Query 039482
Match_columns 218
No_of_seqs 37 out of 39
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 10:06:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03144 Carbon catabolite rep 68.3 5.8 0.00013 39.7 3.7 35 96-130 171-205 (606)
2 PLN02542 fructose-1,6-bisphosp 51.2 36 0.00079 33.0 5.7 80 66-165 234-314 (412)
3 PRK09293 fructose-1,6-bisphosp 41.7 81 0.0018 29.2 6.2 74 66-159 145-219 (327)
4 PLN02628 fructose-1,6-bisphosp 39.8 1E+02 0.0022 29.3 6.7 77 66-162 167-244 (351)
5 TIGR02608 delta_60_rpt delta-6 39.0 50 0.0011 23.5 3.5 31 67-97 10-40 (55)
6 cd05829 Sortase_E Sortase E (S 34.9 2.4E+02 0.0051 22.6 7.2 50 63-112 42-95 (144)
7 PLN02262 fructose-1,6-bisphosp 32.7 92 0.002 29.3 5.2 76 67-162 158-234 (340)
8 PF01947 DUF98: Protein of unk 32.6 40 0.00086 27.6 2.5 22 196-217 124-145 (149)
9 smart00310 PTBI Phosphotyrosin 28.1 73 0.0016 25.1 3.2 30 31-60 49-78 (98)
10 PF05796 Chordopox_G2: Chordop 27.7 55 0.0012 29.6 2.7 49 27-78 99-156 (216)
11 smart00306 HintN Hint (Hedgeho 26.6 2.2E+02 0.0048 19.7 5.6 61 91-153 10-71 (100)
12 cd00354 FBPase Fructose-1,6-bi 25.7 1.4E+02 0.0031 27.5 5.0 79 66-164 138-217 (315)
13 cd00824 PTBI IRS-like phosphot 24.7 66 0.0014 25.5 2.4 32 31-62 50-81 (104)
14 PF12869 tRNA_anti-like: tRNA_ 24.6 56 0.0012 25.0 2.0 47 95-143 74-128 (144)
15 PF04360 Serglycin: Serglycin 23.0 57 0.0012 28.1 1.9 45 74-121 24-68 (150)
16 PF11006 DUF2845: Protein of u 22.8 1.4E+02 0.003 22.1 3.7 23 99-122 62-84 (87)
17 PF02201 SWIB: SWIB/MDM2 domai 21.9 68 0.0015 23.3 1.8 18 143-160 42-59 (76)
18 COG0787 Alr Alanine racemase [ 21.5 1.5E+02 0.0033 28.0 4.5 58 71-143 270-328 (360)
19 COG2087 CobU Adenosyl cobinami 21.0 71 0.0015 28.0 2.1 27 134-163 24-50 (175)
20 cd05830 Sortase_D_5 Sortase D 20.8 1.3E+02 0.0028 23.7 3.3 50 62-113 36-88 (137)
21 cd00081 Hint Hedgehog/Intein d 20.6 3.3E+02 0.0072 20.0 5.3 59 92-153 10-71 (136)
22 cd05828 Sortase_D_4 Sortase D 20.5 2E+02 0.0043 22.3 4.3 45 62-111 35-82 (127)
No 1
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=68.28 E-value=5.8 Score=39.67 Aligned_cols=35 Identities=31% Similarity=0.592 Sum_probs=29.1
Q ss_pred CeeeeecCCCceeEEEccCCCceEEEEEEEcCCCC
Q 039482 96 TKHYIKGAIEPEYVVTADDVGKLISVECIPMDDQG 130 (218)
Q Consensus 96 t~~~IeGAt~p~Y~vTADDV~~lIaVec~PmDd~~ 130 (218)
...-|+=..+..|+-|+||||..|-++|.|+|...
T Consensus 171 ~~~w~~vg~~~~y~p~~~d~g~~lk~~~~~~~~~~ 205 (606)
T PLN03144 171 GETWIEVGRSKTYTPTADDVGHVLKFECVVVDAET 205 (606)
T ss_pred CCceEEeCCCccccCChhhCCceEEEEEEEccccc
Confidence 34455555788999999999999999999998764
No 2
>PLN02542 fructose-1,6-bisphosphatase
Probab=51.23 E-value=36 Score=32.96 Aligned_cols=80 Identities=21% Similarity=0.410 Sum_probs=55.1
Q ss_pred cCCceeEEeeeecCCeeeeeEEEEEEcCCCCeeeeecCCCceeEEEccCCCceEEEEEEEcCCCCcccccceEEEee-eC
Q 039482 66 TPGKKLLGCGYPLGGAHLCMFQWVRHLQDGTKHYIKGAIEPEYVVTADDVGKLISVECIPMDDQGHMLSVENVRLMS-IQ 144 (218)
Q Consensus 66 ~pG~~L~acG~~inGttlC~FQWvRhleDGt~~~IeGAt~p~Y~vTADDV~~lIaVec~PmDd~~rk~sGelVkvfA-Nd 144 (218)
-||.++.|.||-+=|...- -|-.+.+|...+.=....=+|++|.+++. +| + + | ++|| |.
