Query 039482
Match_columns 218
No_of_seqs 37 out of 39
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 17:18:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039482.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039482hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dix_A Plectin-related protein 99.9 2E-26 7E-31 199.2 14.3 146 59-217 15-163 (230)
2 2in0_A Endonuclease PI-MTUI; h 53.4 27 0.00092 25.8 5.4 63 88-153 7-72 (139)
3 3ray_A PR domain-containing pr 36.1 42 0.0014 28.9 4.6 137 57-196 84-236 (237)
4 2imz_A Endonuclease PI-MTUI; N 34.5 50 0.0017 24.9 4.4 63 88-153 7-72 (168)
5 1at0_A 17-hedgehog; developmen 33.4 1.1E+02 0.0039 23.1 6.3 63 91-153 9-71 (145)
6 3cnu_A Predicted coding region 29.2 55 0.0019 23.0 3.6 65 87-163 40-108 (116)
7 3dgp_B RNA polymerase II trans 23.0 29 0.00099 25.1 1.1 30 143-173 4-33 (71)
8 3v3l_A E3 ubiquitin-protein li 20.3 49 0.0017 23.8 1.9 38 137-174 5-42 (85)
9 1ydl_A TFIIH, general transcri 18.9 51 0.0018 24.3 1.8 16 145-160 15-30 (79)
10 3rob_A Uncharacterized conserv 17.2 2.4E+02 0.0083 20.7 5.2 49 56-104 80-134 (139)
No 1
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}
Probab=99.94 E-value=2e-26 Score=199.20 Aligned_cols=146 Identities=19% Similarity=0.303 Sum_probs=132.0
Q ss_pred eEEeccccCCceeEEeeeec--CCeeeeeEEEEEEc-CCCCeeeeecCCCceeEEEccCCCceEEEEEEEcCCCCccccc
Q 039482 59 FQIVGEATPGKKLLGCGYPL--GGAHLCMFQWVRHL-QDGTKHYIKGAIEPEYVVTADDVGKLISVECIPMDDQGHMLSV 135 (218)
Q Consensus 59 lqI~Gea~pG~~L~acG~~i--nGttlC~FQWvRhl-eDGt~~~IeGAt~p~Y~vTADDV~~lIaVec~PmDd~~rk~sG 135 (218)
+.+-|.-..|.-|+..--+. ---++|+|||+|++ ++|+++.|.||+.|.|..+++|||.+|+++|.| . |
T Consensus 15 y~L~G~e~LGs~L~i~~~~~~~~dlS~CsiQW~R~~~egs~re~IsGAtk~~YAPeP~DVGrlLqadi~~------~--G 86 (230)
T 4dix_A 15 YEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELISGATKSVYAPEPFDVGRVLHADIIY------D--G 86 (230)
T ss_dssp EEEESCCBTTSCEEEEESSTTSCCGGGSEEEEEEECTTSSSEEECTTCCSSEECCCGGGBTSEEEEEEEE------T--T
T ss_pred eeecchhhccceEEEEeccCCCCcccccceEEEEeecCCCceeEEeccccccccCCccccccEEEEEEec------C--C
Confidence 45567788888887765544 34689999999999 579999999999999999999999999999998 3 8
Q ss_pred ceEEEeeeCCceeeeChhhHHHHhheeeeeEEEEEEEeecCCccCcCCCCCCeEEEEeecceEEEEcCccceEEeeeecc
Q 039482 136 ENVRLMSIQPKFVTCNPEMQSEIDMHMSKGEASFSVLLLVPSSENQGPVTLPATLILRRSSFQIKINSTEYVVIEEKFTI 215 (218)
