Citrus Sinensis ID: 039481

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
DQSGKGDFKKIQDAIDSVPSNNSETVFIRVKPGTYREKIAVPADKPFITISGTKASSTIITWSDGGEIFESATFTVLADDFVGRFLTIENTYGSAGKAVALRVSADRAAFYGCRILSYQDTLLDDTGNHYYCNCYIEGATDFICGDAASLFESCHIHSLSTGNGAITAQKRVLPEENTGINFLGCKITGVGKAVLGRPWGTYSRVVYALTYMSGVIQPPGWDDWHDYIN
ccccccccccHHHHHHHcccccccEEEEEEEccEEEEEEEEccccccEEEEEcccccEEEEEcccccccccEEEEEEcccEEEEccEEEEcccccccEEEEEEcccEEEEEccEEEEccccEEcccccEEEEccEEEEEEEEEEcccEEEEEccEEEEEcccccEEEEcccccccccEEEEEEccEEEcccccEEccccccccEEEEEEcccccccccccccccccccc
cccccccEccHHHHHHHccccccccEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEccccccEcEEEEEEEcccEEEEEEEEEcccccccccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccEEEEccccccccccEEEEEcEEEEcccccccccccHHHccEEEEEcccccccccccccccccccc
dqsgkgdfKKIQDAidsvpsnnsetvfirvkpgtyrekiavpadkpfitisgtkasstiitwsdggeifesatftvLADDFVGRFLTIENTYGSAGKAVALRVSADRAAFYGCRILSYqdtllddtgnhyycncyiegatdficGDAASLFESchihslstgngaitaqkrvlpeentginflgckitgvgkavlgrpwgtYSRVVYALTYmsgviqppgwddwhdyin
dqsgkgdfkkiqdaidsvpsnnsetvfirvkpgtyrekiavpadkpfitisgtkasSTIITWSDGGEIFESATFTVLADDFVGRFLTIENTYGSAGKAVALRVSADRAAFYGCRILSYQDTLLDDTGNHYYCNCYIEGATDFICGDAASLFESCHIHSLSTGNGAITAQKRVLPEENTGINFLGCKITGVGKAVLGRPWGTYSRVVYALTYMsgviqppgwddwHDYIN
DQSGKGDFKKIQDAIDSVPSNNSETVFIRVKPGTYREKIAVPADKPFITISGTKASSTIITWSDGGEIFESATFTVLADDFVGRFLTIENTYGSAGKAVALRVSADRAAFYGCRILSYQDTLLDDTGNHYYCNCYIEGATDFICGDAASLFESCHIHSLSTGNGAITAQKRVLPEENTGINFLGCKITGVGKAVLGRPWGTYSRVVYALTYMSGVIQPPGWDDWHDYIN
************************TVFIRVKPGTYREKIAVPADKPFITISGTKASSTIITWSDGGEIFESATFTVLADDFVGRFLTIENTYGSAGKAVALRVSADRAAFYGCRILSYQDTLLDDTGNHYYCNCYIEGATDFICGDAASLFESCHIHSLSTGNGAITAQKRVLPEENTGINFLGCKITGVGKAVLGRPWGTYSRVVYALTYMSGVIQPPGWDDWHDY**
DQSGKGDFKKIQDAIDSVPSNNSETVFIRVKPGTYREKIAVPADKPFITISGTKASSTIITWSDGGEIFESATFTVLADDFVGRFLTIENTYGSAGKAVALRVSADRAAFYGCRILSYQDTLLDDTGNHYYCNCYIEGATDFICGDAASLFESCHIHSLSTGNGAITAQKRVLPEENTGINFLGCKITGVGKAVLGRPWGTYSRVVYALTYMSGVIQPPGW*DW*****
********KKIQDAIDSVPSNNSETVFIRVKPGTYREKIAVPADKPFITISGTKASSTIITWSDGGEIFESATFTVLADDFVGRFLTIENTYGSAGKAVALRVSADRAAFYGCRILSYQDTLLDDTGNHYYCNCYIEGATDFICGDAASLFESCHIHSLSTGNGAITAQKRVLPEENTGINFLGCKITGVGKAVLGRPWGTYSRVVYALTYMSGVIQPPGWDDWHDYIN
*****GDFKKIQDAIDSVPSNNSETVFIRVKPGTYREKIAVPADKPFITISGTKASSTIITWSDGGEIFESATFTVLADDFVGRFLTIENTYGSAGKAVALRVSADRAAFYGCRILSYQDTLLDDTGNHYYCNCYIEGATDFICGDAASLFESCHIHSLSTGNGAITAQKRVLPEENTGINFLGCKITGVGKAVLGRPWGTYSRVVYALTYMSGVIQPPGWDDWH****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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DQSGKGDFKKIQDAIDSVPSNNSETVFIRVKPGTYREKIAVPADKPFITISGTKASSTIITWSDGGEIFESATFTVLADDFVGRFLTIENTYGSAGKAVALRVSADRAAFYGCRILSYQDTLLDDTGNHYYCNCYIEGATDFICGDAASLFESCHIHSLSTGNGAITAQKRVLPEENTGINFLGCKITGVGKAVLGRPWGTYSRVVYALTYMSGVIQPPGWDDWHDYIN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query229 2.2.26 [Sep-21-2011]
Q9SIJ9352 Putative pectinesterase 1 yes no 0.986 0.642 0.653 1e-88
Q8VYZ3383 Probable pectinesterase 5 no no 0.982 0.587 0.497 5e-60
Q8LPF3362 Probable pectinesterase 6 no no 0.969 0.613 0.428 2e-54
Q9FM79380 Pectinesterase QRT1 OS=Ar no no 0.978 0.589 0.439 1e-51
Q9LY17361 Probable pectinesterase 5 no no 0.973 0.617 0.426 2e-50
Q9LVQ0317 Pectinesterase 31 OS=Arab no no 0.965 0.697 0.443 3e-50
Q9ZQA3407 Probable pectinesterase 1 no no 0.986 0.555 0.427 1e-49
Q9LY18361 Probable pectinesterase 4 no no 0.973 0.617 0.422 5e-49
Q4PSN0335 Probable pectinesterase 2 no no 0.982 0.671 0.433 3e-47
Q3E9D3330 Probable pectinesterase 5 no no 0.982 0.681 0.433 3e-47
>sp|Q9SIJ9|PME11_ARATH Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=3 SV=1 Back     alignment and function desciption
 Score =  325 bits (834), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 149/228 (65%), Positives = 181/228 (79%), Gaps = 2/228 (0%)