T Consensus 234 qpG~~qvAAGY~lYGpsT~---LVlt~G~GV~~FtLDp~~geFvLt~~~i~-------IP--~---~--g---~iySiN~ 293 (412)
T PLN02542 234 QPGSNLLAAGYCMYSSSVI---FVLTIGTGVFSFTLDPMYGEFVLTQENIQ-------IP--K---A--G---KIYSFNE 293 (412)
T ss_pred CcchhhhEEEEEEEccceE---EEEEECCCEEEEEEcCCCCeEEEeCCCee-------eC--C---C--C---cEeeeCc
Confidence 4999999999999543321 12345788876665555667888877651 11 1 1 3 5688 66
Q ss_pred CceeeeChhhHHHHhheeeee
Q 039482 145 PKFVTCNPEMQSEIDMHMSKG 165 (218)
Q Consensus 145 ~~kItcdpeMq~~Id~~~s~G 165 (218)
+|.=.+++.||.-|+.....|
T Consensus 294 ~N~~~W~~~~~~yi~~~~~~~ 314 (412)
T PLN02542 294 GNYQLWDDKLKKYIDDLKDPG 314 (412)
T ss_pred ccccccCHHHHHHHHHHhhCC
Confidence 777789999999999887543
No 3
>PRK09293 fructose-1,6-bisphosphatase; Provisional
Probab=41.70 E-value=81 Score=29.20 Aligned_cols=74 Identities=22% Similarity=0.367 Sum_probs=52.2
Q ss_pred cCCceeEEeeeecCCeeeeeEEEEEEcCCCCeeeeecCCCceeEEEccCCCceEEEEEEEcCCCCcccccceEEEee-eC
Q 039482 66 TPGKKLLGCGYPLGGAHLCMFQWVRHLQDGTKHYIKGAIEPEYVVTADDVGKLISVECIPMDDQGHMLSVENVRLMS-IQ 144 (218)
Q Consensus 66 ~pG~~L~acG~~inGttlC~FQWvRhleDGt~~~IeGAt~p~Y~vTADDV~~lIaVec~PmDd~~rk~sGelVkvfA-Nd 144 (218)
-||.++.|.||-+=|.+.-+ |-.+.+|...+.=....-+|+||-.++- .| + + | ++|| |.
T Consensus 145 q~G~~~vaAgy~~YG~~t~l---v~t~g~gv~~ftld~~~g~f~l~~~~i~-------ip--~---~--~---~~ys~n~ 204 (327)
T PRK09293 145 QPGNNQVAAGYVLYGPSTML---VLTTGDGVHGFTLDPSLGEFVLTHENIR-------IP--E---D--G---KEYAINE 204 (327)
T ss_pred CCchhheeEEEEEEcCceEE---EEEeCCCEEEEEEeCCCCeEEEecCCce-------eC--C---C--C---CEEccCc
Confidence 49999999999995443322 3344778776666666677888876653 11 1 2 3 5789 77
Q ss_pred CceeeeChhhHHHHh
Q 039482 145 PKFVTCNPEMQSEID 159 (218)
Q Consensus 145 ~~kItcdpeMq~~Id 159 (218)
+|.=.++|.+|+-|+
T Consensus 205 ~n~~~w~~~~~~yi~ 219 (327)
T PRK09293 205 GNQRHWEPGVKKYIE 219 (327)
T ss_pred hhhhhcCHHHHHHHH
Confidence 888888999999994
No 4
>PLN02628 fructose-1,6-bisphosphatase family protein
Probab=39.84 E-value=1e+02 Score=29.28 Aligned_cols=77 Identities=19% Similarity=0.324 Sum_probs=47.9
