Query 039477
Match_columns 92
No_of_seqs 117 out of 703
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 10:03:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039477.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039477hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 99.9 1.2E-26 2.6E-31 153.8 13.0 89 1-90 63-151 (151)
2 cd07816 Bet_v1-like Ligand-bin 99.9 1.8E-22 3.9E-27 132.8 13.8 88 2-90 60-148 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 98.7 6.7E-07 1.4E-11 56.0 10.3 80 4-87 57-139 (140)
4 cd08866 SRPBCC_11 Ligand-bindi 98.3 4.3E-05 9.3E-10 48.6 11.1 74 7-87 64-142 (144)
5 PF10604 Polyketide_cyc2: Poly 98.1 0.00034 7.4E-09 43.6 13.2 52 4-61 57-108 (139)
6 cd08861 OtcD1_ARO-CYC_like N-t 97.7 0.0018 3.8E-08 41.0 10.6 53 9-64 61-113 (142)
7 cd07822 SRPBCC_4 Ligand-bindin 97.2 0.019 4.1E-07 35.5 11.0 55 4-62 58-112 (141)
8 cd07813 COQ10p_like Coenzyme Q 97.1 0.0078 1.7E-07 38.0 8.7 49 8-63 61-109 (138)
9 cd07812 SRPBCC START/RHO_alpha 97.1 0.021 4.6E-07 34.1 9.8 56 5-65 59-114 (141)
10 cd08865 SRPBCC_10 Ligand-bindi 97.0 0.03 6.5E-07 34.5 10.2 49 5-61 60-108 (140)
11 cd07825 SRPBCC_7 Ligand-bindin 96.9 0.021 4.6E-07 36.0 9.4 79 5-87 62-143 (144)
12 cd07819 SRPBCC_2 Ligand-bindin 96.5 0.086 1.9E-06 32.7 10.9 42 17-63 73-114 (140)
13 cd07814 SRPBCC_CalC_Aha1-like 96.5 0.076 1.7E-06 32.9 9.4 56 4-63 57-112 (139)
14 PRK10724 hypothetical protein; 96.2 0.056 1.2E-06 35.9 8.1 50 7-63 76-125 (158)
15 cd07818 SRPBCC_1 Ligand-bindin 96.1 0.16 3.4E-06 32.2 9.7 51 7-63 67-118 (150)
16 cd07817 SRPBCC_8 Ligand-bindin 96.1 0.14 3.1E-06 31.7 9.3 52 5-63 56-107 (139)
17 cd05018 CoxG Carbon monoxide d 95.9 0.2 4.3E-06 31.1 12.0 52 8-63 63-114 (144)
18 cd07823 SRPBCC_5 Ligand-bindin 95.0 0.55 1.2E-05 29.9 10.2 52 10-63 63-115 (146)
19 cd08862 SRPBCC_Smu440-like Lig 94.1 0.82 1.8E-05 28.1 9.2 50 6-62 59-108 (138)
20 cd07820 SRPBCC_3 Ligand-bindin 93.3 0.6 1.3E-05 29.4 6.5 49 7-62 64-112 (137)
21 COG3427 Carbon monoxide dehydr 91.1 1.6 3.5E-05 29.0 6.7 80 7-89 61-145 (146)
22 cd08899 SRPBCC_CalC_Aha1-like_ 90.1 3.7 8E-05 26.6 8.3 75 6-91 65-139 (157)
23 PF06240 COXG: Carbon monoxide 89.9 3.6 7.7E-05 26.3 9.8 52 9-63 59-110 (140)
24 cd07826 SRPBCC_CalC_Aha1-like_ 89.0 4.2 9.2E-05 25.8 8.1 76 9-89 66-142 (142)
25 COG2867 Oligoketide cyclase/li 88.8 1.9 4.1E-05 28.7 5.6 46 13-63 68-113 (146)
26 cd08894 SRPBCC_CalC_Aha1-like_ 88.6 4.4 9.5E-05 25.5 7.4 72 9-88 66-138 (139)
27 cd07824 SRPBCC_6 Ligand-bindin 88.5 4.6 0.0001 25.6 10.2 41 15-63 73-113 (146)
28 cd08898 SRPBCC_CalC_Aha1-like_ 87.4 4.1 8.8E-05 25.3 6.4 78 8-88 59-144 (145)
29 cd08900 SRPBCC_CalC_Aha1-like_ 84.8 7.6 0.00016 24.5 11.4 74 9-88 67-142 (143)
30 cd08895 SRPBCC_CalC_Aha1-like_ 84.8 7.7 0.00017 24.5 9.9 75 7-88 71-145 (146)
31 cd08896 SRPBCC_CalC_Aha1-like_ 84.5 8.1 0.00017 24.5 7.6 76 7-89 64-146 (146)
32 cd08891 SRPBCC_CalC Ligand-bin 81.7 11 0.00024 23.9 7.8 77 9-88 65-148 (149)
33 cd08860 TcmN_ARO-CYC_like N-te 81.6 12 0.00025 24.2 10.9 47 13-65 69-116 (146)
34 cd08893 SRPBCC_CalC_Aha1-like_ 80.3 11 0.00023 23.0 7.8 75 8-87 58-134 (136)
35 PF03364 Polyketide_cyc: Polyk 80.2 11 0.00024 23.0 11.0 61 7-74 54-115 (130)
36 cd08897 SRPBCC_CalC_Aha1-like_ 75.1 17 0.00037 22.5 8.4 64 10-88 69-132 (133)
37 PTZ00220 Activator of HSP-90 A 72.7 21 0.00046 22.5 8.5 50 37-87 73-126 (132)
38 cd08873 START_STARD14_15-like 67.8 38 0.00082 24.1 6.8 57 33-90 177-235 (235)
39 PRK01844 hypothetical protein; 62.7 12 0.00027 21.9 3.0 13 80-92 26-38 (72)
40 PF01852 START: START domain; 60.6 46 0.00099 21.9 6.0 54 34-91 146-204 (206)
41 cd08877 START_2 Uncharacterize 58.3 56 0.0012 22.2 6.6 53 33-88 156-213 (215)
42 PRK00523 hypothetical protein; 56.6 18 0.0004 21.2 3.0 13 80-92 27-39 (72)
43 smart00234 START in StAR and p 56.6 55 0.0012 21.6 7.2 53 34-88 146-201 (206)
44 PF08327 AHSA1: Activator of H 55.5 42 0.00091 19.9 9.4 72 9-87 51-123 (124)
45 cd08868 START_STARD1_3_like Ch 54.8 64 0.0014 21.8 6.3 53 36-89 151-207 (208)
46 PF03672 UPF0154: Uncharacteri 53.4 23 0.0005 20.3 3.0 14 79-92 18-31 (64)
47 cd08905 START_STARD1-like Chol 52.9 71 0.0015 21.8 6.3 53 33-88 149-207 (209)
48 cd08871 START_STARD10-like Lip 51.0 77 0.0017 21.6 6.5 50 35-88 147-201 (222)
49 cd08901 SRPBCC_CalC_Aha1-like_ 50.8 55 0.0012 20.3 4.8 70 9-89 57-132 (136)
50 cd08910 START_STARD2-like Lipi 48.9 84 0.0018 21.4 6.6 52 32-87 148-204 (207)
51 PRK08706 lipid A biosynthesis 47.9 85 0.0018 22.3 5.9 38 54-92 232-269 (289)
52 COG3763 Uncharacterized protei 45.3 36 0.00078 19.9 3.0 12 81-92 27-38 (71)
53 PRK05645 lipid A biosynthesis 45.1 59 0.0013 23.2 4.7 38 54-92 238-275 (295)
54 cd08876 START_1 Uncharacterize 44.7 89 0.0019 20.5 11.1 50 33-86 139-193 (195)
55 TIGR02208 lipid_A_msbB lipid A 44.7 59 0.0013 23.4 4.7 38 54-92 248-285 (305)
56 cd08870 START_STARD2_7-like Li 42.4 1.1E+02 0.0023 20.8 6.9 53 32-88 148-207 (209)
57 PRK08733 lipid A biosynthesis 40.9 68 0.0015 23.1 4.6 38 54-92 248-285 (306)
58 PF14263 DUF4354: Domain of un 40.8 1E+02 0.0022 20.0 6.6 48 10-57 70-123 (124)
59 TIGR02207 lipid_A_htrB lipid A 40.4 72 0.0016 22.9 4.6 38 54-92 245-282 (303)
60 cd08867 START_STARD4_5_6-like 39.0 1.2E+02 0.0026 20.4 5.9 45 40-87 155-205 (206)
61 cd00177 START Lipid-binding ST 36.3 1.1E+02 0.0025 19.4 5.5 27 37-64 141-167 (193)
62 PRK06860 lipid A biosynthesis 35.2 1.1E+02 0.0024 22.1 4.9 38 54-92 251-288 (309)
63 KOG3294 WW domain binding prot 34.8 1.3E+02 0.0029 21.8 5.1 46 32-86 90-135 (261)
64 PRK08943 lipid A biosynthesis 34.0 1.1E+02 0.0025 22.0 4.8 38 54-92 257-294 (314)
65 COG5637 Predicted integral mem 33.2 1.3E+02 0.0028 21.1 4.6 47 13-64 133-179 (217)
66 PF03279 Lip_A_acyltrans: Bact 33.1 1.4E+02 0.003 21.1 5.1 39 53-92 246-284 (295)
67 PRK06553 lipid A biosynthesis 31.8 2E+02 0.0043 20.7 6.0 39 54-92 257-298 (308)
68 PRK08905 lipid A biosynthesis 31.4 1.1E+02 0.0024 21.9 4.3 37 54-92 227-263 (289)
69 cd08872 START_STARD11-like Cer 31.3 80 0.0017 22.2 3.5 40 50-90 185-227 (235)
70 cd08903 START_STARD5-like Lipi 30.8 1.7E+02 0.0038 19.8 6.0 46 39-88 156-206 (208)
71 PRK08734 lipid A biosynthesis 30.5 1.3E+02 0.0028 21.7 4.6 38 54-92 239-276 (305)
72 PF10698 DUF2505: Protein of u 30.0 1.6E+02 0.0034 19.1 8.0 49 9-62 80-128 (159)
73 PRK05646 lipid A biosynthesis 29.9 1.3E+02 0.0028 21.7 4.5 38 54-92 249-286 (310)
74 PF11192 DUF2977: Protein of u 28.4 78 0.0017 18.0 2.5 16 12-27 4-19 (62)
75 PF02087 Nitrophorin: Nitropho 28.3 2E+02 0.0044 19.7 6.2 27 4-30 48-74 (178)
76 cd07984 LPLAT_LABLAT-like Lyso 27.8 1.6E+02 0.0034 19.0 4.4 38 54-92 145-182 (192)
77 KOG1612 Exosomal 3'-5' exoribo 27.5 73 0.0016 23.4 2.8 26 31-57 29-54 (288)
78 cd08869 START_RhoGAP C-termina 27.4 2E+02 0.0043 19.4 6.8 30 34-64 141-170 (197)
79 PF03000 NPH3: NPH3 family; I 27.3 44 0.00095 24.1 1.7 15 78-92 221-235 (258)
80 cd05703 S1_Rrp5_repeat_hs12_sc 27.0 1E+02 0.0022 17.3 3.0 21 5-25 52-72 (73)
81 PRK07920 lipid A biosynthesis 26.9 1.8E+02 0.0038 20.8 4.8 37 55-92 236-272 (298)
82 PF08868 YugN: YugN-like famil 26.5 73 0.0016 20.8 2.5 28 61-88 105-132 (132)
83 PF00028 Cadherin: Cadherin do 26.1 1.3E+02 0.0029 17.0 4.7 26 4-29 12-40 (93)
84 cd08911 START_STARD7-like Lipi 25.5 2.2E+02 0.0048 19.3 6.4 54 32-88 145-205 (207)
85 PRK08419 lipid A biosynthesis 23.6 2E+02 0.0044 20.4 4.6 24 69-92 256-279 (298)
86 PF04780 DUF629: Protein of un 23.5 2.1E+02 0.0045 22.6 4.8 78 3-85 247-339 (466)
87 PF07474 G2F: G2F domain; Int 22.6 1.5E+02 0.0032 20.6 3.5 41 1-43 99-139 (192)
88 smart00243 GAS2 Growth-Arrest- 22.3 52 0.0011 19.3 1.1 15 78-92 54-68 (73)
89 PRK08025 lipid A biosynthesis 21.9 2.2E+02 0.0048 20.4 4.5 36 55-92 250-285 (305)
90 KOG4659 Uncharacterized conser 21.3 1.5E+02 0.0032 27.0 3.9 56 4-63 1038-1093(1899)
91 cd05696 S1_Rrp5_repeat_hs4 S1_ 21.1 1.2E+02 0.0027 16.7 2.5 18 6-23 53-70 (71)
92 PRK06946 lipid A biosynthesis 20.8 2.5E+02 0.0054 20.0 4.6 23 70-92 251-273 (293)
93 cd08885 RHO_alpha_C_1 C-termin 20.2 2.6E+02 0.0056 18.1 7.2 42 18-60 82-123 (190)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=99.95 E-value=1.2e-26 Score=153.82 Aligned_cols=89 Identities=46% Similarity=0.726 Sum_probs=84.7
Q ss_pred CCceeEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHHHHHHHH
Q 039477 1 GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVA 80 (92)
Q Consensus 1 g~~~~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~~~~~~~ 80 (92)
|++.++|||++++|+++|+++|+++||+++..+.+|.++++++|.++| +|+++|+++|++.++..++|+.+++++.+|+
T Consensus 63 ~~~~~~Kekve~~D~~~~~~~y~viEGd~l~~~~~~~~~~~~~~~~~g-~~v~k~t~~Ye~~~~~~~~p~~~~~~~~~~~ 141 (151)
T PF00407_consen 63 GPFKYVKEKVEAIDEENKTITYTVIEGDVLGDYKSFKSTIQKIPKGDG-GCVVKWTIEYEKKGEDVPPPEKYLDFAVGMF 141 (151)
T ss_dssp SSEEEEEEEEEEEETTTTEEEEEEEEETTGTTTEEEEEEEEEEEETTS-CEEEEEEEEEEESSTSCHHHHHHHHHHHHHH
T ss_pred CCcceeEEEEEeecCCCcEEEEEEEeccccccEEEEEEEEEecCCCCC-ceEEEEEEEEEecCCCCCCcHHHHHHHHHHH
Confidence 567899999999999999999999999999889999999999999888 8999999999999998888999999999999
Q ss_pred HHHHHHHhcC
Q 039477 81 KDIDAHLLSQ 90 (92)
Q Consensus 81 k~ie~~l~~~ 90 (92)
|+||+||++|
T Consensus 142 K~ieayLlan 151 (151)
T PF00407_consen 142 KAIEAYLLAN 151 (151)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhcC
Confidence 9999999997
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=99.90 E-value=1.8e-22 Score=132.76 Aligned_cols=88 Identities=33% Similarity=0.466 Sum_probs=81.4
Q ss_pred CceeEEEEEEEeeCCCCEEEEEEEecccc-cceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHHHHHHHH
Q 039477 2 SPQIAKEIIEAIDNENYITNYKVIEGNLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVA 80 (92)
Q Consensus 2 ~~~~~kErl~~~D~~~~~~~y~i~eg~~~-~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~~~~~~~ 80 (92)
+++++||||+++|+++|+++|++++|+++ .+|++|.++++|.|.+++ +|+++|+++|++.++.+++|+.+++.+..++
T Consensus 60 ~~~~~kE~l~~~D~~~~~~~y~vveg~~~~~~~~~y~~t~~v~~~~~~-~t~v~Wt~~ye~~~~~~~~p~~~~~~~~~~~ 138 (148)
T cd07816 60 KVKYVKERIDAVDEENKTYKYTVIEGDVLKDGYKSYKVEIKFVPKGDG-GCVVKWTIEYEKKGDAEPPEEEIKAGKEKAL 138 (148)
T ss_pred cceEEEEEEEEEcccccEEEEEEEecccccCceEEEEEEEEEEECCCC-CEEEEEEEEEEECCCCCCCHHHHHhHHHHHH
