BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039477
(92 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein
At1g70830, A Member Of The Major Latex Protein Family
Length = 166
Score = 92.4 bits (228), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 66/91 (72%)
Query: 1 GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60
G ++AKE IEA++ + + ++VIEG+L++ YKSF T++VTPK GS+VHW EYE
Sbjct: 76 GEAKVAKERIEAVEPDKNLITFRVIEGDLMKEYKSFLLTIQVTPKPGGPGSIVHWHLEYE 135
Query: 61 KLNEDVPDPTGKLQILIDVAKDIDAHLLSQQ 91
K++E+V P LQ ++V+K+ID HLL+++
Sbjct: 136 KISEEVAHPETLLQFCVEVSKEIDEHLLAEE 166
>pdb|1VJH|A Chain A, Crystal Structure Of Gene Product Of At1g24000 From
Arabidopsis Thaliana
pdb|1VJH|B Chain B, Crystal Structure Of Gene Product Of At1g24000 From
Arabidopsis Thaliana
pdb|2Q3Q|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
At1g24000 From Arabidopsis Thaliana
pdb|2Q3Q|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
At1g24000 From Arabidopsis Thaliana
Length = 122
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 6 AKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNED 65
K IEA+D + + + +K+ ++ VTP DGS V W F +EK+++D
Sbjct: 36 GKTEIEAVDLVKKTXTIQXSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKD 95
Query: 66 VPDPTGKLQILIDVAKDIDAHLLS 89
+ DP + + K +D +L+
Sbjct: 96 IDDPHSIIDESVKYFKKLDEAILN 119
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 787
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
Query: 2 SPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSF-SSTVKVTPKENDDGS 51
S ++ K + AI+N+++ + + +ELY++F S+TVK DDGS
Sbjct: 341 SVKLTKSVATAIENKDFDKAISLRDTEFIELYENFLSTTVK------DDGS 385
>pdb|1BYW|A Chain A, Structure Of The N-Terminal Domain Of The Human-Erg
Potassium Channel
Length = 110
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 35 SFSSTVKVTPKENDDGSLVHWIFEYEKLNE 64
F V V P +N+DG+++ +I +E + E
Sbjct: 80 CFLCLVDVVPVKNEDGAVIMFILNFEVVME 109
>pdb|2L4R|A Chain A, Nmr Solution Structure Of The N-Terminal Pas Domain Of
Herg
Length = 135
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 35 SFSSTVKVTPKENDDGSLVHWIFEYEKLNE 64
F V V P +N+DG+++ +I +E + E
Sbjct: 105 CFLCLVDVVPVKNEDGAVIMFILNFEVVME 134
>pdb|2L0W|A Chain A, Solution Nmr Structure Of The N-Terminal Pas Domain Of
Herg Potassium Channel
Length = 138
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 35 SFSSTVKVTPKENDDGSLVHWIFEYEKLNE 64
F V V P +N+DG+++ +I +E + E
Sbjct: 108 CFLCLVDVVPVKNEDGAVIMFILNFEVVME 137
>pdb|2L1M|A Chain A, Solution Structure Of The Eag Domain Of The Herg (Kv11.1)
K+ Channel
Length = 150
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 35 SFSSTVKVTPKENDDGSLVHWIFEYEKLNE 64
F V V P +N+DG+++ +I +E + E
Sbjct: 105 CFLCLVDVVPVKNEDGAVIMFILNFEVVME 134
>pdb|1H2O|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Mutant E45w
Length = 159
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 7 KEIIEAIDNENYITNYKVIEGNLL 30
K I++ID ENY +Y +IEG+ L
Sbjct: 68 KHKIDSIDKENYSYSYTLIEGDAL 91
>pdb|1E09|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Length = 159
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 7 KEIIEAIDNENYITNYKVIEGNLL 30
K I++ID ENY +Y +IEG+ L
Sbjct: 68 KHKIDSIDKENYSYSYTLIEGDAL 91
>pdb|2XWU|B Chain B, Crystal Structure Of Importin 13 - Ubc9 Complex
Length = 963
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 55 WIFEYEKLNEDVPDPTGKLQIL 76
+I + EKL E++P+P+ KL I+
Sbjct: 617 YIQQLEKLAEEIPNPSNKLAIV 638
>pdb|2PPV|A Chain A, Crystal Structure Of A Protein Belonging To The Upf0052
(Se_0549) From Staphylococcus Epidermidis Atcc 12228 At
2.00 A Resolution
Length = 332
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 6 AKEIIEAIDNENYIT-NYKVIEGNLLELYKSFSSTVKVTPKE 46
A ++E I NE+Y+ N KV+ + EL +ST++ TP +
Sbjct: 289 ASNLVE-ISNEHYVRHNTKVLSKXIYELALELTSTIRFTPSD 329
>pdb|3OQU|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl9
With Aba
pdb|3OQU|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl9
With Aba
Length = 205
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 6 AKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPK--ENDDGSLV 53
+ E +E +D+E +I K+I G+ K++SS + V P+ E G++V
Sbjct: 112 STERLELLDDEEHILGIKIIGGD--HRLKNYSSILTVHPEIIEGRAGTMV 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,967,670
Number of Sequences: 62578
Number of extensions: 116619
Number of successful extensions: 283
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 28
length of query: 92
length of database: 14,973,337
effective HSP length: 59
effective length of query: 33
effective length of database: 11,281,235
effective search space: 372280755
effective search space used: 372280755
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)