Q ss_pred cCCceeEEeeeecCCeeeeeEEEEEEcCCCCeeeeecCCCceeEEEccCCCceEEEEEEEcCCCCcccccceEEEee-eC
Q 039482 66 TPGKKLLGCGYPLGGAHLCMFQWVRHLQDGTKHYIKGAIEPEYVVTADDVGKLISVECIPMDDQGHMLSVENVRLMS-IQ 144 (218)
Q Consensus 66 ~pG~~L~acG~~inGttlC~FQWvRhleDGt~~~IeGAt~p~Y~vTADDV~~lIaVec~PmDd~~rk~sGelVkvfA-Nd 144 (218)
-||.++.|.||-+=|...-. |-++.+|...+.=....=+|++|-.++ +- -+.=++|| |+
T Consensus 167 q~G~~qvAAGY~lYGpsT~l---V~t~g~gv~~Ftld~~~geF~lt~~~i---------------~i--p~~g~iys~n~ 226 (351)
T PLN02628 167 QRGSRLVAAGYVLYSSATIL---CISFGSGTHGFTLDHSTGEFVLTHPDI---------------KI--PERGQIYSVND 226 (351)
T ss_pred CCccceeEEEEEEEccceEE---EEEECCCeeEEEEeCCCCEEEEeCCce---------------ee--CCCCCEeCCCC
Confidence 39999999999995443221 223466665444333333555554443 22 22225788 66
Q ss_pred CceeeeChhhHHHHhhee
Q 039482 145 PKFVTCNPEMQSEIDMHM 162 (218)
Q Consensus 145 ~~kItcdpeMq~~Id~~~ 162 (218)
.|.-.+++.+|.-|+...
T Consensus 227 ~n~~~W~~~~~~yi~~~~ 244 (351)
T PLN02628 227 ARYFDWPEGLRKYIDTVR 244 (351)
T ss_pred cccccCCHHHHHHHHHHh
Confidence 787789999999998654
No 5
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=38.99 E-value=50 Score=23.51 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=27.2
Q ss_pred CCceeEEeeeecCCeeeeeEEEEEEcCCCCe
Q 039482 67 PGKKLLGCGYPLGGAHLCMFQWVRHLQDGTK 97 (218)
Q Consensus 67 pG~~L~acG~~inGttlC~FQWvRhleDGt~ 97 (218)
|-+|+.+.|+..++.+.-.|-=+|...|||.
T Consensus 10 ~DGkIlv~G~~~~~~~~~~~~l~Rln~DGsL 40 (55)
T TIGR02608 10 SDGKILVAGYVDNSSGNNDFVLARLNADGSL 40 (55)
T ss_pred CCCcEEEEEEeecCCCcccEEEEEECCCCCc
Confidence 6789999999988767778888999999987
No 6
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=34.93 E-value=2.4e+02 Score=22.58 Aligned_cols=50 Identities=20% Similarity=0.235 Sum_probs=36.4
Q ss_pred ccccCC--ceeEEeeeecCCeeeeeEEEEEEcCCCCeeeeecCC--CceeEEEc
Q 039482 63 GEATPG--KKLLGCGYPLGGAHLCMFQWVRHLQDGTKHYIKGAI--EPEYVVTA 112 (218)
Q Consensus 63 Gea~pG--~~L~acG~~inGttlC~FQWvRhleDGt~~~IeGAt--~p~Y~vTA 112 (218)
+-+.|| +.....||....-....|..+..++-|..-+|..+. .-+|.|+.