Confidence 45689999999999999999999999997 479999999999999666 8999999999999999899999999999999
Q ss_pred HHHHHHHhcC
Q 039477 81 KDIDAHLLSQ 90 (92)
Q Consensus 81 k~ie~~l~~~ 90 (92)
++++.|++.+
T Consensus 139 ~~~~~~~~~~ 148 (148)
T cd07816 139 KMFKAVEAYL 148 (148)
T ss_pred HHHHHHHhcC
Confidence 9999998753
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=98.67 E-value=6.7e-07 Score=56.02 Aligned_cols=80 Identities=24% Similarity=0.413 Sum_probs=60.5
Q ss_pred eeEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChh---hHHHHHHHHH
Q 039477 4 QIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPT---GKLQILIDVA 80 (92)
Q Consensus 4 ~~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~---~~~~~~~~~~ 80 (92)
..+++++..+|+.++.+.|++.+|+. ++.++..+++|.|.++| +|.|+|+..|++.+. .+.+. ...+.+...+
T Consensus 57 ~~~~~~i~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~-~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l 132 (140)
T cd07821 57 GTVRERLLALDDAERRYSYRIVEGPL--PVKNYVATIRVTPEGDG-GTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGL 132 (140)
T ss_pred CEEEEEehhcCccCCEEEEEecCCCC--CcccceEEEEEEECCCC-ccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHH
Confidence 35678999999887899999999866 78889999999998776 899999999999865 22221 1133344666
Q ss_pred HHHHHHH
Q 039477 81 KDIDAHL 87 (92)
Q Consensus 81 k~ie~~l 87 (92)
+.|.+++
T Consensus 133 ~~L~~~~ 139 (140)
T cd07821 133 AALKAAL 139 (140)
T ss_pred HHHHHhh
Confidence 7777665
No 4
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.26 E-value=4.3e-05 Score=48.61 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=52.1
Q ss_pred EEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHH-----HHHHHHH
Q 039477 7 KEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQ-----ILIDVAK 81 (92)
Q Consensus 7 kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~-----~~~~~~k 81 (92)
..++...++.++.++|++++|+ +..+.++.++.|.+++++|.++|.+.+++... . |..+.. ....+++
T Consensus 64 ~~~~~~~~~~~~~i~~~~~~g~----~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~-~--p~~l~~~~~~~~~~~~l~ 136 (144)
T cd08866 64 VLELREREEFPRELDFEMVEGD----FKRFEGSWRLEPLADGGGTLLTYEVEVKPDFF-A--PVFLVEFVLRQDLPTNLL 136 (144)
T ss_pred EEEEEEecCCCceEEEEEcCCc----hhceEEEEEEEECCCCCeEEEEEEEEEEeCCC-C--CHHHHHHHHHHHHHHHHH
Confidence 3445666666899999999884 56789999999988733899999999998753 2 223322 3335666
Q ss_pred HHHHHH
Q 039477 82 DIDAHL 87 (92)
Q Consensus 82 ~ie~~l 87 (92)
+|.+.+
T Consensus 137 ~lr~~a 142 (144)
T cd08866 137 AIRAEA 142 (144)
T ss_pred HHHHHH
Confidence 666543
No 5
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=98.14 E-value=0.00034 Score=43.58 Aligned_cols=52 Identities=19% Similarity=0.351 Sum_probs=45.4
Q ss_pred eeEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEE
Q 039477 4 QIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEK 61 (92)
Q Consensus 4 ~~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~ 61 (92)
..+++++..++++++.+.|++. .. ++..+..++++.|.++ ||.++|+.+|+.
T Consensus 57 ~~~~~~i~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~--gt~v~~~~~~~~ 108 (139)
T PF10604_consen 57 GTVREEITEYDPEPRRITWRFV--PS--GFTNGTGRWRFEPVGD--GTRVTWTVEFEP 108 (139)
T ss_dssp SEEEEEEEEEETTTTEEEEEEE--SS--SSCEEEEEEEEEEETT--TEEEEEEEEEEE
T ss_pred cceeEEEEEecCCCcEEEEEEE--ec--ceeEEEEEEEEEEcCC--CEEEEEEEEEEE
Confidence 4689999999988999999996 33 6778899999999875 599999999998
No 6
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=97.67 E-value=0.0018 Score=40.98 Aligned_cols=53 Identities=15% Similarity=0.109 Sum_probs=43.6
Q ss_pred EEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCC
Q 039477 9 IIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNE 64 (92)
Q Consensus 9 rl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~ 64 (92)
....+|++.+.+.|..++++. .+..+.++.+|.|.+++ +|.|+|+.+|+....
T Consensus 61 ~~~~~~~~~~~i~~~~~~~~~--~~~~~~g~w~~~~~~~~-~t~Vt~~~~~~~~~~ 113 (142)
T cd08861 61 SRRVLDPEGRRIVFRQEEPPP--PVASMSGEWRFEPLGGG-GTRVTLRHDFTLGID 113 (142)
T ss_pred EEEEEcCCCCEEEEEEeeCCC--ChhhheeEEEEEECCCC-cEEEEEEEEEEECCC
Confidence 344578878999999998655 57788999999998766 899999999998853
No 7
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.22 E-value=0.019 Score=35.53 Aligned_cols=55 Identities=7% Similarity=-0.037 Sum_probs=41.4
Q ss_pred eeEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEc
Q 039477 4 QIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKL 62 (92)
Q Consensus 4 ~~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~ 62 (92)
....+++.++|+ .+.+.|+...++. ..-....+++|.|.+++ +|.+.|...|...
T Consensus 58 ~~~~~~v~~~~p-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~T~~~~~~~~~g~ 112 (141)
T cd07822 58 RSFKPRVTEVEP-PRRLAWRGGLPFP--GLLDGEHSFELEPLGDG-GTRFVHRETFSGL 112 (141)
T ss_pred EEEEEEEEEEcC-CCEeEEEecCCCC--cEeeEEEEEEEEEcCCC-cEEEEEeeEEEEE
Confidence 456788888876 5789999887765 33346678889997555 8999999887643
No 8
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=97.13 E-value=0.0078 Score=38.05 Aligned_cols=49 Identities=12% Similarity=0.248 Sum_probs=39.9
Q ss_pred EEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477 8 EIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN 63 (92)
Q Consensus 8 Erl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~ 63 (92)
.++. ++. .+++++..++| +++.+.++.++.|.++| +|.|+|...|++.+
T Consensus 61 ~~~~-~~~-~~~i~~~~~~g----~~~~~~g~w~~~p~~~~-~T~v~~~~~~~~~~ 109 (138)
T cd07813 61 SRVT-LVP-PESIEAELVDG----PFKHLEGEWRFKPLGEN-ACKVEFDLEFEFKS 109 (138)
T ss_pred EEEE-ecC-CCEEEEEecCC----ChhhceeEEEEEECCCC-CEEEEEEEEEEECC
Confidence 3444 555 67889988888 46678899999998876 89999999999985
No 9
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.05 E-value=0.021 Score=34.13 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=44.5
Q ss_pred eEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCC
Q 039477 5 IAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNED 65 (92)
Q Consensus 5 ~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~ 65 (92)
..+.++..+++ +..++|++..++. . ..+..++++.+.+++ +|.++|+..+......
T Consensus 59 ~~~~~v~~~~~-~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~ 114 (141)
T cd07812 59 TLTSEVTEVDP-PRPGRFRVTGGGG--G-VDGTGEWRLEPEGDG-GTRVTYTVEYDPPGPL 114 (141)
T ss_pred cceEEEEEecC-CCceEEEEecCCC--C-cceeEEEEEEECCCC-cEEEEEEEEEecCCcc
Confidence 45778887776 7789999998876 3 578888999988764 7999999999987643
No 10
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.97 E-value=0.03 Score=34.49 Aligned_cols=49 Identities=16% Similarity=0.199 Sum_probs=38.7
Q ss_pred eEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEE
Q 039477 5 IAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEK 61 (92)
Q Consensus 5 ~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~ 61 (92)
.+++++..+| .++.+.|....|++ . +..++++.|.++ +|.++|+.+|..
T Consensus 60 ~~~~~v~~~~-p~~~~~~~~~~~~~--~---~~~~~~~~~~~~--~t~v~~~~~~~~ 108 (140)
T cd08865 60 ELTYEITEYE-PGRRVVFRGSSGPF--P---YEDTYTFEPVGG--GTRVRYTAELEP 108 (140)
T ss_pred EEEEEEEEec-CCcEEEEEecCCCc--c---eEEEEEEEEcCC--ceEEEEEEEEcc
Confidence 4578888877 56889999877644 2 678899988754 799999999986
No 11
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.94 E-value=0.021 Score=36.00 Aligned_cols=79 Identities=8% Similarity=0.003 Sum_probs=49.2
Q ss_pred eEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCC--CC-ChhhHHHHHHHHHH
Q 039477 5 IAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNED--VP-DPTGKLQILIDVAK 81 (92)
Q Consensus 5 ~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~--~~-~~~~~~~~~~~~~k 81 (92)
.+..++..+++ ++.++|+..-.+. +......++++.|.++| +|.++++..|...+.. .. ........+...+.
T Consensus 62 ~~~~~v~~~~p-~~~l~~~~~~~~~--~~~~~~~~~~l~~~~~g-~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~ 137 (144)
T cd07825 62 RITNHVVAFEE-NRLIAWRPGPAGQ--EPGGHRWRWELEPIGPG-RTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLD 137 (144)
T ss_pred EEEEEEEEECC-CCEEEEEccCCCC--CCCceeEEEEEEECCCC-cEEEEEEEeccCChhhhhccccCCCCHHHHHHHHH
Confidence 34556777765 5568998642222 22334567888887766 8999999998866431 11 12223455667788
Q ss_pred HHHHHH
Q 039477 82 DIDAHL 87 (92)
Q Consensus 82 ~ie~~l 87 (92)
.|++++
T Consensus 138 ~L~~~~ 143 (144)
T cd07825 138 RLATLA 143 (144)
T ss_pred HHHHHh
Confidence 888776
No 12
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.53 E-value=0.086 Score=32.68 Aligned_cols=42 Identities=21% Similarity=0.293 Sum_probs=35.3
Q ss_pred CCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477 17 NYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN 63 (92)
Q Consensus 17 ~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~ 63 (92)
.+.++|+..+|. +...+....++.|.++ +|.|+|+.+++...
T Consensus 73 ~~~i~~~~~~~~---~~~~~~~~~~~~~~~~--~t~vt~~~~~~~~~ 114 (140)
T cd07819 73 AGSVSWTLVEGE---GNRSQEGSYTLTPKGD--GTRVTFDLTVELTV 114 (140)
T ss_pred CCcEEEEEeccc---ceeEEEEEEEEEECCC--CEEEEEEEEEEecC
Confidence 678999999875 4777889999999865 69999999999865
No 13
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=96.47 E-value=0.076 Score=32.88 Aligned_cols=56 Identities=5% Similarity=-0.101 Sum_probs=41.5
Q ss_pred eeEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477 4 QIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN 63 (92)
Q Consensus 4 ~~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~ 63 (92)
..++.++..+| .++.+.|+...++. .+.-....+++|.|.+ + +|.++|+.++....
T Consensus 57 ~~~~~~i~~~~-~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~-~-~T~v~~~~~~~~~~ 112 (139)
T cd07814 57 GWVSGEVLEVE-PPRRLVFTWAFSDE-TPGPETTVTVTLEETG-G-GTRLTLTHSGFPEE 112 (139)
T ss_pred EeccEEEEEEc-CCCeEEEEecccCC-CCCCceEEEEEEEECC-C-CEEEEEEEEccChH
Confidence 35677888887 45789999988753 1233467788888887 3 79999999988764
No 14
>PRK10724 hypothetical protein; Provisional
Probab=96.22 E-value=0.056 Score=35.91 Aligned_cols=50 Identities=16% Similarity=0.309 Sum_probs=38.7
Q ss_pred EEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477 7 KEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN 63 (92)
Q Consensus 7 kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~ 63 (92)
..|.. ++. .+++.+.+++| +++.+.+..+|.|.+++ +|.|+...+|+-..