Query: 1   DQSGKGDFKKIQDAIDSVPSN--NSETVFIRVKPGTYREKIAVPADKPFITISGTKASST 58
           DQSGKGDF KIQ+AI+S+P N  NS+  FI VKPG YREK+ +PA+KP+IT+SGT+AS+T
Sbjct: 54  DQSGKGDFSKIQEAIESIPPNLNNSQLYFIWVKPGIYREKVVIPAEKPYITLSGTQASNT 113

Query: 59  IITWSDGGEIFESATFTVLADDFVGRFLTIENTYGSAGKAVALRVSADRAAFYGCRILSY 118
            + WSDG +I ES T T+ A DFV RFLTI+N +G+AG+AVALRV+AD+AAFYGC I SY
Sbjct: 114 FLIWSDGEDILESPTLTIFASDFVCRFLTIQNKFGTAGRAVALRVAADKAAFYGCVITSY 173

Query: 119 QDTLLDDTGNHYYCNCYIEGATDFICGDAASLFESCHIHSLSTGNGAITAQKRVLPEENT 178
           QDTLLDD GNHY+ NCYIEGATDFICG A+SL+E CH+HSLS  NG+ITAQ R    E +
Sbjct: 174 QDTLLDDNGNHYFKNCYIEGATDFICGSASSLYERCHLHSLSPNNGSITAQMRTSATEKS 233

Query: 179 GINFLGCKITGVGKAVLGRPWGTYSRVVYALTYMSGVIQPPGWDDWHD 226
           G  FLGCK+TG G   LGRPWG YSRVV+A ++ S V+ P GW+ W D
Sbjct: 234 GFTFLGCKLTGSGSTFLGRPWGAYSRVVFAYSFFSNVVAPQGWNQWGD 281
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q8VYZ3|PME53_ARATH Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1 Back     alignment and function description
>sp|Q8LPF3|PME68_ARATH Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1 Back     alignment and function description
>sp|Q9FM79|PME62_ARATH Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LY17|PME50_ARATH Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1 Back     alignment and function description
>sp|Q9LVQ0|PME31_ARATH Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZQA3|PME15_ARATH Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1 Back     alignment and function description
>sp|Q9LY18|PME49_ARATH Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1 Back     alignment and function description
>sp|Q4PSN0|PME29_ARATH Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1 Back     alignment and function description
>sp|Q3E9D3|PME55_ARATH Probable pectinesterase 55 OS=Arabidopsis thaliana GN=PME55 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query229
224077850315 predicted protein [Populus trichocarpa] 0.986 0.717 0.810 1e-104
147843788 342 hypothetical protein VITISV_004378 [Viti 0.986 0.660 0.769 1e-101
297744396 365 unnamed protein product [Vitis vinifera] 0.986 0.619 0.761 1e-100
359475108318 PREDICTED: putative pectinesterase 11 [V 0.986 0.710 0.761 1e-100
255543703 346 Pectinesterase-3 precursor, putative [Ri 0.978 0.647 0.763 3e-99
302142511 422 unnamed protein product [Vitis vinifera] 0.986 0.535 0.747 4e-99
225458247 365 PREDICTED: putative pectinesterase 11 [V 0.986 0.619 0.747 4e-99
449462266314 PREDICTED: putative pectinesterase 11-li 0.986 0.719 0.703 3e-89
15226598 352 pectinesterase 11 [Arabidopsis thaliana] 0.986 0.642 0.653 7e-87
449470138327 PREDICTED: putative pectinesterase 11-li 0.986 0.691 0.654 5e-85
>gi|224077850|ref|XP_002305435.1| predicted protein [Populus trichocarpa] gi|222848399|gb|EEE85946.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/227 (81%), Positives = 198/227 (87%), Gaps = 1/227 (0%)