Q Consensus 136 elVkvfANd~~kItcdpeMq~~Id~~~s~G~Asf~V~ll~~~~d~WE~~~~pATL~lkR~gY~Ik~~~~~~vvI~EKfs~ 215 (218)
+.+.+|++ .+|.|+|+|++.|++++.+|.+.|.|.++....+.||. +++++|.+-.|.||......+++.|+||+
T Consensus 87 ~k~t~~T~--gpId~a~GL~~yVEaL~rk~~tEFNVvv~q~nG~d~~s---~sihvl~vgk~RiKL~kg~~t~akE~YSs 161 (230)
T 4dix_A 87 HSLSLSTV--GKIDPAAGLGSYVEALVRKHDVDFNVVVTQMSGEDHTS---ESIHLFHVGKMRIKLCKGKTVIAKEYYSS 161 (230)
T ss_dssp EEEEEEEE--EEBBCCTTHHHHHHHHHTTSEEEEEEEEEEETTEECCC---CCEEEEEEESSEEEEEETTEEEEEEECCT
T ss_pred cEEEEEec--CCCCCCchhHHHHHHHhhcCCCcEEEEEEEEcCccCcc---ceEEEEEeccEEEEEecCceEEeeeeecc
Confidence 89999999 89999999999999999999999999999999999994 49999999999999998888999999998
Q ss_pred cC
Q 039482 216 RL 217 (218)
Q Consensus 216 ~l 217 (218)
.+
T Consensus 162 sm 163 (230)
T 4dix_A 162 AM 163 (230)
T ss_dssp TC
T ss_pred cc
Confidence 64
No 2
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=53.42 E-value=27 Score=25.75 Aligned_cols=63 Identities=24% Similarity=0.261 Sum_probs=43.3
Q ss_pred EEEEcCCCCeeeeecC---CCceeEEEccCCCceEEEEEEEcCCCCcccccceEEEeeeCCceeeeChh
Q 039482 88 WVRHLQDGTKHYIKGA---IEPEYVVTADDVGKLISVECIPMDDQGHMLSVENVRLMSIQPKFVTCNPE 153 (218)
Q Consensus 88 WvRhleDGt~~~IeGA---t~p~Y~vTADDV~~lIaVec~PmDd~~rk~sGelVkvfANd~~kItcdpe 153 (218)
+|-.++||+...|+-- .....+++.|.=+.+..-.+.-.-+++. .+++++-..+++.|+|-|+
T Consensus 7 ~V~~~~~G~~~~I~~l~~~~~gd~V~s~d~~g~~~~~~v~~~~~~~~---~~~~~i~t~~G~~i~~T~~ 72 (139)
T 2in0_A 7 RIFDPVTGTTHRIEDVVDGRKPIHVVAAAKDGTLHARPVVSWFDQGT---RDVIGLRIAGGAILWATPD 72 (139)
T ss_dssp EEECTTTCCEEEHHHHHHTTCCCEEEEECTTSCEEEEEEEEEEEEEE---EEEEEEEETTSCEEEECTT
T ss_pred EEEECCCCCEEEHHHhhCccCCCEEEEECCCCCEEEEEEEEEEEcCC---cEEEEEEeCCCCEEEecCC
Confidence 4556789987788866 5567788887556665444443333443 4788888888999998775
No 3
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}
Probab=36.05 E-value=42 Score=28.86 Aligned_cols=137 Identities=18% Similarity=0.204 Sum_probs=48.2
Q ss_pred eeeEEeccccCCceeEE--eeeec-CCeeeeeEEEEEEcCCCCeeeeecCCC-----ceeEEEccC--CCceEEEEEE--
Q 039482 57 EQFQIVGEATPGKKLLG--CGYPL-GGAHLCMFQWVRHLQDGTKHYIKGAIE-----PEYVVTADD--VGKLISVECI-- 124 (218)
Q Consensus 57 eglqI~Gea~pG~~L~a--cG~~i-nGttlC~FQWvRhleDGt~~~IeGAt~-----p~Y~vTADD--V~~lIaVec~-- 124 (218)
.|+-.+.+++|=++..+ .|-.+ .-.....|-|--...+|...+|+|... -.|+=.|.+ -.+|+|+...