T Consensus 76 ~srv~-~~~-~~~I~~~~~~G----pF~~l~g~W~f~p~~~~-~t~V~~~l~fef~s 125 (158)
T PRK10724 76 TTRNQ-LTS-NQSILMQLVDG----PFKKLIGGWKFTPLSQE-ACRIEFHLDFEFTN 125 (158)
T ss_pred EEEEE-ecC-CCEEEEEecCC----ChhhccceEEEEECCCC-CEEEEEEEEEEEch
Confidence 34444 343 44789999988 47789999999998766 79999999999664
No 15
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.15 E-value=0.16 Score=32.21 Aligned_cols=51 Identities=16% Similarity=0.108 Sum_probs=37.7
Q ss_pred EEEEEEeeCCCCEEEEEEEecccccce-eEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477 7 KEIIEAIDNENYITNYKVIEGNLLELY-KSFSSTVKVTPKENDDGSLVHWIFEYEKLN 63 (92)
Q Consensus 7 kErl~~~D~~~~~~~y~i~eg~~~~~~-~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~ 63 (92)
..++..++ .++.+.|++..++. + .....++.+.|. ++ ||.++|+.+|+...
T Consensus 67 ~~~v~~~~-p~~~i~~~~~~~~~---~~~~~~~~~~~~~~-~~-gT~v~~~~~~~~~~ 118 (150)
T cd07818 67 EMEITESV-PNERIEYELRFIKP---FEATNDVEFTLEPV-GG-GTKVTWGMSGELPF 118 (150)
T ss_pred EEEEEecC-CCcEEEEEEEecCC---ccccceEEEEEEEc-CC-ceEEEEEEEecCCc
Confidence 44566665 46779999985433 3 367899999998 44 79999999998664
No 16
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.12 E-value=0.14 Score=31.68 Aligned_cols=52 Identities=21% Similarity=0.247 Sum_probs=37.5
Q ss_pred eEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477 5 IAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN 63 (92)
Q Consensus 5 ~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~ 63 (92)
....++..++ .++.+.|....|. + .+..+++|.|.+++ +|.+++++.|++..
T Consensus 56 ~~~~~v~~~~-~~~~i~~~~~~~~----~-~~~~~~~f~~~~~~-~T~vt~~~~~~~~~ 107 (139)
T cd07817 56 EWDAEITEQV-PNERIAWRSVEGA----D-PNAGSVRFRPAPGR-GTRVTLTIEYEPPG 107 (139)
T ss_pred EEEEEEeccC-CCCEEEEEECCCC----C-CcceEEEEEECCCC-CeEEEEEEEEECCc
Confidence 3445555444 4556999887764 2 46688889887665 89999999999775
No 17
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=95.94 E-value=0.2 Score=31.14 Aligned_cols=52 Identities=8% Similarity=0.006 Sum_probs=36.3
Q ss_pred EEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477 8 EIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN 63 (92)
Q Consensus 8 Erl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~ 63 (92)
-++..+|+ ++.+.++....+. .....+..++++.|. ++ ||.++|+++|+..+
T Consensus 63 ~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~l~~~-~~-gT~v~~~~~~~~~g 114 (144)
T cd05018 63 VELSDLDP-PESYTITGEGKGG-AGFVKGTARVTLEPD-GG-GTRLTYTADAQVGG 114 (144)
T ss_pred EEEEecCC-CcEEEEEEEEcCC-CceEEEEEEEEEEec-CC-cEEEEEEEEEEEcc
Confidence 44444443 4667777654322 145678999999997 45 89999999999765
No 18
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=94.95 E-value=0.55 Score=29.93 Aligned_cols=52 Identities=10% Similarity=0.036 Sum_probs=32.3
Q ss_pred EEEeeCCCCEEEEEEEecccc-cceeEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477 10 IEAIDNENYITNYKVIEGNLL-ELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN 63 (92)
Q Consensus 10 l~~~D~~~~~~~y~i~eg~~~-~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~ 63 (92)
+..++...+.+.++.-..+.. ..--....++++.| .++ +|.++|+++++..+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~l~~-~~~-gT~v~~~~~~~~~g 115 (146)
T cd07823 63 LLEDDEAARRAVLEATGKDARGQGTAEATVTLRLSP-AGG-GTRVTVDTDLALTG 115 (146)
T ss_pred EEeccCCCcEEEEEEEEecCCCcceEEEEEEEEEEe-cCC-cEEEEEEEEEEEee
Confidence 444444677777775542111 11114566777878 334 89999999998654
No 19
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=94.06 E-value=0.82 Score=28.15 Aligned_cols=50 Identities=8% Similarity=-0.104 Sum_probs=34.2
Q ss_pred EEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEc
Q 039477 6 AKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKL 62 (92)
Q Consensus 6 ~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~ 62 (92)
+..++..+++ .+.++++.... ...+..+++|.|.+++ +|.+.|+.+|...
T Consensus 59 ~~~~i~~~~p-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~t~l~~~~~~~~~ 108 (138)
T cd08862 59 STFTVTELRP-GHSFTWTGPAP-----GISAVHRHEFEAKPDG-GVRVTTSESLSGP 108 (138)
T ss_pred eEEEEEEecC-CCEEEEEecCC-----CEEEEEEEEEEEcCCC-cEEEEEEEEeecc
Confidence 4567777774 45677765432 2334578888887655 8999999988753
No 20
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=93.28 E-value=0.6 Score=29.41 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=35.5
Q ss_pred EEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEc
Q 039477 7 KEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKL 62 (92)
Q Consensus 7 kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~ 62 (92)
+-++..++ .++.+++..+.|+ +..+..+..+.|.++ ||.++++++|+..
T Consensus 64 ~~~it~~~-p~~~f~~~~~~G~----~~~w~h~~~f~~~~~--gT~vt~~v~~~~p 112 (137)
T cd07820 64 TTEITEVE-PPRRFVDEQVSGP----FRSWRHTHRFEAIGG--GTLMTDRVEYRLP 112 (137)
T ss_pred EEEEEEEc-CCCeEEEEeccCC----chhCEEEEEEEECCC--ceEEEEEEEEeCC
Confidence 34445554 4667888888774 455667777878654 7999999999974
No 21
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=91.10 E-value=1.6 Score=28.96 Aligned_cols=80 Identities=10% Similarity=0.103 Sum_probs=50.6
Q ss_pred EEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCC-C---ChhhHHH-HHHHHHH
Q 039477 7 KEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDV-P---DPTGKLQ-ILIDVAK 81 (92)
Q Consensus 7 kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~-~---~~~~~~~-~~~~~~k 81 (92)
+=++..+|+..++++-..-+|.. ..+-..++.+++.|.++ +|++.|.+.-+-.+--. . -.+...+ +...+|+
T Consensus 61 ~~~~~~v~~~~~~~~i~g~G~~~-~g~~~~~~~v~l~~~g~--gt~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~ 137 (146)
T COG3427 61 RVRFVNVDEPPRSITINGSGGGA-AGFADGTVDVQLEPSGE--GTRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFD 137 (146)
T ss_pred EEEEccccCCCcEEEEEeecccc-cceeeeeeEEEEEEcCC--CcEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34556678888888888877433 46777888999988765 59999999966543210 0 0111122 2335667
Q ss_pred HHHHHHhc
Q 039477 82 DIDAHLLS 89 (92)
Q Consensus 82 ~ie~~l~~ 89 (92)
+|.++|.+
T Consensus 138 ~l~~~l~~ 145 (146)
T COG3427 138 CLSSELAA 145 (146)
T ss_pred HHHHHHhc
Confidence 77666643
No 22
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=90.06 E-value=3.7 Score=26.59 Aligned_cols=75 Identities=13% Similarity=0.026 Sum_probs=47.0
Q ss_pred EEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHHHHHHHHHHHHH
Q 039477 6 AKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAKDIDA 85 (92)
Q Consensus 6 ~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie~ 85 (92)
..-++..+| .++.+.|+...++. .-..+++|.+.+ + ||.++.+.++.+.. ............++..|.+
T Consensus 65 ~~~~v~e~~-p~~~l~~~~~~~~~-----~~~~~~~l~~~~-~-gT~v~~~~~~~~~~---~~~~~~~~GW~~~L~~Lk~ 133 (157)
T cd08899 65 ATGTILACE-PPRLLAFTWGEGGG-----ESEVRFELAPEG-D-GTRLTLTHRLLDER---FGAGAVGAGWHLCLDVLEA 133 (157)
T ss_pred cceEEEEEc-CCcEEEEEecCCCC-----CceEEEEEEEcC-C-CEEEEEEEeccCch---hhhhhhcccHHHHHHHHHH
Confidence 345666665 45677887765542 235577777754 4 79998888876543 1223334456677888888
Q ss_pred HHhcCC
Q 039477 86 HLLSQQ 91 (92)
Q Consensus 86 ~l~~~~ 91 (92)
|+-+.+
T Consensus 134 ~~e~~~ 139 (157)
T cd08899 134 ALEGGP 139 (157)
T ss_pred HHcCCC
Confidence 877655
No 23
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=89.94 E-value=3.6 Score=26.25 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=32.4
Q ss_pred EEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477 9 IIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN 63 (92)
Q Consensus 9 rl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~ 63 (92)
++..+|+.++.. ..+-..+.. .-.+..+.+++...+++ +|.+.|+++++-.+
T Consensus 59 ~~~~~~~~~~~~-~~~~g~g~~-~~~~~~~~~~~~~~~~~-~T~v~~~~~~~~~G 110 (140)
T PF06240_consen 59 RITEIDPPESYT-LEFEGRGRG-GGSSASANITLSLEDDG-GTRVTWSADVEVGG 110 (140)
T ss_dssp EEEEEETTTEEE-EEEEEEECT-CCEEEEEEEEEEECCCT-CEEEEEEEEEEEEC
T ss_pred EEEEcCCCcceE-eeeeccCCc-cceEEEEEEEEEcCCCC-CcEEEEEEEEEEcc
Confidence 455666666552 444333332 23345667777766666 59999999999765
No 24
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=88.98 E-value=4.2 Score=25.79 Aligned_cols=76 Identities=12% Similarity=-0.058 Sum_probs=39.6
Q ss_pred EEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCC-CChhhHHHHHHHHHHHHHHHH
Q 039477 9 IIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDV-PDPTGKLQILIDVAKDIDAHL 87 (92)
Q Consensus 9 rl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~-~~~~~~~~~~~~~~k~ie~~l 87 (92)
++..++ ..+.+.|+---.+. +-.....++++.|.+ + +|.++.+..|....... .......+....++..|++||
T Consensus 66 ~~~ei~-p~~~l~~t~~~~~~--~~~~s~v~~~l~~~~-~-gT~l~l~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l 140 (142)
T cd07826 66 VYHEVT-PPERIVQTEEFEGL--PDGVALETVTFTELG-G-RTRLTATSRYPSKEARDGVLASGMEEGMEESYDRLDELL 140 (142)
T ss_pred EEEEEc-CCCEEEEEeEecCC--CCCceEEEEEEEECC-C-CEEEEEEEEeCCHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 445554 34445554322221 112245678888864 4 79999876653211100 011122345667889999988
Q ss_pred hc
Q 039477 88 LS 89 (92)
Q Consensus 88 ~~ 89 (92)
.+
T Consensus 141 ~~ 142 (142)
T cd07826 141 AS 142 (142)
T ss_pred hC
Confidence 64
No 25
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=88.82 E-value=1.9 Score=28.65 Aligned_cols=46 Identities=20% Similarity=0.379 Sum_probs=36.4
Q ss_pred eeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477 13 IDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN 63 (92)
Q Consensus 13 ~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~ 63 (92)
+++..+++.-++++| |++-..++.++.|-+++ +|.|+--++|+-.+
T Consensus 68 ~~~~~~~I~~~l~~G----PFk~L~~~W~F~pl~~~-~ckV~f~ldfeF~s 113 (146)
T COG2867 68 LKPTARSIDMKLIDG----PFKYLKGGWQFTPLSED-ACKVEFFLDFEFKS 113 (146)
T ss_pred ecCchhhhhhhhhcC----ChhhhcCceEEEECCCC-ceEEEEEEEeeehh
Confidence 445555777777777 66778899999997555 89999999999875
No 26
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=88.63 E-value=4.4 Score=25.50 Aligned_cols=72 Identities=15% Similarity=0.123 Sum_probs=39.0
Q ss_pred EEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCC-ChhhHHHHHHHHHHHHHHHH
Q 039477 9 IIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVP-DPTGKLQILIDVAKDIDAHL 87 (92)
Q Consensus 9 rl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~-~~~~~~~~~~~~~k~ie~~l 87 (92)
++.+++ .++.+.|+...++. ....+++|.|.+ + +|.++.+..|........ ......+....++..|++||
T Consensus 66 ~v~e~~-p~~~l~~t~~~~~~-----~~~v~~~~~~~~-~-gT~ltl~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l 137 (139)
T cd08894 66 VFLEIE-PPERIVYDHGSGPP-----RFRLTVTFEEQG-G-KTRLTWRQVFPTAAERCEKIKFGAVEGNEQTLDRLAAYL 137 (139)
T ss_pred EEEEEc-CCCEEEEEeccCCC-----cEEEEEEEEECC-C-CEEEEEEEEcCCHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 455564 45667776644321 145678888865 4 799888866432110000 00111234557788888877
Q ss_pred h
Q 039477 88 L 88 (92)
Q Consensus 88 ~ 88 (92)
.
