BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>039482
EEKLTNSSIAKDSSDDDSVLGTPIELDMRGTVMNHGNPKNKLRFRSRLCKEEGPGIEQFQ
IVGEATPGKKLLGCGYPLGGAHLCMFQWVRHLQDGTKHYIKGAIEPEYVVTADDVGKLIS
VECIPMDDQGHMLSVENVRLMSIQPKFVTCNPEMQSEIDMHMSKGEASFSVLLLVPSSEN
QGPVTLPATLILRRSSFQIKINSTEYVVIEEKFTIRLS

High Scoring Gene Products

Symbol, full name Information P value
AT3G03560 protein from Arabidopsis thaliana 2.5e-49
AT5G23490 protein from Arabidopsis thaliana 8.4e-25

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  039482
        (218 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2096434 - symbol:AT3G03560 species:3702 "Arabi...   514  2.5e-49   1
TAIR|locus:2154468 - symbol:AT5G23490 "AT5G23490" species...   292  8.4e-25   1


>TAIR|locus:2096434 [details] [associations]
            symbol:AT3G03560 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0005886 "plasma membrane"
            evidence=IDA] GO:GO:0005886 EMBL:CP002686 IPI:IPI00548076
            RefSeq:NP_187006.2 UniGene:At.44334 ProteinModelPortal:F4J152
            PRIDE:F4J152 EnsemblPlants:AT3G03560.1 GeneID:821235
            KEGG:ath:AT3G03560 OMA:QSIEGAT Uniprot:F4J152
        Length = 521

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 100/167 (59%), Positives = 130/167 (77%)

Query:    51 EEGPGIEQFQIVGEATPGKKLLGCGYPLGGAHLCMFQWVRHLQDGTKHYIKGAIEPEYVV 110
             EEGPGI+ FQI+G+A PG+K+LGCG+P+ G  LCMFQWVRHL+DGT+ YI+GA  PEY+V
Sbjct:   306 EEGPGIDGFQIIGDAIPGEKVLGCGFPVRGTTLCMFQWVRHLEDGTRQYIEGATHPEYIV 365

Query:   111 TADDVGKLISVECIPMDDQGHMLSVENVRLMSIQPKFVTCNPEMQSEIDMHMSKGEASFS 170
             TADDV KLI+VECIPMDDQG     E VRL +     + C+ EMQ+EID ++S+G+ASF+
Sbjct:   366 TADDVDKLIAVECIPMDDQGRQ--GELVRLFANDQNKIRCDTEMQTEIDTYISRGQASFN 423

Query:   171 VLLLVPSSENQGPVTLPATLILRRSSFQIKINSTEYVVIEEKFTIRL 217
             V LL+ SSE+  P    AT++L+RSS+QIK N+TE VVI EK++  L
Sbjct:   424 VQLLMDSSESWEP----ATVVLKRSSYQIKTNTTEAVVISEKYSKEL 466


>TAIR|locus:2154468 [details] [associations]
            symbol:AT5G23490 "AT5G23490" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002688 IPI:IPI00529720 RefSeq:NP_197740.2
            UniGene:At.47222 ProteinModelPortal:F4KCX5
            EnsemblPlants:AT5G23490.1 GeneID:832415 KEGG:ath:AT5G23490
            OMA:ENGHEER Uniprot:F4KCX5
        Length = 729

 Score = 292 (107.8 bits), Expect = 8.4e-25, P = 8.4e-25
 Identities = 64/161 (39%), Positives = 94/161 (58%)

Query:    54 PGIEQFQIVGEATPGKKLLGCGYPLGGAHLCMFQWVRHLQDGTKHYIKGAIEPEYVVTAD 113
             PGIE  QI GE  PG +L  CGY + G   C F+WV HL+DG+ +YI GA +P Y+VTAD
Sbjct:   508 PGIEDLQISGEPYPGHELQACGYSINGTTSCNFEWVCHLEDGSVNYIDGAKQPNYLVTAD 567

Query:   114 DVGKLISVECIPMDDQGHMLSVENVRLMSIQPKFVTCNPEMQSEIDMHMSKGEASFSVLL 173
             DV   +++E  P+DD+      E V++ +   + + C+P+MQS I+  +  G AS+ V L
Sbjct:   568 DVDLYLAIEVQPLDDRNR--KGELVKVFANDNRKIACHPDMQSNIEKTLHTGHASYKVSL 625

Query:   174 LVPSSENQGPVTLPATLILRRSSFQIKINSTEYVVIEEKFT 214
              V   +    +   ATL ++R  + IK  S   + I EKF+
Sbjct:   626 AVGFVD----IWEAATLSIKREGYSIKCISD--LTIAEKFS 660


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.136   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      218       211   0.00081  112 3  11 22  0.38    33
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  168 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.80u 0.20s 17.00t   Elapsed:  00:00:01
  Total cpu time:  16.80u 0.20s 17.00t   Elapsed:  00:00:01
  Start:  Sat May 11 03:13:10 2013   End:  Sat May 11 03:13:11 2013

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