Query: 1   DQSGKGDFKKIQDAIDSVPSNNSETVFIRVKPGTY-REKIAVPADKPFITISGTKASSTI 59
           +QSGKGDFKKIQDAIDSVPSNNSE VFI VKPGTY REKI VPADKPFIT+SGT+ S TI
Sbjct: 30  EQSGKGDFKKIQDAIDSVPSNNSELVFIWVKPGTYSREKIVVPADKPFITLSGTQPSDTI 89

Query: 60  ITWSDGGEIFESATFTVLADDFVGRFLTIENTYGSAGKAVALRVSADRAAFYGCRILSYQ 119
           ITW+DGG I ES T TVLA DFVGR+LTI+NT+GSAGKAVALRVS DRAAFYGCRILSYQ
Sbjct: 90  ITWNDGGNIMESPTLTVLASDFVGRYLTIQNTFGSAGKAVALRVSGDRAAFYGCRILSYQ 149

Query: 120 DTLLDDTGNHYYCNCYIEGATDFICGDAASLFESCHIHSLSTGNGAITAQKRVLPEENTG 179
           DTLLDDTG+HYY NCYIEGATDFICG+AASLFE CH+HS+ST NG+ITAQ R L  ENTG
Sbjct: 150 DTLLDDTGSHYYSNCYIEGATDFICGNAASLFERCHLHSISTNNGSITAQHRNLASENTG 209

Query: 180 INFLGCKITGVGKAVLGRPWGTYSRVVYALTYMSGVIQPPGWDDWHD 226
           + FLGCKITG G   LGRPWG YSRV+YA TYMSGVI P GWDDW D
Sbjct: 210 LVFLGCKITGAGTTFLGRPWGAYSRVLYAFTYMSGVIAPAGWDDWAD 256

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147843788|emb|CAN79458.1| hypothetical protein VITISV_004378 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744396|emb|CBI37658.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359475108|ref|XP_002280496.2| PREDICTED: putative pectinesterase 11 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255543703|ref|XP_002512914.1| Pectinesterase-3 precursor, putative [Ricinus communis] gi|223547925|gb|EEF49417.1| Pectinesterase-3 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|302142511|emb|CBI19714.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225458247|ref|XP_002281308.1| PREDICTED: putative pectinesterase 11 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449462266|ref|XP_004148862.1| PREDICTED: putative pectinesterase 11-like [Cucumis sativus] gi|449507359|ref|XP_004163009.1| PREDICTED: putative pectinesterase 11-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15226598|ref|NP_179755.1| pectinesterase 11 [Arabidopsis thaliana] gi|75206124|sp|Q9SIJ9.1|PME11_ARATH RecName: Full=Putative pectinesterase 11; Short=PE 11; AltName: Full=Pectin methylesterase 11; Short=AtPME11 gi|4567229|gb|AAD23644.1| putative pectinesterase [Arabidopsis thaliana] gi|330252108|gb|AEC07202.1| pectinesterase 11 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449470138|ref|XP_004152775.1| PREDICTED: putative pectinesterase 11-like [Cucumis sativus] gi|449515762|ref|XP_004164917.1| PREDICTED: putative pectinesterase 11-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query229
TAIR|locus:2049344352 PE11 "pectinesterase 11" [Arab 0.986 0.642 0.653 8.2e-83
TAIR|locus:2183214383 AT5G19730 [Arabidopsis thalian 0.982 0.587 0.497 7.5e-57
TAIR|locus:2169023362 PME5 "pectin methylesterase 5" 0.969 0.613 0.432 3.5e-52
TAIR|locus:2183364361 AT5G07430 [Arabidopsis thalian 0.965 0.612 0.430 6e-48
TAIR|locus:2040535407 AT2G36710 [Arabidopsis thalian 0.986 0.555 0.427 9.8e-48
TAIR|locus:2094652317 PME31 "pectin methylesterase 3 0.965 0.697 0.443 2e-47
TAIR|locus:2183349361 AT5G07420 [Arabidopsis thalian 0.973 0.617 0.422 6.9e-47
TAIR|locus:2093736335 AT3G24130 [Arabidopsis thalian 0.982 0.671 0.437 1e-45
TAIR|locus:2179659330 AT5G18990 [Arabidopsis thalian 0.982 0.681 0.437 1e-45
TAIR|locus:2086037344 AT3G17060 [Arabidopsis thalian 0.978 0.651 0.408 3.5e-43
TAIR|locus:2049344 PE11 "pectinesterase 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
 Identities = 149/228 (65%), Positives = 181/228 (79%)

Query:     1 DQSGKGDFKKIQDAIDSVPSN--NSETVFIRVKPGTYREKIAVPADKPFITISGTKASST 58
             DQSGKGDF KIQ+AI+S+P N  NS+  FI VKPG YREK+ +PA+KP+IT+SGT+AS+T
Sbjct:    54 DQSGKGDFSKIQEAIESIPPNLNNSQLYFIWVKPGIYREKVVIPAEKPYITLSGTQASNT 113