T Consensus 138 ~ 138 (139)
T cd08894 138 A 138 (139)
T ss_pred h
Confidence 4
No 27
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=88.47 E-value=4.6 Score=25.57 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=29.4
Q ss_pred CCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477 15 NENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN 63 (92)
Q Consensus 15 ~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~ 63 (92)
+..+.+.+.. +|++ . ...+++|.|.++ ||.|+++.+++..+
T Consensus 73 ~p~~~~~~~~-~g~~--~---~~~~~~~~~~~~--gt~vt~~~~~~~~~ 113 (146)
T cd07824 73 EPLSLLEVRA-SGDL--E---GVGRWTLAPDGS--GTVVRYDWEVRTTK 113 (146)
T ss_pred cCCcEEEEEE-EEee--e---EEEEEEEEEcCC--CEEEEEEEEEEcCH
Confidence 4566788874 5654 2 257788888643 79999999999754
No 28
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=87.39 E-value=4.1 Score=25.26 Aligned_cols=78 Identities=9% Similarity=-0.006 Sum_probs=43.0
Q ss_pred EEEEEeeCCCCEEEEEEEecc----c-ccceeEEEEEEEEEeeCCCCceEEEEEEE-EEEcCCCCC--ChhhHHHHHHHH
Q 039477 8 EIIEAIDNENYITNYKVIEGN----L-LELYKSFSSTVKVTPKENDDGSLVHWIFE-YEKLNEDVP--DPTGKLQILIDV 79 (92)
Q Consensus 8 Erl~~~D~~~~~~~y~i~eg~----~-~~~~~~~~~ti~v~p~~~g~~~~v~W~~~-ye~~~~~~~--~~~~~~~~~~~~ 79 (92)
=++..++ .++.+.|+...+. . ...-.....+++|.|.++ +|.++++-. |...+.... ......+....+
T Consensus 59 ~~i~~~~-p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--gT~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~ 135 (145)
T cd08898 59 VTVVEVD-PPRRFSFRWHPPAIDPGEDYSAEPSTLVEFTLEPIAG--GTLLTVTESGFDALPAERRAEAYRMNEGGWDEQ 135 (145)
T ss_pred EEEEEeC-CCcEEEEEecCCCcccccccCCCCceEEEEEEEecCC--cEEEEEEEcCCCCCChHHHHHHHHhhhhhHHHH
Confidence 3555554 5677777765432 1 001223457888888753 799999876 432211100 111223455678
Q ss_pred HHHHHHHHh
Q 039477 80 AKDIDAHLL 88 (92)
Q Consensus 80 ~k~ie~~l~ 88 (92)
+..|++||-
T Consensus 136 l~~L~~~le 144 (145)
T cd08898 136 LENLVAYVE 144 (145)
T ss_pred HHHHHHHhc
Confidence 888888874
No 29
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=84.85 E-value=7.6 Score=24.45 Aligned_cols=74 Identities=22% Similarity=0.217 Sum_probs=42.5
Q ss_pred EEEEeeCCCCEEEEEE--EecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHHHHHHHHHHHHHH
Q 039477 9 IIEAIDNENYITNYKV--IEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAKDIDAH 86 (92)
Q Consensus 9 rl~~~D~~~~~~~y~i--~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie~~ 86 (92)
++.+++ ..+.+.|+- -.++. +...-..++.+.|.+ + +|.++.+-..-..++. ...+........++..|+++
T Consensus 67 ~~~~~~-p~~~l~~t~~~~~~~~--~~~~s~v~~~l~~~~-~-gT~l~~~~~~~~~~~~-~~~~~~~~GW~~~l~~L~~~ 140 (143)
T cd08900 67 RYHDIV-PDERIVYTYTMHIGGT--LLSASLATVEFAPEG-G-GTRLTLTEQGAFLDGD-DDPAGREQGTAALLDNLAAE 140 (143)
T ss_pred EEEEec-CCceEEEEEeeccCCc--cccceEEEEEEEECC-C-CEEEEEEEEEeccccc-chhhhHHHHHHHHHHHHHHH
Confidence 455565 455565554 22322 222244678888864 3 7999888775433221 12334455667788888888
Q ss_pred Hh
Q 039477 87 LL 88 (92)
Q Consensus 87 l~ 88 (92)
|-
T Consensus 141 l~ 142 (143)
T cd08900 141 LE 142 (143)
T ss_pred Hh
Confidence 74
No 30
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=84.84 E-value=7.7 Score=24.55 Aligned_cols=75 Identities=11% Similarity=-0.059 Sum_probs=43.6
Q ss_pred EEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHHHHHHHHHHHHHH
Q 039477 7 KEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAKDIDAH 86 (92)
Q Consensus 7 kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie~~ 86 (92)
.=++..++ .++.++|+..-.+-..+ .....++.+.+.+ + +|.++++...-+.. .......+....++..|++|
T Consensus 71 ~g~v~~v~-p~~~i~~~~~~~~~~~~-~~~~v~~~~~~~~-~-~T~lt~~~~~~~~~---~~~~~~~~GW~~~l~~L~~~ 143 (146)
T cd08895 71 GGRFLELV-PNERIVYTDVFDDPSLS-GEMTMTWTLSPVS-G-GTDVTIVQSGIPDG---IPPEDCELGWQESLANLAAL 143 (146)
T ss_pred EEEEEEEc-CCCEEEEEEEecCCCCC-ceEEEEEEEEecC-C-CEEEEEEEeCCCch---hhhhHHHHHHHHHHHHHHHH
Confidence 33566675 45566666432211102 2336778887765 3 79999888743211 12334456677888899888
Q ss_pred Hh
Q 039477 87 LL 88 (92)
Q Consensus 87 l~ 88 (92)
|-
T Consensus 144 le 145 (146)
T cd08895 144 VE 145 (146)
T ss_pred hc
Confidence 74
No 31
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=84.47 E-value=8.1 Score=24.46 Aligned_cols=76 Identities=8% Similarity=-0.106 Sum_probs=39.9
Q ss_pred EEEEEEeeCCCCEEEEE--EEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhH-----HHHHHHH
Q 039477 7 KEIIEAIDNENYITNYK--VIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGK-----LQILIDV 79 (92)
Q Consensus 7 kErl~~~D~~~~~~~y~--i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~-----~~~~~~~ 79 (92)
.=++.++|+ .+++.|+ +.++.....-..-..++++.|.+ + ||+++.+..+... ...+.. .+....+
T Consensus 64 ~g~v~~i~p-~~~l~~t~~~~~~~~~~~~~~~~v~~~~~~~~-~-gT~Ltl~~~~~~~----~~~~~~~~~~~~~GW~~~ 136 (146)
T cd08896 64 PGCFLEVVP-GERLVFTDALTPGWRPAEKPFMTAIITFEDEG-G-GTRYTARARHWTE----ADRKQHEEMGFHDGWGTA 136 (146)
T ss_pred eEEEEEEeC-CCEEEEEEeecCCcCCCCCCcEEEEEEEEecC-C-cEEEEEEEEeCCH----HHHHHHHHcCHHHHHHHH
Confidence 345666764 4555555 32221110111135678888864 3 7998876543211 011111 3456688
Q ss_pred HHHHHHHHhc
Q 039477 80 AKDIDAHLLS 89 (92)
Q Consensus 80 ~k~ie~~l~~ 89 (92)
+..|++||.+
T Consensus 137 l~~L~~~l~~ 146 (146)
T cd08896 137 ADQLAALAES 146 (146)
T ss_pred HHHHHHHHhC
Confidence 8899998753
No 32
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=81.72 E-value=11 Score=23.94 Aligned_cols=77 Identities=9% Similarity=-0.135 Sum_probs=40.8
Q ss_pred EEEEeeCCCCEEEEEEEecc-c--ccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCC-CCC---hhhHHHHHHHHHH
Q 039477 9 IIEAIDNENYITNYKVIEGN-L--LELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNED-VPD---PTGKLQILIDVAK 81 (92)
Q Consensus 9 rl~~~D~~~~~~~y~i~eg~-~--~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~-~~~---~~~~~~~~~~~~k 81 (92)
++.+++ ..+.++|+-.-++ . .... .-..++++.|.+++ +|+++.+-..-..... ... .....+....++.
T Consensus 65 ~v~~v~-p~~~l~~tw~~~~~~~~~~~~-~t~vt~~l~~~~~~-gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~ 141 (149)
T cd08891 65 TVLAWE-PPSRLVFTWQINADWRPDPDK-ASEVEVRFEAVGAE-GTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLE 141 (149)
T ss_pred EEEEEc-CCCEEEEEeccCCCcCcCCCC-ceEEEEEEEECCCC-CeEEEEEEecccccCcchhhHHHHhcccCcHHHHHH
Confidence 456665 4556666644111 1 1111 23577888886534 7998888776433210 001 1122334556788
Q ss_pred HHHHHHh
Q 039477 82 DIDAHLL 88 (92)
Q Consensus 82 ~ie~~l~ 88 (92)
.|+++|-
T Consensus 142 ~L~~~l~ 148 (149)
T cd08891 142 RYAAAAE 148 (149)
T ss_pred HHHHHhc
Confidence 8888763
No 33
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=81.56 E-value=12 Score=24.22 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=34.9
Q ss_pred eeCCCCEEEEE-EEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCC
Q 039477 13 IDNENYITNYK-VIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNED 65 (92)
Q Consensus 13 ~D~~~~~~~y~-i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~ 65 (92)
+|...+++.+. ..+| ++.....+.+|+|.++ ||.|++..+|+-.++.
T Consensus 69 ~~~~~~~i~~~~~~~~----p~~~m~~~W~f~~~~~--gT~V~~~~~~~~~~~~ 116 (146)
T cd08860 69 LDPVNRTVRARRVETG----PFAYMNIRWEYTEVPE--GTRMRWVQDFEMKPGA 116 (146)
T ss_pred ecCCCcEEEEEEecCC----CcceeeeeEEEEECCC--CEEEEEEEEEEECCCC
Confidence 56777777763 2222 5778888999999854 5999999999977543
No 34
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=80.28 E-value=11 Score=22.97 Aligned_cols=75 Identities=8% Similarity=-0.139 Sum_probs=41.2
Q ss_pred EEEEEeeCCCCEEEEEEEecccc--cceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHHHHHHHHHHHHH
Q 039477 8 EIIEAIDNENYITNYKVIEGNLL--ELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAKDIDA 85 (92)
Q Consensus 8 Erl~~~D~~~~~~~y~i~eg~~~--~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie~ 85 (92)
=++.+++ .++.++|+...++.. ..-.....++.+.|.++ +|.++.+.+-...+. .........+..+++.|.+
T Consensus 58 ~~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~v~~~l~~~~~--~t~l~~~~~~~~~~~--~~~~~~~~gw~~~l~~Lk~ 132 (136)
T cd08893 58 GEVLESD-PPRRLVHTWRAVWDPEMAAEPPSRVTFEIEPVGD--VVKLTVTHDGFPPGS--PTLEGVSGGWPAILSSLKT 132 (136)
T ss_pred eEEEEec-CCCeEEEEEecCCCcccCCCCCEEEEEEEEecCC--cEEEEEEecCCCCch--hHHHhhhcCHHHHHHHHHH
Confidence 3455565 566666666533221 12234666777878643 687777766432221 1122334455677888888
Q ss_pred HH
Q 039477 86 HL 87 (92)
Q Consensus 86 ~l 87 (92)
+|
T Consensus 133 ~~ 134 (136)
T cd08893 133 LL 134 (136)
T ss_pred Hh
Confidence 76
No 35
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=80.17 E-value=11 Score=22.96 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=38.0
Q ss_pred EEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCC-CCceEEEEEEEEEEcCCCCCChhhHHH
Q 039477 7 KEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKEN-DDGSLVHWIFEYEKLNEDVPDPTGKLQ 74 (92)
Q Consensus 7 kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~-g~~~~v~W~~~ye~~~~~~~~~~~~~~ 74 (92)
..++. .+...+ +.+..++| +++.+..+.++.|.++ .+||.++++.+|+..... +.|..+..
