Query 039479
Match_columns 182
No_of_seqs 205 out of 458
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 17:15:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039479.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039479hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k1f_A Breakpoint cluster regi 36.3 27 0.00092 23.8 2.8 25 9-33 23-47 (72)
2 4dx8_H KREV interaction trappe 35.6 13 0.00043 30.1 1.2 26 112-137 109-134 (203)
3 1ejp_A Syndecan-4; symmetric-p 35.2 23 0.0008 20.0 2.0 18 75-92 10-27 (28)
4 3qbt_B Inositol polyphosphate 22.6 22 0.00074 26.6 0.4 17 163-179 123-139 (140)
5 2kw6_A Cyclin-dependent kinase 20.1 65 0.0022 21.7 2.3 23 11-33 35-57 (65)
6 3aq2_A 6B protein; miRNA machi 17.2 82 0.0028 25.5 2.7 48 13-77 19-71 (207)
7 2m1l_A Cyclin-dependent kinase 17.1 90 0.0031 21.2 2.5 23 11-33 39-61 (69)
8 2luv_A Integrin alpha-X; myris 16.1 46 0.0016 19.6 0.0 13 57-69 3-15 (35)
9 2lke_A Integrin alpha-M; myris 11.8 79 0.0027 17.3 0.9 12 57-68 3-14 (26)
10 4fus_A RTX toxins and related 11.4 2.6E+02 0.0088 26.6 4.7 54 74-158 423-476 (695)
No 1
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=36.26 E-value=27 Score=23.82 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.2
Q ss_pred hccchhhhhHHHHHHHHHHHHHhhh
Q 039479 9 SQMNQFNWVEASLVRARSSIREAAL 33 (182)
Q Consensus 9 ~~~~~~~~~~~~l~~ar~~i~~a~~ 33 (182)
....+++-+|++|.+.|++|++--.
T Consensus 23 m~l~~vgdiEqeLe~Ck~sIrrLE~ 47 (72)
T 1k1f_A 23 MELRSVGDIEQELERAKASIRRLEQ 47 (72)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999998654
No 2
>4dx8_H KREV interaction trapped protein 1; protein-protien complex, PTB domain, nudix fold, protein-Pro interaction, membrane, nucleus, protein binding; 2.54A {Homo sapiens}
Probab=35.59 E-value=13 Score=30.14 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=13.0
Q ss_pred CcCCcceEEEceeeeeeeeccccCCC
Q 039479 112 DPEKALVYFLPFSVVMMVEHLYVPGA 137 (182)
Q Consensus 112 DP~eAdlFfvPf~~~~~~~~ly~p~~ 137 (182)
-++||-||.||..+.--..+.|.|++
T Consensus 109 ~g~eA~LfvVP~~vKdntk~~~~pg~ 134 (203)
T 4dx8_H 109 MGREASLFIVPSVVKDNTKYTYTPGC 134 (203)
T ss_dssp SSCEEEEEEEECCC-----------C
T ss_pred CCcceeEEEEeeeecCCCCCCCCCCC
Confidence 47899999999998876666776654
No 3
>1ejp_A Syndecan-4; symmetric-parallel-interwinded dimer, signaling protein; NMR {Synthetic} SCOP: j.80.1.1 PDB: 1ejq_A
Probab=35.18 E-value=23 Score=20.02 Aligned_cols=18 Identities=28% Similarity=0.899 Sum_probs=10.7
Q ss_pred ecCCCCCCCCCCCCCCch
Q 039479 75 YEEGEPPMFHDGPCKSIY 92 (182)
Q Consensus 75 Y~lg~pp~~h~~~~~~~Y 92 (182)
|.|++||.++..+.+..|
T Consensus 10 Y~Lde~p~Y~k~~~~EfY 27 (28)
T 1ejp_A 10 YDLGKKPIYKKAPTNEFY 27 (28)
T ss_dssp CCCCSCCCCCCCCCCCSC
T ss_pred cccCCCcccccCCccccc
Confidence 667777777655544333
No 4
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=22.55 E-value=22 Score=26.56 Aligned_cols=17 Identities=18% Similarity=0.342 Sum_probs=14.4
Q ss_pred cCCCCCeEEEcCCCCCC
Q 039479 163 RSLGADHFMLSCHDWVR 179 (182)
Q Consensus 163 Rs~GaDHf~v~cHD~g~ 179 (182)
=.+|+|||+.....|-|
T Consensus 123 Ve~G~d~fI~v~g~~~p 139 (140)
T 3qbt_B 123 LDRGKDYFLTISGNYLP 139 (140)
T ss_dssp ETTSCEEEEEEEEEECC
T ss_pred eecCCcEEEEEeccccC
Confidence 35899999999888876
No 5
>2kw6_A Cyclin-dependent kinase 2-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=20.08 E-value=65 Score=21.66 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=19.9
Q ss_pred cchhhhhHHHHHHHHHHHHHhhh
Q 039479 11 MNQFNWVEASLVRARSSIREAAL 33 (182)
Q Consensus 11 ~~~~~~~~~~l~~ar~~i~~a~~ 33 (182)
.+..+|+..++++||..+|+-..