Query:    59 IITWSDGGEIFESATFTVLADDFVGRFLTIENTYGSAGKAVALRVSADRAAFYGCRILSY 118
              + WSDG +I ES T T+ A DFV RFLTI+N +G+AG+AVALRV+AD+AAFYGC I SY
Sbjct:   114 FLIWSDGEDILESPTLTIFASDFVCRFLTIQNKFGTAGRAVALRVAADKAAFYGCVITSY 173

Query:   119 QDTLLDDTGNHYYCNCYIEGATDFICGDAASLFESCHIHSLSTGNGAITAQKRVLPEENT 178
             QDTLLDD GNHY+ NCYIEGATDFICG A+SL+E CH+HSLS  NG+ITAQ R    E +
Sbjct:   174 QDTLLDDNGNHYFKNCYIEGATDFICGSASSLYERCHLHSLSPNNGSITAQMRTSATEKS 233

Query:   179 GINFLGCKITGVGKAVLGRPWGTYSRVVYALTYMSGVIQPPGWDDWHD 226
             G  FLGCK+TG G   LGRPWG YSRVV+A ++ S V+ P GW+ W D
Sbjct:   234 GFTFLGCKLTGSGSTFLGRPWGAYSRVVFAYSFFSNVVAPQGWNQWGD 281
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
TAIR|locus:2183214 AT5G19730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169023 PME5 "pectin methylesterase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183364 AT5G07430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040535 AT2G36710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094652 PME31 "pectin methylesterase 31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183349 AT5G07420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093736 AT3G24130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179659 AT5G18990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086037 AT3G17060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SIJ9PME11_ARATH3, ., 1, ., 1, ., 1, 10.65350.98680.6420yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.824
3rd Layer3.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query229
PLN02432293 PLN02432, PLN02432, putative pectinesterase 1e-154
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 7e-94
PLN02773317 PLN02773, PLN02773, pectinesterase 1e-75
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 2e-75
PLN02671359 PLN02671, PLN02671, pectinesterase 2e-74
PLN02634359 PLN02634, PLN02634, probable pectinesterase 2e-74
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 3e-74
PLN02497331 PLN02497, PLN02497, probable pectinesterase 1e-73
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 9e-63
PLN02304379 PLN02304, PLN02304, probable pectinesterase 8e-61
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 1e-53
PLN02176340 PLN02176, PLN02176, putative pectinesterase 1e-52
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 2e-51
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 8e-50
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-48
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 2e-48
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 3e-47
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-46
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 3e-46
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 3e-46
PLN02314586 PLN02314, PLN02314, pectinesterase 4e-45
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 5e-45
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 1e-44
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-44
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 2e-44
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 2e-44
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 6e-43
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 3e-42
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 7e-41
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 4e-39
PLN02197588 PLN02197, PLN02197, pectinesterase 2e-33
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 3e-33
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 2e-30
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 6e-25
TIGR04247 377 TIGR04247, NosD_copper_fam, nitrous oxide reductas 1e-04
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information 
 Score =  428 bits (1102), Expect = e-154
 Identities = 177/226 (78%), Positives = 198/226 (87%)

Query: 1   DQSGKGDFKKIQDAIDSVPSNNSETVFIRVKPGTYREKIAVPADKPFITISGTKASSTII 60
           DQSGKGDF+KIQDAID+VPSNNS+ VFI VKPG YREK+ VPADKPFIT+SGT+AS+TII
Sbjct: 16  DQSGKGDFRKIQDAIDAVPSNNSQLVFIWVKPGIYREKVVVPADKPFITLSGTQASNTII 75

Query: 61  TWSDGGEIFESATFTVLADDFVGRFLTIENTYGSAGKAVALRVSADRAAFYGCRILSYQD 120
           TW+DGG+IFES T +VLA DFVGRFLTI+NT+GS+GKAVALRV+ DRAAFYGCRILSYQD
Sbjct: 76  TWNDGGDIFESPTLSVLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQD 135

Query: 121 TLLDDTGNHYYCNCYIEGATDFICGDAASLFESCHIHSLSTGNGAITAQKRVLPEENTGI 180
           TLLDDTG HYY NCYIEGATDFICG+AASLFE CH+HSLS  NGAITAQ+R    ENTG 
Sbjct: 136 TLLDDTGRHYYRNCYIEGATDFICGNAASLFEKCHLHSLSPNNGAITAQQRTSASENTGF 195

Query: 181 NFLGCKITGVGKAVLGRPWGTYSRVVYALTYMSGVIQPPGWDDWHD 226
            FLGCK+TG G   LGRPWG YSRVV+AL+YMS V+ P GWDDW D
Sbjct: 196 TFLGCKLTGAGTTYLGRPWGPYSRVVFALSYMSSVVAPQGWDDWGD 241