T Consensus 54 ~~~~~-~~~~~~-~~~~~~~g----~~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~-~~~~~~~~ 115 (130)
T PF03364_consen 54 TSRVT-EDPPER-IRFEQISG----PFKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPG-PLPGFLAR 115 (130)
T ss_dssp EEEEE-EECTTT-EEEESSET----TEEEEEEEEEEEEETTECCEEEEEEEEEEEEETSS-SSHHHHHH
T ss_pred EEEEE-EEEeee-eeeeecCC----CchhcEEEEEEEECCCCcCCCEEEEEEEEEEecCc-HhHHHHHH
Confidence 34444 233333 66676666 6888999999999875 115777788887764332 33544433
No 36
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=75.07 E-value=17 Score=22.53 Aligned_cols=64 Identities=16% Similarity=0.185 Sum_probs=38.5
Q ss_pred EEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHHHHHHHHHHHHHHHh
Q 039477 10 IEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAKDIDAHLL 88 (92)
Q Consensus 10 l~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 88 (92)
+..++ ..+.+.|+..++ ...++++.|.+ + ||.++-+ +...+. ...+........++..|++||-
T Consensus 69 ~~ei~-p~~~l~~~~~~~--------~~v~~~l~~~~-~-gT~l~l~--~~~~~~--~~~~~~~~GW~~~l~~L~~~le 132 (133)
T cd08897 69 YTEVE-PHKLIEYTMEDG--------REVEVEFTEEG-D-GTKVVET--FDAENE--NPVEMQRQGWQAILDNFKKYVE 132 (133)
T ss_pred EEEEC-CCCEEEEEcCCC--------CEEEEEEEECC-C-CEEEEEE--ECCCCC--CcHHHHHHHHHHHHHHHHHHhh
Confidence 34443 566777775322 24688888864 3 7988865 333221 1233445566788889998874
No 37
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=72.74 E-value=21 Score=22.49 Aligned_cols=50 Identities=8% Similarity=-0.084 Sum_probs=29.8
Q ss_pred EEEEEEEeeCCCCceEEEEEEEEEEcCCCC---CChhhHHHHHHH-HHHHHHHHH
Q 039477 37 SSTVKVTPKENDDGSLVHWIFEYEKLNEDV---PDPTGKLQILID-VAKDIDAHL 87 (92)
Q Consensus 37 ~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~---~~~~~~~~~~~~-~~k~ie~~l 87 (92)
..++++.|.++| +|.++-+-.--+..+.. ...+...+.... ++..|+++|
T Consensus 73 ~vt~~~~~~~~g-~T~lt~~~~g~~~~~~~~~~~~~~~~~~GW~~~~ld~L~~~l 126 (132)
T PTZ00220 73 KVTIEFRAVEED-HTELKLTQTGIPSLDKFGNGGCLERCRNGWTQNFLDRFEKIL 126 (132)
T ss_pred EEEEEEEeCCCC-cEEEEEEEecCccccccCCCchhhHHHhChHHHHHHHHHHHh
Confidence 478888886555 79888887732222111 113334445555 688888876
No 38
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=67.78 E-value=38 Score=24.08 Aligned_cols=57 Identities=7% Similarity=-0.045 Sum_probs=40.1
Q ss_pred eeEEEEEEEEEeeCCCCceEEEEEEEEEEcCC--CCCChhhHHHHHHHHHHHHHHHHhcC
Q 039477 33 YKSFSSTVKVTPKENDDGSLVHWIFEYEKLNE--DVPDPTGKLQILIDVAKDIDAHLLSQ 90 (92)
Q Consensus 33 ~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~--~~~~~~~~~~~~~~~~k~ie~~l~~~ 90 (92)
...+.+-..+.|.+++ +|.|......+|.-- -.-+..++-..+...|++.+.||..|
T Consensus 177 ~~~~~ggW~I~p~~~~-~t~VtY~~~~dPg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (235)
T cd08873 177 TEVACAGFVIRQDCGT-CTEVSYYNETNPKLLSYVTCNLAGLSALYCRTFHCCEQFLVTN 235 (235)
T ss_pred EEEEeeeEEEEECCCC-cEEEEEEEEcCCCccceeeecchhhhHHHHHHHHHHHHHhccC
Confidence 5566777888888766 899999888776521 11134455556778999999999765
No 39
>PRK01844 hypothetical protein; Provisional
Probab=62.73 E-value=12 Score=21.91 Aligned_cols=13 Identities=23% Similarity=0.192 Sum_probs=11.5
Q ss_pred HHHHHHHHhcCCC
Q 039477 80 AKDIDAHLLSQQP 92 (92)
Q Consensus 80 ~k~ie~~l~~~~~ 92 (92)
-|-++.||..|||
T Consensus 26 rk~~~k~lk~NPp 38 (72)
T PRK01844 26 RKYMMNYLQKNPP 38 (72)
T ss_pred HHHHHHHHHHCCC
Confidence 3789999999997
No 40
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=60.63 E-value=46 Score=21.94 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=36.1
Q ss_pred eEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHH-----HHHHHHHHHHHHHhcCC
Q 039477 34 KSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQ-----ILIDVAKDIDAHLLSQQ 91 (92)
Q Consensus 34 ~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~-----~~~~~~k~ie~~l~~~~ 91 (92)
..+.+.+.+.|.+++ .|.|.+...-++.+. -|.-+.. ....+++.+-++|..++
T Consensus 146 ~~~~s~~~i~~~~~~-~~~vt~~~~~D~~G~---iP~~~~n~~~~~~~~~~~~~~~~~~~~~~ 204 (206)
T PF01852_consen 146 EILISGWVIRPLGDG-RTRVTYVSQVDPKGW---IPSWLVNMVVKSQPPNFLKNLRKALKKQK 204 (206)
T ss_dssp EEESEEEEEEEETTC-EEEEEEEEEEESSSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred eeeeEeEEEEEccCC-CceEEEEEEECCCCC---ChHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 355667888898877 699999999887763 2333322 33466777777776553
No 41
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=58.35 E-value=56 Score=22.19 Aligned_cols=53 Identities=9% Similarity=-0.022 Sum_probs=35.1
Q ss_pred eeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhH-----HHHHHHHHHHHHHHHh
Q 039477 33 YKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGK-----LQILIDVAKDIDAHLL 88 (92)
Q Consensus 33 ~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~-----~~~~~~~~k~ie~~l~ 88 (92)
...+.+-+.++|.+++ .|.+++.+..+|.+.-.| ..+ +...-.+++.|...+.
T Consensus 156 ~~~~~~~~~i~p~~~~-~t~v~~~~~~DP~g~~IP--~~liN~~~k~~~~~~~~~l~k~~~ 213 (215)
T cd08877 156 RIIKYYGFVITPISPT-KCYLRFVANVDPKMSLVP--KSLLNFVARKFAGLLFEKIQKAAK 213 (215)
T ss_pred EEEecceEEEEEcCCC-CeEEEEEEEcCCCcccCC--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677888898777 899999998887765333 233 2333467777766543
No 42
>PRK00523 hypothetical protein; Provisional
Probab=56.63 E-value=18 Score=21.22 Aligned_cols=13 Identities=15% Similarity=0.284 Sum_probs=11.5
Q ss_pred HHHHHHHHhcCCC
Q 039477 80 AKDIDAHLLSQQP 92 (92)
Q Consensus 80 ~k~ie~~l~~~~~ 92 (92)
-|-++.||..|||
T Consensus 27 rk~~~k~l~~NPp 39 (72)
T PRK00523 27 KKMFKKQIRENPP 39 (72)
T ss_pred HHHHHHHHHHCcC
Confidence 3789999999997
No 43
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=56.59 E-value=55 Score=21.63 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=33.4
Q ss_pred eEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCC-hhh--HHHHHHHHHHHHHHHHh
Q 039477 34 KSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPD-PTG--KLQILIDVAKDIDAHLL 88 (92)
Q Consensus 34 ~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~-~~~--~~~~~~~~~k~ie~~l~ 88 (92)
..+.+-+.+.|.+++ .|.+.|....++.+. .|. ... .......+++.+.++|.
T Consensus 146 ~~~~~~~~i~p~~~~-~t~vt~~~~~D~~G~-iP~~lvn~~~~~~~~~~~~~~~~~~~ 201 (206)
T smart00234 146 ENLPSGLLIEPLGNG-PSKVTWVSHADLKGW-LPHWLVRSLIKSGLAEFAKTWVATLQ 201 (206)
T ss_pred EEeceEEEEEECCCC-CeEEEEEEEEecCCC-ccceeehhhhhhhHHHHHHHHHHHHH
Confidence 445666788887776 799999999888875 332 111 12333456666666554
No 44
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=55.50 E-value=42 Score=19.91 Aligned_cols=72 Identities=8% Similarity=-0.077 Sum_probs=40.5
Q ss_pred EEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhh-HHHHHHHHHHHHHHHH
Q 039477 9 IIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTG-KLQILIDVAKDIDAHL 87 (92)
Q Consensus 9 rl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~-~~~~~~~~~k~ie~~l 87 (92)
++.++++ ++.+.|+.--++.. +-..-..++.|.+ .++ +|.++-+..=.+... .... .......++..|.+||
T Consensus 51 ~v~~~~p-~~~i~~~~~~~~~~-~~~~~~v~~~~~~-~~~-~T~l~~~~~~~~~~~---~~~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 51 TVLEVEP-PERIVFTWRMPDDP-DGPESRVTFEFEE-EGG-GTRLTLTHSGFPDDD---EEEEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp EEEEEET-TTEEEEEEEEETSS-SCEEEEEEEEEEE-ETT-EEEEEEEEEEEHSHH---HHHHCHHHHHHHHHHHHHHHH
T ss_pred EEEEEeC-CEEEEEEEEccCCC-CCCceEEEEEEEE-cCC-cEEEEEEEEcCCccH---HHHHHHHHHHHHHHHHHHHHh
Confidence 4677764 45577775544331 1334567888888 434 788877773222110 1111 3445567778888876
No 45
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=54.75 E-value=64 Score=21.77 Aligned_cols=53 Identities=13% Similarity=0.288 Sum_probs=33.4
Q ss_pred EEEEEEEEeeCCC-CceEEEEEEEEEEcCCCCCC-hhhH--HHHHHHHHHHHHHHHhc
Q 039477 36 FSSTVKVTPKEND-DGSLVHWIFEYEKLNEDVPD-PTGK--LQILIDVAKDIDAHLLS 89 (92)
Q Consensus 36 ~~~ti~v~p~~~g-~~~~v~W~~~ye~~~~~~~~-~~~~--~~~~~~~~k~ie~~l~~ 89 (92)
+.+.+.+.|.+++ ++|.+.|.+..++.+. .|. .... ......+++.|.+++.+
T Consensus 151 ~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~~lvN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 151 GPGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQYLVDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred cccEEEEEECCCCCCceEEEEEEEECCCCC-CcceeeehhhHHHHHHHHHHHHHHHhh
Confidence 3345667776543 4799999999998864 332 1111 33445778888887753
No 46
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=53.43 E-value=23 Score=20.29 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCC
Q 039477 79 VAKDIDAHLLSQQP 92 (92)
Q Consensus 79 ~~k~ie~~l~~~~~ 92 (92)
.-+-++.||..|||
T Consensus 18 ar~~~~k~l~~NPp 31 (64)
T PF03672_consen 18 ARKYMEKQLKENPP 31 (64)
T ss_pred HHHHHHHHHHHCCC
Confidence 34889999999997
No 47
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=52.95 E-value=71 Score=21.79 Aligned_cols=53 Identities=13% Similarity=0.287 Sum_probs=34.2
Q ss_pred eeEEEEEEEEEeeCCC-CceEEEEEEEEEEcCCCCCChhhH-----HHHHHHHHHHHHHHHh
Q 039477 33 YKSFSSTVKVTPKEND-DGSLVHWIFEYEKLNEDVPDPTGK-----LQILIDVAKDIDAHLL 88 (92)
Q Consensus 33 ~~~~~~ti~v~p~~~g-~~~~v~W~~~ye~~~~~~~~~~~~-----~~~~~~~~k~ie~~l~ 88 (92)
...+.+-..+.|.+++ +.|.+.|.+..++.+. .| .-+ .+.....++.|.+++.
T Consensus 149 ~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP--~~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 149 AENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LP--KSIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred EEeeccEEEEEECCCCCCceEEEEEEeecCCCC-CC--HHHHHHHhHHhHHHHHHHHHHHHh
Confidence 3444556778887652 3899999999998875 22 223 2333467777777665
No 48
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=51.01 E-value=77 Score=21.60 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=30.5
Q ss_pred EEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHH-----HHHHHHHHHHHHHh
Q 039477 35 SFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQ-----ILIDVAKDIDAHLL 88 (92)
Q Consensus 35 ~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~-----~~~~~~k~ie~~l~ 88 (92)
.+.+.+.+.|.+++ +|.+.|.+..++.+. . |.-+.+ ....+++.|.+.+.
T Consensus 147 ~~~~g~~i~p~~~~-~t~vt~~~~~Dp~G~-I--P~~lvN~~~~~~~~~~l~~l~k~~~ 201 (222)
T cd08871 147 SLLTGYLIRPTGPK-GCTLTYVTQNDPKGS-L--PKWVVNKATTKLAPKVMKKLHKAAL 201 (222)
T ss_pred EEccEEEEEECCCC-CEEEEEEEecCCCCC-c--CHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455677787655 899999998888764 2 223322 22356666665554
No 49
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=50.81 E-value=55 Score=20.34 Aligned_cols=70 Identities=11% Similarity=-0.085 Sum_probs=36.6
Q ss_pred EEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhh---H---HHHHHHHHHH
Q 039477 9 IIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTG---K---LQILIDVAKD 82 (92)
Q Consensus 9 rl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~---~---~~~~~~~~k~ 82 (92)
++..++ ..+.+.|+.-.++ +. -..++++.+.++| +|.++-+-..-+.. +++. . ......++..
T Consensus 57 ~~~~~~-p~~~l~~~w~~~~---~~--s~v~~~l~~~~~g-gT~ltl~~~~~~~~----~~~~~~~~~~~~~GW~~~L~~ 125 (136)
T cd08901 57 NVLEIE-PNKRIVIEWGDPG---EP--TTVEWTFEELDDG-RTFVTITESGFPGT----DDEGLKQALGSTEGWTLVLAG 125 (136)
T ss_pred EEEEEc-CCCEEEEEecCCC---CC--EEEEEEEEECCCC-cEEEEEEECCCCCC----cHHHHHHHhcCCCCHHHHHHH
Confidence 344443 4566666654321 11 3357788776534 78877765432211 1211 1 2344567788
Q ss_pred HHHHHhc
Q 039477 83 IDAHLLS 89 (92)
Q Consensus 83 ie~~l~~ 89 (92)
|++||.+
T Consensus 126 L~~~le~ 132 (136)
T cd08901 126 LKAYLEH 132 (136)
T ss_pred HHHHHhc
Confidence 8888754
No 50
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=48.89 E-value=84 Score=21.43 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=32.9
Q ss_pred ceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHH-----HHHHHHHHHHHHH
Q 039477 32 LYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQ-----ILIDVAKDIDAHL 87 (92)
Q Consensus 32 ~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~-----~~~~~~k~ie~~l 87 (92)
.+..|.+.+.+.|.+++ +|.+.+...-+|.+. . |.-+.. ..-.+++.|...+
T Consensus 148 Rv~~~~~~~~i~p~~~~-~t~i~~~~~~DPgG~-I--P~wlvN~~~~~~~~~~l~~l~ka~ 204 (207)
T cd08910 148 RVKQYKQSLAIESDGKK-GSKVFMYYFDNPGGM-I--PSWLINWAAKNGVPNFLKDMQKAC 204 (207)
T ss_pred EEEEEEEEEEEEeCCCC-ceEEEEEEEeCCCCc-c--hHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46678888888887655 799888888776543 2 222222 2335667666654
No 51
>PRK08706 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=47.95 E-value=85 Score=22.33 Aligned_cols=38 Identities=3% Similarity=-0.061 Sum_probs=26.8
Q ss_pred EEEEEEEEcCCCCCChhhHHHHHHHHHHHHHHHHhcCCC
Q 039477 54 HWIFEYEKLNEDVPDPTGKLQILIDVAKDIDAHLLSQQP 92 (92)
Q Consensus 54 ~W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~ 92 (92)
.|.+.+.+.... .+.+++.+.+..+.+.+|+++.++|.
T Consensus 232 ~~~i~i~~~~~~-~~~~~~~~~t~~~~~~lE~~Ir~~P~ 269 (289)
T PRK08706 232 TVTLHFYPAWDS-FPSEDAQADAQRMNRFIEERVREHPE 269 (289)
T ss_pred cEEEEEecCCCC-CCCCCHHHHHHHHHHHHHHHHHcCcH
Confidence 466666654332 23345667788999999999999984
No 52
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.35 E-value=36 Score=19.91 Aligned_cols=12 Identities=25% Similarity=0.512 Sum_probs=11.2
Q ss_pred HHHHHHHhcCCC
Q 039477 81 KDIDAHLLSQQP 92 (92)
Q Consensus 81 k~ie~~l~~~~~ 92 (92)
|-++.||..|||
T Consensus 27 k~~~k~lk~NPp 38 (71)
T COG3763 27 KQMKKQLKDNPP 38 (71)
T ss_pred HHHHHHHhhCCC
Confidence 889999999997
No 53
>PRK05645 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=45.05 E-value=59 Score=23.22 Aligned_cols=38 Identities=13% Similarity=0.040 Sum_probs=27.3
Q ss_pred EEEEEEEEcCCCCCChhhHHHHHHHHHHHHHHHHhcCCC
Q 039477 54 HWIFEYEKLNEDVPDPTGKLQILIDVAKDIDAHLLSQQP 92 (92)
Q Consensus 54 ~W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~ 92 (92)
.|++.+++..... +.++..+.+..+.+.+|+++..+|.
