BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039479
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SAL|A Chain A, Crystal Structure Of Influenza A Virus Neuraminidase N5
pdb|3SAL|B Chain B, Crystal Structure Of Influenza A Virus Neuraminidase N5
pdb|3SAN|A Chain A, Crystal Structure Of Influenza A Virus Neuraminidase N5
Complexed With Zanamivir
pdb|3SAN|B Chain B, Crystal Structure Of Influenza A Virus Neuraminidase N5
Complexed With Zanamivir
pdb|3TI8|A Chain A, Crystal Structure Of Influenza A Virus Neuraminidase N5
Complexed With Laninamivir
pdb|3TI8|B Chain B, Crystal Structure Of Influenza A Virus Neuraminidase N5
Complexed With Laninamivir
Length = 395
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 72 IYVYEEGEPPMFHDGP--CKSIYSTEGRFIHEMERSNTYKTKDPEKALV 118
++V E P GP C++ + T+G +++ +NT K + P +AL+
Sbjct: 33 VFVIRE---PFVACGPTECRTFFLTQGALLNDKHSNNTVKDRSPYRALM 78
>pdb|2GER|A Chain A, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|B Chain B, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|C Chain C, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|D Chain D, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|E Chain E, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
Length = 321
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 138 HEINAIGHSIVDYISIISHKYPFWNRSLGAD----HFMLSCHDWVRNSS 182
H + HS V ++++ H PF +GAD H ++SC V SS
Sbjct: 57 HNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISS 105
>pdb|2IZZ|A Chain A, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|B Chain B, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|C Chain C, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|D Chain D, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|E Chain E, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
Length = 322
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 138 HEINAIGHSIVDYISIISHKYPFWNRSLGAD----HFMLSCHDWVRNSS 182
H + HS V ++++ H PF +GAD H ++SC V SS
Sbjct: 77 HNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISS 125
>pdb|2GR9|A Chain A, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|B Chain B, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|C Chain C, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|D Chain D, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|E Chain E, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GRA|A Chain A, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|B Chain B, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|C Chain C, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|D Chain D, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|E Chain E, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
Length = 277
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 138 HEINAIGHSIVDYISIISHKYPFWNRSLGAD----HFMLSCHDWVRNSS 182
H + HS V ++++ H PF +GAD H ++SC V SS
Sbjct: 57 HNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISS 105
>pdb|3K1D|A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym:
1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase
From Mycob Tuberculosis H37rv
Length = 722
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 36 NLTSVHQDPDYVPRGPIYRNANAFHRSYLLMEKLFKIYVYEEGEPPMFHDGPCKSIYSTE 95
N+ +H DYV R P+YR+ + ++ ++ + YV P+ HD + +
Sbjct: 479 NMGWMHDTLDYVSRDPVYRSYHHHEMTFSMLYAFSENYVL-----PLSHD----EVVHGK 529
Query: 96 GRFIHEMERSNTYKTKDPEKALVY 119
G M +N K L Y
Sbjct: 530 GTLWGRMPGNNHVKAAGLRSLLAY 553
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,578,674
Number of Sequences: 62578
Number of extensions: 213798
Number of successful extensions: 364
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 362
Number of HSP's gapped (non-prelim): 5
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)