSE-T-CYCP----------SLKRLP-QGRGKLINLRHLIFDKDYLAYMA-NGFERLTSLR 175 (286)
Q Consensus 112 i~~L~~Lr~L~L~~--~~~LP~-~-~~~~----------~l~~LP-~~i~~L~~L~~L~l~~~~~~~lP-~~i~~L~~L~ 175 (286)
++++++|++|++++ +..++. . ..+. .+..++ ..+..+++|++|++++|.+..++ ..++.+++|+
T Consensus 101 ~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred hcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence 99999999999998 666533 3 3322 344442 23444888888888888888664 4488888887
Q ss_pred --ccccccc
Q 039475 176 --TLSGFTV 182 (286)
Q Consensus 176 --~L~~~~~ 182 (286)
+|++..+
T Consensus 181 ~l~L~l~~n 189 (606)
T 3t6q_A 181 NLSLNLNGN 189 (606)
T ss_dssp SEEEECTTC
T ss_pred eeEEecCCC
Confidence 5554443
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.57 E-value=7.3e-15 Score=136.19 Aligned_cols=188 Identities=18% Similarity=0.139 Sum_probs=105.8
Q ss_pred CCceEEEeecCCCCCCchh-hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-CccccC
Q 039475 37 EKLRHLTLMLGLPTKFPVS-IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKGLEN 114 (286)
Q Consensus 37 ~~~r~ls~~~~~~~~~~~~-~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i~~ 114 (286)
.+.++|.+..+....++.. +..+++|++|++++|..... .+..|.++++|++|++++ +.+..+ |..+++
T Consensus 80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~l~~----n~l~~~~~~~~~~ 150 (477)
T 2id5_A 80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-----LDYMFQDLYNLKSLEVGD----NDLVYISHRAFSG 150 (477)
T ss_dssp TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEEECC----TTCCEECTTSSTT
T ss_pred ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC-----ChhHccccccCCEEECCC----CccceeChhhccC
Confidence 4577777777766555543 56677777777777654322 344455555555555555 544433 224444
Q ss_pred CCCCcEEeccc--ccccC------------------------CC-C------------CCCCCcccccccccccCCCEEE
Q 039475 115 LIHLRYLKLSA--VEELS------------------------ET-C------------YCPSLKRLPQGRGKLINLRHLI 155 (286)
Q Consensus 115 L~~Lr~L~L~~--~~~LP------------------------~~-~------------~~~~l~~LP~~i~~L~~L~~L~ 155 (286)
+.+|++|++++ +..+| .. . +|..+..+|..+....+|++|+
T Consensus 151 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 230 (477)
T 2id5_A 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230 (477)
T ss_dssp CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEE
T ss_pred CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEE
Confidence 44555554444 33333 22 1 1222334444444445677777
Q ss_pred ecCCCcccccc-cccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCc
Q 039475 156 FDKDYLAYMAN-GFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLV 234 (286)
Q Consensus 156 l~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~ 234 (286)
+++|.+..+|. .++.+++|++|++..+... ......+..+++|+ .|.+.+..- ....+..+..+++|+
T Consensus 231 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~-~L~L~~n~l---~~~~~~~~~~l~~L~ 299 (477)
T 2id5_A 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-------TIEGSMLHELLRLQ-EIQLVGGQL---AVVEPYAFRGLNYLR 299 (477)
T ss_dssp EESSCCCSCCHHHHTTCTTCCEEECCSSCCC-------EECTTSCTTCTTCC-EEECCSSCC---SEECTTTBTTCTTCC
T ss_pred CcCCcccccCHHHhcCccccCeeECCCCcCC-------ccChhhccccccCC-EEECCCCcc---ceECHHHhcCcccCC
Confidence 77777777764 3777788888877766433 22233455566666 566653311 223345667777777
Q ss_pred eEEEEeCCCC
Q 039475 235 HLTLDFDKGE 244 (286)
Q Consensus 235 ~L~L~~~~~~ 244 (286)
.|+|+.|..+
T Consensus 300 ~L~L~~N~l~ 309 (477)
T 2id5_A 300 VLNVSGNQLT 309 (477)
T ss_dssp EEECCSSCCS
T ss_pred EEECCCCcCc
Confidence 7887777665
No 45
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.57 E-value=1.6e-14 Score=139.62 Aligned_cols=140 Identities=15% Similarity=0.224 Sum_probs=105.7
Q ss_pred ccCCceEEEeecCCCCCCch-hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cc
Q 039475 35 CQEKLRHLTLMLGLPTKFPV-SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GL 112 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i 112 (286)
++.+++++.+..+.+..+++ .+.++++|++|+++++..... .|..|.+++.|++|+|++ +.+..+|. .|
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~----n~l~~l~~~~~ 93 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL-----EPELCQKLPMLKVLNLQH----NELSQLSDKTF 93 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC-----CTTHHHHCTTCCEEECCS----SCCCCCCTTTT
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc-----CHHHHhcccCcCEEECCC----CccCccChhhh
Confidence 46789999999998866654 589999999999999876543 688899999999999999 99999987 59
Q ss_pred cCCCCCcEEeccc--ccccCCC--CCCCCCc----------c-cccccccccCCCEEEecCCCccccccc-cc--ccccc
Q 039475 113 ENLIHLRYLKLSA--VEELSET--CYCPSLK----------R-LPQGRGKLINLRHLIFDKDYLAYMANG-FE--RLTSL 174 (286)
Q Consensus 113 ~~L~~Lr~L~L~~--~~~LP~~--~~~~~l~----------~-LP~~i~~L~~L~~L~l~~~~~~~lP~~-i~--~L~~L 174 (286)
+++.+|++|++++ +..+|.. +.+.+++ . .|..++++++|++|++++|.+..++.. ++ .+++|
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccc
Confidence 9999999999997 6666643 3333332 2 245567777788888777777766543 33 44677
Q ss_pred ccccccccc
Q 039475 175 RTLSGFTVA 183 (286)
Q Consensus 175 ~~L~~~~~~ 183 (286)
++|++..+.
T Consensus 174 ~~L~L~~n~ 182 (680)
T 1ziw_A 174 KKLELSSNQ 182 (680)
T ss_dssp SEEECTTCC
T ss_pred cEEECCCCc
Confidence 777665553
No 46
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=1.3e-14 Score=143.52 Aligned_cols=82 Identities=22% Similarity=0.277 Sum_probs=47.9
Q ss_pred CceEEEeecCCCCCCch--hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475 38 KLRHLTLMLGLPTKFPV--SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL 115 (286)
Q Consensus 38 ~~r~ls~~~~~~~~~~~--~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L 115 (286)
++++|.+..+.+..+|. .+.++++|+.|++++|.... +| .|..++.|++|+|++ |.+..+|..++++
T Consensus 549 ~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~------lp-~~~~L~~L~~L~Ls~----N~l~~lp~~l~~l 617 (876)
T 4ecn_A 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH------LE-AFGTNVKLTDLKLDY----NQIEEIPEDFCAF 617 (876)
T ss_dssp TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCB------CC-CCCTTSEESEEECCS----SCCSCCCTTSCEE
T ss_pred CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCccc------ch-hhcCCCcceEEECcC----CccccchHHHhhc
Confidence 56666666666555565 56666666666666665441 44 455556666666666 5555556556555
Q ss_pred CC-CcEEeccc--ccccC
Q 039475 116 IH-LRYLKLSA--VEELS 130 (286)
Q Consensus 116 ~~-Lr~L~L~~--~~~LP 130 (286)
.+ |++|+|++ +..+|
T Consensus 618 ~~~L~~L~Ls~N~L~~lp 635 (876)
T 4ecn_A 618 TDQVEGLGFSHNKLKYIP 635 (876)
T ss_dssp CTTCCEEECCSSCCCSCC
T ss_pred cccCCEEECcCCCCCcCc
Confidence 55 55555555 44444
No 47
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=9e-14 Score=121.08 Aligned_cols=170 Identities=19% Similarity=0.164 Sum_probs=137.3
Q ss_pred cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475 36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL 115 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L 115 (286)
...++.+.+..+.+..++ .+..+++|++|++++|.... ++. +.++++|++|++++ |.+..+|. ++.+
T Consensus 45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~------~~~-l~~l~~L~~L~l~~----n~l~~~~~-l~~l 111 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD------IKP-LANLKNLGWLFLDE----NKVKDLSS-LKDL 111 (291)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC------CGG-GTTCTTCCEEECCS----SCCCCGGG-GTTC
T ss_pred cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCC------Ccc-cccCCCCCEEECCC----CcCCCChh-hccC
Confidence 456899999988887664 48889999999999998654 444 88999999999999 99988774 9999
Q ss_pred CCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCC
Q 039475 116 IHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACN 195 (286)
Q Consensus 116 ~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~ 195 (286)
.+|++|++++ +.+..+| .++.+++|++|++++|.+..+ ..++.+++|++|++..+... .
T Consensus 112 ~~L~~L~L~~----------n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~---------~ 170 (291)
T 1h6t_A 112 KKLKSLSLEH----------NGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQIS---------D 170 (291)
T ss_dssp TTCCEEECTT----------SCCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCC---------C
T ss_pred CCCCEEECCC----------CcCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccc---------c
Confidence 9999999986 6687775 689999999999999999988 57999999999999877544 2
Q ss_pred cccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475 196 LEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED 245 (286)
Q Consensus 196 ~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 245 (286)
+..+..+++|+ .|.+.+..- .. + ..+..+++|+.|+++.|....
T Consensus 171 ~~~l~~l~~L~-~L~L~~N~i-~~---l-~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 171 IVPLAGLTKLQ-NLYLSKNHI-SD---L-RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CGGGTTCTTCC-EEECCSSCC-CB---C-GGGTTCTTCSEEEEEEEEEEC
T ss_pred chhhcCCCccC-EEECCCCcC-CC---C-hhhccCCCCCEEECcCCcccC
Confidence 22377777777 788775411 11 2 348889999999999997653
No 48
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=1e-14 Score=144.44 Aligned_cols=138 Identities=16% Similarity=0.183 Sum_probs=97.6
Q ss_pred cCCceEEEeecCCCCC------------------Cchhhh--cCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEE
Q 039475 36 QEKLRHLTLMLGLPTK------------------FPVSIF--DAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALK 95 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~------------------~~~~~~--~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~ 95 (286)
..+.+.|.+..+.+.. +|..+. ++++|++|++.+|..... +|..|.+++.|++|+
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~-----iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ-----LPDFLYDLPELQSLN 521 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS-----CCGGGGGCSSCCEEE
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc-----ChHHHhCCCCCCEEE
Confidence 3567888888888765 787776 888999999988875543 777888888888888
Q ss_pred eecccCCcc-Ccc--cCccccCCC-------CCcEEeccc--ccccCC--C-C----------CCCCCcccccccccccC
Q 039475 96 IEELWYGDQ-TIE--IPKGLENLI-------HLRYLKLSA--VEELSE--T-C----------YCPSLKRLPQGRGKLIN 150 (286)
Q Consensus 96 L~~~~~~~~-i~~--lP~~i~~L~-------~Lr~L~L~~--~~~LP~--~-~----------~~~~l~~LP~~i~~L~~ 150 (286)
|++ |. +.. +|..++++. +|++|++++ +..+|. . + ..+.+..+| .++++++
T Consensus 522 Ls~----N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~ 596 (876)
T 4ecn_A 522 IAC----NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVK 596 (876)
T ss_dssp CTT----CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSE
T ss_pred CcC----CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCc
Confidence 888 76 663 777777666 888888887 556666 3 3 122344566 6666666
Q ss_pred CCEEEecCCCccccccccccccc-cccccccccc
Q 039475 151 LRHLIFDKDYLAYMANGFERLTS-LRTLSGFTVA 183 (286)
Q Consensus 151 L~~L~l~~~~~~~lP~~i~~L~~-L~~L~~~~~~ 183 (286)
|++|++++|.+..+|.+++++++ |++|++..+.
T Consensus 597 L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp ESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC
T ss_pred ceEEECcCCccccchHHHhhccccCCEEECcCCC
Confidence 66666666666666666666666 6666665554
No 49
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.56 E-value=4.5e-14 Score=132.22 Aligned_cols=78 Identities=21% Similarity=0.153 Sum_probs=67.8
Q ss_pred cCCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcc--cCccc
Q 039475 36 QEKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIE--IPKGL 112 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~--lP~~i 112 (286)
..+.+++.+..+.+..+ |..+..+++|++|++++|.... +|.. .++.|++|++++ |.+.. +|..+
T Consensus 44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------lp~~--~l~~L~~L~L~~----N~l~~~~~p~~~ 111 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK------ISCH--PTVNLKHLDLSF----NAFDALPICKEF 111 (520)
T ss_dssp CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE------EECC--CCCCCSEEECCS----SCCSSCCCCGGG
T ss_pred cccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee------cCcc--ccCCccEEeccC----Cccccccchhhh
Confidence 46789999999988665 6789999999999999998653 5655 899999999999 99875 67899
Q ss_pred cCCCCCcEEeccc
Q 039475 113 ENLIHLRYLKLSA 125 (286)
Q Consensus 113 ~~L~~Lr~L~L~~ 125 (286)
+++++|++|++++
T Consensus 112 ~~l~~L~~L~L~~ 124 (520)
T 2z7x_B 112 GNMSQLKFLGLST 124 (520)
T ss_dssp GGCTTCCEEEEEE
T ss_pred ccCCcceEEEecC
Confidence 9999999999987
No 50
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.56 E-value=1.6e-14 Score=136.05 Aligned_cols=171 Identities=22% Similarity=0.205 Sum_probs=135.5
Q ss_pred EeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccC-ccccCCCCCcEE
Q 039475 43 TLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIP-KGLENLIHLRYL 121 (286)
Q Consensus 43 s~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP-~~i~~L~~Lr~L 121 (286)
....+....+|..+. ++|++|+++++..... .|..|.++++|++|++++ +.+..+| ..++++.+|++|
T Consensus 11 ~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~----n~i~~~~~~~~~~l~~L~~L 79 (549)
T 2z81_A 11 DGRSRSFTSIPSGLT--AAMKSLDLSFNKITYI-----GHGDLRACANLQVLILKS----SRINTIEGDAFYSLGSLEHL 79 (549)
T ss_dssp ECTTSCCSSCCSCCC--TTCCEEECCSSCCCEE-----CSSTTSSCTTCCEEECTT----SCCCEECTTTTTTCTTCCEE
T ss_pred ECCCCccccccccCC--CCccEEECcCCccCcc-----ChhhhhcCCcccEEECCC----CCcCccChhhccccccCCEE
Confidence 444455566777653 7999999999986542 567889999999999999 9988776 689999999999
Q ss_pred ecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCccc--ccccccccccccccccccccccCCccCCCCCCccc
Q 039475 122 KLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAY--MANGFERLTSLRTLSGFTVARVGGKYSSEACNLEG 198 (286)
Q Consensus 122 ~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~--lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~ 198 (286)
++++ +.+..+|.. ++++++|++|++++|.+.. +|..++++++|++|++..+... .......
T Consensus 80 ~Ls~----------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~------~~~~~~~ 143 (549)
T 2z81_A 80 DLSD----------NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF------SEIRRID 143 (549)
T ss_dssp ECTT----------SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC------CEECTTT
T ss_pred ECCC----------CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccc------cccCHhh
Confidence 9996 678888765 9999999999999999985 4677999999999998877532 1222346
Q ss_pred ccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 199 LRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 199 l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
+.++++|+ .|.+.+..- ....+..+..+++|++|++++|...
T Consensus 144 ~~~l~~L~-~L~L~~n~l---~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 144 FAGLTSLN-ELEIKALSL---RNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTTCCEEE-EEEEEETTC---CEECTTTTTTCSEEEEEEEECSBST
T ss_pred hhcccccC-eeeccCCcc---cccChhhhhccccCceEecccCccc
Confidence 77778787 788875322 3345677889999999999999875
No 51
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.55 E-value=3.8e-14 Score=134.20 Aligned_cols=124 Identities=19% Similarity=0.158 Sum_probs=95.2
Q ss_pred ceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-CccccCCCC
Q 039475 39 LRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKGLENLIH 117 (286)
Q Consensus 39 ~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i~~L~~ 117 (286)
.+++.+..+....+|..+. ++|++|++++|..... .+..|.++++|++|+|++ |.+..+ |..++++++
T Consensus 33 ~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~-----~~~~~~~l~~L~~L~Ls~----N~l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISEL-----RMPDISFLSELRVLRLSH----NRIRSLDFHVFLFNQD 101 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCC-----CGGGTTTCTTCCEEECCS----CCCCEECTTTTTTCTT
T ss_pred CcEEEcCCCCCccCCCCCC--CCcCEEECCCCCcccc-----ChhhhccCCCccEEECCC----CCCCcCCHHHhCCCCC
Confidence 4778888777777777653 7888888888876542 556788888888888888 888776 567888888
Q ss_pred CcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCccccc--cccccccccccccccccccc
Q 039475 118 LRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMA--NGFERLTSLRTLSGFTVARV 185 (286)
Q Consensus 118 Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP--~~i~~L~~L~~L~~~~~~~~ 185 (286)
|++|++++ +.++.+|.. .+++|++|++++|.+..+| ..|+++++|++|++..+...
T Consensus 102 L~~L~Ls~----------N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 102 LEYLDVSH----------NRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CCEEECTT----------SCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CCEEECCC----------CcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence 88888885 667788876 7888888888888877654 56888888888887765543
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.55 E-value=3.5e-14 Score=134.06 Aligned_cols=179 Identities=18% Similarity=0.177 Sum_probs=129.5
Q ss_pred ccCCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccC-ccc
Q 039475 35 CQEKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIP-KGL 112 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP-~~i 112 (286)
++..++++.+..+.+..+ +..+..+++|++|+++++..... .+..|.++++|++|++++ +.+..+| ..|
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~ 96 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-----EDGAYQSLSHLSTLILTG----NPIQSLALGAF 96 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEE-----CTTTTTTCTTCCEEECTT----CCCCEECTTTT
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCcc-----CcccccCchhCCEEeCcC----CcCCccCHhhh
Confidence 567899999999888655 45788999999999999975432 567899999999999999 9988776 689
Q ss_pred cCCCCCcEEecccccccCCCCCCCCCccccc-ccccccCCCEEEecCCCccc--ccccccccccccccccccccccCCcc
Q 039475 113 ENLIHLRYLKLSAVEELSETCYCPSLKRLPQ-GRGKLINLRHLIFDKDYLAY--MANGFERLTSLRTLSGFTVARVGGKY 189 (286)
Q Consensus 113 ~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~--lP~~i~~L~~L~~L~~~~~~~~~~~~ 189 (286)
+++.+|++|++++ +.+..+|. .++++++|++|++++|.+.. +|..|+++++|++|++..+...
T Consensus 97 ~~l~~L~~L~L~~----------n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~---- 162 (570)
T 2z63_A 97 SGLSSLQKLVAVE----------TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ---- 162 (570)
T ss_dssp TTCTTCCEEECTT----------SCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC----
T ss_pred cCccccccccccc----------cccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc----
Confidence 9999999999986 56777775 58888888999888888775 6778888888888888766543
Q ss_pred CCCCCCcccccCcccc----cceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 190 SSEACNLEGLRNLNHL----RQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 190 ~~~~~~~~~l~~L~~L----~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
......++.+++| . .+.+.+..- ....+..+... +|+.|+++.|...
T Consensus 163 ---~~~~~~~~~l~~L~~~~~-~L~l~~n~l---~~~~~~~~~~~-~L~~L~l~~n~~~ 213 (570)
T 2z63_A 163 ---SIYCTDLRVLHQMPLLNL-SLDLSLNPM---NFIQPGAFKEI-RLHKLTLRNNFDS 213 (570)
T ss_dssp ---EECGGGGHHHHTCTTCCC-EEECTTCCC---CEECTTTTTTC-EEEEEEEESCCSC
T ss_pred ---eecHHHccchhccchhhh-hcccCCCCc---eecCHHHhccC-cceeEeccccccc
Confidence 2223344455544 3 344443211 11122333333 6777777776443
No 53
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=3.3e-14 Score=119.94 Aligned_cols=181 Identities=14% Similarity=0.132 Sum_probs=136.3
Q ss_pred ccCCceEEEeecCCCCCCch-hhhcCCCCcEEEeccCC-CCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-c
Q 039475 35 CQEKLRHLTLMLGLPTKFPV-SIFDAKKLRSLSLFYDS-KGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-G 111 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~-~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~ 111 (286)
++..++.+.+..+.+..+++ .+..+++|++|++.++. .... .+..|.+++.|++|+++++ +.+..+|. .
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-----~~~~f~~l~~L~~L~l~~~---n~l~~i~~~~ 100 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-----ESHSFYNLSKVTHIEIRNT---RNLTYIDPDA 100 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-----CTTTEESCTTCCEEEEEEE---TTCCEECTTS
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-----CHhHcCCCcCCcEEECCCC---CCeeEcCHHH
Confidence 56689999999998876665 67889999999999986 4431 4557899999999999861 45887774 7
Q ss_pred ccCCCCCcEEecccccccCCCCCCCCCcccccccccccCCC---EEEecCC-Cccccccc-cccccccc-cccccccccc
Q 039475 112 LENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLR---HLIFDKD-YLAYMANG-FERLTSLR-TLSGFTVARV 185 (286)
Q Consensus 112 i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~---~L~l~~~-~~~~lP~~-i~~L~~L~-~L~~~~~~~~ 185 (286)
++++++|++|++++ +.++.+|. ++.+++|+ +|++++| .+..+|.+ |+.+++|+ +|++..+...
T Consensus 101 f~~l~~L~~L~l~~----------n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 101 LKELPLLKFLGIFN----------TGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp EECCTTCCEEEEEE----------ECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred hCCCCCCCEEeCCC----------CCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 89999999999986 66888887 88888888 9999999 99988876 99999999 9988766433
Q ss_pred CCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCC-CCCceEEEEeCCCCC
Q 039475 186 GGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKK-KNLVHLTLDFDKGED 245 (286)
Q Consensus 186 ~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l-~~L~~L~L~~~~~~~ 245 (286)
......+.. ++|+ .|.+.+...+.. ..+..+..+ ++|+.|+++.|..+.
T Consensus 170 -------~i~~~~~~~-~~L~-~L~L~~n~~l~~--i~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 170 -------SVQGYAFNG-TKLD-AVYLNKNKYLTV--IDKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp -------EECTTTTTT-CEEE-EEECTTCTTCCE--ECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred -------ccCHhhcCC-CCCC-EEEcCCCCCccc--CCHHHhhccccCCcEEECCCCcccc
Confidence 111112222 5566 677765432222 223457778 899999999998863
No 54
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.54 E-value=2.3e-14 Score=131.84 Aligned_cols=80 Identities=20% Similarity=0.237 Sum_probs=45.2
Q ss_pred CCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchh--hhcCCCCCcEEEeecccCCccCccc-Ccc-
Q 039475 37 EKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQG--LFDQLTCLRALKIEELWYGDQTIEI-PKG- 111 (286)
Q Consensus 37 ~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~--~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~- 111 (286)
.+.+++.+..+.+..+ |..+.++++|++|++.++..... .+. .|.+++.|++|++++ +.+..+ |..
T Consensus 79 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~ 149 (455)
T 3v47_A 79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA-----VLSGNFFKPLTSLEMLVLRD----NNIKKIQPASF 149 (455)
T ss_dssp TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTH-----HHHSSTTTTCTTCCEEECCS----SBCCSCCCCGG
T ss_pred ccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCcc-----ccCcccccCcccCCEEECCC----CccCccCcccc
Confidence 3455555555554332 44555566666666665554321 222 256666677777766 666655 444
Q ss_pred ccCCCCCcEEeccc
Q 039475 112 LENLIHLRYLKLSA 125 (286)
Q Consensus 112 i~~L~~Lr~L~L~~ 125 (286)
++++++|++|++++
T Consensus 150 ~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 150 FLNMRRFHVLDLTF 163 (455)
T ss_dssp GGGCTTCCEEECTT
T ss_pred cCCCCcccEEeCCC
Confidence 67777777777765
No 55
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.54 E-value=2.3e-13 Score=120.74 Aligned_cols=135 Identities=19% Similarity=0.236 Sum_probs=67.4
Q ss_pred CCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCC--------------
Q 039475 37 EKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYG-------------- 102 (286)
Q Consensus 37 ~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~-------------- 102 (286)
.+.+.+.+..+.+..++ .+..+++|++|++.++.... ++. +..++.|++|+++++...
T Consensus 88 ~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~------~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~ 159 (347)
T 4fmz_A 88 VKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISD------ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNY 159 (347)
T ss_dssp TTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCC------CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCE
T ss_pred CcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccC------chh-hccCCceeEEECCCCCCcccccchhhCCCCcE
Confidence 45677777776665543 46667777777777765432 222 445555555555550000
Q ss_pred -----ccCcccCccccCCCCCcEEeccc--ccccCCC-C---------CCCCCcccccccccccCCCEEEecCCCccccc
Q 039475 103 -----DQTIEIPKGLENLIHLRYLKLSA--VEELSET-C---------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMA 165 (286)
Q Consensus 103 -----~~i~~lP~~i~~L~~Lr~L~L~~--~~~LP~~-~---------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP 165 (286)
+.+..++. ++.+++|++|++++ +..+|.- . ..+.+..++. +..+++|++|++++|.+..+|
T Consensus 160 L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~ 237 (347)
T 4fmz_A 160 LTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLS 237 (347)
T ss_dssp EECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred EEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCc
Confidence 33333332 44444444444444 2222211 0 1122223332 555566666666666665555
Q ss_pred ccccccccccccccccc
Q 039475 166 NGFERLTSLRTLSGFTV 182 (286)
Q Consensus 166 ~~i~~L~~L~~L~~~~~ 182 (286)
. ++.+++|++|++..+
T Consensus 238 ~-~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 238 P-LANLSQLTWLEIGTN 253 (347)
T ss_dssp G-GTTCTTCCEEECCSS
T ss_pred c-hhcCCCCCEEECCCC
Confidence 4 556666666655544
No 56
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.54 E-value=8.5e-14 Score=131.79 Aligned_cols=107 Identities=21% Similarity=0.159 Sum_probs=85.7
Q ss_pred ccCCceEEEeecCCCCCCc-hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcccc
Q 039475 35 CQEKLRHLTLMLGLPTKFP-VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLE 113 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~ 113 (286)
.+.+++++.+..+.+..++ ..+..+++|++|++++|..... .|..|.+++.|++|+|++ |.+..+|..
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~Ls~----N~l~~lp~~-- 118 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL-----DFHVFLFNQDLEYLDVSH----NRLQNISCC-- 118 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE-----CTTTTTTCTTCCEEECTT----SCCCEECSC--
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC-----CHHHhCCCCCCCEEECCC----CcCCccCcc--
Confidence 4578999999999987665 6889999999999999986542 678899999999999999 999999987
Q ss_pred CCCCCcEEecccccccCCCCCCCCCcccc--cccccccCCCEEEecCCCcc
Q 039475 114 NLIHLRYLKLSAVEELSETCYCPSLKRLP--QGRGKLINLRHLIFDKDYLA 162 (286)
Q Consensus 114 ~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP--~~i~~L~~L~~L~l~~~~~~ 162 (286)
.+.+|++|++++ +.+..+| ..++++++|++|++++|.+.
T Consensus 119 ~l~~L~~L~Ls~----------N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 119 PMASLRHLDLSF----------NDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CCTTCSEEECCS----------SCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred ccccCCEEECCC----------CCccccCchHhhcccCcccEEecCCCccc
Confidence 899999999997 4455443 45666666666666665544
No 57
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.54 E-value=7.4e-14 Score=129.27 Aligned_cols=120 Identities=19% Similarity=0.194 Sum_probs=94.9
Q ss_pred cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475 36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL 115 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L 115 (286)
...++.+.+..+....++ .+..+++|++|+++++.... ++. +.++++|++|++++ +.+..++. ++++
T Consensus 45 l~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~------~~~-~~~l~~L~~L~l~~----n~l~~~~~-~~~l 111 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTD------ITP-LKNLTKLVDILMNN----NQIADITP-LANL 111 (466)
T ss_dssp HHTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCC------CGG-GTTCTTCCEEECCS----SCCCCCGG-GTTC
T ss_pred hccccEEecCCCCCccCc-chhhhcCCCEEECCCCccCC------chh-hhccccCCEEECCC----CccccChh-hcCC
Confidence 357899999888776665 47789999999999987654 444 78999999999999 88888886 9999
Q ss_pred CCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccc
Q 039475 116 IHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGF 180 (286)
Q Consensus 116 ~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~ 180 (286)
++|++|++++ +.+..+|. ++++++|++|++++|.+..+| .++.+++|++|.+.
T Consensus 112 ~~L~~L~L~~----------n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 112 TNLTGLTLFN----------NQITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG 164 (466)
T ss_dssp TTCCEEECCS----------SCCCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEE
T ss_pred CCCCEEECCC----------CCCCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecC
Confidence 9999999986 55777765 778888888888887777765 36777777776653
No 58
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.53 E-value=4.9e-14 Score=121.39 Aligned_cols=161 Identities=16% Similarity=0.115 Sum_probs=114.2
Q ss_pred CCceEEEeecCCCCCCch-hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cccC
Q 039475 37 EKLRHLTLMLGLPTKFPV-SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLEN 114 (286)
Q Consensus 37 ~~~r~ls~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~ 114 (286)
.+.+.+.+..+.+..++. .+..+++|++|++++|..... .+..|.+++.|++|++++ +.+..++. .+++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~l~~----n~l~~~~~~~~~~ 122 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-----ALGAFSGLSSLQKLVAVE----TNLASLENFPIGH 122 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-----CTTTTTTCTTCCEEECTT----SCCCCSTTCCCTT
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc-----ChhhhcCCccccEEECCC----CCccccCchhccc
Confidence 567888888777655443 577788888888888875432 456677788888888887 77776655 5777
Q ss_pred CCCCcEEeccc--ccc--cCCC-CCC----------CCCcccc-cccccccCCC----EEEecCCCcccccccccccccc
Q 039475 115 LIHLRYLKLSA--VEE--LSET-CYC----------PSLKRLP-QGRGKLINLR----HLIFDKDYLAYMANGFERLTSL 174 (286)
Q Consensus 115 L~~Lr~L~L~~--~~~--LP~~-~~~----------~~l~~LP-~~i~~L~~L~----~L~l~~~~~~~lP~~i~~L~~L 174 (286)
+++|++|++++ +.. +|.. ..+ +.+..+| ..+..+.+|+ .|++++|.+..+|.+.....+|
T Consensus 123 l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L 202 (276)
T 2z62_A 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202 (276)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCE
T ss_pred CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcc
Confidence 78888888877 544 4555 422 3455554 5677777777 8999999999998886667789
Q ss_pred cccccccccccCCccCCCCCCcccccCcccccceeEEccc
Q 039475 175 RTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGL 214 (286)
Q Consensus 175 ~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l 214 (286)
++|++..+... ......+..+++|+ .|.+.+.