T Consensus 238 ~y~i~~~~~~~~~-~~~~~~~~t~~~~~~lE~~Ir~~Pe 275 (295)
T PRK05645 238 GYKVILEAAPEDM-YSTDVEVSAAAMSKVVERYVRAYPS 275 (295)
T ss_pred eEEEEEecCCcCC-CCCCHHHHHHHHHHHHHHHHHcCcH
Confidence 5777776553322 2345667788999999999999984
No 54
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=44.74 E-value=89 Score=20.51 Aligned_cols=50 Identities=12% Similarity=0.056 Sum_probs=33.0
Q ss_pred eeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHH-----HHHHHHHHHHHH
Q 039477 33 YKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQ-----ILIDVAKDIDAH 86 (92)
Q Consensus 33 ~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~-----~~~~~~k~ie~~ 86 (92)
+..+.+...+.|.+++ +|.+++...+++.+. -|..+.. ....+++++++.
T Consensus 139 ~~~~~~~~~i~~~~~~-~t~vt~~~~~dp~g~---iP~~lv~~~~~~~~~~~l~~l~~~ 193 (195)
T cd08876 139 IKTVEGQWTFTPLGNG-KTRVTYQAYADPGGS---IPGWLANAFAKDAPYNTLENLRKQ 193 (195)
T ss_pred ceeceeeEEEEECCCC-eEEEEEEEEeCCCCC---CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777888888766 899999999988753 2333322 233556666554
No 55
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=44.71 E-value=59 Score=23.41 Aligned_cols=38 Identities=8% Similarity=0.045 Sum_probs=27.0
Q ss_pred EEEEEEEEcCCCCCChhhHHHHHHHHHHHHHHHHhcCCC
Q 039477 54 HWIFEYEKLNEDVPDPTGKLQILIDVAKDIDAHLLSQQP 92 (92)
Q Consensus 54 ~W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~ 92 (92)
.|.+.+++.-+. +..++..+.+..+.+.+|+++..+|.
T Consensus 248 ~~~i~~~~~~~~-~~~~~~~~~t~~~n~~lE~~Ir~~Pe 285 (305)
T TIGR02208 248 KFELTVRPAMAT-ELSVDPEQEARAMNKEVEQFILPYPE 285 (305)
T ss_pred eEEEEEecCCCC-CCCCCHHHHHHHHHHHHHHHHHcCch
Confidence 377777654332 23455567778999999999999984
No 56
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=42.42 E-value=1.1e+02 Score=20.78 Aligned_cols=53 Identities=11% Similarity=0.162 Sum_probs=33.7
Q ss_pred ceeEEEEEEEEEee--CCCCceEEEEEEEEEEcCCCCCChhhHHH-----HHHHHHHHHHHHHh
Q 039477 32 LYKSFSSTVKVTPK--ENDDGSLVHWIFEYEKLNEDVPDPTGKLQ-----ILIDVAKDIDAHLL 88 (92)
Q Consensus 32 ~~~~~~~ti~v~p~--~~g~~~~v~W~~~ye~~~~~~~~~~~~~~-----~~~~~~k~ie~~l~ 88 (92)
.+..|.+...+.|. +++ +|.+.++..-++.+ .. |.-+.. ..-++++.|...+.
T Consensus 148 Rv~~~~~~~~i~p~~~~~~-~t~~~~~~~~dp~G-~I--P~wlvN~~~~~~~~~~l~~l~~a~~ 207 (209)
T cd08870 148 RVDDYESSLVIRAVKGDGQ-GSACEVTYFHNPDG-GI--PRELAKLAVKRGMPGFLKKLENALR 207 (209)
T ss_pred EEEEEEeEEEEEEecCCCC-ceEEEEEEEECCCC-CC--CHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 46778888888887 444 78888888877643 33 323322 23366777776654
No 57
>PRK08733 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=40.93 E-value=68 Score=23.11 Aligned_cols=38 Identities=8% Similarity=0.057 Sum_probs=27.6
Q ss_pred EEEEEEEEcCCCCCChhhHHHHHHHHHHHHHHHHhcCCC
Q 039477 54 HWIFEYEKLNEDVPDPTGKLQILIDVAKDIDAHLLSQQP 92 (92)
Q Consensus 54 ~W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~ 92 (92)
.|.+.+++.... .+..++.+.+..+.+.+|+++..+|.
T Consensus 248 ~y~i~i~~~~~~-~~~~~i~~~t~~~~~~lE~~Ir~~P~ 285 (306)
T PRK08733 248 RYVLKIAPPLAD-FPSDDVIADTTRVNAAIEDMVREAPD 285 (306)
T ss_pred eEEEEEECCCCC-CCCCCHHHHHHHHHHHHHHHHHcCcH
Confidence 577777654332 23456677788999999999999984
No 58
>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A.
Probab=40.76 E-value=1e+02 Score=19.97 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=33.7
Q ss_pred EEEeeCCCCEEEEEEEecccc----cceeEEEEEEEEEeeCCC--CceEEEEEE
Q 039477 10 IEAIDNENYITNYKVIEGNLL----ELYKSFSSTVKVTPKEND--DGSLVHWIF 57 (92)
Q Consensus 10 l~~~D~~~~~~~y~i~eg~~~----~~~~~~~~ti~v~p~~~g--~~~~v~W~~ 57 (92)
+.++++.++.+.-.-++.++. .+-++-.+.+-|...++. +-..|+|+-
T Consensus 70 f~a~~~~gk~f~ldTVd~~L~~g~lK~g~s~kG~avFaS~d~sVy~a~~VK~s~ 123 (124)
T PF14263_consen 70 FKAYSPDGKEFKLDTVDEELTSGTLKPGESVKGIAVFASDDDSVYQASLVKLSD 123 (124)
T ss_dssp EEEEETTS-EEEEEEE-GGGG-SEE-TT-EEEEEEEEEESSSGGGGEEEEEEES
T ss_pred hhhccccCCEEEecccchhhhhccccCCCceeEEEEEeeCChhhhccceEEeec
Confidence 568999999999999998775 344577888888655443 568899973
No 59
>TIGR02207 lipid_A_htrB lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. This model represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of E. coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis.
Probab=40.42 E-value=72 Score=22.86 Aligned_cols=38 Identities=5% Similarity=0.099 Sum_probs=26.5
Q ss_pred EEEEEEEEcCCCCCChhhHHHHHHHHHHHHHHHHhcCCC
Q 039477 54 HWIFEYEKLNEDVPDPTGKLQILIDVAKDIDAHLLSQQP 92 (92)
Q Consensus 54 ~W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~ 92 (92)
.+.+.+++.-.. .+.++..+.+..+.+.+|+++..+|.
T Consensus 245 ~~~i~~~~~~~~-~~~~~~~~~t~~~~~~lE~~Ir~~P~ 282 (303)
T TIGR02207 245 GYRLKIDPPLDD-FPGDDEIAAAARMNKIVEKMIMRAPE 282 (303)
T ss_pred eEEEEEeCCCCC-CCCCCHHHHHHHHHHHHHHHHHcCcH
Confidence 467777665332 22345566778999999999999984
No 60
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=39.00 E-value=1.2e+02 Score=20.37 Aligned_cols=45 Identities=13% Similarity=0.209 Sum_probs=27.6
Q ss_pred EEEEeeCC-CCceEEEEEEEEEEcCCCCCChhhHHH-----HHHHHHHHHHHHH
Q 039477 40 VKVTPKEN-DDGSLVHWIFEYEKLNEDVPDPTGKLQ-----ILIDVAKDIDAHL 87 (92)
Q Consensus 40 i~v~p~~~-g~~~~v~W~~~ye~~~~~~~~~~~~~~-----~~~~~~k~ie~~l 87 (92)
+-+.|.++ .++|.++|.+..++.+. . |.-+.+ .....++.|..|+
T Consensus 155 ~~i~p~~~~~~~t~~~~~~~~DpkG~-i--P~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 155 YFCSPLKGSPDKSFLVLYVQTDLRGM-I--PQSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred EEEEECCCCCCceEEEEEEEeccCCC-C--cHHHHHhhhhhhHHHHHHHHHHhc
Confidence 34555442 24799999999999864 2 333322 3346667776664
No 61
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=36.35 E-value=1.1e+02 Score=19.38 Aligned_cols=27 Identities=11% Similarity=0.206 Sum_probs=20.7
Q ss_pred EEEEEEEeeCCCCceEEEEEEEEEEcCC
Q 039477 37 SSTVKVTPKENDDGSLVHWIFEYEKLNE 64 (92)
Q Consensus 37 ~~ti~v~p~~~g~~~~v~W~~~ye~~~~ 64 (92)
.+.+.+.|.+++ +|.+.+....++.+.
T Consensus 141 ~~~~~i~~~~~~-~~~vt~~~~~D~~g~ 167 (193)
T cd00177 141 LSGWIIEPLDPG-KTKVTYVLQVDPKGS 167 (193)
T ss_pred ccEEEEEECCCC-CEEEEEEEeeCCCCC
Confidence 445667787555 899999999998864
No 62
>PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=35.23 E-value=1.1e+02 Score=22.06 Aligned_cols=38 Identities=5% Similarity=-0.073 Sum_probs=26.6
Q ss_pred EEEEEEEEcCCCCCChhhHHHHHHHHHHHHHHHHhcCCC
Q 039477 54 HWIFEYEKLNEDVPDPTGKLQILIDVAKDIDAHLLSQQP 92 (92)
Q Consensus 54 ~W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~ 92 (92)
.|.+.+++.-... +.++..+....+.+.+|+++..+|.
T Consensus 251 ~~~i~~~~~~~~~-~~~d~~~~t~~~n~~lE~~Ir~~Pe 288 (309)
T PRK06860 251 GYELIILPPEDSP-PLDDAEATAAWMNKVVEKCILMAPE 288 (309)
T ss_pred eEEEEEecCCCCC-CCCCHHHHHHHHHHHHHHHHHcCch
Confidence 4777777654332 2345556777889999999999984
No 63
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=34.79 E-value=1.3e+02 Score=21.78 Aligned_cols=46 Identities=7% Similarity=-0.026 Sum_probs=29.6
Q ss_pred ceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHHHHHHHHHHHHHHH
Q 039477 32 LYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKLQILIDVAKDIDAH 86 (92)
Q Consensus 32 ~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie~~ 86 (92)
.-..++.+++-++.++= .|.++|++.|...+ .+++...++++++.+
T Consensus 90 ~aNyikGtV~pvpgGg~-~g~as~Kl~F~~GG--------~ieFgq~~l~~~s~a 135 (261)
T KOG3294|consen 90 GANYIKGTVQPVPGGGW-EGEASFKLTFNEGG--------CIEFGQLLLQAASRA 135 (261)
T ss_pred ccceeeeeEeecCCCCc-cceeEEEEEecCCC--------chhHHHHHHHHHHHH
Confidence 34567888887776543 58889999998654 234445555555543
No 64
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=33.95 E-value=1.1e+02 Score=22.05 Aligned_cols=38 Identities=8% Similarity=0.076 Sum_probs=27.1
Q ss_pred EEEEEEEEcCCCCCChhhHHHHHHHHHHHHHHHHhcCCC
Q 039477 54 HWIFEYEKLNEDVPDPTGKLQILIDVAKDIDAHLLSQQP 92 (92)
Q Consensus 54 ~W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~ 92 (92)
.|.+.+++.-... +..+..+.+..+.+.+|+++..+|.
T Consensus 257 ~~~i~~~~~~~~~-~~~d~~~~t~~~~~~lE~~Ir~~Pe 294 (314)
T PRK08943 257 RLDIEIRPPMDDL-LSADDETIARRMNEEVEQFVGPHPE 294 (314)
T ss_pred eEEEEEecCCCCC-CCCCHHHHHHHHHHHHHHHHHcCcH
Confidence 5777777654322 2345567778999999999999984
No 65
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=33.20 E-value=1.3e+02 Score=21.08 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=35.8
Q ss_pred eeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcCC
Q 039477 13 IDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLNE 64 (92)
Q Consensus 13 ~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~ 64 (92)
-|..+..|.|.=++|--.. -...++|.+..+. .|.|+.+++|-+.+.
T Consensus 133 ~d~~~e~I~W~Sl~Ga~v~----NsG~VrF~~~pg~-~t~V~v~lsY~~Pgg 179 (217)
T COG5637 133 KDIPGERIQWESLPGARVE----NSGAVRFYDAPGD-STEVKVTLSYRPPGG 179 (217)
T ss_pred ccCCCcEEeeecCCCCcCC----CCccEEeeeCCCC-ceEEEEEEEecCCcc
Confidence 4678899999999984431 1356788777655 789999999998764
No 66
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=33.10 E-value=1.4e+02 Score=21.12 Aligned_cols=39 Identities=8% Similarity=0.057 Sum_probs=27.6
Q ss_pred EEEEEEEEEcCCCCCChhhHHHHHHHHHHHHHHHHhcCCC
Q 039477 53 VHWIFEYEKLNEDVPDPTGKLQILIDVAKDIDAHLLSQQP 92 (92)
Q Consensus 53 v~W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~ 92 (92)
..|.+.+++.-.... .++..+.+..+.+.+|+.+.++|.
