BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039482
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DIX|A Chain A, Crystal Structure Of The Ig-Ph Domain Of Actin-Binding
Protein Scab1
pdb|4DIX|B Chain B, Crystal Structure Of The Ig-Ph Domain Of Actin-Binding
Protein Scab1
Length = 230
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 14/132 (10%)
Query: 84 CMFQWVRHLQDGT-KHYIKGAIEPEYVVTADDVGKLISVECIPMDDQGHMLSVENVRLMS 142
C QW R DG+ K I GA + Y DVG+++ + I GH LS+ V
Sbjct: 42 CTIQWYRSSSDGSKKELISGATKSVYAPEPFDVGRVLHADIIY---DGHSLSLSTV--GK 96
Query: 143 IQPKFVTCNPEMQSEIDMHMSKGEASFSVLLLVPSSENQGPVTLPATLILRRSSFQIKIN 202
I P + S ++ + K + F+V++ S E+ T + + +IK+
Sbjct: 97 IDPA-----AGLGSYVEALVRKHDVDFNVVVTQMSGEDH---TSESIHLFHVGKMRIKLC 148
Query: 203 STEYVVIEEKFT 214
+ V+ +E ++
Sbjct: 149 KGKTVIAKEYYS 160
>pdb|1FWU|A Chain A, Crystal Structure Of The Cysteine-Rich Domain Of Mannose
Receptor Complexed With 3-So4-Lewis(X)
pdb|1FWV|A Chain A, Crystal Structure Of The Cysteine-Rich Domain Of Mannose
Receptor Complexed With 3-So4-Lewis(A)
Length = 134
Score = 33.9 bits (76), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 128 DQGHMLSVENVRLMSIQPKFVTCNPEMQSEIDMHMSKGE---ASFSVLLLVPSSENQGPV 184
++ H V+ + +S+Q TCNPE +S+ +S + +F + L VPS + V
Sbjct: 9 NEDHKRCVDALSAISVQT--ATCNPEAESQKFRWVSDSQIMSVAFKLCLGVPSKTDWASV 66
Query: 185 TLPA 188
TL A
Sbjct: 67 TLYA 70
>pdb|1DQG|A Chain A, Crystal Structure Of The Cysteine Rich Domain Of Mannose
Receptor
pdb|1DQO|A Chain A, Crystal Structure Of The Cysteine Rich Domain Of Mannose
Receptor Complexed With Acetylgalactosamine-4-Sulfate
Length = 135
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 128 DQGHMLSVENVRLMSIQPKFVTCNPEMQSEIDMHMSKGE---ASFSVLLLVPSSENQGPV 184
++ H V+ + +S+Q TCNPE +S+ +S + +F + L VPS + V
Sbjct: 10 NEDHKRCVDALSAISVQT--ATCNPEAESQKFRWVSDSQIMSVAFKLCLGVPSKTDWASV 67
Query: 185 TLPA 188
TL A
Sbjct: 68 TLYA 71
>pdb|3EFY|A Chain A, Structure Of The Cyclomodulin Cif From Pathogenic
Escherichia Coli
pdb|3EFY|B Chain B, Structure Of The Cyclomodulin Cif From Pathogenic
Escherichia Coli
Length = 195
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 101 KGAIEPEYVVTADDVGKLISVECIPMDDQGHMLSVENVRLMSIQ--PKFVTCNPEMQSEI 158
KG +EP VTA+ + KL +D G EN + +S++ + ++C PE +S +
Sbjct: 3 KGIVEPSCGVTANAIMKLF------LDKDGFSYCFENEQTLSLEQLQERLSCMPECKSFV 56
Query: 159 DMHMSKGEASFSVLLLVPSSEN 180
+ ++ G + ++ +P EN
Sbjct: 57 -LRVNDGALGHAYIVDIPKGEN 77
>pdb|2QF2|A Chain A, Rat Cytosolic Pepck In Complex With Oxaloacetic Acid And
Gdp.
pdb|2QF2|B Chain B, Rat Cytosolic Pepck In Complex With Oxaloacetic Acid And
Gdp.