T Consensus 203 ~~L~L~~n~l~-------~~~~~~~~~l~~L~-~L~l~~N 234 (276)
T 2z62_A 203 KELALDTNQLK-------SVPDGIFDRLTSLQ-KIWLHTN 234 (276)
T ss_dssp EEEECCSSCCS-------CCCTTTTTTCCSCC-EEECCSS
T ss_pred cEEECCCCcee-------ecCHhHhccccccc-EEEccCC
Confidence 99998877644 23333456777777 7888754
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.53 E-value=1.4e-14 Score=127.22 Aligned_cols=177 Identities=18% Similarity=0.118 Sum_probs=120.0
Q ss_pred cCCceEEEeecCCCC-CCchhh--hcCCCCcEEEeccCCCCCCCcCccchhhhcCC-----CCCcEEEeecccCCccCcc
Q 039475 36 QEKLRHLTLMLGLPT-KFPVSI--FDAKKLRSLSLFYDSKGQSAASPVLQGLFDQL-----TCLRALKIEELWYGDQTIE 107 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~-~~~~~~--~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l-----~~Lr~L~L~~~~~~~~i~~ 107 (286)
..+++++.+..+.+. .+|..+ ..+++|++|++++|.... .|..+..+ +.|++|++++ |.+..
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~l~~~~~~~L~~L~L~~----N~l~~ 163 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT------RDAWLAELQQWLKPGLKVLSIAQ----AHSLN 163 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSS------SSSHHHHHHTTCCTTCCEEEEES----CSCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcc------hhHHHHHHHHhhcCCCcEEEeeC----CCCcc
Confidence 356777777777764 456554 677888888888876543 34555555 7788888888 77776
Q ss_pred cC-ccccCCCCCcEEecccccccCCCCCCCCCcc---ccccc--ccccCCCEEEecCCCcccc---ccc-cccccccccc
Q 039475 108 IP-KGLENLIHLRYLKLSAVEELSETCYCPSLKR---LPQGR--GKLINLRHLIFDKDYLAYM---ANG-FERLTSLRTL 177 (286)
Q Consensus 108 lP-~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~---LP~~i--~~L~~L~~L~l~~~~~~~l---P~~-i~~L~~L~~L 177 (286)
+| ..++++++|++|++++ +.+.. +|..+ +++++|++|++++|.+..+ +.. +..+++|++|
T Consensus 164 ~~~~~~~~l~~L~~L~Ls~----------N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L 233 (312)
T 1wwl_A 164 FSCEQVRVFPALSTLDLSD----------NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233 (312)
T ss_dssp CCTTTCCCCSSCCEEECCS----------CTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEE
T ss_pred chHHHhccCCCCCEEECCC----------CCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEE
Confidence 66 6778888888888875 33332 45555 8899999999999988844 333 4677899999
Q ss_pred ccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475 178 SGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED 245 (286)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 245 (286)
++..+.... ......+..+++|+ .|.+.+..- ..++..+. ++|+.|+++.|+.++
T Consensus 234 ~Ls~N~l~~------~~~~~~~~~l~~L~-~L~Ls~N~l----~~ip~~~~--~~L~~L~Ls~N~l~~ 288 (312)
T 1wwl_A 234 DLSHNSLRD------AAGAPSCDWPSQLN-SLNLSFTGL----KQVPKGLP--AKLSVLDLSYNRLDR 288 (312)
T ss_dssp ECTTSCCCS------SCCCSCCCCCTTCC-EEECTTSCC----SSCCSSCC--SEEEEEECCSSCCCS
T ss_pred ECCCCcCCc------ccchhhhhhcCCCC-EEECCCCcc----Chhhhhcc--CCceEEECCCCCCCC
Confidence 888776541 12234455667777 777765321 13334444 789999999998873
No 60
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.53 E-value=1.7e-13 Score=112.34 Aligned_cols=151 Identities=14% Similarity=0.073 Sum_probs=78.5
Q ss_pred hcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCC
Q 039475 57 FDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCP 136 (286)
Q Consensus 57 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~ 136 (286)
..+++|+.|.+.++.... +| .+..+++|++|++++ +.+..++ .++.+++|++|++++ +
T Consensus 41 ~~l~~L~~L~l~~n~i~~------l~-~l~~l~~L~~L~l~~----n~~~~~~-~l~~l~~L~~L~l~~----------n 98 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD------LT-GIEYAHNIKDLTINN----IHATNYN-PISGLSNLERLRIMG----------K 98 (197)
T ss_dssp HHHHTCCEEEEESSCCSC------CT-TGGGCTTCSEEEEES----CCCSCCG-GGTTCTTCCEEEEEC----------T
T ss_pred hhcCCccEEeccCCCccC------hH-HHhcCCCCCEEEccC----CCCCcch-hhhcCCCCCEEEeEC----------C
Confidence 445556666666554431 33 345566666666666 5444433 555666666666653 3
Q ss_pred CCcc-cccccccccCCCEEEecCCCccc-cccccccccccccccccccc-ccCCccCCCCCCcccccCcccccceeEEcc
Q 039475 137 SLKR-LPQGRGKLINLRHLIFDKDYLAY-MANGFERLTSLRTLSGFTVA-RVGGKYSSEACNLEGLRNLNHLRQFLRICG 213 (286)
Q Consensus 137 ~l~~-LP~~i~~L~~L~~L~l~~~~~~~-lP~~i~~L~~L~~L~~~~~~-~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~ 213 (286)
.+.. .|..++++++|++|++++|.+.. .|..++++++|++|++..+. .. .+..+..+++|+ .|.+.+
T Consensus 99 ~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~---------~~~~l~~l~~L~-~L~l~~ 168 (197)
T 4ezg_A 99 DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT---------DIMPLKTLPELK-SLNIQF 168 (197)
T ss_dssp TCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC---------CCGGGGGCSSCC-EEECTT
T ss_pred ccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc---------ccHhhcCCCCCC-EEECCC
Confidence 3432 45555566666666666665553 34456666666666555543 11 122344444454 455543
Q ss_pred cCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 214 LGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 214 l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
..- .. + ..+..+++|+.|+++.|..+
T Consensus 169 n~i-~~---~-~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 169 DGV-HD---Y-RGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp BCC-CC---C-TTGGGCSSCCEEEECBC---
T ss_pred CCC-cC---h-HHhccCCCCCEEEeeCcccC
Confidence 211 11 1 14566777888888887765
No 61
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.53 E-value=9.7e-14 Score=116.62 Aligned_cols=121 Identities=26% Similarity=0.352 Sum_probs=70.3
Q ss_pred EEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-ccCCCCCcE
Q 039475 42 LTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-LENLIHLRY 120 (286)
Q Consensus 42 ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i~~L~~Lr~ 120 (286)
+....+....+|..+ .++|+.|++++|..... .+..|.+++.|++|+|++ +.+..+|.. ++.+.+|++
T Consensus 24 v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~L~~----N~l~~i~~~~~~~l~~L~~ 92 (229)
T 3e6j_A 24 VDCRSKRHASVPAGI--PTNAQILYLHDNQITKL-----EPGVFDSLINLKELYLGS----NQLGALPVGVFDSLTQLTV 92 (229)
T ss_dssp EECTTSCCSSCCSCC--CTTCSEEECCSSCCCCC-----CTTTTTTCTTCCEEECCS----SCCCCCCTTTTTTCTTCCE
T ss_pred eEccCCCcCccCCCC--CCCCCEEEcCCCccCcc-----CHHHhhCccCCcEEECCC----CCCCCcChhhcccCCCcCE
Confidence 444444444455443 25666666666654432 455566666666666666 666666543 466666666
Q ss_pred EecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCccccccccccccccccccccccc
Q 039475 121 LKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVA 183 (286)
Q Consensus 121 L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~ 183 (286)
|+|++ +.++.+|.. +..+++|++|++++|.+..+|.+++.+++|++|++..+.
T Consensus 93 L~Ls~----------N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 93 LDLGT----------NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp EECCS----------SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC
T ss_pred EECCC----------CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc
Confidence 66664 455555543 356666666666666666666666666666666655543
No 62
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=9e-14 Score=116.83 Aligned_cols=132 Identities=30% Similarity=0.402 Sum_probs=115.2
Q ss_pred ccCCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-c
Q 039475 35 CQEKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-L 112 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i 112 (286)
++.+++.|.+..+.+..+ +..+..+++|+.|++.+|..... .+..|..++.|++|+|++ |.+..+|.. +
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-----~~~~~~~l~~L~~L~Ls~----N~l~~l~~~~~ 108 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-----PVGVFDSLTQLTVLDLGT----NQLTVLPSAVF 108 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCS----SCCCCCCTTTT
T ss_pred CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-----ChhhcccCCCcCEEECCC----CcCCccChhHh
Confidence 567899999999988665 66788999999999999987432 556789999999999999 999988875 6
Q ss_pred cCCCCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCccccccc-cccccccccccccccccc
Q 039475 113 ENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARV 185 (286)
Q Consensus 113 ~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~ 185 (286)
+.+.+|++|++++ +.++.+|..++++++|++|++++|.+..+|.+ +..+++|++|++..+...
T Consensus 109 ~~l~~L~~L~Ls~----------N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 109 DRLVHLKELFMCC----------NKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTCTTCCEEECCS----------SCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcchhhCeEeccC----------CcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 8999999999996 78999999999999999999999999999865 899999999988776543
No 63
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.52 E-value=1.7e-13 Score=117.97 Aligned_cols=151 Identities=26% Similarity=0.383 Sum_probs=124.2
Q ss_pred cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-ccC
Q 039475 36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-LEN 114 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i~~ 114 (286)
..+++++.+..+.+..+ +.+..+++|++|++.++..... .+..|.+++.|++|++++ |.+..+|.. +++
T Consensus 62 l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~ 131 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSL-----PNGVFDKLTNLKELVLVE----NQLQSLPDGVFDK 131 (272)
T ss_dssp CTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCC-----CTTTTTTCTTCCEEECTT----SCCCCCCTTTTTT
T ss_pred CCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCcc-----ChhHhcCCcCCCEEECCC----CcCCccCHHHhcc
Confidence 57799999999888665 4788999999999999986542 566789999999999999 999888765 799
Q ss_pred CCCCcEEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCccccccc-ccccccccccccccccccCCccCCC
Q 039475 115 LIHLRYLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARVGGKYSSE 192 (286)
Q Consensus 115 L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~ 192 (286)
+.+|++|++++ +.+..+|.. ++++++|++|++++|.+..+|.. ++.+++|++|++..+...
T Consensus 132 l~~L~~L~L~~----------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~------- 194 (272)
T 3rfs_A 132 LTNLTYLNLAH----------NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK------- 194 (272)
T ss_dssp CTTCCEEECCS----------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-------
T ss_pred CCCCCEEECCC----------CccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC-------
Confidence 99999999996 568888765 58999999999999999988776 789999999998877654
Q ss_pred CCCcccccCcccccceeEEccc
Q 039475 193 ACNLEGLRNLNHLRQFLRICGL 214 (286)
Q Consensus 193 ~~~~~~l~~L~~L~~~L~i~~l 214 (286)
+.....++.+++|+ .|.+.+.
T Consensus 195 ~~~~~~~~~l~~L~-~L~l~~N 215 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQ-YIWLHDN 215 (272)
T ss_dssp CCCTTTTTTCTTCC-EEECCSS
T ss_pred ccCHHHHhCCcCCC-EEEccCC
Confidence 33334467777777 7887754
No 64
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.52 E-value=3e-14 Score=135.70 Aligned_cols=132 Identities=19% Similarity=0.208 Sum_probs=105.1
Q ss_pred cccCCceEEEeecCCCCCCc-hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-c
Q 039475 34 SCQEKLRHLTLMLGLPTKFP-VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-G 111 (286)
Q Consensus 34 ~~~~~~r~ls~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~ 111 (286)
.+|..+++|.+..+.+..++ ..|.++++|++|++++|..... .+.+|.++++|++|+|++ |.+..+|. .
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-----~~~~f~~L~~L~~L~Ls~----N~l~~l~~~~ 119 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-----EDGAYQSLSHLSTLILTG----NPIQSLALGA 119 (635)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-----CTTTTTTCTTCCEEECTT----CCCCEECGGG
T ss_pred CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc-----ChhHhcCCCCCCEEEccC----CcCCCCCHHH
Confidence 35677899999988887665 4688899999999999876432 566789999999999999 99988886 5
Q ss_pred ccCCCCCcEEecccccccCCCCCCCCCccccc-ccccccCCCEEEecCCCccc--ccccccccccccccccccccc
Q 039475 112 LENLIHLRYLKLSAVEELSETCYCPSLKRLPQ-GRGKLINLRHLIFDKDYLAY--MANGFERLTSLRTLSGFTVAR 184 (286)
Q Consensus 112 i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~--lP~~i~~L~~L~~L~~~~~~~ 184 (286)
|++|.+|++|++++ +.++.+|. .|+++++|++|++++|.+.. +|..++.+++|++|++..+..
T Consensus 120 f~~L~~L~~L~Ls~----------N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 120 FSGLSSLQKLVAVE----------TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp GTTCTTCCEEECTT----------SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred hcCCCCCCEEECCC----------CcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 79999999999986 56777775 47888888888888887764 456688888888887766543
No 65
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.51 E-value=2e-13 Score=126.26 Aligned_cols=118 Identities=19% Similarity=0.151 Sum_probs=90.9
Q ss_pred cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475 36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL 115 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L 115 (286)
..+++++.+..+.+..+| .+..+++|++|+++++.... ++ +..+++|++|++++ +.+..+| ++++
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~------~~--~~~l~~L~~L~Ls~----N~l~~~~--~~~l 105 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT------LD--LSQNTNLTYLACDS----NKLTNLD--VTPL 105 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC------CC--CTTCTTCSEEECCS----SCCSCCC--CTTC
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe------Ec--cccCCCCCEEECcC----CCCceee--cCCC
Confidence 467899999988887665 68889999999999987654 43 68899999999999 8888876 8999
Q ss_pred CCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccc
Q 039475 116 IHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTV 182 (286)
Q Consensus 116 ~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~ 182 (286)
++|++|++++ +.+..+| ++++++|++|++++|.+..+| ++++++|++|++..+
T Consensus 106 ~~L~~L~L~~----------N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 106 TKLTYLNCDT----------NKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLN 158 (457)
T ss_dssp TTCCEEECCS----------SCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTC
T ss_pred CcCCEEECCC----------CcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCC
Confidence 9999999986 4566665 667777777777777666653 666666666665554
No 66
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.51 E-value=3.4e-13 Score=124.78 Aligned_cols=131 Identities=21% Similarity=0.279 Sum_probs=86.7
Q ss_pred cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475 36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL 115 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L 115 (286)
..+++++.+..+....+++ +..+++|++|.+.++.... ++. +.++++|++|++++ +.+..+|. ++++
T Consensus 67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~------~~~-~~~l~~L~~L~L~~----n~l~~~~~-~~~l 133 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD------ITP-LANLTNLTGLTLFN----NQITDIDP-LKNL 133 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC------CGG-GTTCTTCCEEECCS----SCCCCCGG-GTTC
T ss_pred hcCCCEEECCCCccCCchh-hhccccCCEEECCCCcccc------Chh-hcCCCCCCEEECCC----CCCCCChH-HcCC
Confidence 5678999999988877776 8889999999999887654 344 78899999999999 88888775 8888
Q ss_pred CCCcEEeccc--ccccCCCCCCCCCc---------ccccccccccCCCEEEecCCCccccccccccccccccccccc
Q 039475 116 IHLRYLKLSA--VEELSETCYCPSLK---------RLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFT 181 (286)
Q Consensus 116 ~~Lr~L~L~~--~~~LP~~~~~~~l~---------~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~ 181 (286)
++|++|++++ +..+|.-..+..++ .++ .++++++|++|++++|.+..++ .++++++|++|++..
T Consensus 134 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~ 208 (466)
T 1o6v_A 134 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK-PLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATN 208 (466)
T ss_dssp TTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCS
T ss_pred CCCCEEECCCCccCCChhhccCCcccEeecCCcccCch-hhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecC
Confidence 8899998887 55554322222221 112 2445555555555555444442 244444454444443
No 67
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=1e-13 Score=115.75 Aligned_cols=104 Identities=21% Similarity=0.353 Sum_probs=47.5
Q ss_pred CCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-CccccCCCCCcEEecccccccCCCCCCCCC
Q 039475 60 KKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKGLENLIHLRYLKLSAVEELSETCYCPSL 138 (286)
Q Consensus 60 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l 138 (286)
++|+.|++.++..... .+..|..++.|++|+|++ +.+..+ |..++++.+|++|+|++ +.+
T Consensus 32 ~~l~~L~l~~n~i~~i-----~~~~~~~l~~L~~L~Ls~----N~i~~~~~~~~~~l~~L~~L~Ls~----------N~l 92 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVI-----PPGAFSPYKKLRRIDLSN----NQISELAPDAFQGLRSLNSLVLYG----------NKI 92 (220)
T ss_dssp TTCCEEECCSSCCCEE-----CTTSSTTCTTCCEEECCS----SCCCEECTTTTTTCSSCCEEECCS----------SCC
T ss_pred cCCCEEECCCCcCCCc-----CHhHhhCCCCCCEEECCC----CcCCCcCHHHhhCCcCCCEEECCC----------CcC
Confidence 3455555555443221 223444455555555555 444433 34445555555555543 344
Q ss_pred cccccc-cccccCCCEEEecCCCcccccc-cccccccccccccccc
Q 039475 139 KRLPQG-RGKLINLRHLIFDKDYLAYMAN-GFERLTSLRTLSGFTV 182 (286)
Q Consensus 139 ~~LP~~-i~~L~~L~~L~l~~~~~~~lP~-~i~~L~~L~~L~~~~~ 182 (286)
+.+|.. +..+++|++|++++|.+..+++ .|+.+++|++|++..+
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC
Confidence 444433 2444455555555544444422 2444444544444443
No 68
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.51 E-value=7e-14 Score=123.69 Aligned_cols=134 Identities=19% Similarity=0.174 Sum_probs=101.3
Q ss_pred CceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-CccccCCC
Q 039475 38 KLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKGLENLI 116 (286)
Q Consensus 38 ~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i~~L~ 116 (286)
..+.+.+..+....+|..+ .++|++|++.++..... .+..|.++++|++|++++ +.+..+ |..+++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~l~ 102 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISEL-----RKDDFKGLQHLYALVLVN----NKISKIHEKAFSPLR 102 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEE-----CTTTTTTCTTCCEEECCS----SCCCEECGGGSTTCT
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCcc-----CHhHhhCCCCCcEEECCC----CccCccCHhHhhCcC
Confidence 5788888888777788766 47999999999986532 566889999999999999 998877 77899999
Q ss_pred CCcEEeccc--ccccCCC-C--------CCCCCccccc-ccccccCCCEEEecCCCccc---cccccccccccccccccc
Q 039475 117 HLRYLKLSA--VEELSET-C--------YCPSLKRLPQ-GRGKLINLRHLIFDKDYLAY---MANGFERLTSLRTLSGFT 181 (286)
Q Consensus 117 ~Lr~L~L~~--~~~LP~~-~--------~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~---lP~~i~~L~~L~~L~~~~ 181 (286)
+|++|++++ +..+|.. + ..+.+..+|. .++++++|++|++++|.+.. .|..++.+ +|++|++..
T Consensus 103 ~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 103 KLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp TCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred CCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence 999999998 6677765 4 3334556664 36778888888887777652 34446666 777776655
Q ss_pred cc
Q 039475 182 VA 183 (286)
Q Consensus 182 ~~ 183 (286)
+.
T Consensus 182 n~ 183 (332)
T 2ft3_A 182 AK 183 (332)
T ss_dssp SB
T ss_pred CC
Confidence 43
No 69
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.51 E-value=1.1e-13 Score=120.45 Aligned_cols=150 Identities=20% Similarity=0.205 Sum_probs=122.9
Q ss_pred hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCC
Q 039475 56 IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYC 135 (286)
Q Consensus 56 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~ 135 (286)
...+++|+.|.+.++.... ++. +..+++|++|++++ +.+..++. ++++++|++|++++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~------~~~-~~~l~~L~~L~L~~----n~l~~~~~-l~~l~~L~~L~l~~---------- 99 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS------VQG-IQYLPNVTKLFLNG----NKLTDIKP-LANLKNLGWLFLDE---------- 99 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC------CTT-GGGCTTCCEEECCS----SCCCCCGG-GTTCTTCCEEECCS----------
T ss_pred hhhcCcccEEEccCCCccc------Chh-HhcCCCCCEEEccC----CccCCCcc-cccCCCCCEEECCC----------
Confidence 4578999999999987643 443 78899999999999 99998887 99999999999996
Q ss_pred CCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccC
Q 039475 136 PSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLG 215 (286)
Q Consensus 136 ~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~ 215 (286)
+.+..+|. ++++++|++|++++|.+..+ ..++.+++|++|++..+... .+..+..+++|+ .|.+.+..
T Consensus 100 n~l~~~~~-l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~---------~~~~l~~l~~L~-~L~L~~N~ 167 (291)
T 1h6t_A 100 NKVKDLSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKIT---------DITVLSRLTKLD-TLSLEDNQ 167 (291)
T ss_dssp SCCCCGGG-GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCC---------CCGGGGGCTTCS-EEECCSSC
T ss_pred CcCCCChh-hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCC---------cchhhccCCCCC-EEEccCCc
Confidence 66888775 99999999999999999987 47999999999999877644 235677777777 78887542
Q ss_pred CcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 216 NLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 216 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
- .. .+. +..+++|+.|+++.|..+
T Consensus 168 l-~~---~~~-l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 168 I-SD---IVP-LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp C-CC---CGG-GTTCTTCCEEECCSSCCC
T ss_pred c-cc---chh-hcCCCccCEEECCCCcCC
Confidence 1 11 122 889999999999999887
No 70
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.50 E-value=5.8e-14 Score=139.19 Aligned_cols=181 Identities=18% Similarity=0.166 Sum_probs=132.9
Q ss_pred ccCCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-Cccc
Q 039475 35 CQEKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKGL 112 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i 112 (286)
.+.++++|.+..+.+..+ +..+..+++|++|+++++..... +.|..|.++++|++|+|++ |.+..+ |..|
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~----i~~~~f~~L~~L~~L~Ls~----N~l~~~~p~~~ 93 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT----IDKEAFRNLPNLRILDLGS----SKIYFLHPDAF 93 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCE----ECTTTTSSCTTCCEEECTT----CCCCEECTTSS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccc----cCHHHhcCCCCCCEEECCC----CcCcccCHhHc
Confidence 678899999999888544 67889999999999999864332 1478899999999999999 998866 8899
Q ss_pred cCCCCCcEEecccccccCCCCCCCCCcc-cccc--cccccCCCEEEecCCCccccc--ccccccccccccccccccccCC
Q 039475 113 ENLIHLRYLKLSAVEELSETCYCPSLKR-LPQG--RGKLINLRHLIFDKDYLAYMA--NGFERLTSLRTLSGFTVARVGG 187 (286)
Q Consensus 113 ~~L~~Lr~L~L~~~~~LP~~~~~~~l~~-LP~~--i~~L~~L~~L~l~~~~~~~lP--~~i~~L~~L~~L~~~~~~~~~~ 187 (286)
+++.+|++|+|++ +.+.. +|.. ++++++|++|++++|.+..++ ..|+++++|++|++..+...
T Consensus 94 ~~l~~L~~L~Ls~----------n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~-- 161 (844)
T 3j0a_A 94 QGLFHLFELRLYF----------CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-- 161 (844)
T ss_dssp CSCSSCCCEECTT----------CCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC--
T ss_pred cCCcccCEeeCcC----------CCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC--
Confidence 9999999999996 44554 5654 889999999999999888653 46999999999988776543
Q ss_pred ccCCCCCCcccccCc--ccccceeEEcccCCcccchhhhhhcCCCC------CCceEEEEeCCCC
Q 039475 188 KYSSEACNLEGLRNL--NHLRQFLRICGLGNLQMRLKINAHLEKKK------NLVHLTLDFDKGE 244 (286)
Q Consensus 188 ~~~~~~~~~~~l~~L--~~L~~~L~i~~l~~~~~~~~~~~~l~~l~------~L~~L~L~~~~~~ 244 (286)
......+..+ ++|+ .|.+....- ....+..+..+. .|+.|+++.|...
T Consensus 162 -----~~~~~~l~~l~~~~L~-~L~L~~n~l---~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 217 (844)
T 3j0a_A 162 -----LVCEHELEPLQGKTLS-FFSLAANSL---YSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217 (844)
T ss_dssp -----CCCSGGGHHHHHCSSC-CCEECCSBS---CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred -----eeCHHHcccccCCccc-eEECCCCcc---ccccccchhhcCCccccCceeEEecCCCcCc
Confidence 2333444444 4555 566654321 111122222222 4888888888654
No 71
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.50 E-value=1.6e-14 Score=137.64 Aligned_cols=190 Identities=18% Similarity=0.127 Sum_probs=123.0
Q ss_pred cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475 36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL 115 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L 115 (286)
....+.+.+..+.... +..+..+++|++|+++++....... .+..+..++.|++|++++ +.+..+|..++.+
T Consensus 327 l~~L~~L~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~---~~~~~~~~~~L~~L~L~~----n~l~~~~~~~~~l 398 (606)
T 3vq2_A 327 LPFLKSLTLTMNKGSI-SFKKVALPSLSYLDLSRNALSFSGC---CSYSDLGTNSLRHLDLSF----NGAIIMSANFMGL 398 (606)
T ss_dssp CSSCCEEEEESCSSCE-ECCCCCCTTCCEEECCSSCEEEEEE---CCHHHHCCSCCCEEECCS----CSEEEECCCCTTC
T ss_pred CCccceeeccCCcCcc-chhhccCCCCCEEECcCCccCCCcc---hhhhhccCCcccEeECCC----CccccchhhccCC
Confidence 3567788887774321 2245678888888888876543211 366677888888888888 7777788788888
Q ss_pred CCCcEEeccc--ccccCC--C-CCCCCC----------c-ccccccccccCCCEEEecCCCccc--cccccccccccccc
Q 039475 116 IHLRYLKLSA--VEELSE--T-CYCPSL----------K-RLPQGRGKLINLRHLIFDKDYLAY--MANGFERLTSLRTL 177 (286)
Q Consensus 116 ~~Lr~L~L~~--~~~LP~--~-~~~~~l----------~-~LP~~i~~L~~L~~L~l~~~~~~~--lP~~i~~L~~L~~L 177 (286)
.+|++|++++ +..++. . ..+..+ . ..|..++++++|++|++++|.+.. +|..++.+++|++|
T Consensus 399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 478 (606)
T 3vq2_A 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478 (606)
T ss_dssp TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence 8888888877 444433 2 222222 2 246667777788888887777764 56667777888887
Q ss_pred ccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 178 SGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
++..+... +.....++.+++|+ .|.+.+..- ....+..+..+++|+.|+|++|+.+
T Consensus 479 ~Ls~n~l~-------~~~~~~~~~l~~L~-~L~Ls~N~l---~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 479 DLSKCQLE-------QISWGVFDTLHRLQ-LLNMSHNNL---LFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp ECTTSCCC-------EECTTTTTTCTTCC-EEECCSSCC---SCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred ECCCCcCC-------ccChhhhcccccCC-EEECCCCcC---CCcCHHHccCCCcCCEEECCCCcCc
Confidence 77766543 23334456666666 666664311 2334556777777777777777765
No 72
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.50 E-value=3.3e-15 Score=132.10 Aligned_cols=187 Identities=16% Similarity=0.121 Sum_probs=85.9
Q ss_pred CceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCc-ccCccccCCC
Q 039475 38 KLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTI-EIPKGLENLI 116 (286)
Q Consensus 38 ~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~-~lP~~i~~L~ 116 (286)
.++.+.+..+.....+..+..+++|++|+++++...... ++..+..+++|++|++++ +.+. ..|..+++++
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~----~~~~~~~~~~L~~L~L~~----~~l~~~~~~~l~~~~ 142 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST----LHGILSQCSKLQNLSLEG----LRLSDPIVNTLAKNS 142 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHH----HHHHHTTBCCCSEEECTT----CBCCHHHHHHHTTCT
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHH----HHHHHhhCCCCCEEeCcC----cccCHHHHHHHhcCC
Confidence 344444444443333333344555555555554322110 334445555555555555 4443 3444455555
Q ss_pred CCcEEeccc---cc--ccCCC-C-----------CCCCCcc--ccccccccc-CCCEEEecCCC--c--ccccccccccc
Q 039475 117 HLRYLKLSA---VE--ELSET-C-----------YCPSLKR--LPQGRGKLI-NLRHLIFDKDY--L--AYMANGFERLT 172 (286)
Q Consensus 117 ~Lr~L~L~~---~~--~LP~~-~-----------~~~~l~~--LP~~i~~L~-~L~~L~l~~~~--~--~~lP~~i~~L~ 172 (286)
+|++|++++ ++ .+|.. . +|..+.. +|..+.+++ +|++|++++|. + ..+|..+++++
T Consensus 143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~ 222 (336)
T 2ast_B 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 222 (336)
T ss_dssp TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT
T ss_pred CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC
Confidence 555555543 00 00000 0 1323432 455555666 66666666653 2 23444555666
Q ss_pred cccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeC
Q 039475 173 SLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFD 241 (286)
Q Consensus 173 ~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~ 241 (286)
+|++|++..+... ....+..+.++++|+ .|.+.++... .+.....+.++++|+.|+++.+
T Consensus 223 ~L~~L~l~~~~~l------~~~~~~~l~~l~~L~-~L~l~~~~~~--~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 223 NLVHLDLSDSVML------KNDCFQEFFQLNYLQ-HLSLSRCYDI--IPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCSEEECTTCTTC------CGGGGGGGGGCTTCC-EEECTTCTTC--CGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCEEeCCCCCcC------CHHHHHHHhCCCCCC-EeeCCCCCCC--CHHHHHHHhcCCCCCEEeccCc
Confidence 6666665555421 123344455555555 5666544321 1111234555666666666655
No 73
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.50 E-value=7.6e-14 Score=115.22 Aligned_cols=127 Identities=28% Similarity=0.392 Sum_probs=65.0
Q ss_pred CCceEEEeecCCCCCCchh-hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-ccC
Q 039475 37 EKLRHLTLMLGLPTKFPVS-IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-LEN 114 (286)
Q Consensus 37 ~~~r~ls~~~~~~~~~~~~-~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i~~ 114 (286)
.+++++.+..+.+..++.. +..+++|++|++.++..... .+..|..++.|++|++++ +.+..+|.. +++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~~~~ 98 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-----PNGVFNKLTSLTYLNLST----NQLQSLPNGVFDK 98 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-----CTTTTTTCTTCCEEECCS----SCCCCCCTTTTTT
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-----ChhhcCCCCCcCEEECCC----CcCCccCHhHhcC
Confidence 3455555555554433332 34555555555555543321 333445555555555555 555555443 355
Q ss_pred CCCCcEEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCccccccc-ccccccccccccccc
Q 039475 115 LIHLRYLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTV 182 (286)
Q Consensus 115 L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~ 182 (286)
+.+|++|++++ +.+..+|.. +.++++|++|++++|.+..+|.. ++++++|++|++..+
T Consensus 99 l~~L~~L~L~~----------N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 99 LTQLKELALNT----------NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CTTCCEEECCS----------SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred ccCCCEEEcCC----------CcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 55555555553 445555443 35555555555555555555444 455555555555443
No 74
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=8.3e-14 Score=111.07 Aligned_cols=129 Identities=22% Similarity=0.204 Sum_probs=101.0
Q ss_pred ccCCceEEEeecCCCC--CCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcc-cCcc
Q 039475 35 CQEKLRHLTLMLGLPT--KFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIE-IPKG 111 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~--~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~-lP~~ 111 (286)
.+.+++++.+..+.+. .+|..+..+++|++|++.+|.... + ..|..++.|++|++++ |.+.. +|..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~------~-~~~~~l~~L~~L~Ls~----N~l~~~~~~~ 90 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS------V-SNLPKLPKLKKLELSE----NRIFGGLDML 90 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC------C-SSCCCCSSCCEEEEES----CCCCSCCCHH
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC------h-hhhccCCCCCEEECcC----CcCchHHHHH
Confidence 3567888888888775 677777888888888888887543 3 4567888888888888 88776 7777
Q ss_pred ccCCCCCcEEecccccccCCCCCCCCCcccc--cccccccCCCEEEecCCCcccccc----cccccccccccccccccc
Q 039475 112 LENLIHLRYLKLSAVEELSETCYCPSLKRLP--QGRGKLINLRHLIFDKDYLAYMAN----GFERLTSLRTLSGFTVAR 184 (286)
Q Consensus 112 i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP--~~i~~L~~L~~L~l~~~~~~~lP~----~i~~L~~L~~L~~~~~~~ 184 (286)
++++++|++|++++ +.++.+| ..++++++|++|++++|.+..+|. .++.+++|++|++..+..