T Consensus 42 ~~~~pG~~Gn~viaGH~~~~g~~~~F~~L~~l~~GD~I~v~~~~g~~~~Y~V~~ 95 (144)
T cd05829 42 GGPKPGEKGTAVLAGHVDSRGGPAVFFRLGDLRKGDKVEVTRADGQTATFRVDR 95 (144)
T ss_pred CCCCCCCCCCEEEEEecCCCCCChhhcchhcCCCCCEEEEEECCCCEEEEEEeE
Confidence 344444 456677887642256789999999999999999854 47787765
No 7
>PLN02262 fructose-1,6-bisphosphatase
Probab=32.70 E-value=92 Score=29.27 Aligned_cols=76 Identities=16% Similarity=0.291 Sum_probs=49.2
Q ss_pred CCceeEEeeeecCCeeeeeEEEEEEcCCCCeeeeecCCCceeEEEccCCCceEEEEEEEcCCCCcccccceEEEee-eCC
Q 039482 67 PGKKLLGCGYPLGGAHLCMFQWVRHLQDGTKHYIKGAIEPEYVVTADDVGKLISVECIPMDDQGHMLSVENVRLMS-IQP 145 (218)
Q Consensus 67 pG~~L~acG~~inGttlC~FQWvRhleDGt~~~IeGAt~p~Y~vTADDV~~lIaVec~PmDd~~rk~sGelVkvfA-Nd~ 145 (218)
||.++.|.||-+=|.+.-. |-...+|...+.=....=+|++|..++ +- -+.=++|| |.+
T Consensus 158 ~G~~qvAAGY~lYG~~T~l---V~t~g~gv~~Ftld~~~gef~lt~~~i---------------~i--p~~~~~ys~N~~ 217 (340)
T PLN02262 158 PGKEMVAAGYCMYGSSCTL---VLSTGGGVNGFTLDPSLGEFILTHPDI---------------KI--PKKGKIYSVNEG 217 (340)
T ss_pred chHhhhheeeeeecCceEE---EEEeCCCeeEEEEcCCCCEEEEeCCCc---------------ee--CCCCCEeccCcc
Confidence 9999999999995544433 233366766555444445666665554 11 12225788 557
Q ss_pred ceeeeChhhHHHHhhee
Q 039482 146 KFVTCNPEMQSEIDMHM 162 (218)
Q Consensus 146 ~kItcdpeMq~~Id~~~ 162 (218)
|.=.++|.+|.-|+...
T Consensus 218 n~~~w~~~~~~yi~~~~ 234 (340)
T PLN02262 218 NAKNWDGPTAKYVEKCK 234 (340)
T ss_pred chhhcCHHHHHHHHHHh
Confidence 66678999999998765
No 8
>PF01947 DUF98: Protein of unknown function (DUF98); InterPro: IPR002800 This entry represents a group of proteins with no known function.; PDB: 2NWI_A.
Probab=32.64 E-value=40 Score=27.55 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=18.3
Q ss_pred ceEEEEcCccceEEeeeecccC
Q 039482 196 SFQIKINSTEYVVIEEKFTIRL 217 (218)
Q Consensus 196 gY~Ik~~~~~~vvI~EKfs~~l 217 (218)
.|.|-.++.--.+|.|+|+++|
T Consensus 124 ~Y~i~~~~~pl~~I~E~F~~~L 145 (149)
T PF01947_consen 124 TYRIIHNGKPLMVITEVFPPAL 145 (149)
T ss_dssp EEEEEETTEEEEEEEEEEEG--
T ss_pred EEEEEECCEEEEEEEEECCccc
Confidence 5999999888899999999987
No 9
>smart00310 PTBI Phosphotyrosine-binding domain (IRS1-like).
Probab=28.06 E-value=73 Score=25.12 Aligned_cols=30 Identities=30% Similarity=0.345 Sum_probs=26.9
Q ss_pred ceecccCccceEEeeecccCCCCCCeeeeE
Q 039482 31 TVMNHGNPKNKLRFRSRLCKEEGPGIEQFQ 60 (218)
Q Consensus 31 tv~~~~~~k~~~~~~~~~d~dplPgIeglq 60 (218)
.+--||-.++.|+|+++--....||+--||
T Consensus 49 ~lRRyG~~~~~FsfEaGRrc~tG~G~f~f~ 78 (98)
T smart00310 49 SLRRYGRDKNFFFFEAGRRCVSGPGEFTFQ 78 (98)
T ss_pred HeeeecCCCCEEEEEccCcCCCCCCEEEEE
Confidence 455689999999999999999999999998
No 10
>PF05796 Chordopox_G2: Chordopoxvirus protein G2; InterPro: IPR008446 This family consists of several Chordopoxvirus isatin-beta-thiosemicarbazone dependent protein (protein G2) sequences. Inactivation of the gene coding for this protein renders the virus dependent upon isatin-beta-thiosemicarbazone (IBT) for growth [].