T Consensus 35 k~~~ERLkR~I~hAr~LVrECl~ 57 (65)
T 2kw6_A 35 KSAMERLKRGIIHARGLVRECLA 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999998765
No 6
>3aq2_A 6B protein; miRNA machineries, toxin, ADP-ribosylation fold; 1.65A {Agrobacterium vitis} PDB: 3aq3_A
Probab=17.18 E-value=82 Score=25.49 Aligned_cols=48 Identities=25% Similarity=0.463 Sum_probs=31.0
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhccCccCCCCCCCCCCCCcccChh-----hhhhchHhhhcCceEEEecC
Q 039479 13 QFNWVEASLVRARSSIREAALVRNLTSVHQDPDYVPRGPIYRNAN-----AFHRSYLLMEKLFKIYVYEE 77 (182)
Q Consensus 13 ~~~~~~~~l~~ar~~i~~a~~~~~~~~~~~~~~~~~~~~~y~n~~-----~f~~sy~~m~~~lKIYVY~l 77 (182)
+...++.+|.+||..-+.-.-. -+|.+++ .|-..|......| +|||=.
T Consensus 19 ~~~e~~~~LEqAr~Df~~~L~~----------------~~yf~~s~~~~~e~Ddeyi~t~q~L-lYvYld 71 (207)
T 3aq2_A 19 RVSELSQHLRQARTDFRSTLSQ----------------LVYFNRSVVNPNEYDDEYLLSDQRL-TYVYVD 71 (207)
T ss_dssp BHHHHHHHHHHHHHHHHHHHCS----------------EEECSBCSSSTTSBCSCEEECSSCC-EEEEEC
T ss_pred hhhHHHHHHHHHHHHHHhhccc----------------ceEecccCCCcccCCcceeecCCeE-EEEEeC
Confidence 4567888999999877654321 1344433 4555666666777 899964
No 7
>2m1l_A Cyclin-dependent kinase 2-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=17.09 E-value=90 Score=21.17 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=19.8
Q ss_pred cchhhhhHHHHHHHHHHHHHhhh
Q 039479 11 MNQFNWVEASLVRARSSIREAAL 33 (182)
Q Consensus 11 ~~~~~~~~~~l~~ar~~i~~a~~ 33 (182)
.+..+|+..++.+||..+|+-..
T Consensus 39 ks~~ERLkRgI~hAr~LVRECl~ 61 (69)
T 2m1l_A 39 KSAMERLKRGIIHARALVRECLA 61 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 35779999999999999998764
No 8
>2luv_A Integrin alpha-X; myristoylated, DPC micelles, cell adhesion; NMR {Homo sapiens}
Probab=16.14 E-value=46 Score=19.59 Aligned_cols=13 Identities=31% Similarity=0.365 Sum_probs=9.6
Q ss_pred hhhhhchHhhhcC
Q 039479 57 NAFHRSYLLMEKL 69 (182)
Q Consensus 57 ~~f~~sy~~m~~~ 69 (182)
.+|+|.|.||-..
T Consensus 3 GFFKR~~kEmme~ 15 (35)
T 2luv_A 3 GFFKRQYKEMMEE 15 (35)
Confidence 4788999887653
No 9
>2lke_A Integrin alpha-M; myristoylated, DPC micelles, cell adhesion; NMR {Homo sapiens} PDB: 2lkj_A*
Probab=11.85 E-value=79 Score=17.27 Aligned_cols=12 Identities=33% Similarity=0.409 Sum_probs=8.7
Q ss_pred hhhhhchHhhhc
Q 039479 57 NAFHRSYLLMEK 68 (182)
Q Consensus 57 ~~f~~sy~~m~~ 68 (182)
.+|+|.|.+|-.
T Consensus 3 GFFKR~~ke~m~ 14 (26)
T 2lke_A 3 GFFKRQYKDMMS 14 (26)
T ss_dssp GGHHHHHHHHHH
T ss_pred CchhhchHHHhh
Confidence 478888887654
No 10
>4fus_A RTX toxins and related Ca2+-binding protein; glycosyl hydrolase, GH48, hydrolase; HET: OHI CBI GOL; 1.75A {Hahella chejuensis}
Probab=11.42 E-value=2.6e+02 Score=26.57 Aligned_cols=54 Identities=13% Similarity=0.279 Sum_probs=41.3
Q ss_pred EecCCCCCCCCCCCCCCchhhHHHHHHHHhhCCCcccCCcCCcceEEEceeeeeeeeccccCCCCchhHHHHHHHHHHHH
Q 039479 74 VYEEGEPPMFHDGPCKSIYSTEGRFIHEMERSNTYKTKDPEKALVYFLPFSVVMMVEHLYVPGAHEINAIGHSIVDYISI 153 (182)
Q Consensus 74 VY~lg~pp~~h~~~~~~~Ya~E~~F~~~Ll~~s~~rT~DP~eAdlFfvPf~~~~~~~~ly~p~~~~~~~l~~~l~dyv~~ 153 (182)
.|++ .|.+|++|-+.-|....|=|+||.. .- |. .....++.+|..+|.|
T Consensus 423 ~Yd~--~PVYhDPpSN~WfG~QaWsmeRvAe-yY-------------------------Y~---tGd~~Ak~ildKWv~W 471 (695)
T 4fus_A 423 VYDE--NPVYHDPGSGTWFGWQAWSMQRVAE-YY-------------------------YL---KGDAQAKQLMDKWAPW 471 (695)
T ss_dssp EEES--SCSCBTTBTTTBTHHHHHHHHHHHH-HH-------------------------HH---HCCHHHHHHHHHHHHH
T ss_pred eecc--CccccCCCCCCccccccccHHHHHH-HH-------------------------HH---cccHHHHHHHHHHHHH
Confidence 6777 8999999999999999999999985 11 11 1224567889999999
Q ss_pred HHhcC
Q 039479 154 ISHKY 158 (182)
Q Consensus 154 I~~ky 158 (182)
+.++-
T Consensus 472 ~~~~~ 476 (695)
T 4fus_A 472 VLSNI 476 (695)
T ss_dssp HHHTC
T ss_pred HHhhe
Confidence 88653
Done!