T Consensus 91 ~~~l~~L~~L~Ls~----------N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 91 AEKLPNLTHLNLSG----------NKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp HHHCTTCCEEECBS----------SSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred HhhCCCCCEEeccC----------CccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 77788888888885 5677776 678888888888888888888776 588888888888776643
No 75
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=1.3e-13 Score=112.95 Aligned_cols=145 Identities=16% Similarity=0.135 Sum_probs=120.2
Q ss_pred cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcc-cCccccC
Q 039475 36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIE-IPKGLEN 114 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~-lP~~i~~ 114 (286)
..+++++.+..+.+..++ .+..+++|++|++.++... .+..+..++.|++|++++ +.+.. .|..++.
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~-------~~~~l~~l~~L~~L~l~~----n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHAT-------NYNPISGLSNLERLRIMG----KDVTSDKIPNLSG 110 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCS-------CCGGGTTCTTCCEEEEEC----TTCBGGGSCCCTT
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCC-------cchhhhcCCCCCEEEeEC----CccCcccChhhcC
Confidence 467899999999888777 6889999999999999543 234678999999999999 99875 7889999
Q ss_pred CCCCcEEecccccccCCCCCCCCCcc-cccccccccCCCEEEecCCC-cccccccccccccccccccccccccCCccCCC
Q 039475 115 LIHLRYLKLSAVEELSETCYCPSLKR-LPQGRGKLINLRHLIFDKDY-LAYMANGFERLTSLRTLSGFTVARVGGKYSSE 192 (286)
Q Consensus 115 L~~Lr~L~L~~~~~LP~~~~~~~l~~-LP~~i~~L~~L~~L~l~~~~-~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~ 192 (286)
+++|++|++++ +.+.. .|..++++++|++|++++|. +..+| .++.+++|++|++..+...
T Consensus 111 l~~L~~L~Ls~----------n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~------- 172 (197)
T 4ezg_A 111 LTSLTLLDISH----------SAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH------- 172 (197)
T ss_dssp CTTCCEEECCS----------SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-------
T ss_pred CCCCCEEEecC----------CccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-------
Confidence 99999999995 55664 78889999999999999997 88887 7999999999999877644
Q ss_pred CCCcccccCcccccceeEEcc
Q 039475 193 ACNLEGLRNLNHLRQFLRICG 213 (286)
Q Consensus 193 ~~~~~~l~~L~~L~~~L~i~~ 213 (286)
.+..+..+++|+ .|.+.+
T Consensus 173 --~~~~l~~l~~L~-~L~l~~ 190 (197)
T 4ezg_A 173 --DYRGIEDFPKLN-QLYAFS 190 (197)
T ss_dssp --CCTTGGGCSSCC-EEEECB
T ss_pred --ChHHhccCCCCC-EEEeeC
Confidence 233566677777 787764
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.48 E-value=4.7e-14 Score=131.55 Aligned_cols=179 Identities=14% Similarity=0.132 Sum_probs=111.3
Q ss_pred CCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475 37 EKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL 115 (286)
Q Consensus 37 ~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L 115 (286)
.+++.|.+..+.+..+ |..+..+++|++|++++|..... .| |..++.|++|+|++ |.+..+|..
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~--l~~l~~L~~L~Ls~----N~l~~l~~~---- 98 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-----LD--LESLSTLRTLDLNN----NYVQELLVG---- 98 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEE-----EE--CTTCTTCCEEECCS----SEEEEEEEC----
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCC-----cc--cccCCCCCEEEecC----CcCCCCCCC----
Confidence 4688888888887555 45788889999999988876432 33 77888888888888 777766532
Q ss_pred CCCcEEeccc--ccccCCC-C--------CCCCCccc-ccccccccCCCEEEecCCCcccc-ccccc-cccccccccccc
Q 039475 116 IHLRYLKLSA--VEELSET-C--------YCPSLKRL-PQGRGKLINLRHLIFDKDYLAYM-ANGFE-RLTSLRTLSGFT 181 (286)
Q Consensus 116 ~~Lr~L~L~~--~~~LP~~-~--------~~~~l~~L-P~~i~~L~~L~~L~l~~~~~~~l-P~~i~-~L~~L~~L~~~~ 181 (286)
++|++|++++ +..+|.. . ..+.+..+ |..++++++|++|++++|.+..+ |..+. .+++|++|++..
T Consensus 99 ~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp TTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 5666666665 4443333 2 22334444 45677777788888877777753 44454 677777777766
Q ss_pred ccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 182 VARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 182 ~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
+... .+.....+++|+ .|.+.+..- ..++..+..+++|+.|+|+.|..+
T Consensus 179 N~l~---------~~~~~~~l~~L~-~L~Ls~N~l----~~~~~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 179 NFIY---------DVKGQVVFAKLK-TLDLSSNKL----AFMGPEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp SCCC---------EEECCCCCTTCC-EEECCSSCC----CEECGGGGGGTTCSEEECTTSCCC
T ss_pred Cccc---------cccccccCCCCC-EEECCCCCC----CCCCHhHcCCCCccEEEecCCcCc
Confidence 6533 112233455555 555553211 112233555666666666666654
No 77
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=1.6e-13 Score=114.60 Aligned_cols=132 Identities=24% Similarity=0.309 Sum_probs=114.2
Q ss_pred ccCCceEEEeecCCCCCCch-hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-c
Q 039475 35 CQEKLRHLTLMLGLPTKFPV-SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-L 112 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i 112 (286)
++..++.|.+..+.+..++. .+..+++|+.|++++|..... .|..|.++++|++|+|++ |.+..+|.. +
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-----~~~~~~~l~~L~~L~Ls~----N~l~~l~~~~f 100 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-----APDAFQGLRSLNSLVLYG----NKITELPKSLF 100 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-----CTTTTTTCSSCCEEECCS----SCCCCCCTTTT
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-----CHHHhhCCcCCCEEECCC----CcCCccCHhHc
Confidence 45679999999998876654 688899999999999986542 678899999999999999 999999986 5
Q ss_pred cCCCCCcEEecccccccCCCCCCCCCccc-ccccccccCCCEEEecCCCccccccc-cccccccccccccccccc
Q 039475 113 ENLIHLRYLKLSAVEELSETCYCPSLKRL-PQGRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARV 185 (286)
Q Consensus 113 ~~L~~Lr~L~L~~~~~LP~~~~~~~l~~L-P~~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~ 185 (286)
+.+.+|++|+|++ +.+..+ |..+..+++|++|++++|.+..+|.+ ++.+++|++|++..+...
T Consensus 101 ~~l~~L~~L~L~~----------N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 101 EGLFSLQLLLLNA----------NKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTCTTCCEEECCS----------SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCCCCCEEECCC----------CCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 8999999999996 678877 46789999999999999999988876 999999999998776543
No 78
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=3.1e-13 Score=115.97 Aligned_cols=160 Identities=20% Similarity=0.149 Sum_probs=91.7
Q ss_pred eecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEec
Q 039475 44 LMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKL 123 (286)
Q Consensus 44 ~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L 123 (286)
+..+....++ .+..+++|++|++.++.... ++ .+..+++|++|++++ |.+..+|. ++++++|++|++
T Consensus 26 l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~------l~-~l~~l~~L~~L~L~~----N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 26 LGKQSVTDLV-SQKELSGVQNFNGDNSNIQS------LA-GMQFFTNLKELHLSH----NQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HTCSCTTSEE-CHHHHTTCSEEECTTSCCCC------CT-TGGGCTTCCEEECCS----SCCCCCGG-GTTCSSCCEEEC
T ss_pred hcCCCccccc-chhhcCcCcEEECcCCCccc------ch-HHhhCCCCCEEECCC----CccCCChh-hccCCCCCEEEC
Confidence 3333433333 45566677777776665432 33 356667777777777 66666665 667777777777
Q ss_pred ccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCCcccccCcc
Q 039475 124 SAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLN 203 (286)
Q Consensus 124 ~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~ 203 (286)
++ +.++.+|.... .+|++|++++|.+..+| .++.+++|++|++..+... .+..+..++
T Consensus 93 ~~----------N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~---------~~~~l~~l~ 150 (263)
T 1xeu_A 93 NR----------NRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLK---------SIVMLGFLS 150 (263)
T ss_dssp CS----------SCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCC---------BCGGGGGCT
T ss_pred CC----------CccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCC---------CChHHccCC
Confidence 64 45555554323 66666666666666654 4666666666666555433 122445555
Q ss_pred cccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 204 HLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 204 ~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
+|+ .|.+.+..- .+. ..+..+++|+.|+++.|...
T Consensus 151 ~L~-~L~L~~N~i---~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 151 KLE-VLDLHGNEI---TNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TCC-EEECTTSCC---CBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred CCC-EEECCCCcC---cch--HHhccCCCCCEEeCCCCccc
Confidence 555 555543211 111 44666667777777766554
No 79
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.48 E-value=7.9e-14 Score=108.96 Aligned_cols=124 Identities=21% Similarity=0.220 Sum_probs=94.2
Q ss_pred cCCceEEEeecCCCC--CCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcc-cCccc
Q 039475 36 QEKLRHLTLMLGLPT--KFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIE-IPKGL 112 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~--~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~-lP~~i 112 (286)
+.+++++.+..+... .+|..+..+++|+.|++.+|.... + ..+..++.|++|++++ |.+.. +|..+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------~-~~~~~l~~L~~L~Ls~----n~i~~~~~~~~ 84 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS------I-ANLPKLNKLKKLELSD----NRVSGGLEVLA 84 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC------C-TTCCCCTTCCEEECCS----SCCCSCTHHHH
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC------c-hhhhcCCCCCEEECCC----CcccchHHHHh
Confidence 466788888887775 677777788888888888876543 3 4567788888888888 88776 77777
Q ss_pred cCCCCCcEEecccccccCCCCCCCCCcccc--cccccccCCCEEEecCCCcccccc----cccccccccccccc
Q 039475 113 ENLIHLRYLKLSAVEELSETCYCPSLKRLP--QGRGKLINLRHLIFDKDYLAYMAN----GFERLTSLRTLSGF 180 (286)
Q Consensus 113 ~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP--~~i~~L~~L~~L~l~~~~~~~lP~----~i~~L~~L~~L~~~ 180 (286)
+.+++|++|++++ +.+..+| ..++.+++|++|++++|.+..+|. .++.+++|+.|++.
T Consensus 85 ~~l~~L~~L~ls~----------N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 85 EKCPNLTHLNLSG----------NKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHCTTCCEEECTT----------SCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hhCCCCCEEECCC----------CcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7788888888875 5577665 678888888888888888887765 47788888877654
No 80
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.48 E-value=3.5e-13 Score=128.79 Aligned_cols=170 Identities=19% Similarity=0.161 Sum_probs=136.0
Q ss_pred cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475 36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL 115 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L 115 (286)
...++.|.+..+.+..++ .+..+++|+.|++++|.... ++. +..++.|++|+|++ |.+..+| .++.+
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~------~~~-l~~l~~L~~L~Ls~----N~l~~l~-~l~~l 108 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD------IKP-LTNLKNLGWLFLDE----NKIKDLS-SLKDL 108 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCC------CGG-GGGCTTCCEEECCS----SCCCCCT-TSTTC
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCC------Chh-hccCCCCCEEECcC----CCCCCCh-hhccC
Confidence 456788888888776665 58889999999999998654 344 78999999999999 9998877 79999
Q ss_pred CCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCC
Q 039475 116 IHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACN 195 (286)
Q Consensus 116 ~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~ 195 (286)
.+|++|+|++ +.+..+| .+..+++|+.|++++|.+..+ ..++.+++|+.|++..+... .
T Consensus 109 ~~L~~L~Ls~----------N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~---------~ 167 (605)
T 1m9s_A 109 KKLKSLSLEH----------NGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQIS---------D 167 (605)
T ss_dssp TTCCEEECTT----------SCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCC---------C
T ss_pred CCCCEEEecC----------CCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCC---------C
Confidence 9999999986 6677775 589999999999999999888 57999999999998877644 1
Q ss_pred cccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475 196 LEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED 245 (286)
Q Consensus 196 ~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 245 (286)
+..+..+++|+ .|.+.+..- .+ + ..+..+++|+.|+|+.|....
T Consensus 168 ~~~l~~l~~L~-~L~Ls~N~i---~~-l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 168 IVPLAGLTKLQ-NLYLSKNHI---SD-L-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CGGGTTCTTCC-EEECCSSCC---CB-C-GGGTTCTTCSEEECCSEEEEC
T ss_pred chhhccCCCCC-EEECcCCCC---CC-C-hHHccCCCCCEEEccCCcCcC
Confidence 22277777777 788775411 11 1 458889999999999887653
No 81
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.47 E-value=5.3e-14 Score=123.83 Aligned_cols=132 Identities=14% Similarity=0.090 Sum_probs=81.8
Q ss_pred CCceEEEeecCCCCCCc-hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475 37 EKLRHLTLMLGLPTKFP-VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL 115 (286)
Q Consensus 37 ~~~r~ls~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L 115 (286)
.+++++.+..+.+..++ ..+..+++|++|++++|.... .+. |..++.|++|++++ |.+..+|. .
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~-~~~l~~L~~L~Ls~----n~l~~l~~----~ 98 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE------TLD-LESLSTLRTLDLNN----NYVQELLV----G 98 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE------EEE-ETTCTTCCEEECCS----SEEEEEEE----C
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc------chh-hhhcCCCCEEECcC----CccccccC----C
Confidence 46888888888875554 578888999999998887643 222 77888888888888 77766552 2
Q ss_pred CCCcEEeccc--ccccCCC-C--------CCCCCcccc-cccccccCCCEEEecCCCccccc-ccc-ccccccccccccc
Q 039475 116 IHLRYLKLSA--VEELSET-C--------YCPSLKRLP-QGRGKLINLRHLIFDKDYLAYMA-NGF-ERLTSLRTLSGFT 181 (286)
Q Consensus 116 ~~Lr~L~L~~--~~~LP~~-~--------~~~~l~~LP-~~i~~L~~L~~L~l~~~~~~~lP-~~i-~~L~~L~~L~~~~ 181 (286)
.+|++|++++ +..+|.. . ..+.+..++ ..++.+++|++|++++|.+..++ ..+ +.+++|++|++..
T Consensus 99 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp TTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 5555555554 3333322 1 223344443 35566666666666666666543 233 3556666666555
Q ss_pred cc
Q 039475 182 VA 183 (286)
Q Consensus 182 ~~ 183 (286)
+.
T Consensus 179 N~ 180 (317)
T 3o53_A 179 NF 180 (317)
T ss_dssp SC
T ss_pred Cc
Confidence 43
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.47 E-value=1e-13 Score=129.24 Aligned_cols=177 Identities=15% Similarity=0.082 Sum_probs=130.3
Q ss_pred EeecCCCCCCchhhhcCC----CCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCC
Q 039475 43 TLMLGLPTKFPVSIFDAK----KLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHL 118 (286)
Q Consensus 43 s~~~~~~~~~~~~~~~l~----~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~L 118 (286)
.+..-....+|..+..+. +|++|+++++..... .|..|..++.|++|+|++ |.+..+++ ++.+++|
T Consensus 13 ~~~~~~~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~----N~l~~~~~-l~~l~~L 82 (487)
T 3oja_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-----SAADLAPFTKLELLNLSS----NVLYETLD-LESLSTL 82 (487)
T ss_dssp EEESCCTTTHHHHHHTTSTTGGGCCEEECCSSCCCCC-----CGGGGTTCTTCCEEECTT----SCCEEEEE-CTTCTTC
T ss_pred ecccCchhhhHHHHHHhcccCCCccEEEeeCCcCCCC-----CHHHHhCCCCCCEEEeeC----CCCCCCcc-cccCCCC
Confidence 333333344566666555 899999999987643 678899999999999999 99887665 9999999
Q ss_pred cEEeccc--ccccCCC-C------CCCCCcccccccccccCCCEEEecCCCccccc-ccccccccccccccccccccCCc
Q 039475 119 RYLKLSA--VEELSET-C------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMA-NGFERLTSLRTLSGFTVARVGGK 188 (286)
Q Consensus 119 r~L~L~~--~~~LP~~-~------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP-~~i~~L~~L~~L~~~~~~~~~~~ 188 (286)
++|+|++ +..+|.. . ..+.+..+|.. .+++|++|++++|.+..++ ..++.+++|++|++..+...
T Consensus 83 ~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--- 157 (487)
T 3oja_A 83 RTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID--- 157 (487)
T ss_dssp CEEECCSSEEEEEEECTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC---
T ss_pred CEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC---
Confidence 9999998 6666644 2 33446666543 5788999999999999774 46999999999998877654
Q ss_pred cCCCCCCccccc-CcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 189 YSSEACNLEGLR-NLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 189 ~~~~~~~~~~l~-~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
+..+..+. .+++|+ .|.+.+..- .. . .....+++|+.|+|++|..+
T Consensus 158 ----~~~~~~l~~~l~~L~-~L~Ls~N~l-~~---~-~~~~~l~~L~~L~Ls~N~l~ 204 (487)
T 3oja_A 158 ----TVNFAELAASSDTLE-HLNLQYNFI-YD---V-KGQVVFAKLKTLDLSSNKLA 204 (487)
T ss_dssp ----EEEGGGGGGGTTTCC-EEECTTSCC-CE---E-ECCCCCTTCCEEECCSSCCC
T ss_pred ----CcChHHHhhhCCccc-EEecCCCcc-cc---c-cccccCCCCCEEECCCCCCC
Confidence 23344443 567777 787775421 11 1 23446899999999999887
No 83
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=1.4e-13 Score=134.38 Aligned_cols=112 Identities=22% Similarity=0.247 Sum_probs=75.6
Q ss_pred chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCC
Q 039475 53 PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSET 132 (286)
Q Consensus 53 ~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~ 132 (286)
+..+..++.|+.|++++|.... +|..+.+++.|++|+|++ |.+..+|.+|++|.+|++|+|++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~------l~~~~~~l~~L~~L~Ls~----N~l~~lp~~~~~l~~L~~L~Ls~------- 279 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFN------ISANIFKYDFLTRLYLNG----NSLTELPAEIKNLSNLRVLDLSH------- 279 (727)
T ss_dssp -----CCCCCCEEECTTSCCSC------CCGGGGGCCSCSCCBCTT----SCCSCCCGGGGGGTTCCEEECTT-------
T ss_pred hhhhccCCCCcEEECCCCCCCC------CChhhcCCCCCCEEEeeC----CcCcccChhhhCCCCCCEEeCcC-------
Confidence 4445666777777777766542 444445677777777777 77777777777777777777764
Q ss_pred CCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccc
Q 039475 133 CYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVAR 184 (286)
Q Consensus 133 ~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~ 184 (286)
+.+..+|.+|++|++|++|++++|.+..+|.+|++|++|++|++..+..
T Consensus 280 ---N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 280 ---NRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp ---SCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred ---CcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence 5577777777777777777777777777777777777777777766543
No 84
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.46 E-value=3.5e-13 Score=130.14 Aligned_cols=172 Identities=17% Similarity=0.126 Sum_probs=128.3
Q ss_pred EEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-CccccCCCCCc
Q 039475 41 HLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKGLENLIHLR 119 (286)
Q Consensus 41 ~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i~~L~~Lr 119 (286)
.+.........+|..+. +++++|+++++..... .+..|.++++|++|++++ +.+..+ |..++++++|+
T Consensus 8 ~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~~~~l~~L~ 76 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRL-----PAANFTRYSQLTSLDVGF----NTISKLEPELCQKLPMLK 76 (680)
T ss_dssp EEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCC-----CGGGGGGGTTCSEEECCS----SCCCCCCTTHHHHCTTCC
T ss_pred eeECCCCCccccccccC--CCCcEEECCCCCCCCc-----CHHHHhCCCcCcEEECCC----CccCccCHHHHhcccCcC
Confidence 45555555566776653 7999999999986542 566799999999999999 988866 66889999999
Q ss_pred EEecccccccCCCCCCCCCccccc-ccccccCCCEEEecCCCcccccc-cccccccccccccccccccCCccCCCCCCcc
Q 039475 120 YLKLSAVEELSETCYCPSLKRLPQ-GRGKLINLRHLIFDKDYLAYMAN-GFERLTSLRTLSGFTVARVGGKYSSEACNLE 197 (286)
Q Consensus 120 ~L~L~~~~~LP~~~~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~ 197 (286)
+|++++ +.+..+|. .|+++++|++|++++|.+..+|+ .|+++++|++|++..+... +....
T Consensus 77 ~L~L~~----------n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------~~~~~ 139 (680)
T 1ziw_A 77 VLNLQH----------NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS-------STKLG 139 (680)
T ss_dssp EEECCS----------SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS-------CCCCC
T ss_pred EEECCC----------CccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccc-------ccCch
Confidence 999986 66888886 58899999999999988888774 5899999999988877544 33445
Q ss_pred cccCcccccceeEEcccCCcccchhhhhh--cCCCCCCceEEEEeCCCC
Q 039475 198 GLRNLNHLRQFLRICGLGNLQMRLKINAH--LEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 198 ~l~~L~~L~~~L~i~~l~~~~~~~~~~~~--l~~l~~L~~L~L~~~~~~ 244 (286)
.+.++++|+ .|.+.+..- .. ..+.. ...+++|+.|++++|...
T Consensus 140 ~~~~l~~L~-~L~L~~n~l-~~--~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 140 TQVQLENLQ-ELLLSNNKI-QA--LKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp SSSCCTTCC-EEECCSSCC-CC--BCHHHHGGGTTCEESEEECTTCCCC
T ss_pred hhcccccCC-EEEccCCcc-cc--cCHHHhhccccccccEEECCCCccc
Confidence 566777777 777765321 11 11122 234578888888888665
No 85
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=5.2e-13 Score=111.50 Aligned_cols=122 Identities=19% Similarity=0.268 Sum_probs=59.2
Q ss_pred EEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cccCCCCCc
Q 039475 41 HLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLENLIHLR 119 (286)
Q Consensus 41 ~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~L~~Lr 119 (286)
.+.+..+....+|..+ ...++.|++++|...... .+..|..++.|++|+|++ +.+..++. .++++.+|+
T Consensus 15 ~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~----~~~~~~~l~~L~~L~L~~----N~i~~i~~~~~~~l~~L~ 84 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLE----ATGIFKKLPQLRKINFSN----NKITDIEEGAFEGASGVN 84 (220)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEEC----CCCCGGGCTTCCEEECCS----SCCCEECTTTTTTCTTCC
T ss_pred EeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccC----chhhhccCCCCCEEECCC----CcCCEECHHHhCCCCCCC
Confidence 4444444444444433 233455555555443210 112345555555555555 55554443 455555555
Q ss_pred EEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCcccc-cccccccccccccccccc
Q 039475 120 YLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYM-ANGFERLTSLRTLSGFTV 182 (286)
Q Consensus 120 ~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~l-P~~i~~L~~L~~L~~~~~ 182 (286)
+|+|++ +.+..+|.. +..+++|++|++++|.+..+ |..|+.+++|++|++..+
T Consensus 85 ~L~Ls~----------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 139 (220)
T 2v70_A 85 EILLTS----------NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139 (220)
T ss_dssp EEECCS----------SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS
T ss_pred EEECCC----------CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC
Confidence 555553 444444432 45555555555555555544 233555555555555444
No 86
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.46 E-value=5.1e-13 Score=127.18 Aligned_cols=138 Identities=20% Similarity=0.183 Sum_probs=112.5
Q ss_pred CCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cccCCCCCcEEeccccc
Q 039475 49 PTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLENLIHLRYLKLSAVE 127 (286)
Q Consensus 49 ~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~L~~Lr~L~L~~~~ 127 (286)
...+|..+ -+.+++|++++|..... .+..|.++++|++|+|++ |.+..+|+ +|++|++|++|+|++
T Consensus 43 l~~vP~~l--p~~~~~LdLs~N~i~~l-----~~~~f~~l~~L~~L~Ls~----N~i~~i~~~~f~~L~~L~~L~Ls~-- 109 (635)
T 4g8a_A 43 FYKIPDNL--PFSTKNLDLSFNPLRHL-----GSYSFFSFPELQVLDLSR----CEIQTIEDGAYQSLSHLSTLILTG-- 109 (635)
T ss_dssp CSSCCSSS--CTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECTT----CCCCEECTTTTTTCTTCCEEECTT--
T ss_pred cCccCCCC--CcCCCEEEeeCCCCCCC-----CHHHHhCCCCCCEEECCC----CcCCCcChhHhcCCCCCCEEEccC--
Confidence 35677655 35899999999987542 567899999999999999 99998876 689999999999996
Q ss_pred ccCCCCCCCCCccccc-ccccccCCCEEEecCCCccccccc-ccccccccccccccccccCCccCCCCCCcccccCcccc
Q 039475 128 ELSETCYCPSLKRLPQ-GRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHL 205 (286)
Q Consensus 128 ~LP~~~~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L 205 (286)
+.++.+|. .|.++++|++|++++|.+..+|.. |+++++|++|++..+... .......++.+++|
T Consensus 110 --------N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~------~~~~~~~~~~l~~L 175 (635)
T 4g8a_A 110 --------NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ------SFKLPEYFSNLTNL 175 (635)
T ss_dssp --------CCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC------CCCCCGGGGGCTTC
T ss_pred --------CcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccc------cCCCchhhccchhh
Confidence 67999986 579999999999999999999875 999999999999877654 12334456667777
Q ss_pred cceeEEccc
Q 039475 206 RQFLRICGL 214 (286)
Q Consensus 206 ~~~L~i~~l 214 (286)
+ .|.+.+.
T Consensus 176 ~-~L~L~~N 183 (635)
T 4g8a_A 176 E-HLDLSSN 183 (635)
T ss_dssp C-EEECCSS
T ss_pred h-hhcccCc
Confidence 7 7777643
No 87
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=3.4e-13 Score=112.65 Aligned_cols=132 Identities=15% Similarity=0.144 Sum_probs=112.3
Q ss_pred ccCCceEEEeecCCCCCCc--hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-c
Q 039475 35 CQEKLRHLTLMLGLPTKFP--VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-G 111 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~~--~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~ 111 (286)
++..++.+.+..+.+..++ ..+..+++|++|++.+|..... .+..|.+++.|++|+|++ |.+..+|. .
T Consensus 30 ~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-----~~~~~~~l~~L~~L~Ls~----N~l~~~~~~~ 100 (220)
T 2v70_A 30 IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-----EEGAFEGASGVNEILLTS----NRLENVQHKM 100 (220)
T ss_dssp CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-----CTTTTTTCTTCCEEECCS----SCCCCCCGGG
T ss_pred CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-----CHHHhCCCCCCCEEECCC----CccCccCHhH
Confidence 4566889999999886653 3478999999999999986542 566899999999999999 99998876 4
Q ss_pred ccCCCCCcEEecccccccCCCCCCCCCccc-ccccccccCCCEEEecCCCcccc-ccccccccccccccccccccc
Q 039475 112 LENLIHLRYLKLSAVEELSETCYCPSLKRL-PQGRGKLINLRHLIFDKDYLAYM-ANGFERLTSLRTLSGFTVARV 185 (286)
Q Consensus 112 i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~L-P~~i~~L~~L~~L~l~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~ 185 (286)
++.+.+|++|+|++ +.+..+ |..+..+++|++|++++|.+..+ |..|+.+++|++|++..+...