Length = 293
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information
>gnl|CDD|234521 TIGR04247, NosD_copper_fam, nitrous oxide reductase family maturation protein NosD Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 229
PLN02432293 putative pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02497331 probable pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02304379 probable pectinesterase 100.0
PLN02671359 pectinesterase 100.0
PLN02773317 pectinesterase 100.0
PLN02480343 Probable pectinesterase 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.61
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 99.02
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.98
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.96
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.59
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 98.54
KOG1777 625 consensus Putative Zn-finger protein [General func 97.89
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.41
smart00656190 Amb_all Amb_all domain. 97.36
PF01696 386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.33
PLN02793443 Probable polygalacturonase 97.31
PLN02480343 Probable pectinesterase 97.3
PLN02773317 pectinesterase 97.17
PLN02671359 pectinesterase 97.15
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 97.15
PLN02682369 pectinesterase family protein 97.14
PLN03003 456 Probable polygalacturonase At3g15720 97.12
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.1
PLN03010409 polygalacturonase 97.03
PLN02497331 probable pectinesterase 96.99
PLN02218431 polygalacturonase ADPG 96.97
PLN02432293 putative pectinesterase 96.9
PLN02665366 pectinesterase family protein 96.89
PLN02155394 polygalacturonase 96.72
PLN02176340 putative pectinesterase 96.67
PLN02634359 probable pectinesterase 96.65
PLN02304379 probable pectinesterase 96.42
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 96.4
PRK10531422 acyl-CoA thioesterase; Provisional 96.33
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 96.26
PLN02916502 pectinesterase family protein 96.25
PLN02170529 probable pectinesterase/pectinesterase inhibitor 96.2
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 96.18
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 96.01
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 96.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 95.93
PLN02197588 pectinesterase 95.91
PLN02488509 probable pectinesterase/pectinesterase inhibitor 95.89
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 95.81
PLN02484587 probable pectinesterase/pectinesterase inhibitor 95.76
PLN02506537 putative pectinesterase/pectinesterase inhibitor 95.75
PLN02301548 pectinesterase/pectinesterase inhibitor 95.74
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 95.71
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 95.7
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 95.52
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 95.46
PLN02416541 probable pectinesterase/pectinesterase inhibitor 95.45
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 95.44
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 95.25
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 95.25
PLN02314586 pectinesterase 95.13
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 95.06
PLN02313587 Pectinesterase/pectinesterase inhibitor 94.85
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 94.72
PLN02201520 probable pectinesterase/pectinesterase inhibitor 94.33
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 93.22
PLN02188404 polygalacturonase/glycoside hydrolase family prote 93.19
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 92.8
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 92.08
PF03718 582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 91.63
PLN02218431 polygalacturonase ADPG 91.35
PLN02793443 Probable polygalacturonase 89.75
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 89.44
PLN02155394 polygalacturonase 83.25
smart00722146 CASH Domain present in carbohydrate binding protei 82.74
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 81.88
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 81.66
PLN03003 456 Probable polygalacturonase At3g15720 80.13
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 80.12
>PLN02432 putative pectinesterase Back     alignment and domain information 
Probab=100.00  E-value=1.2e-81  Score=554.52  Aligned_cols=227  Identities=78%  Similarity=1.322  Sum_probs=219.9

Q ss_pred             CCCCCCCchhHHHHHHhCCCCCCceEEEEEcCcEEeeeeeecCCCCceEEecCCCCCeEEEeCCCCCcccceEEEEEcCc
Q 039481            1 DQSGKGDFKKIQDAIDSVPSNNSETVFIRVKPGTYREKIAVPADKPFITISGTKASSTIITWSDGGEIFESATFTVLADD   80 (229)
Q Consensus         1 ~~dg~g~f~TIq~Ai~aa~~~~~~~~~I~I~~G~Y~E~v~I~~~k~~itl~G~~~~~t~I~~~~~~~~~~~at~~v~a~~   80 (229)
                      ++||+|+|+|||+|||++|..+++|++|+|+||+|+|+|.||++||+|||+|+++++|+|+|++...+..++||.|.+++
T Consensus        16 a~~Gsg~f~TIq~Aida~p~~~~~~~~I~I~~G~Y~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v~a~~   95 (293)
T PLN02432         16 DQSGKGDFRKIQDAIDAVPSNNSQLVFIWVKPGIYREKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSVLASD   95 (293)
T ss_pred             CCCCCCCccCHHHHHhhccccCCceEEEEEeCceeEEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEEECCC
Confidence            57999999999999999999988999999999999999999999999999999999999999998888999999999999