T Consensus 84 ~Gv~~~~~~IpkGt~fGPY~Ge~~s~~ea~~~y~wei~~~~g~~~~IDgsde~~gNWmRfVn~Ar~~~EqNL~A~q~~~~ 163 (237)
T 3ray_A 84 SDVRCVNEVIPKGHIFGPYEGQISTQDKSAGFFSWLIVDKNNRYKSIDGSDETKANWMRYVVISREEREQNLLAFQHSER 163 (237)
T ss_dssp EEEEECSSCBCTTEEECCCCSEEECC-----CCEEEEECTTSCEEEEECCCTTTSCGGGGCEECCCTTTCCEEEEEETTE
T ss_pred cceEEEeCcCCCCCEEEecccEEcChHHccccceEEEEcCCCcEEEEecCCCCCCcceeEEEcCCCcccccceeEEeCCE
Confidence 56666666666544321 11111 112235688998999998889998752 268888764 3678887651
Q ss_pred ----EcCCCCcccccceEEEeeeCCceeeeChhhHHHHhheeeeeEEEEEEEeecCCccCcCCCCCCeEEEEeecc
Q 039482 125 ----PMDDQGHMLSVENVRLMSIQPKFVTCNPEMQSEIDMHMSKGEASFSVLLLVPSSENQGPVTLPATLILRRSS 196 (218)
Q Consensus 125 ----PmDd~~rk~sGelVkvfANd~~kItcdpeMq~~Id~~~s~G~Asf~V~ll~~~~d~WE~~~~pATL~lkR~g 196 (218)
-.. ..+. |++..|.-.+.-.-..+-.-++.|+.++.+|.+..+=.-...-+|+.|.++-|..|.+-|.|
T Consensus 164 Iyy~a~R-dI~p--GeELlVwYg~~Y~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (237)
T 3ray_A 164 IYFRACR-DIRP--GEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQG 236 (237)
T ss_dssp EEEEESS-CBCT--TCBCEEEECHHHHHHHCC--------------------------------------------
T ss_pred EEEEEcc-ccCC--CCEEEEeeCHHHHHHhcccccchhcccccchhhcccccCccccccChhhcCCceEEEeeccC
Confidence 111 1223 55555443332222222234667889999999988777777788999998888888877655
No 4
>2imz_A Endonuclease PI-MTUI; N-terminal cysteine sulfinic acid C-terminal aminosuccinimide, hydrolase; 1.70A {Mycobacterium tuberculosis}
Probab=34.46 E-value=50 Score=24.89 Aligned_cols=63 Identities=24% Similarity=0.290 Sum_probs=39.1
Q ss_pred EEEEcCCCCeeeeecCC---CceeEEEccCCCceEEEEEEEcCCCCcccccceEEEeeeCCceeeeChh
Q 039482 88 WVRHLQDGTKHYIKGAI---EPEYVVTADDVGKLISVECIPMDDQGHMLSVENVRLMSIQPKFVTCNPE 153 (218)
Q Consensus 88 WvRhleDGt~~~IeGAt---~p~Y~vTADDV~~lIaVec~PmDd~~rk~sGelVkvfANd~~kItcdpe 153 (218)
||...+||+...|+.-. ...-+++.|.=+++..-.+.-.-+++. .+++++-..+++.|+|-|+
T Consensus 7 ~V~~~~~G~~~~I~el~~~~~~~~V~~~d~~g~~~~~~v~~~~~~~~---~~~~~i~t~~G~~i~~T~~ 72 (168)
T 2imz_A 7 RIFDPVTGTTHRIEDVVDGRKPIHVVAAAKDGTLHARPVVSWFDQGT---RDVIGLRIAGGAILWATPD 72 (168)
T ss_dssp EEECTTTCCEEEHHHHHHTTCCCEEEEECTTSCEEEEEEEEEEEEEE---EEEEEEEETTSCEEEECTT
T ss_pred EEEECCCCcEEEHHHhhCccCCCEEEEECCCCCEEEEEeeeEEEcCC---ceEEEEEeCCCCEEEEcCC
Confidence 55555788766666322 245677776556665444443334443 4778888888888888775
No 5
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=33.39 E-value=1.1e+02 Score=23.13 Aligned_cols=63 Identities=17% Similarity=0.166 Sum_probs=41.4
Q ss_pred EcCCCCeeeeecCCCceeEEEccCCCceEEEEEEEcCCCCcccccceEEEeeeCCceeeeChh
Q 039482 91 HLQDGTKHYIKGAIEPEYVVTADDVGKLISVECIPMDDQGHMLSVENVRLMSIQPKFVTCNPE 153 (218)
Q Consensus 91 hleDGt~~~IeGAt~p~Y~vTADDV~~lIaVec~PmDd~~rk~sGelVkvfANd~~kItcdpe 153 (218)
+++||.+..|+--.--+.+++.|+=+.+..-++.=+-++...-....+++-..+++.|+.-|.