pdb|2QEW|A Chain A, Rat Cytosolic Pepck, In Complex With Manganese Ion.
pdb|2QEY|A Chain A, Rat Cytosolic Pepck In Complex With Gtp
pdb|2QF1|A Chain A, Rat Cytosolic Pepck In Complex With Oxaloacetic Acid.
pdb|2RK7|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Oxalate
pdb|2RK7|B Chain B, The Structure Of Rat Cytosolic Pepck In Complex With
Oxalate
pdb|2RK8|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphonoformate
pdb|2RK8|B Chain B, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphonoformate
pdb|2RKA|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphoglycolate
pdb|2RKA|C Chain C, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphoglycolate
pdb|2RKD|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With 3-
Phosphonopropionate
pdb|2RKE|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Sulfoacetate.
pdb|3DT2|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Oxalate And Gtp
pdb|3DT4|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Oxalate And Gtp
pdb|3DT4|C Chain C, The Structure Of Rat Cytosolic Pepck In Complex With
Oxalate And Gtp
pdb|3DT7|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With Beta-
Sulfopyruvate And Gtp
pdb|3DT7|B Chain B, The Structure Of Rat Cytosolic Pepck In Complex With Beta-
Sulfopyruvate And Gtp
pdb|3DTB|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphoglycolate And Gdp
pdb|3DTB|B Chain B, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphoglycolate And Gdp
Length = 624
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 42 LRFRSRLCKEEGPGIEQFQIVGEATP--GKKLLGCGYP--LGGAHLCM 85
LR SRL KEEG E I+G P KK L +P G +L M
Sbjct: 250 LRIASRLAKEEGWLAEHMLILGITNPEGKKKYLAAAFPSACGKTNLAM 297
>pdb|3MOE|A Chain A, The Structure Of Rat Cytosolic Pepck Mutant A467g In
Complex With Beta-Sulfopyruvate And Gtp
pdb|3MOF|A Chain A, The Structure Of Rat Cytosolic Pepck Mutant A467g In
Complex With Oxalate And Gtp
pdb|3MOF|B Chain B, The Structure Of Rat Cytosolic Pepck Mutant A467g In
Complex With Oxalate And Gtp
pdb|3MOH|A Chain A, The Structure Of Rat Cytosolic Pepck Mutant A467g In
Complex With Phosphoglycolate And Gdp
pdb|3MOH|B Chain B, The Structure Of Rat Cytosolic Pepck Mutant A467g In
Complex With Phosphoglycolate And Gdp
Length = 624
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 42 LRFRSRLCKEEGPGIEQFQIVGEATP--GKKLLGCGYP--LGGAHLCM 85
LR SRL KEEG E I+G P KK L +P G +L M
Sbjct: 250 LRIASRLAKEEGWLAEHMLILGITNPEGKKKYLAAAFPSACGKTNLAM 297
>pdb|1KHB|A Chain A, Pepck Complex With Nonhydrolyzable Gtp Analog, Native Data
pdb|1KHF|A Chain A, Pepck Complex With Pep
pdb|1KHG|A Chain A, Pepck
pdb|1M51|A Chain A, Pepck Complex With A Gtp-Competitive Inhibitor
pdb|1NHX|A Chain A, Pepck Complex With A Gtp-Competitive Inhibitor
pdb|2GMV|A Chain A, Pepck Complex With A Gtp-Competitive Inhibitor
pdb|2GMV|B Chain B, Pepck Complex With A Gtp-Competitive Inhibitor
Length = 625
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 42 LRFRSRLCKEEGPGIEQFQIVGEATP--GKKLLGCGYP--LGGAHLCM 85
LR SRL KEEG E ++G P KK L +P G +L M
Sbjct: 251 LRMASRLAKEEGWLAEHMLVLGITNPEGEKKYLAAAFPSACGKTNLAM 298
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,245,956
Number of Sequences: 62578
Number of extensions: 252431
Number of successful extensions: 436
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 436
Number of HSP's gapped (non-prelim): 7
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)