T Consensus 246 ~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~lE~~Ir~~P~ 284 (295)
T PF03279_consen 246 SHYRIEIEPPLDFPS-SEDIEELTQRYNDRLEEWIREHPE 284 (295)
T ss_pred CEEEEEEeecccCCc-cchHHHHHHHHHHHHHHHHHcChH
Confidence 567777776543222 225567778999999999999984
No 67
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=31.82 E-value=2e+02 Score=20.74 Aligned_cols=39 Identities=5% Similarity=-0.008 Sum_probs=26.5
Q ss_pred EEEEEEEEcCCCCC---ChhhHHHHHHHHHHHHHHHHhcCCC
Q 039477 54 HWIFEYEKLNEDVP---DPTGKLQILIDVAKDIDAHLLSQQP 92 (92)
Q Consensus 54 ~W~~~ye~~~~~~~---~~~~~~~~~~~~~k~ie~~l~~~~~ 92 (92)
.+.+.+++.-+... ..++..+.+..+.+.+|+.+..+|.
T Consensus 257 ~y~i~~~~~~~~~~~~~~~~d~~~~t~~~n~~lE~~Ir~~Pe 298 (308)
T PRK06553 257 RFRLELTERVELPRDADGQIDVQATMQALTDVVEGWVREYPG 298 (308)
T ss_pred eEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHcChH
Confidence 47777765533211 1234566777899999999999984
No 68
>PRK08905 lipid A biosynthesis lauroyl acyltransferase; Validated
Probab=31.36 E-value=1.1e+02 Score=21.87 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=25.7
Q ss_pred EEEEEEEEcCCCCCChhhHHHHHHHHHHHHHHHHhcCCC
Q 039477 54 HWIFEYEKLNEDVPDPTGKLQILIDVAKDIDAHLLSQQP 92 (92)
Q Consensus 54 ~W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~ 92 (92)
.+.+.+.+.... ..++..+....+.+.+|+++.++|.
T Consensus 227 ~y~~~~~~~~~~--~~~~~~~~t~~~~~~lE~~Ir~~Pe 263 (289)
T PRK08905 227 GYRLHLRPVQEP--LPGDKAADAAVINAEIERLIRRFPT 263 (289)
T ss_pred cEEEEEecCCCC--CCCCHHHHHHHHHHHHHHHHHcCcH
Confidence 355666654332 2345567778999999999999984
No 69
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=31.34 E-value=80 Score=22.18 Aligned_cols=40 Identities=5% Similarity=-0.049 Sum_probs=26.3
Q ss_pred ceEEEEEEEEEEcCCCCCC-hhhH--HHHHHHHHHHHHHHHhcC
Q 039477 50 GSLVHWIFEYEKLNEDVPD-PTGK--LQILIDVAKDIDAHLLSQ 90 (92)
Q Consensus 50 ~~~v~W~~~ye~~~~~~~~-~~~~--~~~~~~~~k~ie~~l~~~ 90 (92)
+|.+.+....+|.+.- |. .... +..+-++++.+-+|++.+
T Consensus 185 ~~~ity~~~~dPgG~i-P~wvvn~~~k~~~P~~l~~~~~~~~~~ 227 (235)
T cd08872 185 LCKITYVANVNPGGWA-PASVLRAVYKREYPKFLKRFTSYVQEK 227 (235)
T ss_pred eEEEEEEEEeCCCCCc-cHHHHHHHHHhhchHHHHHHHHHHHHh
Confidence 7999999888877642 22 1111 223447889999998753
No 70
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=30.83 E-value=1.7e+02 Score=19.83 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=27.6
Q ss_pred EEEEEeeCCCCceEEEEEEEEEEcCCCCCChhhHH-----HHHHHHHHHHHHHHh
Q 039477 39 TVKVTPKENDDGSLVHWIFEYEKLNEDVPDPTGKL-----QILIDVAKDIDAHLL 88 (92)
Q Consensus 39 ti~v~p~~~g~~~~v~W~~~ye~~~~~~~~~~~~~-----~~~~~~~k~ie~~l~ 88 (92)
.++..|.+++ +|.++|.+..++.+. .| ..+. +.....++.+..++.
T Consensus 156 ~~~~~~~~~~-~t~v~~~~~~DpkG~-iP--~~lvn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 156 FCEPVPGEPD-KTQLVSFFQTDLSGY-LP--QTVVDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred EEEECCCCCC-ceEEEEEEEeccCCC-cC--HHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3444443444 899999999998753 32 2332 233466677776663
No 71
>PRK08734 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=30.50 E-value=1.3e+02 Score=21.71 Aligned_cols=38 Identities=8% Similarity=0.115 Sum_probs=25.8
Q ss_pred EEEEEEEEcCCCCCChhhHHHHHHHHHHHHHHHHhcCCC
Q 039477 54 HWIFEYEKLNEDVPDPTGKLQILIDVAKDIDAHLLSQQP 92 (92)
Q Consensus 54 ~W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~ 92 (92)
.+++.+++..... +.++..+.+..+.+.+|+++..+|.
T Consensus 239 ~y~~~~~~~~~~~-~~~~~~~~~~~~n~~lE~~Ir~~Pe 276 (305)
T PRK08734 239 EFALHVQPADPAV-ADPDPLRAATALNAGIERIARRDPA 276 (305)
T ss_pred cEEEEEecCCCCC-CCCCHHHHHHHHHHHHHHHHHcCcH
Confidence 3566666543222 2345566778999999999999984
No 72
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=29.97 E-value=1.6e+02 Score=19.09 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=34.3
Q ss_pred EEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEc
Q 039477 9 IIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKL 62 (92)
Q Consensus 9 rl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~ 62 (92)
+-...++..++.++++.=.+. --+..+++.+.|.+ ++|.+.++++....
T Consensus 80 ~w~~~~~g~~~g~~~~~~~G~---P~~~~G~~~L~~~~--~gt~~~~~g~v~v~ 128 (159)
T PF10698_consen 80 TWTPLDDGRRTGTFTVSIPGA---PVSISGTMRLRPDG--GGTRLTVEGEVKVK 128 (159)
T ss_pred EEecCCCCeEEEEEEEEecCc---eEEEEEEEEEecCC--CCEEEEEEEEEEEE
Confidence 333346677777777654433 23588999999843 37999999998865
No 73
>PRK05646 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=29.88 E-value=1.3e+02 Score=21.68 Aligned_cols=38 Identities=5% Similarity=-0.075 Sum_probs=25.4
Q ss_pred EEEEEEEEcCCCCCChhhHHHHHHHHHHHHHHHHhcCCC
Q 039477 54 HWIFEYEKLNEDVPDPTGKLQILIDVAKDIDAHLLSQQP 92 (92)
Q Consensus 54 ~W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~ 92 (92)
.|.+.+++.-.. ++.++..+....+.+.+|+++..+|.
T Consensus 249 ~~~i~~~~~~~~-~~~~~~~~~~~~~~~~lE~~Ir~~P~ 286 (310)
T PRK05646 249 GYRLVIHPPLED-FPGESEEADCLRINQWVERVVRECPE 286 (310)
T ss_pred eEEEEEeCCCcC-CCCCCHHHHHHHHHHHHHHHHHcCcH
Confidence 477777754332 22234444567899999999999984
No 74
>PF11192 DUF2977: Protein of unknown function (DUF2977); InterPro: IPR021358 This entry is represented by Bacteriophage 96, Orf38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=28.38 E-value=78 Score=18.01 Aligned_cols=16 Identities=38% Similarity=0.625 Sum_probs=14.2
Q ss_pred EeeCCCCEEEEEEEec
Q 039477 12 AIDNENYITNYKVIEG 27 (92)
Q Consensus 12 ~~D~~~~~~~y~i~eg 27 (92)
.+|+.|..++|.+++|
T Consensus 4 ~ine~n~I~gya~iG~ 19 (62)
T PF11192_consen 4 KINEKNEIIGYATIGG 19 (62)
T ss_pred EecCCCeEEEEEEEcC
Confidence 3889999999999887
No 75
>PF02087 Nitrophorin: Nitrophorin; InterPro: IPR002351 Nitrophorins are haemoproteins found in saliva of blood-feeding insects [, ]. Saliva of the blood-sucking bug Rhodnius prolixus (Triatomid bug) contains four homologous nitrophorins, designated NP1 to NP4 in order of their relative abundance in the glands []. As isolated, nitrophorins contain nitric oxide (NO) ligated to the ferric (FeIII) haem iron. Histamine, which is released by the host in response to tissue damage, is another nitrophorin ligand. Nitrophorins transport NO to the feeding site. Dilution, binding of histamine and increase in pH (from pH ~5 in salivary gland to pH ~7.4 in the host tissue) facilitate the release of NO into the tissue where it induces vasodilatation. The salivary nitrophorin from the hemipteran Cimex lectularius (Bed bug) has no sequence similarity to R. prolixus nitrophorins. It is suggested that the two classes of insect nitrophorins have arisen as a product of the convergent evolution []. 3-D structures of several nitrophorin complexes are known []. The nitrophorin structures reveal lipocalin-like eight-stranded beta-barrel, three alpha-helices and two disulphide bonds, with haem inserted into one end of the barrel. Members of the lipocalin family are known to bind a variety of small hydrophobic ligands, including biliverdin, in a similar fashion (see [] for review). The haem iron is ligated to His59. The position of His59 is restrained through water-mediated hydrogen bond to the carboxylate of Asp70. The His59-Fe bond is bent ~15 degrees out of the imidazole plane. Asp70 forms an unusual hydrogen bond with one of the haem propionates, suggesting the residue has an altered pKa. In NP1-histamine structure, the planes of His59 and histamine imidazole rings lie in an arrangement almost identical to that found in oxidised cytochrome b5. This entry represents the nitrophorin structural domain.; GO: 0051381 histamine binding, 0070026 nitric oxide binding; PDB: 1SXX_A 2OFM_X 1X8Q_A 3TGA_A 1SXU_A 1IKJ_A 1YWD_A 1X8N_A 3FLL_A 1X8O_A ....
Probab=28.33 E-value=2e+02 Score=19.74 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=23.5
Q ss_pred eeEEEEEEEeeCCCCEEEEEEEecccc
Q 039477 4 QIAKEIIEAIDNENYITNYKVIEGNLL 30 (92)
Q Consensus 4 ~~~kErl~~~D~~~~~~~y~i~eg~~~ 30 (92)
..+||-+--+++.+..+.|.+-++.+-
T Consensus 48 GkvKE~~~~ynp~~~~~~Y~is~~~l~ 74 (178)
T PF02087_consen 48 GKVKEALYHYNPKNKTYFYDISESKLE 74 (178)
T ss_dssp TEEEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred CceEEEEEEecCCCceEEEEeeeeecc
Confidence 368999999999999999999887664
No 76
>cd07984 LPLAT_LABLAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.
Probab=27.77 E-value=1.6e+02 Score=19.01 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=25.0
Q ss_pred EEEEEEEEcCCCCCChhhHHHHHHHHHHHHHHHHhcCCC
Q 039477 54 HWIFEYEKLNEDVPDPTGKLQILIDVAKDIDAHLLSQQP 92 (92)
Q Consensus 54 ~W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~ 92 (92)
++++.|.+.-.. ++-....+.+..+.+.+|+.+..+|.
T Consensus 145 ~~~i~~~~~i~~-~~~~~~~~~~~~~~~~lE~~i~~~P~ 182 (192)
T cd07984 145 GYRIEFEPPLEN-PPSEDVEEDTQRLNDALEAAIREHPE 182 (192)
T ss_pred CEEEEEeCCCCC-CCCCCHHHHHHHHHHHHHHHHHhCch
Confidence 466666543221 11234566777999999999999884
No 77
>KOG1612 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp42 [Translation, ribosomal structure and biogenesis]
Probab=27.54 E-value=73 Score=23.39 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=21.1
Q ss_pred cceeEEEEEEEEEeeCCCCceEEEEEE
Q 039477 31 ELYKSFSSTVKVTPKENDDGSLVHWIF 57 (92)
Q Consensus 31 ~~~~~~~~ti~v~p~~~g~~~~v~W~~ 57 (92)
+.|.......-|.|..+| .|+|+|.-
T Consensus 29 ~~~Rpi~vetdVlp~tNG-SaRVk~g~ 54 (288)
T KOG1612|consen 29 HQFRPIEVETDVLPGTNG-SARVKLGD 54 (288)
T ss_pred cccceEEEEeccccCCCC-cEEEEecC
Confidence 567777788888898888 88988865
No 78
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=27.40 E-value=2e+02 Score=19.35 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=23.6
Q ss_pred eEEEEEEEEEeeCCCCceEEEEEEEEEEcCC
Q 039477 34 KSFSSTVKVTPKENDDGSLVHWIFEYEKLNE 64 (92)
Q Consensus 34 ~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~~ 64 (92)
..+.+-+.++|.+++ +|.++|.+..++.+.
T Consensus 141 ~~~~~g~~i~p~~~~-~t~vty~~~~Dp~G~ 170 (197)
T cd08869 141 VVLASRYLIEPCGSG-KSRVTHICRVDLRGR 170 (197)
T ss_pred EEEeeeEEEEECCCC-CeEEEEEEEECCCCC
Confidence 445566778887766 899999999998764
No 79
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=27.27 E-value=44 Score=24.13 Aligned_cols=15 Identities=20% Similarity=0.228 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhcCCC
Q 039477 78 DVAKDIDAHLLSQQP 92 (92)
Q Consensus 78 ~~~k~ie~~l~~~~~ 92 (92)
++.++||-||.+||.
T Consensus 221 ~LYrAID~YLk~Hp~ 235 (258)
T PF03000_consen 221 GLYRAIDIYLKAHPG 235 (258)
T ss_pred hHHHHHHHHHHHccc
Confidence 577888888888873
No 80
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=27.04 E-value=1e+02 Score=17.27 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=15.9
Q ss_pred eEEEEEEEeeCCCCEEEEEEE
Q 039477 5 IAKEIIEAIDNENYITNYKVI 25 (92)
Q Consensus 5 ~~kErl~~~D~~~~~~~y~i~ 25 (92)
.++=++..+|.+++.+..++.