T Consensus 9 ~~~~G~~k~i~eL~~GD~Vla~d~~G~~~~s~V~~~~~r~~~~~~~f~~I~t~~g~~L~lTp~ 71 (145)
T 1at0_A 9 LLESGVRKPLGELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHTDGGAVLTVTPA 71 (145)
T ss_dssp EBTTSCEEEGGGCCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEEEEETTSCEEEECTT
T ss_pred EeCCCCEeEHHHcCCCCEEEEECCCCCEEEEEEEEEEeeCCCcceeEEEEEECCCCEEEEeCC
Confidence 578899888888777788999986677654444433332221125677777777788776654
No 6
>3cnu_A Predicted coding region AF_1534; structural GE MCSG, PSI-2, protein structure initiative, midwest center F structural genomics; 1.90A {Archaeoglobus fulgidus dsm 4304} PDB: 3bn8_A*
Probab=29.16 E-value=55 Score=22.98 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=39.1
Q ss_pred EEEEEc-CCCCeeeeecC-CCceeEEEccC--CCceEEEEEEEcCCCCcccccceEEEeeeCCceeeeChhhHHHHhhee
Q 039482 87 QWVRHL-QDGTKHYIKGA-IEPEYVVTADD--VGKLISVECIPMDDQGHMLSVENVRLMSIQPKFVTCNPEMQSEIDMHM 162 (218)
Q Consensus 87 QWvRhl-eDGt~~~IeGA-t~p~Y~vTADD--V~~lIaVec~PmDd~~rk~sGelVkvfANd~~kItcdpeMq~~Id~~~ 162 (218)
+|.-++ ++|...+.+|. ..|+.++|+++ ...+++ |.. .....|....-+|.-|...-..+...+
T Consensus 40 ~~~l~l~~~G~~~~~~~~~~~ad~tl~~~~~~~~~l~~---------g~~---~~~~a~~~gklki~Gd~~~~~~l~~ll 107 (116)
T 3cnu_A 40 EFYVEYKSDGTCEFKEGVHSSPTFTVVAPPDFWLAVLK---------GQE---DPVSGFMMGKYRIEGNIMEAQRLAGVI 107 (116)
T ss_dssp EEEEEECTTSCEEEEESCCSSCSEEEECCHHHHHHHHT---------TSS---CHHHHHHHTSSEEECCHHHHHHHHHHH
T ss_pred EEEEEEccCCeEEEcCCCCCCCCEEEEEeHHHHHHHHc---------CCC---CHHHHHHcCCEEEEcCHHHHHHHHHHH
Confidence 688889 99998877774 57888888776 333321 111 112344555567777766554444444
Q ss_pred e
Q 039482 163 S 163 (218)
Q Consensus 163 s 163 (218)
.