Q ss_pred             EEEEceEEEecCCCCCcEEEEEEeCCceEEEEEEEeeccceeEecCCcEEEEccEEcCceeEEecCcceEEEeeEEEEec
Q 039481           81 FVGRFLTIENTYGSAGKAVALRVSADRAAFYGCRILSYQDTLLDDTGNHYYCNCYIEGATDFICGDAASLFESCHIHSLS  160 (229)
Q Consensus        81 ~~~~~lti~N~~g~~~qa~Al~~~~d~~~~~~c~~~g~QDTl~~~~g~~~~~~c~I~G~vDfI~G~~~a~fe~c~i~~~~  160 (229)
                      |+++||||+|+++..+||+||++.+||+.|++|+|+|+|||||.+.|||||+||+|+|+||||||+|+++||+|+|+++.
T Consensus        96 f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~~gr~yf~~c~I~G~VDFIFG~g~a~Fe~c~i~s~~  175 (293)
T PLN02432         96 FVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQDTLLDDTGRHYYRNCYIEGATDFICGNAASLFEKCHLHSLS  175 (293)
T ss_pred             eEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEecccceeEECCCCEEEEeCEEEecccEEecCceEEEEeeEEEEec
Confidence            99999999999998889999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCceEEEcccCCCCCCeeEEEeccEEeeeccEEeccCCCCcceEEEEccccCCcccCCCCCCCCCC
Q 039481          161 TGNGAITAQKRVLPEENTGINFLGCKITGVGKAVLGRPWGTYSRVVYALTYMSGVIQPPGWDDWHDY  227 (229)
Q Consensus       161 ~~~g~ita~~r~~~~~~~g~vf~~c~i~~~~~~~LGRpw~~~~~vv~~~~~l~~~i~p~GW~~w~~~  227 (229)
                      +..|+||||+|+++...+||||.+|+|++.+++||||||++||||||++|+|+++|.|+||++|++.
T Consensus       176 ~~~g~itA~~r~~~~~~~Gfvf~~c~itg~g~~yLGRpW~~~srvvf~~t~l~~~I~p~GW~~w~~~  242 (293)
T PLN02432        176 PNNGAITAQQRTSASENTGFTFLGCKLTGAGTTYLGRPWGPYSRVVFALSYMSSVVAPQGWDDWGDS  242 (293)
T ss_pred             CCCCeEEecCCCCCCCCceEEEEeeEEcccchhhccCCCCCccEEEEEecccCCeEcCcccCccCCC
Confidence            6679999999988888999999999999999999999999999999999999999999999999864

>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query229
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 3e-42
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 3e-36
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 3e-13
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 3e-13
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 3e-12
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 3e-12
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  168 bits (425), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 94/238 (39%), Positives = 129/238 (54%), Gaps = 17/238 (7%)
Query: 4   GKGDFKKIQDAIDSVPSNNSETVFIRVKPGTYREKIAVPADKPFITISGTKASSTIITWS 63
           G GD+K + +A+ + P ++     IR+K G YRE + VP  K  I   G   +STIIT S
Sbjct: 15  GSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITAS 74
Query: 64  ----DGGEIFESATFTVLADDFVGRFLTIENTYGSAG-KAVALRVSADRAAFYGCRILSY 118
               DG   F SAT   +   F+ R +T +NT G+A  +AVALRV +D +AFY C IL+Y
Sbjct: 75  KNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAY 134
Query: 119 QDTLLDDTGNHYYCNCYIEGATDFICGDAASLFESCHIHSLSTGNG---AITAQKRVLPE 175
           QD+L   +   ++ NC+I G  DFI G+AA + + C IH+   G+G    +TAQ R  P 
Sbjct: 135 QDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPN 194
Query: 176 ENTGINFLGCKITGVG---------KAVLGRPWGTYSRVVYALTYMSGVIQPPGWDDW 224
           +NTGI     +I                LGRPW  YSR V   + ++ VI P GW  W
Sbjct: 195 QNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWFPW 252
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query229
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-106
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-105
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-89
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 8e-89
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 4e-83
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  308 bits (790), Expect = e-106
 Identities = 93/243 (38%), Positives = 126/243 (51%), Gaps = 17/243 (6%)

Query: 1   DQSGKGDFKKIQDAIDSVPSNNSETVFIRVKPGTYREKIAVPADKPFITISGTKASSTII 60
              G GD+K + +A+ + P ++     IR+K G YRE + VP  K  I   G   +STII
Sbjct: 12  AADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTII 71

Query: 61  TWS----DGGEIFESATFTVLADDFVGRFLTIENTYGSAGK-AVALRVSADRAAFYGCRI 115
           T S    DG   F SAT   +   F+ R +T +NT G+A   AVALRV +D +AFY C I
Sbjct: 72  TASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDI 131

Query: 116 LSYQDTLLDDTGNHYYCNCYIEGATDFICGDAASLFESCHIHSLSTG---NGAITAQKRV 172
           L+YQD+L   +   ++ NC+I G  DFI G+AA + + C IH+   G      +TAQ R 
Sbjct: 132 LAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRT 191

Query: 173 LPEENTGINFLGCKITG---------VGKAVLGRPWGTYSRVVYALTYMSGVIQPPGWDD 223
            P +NTGI     +I                LGRPW  YSR V   + ++ VI P GW  
Sbjct: 192 DPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWFP 251

Query: 224 WHD 226
           W  
Sbjct: 252 WDG 254
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query229
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.7
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.59
2inu_A 410 Insulin fructotransferase; right-handed parallel b 99.09
2pyg_A 377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.61
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 98.3
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.24
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.07
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.05
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.9
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.86
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.85
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.8
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.75
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.74
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.74
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.71
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.69
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.64
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.64
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.61
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.59
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.59
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 97.52
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.35
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.34
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.3
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 97.29
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.19
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.17
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.13
1k5c_A 335 Endopolygalacturonase; beta helical structure, gly 96.79
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 96.76
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.61
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.58
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 96.18
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 95.86
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 95.8
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 95.77
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 95.72
1x0c_A 549 Isopullulanase; glycoside hydrolase family 49, gly 95.7
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 95.08
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 94.24
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 93.02
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 92.41
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 92.14
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 92.12
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 91.8
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 91.37
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 88.5
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 86.56
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 84.95
1vcl_A432 Hemolytic lectin CEL-III; hemolysis, hemagglutinat 82.53
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 80.09
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=3.1e-74  Score=513.81  Aligned_cols=227  Identities=37%  Similarity=0.661  Sum_probs=214.1