Probab=27.66 E-value=55 Score=29.61 Aligned_cols=49 Identities=24% Similarity=0.404 Sum_probs=33.5
Q ss_pred ecccceecccCccceEEeeeccc-------CCCCCCeeeeEEec--cccCCceeEEeeeec
Q 039482 27 DMRGTVMNHGNPKNKLRFRSRLC-------KEEGPGIEQFQIVG--EATPGKKLLGCGYPL 78 (218)
Q Consensus 27 ~~~~tv~~~~~~k~~~~~~~~~d-------~dplPgIeglqI~G--ea~pG~~L~acG~~i 78 (218)
+|.|.|... .|.++.++..| .+=.|.|.-..+.| +..+|.++..|||+-
T Consensus 99 ~m~Giaivk---~~~V~v~~aNd~ll~fl~k~Y~P~iY~Y~~~~~p~~~~GskiilCG~~~ 156 (216)
T PF05796_consen 99 SMKGIAIVK---DRNVYVRRANDELLDFLFKEYNPQIYRYVEEDKPSSIIGSKIILCGYDK 156 (216)
T ss_pred ccCcEEEEc---CCEEEEEcCCHHHHHHHHHhcCchheEEeccCCCccCCCcEEEEecCCc
Confidence 688988883 34455433211 13469999999944 457899999999974
No 11
>smart00306 HintN Hint (Hedgehog/Intein) domain N-terminal region. Hedgehog/Intein domain, N-terminal region. Domain has been split to accommodate large insertions of endonucleases.
Probab=26.61 E-value=2.2e+02 Score=19.66 Aligned_cols=61 Identities=15% Similarity=0.069 Sum_probs=32.3
Q ss_pred EcCCCCeeeeecCCCceeEEEccCCCceEEEEEEE-cCCCCcccccceEEEeeeCCceeeeChh
Q 039482 91 HLQDGTKHYIKGAIEPEYVVTADDVGKLISVECIP-MDDQGHMLSVENVRLMSIQPKFVTCNPE 153 (218)
Q Consensus 91 hleDGt~~~IeGAt~p~Y~vTADDV~~lIaVec~P-mDd~~rk~sGelVkvfANd~~kItcdpe 153 (218)
.+.||....|+.-..-.+++|.|.-..-+ ...+ .....+.-.++..++-..+++.|.|-|+
T Consensus 10 ~~~~gg~~~i~~l~~g~~V~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~g~~i~~T~~ 71 (100)
T smart00306 10 LTEDGGIKKIEELEEGDKVLALDEGTLKY--SPVKVFLVREPKGEKKFYRIKTENGREITLTPD 71 (100)
T ss_pred EcCCCCEEEHHHcCCCCEEEEecCCCcEE--EEEEEEEEEcCCcceeEEEEEECCCCEEEECCC
Confidence 45565556777555556777766522211 1112 1111222225677777777788877664
No 12
>cd00354 FBPase Fructose-1,6-bisphosphatase, an enzyme that catalyzes the hydrolysis of fructose-1,6-biphosphate into fructose-6-phosphate and is critical in gluconeogenesis pathway. The alignment model also includes chloroplastic FBPases and sedoheptulose-1,7-biphosphatases that play a role in pentose phosphate pathway (Calvin cycle).
Probab=25.75 E-value=1.4e+02 Score=27.51 Aligned_cols=79 Identities=19% Similarity=0.331 Sum_probs=51.0
Q ss_pred cCCceeEEeeeecCCeeeeeEEEEEEcCCCCeeeeecCCCceeEEEccCCCceEEEEEEEcCCCCcccccceEEEee-eC
Q 039482 66 TPGKKLLGCGYPLGGAHLCMFQWVRHLQDGTKHYIKGAIEPEYVVTADDVGKLISVECIPMDDQGHMLSVENVRLMS-IQ 144 (218)
Q Consensus 66 ~pG~~L~acG~~inGttlC~FQWvRhleDGt~~~IeGAt~p~Y~vTADDV~~lIaVec~PmDd~~rk~sGelVkvfA-Nd 144 (218)
-||.++.|.||-+=|..... |-.+.+|+..+.=....-+|++|-.++. +.++ | ++|| |.
T Consensus 138 q~G~~~vAAgy~lYGp~T~l---v~t~g~gv~~ftld~~~g~f~lt~~~~~---------ip~~-----~---~~ys~n~ 197 (315)
T cd00354 138 QPGRNQVAAGYALYGPSTML---VLTLGQGVHGFTLDPSLGEFILTHPNVK---------IPKK-----G---KIYSINE 197 (315)
T ss_pred CcchhhheEEEEEEcCceEE---EEEeCCceEEEEEcCCCCeEEEecCCce---------eCCC-----C---CEECCCC
Confidence 48999999999995443332 2344577776655554556777655421 1111 2 4688 53
Q ss_pred CceeeeChhhHHHHhheeee
Q 039482 145 PKFVTCNPEMQSEIDMHMSK 164 (218)
Q Consensus 145 ~~kItcdpeMq~~Id~~~s~ 164 (218)
+|.=.++|.||.-|+..+..