T Consensus 101 ~~~l~~L~~L~Ls~----------N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 101 FKGLESLKTLMLRS----------NRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp GTTCSSCCEEECTT----------SCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred hcCCcCCCEEECCC----------CcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 89999999999996 778877 67789999999999999999988 566999999999998877544
No 88
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.46 E-value=1e-13 Score=130.82 Aligned_cols=171 Identities=16% Similarity=0.139 Sum_probs=101.8
Q ss_pred hcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEeccc--ccccCC-C-
Q 039475 57 FDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSA--VEELSE-T- 132 (286)
Q Consensus 57 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~--~~~LP~-~- 132 (286)
..+++|+.|+++++....... .+..+..++.|++|++++ +.+..+|..++.+.+|++|++++ +..++. .
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~---~~~~~~~~~~L~~L~l~~----n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGC---CSQSDFGTTSLKYLDLSF----NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEE---EEHHHHTCSCCCEEECCS----CSEEEEEEEEETCTTCCEEECTTSEEESCTTSCT
T ss_pred ccCCCCCEEeCcCCccCcccc---ccccccccCccCEEECCC----CccccccccccccCCCCEEEccCCccccccchhh
Confidence 345666666666665432111 255667778888888888 77777777777888888888876 443322 1
Q ss_pred -CCCCCCc-----------ccccccccccCCCEEEecCCCcc--cccccccccccccccccccccccCCccCCCCCCccc
Q 039475 133 -CYCPSLK-----------RLPQGRGKLINLRHLIFDKDYLA--YMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEG 198 (286)
Q Consensus 133 -~~~~~l~-----------~LP~~i~~L~~L~~L~l~~~~~~--~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~ 198 (286)
..+.+++ ..|..++++++|++|++++|.+. .+|..++.+++|++|++..+... ......
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~-------~~~~~~ 489 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-------QLSPTA 489 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-------EECTTT
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccc-------cCChhh
Confidence 2222222 23556667777777777777665 46666777777777776665433 223344
Q ss_pred ccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475 199 LRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED 245 (286)
Q Consensus 199 l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 245 (286)
+..+++|+ .|.+.+.. + ....+..+..+++|+.|+++.|....
T Consensus 490 ~~~l~~L~-~L~l~~n~-l--~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 490 FNSLSSLQ-VLNMASNQ-L--KSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTTCTTCC-EEECCSSC-C--SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhcccCCC-EEeCCCCc-C--CCCCHHHhhcccCCcEEEecCCcccC
Confidence 55566666 66665431 1 22223446667777777777776653
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.45 E-value=3.3e-13 Score=113.79 Aligned_cols=173 Identities=11% Similarity=0.106 Sum_probs=132.0
Q ss_pred cCCceEEEeecCC-CCCCch-hhhcCCCCcEEEecc-CCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccc
Q 039475 36 QEKLRHLTLMLGL-PTKFPV-SIFDAKKLRSLSLFY-DSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGL 112 (286)
Q Consensus 36 ~~~~r~ls~~~~~-~~~~~~-~~~~l~~Lr~L~l~~-~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i 112 (286)
..+++.+.+..+. ...+++ .+..+++|++|++.+ +..... .+..|.+++.|++|++++ +.+..+|. +
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-----~~~~f~~l~~L~~L~l~~----n~l~~lp~-~ 123 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-----DPDALKELPLLKFLGIFN----TGLKMFPD-L 123 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-----CTTSEECCTTCCEEEEEE----ECCCSCCC-C
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-----CHHHhCCCCCCCEEeCCC----CCCccccc-c
Confidence 4678999999986 666654 688999999999998 765432 456789999999999999 99999997 8
Q ss_pred cCCCCCc---EEecccccccCCCCCCCCCcccccc-cccccCCC-EEEecCCCccccccccccccccccccccccc-ccC
Q 039475 113 ENLIHLR---YLKLSAVEELSETCYCPSLKRLPQG-RGKLINLR-HLIFDKDYLAYMANGFERLTSLRTLSGFTVA-RVG 186 (286)
Q Consensus 113 ~~L~~Lr---~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~-~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~-~~~ 186 (286)
+.+.+|+ +|++++ +..+..+|.. +.++++|+ +|++++|.+..+|......++|++|++..+. ..
T Consensus 124 ~~l~~L~~L~~L~l~~---------N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~- 193 (239)
T 2xwt_C 124 TKVYSTDIFFILEITD---------NPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLT- 193 (239)
T ss_dssp TTCCBCCSEEEEEEES---------CTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCC-
T ss_pred ccccccccccEEECCC---------CcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcc-
Confidence 8888888 999995 3278888864 89999999 9999999999999875555899999988773 32
Q ss_pred CccCCCCCCcccccCc-ccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeC
Q 039475 187 GKYSSEACNLEGLRNL-NHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFD 241 (286)
Q Consensus 187 ~~~~~~~~~~~~l~~L-~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~ 241 (286)
......+..+ ++|+ .|.+.+.. +. .++.. .+++|+.|+++.+
T Consensus 194 ------~i~~~~~~~l~~~L~-~L~l~~N~-l~---~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 194 ------VIDKDAFGGVYSGPS-LLDVSQTS-VT---ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp ------EECTTTTTTCSBCCS-EEECTTCC-CC---CCCCT--TCTTCSEEECTTC
T ss_pred ------cCCHHHhhccccCCc-EEECCCCc-cc---cCChh--HhccCceeeccCc
Confidence 2233445666 7777 78776531 11 12222 5778888887644
No 90
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.44 E-value=8.2e-13 Score=108.95 Aligned_cols=166 Identities=24% Similarity=0.330 Sum_probs=126.3
Q ss_pred eEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-ccCCCCC
Q 039475 40 RHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-LENLIHL 118 (286)
Q Consensus 40 r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i~~L~~L 118 (286)
+.+....+....+|..+ .++|+.|++.++..... .+..|..++.|++|++++ +.+..+|.. ++.+.+|
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~----n~l~~~~~~~~~~l~~L 78 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSL-----PNGVFDELTSLTQLYLGG----NKLQSLPNGVFNKLTSL 78 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCC-----CTTTTTTCTTCSEEECCS----SCCCCCCTTTTTTCTTC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcC-----ChhhhcccccCcEEECCC----CccCccChhhcCCCCCc
Confidence 44555555556666554 56999999999986532 566789999999999999 999988875 5899999
Q ss_pred cEEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCccccccc-ccccccccccccccccccCCccCCCCCCc
Q 039475 119 RYLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARVGGKYSSEACNL 196 (286)
Q Consensus 119 r~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~ 196 (286)
++|++++ +.+..+|.. ++++++|++|++++|.+..+|.. ++++++|++|++..+... ....
T Consensus 79 ~~L~Ls~----------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-------~~~~ 141 (208)
T 2o6s_A 79 TYLNLST----------NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-------SVPD 141 (208)
T ss_dssp CEEECCS----------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-------CCCT
T ss_pred CEEECCC----------CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-------eeCH
Confidence 9999996 678888865 68999999999999999988876 899999999999877544 2233
Q ss_pred ccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 197 EGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 197 ~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
..+..+++|+ .|.+.+.... +.+++|+.|+++.|+..
T Consensus 142 ~~~~~l~~L~-~L~l~~N~~~----------~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 142 GVFDRLTSLQ-YIWLHDNPWD----------CTCPGIRYLSEWINKHS 178 (208)
T ss_dssp TTTTTCTTCC-EEECCSCCBC----------CCTTTTHHHHHHHHHCT
T ss_pred HHhccCCCcc-EEEecCCCee----------cCCCCHHHHHHHHHhCC
Confidence 3466777777 7888754221 23456666766666555
No 91
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.44 E-value=4.9e-13 Score=123.71 Aligned_cols=149 Identities=19% Similarity=0.161 Sum_probs=114.7
Q ss_pred chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCC
Q 039475 53 PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSET 132 (286)
Q Consensus 53 ~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~ 132 (286)
+..+.++++|++|+++++.... +| .|..++.|++|++++ +.+..+| ++.+++|++|++++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~------~~-~l~~l~~L~~L~Ls~----n~l~~~~--~~~l~~L~~L~Ls~------- 94 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITD------MT-GIEKLTGLTKLICTS----NNITTLD--LSQNTNLTYLACDS------- 94 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCC------CT-TGGGCTTCSEEECCS----SCCSCCC--CTTCTTCSEEECCS-------
T ss_pred ccChhHcCCCCEEEccCCCccc------Ch-hhcccCCCCEEEccC----CcCCeEc--cccCCCCCEEECcC-------
Confidence 4567889999999999997654 45 578999999999999 9999886 99999999999996
Q ss_pred CCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEc
Q 039475 133 CYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRIC 212 (286)
Q Consensus 133 ~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~ 212 (286)
+.++.+| ++++++|++|++++|.+..+| ++++++|++|++..+... +. .++++++|+ .|.+.
T Consensus 95 ---N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~-------~l---~l~~l~~L~-~L~l~ 156 (457)
T 3bz5_A 95 ---NKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLT-------EI---DVSHNTQLT-ELDCH 156 (457)
T ss_dssp ---SCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCS-------CC---CCTTCTTCC-EEECT
T ss_pred ---CCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccc-------ee---ccccCCcCC-EEECC
Confidence 6688886 899999999999999999886 899999999998877654 21 255566666 66665
Q ss_pred ccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 213 GLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 213 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
+...... + .+..+++|+.|++++|+.+
T Consensus 157 ~n~~~~~---~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 157 LNKKITK---L--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp TCSCCCC---C--CCTTCTTCCEEECCSSCCC
T ss_pred CCCcccc---c--ccccCCcCCEEECCCCccc
Confidence 4322211 1 2455566666666666554
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.44 E-value=2.6e-13 Score=118.95 Aligned_cols=180 Identities=17% Similarity=0.015 Sum_probs=115.3
Q ss_pred CceEEEeecCCCC-CCchhh--hcCCCCcEEEeccCCCCCCCcCccch-hhhcCCCCCcEEEeecccCCccCcccC-ccc
Q 039475 38 KLRHLTLMLGLPT-KFPVSI--FDAKKLRSLSLFYDSKGQSAASPVLQ-GLFDQLTCLRALKIEELWYGDQTIEIP-KGL 112 (286)
Q Consensus 38 ~~r~ls~~~~~~~-~~~~~~--~~l~~Lr~L~l~~~~~~~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~i~~lP-~~i 112 (286)
+++++.+..+... ..|..+ ..+++|++|++++|....... .++ ..+..++.|++|++++ |.+..+| ..+
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~--~~~~~~~~~~~~L~~L~Ls~----n~l~~~~~~~~ 165 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRS--WLAELQQWLKPGLKVLSIAQ----AHSPAFSCEQV 165 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS--SHHHHHTTBCSCCCEEEEEC----CSSCCCCTTSC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhh--hhHHHHhhhccCCCEEEeeC----CCcchhhHHHh
Confidence 3777777777663 445555 778888888888887553210 011 3345788888888888 8877665 577
Q ss_pred cCCCCCcEEecccccccCCCCCCCCCcc---ccc--ccccccCCCEEEecCCCccccccc----cccccccccccccccc
Q 039475 113 ENLIHLRYLKLSAVEELSETCYCPSLKR---LPQ--GRGKLINLRHLIFDKDYLAYMANG----FERLTSLRTLSGFTVA 183 (286)
Q Consensus 113 ~~L~~Lr~L~L~~~~~LP~~~~~~~l~~---LP~--~i~~L~~L~~L~l~~~~~~~lP~~----i~~L~~L~~L~~~~~~ 183 (286)
+.+++|++|++++ +.+.. +|. .++++++|++|++++|.+..+|.. ++.+++|++|++..+.
T Consensus 166 ~~l~~L~~L~Ls~----------N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~ 235 (310)
T 4glp_A 166 RAFPALTSLDLSD----------NPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS 235 (310)
T ss_dssp CCCTTCCEEECCS----------CTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC
T ss_pred ccCCCCCEEECCC----------CCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC
Confidence 8888888888885 43432 432 346788888888888888766543 5677888888887776
Q ss_pred ccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 184 RVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 184 ~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
... ..+..+..+..+++|+ .|.+.+..- ..++..+. ++|+.|+|++|+.+
T Consensus 236 l~~----~~p~~~~~~~~~~~L~-~L~Ls~N~l----~~lp~~~~--~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 236 LRA----TVNPSAPRCMWSSALN-SLNLSFAGL----EQVPKGLP--AKLRVLDLSSNRLN 285 (310)
T ss_dssp CCC----CCCSCCSSCCCCTTCC-CEECCSSCC----CSCCSCCC--SCCSCEECCSCCCC
T ss_pred CCc----cchhhHHhccCcCcCC-EEECCCCCC----Cchhhhhc--CCCCEEECCCCcCC
Confidence 541 0012233333335666 677664311 12233332 68888888888876
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.44 E-value=5.7e-13 Score=118.87 Aligned_cols=90 Identities=16% Similarity=0.215 Sum_probs=61.1
Q ss_pred ccCCceEEEeecCCCCCCch-hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcE-EEeecccCCccCcccC-cc
Q 039475 35 CQEKLRHLTLMLGLPTKFPV-SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRA-LKIEELWYGDQTIEIP-KG 111 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~-L~L~~~~~~~~i~~lP-~~ 111 (286)
++.++++|.+..+.+..+|+ .|.++++|++|++++|..... +.+..|.+++.++. +.+.+ +.+..+| ..
T Consensus 28 l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~----i~~~~f~~L~~l~~~l~~~~----N~l~~l~~~~ 99 (350)
T 4ay9_X 28 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV----IEADVFSNLPKLHEIRIEKA----NNLLYINPEA 99 (350)
T ss_dssp CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCE----ECTTSBCSCTTCCEEEEEEE----TTCCEECTTS
T ss_pred cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCc----cChhHhhcchhhhhhhcccC----CcccccCchh
Confidence 56789999999999988875 578999999999999875321 02345666665543 45555 5666653 35
Q ss_pred ccCCCCCcEEeccc--ccccCCC
Q 039475 112 LENLIHLRYLKLSA--VEELSET 132 (286)
Q Consensus 112 i~~L~~Lr~L~L~~--~~~LP~~ 132 (286)
++.+++|++|++++ +..+|..
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~ 122 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPDV 122 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCCC
T ss_pred hhhccccccccccccccccCCch
Confidence 56677777777766 5555543
No 94
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.43 E-value=5.4e-13 Score=132.21 Aligned_cols=174 Identities=20% Similarity=0.153 Sum_probs=132.6
Q ss_pred eEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCcc-Cccc-CccccCCCC
Q 039475 40 RHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQ-TIEI-PKGLENLIH 117 (286)
Q Consensus 40 r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~-i~~l-P~~i~~L~~ 117 (286)
+.+....+....+|. -.++|++|++++|..... .+..|.++++|++|+|++ +. +..+ |..|+++++
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i-----~~~~~~~l~~L~~LdLs~----n~~~~~i~~~~f~~L~~ 74 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTV-----TASSFPFLEQLQLLELGS----QYTPLTIDKEAFRNLPN 74 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEE-----CSSSCSSCCSCSEEEECT----TCCCCEECTTTTSSCTT
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCcc-----ChhHCcccccCeEEeCCC----CCCccccCHHHhcCCCC
Confidence 344444555666776 468999999999986542 677899999999999999 84 5566 778999999
Q ss_pred CcEEecccccccCCCCCCCCCccc-ccccccccCCCEEEecCCCccc-cccc--ccccccccccccccccccCCccCCCC
Q 039475 118 LRYLKLSAVEELSETCYCPSLKRL-PQGRGKLINLRHLIFDKDYLAY-MANG--FERLTSLRTLSGFTVARVGGKYSSEA 193 (286)
Q Consensus 118 Lr~L~L~~~~~LP~~~~~~~l~~L-P~~i~~L~~L~~L~l~~~~~~~-lP~~--i~~L~~L~~L~~~~~~~~~~~~~~~~ 193 (286)
|++|+|++ +.+..+ |..|+++++|++|++++|.+.. +|.. ++++++|++|++..+.... .
T Consensus 75 L~~L~Ls~----------N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~------~ 138 (844)
T 3j0a_A 75 LRILDLGS----------SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS------L 138 (844)
T ss_dssp CCEEECTT----------CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC------C
T ss_pred CCEEECCC----------CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc------c
Confidence 99999996 667766 8899999999999999999885 5655 9999999999998876541 2
Q ss_pred CCcccccCcccccceeEEcccCCcccchhhhhhcCCC--CCCceEEEEeCCCCC
Q 039475 194 CNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKK--KNLVHLTLDFDKGED 245 (286)
Q Consensus 194 ~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l--~~L~~L~L~~~~~~~ 245 (286)
.....++++++|+ .|.+.+..- ....+..+..+ ++|+.|+++.|....
T Consensus 139 ~~~~~~~~L~~L~-~L~Ls~N~i---~~~~~~~l~~l~~~~L~~L~L~~n~l~~ 188 (844)
T 3j0a_A 139 YLHPSFGKLNSLK-SIDFSSNQI---FLVCEHELEPLQGKTLSFFSLAANSLYS 188 (844)
T ss_dssp CCCGGGGTCSSCC-EEEEESSCC---CCCCSGGGHHHHHCSSCCCEECCSBSCC
T ss_pred ccchhHhhCCCCC-EEECCCCcC---CeeCHHHcccccCCccceEECCCCcccc
Confidence 2234678888888 888875422 11122333333 789999999997764
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.43 E-value=5.7e-14 Score=124.08 Aligned_cols=187 Identities=19% Similarity=0.148 Sum_probs=114.2
Q ss_pred CCceEEEeecCCCCC--CchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCc-cCc--ccCcc
Q 039475 37 EKLRHLTLMLGLPTK--FPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGD-QTI--EIPKG 111 (286)
Q Consensus 37 ~~~r~ls~~~~~~~~--~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~-~i~--~lP~~ 111 (286)
.+++++.+..+.... ++..+..+++|++|++.++..... .+..+..+++|++|++++ + .+. .+|..
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~-----~~~~l~~~~~L~~L~L~~----~~~l~~~~l~~~ 163 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP-----IVNTLAKNSNLVRLNLSG----CSGFSEFALQTL 163 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH-----HHHHHTTCTTCSEEECTT----CBSCCHHHHHHH
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHH-----HHHHHhcCCCCCEEECCC----CCCCCHHHHHHH
Confidence 456666666655421 445556666666666666643221 444555566666666666 5 344 24545
Q ss_pred ccCCCCCcEEeccc---ccc--cCCC-C------------CCC-CC--cccccccccccCCCEEEecCCC-cc-cccccc
Q 039475 112 LENLIHLRYLKLSA---VEE--LSET-C------------YCP-SL--KRLPQGRGKLINLRHLIFDKDY-LA-YMANGF 168 (286)
Q Consensus 112 i~~L~~Lr~L~L~~---~~~--LP~~-~------------~~~-~l--~~LP~~i~~L~~L~~L~l~~~~-~~-~lP~~i 168 (286)
++++++|++|++++ +.. +|.. . +|. .+ ..+|..+.++++|++|++++|. +. ..+..+
T Consensus 164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 243 (336)
T 2ast_B 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 243 (336)
T ss_dssp HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH
Confidence 55555666665543 111 1111 1 232 23 4578888899999999999998 54 567789
Q ss_pred cccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475 169 ERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED 245 (286)
Q Consensus 169 ~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 245 (286)
+++++|++|++..+... ....+..++++++|+ .|.+.++ +.. +.+ ..+. .++..|++++|..+.
T Consensus 244 ~~l~~L~~L~l~~~~~~------~~~~~~~l~~~~~L~-~L~l~~~--i~~-~~~-~~l~--~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 244 FQLNYLQHLSLSRCYDI------IPETLLELGEIPTLK-TLQVFGI--VPD-GTL-QLLK--EALPHLQINCSHFTT 307 (336)
T ss_dssp GGCTTCCEEECTTCTTC------CGGGGGGGGGCTTCC-EEECTTS--SCT-TCH-HHHH--HHSTTSEESCCCSCC
T ss_pred hCCCCCCEeeCCCCCCC------CHHHHHHHhcCCCCC-EEeccCc--cCH-HHH-HHHH--hhCcceEEecccCcc
Confidence 99999999999887522 244455677788888 8888865 322 111 1121 246667799998874
No 96
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.42 E-value=2e-13 Score=120.17 Aligned_cols=118 Identities=17% Similarity=0.122 Sum_probs=94.9
Q ss_pred hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEeccc--ccccCCC-
Q 039475 56 IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSA--VEELSET- 132 (286)
Q Consensus 56 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~--~~~LP~~- 132 (286)
+..+++|+.|+++++..... .|..|.++++|++|++++ |.+..+++ ++.+.+|++|++++ +..+|..
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~Ls~----n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~ 99 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQI-----SAADLAPFTKLELLNLSS----NVLYETLD-LESLSTLRTLDLNNNYVQELLVGP 99 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCC-----CHHHHTTCTTCCEEECTT----SCCEEEEE-ETTCTTCCEEECCSSEEEEEEECT
T ss_pred hccCCCCCEEECcCCccCcC-----CHHHhhCCCcCCEEECCC----CcCCcchh-hhhcCCCCEEECcCCccccccCCC
Confidence 45567999999999986543 678899999999999999 99887775 99999999999998 6666543
Q ss_pred C------CCCCCcccccccccccCCCEEEecCCCcccccc-ccccccccccccccccccc
Q 039475 133 C------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMAN-GFERLTSLRTLSGFTVARV 185 (286)
Q Consensus 133 ~------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~ 185 (286)
. ..+.+..+|.. .+++|++|++++|.+..+++ .++.+++|++|++..+...
T Consensus 100 ~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 100 SIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp TCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred CcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence 2 33446666643 47889999999999998765 5999999999998876544
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.42 E-value=5e-13 Score=127.68 Aligned_cols=150 Identities=18% Similarity=0.169 Sum_probs=123.6
Q ss_pred hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCC
Q 039475 56 IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYC 135 (286)
Q Consensus 56 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~ 135 (286)
+..+++|+.|.+.++.... ++ .|..+++|++|+|++ |.+..+|. ++.+.+|++|+|++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~------l~-~l~~l~~L~~L~Ls~----N~l~~~~~-l~~l~~L~~L~Ls~---------- 96 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS------VQ-GIQYLPNVTKLFLNG----NKLTDIKP-LTNLKNLGWLFLDE---------- 96 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC------CT-TGGGCTTCCEEECTT----SCCCCCGG-GGGCTTCCEEECCS----------
T ss_pred hhcCCCCCEEECcCCCCCC------Ch-HHccCCCCCEEEeeC----CCCCCChh-hccCCCCCEEECcC----------
Confidence 5678999999999987643 44 478999999999999 99998886 99999999999996
Q ss_pred CCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccC
Q 039475 136 PSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLG 215 (286)
Q Consensus 136 ~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~ 215 (286)
+.+..+| .++.+++|++|++++|.+..+| .++.|++|+.|++..+... .+..+..+++|+ .|.+.+..
T Consensus 97 N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~---------~l~~l~~l~~L~-~L~Ls~N~ 164 (605)
T 1m9s_A 97 NKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKIT---------DITVLSRLTKLD-TLSLEDNQ 164 (605)
T ss_dssp SCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCC---------CCGGGGSCTTCS-EEECCSSC
T ss_pred CCCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccC---------CchhhcccCCCC-EEECcCCc
Confidence 6688877 7999999999999999998874 6999999999999887644 236677888888 78887542
Q ss_pred CcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 216 NLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 216 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
- .... . +..+++|+.|+|+.|...
T Consensus 165 l---~~~~-~-l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 165 I---SDIV-P-LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp C---CCCG-G-GTTCTTCCEEECCSSCCC
T ss_pred C---CCch-h-hccCCCCCEEECcCCCCC
Confidence 1 1222 2 889999999999999886
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=2.4e-12 Score=110.44 Aligned_cols=142 Identities=17% Similarity=0.157 Sum_probs=113.3
Q ss_pred cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475 36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL 115 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L 115 (286)
...++.+.+..+.+..++ .+..+++|+.|++++|.... ++. +.+++.|++|++++ |.+..+|....
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~------~~~-l~~l~~L~~L~L~~----N~l~~l~~~~~-- 105 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISD------LSP-LKDLTKLEELSVNR----NRLKNLNGIPS-- 105 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC------CGG-GTTCSSCCEEECCS----SCCSCCTTCCC--
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCC------Chh-hccCCCCCEEECCC----CccCCcCcccc--
Confidence 467899999998887776 68889999999999998654 444 88999999999999 99998886444
Q ss_pred CCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCC
Q 039475 116 IHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACN 195 (286)
Q Consensus 116 ~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~ 195 (286)
.+|++|++++ +.++.+| .++++++|++|++++|.+..+| .++.+++|++|++..+.... .
T Consensus 106 ~~L~~L~L~~----------N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~------~-- 165 (263)
T 1xeu_A 106 ACLSRLFLDN----------NELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITN------T-- 165 (263)
T ss_dssp SSCCEEECCS----------SCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCB------C--
T ss_pred CcccEEEccC----------CccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcc------h--
Confidence 8999999986 6677776 5888999999999999888886 68888999999888776541 1
Q ss_pred cccccCcccccceeEEcc
Q 039475 196 LEGLRNLNHLRQFLRICG 213 (286)
Q Consensus 196 ~~~l~~L~~L~~~L~i~~ 213 (286)
..+..+++|+ .|.+.+
T Consensus 166 -~~l~~l~~L~-~L~l~~ 181 (263)
T 1xeu_A 166 -GGLTRLKKVN-WIDLTG 181 (263)
T ss_dssp -TTSTTCCCCC-EEEEEE
T ss_pred -HHhccCCCCC-EEeCCC
Confidence 4556666666 666654
No 99
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=7.8e-13 Score=106.35 Aligned_cols=125 Identities=19% Similarity=0.139 Sum_probs=71.8
Q ss_pred CCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccc-cCC
Q 039475 37 EKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGL-ENL 115 (286)
Q Consensus 37 ~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i-~~L 115 (286)
.+++.+.+..+.+..++......++|+.|++++|.... + ..|..++.|++|++++ |.+..+|..+ +.+
T Consensus 19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~------~-~~l~~l~~L~~L~Ls~----N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK------L-DGFPLLRRLKTLLVNN----NRICRIGEGLDQAL 87 (176)
T ss_dssp TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE------E-CCCCCCSSCCEEECCS----SCCCEECSCHHHHC
T ss_pred CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc------c-cccccCCCCCEEECCC----CcccccCcchhhcC
Confidence 44566666666555443322222366666666665432 2 3355666666666666 6666666544 666
Q ss_pred CCCcEEecccccccCCCCCCCCCccccc--ccccccCCCEEEecCCCccccccc----ccccccccccccccc
Q 039475 116 IHLRYLKLSAVEELSETCYCPSLKRLPQ--GRGKLINLRHLIFDKDYLAYMANG----FERLTSLRTLSGFTV 182 (286)
Q Consensus 116 ~~Lr~L~L~~~~~LP~~~~~~~l~~LP~--~i~~L~~L~~L~l~~~~~~~lP~~----i~~L~~L~~L~~~~~ 182 (286)
++|++|++++ +.+..+|. .++.+++|++|++++|.+..+|.. ++.+++|++|++..+
T Consensus 88 ~~L~~L~L~~----------N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 88 PDLTELILTN----------NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp TTCCEEECCS----------CCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCCEEECCC----------CcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 6666666664 45556665 566666666666666666666553 566666666655444
No 100
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.40 E-value=7.5e-13 Score=116.17 Aligned_cols=176 Identities=14% Similarity=0.073 Sum_probs=133.6
Q ss_pred ccCCceEEEeecCCCCCCchhhhcC-----CCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcc--
Q 039475 35 CQEKLRHLTLMLGLPTKFPVSIFDA-----KKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIE-- 107 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~~~~~~~l-----~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~-- 107 (286)
...+.+++.+..+.+...|..+..+ ++|++|++++|..... .+..|.+++.|++|++++ |.+..
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~Ls~----N~l~~~~ 189 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF-----SCEQVRVFPALSTLDLSD----NPELGER 189 (312)
T ss_dssp CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC-----CTTTCCCCSSCCEEECCS----CTTCHHH
T ss_pred cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccc-----hHHHhccCCCCCEEECCC----CCcCcch
Confidence 3567999999999987777777777 9999999999987543 667899999999999999 88543
Q ss_pred -cCccc--cCCCCCcEEecccccccCCCCCCCCCccc---ccc-cccccCCCEEEecCCCccccc--ccccccccccccc
Q 039475 108 -IPKGL--ENLIHLRYLKLSAVEELSETCYCPSLKRL---PQG-RGKLINLRHLIFDKDYLAYMA--NGFERLTSLRTLS 178 (286)
Q Consensus 108 -lP~~i--~~L~~Lr~L~L~~~~~LP~~~~~~~l~~L---P~~-i~~L~~L~~L~l~~~~~~~lP--~~i~~L~~L~~L~ 178 (286)
+|..+ +++.+|++|++++ +.+..+ |.. +.++++|++|++++|.+...+ ..+..+++|++|+
T Consensus 190 ~~~~~~~~~~l~~L~~L~L~~----------N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 259 (312)
T 1wwl_A 190 GLISALCPLKFPTLQVLALRN----------AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259 (312)
T ss_dssp HHHHHSCTTSCTTCCEEECTT----------SCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEE
T ss_pred HHHHHHHhccCCCCCEEECCC----------CcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEE
Confidence 46666 8999999999996 667744 433 367899999999999998755 3477789999999
Q ss_pred cccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475 179 GFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED 245 (286)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 245 (286)
+..+... .....+. ++|+ .|.+.+.. -. ..+. +..+++|+.|+++.|..++
T Consensus 260 Ls~N~l~--------~ip~~~~--~~L~-~L~Ls~N~---l~-~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 260 LSFTGLK--------QVPKGLP--AKLS-VLDLSYNR---LD-RNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTSCCS--------SCCSSCC--SEEE-EEECCSSC---CC-SCCC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCccC--------hhhhhcc--CCce-EEECCCCC---CC-CChh-HhhCCCCCEEeccCCCCCC
Confidence 8877543 1222232 5555 66666431 11 1233 8889999999999998763
No 101
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=4.7e-13 Score=130.57 Aligned_cols=110 Identities=23% Similarity=0.185 Sum_probs=61.0
Q ss_pred chhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCC
Q 039475 81 LQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDY 160 (286)
Q Consensus 81 ~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~ 160 (286)
.+..|..+..|++|+|++ +.+..+|..++++.+|++|+|++ +.+..+|..|++|++|++|++++|.