T Consensus 52 ~v~~kV~~id~~~~~i~Ls~k 72 (73)
T cd05703 52 ALKAKVVGVDKEHKLLRLSAR 72 (73)
T ss_pred EEEEEEEEEeCCCCEEEEEec
Confidence 345577889999999887763
No 81
>PRK07920 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=26.86 E-value=1.8e+02 Score=20.84 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=25.9
Q ss_pred EEEEEEEcCCCCCChhhHHHHHHHHHHHHHHHHhcCCC
Q 039477 55 WIFEYEKLNEDVPDPTGKLQILIDVAKDIDAHLLSQQP 92 (92)
Q Consensus 55 W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~ 92 (92)
+.+.+.+.-.. ++.++..+.+..+.+.+|+++.++|.
T Consensus 236 y~v~~~~~~~~-~~~~~~~~~t~~~~~~lE~~Ir~~Pe 272 (298)
T PRK07920 236 WGFRVHPPLDV-PSAEDVAAMTQALADAFAANIAAHPE 272 (298)
T ss_pred EEEEEeCCCCC-CchhHHHHHHHHHHHHHHHHHHhChH
Confidence 66677654332 22355566778999999999999884
No 82
>PF08868 YugN: YugN-like family; InterPro: IPR014967 This entry contains proteins related to Bacillus subtilis YugN, they are functionally uncharacterised. ; PDB: 2R5X_A 2PWW_A.
Probab=26.50 E-value=73 Score=20.79 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=18.5
Q ss_pred EcCCCCCChhhHHHHHHHHHHHHHHHHh
Q 039477 61 KLNEDVPDPTGKLQILIDVAKDIDAHLL 88 (92)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 88 (92)
|.+.+..-|+.+++.+..+++.||..|.
T Consensus 105 P~d~D~~~p~~~v~~~~~~l~ele~~L~ 132 (132)
T PF08868_consen 105 PVDKDAEFPEKWVDKGEELLKELEDELK 132 (132)
T ss_dssp ---T-B-EEHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcCCHHHHHHHHHHHHHHHHhhC
Confidence 3333333377889999999999999873
No 83
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Probab=26.11 E-value=1.3e+02 Score=16.98 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=20.5
Q ss_pred eeEEEEEEEeeCC---CCEEEEEEEeccc
Q 039477 4 QIAKEIIEAIDNE---NYITNYKVIEGNL 29 (92)
Q Consensus 4 ~~~kErl~~~D~~---~~~~~y~i~eg~~ 29 (92)
...--++.+.|.+ +..+.|++++|+.
T Consensus 12 g~~v~~v~a~D~D~~~n~~i~y~i~~~~~ 40 (93)
T PF00028_consen 12 GTVVGQVTATDPDSGPNSQITYSILGGNP 40 (93)
T ss_dssp SSEEEEEEEEESSTSTTSSEEEEEEETTS
T ss_pred CCEEEEEEEEeCCCCCCceEEEEEecCcc
Confidence 3445678888886 8899999999983
No 84
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=25.54 E-value=2.2e+02 Score=19.28 Aligned_cols=54 Identities=11% Similarity=0.118 Sum_probs=30.8
Q ss_pred ceeEEEEEEEEEeeC--CCCceEEEEEEEEEEcCCCCCChhhHHH-----HHHHHHHHHHHHHh
Q 039477 32 LYKSFSSTVKVTPKE--NDDGSLVHWIFEYEKLNEDVPDPTGKLQ-----ILIDVAKDIDAHLL 88 (92)
Q Consensus 32 ~~~~~~~ti~v~p~~--~g~~~~v~W~~~ye~~~~~~~~~~~~~~-----~~~~~~k~ie~~l~ 88 (92)
.+.+|.+.+.+.|.+ +++||.+.++..-++. +.. |.-+.+ ..-++++.|..+++
T Consensus 145 Rv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPg-G~I--P~~lvN~~~~~~~~~~l~~l~~a~~ 205 (207)
T cd08911 145 RVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPG-VNI--PSYITSWVAMSGMPDFLERLRNAAL 205 (207)
T ss_pred EEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCC-Ccc--CHHHHHHHHHhhccHHHHHHHHHHh
Confidence 467788888888874 2237888765554333 333 222322 22366677666554
No 85
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=23.64 E-value=2e+02 Score=20.41 Aligned_cols=24 Identities=8% Similarity=0.028 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCC
Q 039477 69 PTGKLQILIDVAKDIDAHLLSQQP 92 (92)
Q Consensus 69 ~~~~~~~~~~~~k~ie~~l~~~~~ 92 (92)
.++..+.+..+.+.+|+++.++|.
T Consensus 256 ~~~~~~~~~~~~~~lE~~Ir~~P~ 279 (298)
T PRK08419 256 EADILEATQAQASACEEMIRKKPD 279 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCch
Confidence 345566777999999999999984
No 86
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=23.50 E-value=2.1e+02 Score=22.64 Aligned_cols=78 Identities=22% Similarity=0.476 Sum_probs=44.6
Q ss_pred ceeEEEEEEEeeCCCCEEEEEEEecccc-cceeEE--EEEEEE-EeeC-------CCCceEEEEEEEEEEcCCCCCChhh
Q 039477 3 PQIAKEIIEAIDNENYITNYKVIEGNLL-ELYKSF--SSTVKV-TPKE-------NDDGSLVHWIFEYEKLNEDVPDPTG 71 (92)
Q Consensus 3 ~~~~kErl~~~D~~~~~~~y~i~eg~~~-~~~~~~--~~ti~v-~p~~-------~g~~~~v~W~~~ye~~~~~~~~~~~ 71 (92)
-+.+||||+ +|.. .++=++|+-++ .....+ .+++.+ .|.. +| ..++.|-+.+...++.-+.+..
T Consensus 247 ~~~vkekI~-ld~~---~S~LLLDkrll~~~~~~~dd~gti~~~~~~~~~~~~~~~g-D~ilsWlf~~~s~~~~l~sw~~ 321 (466)
T PF04780_consen 247 GSRVKEKID-LDSD---FSCLLLDKRLLKGELDPFDDEGTINVFDPNVHYADVQPQG-DDILSWLFDGPSIDEQLPSWIR 321 (466)
T ss_pred ccccceeee-cCCc---cceeeechhhhccCCCccCcCCceeccCCCcccccCCCCC-CceeEEeccCCcccccccchHH
Confidence 356899987 5543 34777777665 322222 233332 2221 23 6999999998888776555541
Q ss_pred H----HHHHHHHHHHHHH
Q 039477 72 K----LQILIDVAKDIDA 85 (92)
Q Consensus 72 ~----~~~~~~~~k~ie~ 85 (92)
. .+..+.++++++.
T Consensus 322 ~~~~~~~~~~avl~~v~~ 339 (466)
T PF04780_consen 322 MREHNLDIWVAVLRAVEK 339 (466)
T ss_pred HHHHhhhHHHHHHHHHHH
Confidence 1 3444555555553
No 87
>PF07474 G2F: G2F domain; InterPro: IPR006605 Basement membranes are sheet-like extracellular matrices found at the basal surfaces of epithelia and condensed mesenchyma. By preventing cell mixing and providing a cell-adhesive substrate, they play crucial roles in tissue development and function. Basement menbranes are composed of an evolutionarily ancient set of large glycoproteins, which includes members of the laminin family, collagen IV, perlecan and nidogen/entactin. Nidogen/entactin is an important basement membrane component, which promotes cell attachment, neutrophil chemotaxis, trophoblast outgrowth, and angiogenesis. It consists of three globular regions, G1-G3. G1 and G2 are connected by a thread-like structure, whereas that between G2 and G3 is rod-like [, ]. The nidogen G2 region binds to collagen IV and perlecan. The nidogen G2 structure is composed of two domains, an N-terminal EGF-like domain and a much larger beta-barrel domain of ~230 residues. The nidogen G2 beta-barrel consists of an 11-stranded beta-barrel of complex topology, the interior of which is traversed by the hydrophobic, predominantly alpha helical segment connecting strands C and D. The N-terminal half of the barrel comprises two beta-meanders (strands A-C and D-F) linked by the buried alpha-helical segment. The polypeptide chain then crosses the bottom of the barrel and forms a five-stranded Greek key motif in the C- terminal half of the domain. Helix alpha3 caps the top of the barrel and forms the interface to the EGF-like domain. The nidogen G2 beta-barrel domain has unexpected structural similarity to green fluorescent protein, suggesting that they derive from a common ancestor. A large surface patch on the barrel surface is strikingly conserved in all metazoan nidogens. Site-directed mutagenesis demonstrates that the conserved residues in the conserved patch are involved in the binding of perlecan, and possibly also of collagen IV [].; PDB: 1GL4_A 1H4U_A.
Probab=22.64 E-value=1.5e+02 Score=20.56 Aligned_cols=41 Identities=17% Similarity=0.299 Sum_probs=24.0
Q ss_pred CCceeEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEE
Q 039477 1 GSPQIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVT 43 (92)
Q Consensus 1 g~~~~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~ 43 (92)
|+.-.++++..-+|..+.-..-..++|.+ |.-...+++++.
T Consensus 99 Ge~l~itq~~~GlD~~~~L~~d~~i~G~v--P~i~~~a~v~i~ 139 (192)
T PF07474_consen 99 GERLTITQTARGLDSDGYLLLDTVISGQV--PQIPAGADVHIQ 139 (192)
T ss_dssp S--EEEEEEEEEE-TTS-EEEEEEEEEEE------TT-EEE--
T ss_pred CCEEEEEEEecccCCCCcEEEEEEEeccC--CCCCCCCeEEeC
Confidence 45567899999999999988889999987 433333444443
No 88
>smart00243 GAS2 Growth-Arrest-Specific Protein 2 Domain. GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain
Probab=22.34 E-value=52 Score=19.35 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhcCCC
Q 039477 78 DVAKDIDAHLLSQQP 92 (92)
Q Consensus 78 ~~~k~ie~~l~~~~~ 92 (92)
+.|..+++||.+|.|
T Consensus 54 GGW~tL~~fL~khDP 68 (73)
T smart00243 54 GGWETLDEYLLKHDP 68 (73)
T ss_pred CcHHHHHHHHHhCCC
Confidence 457788888888765
No 89
>PRK08025 lipid A biosynthesis palmitoleoyl acyltransferase; Reviewed
Probab=21.88 E-value=2.2e+02 Score=20.37 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=24.1
Q ss_pred EEEEEEEcCCCCCChhhHHHHHHHHHHHHHHHHhcCCC
Q 039477 55 WIFEYEKLNEDVPDPTGKLQILIDVAKDIDAHLLSQQP 92 (92)
Q Consensus 55 W~~~ye~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~ 92 (92)
+.+.+.+.... .+++.......+.+.+|+.+..+|.
T Consensus 250 ~~i~~~~~~~~--~~~~~~~~~~~~n~~lE~~Ir~~Pe 285 (305)
T PRK08025 250 YRLFITPEMEG--YPTDENQAAAYMNKIIEKEIMRAPE 285 (305)
T ss_pred EEEEEeCCccC--CCCCHHHHHHHHHHHHHHHHHcCcH
Confidence 56666654332 2255555666788999999999884
No 90
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=21.27 E-value=1.5e+02 Score=27.00 Aligned_cols=56 Identities=18% Similarity=0.304 Sum_probs=38.3
Q ss_pred eeEEEEEEEeeCCCCEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEEEcC
Q 039477 4 QIAKEIIEAIDNENYITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYEKLN 63 (92)
Q Consensus 4 ~~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye~~~ 63 (92)
...+||++ +|..+|..+-.+-+|-. +...|..-.-+.|-.-. .-..+|.++|+.-+
T Consensus 1038 G~~~er~~-yD~sgRl~er~~adgkt--wsy~yl~ks~~lpl~s~-~~qr~yifqYD~~d 1093 (1899)
T KOG4659|consen 1038 GSWSERLT-YDNSGRLTERAFADGKT--WSYTYLEKSMVLPLHSQ-HDQRQYIFQYDNYD 1093 (1899)
T ss_pred eeeeeeee-eccCCceEEEEecCCce--eeeeehhhhccccceec-cccceeEEeecccc
Confidence 45689987 99999999888888877 55556554444453211 23568999987553
No 91
>cd05696 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 4 (hs4). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=21.15 E-value=1.2e+02 Score=16.75 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=13.2
Q ss_pred EEEEEEEeeCCCCEEEEE
Q 039477 6 AKEIIEAIDNENYITNYK 23 (92)
Q Consensus 6 ~kErl~~~D~~~~~~~y~ 23 (92)
++=|+..+|..++.++.+
T Consensus 53 v~~kV~~id~~~~~i~lS 70 (71)
T cd05696 53 HKARIIGYSPMDGLLQLS 70 (71)
T ss_pred EEEEEEEEeCCCCEEEEe
Confidence 455777888888887765
No 92
>PRK06946 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=20.82 E-value=2.5e+02 Score=20.04 Aligned_cols=23 Identities=0% Similarity=-0.198 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCC
Q 039477 70 TGKLQILIDVAKDIDAHLLSQQP 92 (92)
Q Consensus 70 ~~~~~~~~~~~k~ie~~l~~~~~ 92 (92)
++..+.+..+.+.+|+++.++|.
T Consensus 251 ~~~~~~t~~~n~~lE~~Ir~~Pe 273 (293)
T PRK06946 251 GDDDLDARRMNAFLEEQIRLMPE 273 (293)
T ss_pred CCHHHHHHHHHHHHHHHHHcCcH
Confidence 34445677999999999999984
No 93
>cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=20.25 E-value=2.6e+02 Score=18.14 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=25.2
Q ss_pred CEEEEEEEecccccceeEEEEEEEEEeeCCCCceEEEEEEEEE
Q 039477 18 YITNYKVIEGNLLELYKSFSSTVKVTPKENDDGSLVHWIFEYE 60 (92)
Q Consensus 18 ~~~~y~i~eg~~~~~~~~~~~ti~v~p~~~g~~~~v~W~~~ye 60 (92)
..+.|.+.=+-++.....+...+++.|.+-+ .|.+.|..-+.
T Consensus 82 ~~~~~~iFPN~~i~~~~~~~~~~~~~P~~~~-~t~~~~~~~~~ 123 (190)
T cd08885 82 RLVLFAIFPTHLLALTPDYVWWLSLLPEGAG-RVRVRWGVLVA 123 (190)
T ss_pred ceEEEEECCcEEEEecCCeEEEEEEEecCCC-eEEEEEEEEEc
Confidence 3444444332222334456678889998766 89988876544
Done!