T Consensus 198 ~n~~~w~~~~~~yi~~~~~~ 217 (315)
T cd00354 198 GNYRYWDEPVKKYIDDCKAG 217 (315)
T ss_pred cchhcCCHHHHHHHHHHhcc
Confidence 55556999999999988763
No 13
>cd00824 PTBI IRS-like phosphotyrosine-binding domain. IRS-like phosphotyrosine-binding domain (PTBi); This domain has a PH-like fold and is found in insulin receptor substrate molecules and in other eukaryotic signaling molecules such as FRS2 and Dok. IRS and Dok molecules have an N-terminal PH domain, which is followed by an IRS-like PTB domain. FRS2 just has an N-terminal PTBi domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=24.73 E-value=66 Score=25.46 Aligned_cols=32 Identities=25% Similarity=0.225 Sum_probs=28.1
Q ss_pred ceecccCccceEEeeecccCCCCCCeeeeEEe
Q 039482 31 TVMNHGNPKNKLRFRSRLCKEEGPGIEQFQIV 62 (218)
Q Consensus 31 tv~~~~~~k~~~~~~~~~d~dplPgIeglqI~ 62 (218)
.+--||-.++.|.|+++--..-.||+--||..
T Consensus 50 ~lRRyG~~~~~FsfEaGRrc~tG~G~f~f~t~ 81 (104)
T cd00824 50 FLRRYGYDSNLFSFEAGRRCVTGEGIFTFQTD 81 (104)
T ss_pred HeeecccCCCEEEEEccCcCCCCCCEEEEEcC
Confidence 44568888999999999999999999999976
No 14
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [].; PDB: 3F1Z_I.
Probab=24.64 E-value=56 Score=25.00 Aligned_cols=47 Identities=26% Similarity=0.314 Sum_probs=28.7
Q ss_pred CCeeeeecCCCceeEEEccCCCceEEEEEEEcCCC--------CcccccceEEEeee
Q 039482 95 GTKHYIKGAIEPEYVVTADDVGKLISVECIPMDDQ--------GHMLSVENVRLMSI 143 (218)
Q Consensus 95 Gt~~~IeGAt~p~Y~vTADDV~~lIaVec~PmDd~--------~rk~sGelVkvfAN 143 (218)
|++..|+--....|++..++.+....|.|.--++. -.+ |..|++...
T Consensus 74 G~V~~I~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~--G~~Vti~G~ 128 (144)
T PF12869_consen 74 GTVSSIDKGFGDNYVVLLGTENGFAGVQCYFSNDQEKRASVAKLKK--GQKVTIKGI 128 (144)
T ss_dssp EEEEEEEE-STT-EEEEEE-TT-S-S--EEEEEEGGGHHHHHH--T--TSEEEEEEE
T ss_pred EEEEEEEEcCCCcEEEEccCCCCceeEEEEEccchhhhhhHhcCCC--CCEEEEEEE
Confidence 66777765566777888888888888999877777 445 888887653
No 15
>PF04360 Serglycin: Serglycin ; InterPro: IPR007455 Serglycin is the most prevalent proteoglycan produced in haemopoietic cells. Serglycin is a proteinase resistant secretory granule proteoglycan [].
Probab=22.99 E-value=57 Score=28.12 Aligned_cols=45 Identities=18% Similarity=0.321 Sum_probs=31.9
Q ss_pred eeeecCCeeeeeEEEEEEcCCCCeeeeecCCCceeEEEccCCCceEEE
Q 039482 74 CGYPLGGAHLCMFQWVRHLQDGTKHYIKGAIEPEYVVTADDVGKLISV 121 (218)
Q Consensus 74 cG~~inGttlC~FQWvRhleDGt~~~IeGAt~p~Y~vTADDV~~lIaV 121 (218)
-|||.. --.+||||..+|+--..----+.|-+.|-.++-+.++..
T Consensus 24 qG~P~r---rArYqWVrC~PDsnsANCieEKGP~FdL~pGesnrI~pp 68 (150)
T PF04360_consen 24 QGAPAR---RARYQWVRCNPDSNSANCIEEKGPLFDLLPGESNRILPP 68 (150)
T ss_pred ccCcch---hcceeEEecCCCCCCCccccccCCceecCCCccccCCCC
Confidence 466764 237999999999965444456788888877766666543
No 16
>PF11006 DUF2845: Protein of unknown function (DUF2845); InterPro: IPR021268 This bacterial family of proteins has no known function.