T Consensus 216 ~~~~~~~l~~L~~L~Ls~----n~l~~l~~~~~~l~~L~~L~Ls~----------N~l~~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSN----LQIFNISANIFKYDFLTRLYLNG----------NSLTELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp ------CCCCCCEEECTT----SCCSCCCGGGGGCCSCSCCBCTT----------SCCSCCCGGGGGGTTCCEEECTTSC
T ss_pred ChhhhccCCCCcEEECCC----CCCCCCChhhcCCCCCCEEEeeC----------CcCcccChhhhCCCCCCEEeCcCCc
Confidence 445556666666666666 66666666666666666666654 4555666666666666666666666
Q ss_pred cccccccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcc
Q 039475 161 LAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICG 213 (286)
Q Consensus 161 ~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~ 213 (286)
+..+|..|++|++|++|++..+... .....+++|++|+ .|.+.+
T Consensus 282 l~~lp~~~~~l~~L~~L~L~~N~l~--------~lp~~~~~l~~L~-~L~L~~ 325 (727)
T 4b8c_D 282 LTSLPAELGSCFQLKYFYFFDNMVT--------TLPWEFGNLCNLQ-FLGVEG 325 (727)
T ss_dssp CSSCCSSGGGGTTCSEEECCSSCCC--------CCCSSTTSCTTCC-CEECTT
T ss_pred CCccChhhcCCCCCCEEECCCCCCC--------ccChhhhcCCCcc-EEeCCC
Confidence 6666666666666666666555322 1222345555555 455543
No 102
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=2.7e-13 Score=105.86 Aligned_cols=109 Identities=23% Similarity=0.281 Sum_probs=89.5
Q ss_pred cCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCCC
Q 039475 58 DAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPS 137 (286)
Q Consensus 58 ~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~ 137 (286)
..++|+.|++.++...... +|..+..+++|++|++++ |.+..+ ..++++++|++|++++ +.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~----~~~~~~~l~~L~~L~l~~----n~l~~~-~~~~~l~~L~~L~Ls~----------n~ 75 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGK----LEGLTDEFEELEFLSTIN----VGLTSI-ANLPKLNKLKKLELSD----------NR 75 (149)
T ss_dssp CGGGCSEEECTTCBCBTTB----CCSCCTTCTTCCEEECTT----SCCCCC-TTCCCCTTCCEEECCS----------SC
T ss_pred CCccCeEEEccCCcCChhH----HHHHHhhcCCCcEEECcC----CCCCCc-hhhhcCCCCCEEECCC----------Cc
Confidence 3478899999998765111 677788999999999999 888887 7889999999999985 66
Q ss_pred Ccc-cccccccccCCCEEEecCCCccccc--cccccccccccccccccccc
Q 039475 138 LKR-LPQGRGKLINLRHLIFDKDYLAYMA--NGFERLTSLRTLSGFTVARV 185 (286)
Q Consensus 138 l~~-LP~~i~~L~~L~~L~l~~~~~~~lP--~~i~~L~~L~~L~~~~~~~~ 185 (286)
+.. +|..++++++|++|++++|.+..+| ..++.+++|++|++..+...
T Consensus 76 i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 76 VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp CCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred ccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 776 7888888999999999999988865 67899999999988777544
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=6.9e-13 Score=105.67 Aligned_cols=107 Identities=24% Similarity=0.302 Sum_probs=77.3
Q ss_pred cCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCCC
Q 039475 58 DAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPS 137 (286)
Q Consensus 58 ~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~ 137 (286)
..++|+.|++.++...... +|..+..+++|++|++++ |.+..+ ..++.+++|++|++++ +.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~----i~~~~~~l~~L~~L~l~~----n~l~~~-~~~~~l~~L~~L~Ls~----------N~ 82 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGK----IEGLTAEFVNLEFLSLIN----VGLISV-SNLPKLPKLKKLELSE----------NR 82 (168)
T ss_dssp CTTSCSEEECCSCBCBTTB----CSSCCGGGGGCCEEEEES----SCCCCC-SSCCCCSSCCEEEEES----------CC
T ss_pred CcccCCEEECCCCCCChhh----HHHHHHhCCCCCEEeCcC----CCCCCh-hhhccCCCCCEEECcC----------Cc
Confidence 3477888888887654111 666677788888888888 777776 6778888888888875 55
Q ss_pred Ccc-cccccccccCCCEEEecCCCccccc--cccccccccccccccccc
Q 039475 138 LKR-LPQGRGKLINLRHLIFDKDYLAYMA--NGFERLTSLRTLSGFTVA 183 (286)
Q Consensus 138 l~~-LP~~i~~L~~L~~L~l~~~~~~~lP--~~i~~L~~L~~L~~~~~~ 183 (286)
+.. +|..++++++|++|++++|.+..+| ..++.+++|++|++..+.
T Consensus 83 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 83 IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp CCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred CchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence 665 6666677888888888888877765 457777777777765543
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.39 E-value=1.1e-12 Score=117.66 Aligned_cols=125 Identities=15% Similarity=0.129 Sum_probs=53.4
Q ss_pred CceEEEeecCCCCCCchh-hh-cCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cccC
Q 039475 38 KLRHLTLMLGLPTKFPVS-IF-DAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLEN 114 (286)
Q Consensus 38 ~~r~ls~~~~~~~~~~~~-~~-~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~ 114 (286)
.++.|.+..+.+..++.. +. .+++|+.|++++|..... .+..|.+++.|++|+|++ |.+..+|. .++.
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-----~~~~~~~l~~L~~L~Ls~----N~l~~~~~~~~~~ 110 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-----SSEAFVPVPNLRYLDLSS----NHLHTLDEFLFSD 110 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE-----CTTTTTTCTTCCEEECCS----SCCCEECTTTTTT
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc-----ChhhccCCCCCCEEECCC----CcCCcCCHHHhCC
Confidence 344444444444333222 22 444445554444443221 223344444455555544 44444433 3444
Q ss_pred CCCCcEEecccccccCCCCCCCCCccc-ccccccccCCCEEEecCCCcccccccc----ccccccccccccc
Q 039475 115 LIHLRYLKLSAVEELSETCYCPSLKRL-PQGRGKLINLRHLIFDKDYLAYMANGF----ERLTSLRTLSGFT 181 (286)
Q Consensus 115 L~~Lr~L~L~~~~~LP~~~~~~~l~~L-P~~i~~L~~L~~L~l~~~~~~~lP~~i----~~L~~L~~L~~~~ 181 (286)
+.+|++|+|++ +.+..+ |..|.++++|++|++++|.+..+|.++ +.+++|++|++..
T Consensus 111 l~~L~~L~L~~----------N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 111 LQALEVLLLYN----------NHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp CTTCCEEECCS----------SCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred CcCCCEEECCC----------CcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence 44455555443 333333 233444444444444444444444432 3344444444443
No 105
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.37 E-value=2.3e-13 Score=122.88 Aligned_cols=83 Identities=12% Similarity=0.072 Sum_probs=45.1
Q ss_pred CCceEEEeecCCCCC-----CchhhhcCCCCcEEEeccCCCCCCCcCccchhh-------hcCCCCCcEEEeecccCCcc
Q 039475 37 EKLRHLTLMLGLPTK-----FPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGL-------FDQLTCLRALKIEELWYGDQ 104 (286)
Q Consensus 37 ~~~r~ls~~~~~~~~-----~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~-------~~~l~~Lr~L~L~~~~~~~~ 104 (286)
..+++|.+..+.+.. ++..+..+++|++|.++++...... ..+|.. |..+++|++|+|++ |.
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~--~~~~~~~~~l~~~l~~~~~L~~L~Ls~----n~ 105 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVK--DEIPEALRLLLQALLKCPKLHTVRLSD----NA 105 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCG--GGSHHHHHHHHHHHTTCTTCCEEECCS----CC
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccc--cchhHHHHHHHHHHhhCCcccEEECCC----Cc
Confidence 346666666655422 2223445667777777665322100 002322 35666777777776 66
Q ss_pred Ccc-----cCccccCCCCCcEEeccc
Q 039475 105 TIE-----IPKGLENLIHLRYLKLSA 125 (286)
Q Consensus 105 i~~-----lP~~i~~L~~Lr~L~L~~ 125 (286)
+.. +|..++++++|++|+|++
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~ 131 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHN 131 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCS
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcC
Confidence 553 566666666777777664
No 106
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.36 E-value=4.4e-12 Score=103.70 Aligned_cols=123 Identities=17% Similarity=0.188 Sum_probs=99.5
Q ss_pred eEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cccCCCCC
Q 039475 40 RHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLENLIHL 118 (286)
Q Consensus 40 r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~L~~L 118 (286)
+.+....+....+|..+ .++|++|++.+|.... +|..|.++++|++|+|++ |.+..++. .|+++.+|
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~------ip~~~~~l~~L~~L~Ls~----N~i~~i~~~~f~~l~~L 80 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTL------VPKELSNYKHLTLIDLSN----NRISTLSNQSFSNMTQL 80 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCS------CCGGGGGCTTCCEEECCS----SCCCCCCTTTTTTCTTC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCch------hHHHhhcccCCCEEECCC----CcCCEeCHhHccCCCCC
Confidence 45666666677777655 3689999999987653 677889999999999999 88887764 68999999
Q ss_pred cEEecccccccCCCCCCCCCccccc-ccccccCCCEEEecCCCccccccc-ccccccccccccccccc
Q 039475 119 RYLKLSAVEELSETCYCPSLKRLPQ-GRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVAR 184 (286)
Q Consensus 119 r~L~L~~~~~LP~~~~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~ 184 (286)
++|+|++ +.++.+|. .|+.+++|++|++++|.+..+|.+ |..+++|++|++..+..
T Consensus 81 ~~L~Ls~----------N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 81 LTLILSY----------NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CEEECCS----------SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEEECCC----------CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 9999986 67887765 588899999999999999988876 88899999988776654
No 107
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.34 E-value=4.1e-12 Score=103.70 Aligned_cols=126 Identities=22% Similarity=0.250 Sum_probs=99.2
Q ss_pred ceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccch-hhhcCCCCCcEEEeecccCCccCccc-CccccCCC
Q 039475 39 LRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQ-GLFDQLTCLRALKIEELWYGDQTIEI-PKGLENLI 116 (286)
Q Consensus 39 ~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i~~L~ 116 (286)
.+.+.+..+....+|..+. .+|++|++.++..... .+ ..|..++.|++|+|++ +.+..+ |..++++.
T Consensus 10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~-----~~~~~~~~l~~L~~L~Ls~----N~l~~~~~~~~~~l~ 78 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRI-----SSDGLFGRLPHLVKLELKR----NQLTGIEPNAFEGAS 78 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSB-----CCSCSGGGCTTCCEEECCS----SCCCCBCTTTTTTCT
T ss_pred CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCcc-----CCccccccCCCCCEEECCC----CCCCCcCHhHcCCcc
Confidence 3567777777777777653 3899999999876542 33 2478999999999999 888876 67889999
Q ss_pred CCcEEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCcccc-ccccccccccccccccccccc
Q 039475 117 HLRYLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYM-ANGFERLTSLRTLSGFTVARV 185 (286)
Q Consensus 117 ~Lr~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~ 185 (286)
+|++|+|++ +.++.+|.. +.++++|++|++++|.+..+ |..++.+++|++|++..+...
T Consensus 79 ~L~~L~Ls~----------N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 79 HIQELQLGE----------NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TCCEEECCS----------CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCEEECCC----------CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999999986 678877654 78899999999999988866 556889999999988776544
No 108
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.34 E-value=2.8e-12 Score=112.31 Aligned_cols=175 Identities=14% Similarity=0.052 Sum_probs=129.6
Q ss_pred cCCceEEEeecCCCCCC-c----hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcc---
Q 039475 36 QEKLRHLTLMLGLPTKF-P----VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIE--- 107 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~~-~----~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~--- 107 (286)
..+.+.+.+..+.+... + ..+..+++|++|++++|..... .+..|..++.|++|+|++ |.+..
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~----N~l~~~~~ 186 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAF-----SCEQVRAFPALTSLDLSD----NPGLGERG 186 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCC-----CTTSCCCCTTCCEEECCS----CTTCHHHH
T ss_pred CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchh-----hHHHhccCCCCCEEECCC----CCCccchh
Confidence 56788999998887532 2 3345799999999999987542 667889999999999999 88643
Q ss_pred cC--ccccCCCCCcEEecccccccCCCCCCCCCcccccc----cccccCCCEEEecCCCcccc-ccccccc---cccccc
Q 039475 108 IP--KGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQG----RGKLINLRHLIFDKDYLAYM-ANGFERL---TSLRTL 177 (286)
Q Consensus 108 lP--~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~----i~~L~~L~~L~l~~~~~~~l-P~~i~~L---~~L~~L 177 (286)
++ ..++.+++|++|++++ +.++.+|.. ++.+++|++|++++|.+..+ |..++.+ ++|++|
T Consensus 187 ~~~~~~~~~l~~L~~L~Ls~----------N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L 256 (310)
T 4glp_A 187 LMAALCPHKFPAIQNLALRN----------TGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSL 256 (310)
T ss_dssp HHTTSCTTSSCCCCSCBCCS----------SCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCE
T ss_pred hhHHHhhhcCCCCCEEECCC----------CCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEE
Confidence 43 3447999999999996 667776653 57889999999999999976 8778877 599999
Q ss_pred ccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475 178 SGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED 245 (286)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 245 (286)
++..+.... ....+. ++|+ .|.+.+..- . .+ ..+..+++|+.|+|+.|...+
T Consensus 257 ~Ls~N~l~~--------lp~~~~--~~L~-~L~Ls~N~l---~-~~-~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 257 NLSFAGLEQ--------VPKGLP--AKLR-VLDLSSNRL---N-RA-PQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ECCSSCCCS--------CCSCCC--SCCS-CEECCSCCC---C-SC-CCTTSCCCCSCEECSSTTTSC
T ss_pred ECCCCCCCc--------hhhhhc--CCCC-EEECCCCcC---C-CC-chhhhCCCccEEECcCCCCCC
Confidence 988776441 112222 4566 677764321 1 11 225778999999999998864
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.34 E-value=2.5e-12 Score=115.17 Aligned_cols=175 Identities=20% Similarity=0.144 Sum_probs=129.3
Q ss_pred ceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhc-CCCCCcEEEeecccCCccCcccCc-cccCCC
Q 039475 39 LRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFD-QLTCLRALKIEELWYGDQTIEIPK-GLENLI 116 (286)
Q Consensus 39 ~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~L~ 116 (286)
.+.+....+....+|..+ .+.++.|++++|..... .+..|. ++.+|++|+|++ |.+..+|. .++++.
T Consensus 20 ~~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l-----~~~~~~~~l~~L~~L~L~~----N~i~~i~~~~~~~l~ 88 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRL-----RAEWTPTRLTNLHSLLLSH----NHLNFISSEAFVPVP 88 (361)
T ss_dssp TTEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEE-----CTTSSSSCCTTCCEEECCS----SCCCEECTTTTTTCT
T ss_pred CCEEEeCCCCcCccCccC--CCCCCEEECCCCCCCcc-----ChhhhhhcccccCEEECCC----CcCCccChhhccCCC
Confidence 356777777777788765 35689999999986542 556676 899999999999 99998875 699999
Q ss_pred CCcEEecccccccCCCCCCCCCccccc-ccccccCCCEEEecCCCccccc-ccccccccccccccccccccCCccCCCCC
Q 039475 117 HLRYLKLSAVEELSETCYCPSLKRLPQ-GRGKLINLRHLIFDKDYLAYMA-NGFERLTSLRTLSGFTVARVGGKYSSEAC 194 (286)
Q Consensus 117 ~Lr~L~L~~~~~LP~~~~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~lP-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~ 194 (286)
+|++|+|++ +.++.+|. .|.++++|++|++++|.+..++ ..|+.+++|++|++..+... ..
T Consensus 89 ~L~~L~Ls~----------N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-------~l 151 (361)
T 2xot_A 89 NLRYLDLSS----------NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-------RF 151 (361)
T ss_dssp TCCEEECCS----------SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-------SC
T ss_pred CCCEEECCC----------CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-------ee
Confidence 999999996 77888876 5799999999999999999875 45999999999998877654 22
Q ss_pred Ccccc---cCcccccceeEEcccCCcccchhhhhhcCCCCC--CceEEEEeCCCCC
Q 039475 195 NLEGL---RNLNHLRQFLRICGLGNLQMRLKINAHLEKKKN--LVHLTLDFDKGED 245 (286)
Q Consensus 195 ~~~~l---~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~--L~~L~L~~~~~~~ 245 (286)
....+ ..+++|+ .|.+.+..- .. .-...+..+.. ++.|+|+.|....
T Consensus 152 ~~~~~~~~~~l~~L~-~L~L~~N~l-~~--l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 152 PVELIKDGNKLPKLM-LLDLSSNKL-KK--LPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CGGGTC----CTTCC-EEECCSSCC-CC--CCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CHHHhcCcccCCcCC-EEECCCCCC-Cc--cCHHHhhhccHhhcceEEecCCCccC
Confidence 22222 5677777 777764321 11 11233444544 4789999887653
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.33 E-value=2.1e-12 Score=115.69 Aligned_cols=217 Identities=16% Similarity=0.114 Sum_probs=114.9
Q ss_pred cCCceEEEeecCCCCCCc-----hhhhcCC-CCcEEEeccCCCCCCCcCccchhhhcCC-----CCCcEEEeecccCCcc
Q 039475 36 QEKLRHLTLMLGLPTKFP-----VSIFDAK-KLRSLSLFYDSKGQSAASPVLQGLFDQL-----TCLRALKIEELWYGDQ 104 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~~~-----~~~~~l~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~l-----~~Lr~L~L~~~~~~~~ 104 (286)
+.+++++.+..+.+...+ ..+..++ +|++|++++|..... .+..|..+ +.|++|+|++ |.
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-----~~~~l~~~l~~~~~~L~~L~Ls~----n~ 91 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK-----NSDELVQILAAIPANVTSLNLSG----NF 91 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS-----CHHHHHHHHHTSCTTCCEEECCS----SC
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHH-----HHHHHHHHHhccCCCccEEECcC----Cc
Confidence 455777777777664443 4556676 788888877765432 23333332 7777777777 77
Q ss_pred CcccCc-c----ccCC-CCCcEEeccc--ccccCC------------C-C----CCCCCc-----cccccccccc-CCCE
Q 039475 105 TIEIPK-G----LENL-IHLRYLKLSA--VEELSE------------T-C----YCPSLK-----RLPQGRGKLI-NLRH 153 (286)
Q Consensus 105 i~~lP~-~----i~~L-~~Lr~L~L~~--~~~LP~------------~-~----~~~~l~-----~LP~~i~~L~-~L~~ 153 (286)
+...+. . +..+ .+|++|++++ ++..+. . . ..+.+. .++..+..+. +|++
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence 664433 2 3444 6777777776 222221 1 0 012222 3344444454 6777
Q ss_pred EEecCCCcccccc-ccc----cc-ccccccccccccccCCccCCCCCCcc----cccC-cccccceeEEcccCCccc-ch
Q 039475 154 LIFDKDYLAYMAN-GFE----RL-TSLRTLSGFTVARVGGKYSSEACNLE----GLRN-LNHLRQFLRICGLGNLQM-RL 221 (286)
Q Consensus 154 L~l~~~~~~~lP~-~i~----~L-~~L~~L~~~~~~~~~~~~~~~~~~~~----~l~~-L~~L~~~L~i~~l~~~~~-~~ 221 (286)
|++++|.+...+. .+. .+ ++|++|++..+... ..... .+.. .++|+ .|.+.+..-... ..
T Consensus 172 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~-------~~~~~~l~~~l~~~~~~L~-~L~Ls~N~l~~~~~~ 243 (362)
T 3goz_A 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG-------LKSYAELAYIFSSIPNHVV-SLNLCLNCLHGPSLE 243 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG-------GSCHHHHHHHHHHSCTTCC-EEECCSSCCCCCCHH
T ss_pred eeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC-------hhHHHHHHHHHhcCCCCce-EEECcCCCCCcHHHH
Confidence 7776666654332 232 33 46666666655433 11111 2222 12455 566654322111 23
Q ss_pred hhhhhcCCCCCCceEEEEeCCCCCCccchhhccccccchhhHHHHHHHHHhcCCCCCcccCCC
Q 039475 222 KINAHLEKKKNLVHLTLDFDKGEDEEDEDYEEAPNLMNEENEAKQEAICEALQAPPNIVIRNN 284 (286)
Q Consensus 222 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~L~~l~~ 284 (286)
.+...+..+++|+.|++++|....- .......+.+.+...++|+.||.
T Consensus 244 ~l~~~~~~l~~L~~L~L~~n~l~~i---------------~~~~~~~l~~~~~~l~~L~~LdL 291 (362)
T 3goz_A 244 NLKLLKDSLKHLQTVYLDYDIVKNM---------------SKEQCKALGAAFPNIQKIILVDK 291 (362)
T ss_dssp HHHHTTTTTTTCSEEEEEHHHHTTC---------------CHHHHHHHHTTSTTCCEEEEECT
T ss_pred HHHHHHhcCCCccEEEeccCCcccc---------------CHHHHHHHHHHhccCCceEEEec
Confidence 4445556677777777777763310 11235566666777777777763
No 111
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.33 E-value=5.7e-13 Score=120.21 Aligned_cols=186 Identities=18% Similarity=0.146 Sum_probs=100.8
Q ss_pred CCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCc----ccCccc-------cCCCCC
Q 039475 50 TKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTI----EIPKGL-------ENLIHL 118 (286)
Q Consensus 50 ~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~----~lP~~i-------~~L~~L 118 (286)
..++..+..+++|++|+++++...... ...++..+..++.|++|+|++ +.+. .+|..+ ..+++|
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~-~~~l~~~l~~~~~L~~L~Ls~----~~~~~l~~~~~~~~~~l~~~l~~~~~L 96 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEA-ARWLSENIASKKDLEIAEFSD----IFTGRVKDEIPEALRLLLQALLKCPKL 96 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHH-HHHHHHTTTTCTTCCEEECCS----CCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHH-HHHHHHHHHhCCCccEEeCcc----cccCccccchhHHHHHHHHHHhhCCcc
Confidence 456778888999999999998754321 011344577899999999999 6544 345444 799999
Q ss_pred cEEeccc--ccc-----cCCC-CCCCCCcc---------------cccccccc---------cCCCEEEecCCCcc--cc
Q 039475 119 RYLKLSA--VEE-----LSET-CYCPSLKR---------------LPQGRGKL---------INLRHLIFDKDYLA--YM 164 (286)
Q Consensus 119 r~L~L~~--~~~-----LP~~-~~~~~l~~---------------LP~~i~~L---------~~L~~L~l~~~~~~--~l 164 (286)
++|+|++ +.. +|.. ..|..++. ++..+..+ ++|++|++++|.+. .+
T Consensus 97 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~ 176 (386)
T 2ca6_A 97 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176 (386)
T ss_dssp CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred cEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH
Confidence 9999997 222 3332 22222221 12222222 55555555555543 23
Q ss_pred c---ccccccccccccccccccccCCccCCCCCCcc-cccCcccccceeEEcccCCccc-chhhhhhcCCCCCCceEEEE
Q 039475 165 A---NGFERLTSLRTLSGFTVARVGGKYSSEACNLE-GLRNLNHLRQFLRICGLGNLQM-RLKINAHLEKKKNLVHLTLD 239 (286)
Q Consensus 165 P---~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~~~L~i~~l~~~~~-~~~~~~~l~~l~~L~~L~L~ 239 (286)
| ..++.+++|++|.+..+...... ....+. .+..+++|+ .|.+.+..-... ...++..+..+++|++|+|+
T Consensus 177 ~~l~~~l~~~~~L~~L~L~~n~l~~~g---~~~l~~~~l~~~~~L~-~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 177 KEWAKTFQSHRLLHTVKMVQNGIRPEG---IEHLLLEGLAYCQELK-VLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCCHHH---HHHHHHTTGGGCTTCC-EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred HHHHHHHHhCCCcCEEECcCCCCCHhH---HHHHHHHHhhcCCCcc-EEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence 3 23445555555555444321000 000111 344445555 555553321101 24445556666677777776
Q ss_pred eCCCC
Q 039475 240 FDKGE 244 (286)
Q Consensus 240 ~~~~~ 244 (286)
+|..+
T Consensus 253 ~n~i~ 257 (386)
T 2ca6_A 253 DCLLS 257 (386)
T ss_dssp TCCCC
T ss_pred CCCCc
Confidence 66655
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.33 E-value=4.8e-12 Score=120.03 Aligned_cols=103 Identities=20% Similarity=0.214 Sum_probs=79.8
Q ss_pred CCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCCCCcc
Q 039475 61 KLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPSLKR 140 (286)
Q Consensus 61 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~ 140 (286)
.|++|++++|.... +|. |+.++.|++|+|++ |.+..+|..|++|++|++|+|++ +.++.
T Consensus 442 ~L~~L~Ls~n~l~~------lp~-~~~l~~L~~L~Ls~----N~l~~lp~~~~~l~~L~~L~Ls~----------N~l~~ 500 (567)
T 1dce_A 442 DVRVLHLAHKDLTV------LCH-LEQLLLVTHLDLSH----NRLRALPPALAALRCLEVLQASD----------NALEN 500 (567)
T ss_dssp TCSEEECTTSCCSS------CCC-GGGGTTCCEEECCS----SCCCCCCGGGGGCTTCCEEECCS----------SCCCC
T ss_pred CceEEEecCCCCCC------CcC-ccccccCcEeecCc----ccccccchhhhcCCCCCEEECCC----------CCCCC
Confidence 57788888876543 555 77888888888888 88888888888888888888875 66777
Q ss_pred cccccccccCCCEEEecCCCcccc--ccccccccccccccccccccc
Q 039475 141 LPQGRGKLINLRHLIFDKDYLAYM--ANGFERLTSLRTLSGFTVARV 185 (286)
Q Consensus 141 LP~~i~~L~~L~~L~l~~~~~~~l--P~~i~~L~~L~~L~~~~~~~~ 185 (286)
+| .+++|++|++|++++|.+..+ |..++.|++|++|++..+...
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 77 788888888888888888776 677888888888877766544
No 113
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.32 E-value=2.7e-11 Score=115.94 Aligned_cols=72 Identities=18% Similarity=0.087 Sum_probs=46.7
Q ss_pred ccCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccC
Q 039475 35 CQEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLEN 114 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~ 114 (286)
++.+++.|.+..+.+..+|. .+++|++|++++|.... +|. .+++|++|++++ |.+..+|. .
T Consensus 59 l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~------lp~---~l~~L~~L~Ls~----N~l~~l~~---~ 119 (622)
T 3g06_A 59 LPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS------LPV---LPPGLLELSIFS----NPLTHLPA---L 119 (622)
T ss_dssp CCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC------CCC---CCTTCCEEEECS----CCCCCCCC---C
T ss_pred hCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc------CCC---CCCCCCEEECcC----CcCCCCCC---C
Confidence 34678888888887776666 46788888888876542 443 566777777777 66666655 3
Q ss_pred CCCCcEEeccc
Q 039475 115 LIHLRYLKLSA 125 (286)
Q Consensus 115 L~~Lr~L~L~~ 125 (286)
+.+|++|++++
T Consensus 120 l~~L~~L~L~~ 130 (622)
T 3g06_A 120 PSGLCKLWIFG 130 (622)
T ss_dssp CTTCCEEECCS
T ss_pred CCCcCEEECCC
Confidence 34444444443
No 114
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.31 E-value=2.1e-11 Score=112.68 Aligned_cols=148 Identities=21% Similarity=0.206 Sum_probs=101.9
Q ss_pred ccCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccC
Q 039475 35 CQEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLEN 114 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~ 114 (286)
.+.+++.+.+..+....+|.. .++|++|++++|.... ++.. .+.|++|++++ |.+..+| ++++
T Consensus 89 ~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~------l~~~---~~~L~~L~L~~----n~l~~lp-~~~~ 151 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKA------LSDL---PPLLEYLGVSN----NQLEKLP-ELQN 151 (454)
T ss_dssp CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC------CCSC---CTTCCEEECCS----SCCSSCC-CCTT
T ss_pred CcCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCc------ccCC---CCCCCEEECcC----CCCCCCc-ccCC
Confidence 467788999988887666643 4788999998886543 2321 26899999999 8888888 6999
Q ss_pred CCCCcEEeccc--ccccCCC-C-------CCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccc
Q 039475 115 LIHLRYLKLSA--VEELSET-C-------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVAR 184 (286)
Q Consensus 115 L~~Lr~L~L~~--~~~LP~~-~-------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~ 184 (286)
+.+|++|++++ ++.+|.. . ..+.++.+| +++++++|++|++++|.+..+|... .+|++|++..+..
T Consensus 152 l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l 227 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNIL 227 (454)
T ss_dssp CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCC
T ss_pred CCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcC
Confidence 99999999988 6666655 3 334566677 5788888888888877777666433 3566666655532
Q ss_pred cCCccCCCCCCcccccCcccccceeEEcc
Q 039475 185 VGGKYSSEACNLEGLRNLNHLRQFLRICG 213 (286)
Q Consensus 185 ~~~~~~~~~~~~~~l~~L~~L~~~L~i~~ 213 (286)
. .+..++.+++|+ .|.+.+
T Consensus 228 ~---------~lp~~~~l~~L~-~L~l~~ 246 (454)
T 1jl5_A 228 E---------ELPELQNLPFLT-TIYADN 246 (454)
T ss_dssp S---------SCCCCTTCTTCC-EEECCS
T ss_pred C---------cccccCCCCCCC-EEECCC
Confidence 2 222355555555 565553
No 115
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.31 E-value=1.4e-11 Score=98.92 Aligned_cols=125 Identities=30% Similarity=0.411 Sum_probs=99.1
Q ss_pred ceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-ccCCCC
Q 039475 39 LRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-LENLIH 117 (286)
Q Consensus 39 ~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i~~L~~ 117 (286)
.+.+....+....+|..+ .++|+.|++.++..... .+..|..++.|++|++++ +.+..+|.. ++.+.+
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~----n~l~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSL-----PHGVFDKLTQLTKLSLSQ----NQIQSLPDGVFDKLTK 77 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCC-----CTTTTTTCTTCSEEECCS----SCCCCCCTTTTTTCTT
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEe-----CHHHhcCcccccEEECCC----CcceEeChhHccCCCc
Confidence 355666666666667554 47899999999876532 556678899999999999 888888765 589999
Q ss_pred CcEEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCccccccc-ccccccccccccccccc
Q 039475 118 LRYLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVAR 184 (286)
Q Consensus 118 Lr~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~ 184 (286)
|++|++++ +.++.+|.. ++++++|++|++++|.+..+|.+ +..+++|++|++..+..