Q ss_pred             CCCCCCCchhHHHHHHhCCCCCCceEEEEEcCcEEeeeeeecCCCCceEEecCCCCCeEEEeCCC----CCcccceEEEE
Q 039481            1 DQSGKGDFKKIQDAIDSVPSNNSETVFIRVKPGTYREKIAVPADKPFITISGTKASSTIITWSDG----GEIFESATFTV   76 (229)
Q Consensus         1 ~~dg~g~f~TIq~Ai~aa~~~~~~~~~I~I~~G~Y~E~v~I~~~k~~itl~G~~~~~t~I~~~~~----~~~~~~at~~v   76 (229)
                      ++||+|+|+|||+||+++|+++++|++|+|+||+|+|+|.||+.||+|||+|++.++|+|+++..    .+++.++||.|
T Consensus         8 ~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~satv~v   87 (317)
T 1xg2_A            8 AQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFRSATLAA   87 (317)
T ss_dssp             CTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCSGGGCSEEE
T ss_pred             CCCCCCCcccHHHHHhhcccCCCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCcccceeEEEE
Confidence            57899999999999999999999999999999999999999999999999999999999999874    34678999999


Q ss_pred             EcCcEEEEceEEEecCCCC-CcEEEEEEeCCceEEEEEEEeeccceeEecCCcEEEEccEEcCceeEEecCcceEEEeeE
Q 039481           77 LADDFVGRFLTIENTYGSA-GKAVALRVSADRAAFYGCRILSYQDTLLDDTGNHYYCNCYIEGATDFICGDAASLFESCH  155 (229)
Q Consensus        77 ~a~~~~~~~lti~N~~g~~-~qa~Al~~~~d~~~~~~c~~~g~QDTl~~~~g~~~~~~c~I~G~vDfI~G~~~a~fe~c~  155 (229)
                      .+++|+++||||+|++++. .||+||++.+|++.|++|+|.|+|||||++.+||||++|+|+|+||||||+++++||+|+
T Consensus        88 ~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~~~avf~~c~  167 (317)
T 1xg2_A           88 VGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQ  167 (317)
T ss_dssp             CSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEECCEEEEESCE
T ss_pred             ECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcCCceEEEeeeE
Confidence            9999999999999999864 499999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecC---CCceEEEcccCCCCCCeeEEEeccEEeeec---------cEEeccCCCCcceEEEEccccCCcccCCCCCC
Q 039481          156 IHSLST---GNGAITAQKRVLPEENTGINFLGCKITGVG---------KAVLGRPWGTYSRVVYALTYMSGVIQPPGWDD  223 (229)
Q Consensus       156 i~~~~~---~~g~ita~~r~~~~~~~g~vf~~c~i~~~~---------~~~LGRpw~~~~~vv~~~~~l~~~i~p~GW~~  223 (229)
                      |+++++   +.++||||+|+++.+.+||||.+|+|++++         ++||||||++|+|+||++|+|+++|.|+||.+
T Consensus       168 i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~~~I~p~GW~~  247 (317)
T 1xg2_A          168 LVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINPAGWAE  247 (317)
T ss_dssp             EEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEEEEESCEECTTBCTTCSCC
T ss_pred             EEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceEEEEecccCCccccccccc
Confidence            999764   457999999999999999999999999875         69999999999999999999999999999999


Q ss_pred             CCCC
Q 039481          224 WHDY  227 (229)
Q Consensus       224 w~~~  227 (229)
                      |++.
T Consensus       248 w~~~  251 (317)
T 1xg2_A          248 WDGD  251 (317)
T ss_dssp             SSTT
T ss_pred             CCCC
Confidence            9864
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1vcl_A Hemolytic lectin CEL-III; hemolysis, hemagglutination, pore-forming, calcium, toxin; HET: BTB; 1.70A {Cucumaria echinata} SCOP: b.42.2.1 b.42.2.1 d.281.1.1 PDB: 2z48_A* 2z49_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 229
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 2e-88
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 4e-64
d1ru4a_ 400 b.80.1.9 (A:) Pectate transeliminase {Erwinia chry 0.002
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  261 bits (669), Expect = 2e-88
 Identities = 94/243 (38%), Positives = 128/243 (52%), Gaps = 17/243 (6%)

Query: 1   DQSGKGDFKKIQDAIDSVPSNNSETVFIRVKPGTYREKIAVPADKPFITISGTKASSTII 60
              G GD+K + +A+ + P ++     IR+K G YRE + VP  K  I   G   +STII
Sbjct: 12  AADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTII 71