Probab=22.84 E-value=1.4e+02 Score=22.14 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=13.6
Q ss_pred eeecCCCceeEEEccCCCceEEEE
Q 039482 99 YIKGAIEPEYVVTADDVGKLISVE 122 (218)
Q Consensus 99 ~IeGAt~p~Y~vTADDV~~lIaVe 122 (218)
|--|.....|.|+..| ++|+.|+
T Consensus 62 Yn~Gp~~~~~~l~f~~-Gkl~~I~ 84 (87)
T PF11006_consen 62 YNFGPNGFMQILTFEN-GKLVRIE 84 (87)
T ss_pred EeCCCCCcEEEEEEEC-CEEEEEE
Confidence 3336777777777665 4555443
No 17
>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []. The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain. The SWIB and MDM2 domains are homologous and share a common fold.; GO: 0005515 protein binding; PDB: 1V31_A 3FE7_A 3JZQ_B 3EQY_B 2VYR_A 3JZO_A 3DAB_E 3LBJ_E 3FEA_A 3FDO_A ....
Probab=21.89 E-value=68 Score=23.25 Aligned_cols=18 Identities=6% Similarity=0.373 Sum_probs=14.3
Q ss_pred eCCceeeeChhhHHHHhh
Q 039482 143 IQPKFVTCNPEMQSEIDM 160 (218)
Q Consensus 143 Nd~~kItcdpeMq~~Id~ 160 (218)
+|.+.|.||..++..+..
T Consensus 42 ~~k~~I~cD~~L~~lf~~ 59 (76)
T PF02201_consen 42 KDKRIIICDEKLKKLFGK 59 (76)
T ss_dssp SSTTEEE-TTSHHHHHHT
T ss_pred ccCceEecCHHHHHHhCC
Confidence 678899999999988765
No 18
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=21.52 E-value=1.5e+02 Score=28.04 Aligned_cols=58 Identities=29% Similarity=0.434 Sum_probs=45.4
Q ss_pred eEEeeeecCCeeeeeEEEEEEcCCCCeeeeecCCCceeE-EEccCCCceEEEEEEEcCCCCcccccceEEEeee
Q 039482 71 LLGCGYPLGGAHLCMFQWVRHLQDGTKHYIKGAIEPEYV-VTADDVGKLISVECIPMDDQGHMLSVENVRLMSI 143 (218)
Q Consensus 71 L~acG~~inGttlC~FQWvRhleDGt~~~IeGAt~p~Y~-vTADDV~~lIaVec~PmDd~~rk~sGelVkvfAN 143 (218)
..++||-.+ |.|++.+|+.-.|.|-.-|--= |+-| .+.|++.+.. +-+. |+.|.+|-+
T Consensus 270 vv~iGYaDG--------~pR~~~~~~~Vli~G~r~pivGrVsMD----~~~Vdl~~~~-~~~~--Gd~V~L~G~ 328 (360)
T COG0787 270 VVAIGYADG--------YPRALSNGTPVLINGKRVPIVGRVSMD----MIMVDLTDLP-QVKV--GDEVELFGE 328 (360)
T ss_pred EEeccccCC--------chhhcCCCCEEEECCEEeeEeeEEeee----eEEEECCCCC-CCCC--CCEEEEECC
Confidence 467888888 9999999998899998888643 5544 5666766666 5667 999999988
No 19
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=21.04 E-value=71 Score=28.04 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=20.6
Q ss_pred ccceEEEeeeCCceeeeChhhHHHHhheee
Q 039482 134 SVENVRLMSIQPKFVTCNPEMQSEIDMHMS 163 (218)
Q Consensus 134 sGelVkvfANd~~kItcdpeMq~~Id~~~s 163 (218)
||..|.-+|.-+-+ |+|||+.|..|-.