T Consensus 108 ~ 108 (116)
T 3cnu_A 108 K 108 (116)
T ss_dssp H
T ss_pred H
Confidence 3
No 7
>3dgp_B RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae} SCOP: d.295.1.0 PDB: 3dom_B
Probab=22.98 E-value=29 Score=25.14 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=20.0
Q ss_pred eCCceeeeChhhHHHHhheeeeeEEEEEEEe
Q 039482 143 IQPKFVTCNPEMQSEIDMHMSKGEASFSVLL 173 (218)
Q Consensus 143 Nd~~kItcdpeMq~~Id~~~s~G~Asf~V~l 173 (218)
--|--|+|||-|+.-|-.+=++|| .|=+.-
T Consensus 4 ~kGvLi~CDpa~Kq~il~lde~~~-~FIIed 33 (71)
T 3dgp_B 4 RKGALVQCDPSIKALILQIDAKMS-DIVLEE 33 (71)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHC-SSEEEE
T ss_pred eeEEEEEcCHHHHHHHHHHcCCCC-CEEEEE
Confidence 345568999999988876655544 454443
No 8
>3v3l_A E3 ubiquitin-protein ligase RNF146; HET: V3L; 1.65A {Homo sapiens}
Probab=20.27 E-value=49 Score=23.80 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=31.9
Q ss_pred eEEEeeeCCceeeeChhhHHHHhheeeeeEEEEEEEee
Q 039482 137 NVRLMSIQPKFVTCNPEMQSEIDMHMSKGEASFSVLLL 174 (218)
Q Consensus 137 lVkvfANd~~kItcdpeMq~~Id~~~s~G~Asf~V~ll 174 (218)
.+=.|.+++-|..||++....|+....+|+.+.++...
T Consensus 5 ~~W~w~~~~GW~~Yd~~~s~~IE~af~~~~~~~~l~i~ 42 (85)
T 3v3l_A 5 YAWYYEGRNGWWQYDERTSRELEDAFSKGKKNTEMLIA 42 (85)
T ss_dssp EEEEEECSSSEEECCHHHHHHHHHHHHTTCSEEEEEET
T ss_pred eEEEEeCCCCceeCCHHHHHHHHHHHHhCCCcEEEEeC
Confidence 45567787679999999999999999999988777544
No 9
>1ydl_A TFIIH, general transcription factor IIH, polypeptide 5; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Homo sapiens} SCOP: d.295.1.1 PDB: 2jnj_A
Probab=18.86 E-value=51 Score=24.34 Aligned_cols=16 Identities=19% Similarity=0.501 Sum_probs=12.6
Q ss_pred CceeeeChhhHHHHhh
Q 039482 145 PKFVTCNPEMQSEIDM 160 (218)
Q Consensus 145 ~~kItcdpeMq~~Id~ 160 (218)
|--|+|||-|+.-|-.
T Consensus 15 GvLI~CDpa~Kq~Il~ 30 (79)
T 1ydl_A 15 GMLIECDPAMKQFLLY 30 (79)
T ss_dssp CEEEECCHHHHHHHHH
T ss_pred ceEEEeCHHHHHHHHH
Confidence 5568999999987654
No 10
>3rob_A Uncharacterized conserved protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.48A {Planctomyces limnophilus}
Probab=17.24 E-value=2.4e+02 Score=20.75 Aligned_cols=49 Identities=22% Similarity=0.107 Sum_probs=29.0
Q ss_pred eeeeEEeccc-cCCceeEEeeeec-CCeeee----eEEEEEEcCCCCeeeeecCC
Q 039482 56 IEQFQIVGEA-TPGKKLLGCGYPL-GGAHLC----MFQWVRHLQDGTKHYIKGAI 104 (218)
Q Consensus 56 IeglqI~Gea-~pG~~L~acG~~i-nGttlC----~FQWvRhleDGt~~~IeGAt 104 (218)
+.-++|.||. +-=....+.+.+- +|...- .++-+|.-+||.++.++-+.
T Consensus 80 ~~~i~v~GD~A~~~~~~~~~~t~~~~g~~~~~~g~~~~v~rK~~dG~W~i~~d~~ 134 (139)
T 3rob_A 80 FEEIVIVEPMAYTRTHLHIKVTPRSGGAVRELAGHAMSIFRRSMFGEWQLARDAN 134 (139)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEETTSCCCEEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred EEEEEEcCCeEEEEEEEEEEEecCCCCceeEeeccEEEEEEECCCCcEEEEEEhh
Confidence 4456888884 4444445555544 333221 33455666999998887654
Done!