T Consensus 78 L~~L~l~~----------N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 78 LTILYLHE----------NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCEEECCS----------SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCEEECCC----------CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 99999986 678888765 58899999999999999988877 68889999988876643
No 116
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=3.7e-12 Score=102.36 Aligned_cols=108 Identities=20% Similarity=0.244 Sum_probs=87.9
Q ss_pred hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCC
Q 039475 55 SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCY 134 (286)
Q Consensus 55 ~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~ 134 (286)
.+.+..+|+.|++.++.... ++......+.|++|++++ |.+..+ ..++.+.+|++|++++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~------i~~~~~~~~~L~~L~Ls~----N~l~~~-~~l~~l~~L~~L~Ls~--------- 73 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV------IENLGATLDQFDAIDFSD----NEIRKL-DGFPLLRRLKTLLVNN--------- 73 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS------CCCGGGGTTCCSEEECCS----SCCCEE-CCCCCCSSCCEEECCS---------
T ss_pred hcCCcCCceEEEeeCCCCch------hHHhhhcCCCCCEEECCC----CCCCcc-cccccCCCCCEEECCC---------
Confidence 45668899999999987653 455444444999999999 988888 6889999999999986
Q ss_pred CCCCccccccc-ccccCCCEEEecCCCcccccc--ccccccccccccccccc
Q 039475 135 CPSLKRLPQGR-GKLINLRHLIFDKDYLAYMAN--GFERLTSLRTLSGFTVA 183 (286)
Q Consensus 135 ~~~l~~LP~~i-~~L~~L~~L~l~~~~~~~lP~--~i~~L~~L~~L~~~~~~ 183 (286)
+.+..+|..+ +.+++|++|++++|.+..+|. .++.+++|++|++..+.
T Consensus 74 -N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 74 -NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp -SCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred -CcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC
Confidence 7788888665 899999999999999988886 68888888888876654
No 117
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.30 E-value=3e-11 Score=115.70 Aligned_cols=113 Identities=19% Similarity=0.139 Sum_probs=87.6
Q ss_pred CceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCC
Q 039475 38 KLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIH 117 (286)
Q Consensus 38 ~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~ 117 (286)
..+.+.+..+....+|..+. ++|++|++.+|.... +|. .+++|++|+|++ |.+..+|. .+.+
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~------lp~---~l~~L~~L~Ls~----N~l~~lp~---~l~~ 102 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS------LPA---LPPELRTLEVSG----NQLTSLPV---LPPG 102 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSC------CCC---CCTTCCEEEECS----CCCSCCCC---CCTT
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCC------CCC---cCCCCCEEEcCC----CcCCcCCC---CCCC
Confidence 47899999988888887765 899999999997653 554 578999999999 99999997 7899
Q ss_pred CcEEeccc--ccccCCC-C-------CCCCCcccccccccccCCCEEEecCCCccccccccccc
Q 039475 118 LRYLKLSA--VEELSET-C-------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERL 171 (286)
Q Consensus 118 Lr~L~L~~--~~~LP~~-~-------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L 171 (286)
|++|++++ ++.+|.. . ..+.++.+|.. +++|++|++++|.+..+|..+.+|
T Consensus 103 L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L 163 (622)
T 3g06_A 103 LLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSEL 163 (622)
T ss_dssp CCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTC
T ss_pred CCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCccCCC
Confidence 99999998 7777654 3 33456667754 367788888877777666544333
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.29 E-value=7.3e-12 Score=118.79 Aligned_cols=156 Identities=17% Similarity=0.138 Sum_probs=112.9
Q ss_pred chhhhcCCCCcEEE-eccCCCCCCCcCccchh------hhcC--CCCCcEEEeecccCCccCcccCccccCCCCCcEEec
Q 039475 53 PVSIFDAKKLRSLS-LFYDSKGQSAASPVLQG------LFDQ--LTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKL 123 (286)
Q Consensus 53 ~~~~~~l~~Lr~L~-l~~~~~~~~~~~~~~~~------~~~~--l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L 123 (286)
|..+..+++|+.|+ +..+.... ++. .+.. ...|++|+|++ |.+..+|. |+++.+|++|+|
T Consensus 402 ~~~l~~l~~L~~L~~l~~n~~~~------L~~l~l~~n~i~~l~~~~L~~L~Ls~----n~l~~lp~-~~~l~~L~~L~L 470 (567)
T 1dce_A 402 KETLQYFSTLKAVDPMRAAYLDD------LRSKFLLENSVLKMEYADVRVLHLAH----KDLTVLCH-LEQLLLVTHLDL 470 (567)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHH------HHHHHHHHHHHHHHHHTTCSEEECTT----SCCSSCCC-GGGGTTCCEEEC
T ss_pred HHHHHHHHhcccCcchhhcccch------hhhhhhhcccccccCccCceEEEecC----CCCCCCcC-ccccccCcEeec
Confidence 45566778888887 44432110 111 0111 23589999999 99999997 999999999999
Q ss_pred ccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCC-cccccCc
Q 039475 124 SAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACN-LEGLRNL 202 (286)
Q Consensus 124 ~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~-~~~l~~L 202 (286)
++ +.++.+|..+++|++|++|++++|.+..+| .++.+++|++|++..+... +.. +..++.|
T Consensus 471 s~----------N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~-------~~~~p~~l~~l 532 (567)
T 1dce_A 471 SH----------NRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQ-------QSAAIQPLVSC 532 (567)
T ss_dssp CS----------SCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCC-------SSSTTGGGGGC
T ss_pred Cc----------ccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCC-------CCCCcHHHhcC
Confidence 96 778899999999999999999999999998 8999999999999887654 232 5677888
Q ss_pred ccccceeEEcccCCcccchhhhhhcCCCCCCceEEE
Q 039475 203 NHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTL 238 (286)
Q Consensus 203 ~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L 238 (286)
++|+ .|.+.+..-..........+..+++|+.|++
T Consensus 533 ~~L~-~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 533 PRLV-LLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTCC-EEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCC-EEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8888 7888754221112222233444778888763
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.27 E-value=3.6e-11 Score=113.91 Aligned_cols=169 Identities=16% Similarity=0.157 Sum_probs=103.5
Q ss_pred CceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCC
Q 039475 38 KLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIH 117 (286)
Q Consensus 38 ~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~ 117 (286)
+++.+.+..+.+..+|..+ .++|++|++++|.... +| ..+++|++|++++ |.+..+|. +++ +
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~------ip---~~l~~L~~L~Ls~----N~l~~ip~-l~~--~ 121 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALIS------LP---ELPASLEYLDACD----NRLSTLPE-LPA--S 121 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSC------CC---CCCTTCCEEECCS----SCCSCCCC-CCT--T
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcc------cc---cccCCCCEEEccC----CCCCCcch-hhc--C
Confidence 4566666666555555544 2566666666665432 44 3355666666666 66666665 544 6
Q ss_pred CcEEeccc--ccccCCC-C-------CCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCC
Q 039475 118 LRYLKLSA--VEELSET-C-------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGG 187 (286)
Q Consensus 118 Lr~L~L~~--~~~LP~~-~-------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~ 187 (286)
|++|++++ ++.+|.. . ..+.++.+|. .+++|++|++++|.+..+|. |+ ++|++|++..+....
T Consensus 122 L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~- 194 (571)
T 3cvr_A 122 LKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLES- 194 (571)
T ss_dssp CCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSS-
T ss_pred CCEEECCCCcCCCCCCcCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCc-
Confidence 66666665 4444432 1 2356777776 57788889998888888887 66 788888887765431
Q ss_pred ccCCCCCCccccc-Cc----ccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 188 KYSSEACNLEGLR-NL----NHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 188 ~~~~~~~~~~~l~-~L----~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
.+. +. +| ..|+ .|.+.+.. ...++..+..+++|+.|+|+.|...
T Consensus 195 ----lp~----~~~~L~~~~~~L~-~L~Ls~N~----l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 195 ----LPA----VPVRNHHSEETEI-FFRCRENR----ITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp ----CCC----CC--------CCE-EEECCSSC----CCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred ----hhh----HHHhhhcccccce-EEecCCCc----ceecCHHHhcCCCCCEEEeeCCcCC
Confidence 111 22 22 1115 56665321 2245666777999999999999887
No 120
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=2e-11 Score=98.10 Aligned_cols=113 Identities=22% Similarity=0.289 Sum_probs=88.6
Q ss_pred ceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-ccCCCC
Q 039475 39 LRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-LENLIH 117 (286)
Q Consensus 39 ~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i~~L~~ 117 (286)
.+.+....+....+|..+. ++|+.|++++|..... .|..|.++++|++|+|++ |.+..+|.. ++++.+
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~Ls~----N~l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKL-----EPGVFDHLVNLQQLYFNS----NKLTAIPTGVFDKLTQ 82 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCC-----CTTTTTTCTTCCEEECCS----SCCCCCCTTTTTTCTT
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCcccc-----CHHHhcCCcCCCEEECCC----CCCCccChhHhCCcch
Confidence 3567777777777777663 8889999988876542 577788899999999999 888888876 488899
Q ss_pred CcEEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCcccccccccccc
Q 039475 118 LRYLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYMANGFERLT 172 (286)
Q Consensus 118 Lr~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~L~ 172 (286)
|++|+|++ +.++.+|.. ++++++|++|++++|.+...|..+..+.
T Consensus 83 L~~L~L~~----------N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~ 128 (174)
T 2r9u_A 83 LTQLDLND----------NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLR 128 (174)
T ss_dssp CCEEECCS----------SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHH
T ss_pred hhEEECCC----------CccceeCHHHhccccCCCEEEeCCCCcccccccHHHHH
Confidence 99999985 778888875 7888899999999888877766555544
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.26 E-value=2.6e-11 Score=114.88 Aligned_cols=103 Identities=23% Similarity=0.231 Sum_probs=70.4
Q ss_pred CCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEeccc--ccccCCC-C---
Q 039475 60 KKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSA--VEELSET-C--- 133 (286)
Q Consensus 60 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~--~~~LP~~-~--- 133 (286)
.+|+.|++.++.... +|..+ +++|++|+|++ |.+..+| +.+.+|++|++++ ++.+|.- .
T Consensus 59 ~~L~~L~Ls~n~L~~------lp~~l--~~~L~~L~Ls~----N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~~L~ 123 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS------LPDNL--PPQITVLEITQ----NALISLP---ELPASLEYLDACDNRLSTLPELPASLK 123 (571)
T ss_dssp TTCSEEECCSSCCSC------CCSCC--CTTCSEEECCS----SCCSCCC---CCCTTCCEEECCSSCCSCCCCCCTTCC
T ss_pred CCccEEEeCCCCCCc------cCHhH--cCCCCEEECcC----CCCcccc---cccCCCCEEEccCCCCCCcchhhcCCC
Confidence 399999999997654 45433 47899999999 9999999 5689999999997 4444432 1
Q ss_pred ----CCCCCcccccccccccCCCEEEecCCCccccccccccccccccccccccc
Q 039475 134 ----YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVA 183 (286)
Q Consensus 134 ----~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~ 183 (286)
..+.+..+|. .+++|++|++++|.+..+|. .+++|++|++..+.
T Consensus 124 ~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 124 HLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ 171 (571)
T ss_dssp EEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC
T ss_pred EEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC
Confidence 2233445555 45566666666666666554 34566666655554
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.25 E-value=8.4e-14 Score=114.25 Aligned_cols=134 Identities=19% Similarity=0.222 Sum_probs=84.9
Q ss_pred chhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCC
Q 039475 81 LQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDY 160 (286)
Q Consensus 81 ~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~ 160 (286)
+|..|..++.|++|++++ +.+..+| .++++.+|++|++++ +.+..+|..++.+++|++|++++|.
T Consensus 40 l~~~~~~l~~L~~L~ls~----n~l~~l~-~~~~l~~L~~L~l~~----------n~l~~l~~~~~~~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 40 MDATLSTLKACKHLALST----NNIEKIS-SLSGMENLRILSLGR----------NLIKKIENLDAVADTLEELWISYNQ 104 (198)
T ss_dssp CHHHHHHTTTCSEEECSE----EEESCCC-CHHHHTTCCEEEEEE----------EEECSCSSHHHHHHHCSEEEEEEEE
T ss_pred hhHHHhcCCCCCEEECCC----CCCcccc-ccccCCCCCEEECCC----------CCcccccchhhcCCcCCEEECcCCc
Confidence 445677777777777777 7777777 777777777777774 5566777766777777777777777
Q ss_pred cccccccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCccc-------chhhhhhcCCCCCC
Q 039475 161 LAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQM-------RLKINAHLEKKKNL 233 (286)
Q Consensus 161 ~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~-------~~~~~~~l~~l~~L 233 (286)
+..+| +++.+++|++|++..+.... ...+..+..+++|+ .|.+.+..-... .......+..+++|
T Consensus 105 l~~l~-~~~~l~~L~~L~l~~N~i~~------~~~~~~l~~l~~L~-~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L 176 (198)
T 1ds9_A 105 IASLS-GIEKLVNLRVLYMSNNKITN------WGEIDKLAALDKLE-DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176 (198)
T ss_dssp CCCHH-HHHHHHHSSEEEESEEECCC------HHHHHHHTTTTTCS-EEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSC
T ss_pred CCcCC-ccccCCCCCEEECCCCcCCc------hhHHHHHhcCCCCC-EEEecCCccccccccccchHHHHHHHHHhCCCc
Confidence 77766 57777777777776654330 11123456666666 666664311000 01112236778888
Q ss_pred ceEE
Q 039475 234 VHLT 237 (286)
Q Consensus 234 ~~L~ 237 (286)
+.|+
T Consensus 177 ~~Ld 180 (198)
T 1ds9_A 177 KKLD 180 (198)
T ss_dssp SEEC
T ss_pred EEEC
Confidence 8876
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.25 E-value=5.1e-11 Score=97.34 Aligned_cols=109 Identities=23% Similarity=0.256 Sum_probs=96.8
Q ss_pred ccCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-ccc
Q 039475 35 CQEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLE 113 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~ 113 (286)
++.+++.|.+..+.+..+|..+..+++|+.|++++|..... .+..|.+++.|++|+|++ |.+..+|. .++
T Consensus 29 ~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-----~~~~f~~l~~L~~L~Ls~----N~l~~i~~~~f~ 99 (193)
T 2wfh_A 29 IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-----SNQSFSNMTQLLTLILSY----NRLRCIPPRTFD 99 (193)
T ss_dssp CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCS----SCCCBCCTTTTT
T ss_pred CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-----CHhHccCCCCCCEEECCC----CccCEeCHHHhC
Confidence 45689999999999988999999999999999999987642 667899999999999999 99998875 699
Q ss_pred CCCCCcEEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCcc
Q 039475 114 NLIHLRYLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLA 162 (286)
Q Consensus 114 ~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~ 162 (286)
.+.+|++|+|++ +.++.+|.. +..+++|++|++++|.+.
T Consensus 100 ~l~~L~~L~L~~----------N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 100 GLKSLRLLSLHG----------NDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TCTTCCEEECCS----------SCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEEECCC----------CCCCeeChhhhhcCccccEEEeCCCCee
Confidence 999999999996 778888874 789999999999998764
No 124
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.23 E-value=1.1e-10 Score=107.70 Aligned_cols=128 Identities=21% Similarity=0.199 Sum_probs=89.7
Q ss_pred CCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCC
Q 039475 37 EKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLI 116 (286)
Q Consensus 37 ~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~ 116 (286)
.+.+.+.+..+....+| .+..+++|++|++++|.... +|.. +..|++|++++ +.+..+| ++++++
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~------lp~~---~~~L~~L~L~~----n~l~~l~-~~~~l~ 195 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK------LPDL---PPSLEFIAAGN----NQLEELP-ELQNLP 195 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC------CCCC---CTTCCEEECCS----SCCSSCC-CCTTCT
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc------cCCC---cccccEEECcC----CcCCcCc-cccCCC
Confidence 56677777777666666 47777788888887776543 3332 34778888888 7777777 688899
Q ss_pred CCcEEeccc--ccccCCC-C-------CCCCCcccccccccccCCCEEEecCCCccccccccccccccccccccccc
Q 039475 117 HLRYLKLSA--VEELSET-C-------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVA 183 (286)
Q Consensus 117 ~Lr~L~L~~--~~~LP~~-~-------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~ 183 (286)
+|++|++++ +..+|.. . ..+.+..+| .++++++|++|++++|.+..+|..+ ++|++|++..+.
T Consensus 196 ~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~N~ 268 (454)
T 1jl5_A 196 FLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDLP---PSLEALNVRDNY 268 (454)
T ss_dssp TCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSCC---TTCCEEECCSSC
T ss_pred CCCEEECCCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCcccccc---cccCEEECCCCc
Confidence 999999988 6666554 3 334566788 4888888888888888888777533 556666655443
No 125
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.21 E-value=2.6e-11 Score=108.51 Aligned_cols=195 Identities=13% Similarity=0.056 Sum_probs=115.8
Q ss_pred CceEEEeecCCCCCC-chhhhcC-----CCCcEEEeccCCCCCCCcCccchhhhcCC-CCCcEEEeecccCCccCcccCc
Q 039475 38 KLRHLTLMLGLPTKF-PVSIFDA-----KKLRSLSLFYDSKGQSAASPVLQGLFDQL-TCLRALKIEELWYGDQTIEIPK 110 (286)
Q Consensus 38 ~~r~ls~~~~~~~~~-~~~~~~l-----~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l-~~Lr~L~L~~~~~~~~i~~lP~ 110 (286)
+++.+.+..+.+... +..+..+ ++|++|++++|....... ..+...+..+ +.|++|++++ |.+...+.
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~----N~l~~~~~ 126 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS-DELVKTLAAIPFTITVLDLGW----NDFSSKSS 126 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH-HHHHHHHHTSCTTCCEEECCS----SCGGGSCH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH-HHHHHHHHhCCCCccEEECcC----CcCCcHHH
Confidence 567777776665332 3344443 677777777776432200 0011223444 6677777777 66654443
Q ss_pred -c----ccCC-CCCcEEeccc--cc-----cc-------CCC-C----CCCCCcccc-c----ccccc-cCCCEEEecCC
Q 039475 111 -G----LENL-IHLRYLKLSA--VE-----EL-------SET-C----YCPSLKRLP-Q----GRGKL-INLRHLIFDKD 159 (286)
Q Consensus 111 -~----i~~L-~~Lr~L~L~~--~~-----~L-------P~~-~----~~~~l~~LP-~----~i~~L-~~L~~L~l~~~ 159 (286)
. +..+ .+|++|++++ ++ .+ |.. . ..+.+...+ . .+..+ ++|++|++++|
T Consensus 127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 206 (362)
T 3goz_A 127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN 206 (362)
T ss_dssp HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence 2 2332 4666676665 33 12 111 1 123344332 2 34445 69999999999
Q ss_pred Cccc-----cccccccc-ccccccccccccccCCccCCCCCCc----ccccCcccccceeEEcccC--Cccc--chhhhh
Q 039475 160 YLAY-----MANGFERL-TSLRTLSGFTVARVGGKYSSEACNL----EGLRNLNHLRQFLRICGLG--NLQM--RLKINA 225 (286)
Q Consensus 160 ~~~~-----lP~~i~~L-~~L~~L~~~~~~~~~~~~~~~~~~~----~~l~~L~~L~~~L~i~~l~--~~~~--~~~~~~ 225 (286)
.+.. ++..+..+ ++|++|++..+... .... ..+..+++|+ .|.+.+.. .+.. ...+..
T Consensus 207 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-------~~~~~~l~~~~~~l~~L~-~L~L~~n~l~~i~~~~~~~l~~ 278 (362)
T 3goz_A 207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH-------GPSLENLKLLKDSLKHLQ-TVYLDYDIVKNMSKEQCKALGA 278 (362)
T ss_dssp CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC-------CCCHHHHHHTTTTTTTCS-EEEEEHHHHTTCCHHHHHHHHT
T ss_pred CCChhHHHHHHHHHhcCCCCceEEECcCCCCC-------cHHHHHHHHHHhcCCCcc-EEEeccCCccccCHHHHHHHHH
Confidence 9887 67777774 59999999887654 2222 2245667777 78887543 2222 445566
Q ss_pred hcCCCCCCceEEEEeCCCCC
Q 039475 226 HLEKKKNLVHLTLDFDKGED 245 (286)
Q Consensus 226 ~l~~l~~L~~L~L~~~~~~~ 245 (286)
.+..+++|+.|+++.|...+
T Consensus 279 ~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 279 AFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp TSTTCCEEEEECTTSCBCCG
T ss_pred HhccCCceEEEecCCCcCCC
Confidence 78889999999999998874
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.21 E-value=6.7e-11 Score=96.43 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=94.8
Q ss_pred ccCCceEEEeecCCCCCCchh--hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-c
Q 039475 35 CQEKLRHLTLMLGLPTKFPVS--IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-G 111 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~~~~--~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~ 111 (286)
++..++.+.+..+.+..++.. +..+++|++|++++|..... .|..|.+++.|++|+|++ |.+..+|. .
T Consensus 27 ~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~Ls~----N~l~~~~~~~ 97 (192)
T 1w8a_A 27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-----EPNAFEGASHIQELQLGE----NKIKEISNKM 97 (192)
T ss_dssp CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-----CTTTTTTCTTCCEEECCS----CCCCEECSSS
T ss_pred CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-----CHhHcCCcccCCEEECCC----CcCCccCHHH
Confidence 455899999999988777653 88999999999999987643 688899999999999999 99998776 4
Q ss_pred ccCCCCCcEEecccccccCCCCCCCCCccc-ccccccccCCCEEEecCCCcc
Q 039475 112 LENLIHLRYLKLSAVEELSETCYCPSLKRL-PQGRGKLINLRHLIFDKDYLA 162 (286)
Q Consensus 112 i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~L-P~~i~~L~~L~~L~l~~~~~~ 162 (286)
++++++|++|+|++ +.+..+ |..+..+++|++|++++|.+.
T Consensus 98 ~~~l~~L~~L~L~~----------N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 98 FLGLHQLKTLNLYD----------NQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp STTCTTCCEEECCS----------SCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred hcCCCCCCEEECCC----------CcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 89999999999996 677766 678899999999999999876
No 127
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.21 E-value=2.2e-12 Score=118.62 Aligned_cols=36 Identities=19% Similarity=0.024 Sum_probs=18.0
Q ss_pred cccCCCEEEecCCCccc-----ccccccccccccccccccc
Q 039475 147 KLINLRHLIFDKDYLAY-----MANGFERLTSLRTLSGFTV 182 (286)
Q Consensus 147 ~L~~L~~L~l~~~~~~~-----lP~~i~~L~~L~~L~~~~~ 182 (286)
.+++|++|++++|.+.. +|..+.++++|++|++..+
T Consensus 254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 34555555555554443 3444455555555554433
No 128
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.19 E-value=2.3e-12 Score=118.56 Aligned_cols=88 Identities=15% Similarity=0.026 Sum_probs=49.8
Q ss_pred cCCCEEEecCCCccc-----ccccccccccccccccccccccCCccCCCCCCcccc----cC-cccccceeEEcccCCcc
Q 039475 149 INLRHLIFDKDYLAY-----MANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGL----RN-LNHLRQFLRICGLGNLQ 218 (286)
Q Consensus 149 ~~L~~L~l~~~~~~~-----lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l----~~-L~~L~~~L~i~~l~~~~ 218 (286)
++|++|++++|.+.. +|..+..+++|++|++..+... ...+..+ .. .++|+ .|.+.+..-..
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~-------~~~~~~l~~~l~~~~~~L~-~L~L~~n~i~~ 384 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE-------DAGVRELCQGLGQPGSVLR-VLWLADCDVSD 384 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH-------HHHHHHHHHHHTSTTCCCC-EEECTTSCCCH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc-------cccHHHHHHHHcCCCCceE-EEECCCCCCCh
Confidence 466666666665542 3445566677777776655432 1111211 11 34566 66666542211
Q ss_pred c-chhhhhhcCCCCCCceEEEEeCCCC
Q 039475 219 M-RLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 219 ~-~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
. ...++..+..+++|++|++++|..+
T Consensus 385 ~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 385 SSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred hhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 1 2356667777888888888888776
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.17 E-value=2.3e-12 Score=105.56 Aligned_cols=126 Identities=18% Similarity=0.144 Sum_probs=105.6
Q ss_pred CceEEEeecC--CCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475 38 KLRHLTLMLG--LPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL 115 (286)
Q Consensus 38 ~~r~ls~~~~--~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L 115 (286)
.++...+... ....+|..+..+++|++|++++|.... +| .+..+++|++|++++ |.+..+|..++.+
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~------l~-~~~~l~~L~~L~l~~----n~l~~l~~~~~~~ 92 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK------IS-SLSGMENLRILSLGR----NLIKKIENLDAVA 92 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC------CC-CHHHHTTCCEEEEEE----EEECSCSSHHHHH
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc------cc-ccccCCCCCEEECCC----CCcccccchhhcC
Confidence 4555555543 345567789999999999999987543 56 678999999999999 9999999989999
Q ss_pred CCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccc--ccccccccccccccccccc
Q 039475 116 IHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMAN--GFERLTSLRTLSGFTVARV 185 (286)
Q Consensus 116 ~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~--~i~~L~~L~~L~~~~~~~~ 185 (286)
++|++|++++ +.+..+| .++++++|++|++++|.+..+|. .++.+++|++|++..+...
T Consensus 93 ~~L~~L~L~~----------N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 93 DTLEELWISY----------NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHCSEEEEEE----------EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CcCCEEECcC----------CcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 9999999996 6788888 69999999999999999988765 6999999999998877543
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.15 E-value=1.4e-10 Score=92.78 Aligned_cols=107 Identities=23% Similarity=0.351 Sum_probs=78.4
Q ss_pred ceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-ccCCCC
Q 039475 39 LRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-LENLIH 117 (286)
Q Consensus 39 ~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i~~L~~ 117 (286)
.+.+.+..+....+|..+ .++|++|++++|..... .|..|.+++.|++|+|++ |.+..+|.. ++.+.+
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~-----~~~~~~~l~~L~~L~Ls~----N~l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKL-----EPGVFDRLTQLTRLDLDN----NQLTVLPAGVFDKLTQ 79 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCC-----CTTTTTTCTTCSEEECCS----SCCCCCCTTTTTTCTT
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCcc-----ChhhhcCcccCCEEECCC----CCcCccChhhccCCCC
Confidence 356667777666677655 37788888888876542 566778888888888888 888877765 478888
Q ss_pred CcEEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCcccccc
Q 039475 118 LRYLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYMAN 166 (286)
Q Consensus 118 Lr~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~lP~ 166 (286)
|++|+|++ +.++.+|.. +.++++|++|++++|.+.-.+.
T Consensus 80 L~~L~L~~----------N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 80 LTQLSLND----------NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCEEECCS----------SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCEEECCC----------CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 88888875 667777764 7788888888888887664443
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.13 E-value=2.6e-10 Score=91.38 Aligned_cols=113 Identities=24% Similarity=0.353 Sum_probs=95.1
Q ss_pred ccCCceEEEeecCCCCCCch-hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-c
Q 039475 35 CQEKLRHLTLMLGLPTKFPV-SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-L 112 (286)
Q Consensus 35 ~~~~~r~ls~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i 112 (286)
.+..++.+.+..+.+..++. .+..+++|++|++.+|..... .+..|..++.|++|++++ +.+..+|.. +
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~----N~l~~~~~~~~ 96 (177)
T 2o6r_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-----PDGVFDKLTKLTILYLHE----NKLQSLPNGVF 96 (177)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-----CTTTTTTCTTCCEEECCS----SCCCCCCTTTT
T ss_pred CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-----ChhHccCCCccCEEECCC----CCccccCHHHh
Confidence 45689999999988876665 468899999999999986532 556689999999999999 999988875 6
Q ss_pred cCCCCCcEEecccccccCCCCCCCCCccccccc-ccccCCCEEEecCCCcccccc
Q 039475 113 ENLIHLRYLKLSAVEELSETCYCPSLKRLPQGR-GKLINLRHLIFDKDYLAYMAN 166 (286)
Q Consensus 113 ~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i-~~L~~L~~L~l~~~~~~~lP~ 166 (286)
+++.+|++|++++ +.++.+|..+ .++++|++|++++|.+...++
T Consensus 97 ~~l~~L~~L~l~~----------N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 97 DKLTQLKELALDT----------NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTCTTCCEEECCS----------SCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hCCcccCEEECcC----------CcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999999999996 7788888764 889999999999998875443
No 132
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.11 E-value=2.1e-10 Score=92.09 Aligned_cols=101 Identities=20% Similarity=0.281 Sum_probs=85.9
Q ss_pred cEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-CccccCCCCCcEEecccccccCCCCCCCCCccc
Q 039475 63 RSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKGLENLIHLRYLKLSAVEELSETCYCPSLKRL 141 (286)
Q Consensus 63 r~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~L 141 (286)
+.+++.++.... +|..+ ...|++|+|++ +.+..+ |..++++++|++|+|++ +.++.+
T Consensus 15 ~~l~~~~n~l~~------iP~~~--~~~L~~L~Ls~----N~l~~~~~~~~~~l~~L~~L~Ls~----------N~l~~i 72 (174)
T 2r9u_A 15 TLVNCQNIRLAS------VPAGI--PTDKQRLWLNN----NQITKLEPGVFDHLVNLQQLYFNS----------NKLTAI 72 (174)
T ss_dssp SEEECCSSCCSS------CCSCC--CTTCSEEECCS----SCCCCCCTTTTTTCTTCCEEECCS----------SCCCCC
T ss_pred cEEEeCCCCCCc------cCCCc--CCCCcEEEeCC----CCccccCHHHhcCCcCCCEEECCC----------CCCCcc
Confidence 678888887643 55544 37899999999 999987 56889999999999996 789999
Q ss_pred ccc-cccccCCCEEEecCCCccccccc-cccccccccccccccccc
Q 039475 142 PQG-RGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARV 185 (286)
Q Consensus 142 P~~-i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~ 185 (286)
|.. ++++++|++|++++|.+..+|.+ |+.+++|++|++..+...
T Consensus 73 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 73 PTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 876 58999999999999999999987 999999999998877543
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.07 E-value=3.7e-10 Score=90.23 Aligned_cols=102 Identities=23% Similarity=0.275 Sum_probs=85.9
Q ss_pred CcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-CccccCCCCCcEEecccccccCCCCCCCCCcc
Q 039475 62 LRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKGLENLIHLRYLKLSAVEELSETCYCPSLKR 140 (286)
Q Consensus 62 Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~ 140 (286)
.++++++++.... +|..+ .+.|++|+|++ |.+..+ |..++++.+|++|+|++ +.++.
T Consensus 11 ~~~l~~s~n~l~~------ip~~~--~~~l~~L~L~~----N~i~~~~~~~~~~l~~L~~L~Ls~----------N~l~~ 68 (170)
T 3g39_A 11 GTTVDCSGKSLAS------VPTGI--PTTTQVLYLYD----NQITKLEPGVFDRLTQLTRLDLDN----------NQLTV 68 (170)
T ss_dssp TTEEECTTSCCSS------CCSCC--CTTCSEEECCS----SCCCCCCTTTTTTCTTCSEEECCS----------SCCCC
T ss_pred CCEEEeCCCCcCc------cCccC--CCCCcEEEcCC----CcCCccChhhhcCcccCCEEECCC----------CCcCc
Confidence 4688888887643 55443 47899999999 999988 56799999999999996 77888
Q ss_pred cccc-cccccCCCEEEecCCCccccccc-cccccccccccccccccc
Q 039475 141 LPQG-RGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARV 185 (286)
Q Consensus 141 LP~~-i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~ 185 (286)
+|.. +.++++|++|++++|.+..+|.+ |+.+++|++|++..+...
T Consensus 69 l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 8876 58999999999999999999876 999999999998877543
No 134
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.00 E-value=2.5e-10 Score=108.11 Aligned_cols=173 Identities=14% Similarity=0.089 Sum_probs=87.8
Q ss_pred hcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEeccc-c-----cccC
Q 039475 57 FDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSA-V-----EELS 130 (286)
Q Consensus 57 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~-~-----~~LP 130 (286)
..+++|++|++.++...... ...++..+.+++.|++|++++ +.+..+|..++++.+|++|+++. . ...+
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~-~~~l~~~~~~~~~L~~L~L~~----~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 263 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKIS-PKDLETIARNCRSLVSVKVGD----FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKY 263 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCC-HHHHHHHHHHCTTCCEEECSS----CBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred hcCCCccEEEeeccCCCccC-HHHHHHHHhhCCCCcEEeccC----ccHHHHHHHHhhhhHHHhhcccccccccchHHHH
Confidence 34555555555555432100 001444556667777777777 66666666667777777777753 1 1111
Q ss_pred CC-CCCCCC----------cccccccccccCCCEEEecCCCccc--ccccccccccccccccccccccCCccCCCCCCcc
Q 039475 131 ET-CYCPSL----------KRLPQGRGKLINLRHLIFDKDYLAY--MANGFERLTSLRTLSGFTVARVGGKYSSEACNLE 197 (286)
Q Consensus 131 ~~-~~~~~l----------~~LP~~i~~L~~L~~L~l~~~~~~~--lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~ 197 (286)
.. ..+.++ ..+|..+..+++|++|++++|.+.. ++.-++.+++|++|.+..... ...+.
T Consensus 264 ~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~--------~~~l~ 335 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG--------DRGLE 335 (592)
T ss_dssp SCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGH--------HHHHH
T ss_pred HHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccC--------HHHHH
Confidence 11 122222 2345556666777777777665442 222256666777766652211 11111
Q ss_pred c-ccCcccccceeEEcc----------cCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 198 G-LRNLNHLRQFLRICG----------LGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 198 ~-l~~L~~L~~~L~i~~----------l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
. ...+++|+ .|.+.+ ...+. ...+......+++|++|+++++..+
T Consensus 336 ~~~~~~~~L~-~L~L~~g~~~~~~~~~~~~~~-~~~~~~l~~~~~~L~~L~l~~~~l~ 391 (592)
T 3ogk_B 336 VLAQYCKQLK-RLRIERGADEQGMEDEEGLVS-QRGLIALAQGCQELEYMAVYVSDIT 391 (592)
T ss_dssp HHHHHCTTCC-EEEEECCCCSSTTSSTTCCCC-HHHHHHHHHHCTTCSEEEEEESCCC
T ss_pred HHHHhCCCCC-EEEeecCccccccccccCccC-HHHHHHHHhhCccCeEEEeecCCcc
Confidence 1 13344455 566663 21211 2223333445677888888777665
No 135
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.99 E-value=1.9e-10 Score=108.91 Aligned_cols=42 Identities=12% Similarity=0.035 Sum_probs=31.6
Q ss_pred ccccccccccCCCEEEecCCCccccccccccccccccccccc
Q 039475 140 RLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFT 181 (286)
Q Consensus 140 ~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~ 181 (286)
.++..+.++++|++|++.++.+..+|..++++++|++|.+..
T Consensus 211 ~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 211 DLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp HHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECB
T ss_pred HHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccc
Confidence 455556777888888888887777777788888888877653
No 136
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.95 E-value=4.7e-09 Score=93.33 Aligned_cols=138 Identities=12% Similarity=0.078 Sum_probs=75.9
Q ss_pred cCCceEEEeecCCC-CCCc-hhhhcCCCCcEE-EeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-c
Q 039475 36 QEKLRHLTLMLGLP-TKFP-VSIFDAKKLRSL-SLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-G 111 (286)
Q Consensus 36 ~~~~r~ls~~~~~~-~~~~-~~~~~l~~Lr~L-~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~ 111 (286)
..+.++|.+..+.+ ..++ ..|.++++++.+ .+.++.... +.|..|..++.|++|++++ +.+..+|. .
T Consensus 53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-----l~~~~f~~l~~L~~L~l~~----n~l~~~~~~~ 123 (350)
T 4ay9_X 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-----INPEAFQNLPNLQYLLISN----TGIKHLPDVH 123 (350)
T ss_dssp CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-----ECTTSBCCCTTCCEEEEEE----ECCSSCCCCT
T ss_pred CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-----cCchhhhhccccccccccc----cccccCCchh
Confidence 35689999998876 3343 356778887764 444555432 1567788999999999998 77766654 2
Q ss_pred ccCCCCCcEEeccc---ccccCCC-C------------CCCCCcccccccccccCCCEEEecC-CCccccccc-cccccc
Q 039475 112 LENLIHLRYLKLSA---VEELSET-C------------YCPSLKRLPQGRGKLINLRHLIFDK-DYLAYMANG-FERLTS 173 (286)
Q Consensus 112 i~~L~~Lr~L~L~~---~~~LP~~-~------------~~~~l~~LP~~i~~L~~L~~L~l~~-~~~~~lP~~-i~~L~~ 173 (286)
+....++.+|++.+ +..+|.. + ..+.++++|..+....+|+.|++.+ |.+..+|.+ |+.+++
T Consensus 124 ~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~ 203 (350)
T 4ay9_X 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG 203 (350)
T ss_dssp TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEEC
T ss_pred hcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcc
Confidence 33444455555433 3344432 2 2223444444444444444444432 344444433 344444
Q ss_pred ccccccccc
Q 039475 174 LRTLSGFTV 182 (286)
Q Consensus 174 L~~L~~~~~ 182 (286)
|++|++..+
T Consensus 204 L~~LdLs~N 212 (350)
T 4ay9_X 204 PVILDISRT 212 (350)
T ss_dssp CSEEECTTS
T ss_pred cchhhcCCC
Confidence 444444433
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.84 E-value=1.1e-08 Score=90.56 Aligned_cols=104 Identities=17% Similarity=0.080 Sum_probs=84.2
Q ss_pred EEEeecC-CCCCCchhhhcCCCCcEEEecc-CCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cccCCCC
Q 039475 41 HLTLMLG-LPTKFPVSIFDAKKLRSLSLFY-DSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLENLIH 117 (286)
Q Consensus 41 ~ls~~~~-~~~~~~~~~~~l~~Lr~L~l~~-~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~L~~ 117 (286)
.+....+ ....+|. +..+++|+.|++++ |..... .+..|.++.+|++|+|++ |.+..+|. .|++|.+
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~-----~~~~~~~l~~L~~L~l~~----N~l~~~~~~~~~~l~~ 81 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHL-----ELRDLRGLGELRNLTIVK----SGLRFVAPDAFHFTPR 81 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEE-----CGGGSCSCCCCSEEECCS----SCCCEECTTGGGSCSC
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCc-----ChhHhccccCCCEEECCC----CccceeCHHHhcCCcC
Confidence 3455555 5667888 99999999999996 776542 567899999999999999 99998765 6799999
Q ss_pred CcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccc
Q 039475 118 LRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYM 164 (286)
Q Consensus 118 Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~l 164 (286)
|++|+|++ +.+..+|..+.....|+.|++.+|.+...
T Consensus 82 L~~L~l~~----------N~l~~~~~~~~~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 82 LSRLNLSF----------NALESLSWKTVQGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp CCEEECCS----------SCCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred CCEEeCCC----------CccceeCHHHcccCCceEEEeeCCCccCC
Confidence 99999996 78889987765544599999999887643
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.77 E-value=2e-08 Score=88.93 Aligned_cols=99 Identities=19% Similarity=0.151 Sum_probs=80.9
Q ss_pred EEEeccC-CCCCCCcCccchhhhcCCCCCcEEEee-cccCCccCcccC-ccccCCCCCcEEecccccccCCCCCCCCCcc
Q 039475 64 SLSLFYD-SKGQSAASPVLQGLFDQLTCLRALKIE-ELWYGDQTIEIP-KGLENLIHLRYLKLSAVEELSETCYCPSLKR 140 (286)
Q Consensus 64 ~L~l~~~-~~~~~~~~~~~~~~~~~l~~Lr~L~L~-~~~~~~~i~~lP-~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~ 140 (286)
.+++.++ .... +|. +..+..|++|+|+ . |.+..+| ..|++|.+|++|+|++ +.++.
T Consensus 12 ~v~~~~~n~l~~------ip~-l~~~~~L~~L~l~~~----n~l~~~~~~~~~~l~~L~~L~l~~----------N~l~~ 70 (347)
T 2ifg_A 12 GLRCTRDGALDS------LHH-LPGAENLTELYIENQ----QHLQHLELRDLRGLGELRNLTIVK----------SGLRF 70 (347)
T ss_dssp CEECCSSCCCTT------TTT-SCSCSCCSEEECCSC----SSCCEECGGGSCSCCCCSEEECCS----------SCCCE
T ss_pred EEEcCCCCCCCc------cCC-CCCCCCeeEEEccCC----CCCCCcChhHhccccCCCEEECCC----------Cccce
Confidence 4566665 4432 777 8999999999998 6 7799888 5799999999999996 77888
Q ss_pred ccc-ccccccCCCEEEecCCCccccccc-ccccccccccccccccc
Q 039475 141 LPQ-GRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVAR 184 (286)
Q Consensus 141 LP~-~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~ 184 (286)
+|. .|++|++|++|+|++|.+..+|++ +..+. |+.|.+..+..
T Consensus 71 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 71 VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp ECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred eCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCc
Confidence 875 679999999999999999999987 44444 99998776654
No 139
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.72 E-value=1.6e-09 Score=102.62 Aligned_cols=41 Identities=12% Similarity=0.024 Sum_probs=24.8
Q ss_pred ccccccccCCCEEEecCCCccc--ccccccccccccccccccc
Q 039475 142 PQGRGKLINLRHLIFDKDYLAY--MANGFERLTSLRTLSGFTV 182 (286)
Q Consensus 142 P~~i~~L~~L~~L~l~~~~~~~--lP~~i~~L~~L~~L~~~~~ 182 (286)
|..+..+++|++|++++|.+.. ++.-++++++|++|.+..+
T Consensus 282 ~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 282 PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp GGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 3334466778888887776542 2222556777777776654
No 140
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.70 E-value=3.4e-09 Score=100.29 Aligned_cols=83 Identities=17% Similarity=0.106 Sum_probs=53.1
Q ss_pred cCCceEEEeecCCCCC-Cchhhh-cCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcc-----c
Q 039475 36 QEKLRHLTLMLGLPTK-FPVSIF-DAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIE-----I 108 (286)
Q Consensus 36 ~~~~r~ls~~~~~~~~-~~~~~~-~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~-----l 108 (286)
..+++++.+..+.... .+..+. .+++|++|.+.++....... ++..+.++++|++|++++ |.+.. +
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~---l~~~~~~~~~L~~L~L~~----~~i~~~~~~~l 176 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDG---LAAIAATCRNLKELDLRE----SDVDDVSGHWL 176 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHH---HHHHHHHCTTCCEEECTT----CEEECCCGGGG
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHH---HHHHHHhCCCCCEEeCcC----CccCCcchHHH
Confidence 3568888888776532 233343 58899999988774211111 455566788899999888 66442 3
Q ss_pred CccccCCCCCcEEeccc
Q 039475 109 PKGLENLIHLRYLKLSA 125 (286)
Q Consensus 109 P~~i~~L~~Lr~L~L~~ 125 (286)
+.....+++|++|++++
T Consensus 177 ~~~~~~~~~L~~L~l~~ 193 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISC 193 (594)
T ss_dssp GGSCTTCCCCCEEECTT
T ss_pred HHHhhcCCcCcEEEecc
Confidence 33334667888888874
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.54 E-value=9.3e-09 Score=92.43 Aligned_cols=168 Identities=17% Similarity=0.101 Sum_probs=95.5
Q ss_pred CCCCcEEEeccCCCCCCCcCccchhhhc-CCCCCcEEEeecccCCccCcc--cCccccCCCCCcEEecccccccCCCCCC
Q 039475 59 AKKLRSLSLFYDSKGQSAASPVLQGLFD-QLTCLRALKIEELWYGDQTIE--IPKGLENLIHLRYLKLSAVEELSETCYC 135 (286)
Q Consensus 59 l~~Lr~L~l~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~i~~--lP~~i~~L~~Lr~L~L~~~~~LP~~~~~ 135 (286)
+++|++|+++++....... ..+...+. ....|++|+|++ |.+.. +..-...+.+|++|+|++
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~-~~l~~~L~~~~~~L~~L~Ls~----n~l~~~~~~~l~~~L~~L~~L~Ls~---------- 135 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKC-TVVAAVLGSGRHALDEVNLAS----CQLDPAGLRTLLPVFLRARKLGLQL---------- 135 (372)
T ss_dssp HTTCCEEECTTSCCCHHHH-HHHHHHHSSCSSCEEEEECTT----CCCCHHHHHHTHHHHHTEEEEECCS----------
T ss_pred HhhCCEEEecCCCCCHHHH-HHHHHHHhhCCCCceEEEecC----CCCCHHHHHHHHHHHHhccHhhcCC----------
Confidence 4678888888877542110 00222222 236788888888 77642 222223456788888875
Q ss_pred CCCccc-----cccc-ccccCCCEEEecCCCccc-----ccccccccccccccccccccccCCccCCCCCCcccccCccc
Q 039475 136 PSLKRL-----PQGR-GKLINLRHLIFDKDYLAY-----MANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNH 204 (286)
Q Consensus 136 ~~l~~L-----P~~i-~~L~~L~~L~l~~~~~~~-----lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~ 204 (286)
+.+... ...+ ...++|++|++++|.+.. ++..+..+++|++|++..+...... .......+...++
T Consensus 136 n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g---~~~L~~~L~~~~~ 212 (372)
T 3un9_A 136 NSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEG---LELLAAQLDRNRQ 212 (372)
T ss_dssp SCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHH---HHHHHHHGGGCSC
T ss_pred CCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHH---HHHHHHHHhcCCC
Confidence 345322 2222 235678888888877653 3444567778888877766533100 0001223445556
Q ss_pred ccceeEEcccCCccc-chhhhhhcCCCCCCceEEEEeCCCCC
Q 039475 205 LRQFLRICGLGNLQM-RLKINAHLEKKKNLVHLTLDFDKGED 245 (286)
Q Consensus 205 L~~~L~i~~l~~~~~-~~~~~~~l~~l~~L~~L~L~~~~~~~ 245 (286)
|+ .|.+.++.-... ...+...+...++|++|+|++|..++
T Consensus 213 L~-~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 213 LQ-ELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp CC-EEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cC-eEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 66 677765422111 34555666677888999998888763
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.50 E-value=2.9e-07 Score=80.98 Aligned_cols=190 Identities=16% Similarity=0.071 Sum_probs=115.3
Q ss_pred CceEEEeecCCCCCCchhhhc-CCCCcEEEeccCCCCC--CC-------------cCccchhhhcC--------CCCCcE
Q 039475 38 KLRHLTLMLGLPTKFPVSIFD-AKKLRSLSLFYDSKGQ--SA-------------ASPVLQGLFDQ--------LTCLRA 93 (286)
Q Consensus 38 ~~r~ls~~~~~~~~~~~~~~~-l~~Lr~L~l~~~~~~~--~~-------------~~~~~~~~~~~--------l~~Lr~ 93 (286)
++.+|.+..+-...-...+.. +++|++|+++++.... .. ...+.+..|.+ +..|+.
T Consensus 26 ~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~ 105 (329)
T 3sb4_A 26 SITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEK 105 (329)
T ss_dssp HCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC
T ss_pred ceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcE
Confidence 456666654321111122333 6778888887776430 00 00113345667 888888
Q ss_pred EEeecccCCccCcccCc-cccCCCCCcEEeccc--ccccCCC-C-CCCCCccccccc-----------------------
Q 039475 94 LKIEELWYGDQTIEIPK-GLENLIHLRYLKLSA--VEELSET-C-YCPSLKRLPQGR----------------------- 145 (286)
Q Consensus 94 L~L~~~~~~~~i~~lP~-~i~~L~~Lr~L~L~~--~~~LP~~-~-~~~~l~~LP~~i----------------------- 145 (286)
|+|.. .+..+++ ++.++.+|+.+++.. +..++.. + +|..+..+|...
T Consensus 106 l~L~~-----~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~ 180 (329)
T 3sb4_A 106 VILSE-----KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET 180 (329)
T ss_dssp -CBCT-----TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred EECCc-----cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence 88865 2445554 577888888888877 6666666 4 554444444221
Q ss_pred ------------------------------------------ccccCCCEEEecCCCccccccc-ccccccccccccccc
Q 039475 146 ------------------------------------------GKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTV 182 (286)
Q Consensus 146 ------------------------------------------~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~ 182 (286)
..+++|+.+++.+|++..+|.+ |..+++|+++.+...
T Consensus 181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n 260 (329)
T 3sb4_A 181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN 260 (329)
T ss_dssp EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT
T ss_pred eEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc
Confidence 0267999999999999999987 999999999987553
Q ss_pred cccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 183 ARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 183 ~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
- . .-.-..+.++.+|++.+.+.+ .+. ......+..+++|+.++++.|...
T Consensus 261 i-~-------~I~~~aF~~~~~L~~~l~l~~--~l~--~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 261 L-K-------TIGQRVFSNCGRLAGTLELPA--SVT--AIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp C-C-------EECTTTTTTCTTCCEEEEECT--TCC--EECTTTTTTCTTEEEEEECSSCCC
T ss_pred c-c-------eehHHHhhCChhccEEEEEcc--cce--EEchhhhhCCccCCEEEeCCCccC
Confidence 1 1 112223455555542355542 221 222367889999999999888765
No 143
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.28 E-value=9.1e-07 Score=79.07 Aligned_cols=186 Identities=16% Similarity=0.118 Sum_probs=108.5
Q ss_pred CCceEEEeecCCCC--C-------CchhhhcCCCCcEEEeccCCCCCCCc----CccchhhhcCCCCCcEEEeecccCCc
Q 039475 37 EKLRHLTLMLGLPT--K-------FPVSIFDAKKLRSLSLFYDSKGQSAA----SPVLQGLFDQLTCLRALKIEELWYGD 103 (286)
Q Consensus 37 ~~~r~ls~~~~~~~--~-------~~~~~~~l~~Lr~L~l~~~~~~~~~~----~~~~~~~~~~l~~Lr~L~L~~~~~~~ 103 (286)
..++.+.+...... . +..+...+++||+|.+.+........ ...+...+..++.|+.|.|++ +
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g----~ 182 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKG----T 182 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEEC----C
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeC----C
Confidence 34677777654432 1 12335578899999986653211000 011667788899999999998 6
Q ss_pred cCcccCccccCCCCCcEEecccccccCCCCCCCCCcc-ccccc--ccccCCCEEEecC--CC------cccccccc--cc
Q 039475 104 QTIEIPKGLENLIHLRYLKLSAVEELSETCYCPSLKR-LPQGR--GKLINLRHLIFDK--DY------LAYMANGF--ER 170 (286)
Q Consensus 104 ~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~-LP~~i--~~L~~L~~L~l~~--~~------~~~lP~~i--~~ 170 (286)
.-..+|. +. +.+|+.|+|.. ..+.. -...+ .++++|++|++.. +. +..+...+ +.
T Consensus 183 ~~l~l~~-~~-~~~L~~L~L~~----------~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~ 250 (362)
T 2ra8_A 183 NNLSIGK-KP-RPNLKSLEIIS----------GGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250 (362)
T ss_dssp BTCBCCS-CB-CTTCSEEEEEC----------SBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTT
T ss_pred CCceecc-cc-CCCCcEEEEec----------CCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCC
Confidence 4234554 43 88999999973 22321 11223 3788999999852 11 11221222 34
Q ss_pred cccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCccc--chhhhhhcCCCCCCceEEEEeCCCC
Q 039475 171 LTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQM--RLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 171 L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~--~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
+++|++|.+..+..... ....+.+.+.+++|+ .|.+... .+.. ...+...+..+++|+.|+|+.|..+
T Consensus 251 ~p~Lr~L~L~~~~i~~~----~~~~la~a~~~~~L~-~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNV----VVEMFLESDILPQLE-TMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHH----HHHHHHHCSSGGGCS-EEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchH----HHHHHHhCccCCCCC-EEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 67899988876543210 011222334567777 7887542 2222 2344445566789999999988766
No 144
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.16 E-value=1.7e-06 Score=77.29 Aligned_cols=187 Identities=12% Similarity=0.113 Sum_probs=108.7
Q ss_pred CCCCcEEEeccCCCCCCC---cCccchhhhcCCCCCcEEEeecccCCccC----------cccCccccCCCCCcEEeccc
Q 039475 59 AKKLRSLSLFYDSKGQSA---ASPVLQGLFDQLTCLRALKIEELWYGDQT----------IEIPKGLENLIHLRYLKLSA 125 (286)
Q Consensus 59 l~~Lr~L~l~~~~~~~~~---~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i----------~~lP~~i~~L~~Lr~L~L~~ 125 (286)
..+++.|.+......... .-..+......+++|+.|.+.+ ... ..++..+..+++|+.|+|++
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~----~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g 181 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGD----IDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKG 181 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECC----CCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEEC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecC----cchhhcccccccccCHHHHHhcCCCCcEEEEeC
Confidence 456778887754432100 0000233355788999999976 321 13445567789999999985
Q ss_pred ccccCCCCCCCCCcccccccccccCCCEEEecCCCccc-cccccc--ccccccccccccccccCCccCCCCCCc---cc-
Q 039475 126 VEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAY-MANGFE--RLTSLRTLSGFTVARVGGKYSSEACNL---EG- 198 (286)
Q Consensus 126 ~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~-lP~~i~--~L~~L~~L~~~~~~~~~~~~~~~~~~~---~~- 198 (286)
+..+ .+|. + .+.+|++|++..+.+.. ....++ .+++|++|.++....... ....+ ..
T Consensus 182 ---------~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~----~~~~~~~l~~~ 245 (362)
T 2ra8_A 182 ---------TNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYG----FDGDMNVFRPL 245 (362)
T ss_dssp ---------CBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGT----CCSCGGGTGGG
T ss_pred ---------CCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccc----cchhHHHHHHH
Confidence 3223 4554 4 38899999998876542 222343 788999998753211100 01111 11
Q ss_pred c--cCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCCCccchhhccccccchhhHHHHHHHHHhcCCC
Q 039475 199 L--RNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGEDEEDEDYEEAPNLMNEENEAKQEAICEALQAP 276 (286)
Q Consensus 199 l--~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 276 (286)
+ ..+++|+ .|.+.++...............+++|+.|+|++|..++. ....+.+.|+++
T Consensus 246 l~~~~~p~Lr-~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~------------------G~~~L~~~L~~l 306 (362)
T 2ra8_A 246 FSKDRFPNLK-WLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE------------------GARLLLDHVDKI 306 (362)
T ss_dssp SCTTTCTTCC-EEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH------------------HHHHHHTTHHHH
T ss_pred HhcCCCCCcC-EEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH------------------HHHHHHhhcccC
Confidence 1 2456777 788875432211111112224688999999999887631 345667777767
Q ss_pred CCcccCCC
Q 039475 277 PNIVIRNN 284 (286)
Q Consensus 277 ~~L~~l~~ 284 (286)
++|+.|+.
T Consensus 307 ~~L~~L~L 314 (362)
T 2ra8_A 307 KHLKFINM 314 (362)
T ss_dssp TTCSEEEC
T ss_pred CcceEEEC
Confidence 78888763
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.13 E-value=4.1e-06 Score=73.53 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=17.7
Q ss_pred CCCCcEEEeecccCCccCcccCc-cccCCCCCcEEecc
Q 039475 88 LTCLRALKIEELWYGDQTIEIPK-GLENLIHLRYLKLS 124 (286)
Q Consensus 88 l~~Lr~L~L~~~~~~~~i~~lP~-~i~~L~~Lr~L~L~ 124 (286)
+..|+.|+|++ +.+..+|+ .|.++.+|+.+++.
T Consensus 225 ~~~L~~l~L~~----n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 225 MPNLVSLDISK----TNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp CTTCCEEECTT----BCCCEECTTTTTTCTTCCEEECC
T ss_pred cCCCeEEECCC----CCcceecHhhhhCCCCCCEEECC
Confidence 45555555555 55555554 34555555555554
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.13 E-value=2.7e-07 Score=82.81 Aligned_cols=161 Identities=18% Similarity=0.180 Sum_probs=103.1
Q ss_pred CCCCcEEEeecccCCccCcc-----cCcccc-CCCCCcEEecccccccCCCCCCCCCcc--cccccccccCCCEEEecCC
Q 039475 88 LTCLRALKIEELWYGDQTIE-----IPKGLE-NLIHLRYLKLSAVEELSETCYCPSLKR--LPQGRGKLINLRHLIFDKD 159 (286)
Q Consensus 88 l~~Lr~L~L~~~~~~~~i~~-----lP~~i~-~L~~Lr~L~L~~~~~LP~~~~~~~l~~--LP~~i~~L~~L~~L~l~~~ 159 (286)
++.|++|+|++ +.+.. +...+. ...+|++|+|++ +.+.. +..-...+.+|++|++++|
T Consensus 71 ~~~L~~L~Ls~----n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~----------n~l~~~~~~~l~~~L~~L~~L~Ls~n 136 (372)
T 3un9_A 71 LSSLRQLNLAG----VRMTPVKCTVVAAVLGSGRHALDEVNLAS----------CQLDPAGLRTLLPVFLRARKLGLQLN 136 (372)
T ss_dssp HTTCCEEECTT----SCCCHHHHHHHHHHHSSCSSCEEEEECTT----------CCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred HhhCCEEEecC----CCCCHHHHHHHHHHHhhCCCCceEEEecC----------CCCCHHHHHHHHHHHHhccHhhcCCC
Confidence 46799999999 88763 222333 337999999996 44542 2222345678999999999
Q ss_pred Ccccccc-cc-----cccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCccc-chhhhhhcCCCCC
Q 039475 160 YLAYMAN-GF-----ERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQM-RLKINAHLEKKKN 232 (286)
Q Consensus 160 ~~~~lP~-~i-----~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~-~~~~~~~l~~l~~ 232 (286)
.+..... .+ ...++|++|++..+...... .......+...++|+ .|.+.+..-... ...++..+...++
T Consensus 137 ~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~---~~~l~~~L~~~~~L~-~L~Ls~N~l~~~g~~~L~~~L~~~~~ 212 (372)
T 3un9_A 137 SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAG---VAVLMEGLAGNTSVT-HLSLLHTGLGDEGLELLAAQLDRNRQ 212 (372)
T ss_dssp CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHH---HHHHHHHHHTCSSCC-EEECTTSSCHHHHHHHHHHHGGGCSC
T ss_pred CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHH---HHHHHHHHhcCCCcC-EEeCCCCCCCcHHHHHHHHHHhcCCC
Confidence 8864322 23 24578999998877543100 001122335566677 788876532111 3455677888889
Q ss_pred CceEEEEeCCCCCCccchhhccccccchhhHHHHHHHHHhcCCCCCcccCCC
Q 039475 233 LVHLTLDFDKGEDEEDEDYEEAPNLMNEENEAKQEAICEALQAPPNIVIRNN 284 (286)
Q Consensus 233 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~L~~l~~ 284 (286)
|+.|+|++|..++. ....+.+.|..+++|++||.
T Consensus 213 L~~L~Ls~N~i~~~------------------g~~~l~~~L~~~~~L~~L~L 246 (372)
T 3un9_A 213 LQELNVAYNGAGDT------------------AALALARAAREHPSLELLHL 246 (372)
T ss_dssp CCEEECCSSCCCHH------------------HHHHHHHHHHHCSSCCEEEC
T ss_pred cCeEECCCCCCCHH------------------HHHHHHHHHHhCCCCCEEec
Confidence 99999999998731 33455666666677877763
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.12 E-value=3e-05 Score=70.16 Aligned_cols=161 Identities=9% Similarity=0.033 Sum_probs=81.4
Q ss_pred CCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEeccc-ccccCCC-C-CCC
Q 039475 60 KKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSA-VEELSET-C-YCP 136 (286)
Q Consensus 60 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~-~~~LP~~-~-~~~ 136 (286)
.+|+.+.+.++-.. +-...|.++..|+.+++.+ +.+..+|...-....|+.+.+.. ++.++.. + +|.
T Consensus 157 ~~L~~i~lp~~l~~------I~~~aF~~c~~L~~l~l~~----n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~ 226 (401)
T 4fdw_A 157 STVQEIVFPSTLEQ------LKEDIFYYCYNLKKADLSK----TKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTS 226 (401)
T ss_dssp CCCCEEECCTTCCE------ECSSTTTTCTTCCEEECTT----SCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCT
T ss_pred CCceEEEeCCCccE------ehHHHhhCcccCCeeecCC----CcceEechhhEeecccCEEEeCCchheehhhHhhCCC
Confidence 36777777653211 1445677788888888877 66665554332234555555544 4444444 3 333
Q ss_pred CCc-------------------------------ccc-cccccccCCCEEEecCCCcc-----ccccc-ccccccccccc
Q 039475 137 SLK-------------------------------RLP-QGRGKLINLRHLIFDKDYLA-----YMANG-FERLTSLRTLS 178 (286)
Q Consensus 137 ~l~-------------------------------~LP-~~i~~L~~L~~L~l~~~~~~-----~lP~~-i~~L~~L~~L~ 178 (286)
.++ .++ ..|.++++|+.+.+.++.+. .++.+ |..+++|+.+.
T Consensus 227 ~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~ 306 (401)
T 4fdw_A 227 QLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFE 306 (401)
T ss_dssp TCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEEC
T ss_pred CCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEE
Confidence 332 121 23445555666655554332 34433 55555565554
Q ss_pred cccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475 179 GFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
+... .. .-.-..+.++++|+ .+.+.. ++.. .....+..+ +|+.+.+..|...
T Consensus 307 l~~~-i~-------~I~~~aF~~c~~L~-~l~lp~--~l~~--I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 307 IPES-IR-------ILGQGLLGGNRKVT-QLTIPA--NVTQ--INFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CCTT-CC-------EECTTTTTTCCSCC-EEEECT--TCCE--ECTTSSSSS-CCCEEEECCSSCC
T ss_pred eCCc-eE-------EEhhhhhcCCCCcc-EEEECc--cccE--EcHHhCCCC-CCCEEEEcCCCCc
Confidence 4311 00 11112344455555 555532 1211 123457777 8999999887543
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.95 E-value=7.9e-05 Score=67.38 Aligned_cols=98 Identities=10% Similarity=0.119 Sum_probs=67.9
Q ss_pred hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccC-ccccCCCCCcEEeccc--ccccC
Q 039475 54 VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIP-KGLENLIHLRYLKLSA--VEELS 130 (286)
Q Consensus 54 ~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP-~~i~~L~~Lr~L~L~~--~~~LP 130 (286)
..|.+ .+|+.+.+..+-.. +-..+|.+. .|+.+.+.+ .+..++ ..+.++.+|+.+++.. +..+|
T Consensus 130 ~aF~~-~~L~~i~l~~~i~~------I~~~aF~~~-~L~~i~lp~-----~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~ 196 (401)
T 4fdw_A 130 DAFRN-SQIAKVVLNEGLKS------IGDMAFFNS-TVQEIVFPS-----TLEQLKEDIFYYCYNLKKADLSKTKITKLP 196 (401)
T ss_dssp TTTTT-CCCSEEECCTTCCE------ECTTTTTTC-CCCEEECCT-----TCCEECSSTTTTCTTCCEEECTTSCCSEEC
T ss_pred hhccc-CCccEEEeCCCccE------ECHHhcCCC-CceEEEeCC-----CccEehHHHhhCcccCCeeecCCCcceEec
Confidence 34555 47999998766321 144567774 699999866 355555 4789999999999986 89999
Q ss_pred CC-CCCCCCccc--cc--------ccccccCCCEEEecCCCccccc
Q 039475 131 ET-CYCPSLKRL--PQ--------GRGKLINLRHLIFDKDYLAYMA 165 (286)
Q Consensus 131 ~~-~~~~~l~~L--P~--------~i~~L~~L~~L~l~~~~~~~lP 165 (286)
.. +.|..++.+ |. .|.++.+|+.+++..+ +..++
T Consensus 197 ~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~ 241 (401)
T 4fdw_A 197 ASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VSTIG 241 (401)
T ss_dssp TTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT-CCEEC
T ss_pred hhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC-ccCcc
Confidence 98 767666532 32 4567788998888653 34443
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.73 E-value=2.6e-05 Score=66.57 Aligned_cols=82 Identities=22% Similarity=0.316 Sum_probs=60.5
Q ss_pred cCCCCCcEEEeecccCCccCcc---cCccccCCCCCcEEecccccccCCCCCCCCCccccccccccc--CCCEEEecCCC
Q 039475 86 DQLTCLRALKIEELWYGDQTIE---IPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLI--NLRHLIFDKDY 160 (286)
Q Consensus 86 ~~l~~Lr~L~L~~~~~~~~i~~---lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~--~L~~L~l~~~~ 160 (286)
.+++.|++|+|++ |.+.. +|..++.+++|++|+|++ +.+..+ ..+..+. +|++|++.+|.
T Consensus 167 ~~l~~L~~L~Ls~----N~l~~l~~l~~~~~~l~~L~~L~Ls~----------N~i~~~-~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSN----NRLYRLDDMSSIVQKAPNLKILNLSG----------NELKSE-RELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTT----SCCCCCGGGTTHHHHSTTCCEEECTT----------SCCCSG-GGGGGGTTSCCSEEECTTST
T ss_pred hhCCCCCEEECCC----CCCCCCccchhHHhhCCCCCEEECCC----------CccCCc-hhhhhcccCCcceEEccCCc
Confidence 5688999999999 88765 456777899999999986 667766 3455555 89999999988
Q ss_pred cc-cccc-------cccccccccccccccc
Q 039475 161 LA-YMAN-------GFERLTSLRTLSGFTV 182 (286)
Q Consensus 161 ~~-~lP~-------~i~~L~~L~~L~~~~~ 182 (286)
+. .+|. -+..+++|+.|+...+
T Consensus 232 l~~~~~~~~~y~~~il~~~P~L~~LDg~~v 261 (267)
T 3rw6_A 232 LCDTFRDQSTYISAIRERFPKLLRLDGHEL 261 (267)
T ss_dssp TGGGCSSHHHHHHHHHHHCTTCCEESSCBC
T ss_pred CccccCcchhHHHHHHHHCcccCeECCcCC
Confidence 76 3441 2667788888875443
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.69 E-value=1.6e-05 Score=63.96 Aligned_cols=116 Identities=14% Similarity=0.064 Sum_probs=75.2
Q ss_pred chhhhcCCCCcEEEeccC-CCCCCCcCccchhhhcCCCCCcEEEeecccCCccCc-----ccCccccCCCCCcEEecccc
Q 039475 53 PVSIFDAKKLRSLSLFYD-SKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTI-----EIPKGLENLIHLRYLKLSAV 126 (286)
Q Consensus 53 ~~~~~~l~~Lr~L~l~~~-~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~-----~lP~~i~~L~~Lr~L~L~~~ 126 (286)
...+...+.|++|++.++ ...... ...+...+...+.|++|+|++ |.+. .+...+.....|++|+|++
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g-~~~l~~~L~~~~~L~~L~Ls~----n~i~~~g~~~l~~~L~~n~~L~~L~L~~- 102 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPT-LKACAEALKTNTYVKKFSIVG----TRSNDPVAFALAEMLKVNNTLKSLNVES- 102 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHH-HHHHHHHHTTCCSCCEEECTT----SCCCHHHHHHHHHHHHHCSSCCEEECCS-
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHH-HHHHHHHHHhCCCcCEEECcC----CCCChHHHHHHHHHHHhCCCcCEEECcC-
Confidence 344566788888888887 543211 011445566778888888888 7765 2455666667888888875
Q ss_pred cccCCCCCCCCCc-----ccccccccccCCCEEEe--cCCCccc-----cccccccccccccccccccc
Q 039475 127 EELSETCYCPSLK-----RLPQGRGKLINLRHLIF--DKDYLAY-----MANGFERLTSLRTLSGFTVA 183 (286)
Q Consensus 127 ~~LP~~~~~~~l~-----~LP~~i~~L~~L~~L~l--~~~~~~~-----lP~~i~~L~~L~~L~~~~~~ 183 (286)
+.+. .+...+...++|++|++ .+|.+.. +...+...++|++|++..+.
T Consensus 103 ---------N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 103 ---------NFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp ---------SCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred ---------CcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4444 35666777778888888 6676653 33335555677777665443
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.51 E-value=0.0001 Score=62.81 Aligned_cols=82 Identities=18% Similarity=0.161 Sum_probs=63.2
Q ss_pred hcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCC--CCcEEecccccccCCCCC
Q 039475 57 FDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLI--HLRYLKLSAVEELSETCY 134 (286)
Q Consensus 57 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~--~Lr~L~L~~~~~LP~~~~ 134 (286)
.++++|++|++++|....... ++..+..+++|++|+|++ |.+..+ ..++.+. +|++|+|++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~---l~~~~~~l~~L~~L~Ls~----N~i~~~-~~l~~l~~l~L~~L~L~~--------- 229 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDD---MSSIVQKAPNLKILNLSG----NELKSE-RELDKIKGLKLEELWLDG--------- 229 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGG---GTTHHHHSTTCCEEECTT----SCCCSG-GGGGGGTTSCCSEEECTT---------
T ss_pred hhCCCCCEEECCCCCCCCCcc---chhHHhhCCCCCEEECCC----CccCCc-hhhhhcccCCcceEEccC---------
Confidence 468899999999999765322 667788999999999999 998876 4566666 999999986
Q ss_pred CCCCc-ccc-------cccccccCCCEEEe
Q 039475 135 CPSLK-RLP-------QGRGKLINLRHLIF 156 (286)
Q Consensus 135 ~~~l~-~LP-------~~i~~L~~L~~L~l 156 (286)
+.+. .+| ..+..+++|+.||-
T Consensus 230 -Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 230 -NSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp -STTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred -CcCccccCcchhHHHHHHHHCcccCeECC
Confidence 4343 233 23678889998864
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.38 E-value=7.6e-05 Score=59.92 Aligned_cols=112 Identities=12% Similarity=0.104 Sum_probs=83.6
Q ss_pred cCCceEEEeecC-CCC-----CCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcc--
Q 039475 36 QEKLRHLTLMLG-LPT-----KFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIE-- 107 (286)
Q Consensus 36 ~~~~r~ls~~~~-~~~-----~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~-- 107 (286)
...+++|.+..+ .+. .+...+...++|++|++++|...... ...+...+...+.|++|+|++ |.+..
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g-~~~l~~~L~~n~~L~~L~L~~----N~i~~~g 109 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPV-AFALAEMLKVNNTLKSLNVES----NFISGSG 109 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHH-HHHHHHHHHHCSSCCEEECCS----SCCCHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHH-HHHHHHHHHhCCCcCEEECcC----CcCCHHH
Confidence 356899999887 653 23455667899999999999864321 111455667778999999999 88763
Q ss_pred ---cCccccCCCCCcEEec--ccccccCCCCCCCCCc-----ccccccccccCCCEEEecCCCcc
Q 039475 108 ---IPKGLENLIHLRYLKL--SAVEELSETCYCPSLK-----RLPQGRGKLINLRHLIFDKDYLA 162 (286)
Q Consensus 108 ---lP~~i~~L~~Lr~L~L--~~~~~LP~~~~~~~l~-----~LP~~i~~L~~L~~L~l~~~~~~ 162 (286)
+...+.....|++|+| ++ +.+. .+...+...++|++|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~----------N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQS----------QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCS----------SCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCC----------CCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 6778888899999999 63 4444 35566777789999999998764
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.15 E-value=0.00027 Score=56.27 Aligned_cols=85 Identities=20% Similarity=0.166 Sum_probs=46.0
Q ss_pred CCCEEEecCCCcccc-cccccccccccccccccccccCCccCCCCCCcccccCc----ccccceeEEcccCCcccchhhh
Q 039475 150 NLRHLIFDKDYLAYM-ANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNL----NHLRQFLRICGLGNLQMRLKIN 224 (286)
Q Consensus 150 ~L~~L~l~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L----~~L~~~L~i~~l~~~~~~~~~~ 224 (286)
+|++|+++++.++.. -..+..+++|++|.+..|... ....+..+..+ ++|+ .|.+.++.++++ ...
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~I------tD~gL~~L~~~~~~~~~L~-~L~Ls~C~~ITD--~Gl 132 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYI------EDGCLERLSQLENLQKSML-EMEIISCGNVTD--KGI 132 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTC------CHHHHHHHHTCHHHHHHCC-EEEEESCTTCCH--HHH
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCcc------CHHHHHHHHhcccccCCCC-EEEcCCCCcCCH--HHH
Confidence 455555555544321 123455556666665555422 13344445443 2566 677776655544 223
Q ss_pred hhcCCCCCCceEEEEeCCC
Q 039475 225 AHLEKKKNLVHLTLDFDKG 243 (286)
Q Consensus 225 ~~l~~l~~L~~L~L~~~~~ 243 (286)
..+..+++|++|+|+....
T Consensus 133 ~~L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp HHGGGCTTCCEEEEESCTT
T ss_pred HHHhcCCCCCEEECCCCCC
Confidence 4466678888888886543
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.79 E-value=0.00068 Score=53.91 Aligned_cols=89 Identities=10% Similarity=0.017 Sum_probs=51.6
Q ss_pred chhhhcCCCCCcEEEeecccCCccCcc-cCccccCCCCCcEEecccccccCCCCCCCCCcccc-cccccc----cCCCEE
Q 039475 81 LQGLFDQLTCLRALKIEELWYGDQTIE-IPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLP-QGRGKL----INLRHL 154 (286)
Q Consensus 81 ~~~~~~~l~~Lr~L~L~~~~~~~~i~~-lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP-~~i~~L----~~L~~L 154 (286)
+|..+..-..|+.||+++ +.++. =-..+..+++|+.|+|++ |..++.-- ..+..+ ++|++|
T Consensus 53 LP~~~~~~~~L~~LDLs~----~~Itd~GL~~L~~~~~L~~L~L~~---------C~~ItD~gL~~L~~~~~~~~~L~~L 119 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATD----SCIMSIGFDHMEGLQYVEKIRLCK---------CHYIEDGCLERLSQLENLQKSMLEM 119 (176)
T ss_dssp SCCCSTTCCCEEEEEEES----CCCCGGGGGGGTTCSCCCEEEEES---------CTTCCHHHHHHHHTCHHHHHHCCEE
T ss_pred CCcccCCCceEeEEeCcC----CCccHHHHHHhcCCCCCCEEEeCC---------CCccCHHHHHHHHhcccccCCCCEE
Confidence 444332334688999998 77652 123567888888888885 76665321 123333 367888
Q ss_pred EecCCC-cccc-cccccccccccccccccc
Q 039475 155 IFDKDY-LAYM-ANGFERLTSLRTLSGFTV 182 (286)
Q Consensus 155 ~l~~~~-~~~l-P~~i~~L~~L~~L~~~~~ 182 (286)
+++++. ++.- -..+.++++|++|++..+
T Consensus 120 ~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 120 EIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp EEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred EcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 887753 4321 123455566666655554
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.90 E-value=0.038 Score=49.21 Aligned_cols=84 Identities=10% Similarity=0.039 Sum_probs=45.3
Q ss_pred Cccccc-ccccccCCCEEEecCCCccccccc-ccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccC
Q 039475 138 LKRLPQ-GRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLG 215 (286)
Q Consensus 138 l~~LP~-~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~ 215 (286)
++.++. .|.+..+|+.+++..+ +..++.+ |.++++|+.+.+-..- . .-.-..+.++.+|+ ++.+..
T Consensus 308 i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~l-~-------~I~~~aF~~C~~L~-~i~lp~-- 375 (394)
T 4fs7_A 308 VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLSL-R-------KIGANAFQGCINLK-KVELPK-- 375 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTTC-C-------EECTTTBTTCTTCC-EEEEEG--
T ss_pred cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECccc-c-------EehHHHhhCCCCCC-EEEECC--
Confidence 334432 3566777888877643 6666554 7888888877653210 0 11122345555565 666642
Q ss_pred CcccchhhhhhcCCCCCCceE
Q 039475 216 NLQMRLKINAHLEKKKNLVHL 236 (286)
Q Consensus 216 ~~~~~~~~~~~l~~l~~L~~L 236 (286)
. .......+.+.++|+.+
T Consensus 376 ~---~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 376 R---LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp G---GGGGGGGBCTTCEEEEE
T ss_pred C---CEEhhheecCCCCCcEE
Confidence 1 22223456666666654
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.69 E-value=0.057 Score=48.05 Aligned_cols=130 Identities=15% Similarity=0.141 Sum_probs=71.5
Q ss_pred CceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCC
Q 039475 38 KLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIH 117 (286)
Q Consensus 38 ~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~ 117 (286)
.+..+.+.......-...+.....++.+.+..+.... ....|..+..++...... ..+. ...+..+..
T Consensus 231 ~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i------~~~~F~~~~~l~~~~~~~----~~i~--~~~F~~~~~ 298 (394)
T 4fs7_A 231 GVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRI------GGSLFYNCSGLKKVIYGS----VIVP--EKTFYGCSS 298 (394)
T ss_dssp CCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEE------CSCTTTTCTTCCEEEECS----SEEC--TTTTTTCTT
T ss_pred CCceEEECCCceecccccccccccceeEEcCCCccee------eccccccccccceeccCc----eeec--ccccccccc
Confidence 3455555432221112345667778877776553221 233455555565555544 2211 113444555
Q ss_pred CcEEeccc-ccccCCC-C-CCCCCc---------ccc-cccccccCCCEEEecCCCccccccc-ccccccccccccc
Q 039475 118 LRYLKLSA-VEELSET-C-YCPSLK---------RLP-QGRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGF 180 (286)
Q Consensus 118 Lr~L~L~~-~~~LP~~-~-~~~~l~---------~LP-~~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~ 180 (286)
|+.+.+.. ++.+++. + +|.+|+ .++ ..|.++++|+.+.+..+ +..++.+ |..+++|+.+.+-
T Consensus 299 L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 299 LTEVKLLDSVKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CCEEEECTTCCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred ccccccccccceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 55555555 5555554 3 444443 333 24567788888888765 6777655 8888999888764
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.57 E-value=0.037 Score=49.31 Aligned_cols=69 Identities=20% Similarity=0.284 Sum_probs=41.0
Q ss_pred ccCCCCCcEEeccc-ccccCCC-C-CCCCCc---------ccc-cccccccCCCEEEecCCCccccccc-cccccccccc
Q 039475 112 LENLIHLRYLKLSA-VEELSET-C-YCPSLK---------RLP-QGRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTL 177 (286)
Q Consensus 112 i~~L~~Lr~L~L~~-~~~LP~~-~-~~~~l~---------~LP-~~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L 177 (286)
+.++..|+.+.+.. +..++.. + +|.+|+ .+. ..|.++.+|+.+.+..+ +..+..+ |.++++|+.+
T Consensus 284 F~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 284 FMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI 362 (394)
T ss_dssp TTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred cccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence 34444444444444 4444444 2 344433 333 24567788888888654 6677655 8888999888
Q ss_pred cccc
Q 039475 178 SGFT 181 (286)
Q Consensus 178 ~~~~ 181 (286)
.+..
T Consensus 363 ~~~~ 366 (394)
T 4gt6_A 363 EYSG 366 (394)
T ss_dssp EESS
T ss_pred EECC
Confidence 6543
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.86 E-value=0.049 Score=40.71 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=32.2
Q ss_pred EEEeecccCCccCc--ccCccccCCCCCcEEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCc
Q 039475 93 ALKIEELWYGDQTI--EIPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYL 161 (286)
Q Consensus 93 ~L~L~~~~~~~~i~--~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~ 161 (286)
+++.++ ..++ .+|..|. .+|++|+|++ +.++.||.. |..+.+|+.|+|.+|.+
T Consensus 12 ~v~Cs~----~~L~~~~vP~~lp--~~l~~L~Ls~----------N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGR----RGLTWASLPTAFP--VDTTELVLTG----------NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCS----SCCCTTTSCSCCC--TTCSEEECTT----------SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCC----CCCccccCCCCCC--cCCCEEECCC----------CcCCccChhhhhhccccCEEEecCCCe
Confidence 555555 5565 6665432 3466777765 666666644 46667777777777644
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.71 E-value=0.095 Score=46.57 Aligned_cols=116 Identities=15% Similarity=0.209 Sum_probs=71.8
Q ss_pred cccCCCCCcEEeccc-ccccCCC-C-CCCCCc---------cccc-ccccccCCCEEEecCCCccccccc-ccccccccc
Q 039475 111 GLENLIHLRYLKLSA-VEELSET-C-YCPSLK---------RLPQ-GRGKLINLRHLIFDKDYLAYMANG-FERLTSLRT 176 (286)
Q Consensus 111 ~i~~L~~Lr~L~L~~-~~~LP~~-~-~~~~l~---------~LP~-~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~ 176 (286)
.+.++..|+.+.+.. +..++.. + +|..++ .++. .|.+..+|+.+.+..+ ++.+... |..+++|+.
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER 338 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred eeeecccccEEecccccceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence 567888999999988 7777777 4 666554 3442 4567889999999764 6777655 999999998
Q ss_pred cccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCC
Q 039475 177 LSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDK 242 (286)
Q Consensus 177 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 242 (286)
+.+-.. .. .-.-..+.++++|+ ++.+.+. ......+.....|+.+.+.-+.
T Consensus 339 i~ip~s-v~-------~I~~~aF~~C~~L~-~i~~~~~------~~~~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 339 IAIPSS-VT-------KIPESAFSNCTALN-NIEYSGS------RSQWNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp EEECTT-CC-------BCCGGGGTTCTTCC-EEEESSC------HHHHHTCBCCCCC---------
T ss_pred EEECcc-cC-------EEhHhHhhCCCCCC-EEEECCc------eeehhhhhccCCCCEEEeCCCC
Confidence 876321 11 12233466777777 7777631 1122456677888888876553
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.14 E-value=0.25 Score=43.41 Aligned_cols=104 Identities=18% Similarity=0.236 Sum_probs=57.7
Q ss_pred hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cccCCCCCcEEecccccccCCC
Q 039475 54 VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLENLIHLRYLKLSAVEELSET 132 (286)
Q Consensus 54 ~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~L~~Lr~L~L~~~~~LP~~ 132 (286)
..+.....|+.+.+..+.... -...|.++..|+.+.+.. + +..+.. .+.++..|+.+.+..
T Consensus 211 ~~f~~~~~l~~i~~~~~~~~i------~~~~f~~~~~L~~i~lp~----~-v~~I~~~aF~~~~~l~~i~l~~------- 272 (379)
T 4h09_A 211 YGFSYGKNLKKITITSGVTTL------GDGAFYGMKALDEIAIPK----N-VTSIGSFLLQNCTALKTLNFYA------- 272 (379)
T ss_dssp TTTTTCSSCSEEECCTTCCEE------CTTTTTTCSSCCEEEECT----T-CCEECTTTTTTCTTCCEEEECC-------
T ss_pred cccccccccceeeeccceeEE------ccccccCCccceEEEcCC----C-ccEeCccccceeehhccccccc-------
Confidence 345556677777765543211 334566777777777755 3 444433 556677777777763
Q ss_pred CCCCCCccccc-ccccccCCCEEEecCCCccccccc-cccccccccccc
Q 039475 133 CYCPSLKRLPQ-GRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSG 179 (286)
Q Consensus 133 ~~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~ 179 (286)
.++.++. .+.++.+|+.+.+.++.+..++.. |.++++|+.+.+
T Consensus 273 ----~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 273 ----KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp ----CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred ----cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 3444442 234455555555555555555443 555555555543
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.11 E-value=0.059 Score=40.24 Aligned_cols=47 Identities=21% Similarity=0.296 Sum_probs=38.0
Q ss_pred CCCc--ccccccccccCCCEEEecCCCccccccc-ccccccccccccccccc
Q 039475 136 PSLK--RLPQGRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVAR 184 (286)
Q Consensus 136 ~~l~--~LP~~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~ 184 (286)
..++ .+|..+. .+|++|+|++|.+..+|.+ |..+.+|++|++..+..
T Consensus 18 ~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 18 RGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp SCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5566 8886643 3699999999999999987 88999999998876643
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.51 E-value=0.25 Score=43.38 Aligned_cols=120 Identities=16% Similarity=0.189 Sum_probs=77.7
Q ss_pred CceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cccCCC
Q 039475 38 KLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLENLI 116 (286)
Q Consensus 38 ~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~L~ 116 (286)
....+.+..+-...-...+.....|+.+.+..+-.. +-...|.++..|+.+.+.. . +..++. .+.++.
T Consensus 218 ~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v~~------I~~~aF~~~~~l~~i~l~~----~-i~~i~~~aF~~c~ 286 (379)
T 4h09_A 218 NLKKITITSGVTTLGDGAFYGMKALDEIAIPKNVTS------IGSFLLQNCTALKTLNFYA----K-VKTVPYLLCSGCS 286 (379)
T ss_dssp SCSEEECCTTCCEECTTTTTTCSSCCEEEECTTCCE------ECTTTTTTCTTCCEEEECC----C-CSEECTTTTTTCT
T ss_pred ccceeeeccceeEEccccccCCccceEEEcCCCccE------eCccccceeehhccccccc----c-ceecccccccccc
Confidence 345555543322212345677888999888665321 1345678888899888865 3 555554 668888
Q ss_pred CCcEEecccccccCCCCCCCCCccccc-ccccccCCCEEEecCCCccccccc-cccccccccccc
Q 039475 117 HLRYLKLSAVEELSETCYCPSLKRLPQ-GRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSG 179 (286)
Q Consensus 117 ~Lr~L~L~~~~~LP~~~~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~ 179 (286)
+|+.+.+.. +.++.++. .|.+..+|+.+.+..+ ++.+... |.++++|+.+.+
T Consensus 287 ~L~~i~l~~----------~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 287 NLTKVVMDN----------SAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TCCEEEECC----------TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred ccccccccc----------cccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 999998864 34666653 4566777777777643 6666654 788888887765
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=86.71 E-value=0.24 Score=39.81 Aligned_cols=119 Identities=12% Similarity=0.099 Sum_probs=66.2
Q ss_pred ccCCCCCcEEecccccccCCCCCCCCCc-----ccccccccccCCCEEEecCCCccc-----cccccccccccccccccc
Q 039475 112 LENLIHLRYLKLSAVEELSETCYCPSLK-----RLPQGRGKLINLRHLIFDKDYLAY-----MANGFERLTSLRTLSGFT 181 (286)
Q Consensus 112 i~~L~~Lr~L~L~~~~~LP~~~~~~~l~-----~LP~~i~~L~~L~~L~l~~~~~~~-----lP~~i~~L~~L~~L~~~~ 181 (286)
+.+-..|+.|+|++ ++.+. .|-..+..-+.|++|++.+|.+.. +...+..-+.|++|++..
T Consensus 37 l~~n~~L~~L~L~~---------nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 37 REDDTDLKEVNINN---------MKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp HTTCSSCCEEECTT---------CCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred HhcCCCccEEECCC---------CCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC
Confidence 34556788999874 22332 344556666789999998887752 223344556788887776
Q ss_pred ccccCCccCCCCC-CcccccCcccccceeEEcccCC--ccc--chhhhhhcCCCCCCceEEEEeCCCC
Q 039475 182 VARVGGKYSSEAC-NLEGLRNLNHLRQFLRICGLGN--LQM--RLKINAHLEKKKNLVHLTLDFDKGE 244 (286)
Q Consensus 182 ~~~~~~~~~~~~~-~~~~l~~L~~L~~~L~i~~l~~--~~~--~~~~~~~l~~l~~L~~L~L~~~~~~ 244 (286)
+..... ... ....+..=+.|+ .|.+.+..+ +.. ..++...+..-+.|+.|+++++..+
T Consensus 108 N~Ig~~----Ga~ala~aL~~N~tL~-~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 108 NFLTPE----LLARLLRSTLVTQSIV-EFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp SBCCHH----HHHHHHHHTTTTCCCS-EEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred CcCCHH----HHHHHHHHHhhCCcee-EEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 654310 000 111233334455 566653221 222 2345566666677777777766543
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=81.16 E-value=0.99 Score=36.16 Aligned_cols=119 Identities=11% Similarity=0.024 Sum_probs=70.5
Q ss_pred cccccCCCEEEecCC-Cccc-----ccccccccccccccccccccccCCccCCCCCCcc-cccCcccccceeEEcccCCc
Q 039475 145 RGKLINLRHLIFDKD-YLAY-----MANGFERLTSLRTLSGFTVARVGGKYSSEACNLE-GLRNLNHLRQFLRICGLGNL 217 (286)
Q Consensus 145 i~~L~~L~~L~l~~~-~~~~-----lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~~~L~i~~l~~~ 217 (286)
+.+-+.|++|+++++ .+.. +-..+..-+.|++|++..+...+. ....+. .|..=+.|+ .|.+....-.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~----ga~alA~aL~~N~tL~-~L~L~~N~Ig 111 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDS----EARGLIELIETSPSLR-VLNVESNFLT 111 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHH----HHTTHHHHHHHCSSCC-EEECCSSBCC
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChH----HHHHHHHHHhcCCccC-eEecCCCcCC
Confidence 345578999999874 5542 334466667899998877765420 112222 233334455 6666644322
Q ss_pred cc-chhhhhhcCCCCCCceEEEEeCCC-CCCccchhhccccccchhhHHHHHHHHHhcCCCCCcccCCC
Q 039475 218 QM-RLKINAHLEKKKNLVHLTLDFDKG-EDEEDEDYEEAPNLMNEENEAKQEAICEALQAPPNIVIRNN 284 (286)
Q Consensus 218 ~~-~~~~~~~l~~l~~L~~L~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~L~~l~~ 284 (286)
.. ..++...+..-+.|+.|+|+.+.. .-+ .+...++.+.|+..+.|+.|+.
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig----------------~~g~~~ia~aL~~N~tL~~L~l 164 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLG----------------NQVEMDMMMAIEENESLLRVGI 164 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCCCC----------------HHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCcCcCcC----------------HHHHHHHHHHHHhCCCcCeEec
Confidence 22 556677787777899999986543 211 1134456677777888877653
No 165
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=61.18 E-value=2.2 Score=39.58 Aligned_cols=18 Identities=17% Similarity=0.443 Sum_probs=16.6
Q ss_pred CchHHHHHHHHhcccceE
Q 039475 1 MHDIVHLFAQYLTRREFA 18 (286)
Q Consensus 1 mHDlv~dla~~~a~~e~~ 18 (286)
|||+|||+|+++++++++
T Consensus 456 mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 456 IDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CCHHHHHHHHTTSCTHHH
T ss_pred eChHHHHHHHHHHHHHHH
Confidence 899999999999998875
Done!