T Consensus 24 ~~~~v~YvAT~~a~---D~Em~~RI~~Hr~ 50 (175)
T COG2087 24 SGGQVLYVATGRAF---DDEMQERIAHHRA 50 (175)
T ss_pred hCCceEEEEecCCC---CHHHHHHHHHHHh
Confidence 35566667776665 9999999998865
No 20
>cd05830 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5 represented by Streptomyces avermitilis SAV4337. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=20.82 E-value=1.3e+02 Score=23.68 Aligned_cols=50 Identities=22% Similarity=0.166 Sum_probs=36.0
Q ss_pred eccccCC--ceeEEeeeecCCeeeeeEEEEEEcCCCCeeeeec-CCCceeEEEcc
Q 039482 62 VGEATPG--KKLLGCGYPLGGAHLCMFQWVRHLQDGTKHYIKG-AIEPEYVVTAD 113 (218)
Q Consensus 62 ~Gea~pG--~~L~acG~~inGttlC~FQWvRhleDGt~~~IeG-At~p~Y~vTAD 113 (218)
.|-+.|| +.....||-..- ..+|..+.+++.|..-++.. -...+|.|++=
T Consensus 36 ~~s~~pG~~gn~viaGH~~~~--~~~F~~L~~l~~Gd~i~v~~~~~~~~Y~V~~~ 88 (137)
T cd05830 36 PETAMPGEVGNFAVAGHRTTY--GAPFNDLDKLRPGDKIVVETADGWYTYVVRSS 88 (137)
T ss_pred cCCCCCCCCCcEEEEecCCCC--CcccccHhhCCCCCEEEEEECCeEEEEEEeEE
Confidence 4456665 567778888642 35899999999999999984 34467777653
No 21
>cd00081 Hint Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a protein, and the flanking polypeptide sequences - the exteins - are joined by a peptide bond. In addition to the autocatalytic splicing domain, many inteins contain an inserted endonuclease domain, which plays a role in spreading inteins. Hedgehog proteins are a major class of intercellular signaling molecules, which control inductive interactions during animal development. The mature signaling forms of hedgehog proteins are the N-terminal fragments, which are covalently linked to cholesterol at their C-termini. This modification is the result of an autoprocessing step catalyzed by the C-terminal fragments, which are aligned here.
Probab=20.60 E-value=3.3e+02 Score=19.95 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=34.8
Q ss_pred cCCCCeeeeecCCC--ceeEEEccCCCceEEEEEEEcCCCCcc-cccceEEEeeeCCceeeeChh
Q 039482 92 LQDGTKHYIKGAIE--PEYVVTADDVGKLISVECIPMDDQGHM-LSVENVRLMSIQPKFVTCNPE 153 (218)
Q Consensus 92 leDGt~~~IeGAt~--p~Y~vTADDV~~lIaVec~PmDd~~rk-~sGelVkvfANd~~kItcdpe 153 (218)
.+||....|+.-.. ...+++.|+-++ ++..|+..-.+. -.++..++-..+++.|.|-|+
T Consensus 10 ~~d~~~~~i~~l~~~~g~~V~~~d~~~~---~~~~~v~~~~~~~~~~~~~~i~~~~g~~l~~T~~ 71 (136)
T cd00081 10 LEDGGRKKIEELVEKKGDKVLALDETGK---LVFSKVLKVLRRDYEKKFYKIKTESGREITLTPD 71 (136)
T ss_pred eccCcEEEhHHhhhccCCEEEEECCCCC---EEEEEeeEEEEEcCCCcEEEEEECCCcEEEEcCC
Confidence 44556667776665 677888887333 233343322211 126778888888888877654
No 22
>cd05828 Sortase_D_4 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-4. These sortases recognize a unique sorting signal (LPXTA) and they constitute a specialized sorting pathway found in bacilli. Their substrates are predicted to be predominantly enzymes such as 5'-nucleotidases, glycosyl hydrolase, and subtilase.
Probab=20.50 E-value=2e+02 Score=22.27 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=32.3
Q ss_pred eccccCC--ceeEEeeeecCCeeeeeEEEEEEcCCCCeeeeecC-CCceeEEE
Q 039482 62 VGEATPG--KKLLGCGYPLGGAHLCMFQWVRHLQDGTKHYIKGA-IEPEYVVT 111 (218)
Q Consensus 62 ~Gea~pG--~~L~acG~~inGttlC~FQWvRhleDGt~~~IeGA-t~p~Y~vT 111 (218)
-+.+.|| +.....||-. ..|.-+.+|+.|..-++..+ ...+|.|+
T Consensus 35 ~~~~~pg~~gn~vIaGH~~-----~~F~~L~~l~~Gd~i~v~~~~~~~~Y~V~ 82 (127)
T cd05828 35 AGSALPGEGGNIVIAGHRD-----THFRFLGELEPGDIITLQTLGGTYTYRVT 82 (127)
T ss_pred cCCCCCCCCCcEEEEEeCc-----hhhhChhcCCCCCEEEEEECCEEEEEEEe
Confidence 4566675 5677788864 58999999999999999866 22445444
Done!