Query: 61  TWS----DGGEIFESATFTVLADDFVGRFLTIENTYGSAGK-AVALRVSADRAAFYGCRI 115
           T S    DG   F SAT   +   F+ R +T +NT G+A   AVALRV +D +AFY C I
Sbjct: 72  TASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDI 131

Query: 116 LSYQDTLLDDTGNHYYCNCYIEGATDFICGDAASLFESCHIHSLSTGNG---AITAQKRV 172
           L+YQD+L   +   ++ NC+I G  DFI G+AA + + C IH+   G+G    +TAQ R 
Sbjct: 132 LAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRT 191

Query: 173 LPEENTGINFLGCKITGVG---------KAVLGRPWGTYSRVVYALTYMSGVIQPPGWDD 223
            P +NTGI     +I                LGRPW  YSR V   + ++ VI P GW  
Sbjct: 192 DPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWFP 251

Query: 224 WHD 226
           W  
Sbjct: 252 WDG 254
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Length = 400 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query229
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1ru4a_ 400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.15
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 99.14
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.36
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.85
d1hg8a_ 349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.66
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.52
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.37
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.3
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.3
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.2
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.17
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 97.11
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 96.97
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.97
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.61
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 95.83
d1ia5a_ 339 Polygalacturonase {Fungus (Aspergillus aculeatus) 95.52
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 95.17
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 93.66
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 92.19
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 91.57
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 90.82
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 89.2
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 88.79
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 88.59
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 82.86
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=1e-77  Score=533.36  Aligned_cols=227  Identities=40%  Similarity=0.725  Sum_probs=214.3

Q ss_pred             CCCCCCCchhHHHHHHhCCCCCCceEEEEEcCcEEeeeeeecCCCCceEEecCCCCCeEEEeCCCC----CcccceEEEE
Q 039481            1 DQSGKGDFKKIQDAIDSVPSNNSETVFIRVKPGTYREKIAVPADKPFITISGTKASSTIITWSDGG----EIFESATFTV   76 (229)
Q Consensus         1 ~~dg~g~f~TIq~Ai~aa~~~~~~~~~I~I~~G~Y~E~v~I~~~k~~itl~G~~~~~t~I~~~~~~----~~~~~at~~v   76 (229)
                      |+||+|||+|||+||+++|+++++|++|+|+||+|+|+|+||++||+|||+|++++.|+|+++...    ++..++||.+
T Consensus        12 ~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~t~~sat~~v   91 (319)
T d1gq8a_          12 AADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTFNSATVAA   91 (319)
T ss_dssp             CTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCTGGGCSEEE
T ss_pred             CCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCCccccccceee
Confidence            689999999999999999999999999999999999999999999999999999999999998653    3778999999


Q ss_pred             EcCcEEEEceEEEecCCCC-CcEEEEEEeCCceEEEEEEEeeccceeEecCCcEEEEccEEcCceeEEecCcceEEEeeE
Q 039481           77 LADDFVGRFLTIENTYGSA-GKAVALRVSADRAAFYGCRILSYQDTLLDDTGNHYYCNCYIEGATDFICGDAASLFESCH  155 (229)
Q Consensus        77 ~a~~~~~~~lti~N~~g~~-~qa~Al~~~~d~~~~~~c~~~g~QDTl~~~~g~~~~~~c~I~G~vDfI~G~~~a~fe~c~  155 (229)
                      .+++|+++||||+|++|.. +||+||++.+||+.|++|+|+|+|||||++.|||||++|+|+|+||||||+++++||+|+
T Consensus        92 ~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIfG~~~a~f~~c~  171 (319)
T d1gq8a_          92 VGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCD  171 (319)
T ss_dssp             CSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEESCEEEEESCE
T ss_pred             ecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEecCceeEeecce
Confidence            9999999999999999864 599999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCC---CceEEEcccCCCCCCeeEEEeccEEeeec---------cEEeccCCCCcceEEEEccccCCcccCCCCCC
Q 039481          156 IHSLSTG---NGAITAQKRVLPEENTGINFLGCKITGVG---------KAVLGRPWGTYSRVVYALTYMSGVIQPPGWDD  223 (229)
Q Consensus       156 i~~~~~~---~g~ita~~r~~~~~~~g~vf~~c~i~~~~---------~~~LGRpw~~~~~vv~~~~~l~~~i~p~GW~~  223 (229)
                      |+++...   .++||||+|+++..++||||.+|+|++++         ++||||||++++||||++|+|+++|.|+||.+
T Consensus       172 i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~l~~~I~p~GW~~  251 (319)
T d1gq8a_         172 IHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWFP  251 (319)
T ss_dssp             EEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCEECTTBCTTCCCC
T ss_pred             eeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEecccccccccccccc
Confidence            9997643   35899999999999999999999999874         57999999999999999999999999999999


Q ss_pred             CCCC
Q 039481          224 WHDY  227 (229)
Q Consensus       224 w~~~  227 (229)
                      |+..
T Consensus       252 w~~~  255 (319)
T d1gq8a_         252 WDGN  255 (319)
T ss_dssp             SSTT
T ss_pred             cCCC
Confidence            9864
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure