Query 039483
Match_columns 360
No_of_seqs 208 out of 3431
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 17:19:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039483.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039483hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 5.3E-38 1.8E-42 302.2 24.5 269 23-311 12-367 (437)
2 1yyh_A HN1;, notch 1, ankyrin 100.0 2.6E-38 8.8E-43 282.7 18.8 227 22-315 7-250 (253)
3 1wdy_A 2-5A-dependent ribonucl 100.0 3.8E-37 1.3E-41 278.0 24.4 229 25-311 5-276 (285)
4 1n11_A Ankyrin; clathrin, BAND 100.0 1.6E-37 5.3E-42 298.9 22.2 230 60-309 27-299 (437)
5 4g8k_A 2-5A-dependent ribonucl 100.0 1.9E-37 6.4E-42 288.4 21.6 234 23-311 23-296 (337)
6 1k1a_A B-cell lymphoma 3-encod 100.0 7.1E-38 2.4E-42 276.7 17.0 226 22-311 6-239 (241)
7 3aji_A 26S proteasome non-ATPa 100.0 5.5E-37 1.9E-41 269.6 20.0 220 25-311 6-228 (231)
8 3b7b_A Euchromatic histone-lys 100.0 1.2E-36 4E-41 268.5 21.4 225 19-311 5-233 (237)
9 2xai_A ASB-9, ankyrin repeat a 100.0 4.2E-37 1.4E-41 276.1 18.0 214 25-310 3-219 (261)
10 3d9h_A CDNA FLJ77766, highly s 100.0 4.2E-37 1.4E-41 279.9 17.3 236 17-311 7-245 (285)
11 1oy3_D Transcription factor in 100.0 3.6E-36 1.2E-40 271.8 18.8 215 22-301 6-271 (282)
12 2dzn_A Probable 26S proteasome 100.0 1.1E-35 3.7E-40 260.6 18.0 217 25-308 2-225 (228)
13 4b93_B Ankyrin repeat domain-c 100.0 9.7E-37 3.3E-41 275.2 11.1 216 25-300 11-230 (269)
14 3ljn_A Hypothetical protein; a 100.0 1.1E-35 3.8E-40 279.4 18.3 225 20-311 15-267 (364)
15 2fo1_E LIN-12 protein; beta-ba 100.0 7.1E-36 2.4E-40 282.1 15.3 198 67-311 154-369 (373)
16 3utm_A Tankyrase-1; tankyrase, 100.0 1.2E-34 4E-39 269.6 21.5 223 23-312 22-304 (351)
17 3eu9_A Huntingtin-interacting 100.0 2.6E-34 8.8E-39 253.1 20.1 223 23-311 7-233 (240)
18 1s70_B 130 kDa myosin-binding 100.0 7.3E-35 2.5E-39 265.9 14.5 219 24-310 39-286 (299)
19 2f8y_A Notch homolog 1, transl 100.0 8.7E-34 3E-38 247.7 20.6 205 61-311 5-214 (223)
20 3utm_A Tankyrase-1; tankyrase, 100.0 1.3E-33 4.3E-38 262.6 22.6 223 20-311 53-332 (351)
21 1oy3_D Transcription factor in 100.0 7.5E-34 2.6E-38 256.5 18.6 197 75-311 3-248 (282)
22 3d9h_A CDNA FLJ77766, highly s 100.0 5E-33 1.7E-37 252.9 21.1 218 21-310 55-275 (285)
23 4g8k_A 2-5A-dependent ribonucl 100.0 1.4E-32 4.7E-37 255.6 23.2 251 23-311 57-324 (337)
24 3b7b_A Euchromatic histone-lys 100.0 9.7E-33 3.3E-37 243.3 21.0 195 75-313 5-202 (237)
25 2rfa_A Transient receptor pote 100.0 4.1E-33 1.4E-37 245.1 18.5 190 80-314 2-223 (232)
26 1wdy_A 2-5A-dependent ribonucl 100.0 1.1E-32 3.8E-37 248.6 21.6 205 22-285 36-283 (285)
27 1yyh_A HN1;, notch 1, ankyrin 100.0 8.9E-34 3E-38 253.2 13.9 197 72-312 2-214 (253)
28 1k1a_A B-cell lymphoma 3-encod 100.0 2.6E-32 9.1E-37 240.8 19.3 193 75-311 3-206 (241)
29 2fo1_E LIN-12 protein; beta-ba 100.0 1.8E-33 6E-38 265.7 11.8 195 72-311 116-336 (373)
30 3kea_A K1L; tropism, ANK repea 100.0 6.9E-33 2.4E-37 252.0 14.9 216 20-314 26-247 (285)
31 1ikn_D Protein (I-kappa-B-alph 100.0 2E-33 6.8E-38 248.0 11.0 212 22-297 5-228 (236)
32 3kea_A K1L; tropism, ANK repea 100.0 1.5E-32 5.2E-37 249.8 16.9 191 72-311 23-218 (285)
33 3hra_A Ankyrin repeat family p 100.0 3.8E-32 1.3E-36 233.5 18.0 189 78-310 2-200 (201)
34 2xai_A ASB-9, ankyrin repeat a 100.0 6E-32 2.1E-36 242.5 18.5 185 80-311 2-189 (261)
35 4gpm_A Engineered protein OR26 100.0 2E-31 6.7E-36 223.6 19.0 157 27-249 6-162 (169)
36 2f8y_A Notch homolog 1, transl 100.0 2.6E-31 9E-36 231.9 20.0 189 22-278 22-212 (223)
37 3hra_A Ankyrin repeat family p 100.0 1.6E-31 5.6E-36 229.5 18.1 190 23-278 3-199 (201)
38 2rfa_A Transient receptor pote 100.0 1.6E-31 5.6E-36 234.8 18.4 193 25-278 3-218 (232)
39 4b93_B Ankyrin repeat domain-c 100.0 5.4E-32 1.9E-36 244.1 15.5 181 22-270 49-230 (269)
40 2etb_A Transient receptor pote 100.0 8.5E-32 2.9E-36 240.4 16.6 214 24-313 1-246 (256)
41 3aji_A 26S proteasome non-ATPa 100.0 1.3E-31 4.5E-36 235.1 17.3 188 22-277 37-225 (231)
42 2dzn_A Probable 26S proteasome 100.0 9.2E-31 3.2E-35 229.1 22.2 191 81-311 2-198 (228)
43 1ikn_D Protein (I-kappa-B-alph 100.0 1E-32 3.5E-37 243.4 8.8 195 75-312 2-208 (236)
44 2pnn_A Transient receptor pote 100.0 6.2E-32 2.1E-36 243.7 13.9 212 20-311 8-256 (273)
45 3ljn_A Hypothetical protein; a 100.0 1.1E-31 3.8E-36 252.0 13.1 236 21-309 49-310 (364)
46 3jxi_A Vanilloid receptor-rela 100.0 9.8E-31 3.3E-35 234.0 15.9 214 24-313 4-250 (260)
47 1s70_B 130 kDa myosin-binding 100.0 2.8E-31 9.7E-36 242.1 12.6 222 31-311 4-255 (299)
48 4gpm_A Engineered protein OR26 100.0 1.9E-30 6.6E-35 217.5 14.9 151 83-278 6-157 (169)
49 3eu9_A Huntingtin-interacting 100.0 2E-29 6.9E-34 221.7 18.7 193 75-311 3-200 (240)
50 2pnn_A Transient receptor pote 100.0 2.5E-30 8.4E-35 233.2 12.8 164 71-269 4-195 (273)
51 1sw6_A Regulatory protein SWI6 100.0 9.5E-31 3.2E-35 242.6 5.8 219 23-299 50-327 (327)
52 3v30_A DNA-binding protein rfx 100.0 4.2E-29 1.4E-33 209.4 15.2 169 26-261 3-171 (172)
53 4hbd_A KN motif and ankyrin re 100.0 2.6E-29 9E-34 227.4 12.9 190 79-311 74-273 (276)
54 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.6E-28 5.5E-33 203.5 16.4 159 24-248 4-162 (162)
55 2vge_A RELA-associated inhibit 100.0 5.5E-31 1.9E-35 231.9 1.3 194 75-315 15-216 (229)
56 2rfm_A Putative ankyrin repeat 100.0 7.5E-29 2.6E-33 211.7 14.0 150 71-266 26-175 (192)
57 1sw6_A Regulatory protein SWI6 100.0 5.7E-29 1.9E-33 230.6 14.0 214 60-311 32-306 (327)
58 4hbd_A KN motif and ankyrin re 100.0 3.8E-29 1.3E-33 226.3 11.9 191 27-278 78-271 (276)
59 3v30_A DNA-binding protein rfx 100.0 1.8E-28 6E-33 205.6 13.7 166 81-291 2-171 (172)
60 2y1l_E Darpin-8.4; hydrolase-i 100.0 8.7E-28 3E-32 201.0 17.7 159 22-246 11-169 (169)
61 3v31_A Ankyrin repeat family A 100.0 6.4E-28 2.2E-32 201.1 16.6 159 25-249 3-161 (167)
62 2rfm_A Putative ankyrin repeat 100.0 1.4E-27 4.6E-32 203.9 17.7 160 21-246 31-190 (192)
63 3v31_A Ankyrin repeat family A 100.0 9.3E-28 3.2E-32 200.2 15.0 157 80-311 2-158 (167)
64 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.4E-27 4.9E-32 199.7 13.7 151 77-272 10-160 (169)
65 3f6q_A Integrin-linked protein 99.9 2.1E-27 7.1E-32 200.5 13.5 165 25-255 5-169 (179)
66 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1.3E-26 4.6E-31 190.8 17.9 153 26-245 3-155 (156)
67 3twr_A Tankyrase-2; ankyrin re 99.9 1.8E-27 6E-32 198.1 12.6 160 22-247 5-164 (165)
68 1awc_B Protein (GA binding pro 99.9 1.6E-26 5.4E-31 190.0 18.0 149 27-242 4-152 (153)
69 2vge_A RELA-associated inhibit 99.9 1.2E-28 3.9E-33 217.0 5.3 184 21-275 17-206 (229)
70 1awc_B Protein (GA binding pro 99.9 3.8E-27 1.3E-31 193.7 13.5 145 82-272 3-147 (153)
71 1ihb_A P18-INK4C(INK6), cyclin 99.9 2.2E-27 7.5E-32 196.6 11.1 155 81-310 5-159 (162)
72 3f6q_A Integrin-linked protein 99.9 8.4E-27 2.9E-31 196.8 14.7 164 79-287 3-170 (179)
73 2etb_A Transient receptor pote 99.9 1.7E-26 5.9E-31 205.9 15.7 187 21-249 39-247 (256)
74 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.1E-27 3.8E-32 212.0 7.3 177 78-300 2-193 (239)
75 3jxi_A Vanilloid receptor-rela 99.9 1.6E-26 5.5E-31 206.5 14.7 186 23-249 44-251 (260)
76 3twr_A Tankyrase-2; ankyrin re 99.9 9.2E-27 3.2E-31 193.7 12.0 155 77-277 4-160 (165)
77 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.6E-26 8.9E-31 189.0 13.2 150 143-310 3-155 (156)
78 1ycs_B 53BP2, P53BP2; ankyrin 99.9 8.6E-27 2.9E-31 206.2 8.6 204 23-296 3-226 (239)
79 1d9s_A Cyclin-dependent kinase 99.9 1.5E-25 5.1E-30 180.6 12.2 134 70-248 2-136 (136)
80 1bi7_B P16INK4A, MTS1, multipl 99.9 8.1E-26 2.8E-30 186.5 10.4 145 75-265 6-151 (156)
81 3t8k_A Uncharacterized protein 99.9 7.5E-26 2.6E-30 192.6 8.2 166 26-254 7-184 (186)
82 3t8k_A Uncharacterized protein 99.9 1.6E-24 5.5E-29 184.3 11.2 158 143-315 7-181 (186)
83 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.4E-23 4.6E-28 165.8 15.3 126 80-248 1-126 (126)
84 2aja_A Ankyrin repeat family p 99.9 3.5E-26 1.2E-30 215.2 0.2 214 25-310 92-341 (376)
85 2jab_A H10-2-G3; HER2, darpin, 99.9 8.3E-24 2.8E-28 170.3 12.3 128 76-246 9-136 (136)
86 1bi7_B P16INK4A, MTS1, multipl 99.9 2.1E-23 7.3E-28 171.9 11.5 142 22-230 9-151 (156)
87 3deo_A Signal recognition part 99.9 1.1E-22 3.6E-27 172.3 11.2 136 143-310 45-181 (183)
88 1d9s_A Cyclin-dependent kinase 99.9 3.7E-22 1.3E-26 160.5 13.5 125 22-212 9-134 (136)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 8.5E-22 2.9E-26 158.4 14.7 126 22-212 11-136 (136)
90 3ui2_A Signal recognition part 99.9 1.7E-22 5.9E-27 179.2 11.4 137 143-311 46-183 (244)
91 3c5r_A BARD-1, BRCA1-associate 99.9 4.9E-23 1.7E-27 165.8 6.9 112 144-272 12-123 (137)
92 3c5r_A BARD-1, BRCA1-associate 99.9 3.2E-22 1.1E-26 161.0 11.2 123 175-310 6-131 (137)
93 3ui2_A Signal recognition part 99.9 1.4E-21 4.8E-26 173.2 13.2 143 23-249 43-186 (244)
94 1n0r_A 4ANK, 4 ankyrin repeats 99.9 5.6E-21 1.9E-25 150.6 15.0 123 25-212 2-124 (126)
95 3deo_A Signal recognition part 99.9 2.8E-21 9.6E-26 163.5 14.1 139 23-245 42-181 (183)
96 3ehr_A Osteoclast-stimulating 99.9 2.2E-22 7.4E-27 175.6 7.3 137 75-255 67-204 (222)
97 2b0o_E UPLC1; arfgap, structur 99.9 1.1E-21 3.9E-26 179.3 12.0 147 80-271 150-299 (301)
98 3aaa_C Myotrophin, protein V-1 99.9 8.1E-22 2.8E-26 155.6 8.5 105 144-265 9-113 (123)
99 2b0o_E UPLC1; arfgap, structur 99.9 2.8E-21 9.7E-26 176.7 12.5 139 26-236 152-299 (301)
100 3aaa_C Myotrophin, protein V-1 99.8 3.1E-21 1.1E-25 152.3 10.3 116 175-303 3-121 (123)
101 2aja_A Ankyrin repeat family p 99.8 8E-23 2.7E-27 192.3 1.1 112 144-277 130-245 (376)
102 3ehr_A Osteoclast-stimulating 99.8 2.6E-21 8.9E-26 168.7 9.7 129 143-287 74-205 (222)
103 3lvq_E ARF-GAP with SH3 domain 99.8 7.6E-20 2.6E-24 178.7 13.9 132 81-249 132-266 (497)
104 3jue_A Arfgap with coiled-coil 99.8 5.3E-20 1.8E-24 172.4 12.3 145 80-268 198-347 (368)
105 1dcq_A PYK2-associated protein 99.8 1.6E-19 5.4E-24 163.2 13.5 130 82-248 131-263 (278)
106 3lvq_E ARF-GAP with SH3 domain 99.8 2.6E-19 8.9E-24 174.9 14.5 135 27-233 134-277 (497)
107 3jue_A Arfgap with coiled-coil 99.8 6.1E-19 2.1E-23 165.3 13.6 159 25-248 199-364 (368)
108 1dcq_A PYK2-associated protein 99.8 8.2E-19 2.8E-23 158.5 13.9 127 26-212 131-261 (278)
109 1n0q_A 3ANK, 3 ankyrin repeats 99.8 6.9E-19 2.4E-23 131.7 11.3 91 143-248 3-93 (93)
110 1n0q_A 3ANK, 3 ankyrin repeats 99.8 9.8E-19 3.3E-23 130.8 11.2 91 80-212 1-91 (93)
111 2l6b_A NR1C; ankyrin, consensu 99.8 4.8E-19 1.6E-23 137.8 9.1 109 75-226 3-111 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.8 5.9E-19 2E-23 137.3 8.6 108 129-262 5-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 1.7E-16 5.8E-21 122.5 9.0 96 70-208 14-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.6 8.9E-16 3.1E-20 118.4 9.0 85 143-242 25-109 (110)
115 1gp8_A Protein (scaffolding pr 54.9 10 0.00035 22.0 2.5 22 25-46 13-34 (40)
116 4g26_A Pentatricopeptide repea 29.3 22 0.00075 33.8 2.0 20 28-47 32-51 (501)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=5.3e-38 Score=302.19 Aligned_cols=269 Identities=16% Similarity=0.140 Sum_probs=181.8
Q ss_pred CCCCHHHHHHHHcCChHHHHHHHHHHHhhh-hcccCCc----------ccccc-ccccccccccCCCCCCCCChHHHHHH
Q 039483 23 PQIDPNLFKVAAAGNLEPFKDMAREVIESL-LTARSRT----------QSCIS-TSNCRRQKMCQPVTAKGDTRSRHVAA 90 (360)
Q Consensus 23 ~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~-~~~~~~t----------~~~v~-l~~~~~~~~~~~~~~~g~tp~Lh~A~ 90 (360)
..+.||||.||..|+.++++.|++...+.. .+..+.| .++++ |.+. +..+ +.+|..|.|| ||+|+
T Consensus 12 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~-~~~~~~g~t~-L~~A~ 88 (437)
T 1n11_A 12 ESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAKV-NAKAKDDQTP-LHCAA 88 (437)
T ss_dssp ---CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCCS-SCCCTTSCCH-HHHHH
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCC-CCCCCCCCCH-HHHHH
Confidence 345566666666666666666666322111 1222333 45555 5555 5666 6666666666 66666
Q ss_pred hcCCHHHHHHHHHhccccCcccccccccchh------------------------------------------hHHH---
Q 039483 91 KFDHCDIVSVLIERAKLVQHEDEELESGVGA------------------------------------------SRQM--- 125 (360)
Q Consensus 91 ~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~------------------------------------------~~~~--- 125 (360)
..|+.+++++|+++|++++..+..+.++.+. .+.+
T Consensus 89 ~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 168 (437)
T 1n11_A 89 RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER 168 (437)
T ss_dssp HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 6666666666666666666555555544221 1112
Q ss_pred ---hhcccCCCCchHHHhh-h-----------------------cCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCC
Q 039483 126 ---IRMTNKEKHTTLHEAY-N-----------------------KIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPM 178 (360)
Q Consensus 126 ---l~~~d~~g~t~Lh~a~-~-----------------------~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~ 178 (360)
++..+..|.||||+|+ + .||||+|+..|+ .+++++|++.|++++. ++..
T Consensus 169 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-~~~~~~Ll~~g~~~~~---~~~~ 244 (437)
T 1n11_A 169 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ-VEVARSLLQYGGSANA---ESVQ 244 (437)
T ss_dssp TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTC-HHHHHHHHHTTCCTTC---CCTT
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCC-HHHHHHHHHcCCCCCC---CCCC
Confidence 2344555666666665 1 577777777777 7777777777777776 7777
Q ss_pred CCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCccccccccCCC
Q 039483 179 ERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKIDRTAAKIADKDRK 258 (360)
Q Consensus 179 g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~g 258 (360)
|.||||+|+..|+. +++++|++.+ .+++..+..|+||||+|+..|+.+++++|+++|+++ +.++. .|
T Consensus 245 g~t~L~~A~~~g~~----------~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~-~g 311 (437)
T 1n11_A 245 GVTPLHLAAQEGHA----------EMVALLLSKQ-ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTR-MG 311 (437)
T ss_dssp CCCHHHHHHHTTCH----------HHHHHHHTTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCS-SC
T ss_pred CCCHHHHHHHCCCH----------HHHHHHHhcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccC-CCCCC-CC
Confidence 77777777777777 8888888777 667777788888888888888888888888888888 78887 88
Q ss_pred CchhhhhhcCCccc-cccccc--ccCccCCCCCCcHHHHHHHcCCHHHHHHHhhhh
Q 039483 259 MTALHLVHGPKGCQ-NNMLAS--SLMDEGDAKGNTTVHFFAAVHRKEIFDDLSGRV 311 (360)
Q Consensus 259 ~tpLh~A~~~~~~~-~~~L~~--~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~~~~ 311 (360)
+||||+|+..++.+ +++|+. ++++.+|..|+||||+|++.|+.++++.|++..
T Consensus 312 ~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g 367 (437)
T 1n11_A 312 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367 (437)
T ss_dssp CCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCc
Confidence 88888888888877 777773 778888888888888888888888888887763
No 2
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=2.6e-38 Score=282.67 Aligned_cols=227 Identities=15% Similarity=0.159 Sum_probs=178.9
Q ss_pred CCCCCHHHHHHHHcC-------------ChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHH
Q 039483 22 QPQIDPNLFKVAAAG-------------NLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHV 88 (360)
Q Consensus 22 ~~~~~~~L~~Aa~~G-------------~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~ 88 (360)
...+.||||.|+..| +.++++.|++. +..+....|..|.|| ||+
T Consensus 7 d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~----------------------g~~~~~~~d~~g~t~-L~~ 63 (253)
T 1yyh_A 7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ----------------------GASLHNQTDRTGETA-LHL 63 (253)
T ss_dssp -------------------------------------------------------------------CCCTTSCCH-HHH
T ss_pred CCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHc----------------------cCCcccccCCCCCcH-HHH
Confidence 456789999999988 77888887774 233315568899999 999
Q ss_pred HHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCC-
Q 039483 89 AAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCT- 167 (360)
Q Consensus 89 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~- 167 (360)
|+..|+.+++++|+++|++++. .|..|. ||||+|+..|+ .+++++|++.+.
T Consensus 64 A~~~g~~~~v~~Ll~~g~~~~~------------------~~~~g~---------t~L~~A~~~~~-~~~v~~Ll~~~~~ 115 (253)
T 1yyh_A 64 AARYSRSDAAKRLLEASADANI------------------QDNMGR---------TPLHAAVSADA-QGVFQILIRNRAT 115 (253)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTC------------------CCTTSC---------CHHHHHHHHTC-HHHHHHHHHSTTS
T ss_pred HHHcCCHHHHHHHHHcCCCCCC------------------CCCCCC---------CHHHHHHHcCC-HHHHHHHHHcCCC
Confidence 9999999999999999999988 778875 78888889999 999999999987
Q ss_pred CCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 039483 168 SVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKIDR 247 (360)
Q Consensus 168 ~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~ 247 (360)
+++. ++..|.||||+|+..++. +++++|++.+ .+++..|..|+||||+|+..|+.+++++|+++|+
T Consensus 116 ~~~~---~~~~g~t~L~~A~~~~~~----------~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga 181 (253)
T 1yyh_A 116 DLDA---RMHDGTTPLILAARLAVE----------GMLEDLINSH-ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 181 (253)
T ss_dssp CTTC---CCTTCCCHHHHHHHHTCS----------SHHHHHHHTT-CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC
T ss_pred Cccc---cCCCCCcHHHHHHHcChH----------HHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 7888 899999999999999999 9999999998 8899999999999999999999999999999999
Q ss_pred ccccccccCCCCchhhhhhcCCccc-cccccc--ccCccCCCCCCcHHHHHHHcCCHHHHHHHhhhhcccc
Q 039483 248 TAAKIADKDRKMTALHLVHGPKGCQ-NNMLAS--SLMDEGDAKGNTTVHFFAAVHRKEIFDDLSGRVKATM 315 (360)
Q Consensus 248 ~~~~~~d~~~g~tpLh~A~~~~~~~-~~~L~~--~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~~~~~~~~ 315 (360)
++ +.+|. .|.||||+|+..++.+ +++|+. ++++.+|..|+||+|+|+++|+.++++.|....++..
T Consensus 182 ~~-~~~~~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~~~ 250 (253)
T 1yyh_A 182 NK-DMQNN-REETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250 (253)
T ss_dssp CT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC------
T ss_pred CC-CCcCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhhcc
Confidence 99 99999 9999999999999999 888884 8999999999999999999999999999988765443
No 3
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.8e-37 Score=277.99 Aligned_cols=229 Identities=17% Similarity=0.139 Sum_probs=202.7
Q ss_pred CCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCC-CCCCCChHHHHHHhcCCHHHHHHHHH
Q 039483 25 IDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPV-TAKGDTRSRHVAAKFDHCDIVSVLIE 103 (360)
Q Consensus 25 ~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~-~~~g~tp~Lh~A~~~g~~~~v~~Ll~ 103 (360)
+.++||.|++.|+++.++.|++. +..+ +.. +..|.|| ||+|+..|+.+++++|++
T Consensus 5 g~~~L~~A~~~g~~~~v~~Ll~~----------------------g~~~-~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~ 60 (285)
T 1wdy_A 5 DNHLLIKAVQNEDVDLVQQLLEG----------------------GANV-NFQEEEGGWTP-LHNAVQMSREDIVELLLR 60 (285)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT----------------------TCCT-TCCCTTTCCCH-HHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHcCCHHHHHHHHHc----------------------CCCc-ccccCCCCCcH-HHHHHHcCCHHHHHHHHH
Confidence 45899999999999999999984 3334 434 6667788 888888888888888888
Q ss_pred hccccCcccccccccchhhHHHhhcccCCCCchHHHhh-h-----------------------cCHHHHHHhcCCcHHHH
Q 039483 104 RAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAY-N-----------------------KIPLCMAAEYEHSSHTV 159 (360)
Q Consensus 104 ~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~-~-----------------------~t~L~~A~~~g~~~~~~ 159 (360)
+|++++. .|..|.||||+|+ + .||||+|+..|+ .+++
T Consensus 61 ~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-~~~~ 121 (285)
T 1wdy_A 61 HGADPVL------------------RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK-VKAL 121 (285)
T ss_dssp TTCCTTC------------------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTC-HHHH
T ss_pred cCCCCcc------------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCC-HHHH
Confidence 8877776 6777777777777 1 699999999999 9999
Q ss_pred HHHHhhCCCCCccccC----------CCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHH
Q 039483 160 VAILKSCTSVSHIYMK----------APMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHY 229 (360)
Q Consensus 160 ~~Ll~~g~~~~~~~~~----------d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~ 229 (360)
++|+++|++++. . +..|.||||+|+..|+. +++++|++..+.+++..|..|+||||+
T Consensus 122 ~~Ll~~g~~~~~---~~~~~~~~~~~~~~g~t~L~~A~~~~~~----------~~v~~Ll~~~~~~~~~~~~~g~t~l~~ 188 (285)
T 1wdy_A 122 KFLYKRGANVNL---RRKTKEDQERLRKGGATALMDAAEKGHV----------EVLKILLDEMGADVNACDNMGRNALIH 188 (285)
T ss_dssp HHHHHTTCCTTC---CCCCCHHHHHTTCCCCCHHHHHHHHTCH----------HHHHHHHHTSCCCTTCCCTTSCCHHHH
T ss_pred HHHHHhCCCccc---ccccHHHHHhhccCCCcHHHHHHHcCCH----------HHHHHHHHhcCCCCCccCCCCCCHHHH
Confidence 999999999887 5 77899999999999999 999999998448899999999999999
Q ss_pred HHHcCC----HHHHHHHHhcCCccccccccCCCCchhhhhhcCCccc-cccccc---ccCccCCCCCCcHHHHHHHcCCH
Q 039483 230 AAYHRN----YLILKLILKIDRTAAKIADKDRKMTALHLVHGPKGCQ-NNMLAS---SLMDEGDAKGNTTVHFFAAVHRK 301 (360)
Q Consensus 230 A~~~~~----~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~-~~~L~~---~~~~~~d~~g~Tpl~~A~~~~~~ 301 (360)
|+..++ .+++++|+++|+++ +.++. .|+||||+|+..++.+ +++|+. ++++.+|..|+||||+|++.|+.
T Consensus 189 a~~~~~~~~~~~i~~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~ 266 (285)
T 1wdy_A 189 ALLSSDDSDVEAITHLLLDHGADV-NVRGE-RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLK 266 (285)
T ss_dssp HHHCSCTTTHHHHHHHHHHTTCCS-SCCCT-TSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHccccchHHHHHHHHHHcCCCC-CCcCC-CCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcH
Confidence 999999 99999999999999 99999 9999999999999999 888873 88999999999999999999999
Q ss_pred HHHHHHhhhh
Q 039483 302 EIFDDLSGRV 311 (360)
Q Consensus 302 ~i~~~l~~~~ 311 (360)
++++.|+++.
T Consensus 267 ~i~~~Ll~~G 276 (285)
T 1wdy_A 267 KIAELLCKRG 276 (285)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHcC
Confidence 9999999875
No 4
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.6e-37 Score=298.94 Aligned_cols=230 Identities=20% Similarity=0.221 Sum_probs=163.7
Q ss_pred ccccc-ccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchh---------hHHH----
Q 039483 60 QSCIS-TSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGA---------SRQM---- 125 (360)
Q Consensus 60 ~~~v~-l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~---------~~~~---- 125 (360)
.++++ |.+. +.++ +.++..|.|| ||+||..|+.+++++|+++|++++..|..+.++.+. ++.+
T Consensus 27 ~~~v~~Ll~~-g~~~-~~~~~~~~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 103 (437)
T 1n11_A 27 LPIVKNLLQR-GASP-NVSNVKVETP-LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN 103 (437)
T ss_dssp HHHHHHHHHT-TCCS-CCSSSCCCCH-HHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCC-CCCCCCCCCH-HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCC
Confidence 67777 7777 8899 9999999999 999999999999999999999999998888888433 3444
Q ss_pred --hhcccCCCCchHHHhh-h-----------------------cCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCC
Q 039483 126 --IRMTNKEKHTTLHEAY-N-----------------------KIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPME 179 (360)
Q Consensus 126 --l~~~d~~g~t~Lh~a~-~-----------------------~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g 179 (360)
++..+..|.||||+|+ + .||||+|+..|+ .+++++|+++|++++. .+..|
T Consensus 104 a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll~~g~~~~~---~~~~g 179 (437)
T 1n11_A 104 ANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGK-VRVAELLLERDAHPNA---AGKNG 179 (437)
T ss_dssp CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTC-HHHHHHHHHTTCCTTC---CCSSC
T ss_pred CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCC-HHHHHHHHhCCCCCCC---CCCCC
Confidence 4567888999999998 2 588888888888 8888888888888887 78888
Q ss_pred CcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCccccccccCCCC
Q 039483 180 RQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKIDRTAAKIADKDRKM 259 (360)
Q Consensus 180 ~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~g~ 259 (360)
.||||+|+..++. +++++|++.+ .+++..+..|.||||+|+..|+.+++++|++.|+++ +..+. .|.
T Consensus 180 ~t~L~~A~~~~~~----------~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~-~g~ 246 (437)
T 1n11_A 180 LTPLHVAVHHNNL----------DIVKLLLPRG-GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESV-QGV 246 (437)
T ss_dssp CCHHHHHHHTTCH----------HHHHHHGGGT-CCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCC
T ss_pred CCHHHHHHHcCCH----------HHHHHHHhCC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC-CCC
Confidence 8888888888877 7777777666 445555555666666666666666666666555555 55555 555
Q ss_pred chhhhhhcCCccc-cccccc--ccCccCCCCCCcHHHHHHHcCCHHHHHHHhh
Q 039483 260 TALHLVHGPKGCQ-NNMLAS--SLMDEGDAKGNTTVHFFAAVHRKEIFDDLSG 309 (360)
Q Consensus 260 tpLh~A~~~~~~~-~~~L~~--~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~~ 309 (360)
||||+|+..++.+ +++|+. ++++.+|..|+||||+|++.|+.++++.|.+
T Consensus 247 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 299 (437)
T 1n11_A 247 TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 299 (437)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 5555555555555 444442 4444444444444444444444444444444
No 5
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.9e-37 Score=288.42 Aligned_cols=234 Identities=17% Similarity=0.120 Sum_probs=202.1
Q ss_pred CCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCC-CCCChHHHHHHhcCCHHHHHHH
Q 039483 23 PQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTA-KGDTRSRHVAAKFDHCDIVSVL 101 (360)
Q Consensus 23 ~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~-~g~tp~Lh~A~~~g~~~~v~~L 101 (360)
..+.++||.||++|++++|+.|++. +.++ +.++. .|.|| ||+||..|+.++|++|
T Consensus 23 ~~~~t~L~~Av~~g~~~~V~~LL~~----------------------Gadv-n~~~~~~g~Tp-Lh~A~~~g~~~iv~~L 78 (337)
T 4g8k_A 23 VEDNHLLIKAVQNEDVDLVQQLLEG----------------------GANV-NFQEEEGGWTP-LHNAVQMSREDIVELL 78 (337)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH----------------------TCCT-TCCCTTTCCCH-HHHHHHTTCHHHHHHH
T ss_pred CCCChHHHHHHHcCCHHHHHHHHHC----------------------CCCC-CccCCCCCcCH-HHHHHHcCCHHHHHHH
Confidence 3357899999999999999999984 6677 77765 49999 9999999999999999
Q ss_pred HHhccccCcccccccccchhhHHHhhcccCCCCchHHHhh-h-----------------------cCHHHHHHhcCCcHH
Q 039483 102 IERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAY-N-----------------------KIPLCMAAEYEHSSH 157 (360)
Q Consensus 102 l~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~-~-----------------------~t~L~~A~~~g~~~~ 157 (360)
+++|++++. ++..+.++++.+. . .||||+|+..|+ .+
T Consensus 79 l~~ga~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~-~~ 139 (337)
T 4g8k_A 79 LRHGADPVL------------------RKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK-VK 139 (337)
T ss_dssp HHTTCCTTC------------------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTC-HH
T ss_pred HHcCCchhh------------------hccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCc-HH
Confidence 999999998 4555555555544 1 589999999999 99
Q ss_pred HHHHHHhhCCCCCccc-------cCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHH
Q 039483 158 TVVAILKSCTSVSHIY-------MKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYA 230 (360)
Q Consensus 158 ~~~~Ll~~g~~~~~~~-------~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A 230 (360)
++++|+++|++++... ..+..|.||||+|+..|+. +++++|+...+.+++.+|..|.|++|.+
T Consensus 140 ~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~----------~~v~~LL~~~gad~n~~d~~g~t~l~~~ 209 (337)
T 4g8k_A 140 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV----------EVLKILLDEMGADVNACDNMGRNALIHA 209 (337)
T ss_dssp HHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCH----------HHHHHHHHHSCCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCH----------HHHHHHHhccCCCcCccCCCCCcHHHHH
Confidence 9999999998876411 1344689999999999999 9999999765488999999999999998
Q ss_pred HHcCC----HHHHHHHHhcCCccccccccCCCCchhhhhhcCCccc-ccccc---cccCccCCCCCCcHHHHHHHcCCHH
Q 039483 231 AYHRN----YLILKLILKIDRTAAKIADKDRKMTALHLVHGPKGCQ-NNMLA---SSLMDEGDAKGNTTVHFFAAVHRKE 302 (360)
Q Consensus 231 ~~~~~----~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~-~~~L~---~~~~~~~d~~g~Tpl~~A~~~~~~~ 302 (360)
+..+. ..++++|+++|+++ +.++. .|+||||+|+..++.+ ++.|+ +++++.+|..|+||||+|++.|+.+
T Consensus 210 ~~~~~~~~~~~i~~lLl~~gad~-n~~d~-~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~ 287 (337)
T 4g8k_A 210 LLSSDDSDVEAITHLLLDHGADV-NVRGE-RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK 287 (337)
T ss_dssp HHHSCTTTHHHHHHHHHHTTCCT-TCCCG-GGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred HHHcCcccHHHHHHHHHHCCCCC-CCcCC-CCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHH
Confidence 87654 46889999999999 99999 9999999999999998 77776 3899999999999999999999999
Q ss_pred HHHHHhhhh
Q 039483 303 IFDDLSGRV 311 (360)
Q Consensus 303 i~~~l~~~~ 311 (360)
+++.|+++.
T Consensus 288 iv~~Ll~~G 296 (337)
T 4g8k_A 288 IAELLCKRG 296 (337)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHHCC
Confidence 999998863
No 6
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=7.1e-38 Score=276.65 Aligned_cols=226 Identities=16% Similarity=0.144 Sum_probs=202.9
Q ss_pred CCCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHH
Q 039483 22 QPQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVL 101 (360)
Q Consensus 22 ~~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~L 101 (360)
...+.+|||.||+.|+.++++.|++.-... +..+ +.+|..|.|| ||+|+..|+.+++++|
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~------------------~~~~-~~~~~~g~t~-L~~A~~~~~~~~v~~L 65 (241)
T 1k1a_A 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQG------------------GREL-DIYNNLRQTP-LHLAVITTLPSVVRLL 65 (241)
T ss_dssp -CTTCCHHHHHHHTTCHHHHHHHHHHHHHT------------------TCCS-CCCCTTSCCH-HHHHHHTTCHHHHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHHHHhc------------------CCCC-CcccccCCCH-HHHHHHcCCHHHHHHH
Confidence 456779999999999999999999832222 6778 8899999999 9999999999999999
Q ss_pred HHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCC----CCCccccCCC
Q 039483 102 IERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCT----SVSHIYMKAP 177 (360)
Q Consensus 102 l~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~----~~~~~~~~d~ 177 (360)
+++|++++. .|..|. ||||+|+..|+ .+++++|++.+. +++. .+.
T Consensus 66 l~~g~~~~~------------------~~~~g~---------t~l~~A~~~~~-~~~~~~Ll~~~~~~~~~~~~---~~~ 114 (241)
T 1k1a_A 66 VTAGASPMA------------------LDRHGQ---------TAAHLACEHRS-PTCLRALLDSAAPGTLDLEA---RNY 114 (241)
T ss_dssp HHTTCCTTC------------------CCTTSC---------CHHHHHHHTTC-HHHHHHHHHHSCTTSCCTTC---CCT
T ss_pred HHcCCCccc------------------cCCCCC---------CHHHHHHHcCC-HHHHHHHHHcCCCccccccc---cCc
Confidence 999999887 777775 78888889999 999999999987 7777 899
Q ss_pred CCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCcccccccc-CCCChHHHHHHHcCCHHHHHHHHhcCCccccccccC
Q 039483 178 MERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGID-QCWWTPIHYAAYHRNYLILKLILKIDRTAAKIADKD 256 (360)
Q Consensus 178 ~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d-~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~ 256 (360)
.|.||||+|+..++. +++++|++.+ .+++..+ ..|.||||+|+..|+.+++++|+++|+++ +.++.
T Consensus 115 ~g~t~L~~A~~~~~~----------~~~~~Ll~~g-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~- 181 (241)
T 1k1a_A 115 DGLTALHVAVNTECQ----------ETVQLLLERG-ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMY- 181 (241)
T ss_dssp TSCCHHHHHHHHTCH----------HHHHHHHHTT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCBCT-
T ss_pred CCCcHHHHHHHcCCH----------HHHHHHHHcC-CCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-
Confidence 999999999999999 9999999999 7788888 88999999999999999999999999999 99999
Q ss_pred CCCchhhhhhcCCccc-ccccc--cccCccCCCCCCcHHHHHHHcCCHHHHHHHhhhh
Q 039483 257 RKMTALHLVHGPKGCQ-NNMLA--SSLMDEGDAKGNTTVHFFAAVHRKEIFDDLSGRV 311 (360)
Q Consensus 257 ~g~tpLh~A~~~~~~~-~~~L~--~~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~~~~ 311 (360)
.|+||||+|+..++.+ +++|+ +++++.+|..|+||+|+|++.|+.++++.|..+.
T Consensus 182 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~ 239 (241)
T 1k1a_A 182 SGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239 (241)
T ss_dssp TSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC-----
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCC
Confidence 9999999999999999 88888 4999999999999999999999999999887764
No 7
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=5.5e-37 Score=269.57 Aligned_cols=220 Identities=19% Similarity=0.171 Sum_probs=204.1
Q ss_pred CCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHHHHh
Q 039483 25 IDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLIER 104 (360)
Q Consensus 25 ~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~ 104 (360)
.+++||.||..|+++.++.+++.. +..+ +.+|..|.|| ||+|+..|+.+++++|+++
T Consensus 6 ~~~~l~~A~~~g~~~~v~~ll~~~---------------------~~~~-~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~ 62 (231)
T 3aji_A 6 SNIMICNLAYSGKLDELKERILAD---------------------KSLA-TRTDQDSRTA-LHWACSAGHTEIVEFLLQL 62 (231)
T ss_dssp SSSHHHHHHHHTCHHHHHHHHHHC---------------------GGGG-GCCCTTSCCH-HHHHHHHTCHHHHHHHHHT
T ss_pred ccchHHHHHHhCCHHHHHHHHHhc---------------------hhhh-hcCCCCCCCH-HHHHHHcCcHHHHHHHHHh
Confidence 457899999999999999999842 3345 7789999999 9999999999999999999
Q ss_pred ccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHH
Q 039483 105 AKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQALH 184 (360)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh 184 (360)
|++++. .|..|. ||||+|+..|+ .+++++|+++|++++. ++..|.||||
T Consensus 63 g~~~~~------------------~~~~g~---------t~L~~A~~~~~-~~~v~~Ll~~g~~~~~---~~~~g~t~L~ 111 (231)
T 3aji_A 63 GVPVND------------------KDDAGW---------SPLHIAASAGX-DEIVKALLVKGAHVNA---VNQNGCTPLH 111 (231)
T ss_dssp TCCSCC------------------CCTTSC---------CHHHHHHHHTC-HHHHHHHHHTTCCTTC---CCTTSCCHHH
T ss_pred CCCCCC------------------cCCCCC---------CHHHHHHHcCH-HHHHHHHHHcCCCCCC---CCCCCCCHHH
Confidence 999887 777875 78888889999 9999999999999999 9999999999
Q ss_pred HHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCccccccccCCCCchhhh
Q 039483 185 AATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKIDRTAAKIADKDRKMTALHL 264 (360)
Q Consensus 185 ~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~ 264 (360)
+|+..++. +++++|++.+ .+++..+..|.||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+
T Consensus 112 ~A~~~~~~----------~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~ 178 (231)
T 3aji_A 112 YAASKNRH----------EIAVMLLEGG-ANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST-NIQDT-EGNTPLHL 178 (231)
T ss_dssp HHHHTTCH----------HHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCT-TSCCHHHH
T ss_pred HHHHcCCH----------HHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-cccCC-CCCCHHHH
Confidence 99999999 9999999998 888999999999999999999999999999999999 99999 99999999
Q ss_pred hhcCCccc-ccccc--cccCccCCCCCCcHHHHHHHcCCHHHHHHHhhhh
Q 039483 265 VHGPKGCQ-NNMLA--SSLMDEGDAKGNTTVHFFAAVHRKEIFDDLSGRV 311 (360)
Q Consensus 265 A~~~~~~~-~~~L~--~~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~~~~ 311 (360)
|+..++.+ +++|+ +++++.+|..|+||+|+|++.++.++++.|.++.
T Consensus 179 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~ 228 (231)
T 3aji_A 179 ACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEE 228 (231)
T ss_dssp HHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccc
Confidence 99999998 88888 4899999999999999999999999999988764
No 8
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.2e-36 Score=268.50 Aligned_cols=225 Identities=18% Similarity=0.134 Sum_probs=205.6
Q ss_pred CCCCCCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHH
Q 039483 19 ETSQPQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIV 98 (360)
Q Consensus 19 ~~~~~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v 98 (360)
......+.+|||.||..|+.++++.|++. +..+ +..+..|.|| ||+|+..|+.+++
T Consensus 5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----------------------g~~~-~~~~~~g~t~-L~~A~~~~~~~~v 60 (237)
T 3b7b_A 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQA----------------------GANI-DTCSEDQRTP-LMEAAENNHLEAV 60 (237)
T ss_dssp CCSSCCSCCHHHHHHHHTCHHHHHHHHHT----------------------TCCT-TCCCTTCCCH-HHHHHHTTCHHHH
T ss_pred ccccCCCCCHHHHHHHcCcHHHHHHHHHc----------------------CCCc-CccCCCCCCH-HHHHHHhCCHHHH
Confidence 34456678999999999999999999884 5666 8889999999 9999999999999
Q ss_pred HHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhC-CCCCccccCCC
Q 039483 99 SVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSC-TSVSHIYMKAP 177 (360)
Q Consensus 99 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g-~~~~~~~~~d~ 177 (360)
++|+++|++++. .+..|. ||||+|+..|+ .+++++|++.| .+++. ++.
T Consensus 61 ~~Ll~~g~~~~~------------------~~~~g~---------t~L~~A~~~~~-~~~~~~Ll~~~~~~~~~---~~~ 109 (237)
T 3b7b_A 61 KYLIKAGALVDP------------------KDAEGS---------TCLHLAAKKGH-YEVVQYLLSNGQMDVNC---QDD 109 (237)
T ss_dssp HHHHTTTCCCCC------------------CCTTSC---------CHHHHHHHTTC-HHHHHHHHTTTCCCTTC---CCT
T ss_pred HHHHhCCCCCCC------------------CCCCCC---------cHHHHHHHcCC-HHHHHHHHhCCCCCccc---CCC
Confidence 999999999887 777775 78888889999 99999999998 78888 899
Q ss_pred CCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCccccccccCC
Q 039483 178 MERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKIDRTAAKIADKDR 257 (360)
Q Consensus 178 ~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~ 257 (360)
.|.||||+|+..++. +++++|++.+ .+++..+..|.||||+|+..|+.+++++|++.|+++ +.+|. .
T Consensus 110 ~g~t~L~~A~~~~~~----------~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~-~ 176 (237)
T 3b7b_A 110 GGWTPMIWATEYKHV----------DLVKLLLSKG-SDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNI-H 176 (237)
T ss_dssp TSCCHHHHHHHTTCH----------HHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCT-TCCCT-T
T ss_pred CCCCHHHHHHHcCCH----------HHHHHHHHCC-CCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCC-C
Confidence 999999999999999 9999999998 788999999999999999999999999999999999 99999 9
Q ss_pred CCchhhhhhcCCccc-cccccc--ccCccCCCCCCcHHHHHHHcCCHHHHHHHhhhh
Q 039483 258 KMTALHLVHGPKGCQ-NNMLAS--SLMDEGDAKGNTTVHFFAAVHRKEIFDDLSGRV 311 (360)
Q Consensus 258 g~tpLh~A~~~~~~~-~~~L~~--~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~~~~ 311 (360)
|.||||+|+..++.+ +++|+. ++++.+|..|+||+|+|++.++.+.+..+.+..
T Consensus 177 g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l 233 (237)
T 3b7b_A 177 GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKAL 233 (237)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988 888884 999999999999999999999987777666543
No 9
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4.2e-37 Score=276.14 Aligned_cols=214 Identities=17% Similarity=0.142 Sum_probs=159.4
Q ss_pred CCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHHHHh
Q 039483 25 IDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLIER 104 (360)
Q Consensus 25 ~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~ 104 (360)
+.||||.||..|+.++++.|++. +.++ +.+|..|.|| ||+|+..|+.+++++|+++
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~----------------------g~~~-~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~ 58 (261)
T 2xai_A 3 DWSPMHEAAIHGHQLSLRNLISQ----------------------GWAV-NIITADHVSP-LHEACLGGHLSCVKILLKH 58 (261)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHT----------------------TCCS-SCCCTTCCCH-HHHHHHHTCHHHHHHHHHT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHC----------------------CCCC-CCcCCCCCCH-HHHHHHcCCHHHHHHHHHC
Confidence 56899999999999999999984 6677 8899999999 9999999999999999999
Q ss_pred ccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHH
Q 039483 105 AKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQALH 184 (360)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh 184 (360)
|++++. .|..|. ||||+|+..|+ .+++++|+++|++++. +..|.||||
T Consensus 59 g~~~~~------------------~~~~g~---------t~L~~A~~~~~-~~~v~~Ll~~g~~~~~----~~~g~t~L~ 106 (261)
T 2xai_A 59 GAQVNG------------------VTADWH---------TPLFNACVSGS-WDCVNLLLQHGASVQP----ESDLASPIH 106 (261)
T ss_dssp TCCTTC------------------CCTTSC---------CHHHHHHHHTC-HHHHHHHHHTTCCSSC----SCTTCCHHH
T ss_pred CCCCCC------------------CCCCCC---------CHHHHHHHcCC-HHHHHHHHHCCCCCCC----CCCCCCHHH
Confidence 999988 788886 55666666676 7777777777766654 334667777
Q ss_pred HHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCccccccccCCCCchhhh
Q 039483 185 AATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKIDRTAAKIADKDRKMTALHL 264 (360)
Q Consensus 185 ~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~ 264 (360)
+|+..|+. +++++|++.+ .+++..|..|+||||+|+..|+.+++++|+++|+++ +. +. .|.||||+
T Consensus 107 ~A~~~~~~----------~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~-~~-~g~t~Lh~ 172 (261)
T 2xai_A 107 EAARRGHV----------ECVNSLIAYG-GNIDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQ-GK-GQDSPLHA 172 (261)
T ss_dssp HHHHTTCH----------HHHHHHHHTT-CCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCT-TC-CB-TTBCHHHH
T ss_pred HHHHcCcH----------HHHHHHHHcC-CCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC-CC-CC-CCCChHHH
Confidence 77777777 7777777766 666667777777777777777777777777777776 53 55 67777777
Q ss_pred hhcCCccc-ccccc--cccCccCCCCCCcHHHHHHHcCCHHHHHHHhhh
Q 039483 265 VHGPKGCQ-NNMLA--SSLMDEGDAKGNTTVHFFAAVHRKEIFDDLSGR 310 (360)
Q Consensus 265 A~~~~~~~-~~~L~--~~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~~~ 310 (360)
|+..++.+ +++|+ +++++.+|..|+||+|+|+..+ ++++.|..+
T Consensus 173 A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~ 219 (261)
T 2xai_A 173 VARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLER 219 (261)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc--cHHHHHHhc
Confidence 77766666 66666 3666777777777777776443 355555543
No 10
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.2e-37 Score=279.88 Aligned_cols=236 Identities=14% Similarity=0.045 Sum_probs=152.0
Q ss_pred CCCCCCCCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHH
Q 039483 17 NGETSQPQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCD 96 (360)
Q Consensus 17 ~~~~~~~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~ 96 (360)
+.+.+..++.++||+||+.|+.+.+..++....... . ...+. ...+ +..|..|.|| ||+||..|+.+
T Consensus 7 ~~~~~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~-~-------~~~l~---~~~~-~~~~~~g~t~-L~~Aa~~g~~~ 73 (285)
T 3d9h_A 7 HHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDF-P-------GIRLL---SNPL-MGDAVSDWSP-MHEAAIHGHQL 73 (285)
T ss_dssp -----------------------------------C-C-------SEECC---CCTT-CSSSCCSCCH-HHHHHHTTCHH
T ss_pred cccccchHHHHHHHHHhhcCCCCCcccCCCCccccc-c-------chhhh---hCcc-cCCCccCCCH-HHHHHHcCCHH
Confidence 345667889999999999999988888777432210 0 00011 2235 7788999999 99999999999
Q ss_pred HHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCC
Q 039483 97 IVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKA 176 (360)
Q Consensus 97 ~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d 176 (360)
++++|++.|++++. +|..|. ||||+|+..|+ .+++++|+++|++++. +|
T Consensus 74 ~v~~Ll~~g~~~~~------------------~~~~g~---------t~L~~A~~~g~-~~~v~~Ll~~ga~~~~---~~ 122 (285)
T 3d9h_A 74 SLRNLISQGWAVNI------------------ITADHV---------SPLHEACLGGH-LSCVKILLKHGAQVNG---VT 122 (285)
T ss_dssp HHHHHHHTTCCSCE------------------ECTTCC---------CHHHHHHHTTC-HHHHHHHHHTTCCSSC---CC
T ss_pred HHHHHHHCCCCCCC------------------cCCCCC---------CHHHHHHHCCc-HHHHHHHHHCCCCCCC---CC
Confidence 99999999999887 788886 66667777777 8888888888877777 77
Q ss_pred CCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCccccccccC
Q 039483 177 PMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKIDRTAAKIADKD 256 (360)
Q Consensus 177 ~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~ 256 (360)
..|.||||+|+..|+. +++++|++.+ .+++. +..|.||||+|+..|+.+++++|+++|+++ +.+|.
T Consensus 123 ~~g~t~L~~A~~~~~~----------~~v~~Ll~~g-~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~- 188 (285)
T 3d9h_A 123 ADWHTPLFNACVSGSW----------DCVNLLLQHG-ASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKIS- 188 (285)
T ss_dssp TTCCCHHHHHHHHTCH----------HHHHHHHHTT-CCSSC-SCTTSCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBT-
T ss_pred CCCCCHHHHHHHcCHH----------HHHHHHHHCC-CCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCC-
Confidence 7788888888888888 8888888777 44443 334778888888888888888888888777 77777
Q ss_pred CCCchhhhhhcCCccc-cccccc--ccCccCCCCCCcHHHHHHHcCCHHHHHHHhhhh
Q 039483 257 RKMTALHLVHGPKGCQ-NNMLAS--SLMDEGDAKGNTTVHFFAAVHRKEIFDDLSGRV 311 (360)
Q Consensus 257 ~g~tpLh~A~~~~~~~-~~~L~~--~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~~~~ 311 (360)
.|+||||+|+..++.+ +++|+. ++++. |..|+||||+|++.++.++++.|++..
T Consensus 189 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g 245 (285)
T 3d9h_A 189 HLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFG 245 (285)
T ss_dssp TTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 7888888887777777 777763 56653 677788888888888888888777763
No 11
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=3.6e-36 Score=271.78 Aligned_cols=215 Identities=16% Similarity=0.111 Sum_probs=175.7
Q ss_pred CCCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHH
Q 039483 22 QPQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVL 101 (360)
Q Consensus 22 ~~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~L 101 (360)
...+.+|||.||+.|+.++++.|++...+ +..+ +.+|..|.|| ||+||..|+.+++++|
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-------------------~~~~-~~~~~~g~t~-L~~A~~~g~~~~v~~L 64 (282)
T 1oy3_D 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAG-------------------HEYL-DLQNDLGQTA-LHLAAILGEASTVEKL 64 (282)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHHHTT-------------------SGGG-GCCCTTSCCH-HHHHHHHTCHHHHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCC-------------------cccc-cccCCCCCCH-HHHHHHcCCHHHHHHH
Confidence 45677999999999999999999984322 2236 7889999999 9999999999999999
Q ss_pred HHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCC-------------
Q 039483 102 IERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTS------------- 168 (360)
Q Consensus 102 l~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~------------- 168 (360)
+++|++++. +|..|. ||||+|+..|+ .+++++|+++|++
T Consensus 65 l~~ga~~~~------------------~~~~g~---------tpL~~A~~~~~-~~~v~~Ll~~~~~~~~~~~~~~~~~~ 116 (282)
T 1oy3_D 65 YAAGAGVLV------------------AERGGH---------TALHLACRVRA-HTCACVLLQPRPSHPRDASDTYLTQS 116 (282)
T ss_dssp HHTTCCSSC------------------CCTTSC---------CHHHHHTTTTC-HHHHHHHSSSCCSSCCCC--------
T ss_pred HHcCCCCCC------------------CCCCCC---------CHHHHHHHcCC-cchhHhhhccCCCCchhhHHHHhhcc
Confidence 999999988 788885 77778888899 9999999998765
Q ss_pred ----------------------------------CCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCcc
Q 039483 169 ----------------------------------VSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKS 214 (360)
Q Consensus 169 ----------------------------------~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~ 214 (360)
++. ++..|.||||+|+..|+. +++++|++.+ .
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~t~L~~A~~~g~~----------~~v~~Ll~~g-~ 182 (282)
T 1oy3_D 117 QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA---ENYDGHTPLHVAVIHKDA----------EMVRLLRDAG-A 182 (282)
T ss_dssp ---------------------------CCCGGGGTTC---CCTTSCCHHHHHHHTTCH----------HHHHHHHHHT-C
T ss_pred cccCcchhcchhhhccccccchhhhhhhhhhhhcCCC---cCCCCcCHHHHHHHcCCH----------HHHHHHHHcC-C
Confidence 445 778899999999999999 9999999998 7
Q ss_pred ccccccC-CCChHHHHHHHcCCHHHHHHHHhcCCccccccccCCCCchhhhhhcCCccc-ccccc--cccCccCCCCCCc
Q 039483 215 MIKGIDQ-CWWTPIHYAAYHRNYLILKLILKIDRTAAKIADKDRKMTALHLVHGPKGCQ-NNMLA--SSLMDEGDAKGNT 290 (360)
Q Consensus 215 ~i~~~d~-~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~-~~~L~--~~~~~~~d~~g~T 290 (360)
+++..+. .|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..++.+ +++|+ +++++.+|..|.|
T Consensus 183 ~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t 260 (282)
T 1oy3_D 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMY-GGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLS 260 (282)
T ss_dssp CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-----
T ss_pred CCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-ccccc-CCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccc
Confidence 7888875 4999999999999999999999999999 99999 9999999999999988 88888 4999999999999
Q ss_pred HHHHHHHcCCH
Q 039483 291 TVHFFAAVHRK 301 (360)
Q Consensus 291 pl~~A~~~~~~ 301 (360)
|+++|......
T Consensus 261 pl~~a~~~~~~ 271 (282)
T 1oy3_D 261 PCSSSGSDSDS 271 (282)
T ss_dssp -----------
T ss_pred cccccCCcccc
Confidence 99999876543
No 12
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.1e-35 Score=260.55 Aligned_cols=217 Identities=15% Similarity=0.145 Sum_probs=190.7
Q ss_pred CCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHHHHh
Q 039483 25 IDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLIER 104 (360)
Q Consensus 25 ~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~ 104 (360)
+.+|||.|++.|+.+.++.|++.. +... +.+|..|.|| ||+|+..|+.+++++|+++
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~---------------------~~~~-~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~ 58 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSK---------------------PSLL-LQKDQDGRIP-LHWSVSFQAHEITSFLLSK 58 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHC---------------------GGGT-TCCCTTSCCH-HHHHHHTTCHHHHHHHHHT
T ss_pred CccHHHHHHHhCCHHHHHHHHhcC---------------------cccc-ccCCCCCCCH-HHHHHHcCCHHHHHHHHhc
Confidence 358999999999999999999853 2233 6688999999 9999999999999999999
Q ss_pred ccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhC--CCCCccccCCCCCCcH
Q 039483 105 AKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSC--TSVSHIYMKAPMERQA 182 (360)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g--~~~~~~~~~d~~g~t~ 182 (360)
|++++.. ...|..|. ||||+|+..|+ .+++++|+++| ++++. ++..|.||
T Consensus 59 ~~~~~~~---------------~~~~~~g~---------t~L~~A~~~~~-~~~~~~Ll~~g~~~~~~~---~~~~g~t~ 110 (228)
T 2dzn_A 59 MENVNLD---------------DYPDDSGW---------TPFHIACSVGN-LEVVKSLYDRPLKPDLNK---ITNQGVTC 110 (228)
T ss_dssp CTTCCGG---------------GCCCTTSC---------CHHHHHHHHCC-HHHHHHHHSSSSCCCTTC---CCTTCCCH
T ss_pred ccccccc---------------ccCCCCCC---------CHHHHHHHcCC-HHHHHHHHhCCCCccccc---CCcCCCCH
Confidence 9555431 01556664 88888899999 99999999999 78888 89999999
Q ss_pred HHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcC-CccccccccCCCCch
Q 039483 183 LHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKID-RTAAKIADKDRKMTA 261 (360)
Q Consensus 183 Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g-~~~~~~~d~~~g~tp 261 (360)
||+|+..++. +++++|++.+ .+++.+|..|+||||+|+..|+.+++++|++.| +++ +.+|. .|+||
T Consensus 111 L~~A~~~~~~----------~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~d~-~g~t~ 177 (228)
T 2dzn_A 111 LHLAVGKKWF----------EVSQFLIENG-ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAV-NWQDK-QGWTP 177 (228)
T ss_dssp HHHHHHTTCH----------HHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCS-CCCCT-TSCCH
T ss_pred HHHHHHcCCH----------hHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccc-cCcCC-CCCCH
Confidence 9999999999 9999999998 889999999999999999999999999999999 888 99999 99999
Q ss_pred hhhhhcCCccc-ccccc---cccCccCCCCCCcHHHHHHHcCCHHHHHHHh
Q 039483 262 LHLVHGPKGCQ-NNMLA---SSLMDEGDAKGNTTVHFFAAVHRKEIFDDLS 308 (360)
Q Consensus 262 Lh~A~~~~~~~-~~~L~---~~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~ 308 (360)
||+|+..++.+ +++|+ +++++.+|..|+||+++|++. ++.+.|.
T Consensus 178 L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~ 225 (228)
T 2dzn_A 178 LFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFL 225 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHH
Confidence 99999999999 88888 499999999999999999765 4444443
No 13
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.7e-37 Score=275.25 Aligned_cols=216 Identities=17% Similarity=0.141 Sum_probs=142.1
Q ss_pred CCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCH-HHHHHHHH
Q 039483 25 IDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHC-DIVSVLIE 103 (360)
Q Consensus 25 ~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~-~~v~~Ll~ 103 (360)
..++|+.||+.|+.++|+.|++...... . .. ...+ +..+..|.|| ||.|+..++. .++++|++
T Consensus 11 ~~~~L~~A~~~G~~~~v~~LL~~~~~~~-~------------~~-~~~~-~~~~~~~~t~-L~~a~~~~~~~~~v~~Ll~ 74 (269)
T 4b93_B 11 EVEKLLRAVADGDLEMVRYLLEWTEEDL-E------------DA-EDTV-SAADPEFCHP-LCQCPKCAPAQKRLAKVPA 74 (269)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTCC--------------------------------------------------------
T ss_pred chhHHHHHHHcCCHHHHHHHHHCCCccc-c------------cc-cccc-cccCccCCCH-HHHHHHhCCHHHHHHHHHH
Confidence 3478999999999999999998321110 0 00 2334 5667777888 8888877765 46777888
Q ss_pred hccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHH
Q 039483 104 RAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQAL 183 (360)
Q Consensus 104 ~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~L 183 (360)
.|++++. +|.+|. ||||+|+..|+ .+++++|++.|++++. ++..|.||+
T Consensus 75 ~Gadvn~------------------~d~~G~---------TpLh~A~~~g~-~~~v~~Ll~~~a~~~~---~~~~g~t~l 123 (269)
T 4b93_B 75 SGLGVNV------------------TSQDGS---------SPLHVAALHGR-ADLIPLLLKHGANAGA---RNADQAVPL 123 (269)
T ss_dssp CCCCTTC------------------CCTTSC---------CHHHHHHHTTC-TTHHHHHHHTTCCTTC---CCTTCCCHH
T ss_pred CCCCCCC------------------cCCCCC---------CHHHHHHHcCc-HHHHHHHHhcCCCcCc---cCCCCCCcc
Confidence 8888777 677774 66677777788 8888888888888877 777888888
Q ss_pred HHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCccccccccCCCCchhh
Q 039483 184 HAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKIDRTAAKIADKDRKMTALH 263 (360)
Q Consensus 184 h~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~g~tpLh 263 (360)
|+|+..++. +++++|++.+ .+++.+|..|+||||+|+..|+.+++++|+++|+++ +.++. .|+||||
T Consensus 124 ~~a~~~~~~----------~~~~~Ll~~g-~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadv-n~~~~-~g~t~Lh 190 (269)
T 4b93_B 124 HLACQQGHF----------QVVKCLLDSN-AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASI-NASNN-KGNTALH 190 (269)
T ss_dssp HHHHHHTCH----------HHHHHHHHTT-CCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCT-TCBCT-TSCBHHH
T ss_pred ccccccChH----------HHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC-Ccccc-CCCcHHH
Confidence 888888888 8888888877 777788888888888888888888888888888888 88887 8888888
Q ss_pred hhhcCCccc-ccccc--cccCccCCCCCCcHHHHHHHcCC
Q 039483 264 LVHGPKGCQ-NNMLA--SSLMDEGDAKGNTTVHFFAAVHR 300 (360)
Q Consensus 264 ~A~~~~~~~-~~~L~--~~~~~~~d~~g~Tpl~~A~~~~~ 300 (360)
+|+..++.+ +++|+ +++++.+|..|+||||+|+++++
T Consensus 191 ~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 191 EAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp HHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence 888888777 77777 37788888888888888876553
No 14
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.1e-35 Score=279.37 Aligned_cols=225 Identities=16% Similarity=0.092 Sum_probs=201.0
Q ss_pred CCCCCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHH
Q 039483 20 TSQPQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVS 99 (360)
Q Consensus 20 ~~~~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~ 99 (360)
.....+.+|||.||..|+.++++.|++. +.++ +.+|..|.|| ||+||..|+.++|+
T Consensus 15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~----------------------g~~~-~~~d~~g~t~-L~~A~~~g~~~~v~ 70 (364)
T 3ljn_A 15 KSDDENMEKIHVAARKGQTDEVRRLIET----------------------GVSP-TIQNRFGCTA-LHLACKFGCVDTAK 70 (364)
T ss_dssp -CCHHHHHHHHHHHHHTCHHHHHHHHHT----------------------TCCT-TCCCTTCCCH-HHHHHHHCCHHHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHc----------------------CCCc-cccCCCCCcH-HHHHHHcCCHHHHH
Confidence 3445667999999999999999999984 6677 8899999999 99999999999999
Q ss_pred HHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhh----CCCCCcc---
Q 039483 100 VLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKS----CTSVSHI--- 172 (360)
Q Consensus 100 ~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~----g~~~~~~--- 172 (360)
+|+++|++++. .+| .||||+|+..|+ .+++++|++. |.+++.+
T Consensus 71 ~Ll~~g~~~~~--------------------~~g---------~t~L~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~~~~ 120 (364)
T 3ljn_A 71 YLASVGEVHSL--------------------WHG---------QKPIHLAVMANK-TDLVVALVEGAKERGQMPESLLNE 120 (364)
T ss_dssp HHHHHCCCCCC--------------------BTT---------BCHHHHHHHTTC-HHHHHHHHHHHHHHTCCHHHHHTC
T ss_pred HHHHCCCCccc--------------------cCC---------CCHHHHHHHcCC-HHHHHHHHHhccccCCCHHHHHhh
Confidence 99999996543 245 488899999999 9999999998 6554320
Q ss_pred -----------ccCCCCCCcHHHHHHhcC--CcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHH
Q 039483 173 -----------YMKAPMERQALHAATMHI--DLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLIL 239 (360)
Q Consensus 173 -----------~~~d~~g~t~Lh~A~~~~--~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v 239 (360)
..++..|.||||+|+..| +. +++++|++.+ .+++..|..|+||||+|+..|+.+++
T Consensus 121 ~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~----------~~v~~Ll~~g-a~~~~~d~~g~t~L~~A~~~g~~~~v 189 (364)
T 3ljn_A 121 CDEREVNEIGSHVKHCKGQTALHWCVGLGPEYL----------EMIKILVQLG-ASPTAKDKADETPLMRAMEFRNREAL 189 (364)
T ss_dssp CCCCCEEEETTEEEEESCCCHHHHHHHSCGGGH----------HHHHHHHHHT-CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred cchHhhhhhccccCCCCCCCHHHHHHHcCCchH----------HHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCCHHHH
Confidence 015668999999999999 99 9999999998 88999999999999999999999999
Q ss_pred HHHHhcCCc-----cccccccCCCCchhhhhhcCCccc-cccccc--ccCccCCCCCCcHHHHHHHcCCHHHHHHHhhhh
Q 039483 240 KLILKIDRT-----AAKIADKDRKMTALHLVHGPKGCQ-NNMLAS--SLMDEGDAKGNTTVHFFAAVHRKEIFDDLSGRV 311 (360)
Q Consensus 240 ~~Ll~~g~~-----~~~~~d~~~g~tpLh~A~~~~~~~-~~~L~~--~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~~~~ 311 (360)
++|+++|++ + +..|. .|+||||+|+..++.+ +++|+. ++++.+|..|+||||+|++.|+.++++.|+++.
T Consensus 190 ~~Ll~~g~~~~~~~~-~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~ 267 (364)
T 3ljn_A 190 DLMMDTVPSKSSLRL-DYANK-QGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKT 267 (364)
T ss_dssp HHHHHHCSCSSSCCT-TCCCT-TCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHS
T ss_pred HHHHhcccccccccc-cccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcC
Confidence 999999998 8 99999 9999999999999999 899984 899999999999999999999999999999874
No 15
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=7.1e-36 Score=282.07 Aligned_cols=198 Identities=17% Similarity=0.125 Sum_probs=182.5
Q ss_pred ccccccccCCCCCCCCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHH
Q 039483 67 NCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPL 146 (360)
Q Consensus 67 ~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L 146 (360)
.. +.++ +.+|..|.|| ||+|+..|+.++|++|+++|++++. .|..|. |||
T Consensus 154 ~~-ga~v-n~~d~~g~Tp-L~~A~~~g~~~iv~~Ll~~ga~~~~------------------~~~~g~---------t~L 203 (373)
T 2fo1_E 154 AA-GADV-NAMDCDENTP-LMLAVLARRRRLVAYLMKAGADPTI------------------YNKSER---------SAL 203 (373)
T ss_dssp HT-CCCT-TCCCTTSCCH-HHHHHHHTCHHHHHHHHHTTCCSCC------------------CCTTCC---------CHH
T ss_pred hc-CCCC-cCCCCCCCCH-HHHHHHcChHHHHHHHHHCCCCCcc------------------cCCCCC---------CHH
Confidence 45 8889 9999999999 9999999999999999999999988 788885 788
Q ss_pred HHHHhcCCcHHHHHHHHhhC---CCCCccccCCCCCCcHHHHHHhcC---CcccccccCChHHHHHHHHhcCcccccc--
Q 039483 147 CMAAEYEHSSHTVVAILKSC---TSVSHIYMKAPMERQALHAATMHI---DLCKFNHTLSNDCAVQQLFEGKKSMIKG-- 218 (360)
Q Consensus 147 ~~A~~~g~~~~~~~~Ll~~g---~~~~~~~~~d~~g~t~Lh~A~~~~---~~~~~~~~~~~~~~~~~Ll~~~~~~i~~-- 218 (360)
|+|+..|+ .+++++|++++ .+++. +|..|.||||+|+..+ +. +++++|++.+ .+++.
T Consensus 204 ~~A~~~g~-~~~v~~Ll~~~~~~~~~~~---~d~~g~t~L~~A~~~~~~~~~----------~~v~~Ll~~g-~~~~~~~ 268 (373)
T 2fo1_E 204 HQAAANRD-FGMMVYMLNSTKLKGDIEE---LDRNGMTALMIVAHNEGRDQV----------ASAKLLVEKG-AKVDYDG 268 (373)
T ss_dssp HHHHHTTC-HHHHHHHTTSHHHHHTTSC---CCTTSCCHHHHHHHSCSTTHH----------HHHHHHHHHT-CCSSCCS
T ss_pred HHHHHCCC-HHHHHHHHhcCccccChhh---cCCCCCCHHHHHHHhCCcchH----------HHHHHHHHCC-CCccccc
Confidence 88899999 99999999988 78888 9999999999999988 78 9999999998 66664
Q ss_pred ------ccCCCChHHHHHHHcCCHHHHHHHHhcC-CccccccccCCCCchhhhhhcCCccc-ccccc--cccCccCCCCC
Q 039483 219 ------IDQCWWTPIHYAAYHRNYLILKLILKID-RTAAKIADKDRKMTALHLVHGPKGCQ-NNMLA--SSLMDEGDAKG 288 (360)
Q Consensus 219 ------~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g-~~~~~~~d~~~g~tpLh~A~~~~~~~-~~~L~--~~~~~~~d~~g 288 (360)
.|..|+||||+|+..|+.+++++|++.+ +++ +.+|. .|+||||+|+..++.+ +++|+ +++++.+|..|
T Consensus 269 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-n~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g 346 (373)
T 2fo1_E 269 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK-DKQDE-DGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATD 346 (373)
T ss_dssp GGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSS
T ss_pred ccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCc-cCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCC
Confidence 5779999999999999999999999776 899 99999 9999999999999999 88888 49999999999
Q ss_pred CcHHHHHHHcCCHHHHHHHhhhh
Q 039483 289 NTTVHFFAAVHRKEIFDDLSGRV 311 (360)
Q Consensus 289 ~Tpl~~A~~~~~~~i~~~l~~~~ 311 (360)
+||||+|+.+|+.++++.|.++.
T Consensus 347 ~t~l~~A~~~g~~~iv~~Ll~~~ 369 (373)
T 2fo1_E 347 HTARQLAQANNHHNIVDIFDRCR 369 (373)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTTC
T ss_pred CCHHHHHHHcCCHHHHHHHHhcC
Confidence 99999999999999999998864
No 16
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.2e-34 Score=269.61 Aligned_cols=223 Identities=21% Similarity=0.217 Sum_probs=196.3
Q ss_pred CCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHHH
Q 039483 23 PQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLI 102 (360)
Q Consensus 23 ~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll 102 (360)
.+..++||.||+.|+.+.++.++.. . +..+ +.+|..|.|| ||+|+..|+.+++++|+
T Consensus 22 ~~~~~~L~~A~~~g~~~~v~~ll~~----~-----------------~~~~-~~~d~~g~t~-L~~A~~~g~~~~v~~Ll 78 (351)
T 3utm_A 22 EYKKDELLEAARSGNEEKLMALLTP----L-----------------NVNC-HASDGRKSTP-LHLAAGYNRVRIVQLLL 78 (351)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHCCT----T-----------------TTTC-CCSSTTCCCH-HHHHHHTTCHHHHHHHH
T ss_pred cccchhHHHHHHcCCHHHHHHHHHh----c-----------------CCCc-ccCCCCCCCH-HHHHHHcCCHHHHHHHH
Confidence 3456899999999999999999772 1 5566 8889999999 99999999999999999
Q ss_pred HhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcH
Q 039483 103 ERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQA 182 (360)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~ 182 (360)
++|++++. .|..|. ||||+|+..|+ .+++++|+++|++++. ++..|.||
T Consensus 79 ~~g~~~~~------------------~~~~g~---------t~L~~A~~~g~-~~iv~~Ll~~g~~~~~---~~~~g~t~ 127 (351)
T 3utm_A 79 QHGADVHA------------------KDKGGL---------VPLHNACSYGH-YEVTELLLKHGACVNA---MDLWQFTP 127 (351)
T ss_dssp HTTCCTTC------------------CCTTCC---------CHHHHHHHTTC-HHHHHHHHHTTCCTTC---CCTTCCCH
T ss_pred HcCCCCCc------------------cCCCCC---------cHHHHHHHCCC-HHHHHHHHHCCCCCCC---CCCCCCCH
Confidence 99999988 788885 77777888888 9999999999988888 88889999
Q ss_pred HHHHHhcCCcccccccCChHHHHHHHHhcCccccccc-------------------------------------------
Q 039483 183 LHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGI------------------------------------------- 219 (360)
Q Consensus 183 Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~------------------------------------------- 219 (360)
||+|+..|+. +++++|++.+ .+++..
T Consensus 128 L~~A~~~~~~----------~~v~~Ll~~g-~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (351)
T 3utm_A 128 LHEAASKNRV----------EVCSLLLSHG-ADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKK 196 (351)
T ss_dssp HHHHHHTTCH----------HHHHHHHHTT-CCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHcCCH----------HHHHHHHHcC-CCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHH
Confidence 9999999998 9999998887 444432
Q ss_pred -----------cCCCChHHHHHHHc---CCHHHHHHHHhcCCccccccccCCCCchhhhhhcCCccc-cccccc--ccCc
Q 039483 220 -----------DQCWWTPIHYAAYH---RNYLILKLILKIDRTAAKIADKDRKMTALHLVHGPKGCQ-NNMLAS--SLMD 282 (360)
Q Consensus 220 -----------d~~g~t~Lh~A~~~---~~~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~-~~~L~~--~~~~ 282 (360)
+..|.||||+|+.. +..+++++|++.|+++ +.++. .|+||||+|+..++.+ +++|+. ++++
T Consensus 197 ~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n 274 (351)
T 3utm_A 197 TLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV-NEKNK-DFMTPLHVAAERAHNDVMEVLHKHGAKMN 274 (351)
T ss_dssp HTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc-CCcCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 35678999999999 5589999999999999 99999 9999999999999999 888884 8999
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHhhhhc
Q 039483 283 EGDAKGNTTVHFFAAVHRKEIFDDLSGRVK 312 (360)
Q Consensus 283 ~~d~~g~Tpl~~A~~~~~~~i~~~l~~~~~ 312 (360)
.+|..|+||||+|++.|+.++++.|+++..
T Consensus 275 ~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga 304 (351)
T 3utm_A 275 ALDSLGQTALHRAALAGHLQTCRLLLSYGS 304 (351)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CcCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 999999999999999999999999998853
No 17
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.6e-34 Score=253.07 Aligned_cols=223 Identities=20% Similarity=0.210 Sum_probs=202.4
Q ss_pred CCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHHH
Q 039483 23 PQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLI 102 (360)
Q Consensus 23 ~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll 102 (360)
.+..++|+.|++.|+.+.++.|++. +.++ +.++..|.|| ||+|+..|+.+++++|+
T Consensus 7 ~~~~~~l~~A~~~g~~~~~~~Ll~~----------------------g~~~-~~~~~~g~t~-L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 7 DYSTWDIVKATQYGIYERCRELVEA----------------------GYDV-RQPDKENVTL-LHWAAINNRIDLVKYYI 62 (240)
T ss_dssp CGGGCCHHHHHHTTCHHHHHHHHHT----------------------TCCT-TCCCTTSCCH-HHHHHHTTCHHHHHHHH
T ss_pred cccchHHHHHHHcCChHHHHHHHHc----------------------CCCc-CCCCCCCCCH-HHHHHHhCCHHHHHHHH
Confidence 4455789999999999999999984 5666 8889999999 99999999999999999
Q ss_pred HhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcH
Q 039483 103 ERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQA 182 (360)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~ 182 (360)
++|++++. ..+..| .||||+|+..|+ .+++++|++.|++++. ++..|.||
T Consensus 63 ~~~~~~~~-----------------~~~~~~---------~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~---~~~~g~t~ 112 (240)
T 3eu9_A 63 SKGAIVDQ-----------------LGGDLN---------STPLHWATRQGH-LSMVVQLMKYGADPSL---IDGEGCSC 112 (240)
T ss_dssp HTTCCTTC-----------------CBTTTT---------BCHHHHHHHHTC-HHHHHHHHHTTCCTTC---CCTTSCCH
T ss_pred HcCCcchh-----------------hcCCcC---------CChhHHHHHcCC-HHHHHHHHHcCCCCcc---cCCCCCCH
Confidence 99998876 244446 488888999999 9999999999999999 99999999
Q ss_pred HHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCC-HHHHHHHHhcCCccccccccCCCCch
Q 039483 183 LHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRN-YLILKLILKIDRTAAKIADKDRKMTA 261 (360)
Q Consensus 183 Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~-~~~v~~Ll~~g~~~~~~~d~~~g~tp 261 (360)
||+|+..|+. +++++|++.+ .+++..+..|.||||+|+..++ .+++++|++.|+++ +..+...|.||
T Consensus 113 l~~A~~~~~~----------~~~~~Ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~-~~~~~~~g~t~ 180 (240)
T 3eu9_A 113 IHLAAQFGHT----------SIVAYLIAKG-QDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV-NLGDKYHKNTA 180 (240)
T ss_dssp HHHHHHTTCH----------HHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCT-TCCCTTTCCCH
T ss_pred HHHHHHcCHH----------HHHHHHHhcC-CCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCc-chhhccCCCcH
Confidence 9999999999 9999999998 7889999999999999997776 89999999999999 77775489999
Q ss_pred hhhhhcCCccc-cccccc--ccCccCCCCCCcHHHHHHHcCCHHHHHHHhhhh
Q 039483 262 LHLVHGPKGCQ-NNMLAS--SLMDEGDAKGNTTVHFFAAVHRKEIFDDLSGRV 311 (360)
Q Consensus 262 Lh~A~~~~~~~-~~~L~~--~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~~~~ 311 (360)
||+|+..++.+ +++|+. ++++.+|..|+||+++|++.|+.++++.|.+..
T Consensus 181 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence 99999999999 888884 899999999999999999999999999998875
No 18
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=7.3e-35 Score=265.92 Aligned_cols=219 Identities=18% Similarity=0.149 Sum_probs=192.0
Q ss_pred CCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHHHH
Q 039483 24 QIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLIE 103 (360)
Q Consensus 24 ~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~ 103 (360)
...++||.||..|+.+.++.|++. +.++ +..|..|.|| ||+||..|+.+++++|++
T Consensus 39 ~~~t~l~~A~~~g~~~~v~~Ll~~----------------------g~~~-~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~ 94 (299)
T 1s70_B 39 DDGAVFLAACSSGDTEEVLRLLER----------------------GADI-NYANVDGLTA-LHQACIDDNVDMVKFLVE 94 (299)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHH----------------------CCCT-TCBCTTCCBH-HHHHHHTTCHHHHHHHHH
T ss_pred CCccHHHHHHHcCCHHHHHHHHHc----------------------CCCC-cccCCCCCCH-HHHHHHcCCHHHHHHHHH
Confidence 346899999999999999999984 6677 8899999999 999999999999999999
Q ss_pred hccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHH
Q 039483 104 RAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQAL 183 (360)
Q Consensus 104 ~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~L 183 (360)
+|++++. .|..|. ||||+|+..|+ .+++++|+++|++++. ++..|.|||
T Consensus 95 ~ga~~~~------------------~~~~g~---------tpL~~A~~~g~-~~~v~~Ll~~g~~~~~---~~~~g~t~l 143 (299)
T 1s70_B 95 NGANINQ------------------PDNEGW---------IPLHAAASCGY-LDIAEYLISQGAHVGA---VNSEGDTPL 143 (299)
T ss_dssp TTCCTTC------------------CCTTSC---------CHHHHHHHHTC-HHHHHHHHHTTCCTTC---CCTTSCCHH
T ss_pred CCCCCCC------------------CCCCCC---------cHHHHHHHcCC-HHHHHHHHhCCCCCCC---cCCCCCCHH
Confidence 9999988 778875 78888889999 9999999999999999 999999999
Q ss_pred HHHHhcCCcccccccCChHHHHHHHHhcCccccc--------------------------cccCCCChHHHHHHHcCCHH
Q 039483 184 HAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIK--------------------------GIDQCWWTPIHYAAYHRNYL 237 (360)
Q Consensus 184 h~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~--------------------------~~d~~g~t~Lh~A~~~~~~~ 237 (360)
|+|+..++. ++++.++.....+++ ..+..|.||||+|+..|+.+
T Consensus 144 ~~A~~~~~~----------~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~ 213 (299)
T 1s70_B 144 DIAEEEAME----------ELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTE 213 (299)
T ss_dssp HHCCSHHHH----------HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHH
T ss_pred HHHHhcchH----------HHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHH
Confidence 999999998 888877755333322 24578999999999999999
Q ss_pred HHHHHHhcCCccccccccCCCCchhhhhhcCCccc-ccccc--cccCccCCCCCCcHHHHHHHcCCHHHHHHHhhh
Q 039483 238 ILKLILKIDRTAAKIADKDRKMTALHLVHGPKGCQ-NNMLA--SSLMDEGDAKGNTTVHFFAAVHRKEIFDDLSGR 310 (360)
Q Consensus 238 ~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~-~~~L~--~~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~~~ 310 (360)
++++|+++|+++ +.+|. .|.||||+|+..++.+ +++|+ +++++.+|..|+||+|+|++. ..+.++.+.+.
T Consensus 214 ~v~~Ll~~g~d~-~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~ 286 (299)
T 1s70_B 214 VLKLLIQARYDV-NIKDY-DGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED-ILGYLEELQKK 286 (299)
T ss_dssp HHHHHHTTTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG-GGHHHHHHHHH
T ss_pred HHHHHHHcCCCC-CCcCC-CCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH-HHHHHHHHHHH
Confidence 999999999999 99999 9999999999999999 88888 489999999999999999754 34444444443
No 19
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=8.7e-34 Score=247.74 Aligned_cols=205 Identities=16% Similarity=0.159 Sum_probs=186.7
Q ss_pred cccc-ccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHH
Q 039483 61 SCIS-TSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHE 139 (360)
Q Consensus 61 ~~v~-l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~ 139 (360)
++++ |... +..+....|..|.|| ||+|+..|+.+++++|+++|++++. .|..|.
T Consensus 5 ~~i~~Ll~~-g~~~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~------------------~~~~g~----- 59 (223)
T 2f8y_A 5 AVISDFIYQ-GASLHNQTDRTGETA-LHLAARYSRSDAAKRLLEASADANI------------------QDNMGR----- 59 (223)
T ss_dssp CCEETTEET-TCCTTCCCTTTCCCH-HHHHHHTTCHHHHHHHHHTTCCTTC------------------CCTTSC-----
T ss_pred HHHHHHHHc-CCCcccccCCCCCch-HHHHHHcCCHHHHHHHHHcCCCCCC------------------cCCCCC-----
Confidence 4555 5555 566524458999999 9999999999999999999999987 777875
Q ss_pred hhhcCHHHHHHhcCCcHHHHHHHHhhCC-CCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCcccccc
Q 039483 140 AYNKIPLCMAAEYEHSSHTVVAILKSCT-SVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKG 218 (360)
Q Consensus 140 a~~~t~L~~A~~~g~~~~~~~~Ll~~g~-~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~ 218 (360)
||||+|+..|+ .+++++|++.+. +++. ++..|.||||+|+..++. +++++|++.+ .+++.
T Consensus 60 ----t~L~~A~~~~~-~~~v~~Ll~~~~~~~~~---~~~~g~t~L~~A~~~~~~----------~~~~~Ll~~g-~~~~~ 120 (223)
T 2f8y_A 60 ----TPLHAAVSADA-QGVFQILIRNRATDLDA---RMHDGTTPLILAARLAVE----------GMLEDLINSH-ADVNA 120 (223)
T ss_dssp ----CHHHHHHHTTC-HHHHHHHHHBTTSCTTC---CCTTCCCHHHHHHHHTCH----------HHHHHHHHTT-CCTTC
T ss_pred ----CHHHHHHHcCC-HHHHHHHHHcCCCCccc---CCCCCCcHHHHHHHhCcH----------HHHHHHHHcC-CCCcC
Confidence 88888899999 999999999987 7787 899999999999999999 9999999998 78999
Q ss_pred ccCCCChHHHHHHHcCCHHHHHHHHhcCCccccccccCCCCchhhhhhcCCccc-cccccc--ccCccCCCCCCcHHHHH
Q 039483 219 IDQCWWTPIHYAAYHRNYLILKLILKIDRTAAKIADKDRKMTALHLVHGPKGCQ-NNMLAS--SLMDEGDAKGNTTVHFF 295 (360)
Q Consensus 219 ~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~-~~~L~~--~~~~~~d~~g~Tpl~~A 295 (360)
.|..|+||||+|+..|+.+++++|+++|+++ +.++. .|.||||+|+..++.+ +++|+. ++++.+|..|.||+++|
T Consensus 121 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 198 (223)
T 2f8y_A 121 VDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNN-REETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIA 198 (223)
T ss_dssp BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHH
Confidence 9999999999999999999999999999999 99999 9999999999999998 888884 89999999999999999
Q ss_pred HHcCCHHHHHHHhhhh
Q 039483 296 AAVHRKEIFDDLSGRV 311 (360)
Q Consensus 296 ~~~~~~~i~~~l~~~~ 311 (360)
++.++.++++.|.++.
T Consensus 199 ~~~~~~~i~~~L~~~g 214 (223)
T 2f8y_A 199 QERMHHDIVRLLDEYN 214 (223)
T ss_dssp HHTTCHHHHHHHHHTT
T ss_pred HHhcchHHHHHHHHcC
Confidence 9999999999998874
No 20
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.3e-33 Score=262.65 Aligned_cols=223 Identities=17% Similarity=0.159 Sum_probs=180.1
Q ss_pred CCCCCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHH
Q 039483 20 TSQPQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVS 99 (360)
Q Consensus 20 ~~~~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~ 99 (360)
.....+.+|||.||..|+.++++.|++. +.++ +.+|..|.|| ||+|+..|+.++++
T Consensus 53 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----------------------g~~~-~~~~~~g~t~-L~~A~~~g~~~iv~ 108 (351)
T 3utm_A 53 ASDGRKSTPLHLAAGYNRVRIVQLLLQH----------------------GADV-HAKDKGGLVP-LHNACSYGHYEVTE 108 (351)
T ss_dssp CSSTTCCCHHHHHHHTTCHHHHHHHHHT----------------------TCCT-TCCCTTCCCH-HHHHHHTTCHHHHH
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHHc----------------------CCCC-CccCCCCCcH-HHHHHHCCCHHHHH
Confidence 3456688999999999999999999984 5556 7777777888 88888888888888
Q ss_pred HHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccc------
Q 039483 100 VLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIY------ 173 (360)
Q Consensus 100 ~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~------ 173 (360)
+|+++|++++. .|..|. ||||+|+..|+ .+++++|+++|++++...
T Consensus 109 ~Ll~~g~~~~~------------------~~~~g~---------t~L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~g~~~ 160 (351)
T 3utm_A 109 LLLKHGACVNA------------------MDLWQF---------TPLHEAASKNR-VEVCSLLLSHGADPTLVNCHGKSA 160 (351)
T ss_dssp HHHHTTCCTTC------------------CCTTCC---------CHHHHHHHTTC-HHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred HHHHCCCCCCC------------------CCCCCC---------CHHHHHHHcCC-HHHHHHHHHcCCCCccccCCCCcc
Confidence 88888777776 555553 55555555666 666666666665554300
Q ss_pred ---------------------------------------------cCCCCCCcHHHHHHhcC---CcccccccCChHHHH
Q 039483 174 ---------------------------------------------MKAPMERQALHAATMHI---DLCKFNHTLSNDCAV 205 (360)
Q Consensus 174 ---------------------------------------------~~d~~g~t~Lh~A~~~~---~~~~~~~~~~~~~~~ 205 (360)
..+..|.||||+|+..+ .. +++
T Consensus 161 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~----------~~~ 230 (351)
T 3utm_A 161 VDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRK----------QVA 230 (351)
T ss_dssp HHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHH----------HHH
T ss_pred hHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHH----------HHH
Confidence 03456789999999884 46 899
Q ss_pred HHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCccccccccCCCCchhhhhhcCCccc-ccccc--cccCc
Q 039483 206 QQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKIDRTAAKIADKDRKMTALHLVHGPKGCQ-NNMLA--SSLMD 282 (360)
Q Consensus 206 ~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~-~~~L~--~~~~~ 282 (360)
++|++.+ .+++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..++.+ +++|+ +++++
T Consensus 231 ~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-n~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~gad~~ 307 (351)
T 3utm_A 231 ELLLRKG-ANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM-NALDS-LGQTALHRAALAGHLQTCRLLLSYGSDPS 307 (351)
T ss_dssp HHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred HHHHHcC-CCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCC-CCCCHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence 9999999 889999999999999999999999999999999999 99999 9999999999999999 89998 48999
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHhhhh
Q 039483 283 EGDAKGNTTVHFFAAVHRKEIFDDLSGRV 311 (360)
Q Consensus 283 ~~d~~g~Tpl~~A~~~~~~~i~~~l~~~~ 311 (360)
.+|..|+||+++| ..++++.|.+..
T Consensus 308 ~~~~~g~tal~~a----~~~~~~~l~~~~ 332 (351)
T 3utm_A 308 IISLQGFTAAQMG----NEAVQQILSEST 332 (351)
T ss_dssp CCCTTSCCHHHHS----CHHHHHHHHHC-
T ss_pred CcCCCCCChhhhh----hHHHHHHHHhcc
Confidence 9999999999998 566777666553
No 21
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=7.5e-34 Score=256.51 Aligned_cols=197 Identities=18% Similarity=0.134 Sum_probs=177.6
Q ss_pred CCCCCCCCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCC
Q 039483 75 QPVTAKGDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEH 154 (360)
Q Consensus 75 ~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~ 154 (360)
+.+|..|.|| ||+||..|+.++|++|+++|++.+. ++.+|..|. ||||+|+..|+
T Consensus 3 ~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~---------------~~~~~~~g~---------t~L~~A~~~g~ 57 (282)
T 1oy3_D 3 GYVTEDGDTA-LHLAVIHQHEPFLDFLLGFSAGHEY---------------LDLQNDLGQ---------TALHLAAILGE 57 (282)
T ss_dssp CCCCTTCCCH-HHHHHHTTCHHHHHHHHHHHTTSGG---------------GGCCCTTSC---------CHHHHHHHHTC
T ss_pred CccCCCCCcH-HHHHHHcCCHHHHHHHHhcCCCccc---------------ccccCCCCC---------CHHHHHHHcCC
Confidence 6789999999 9999999999999999999987321 223778885 88888899999
Q ss_pred cHHHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCcc--------------------
Q 039483 155 SSHTVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKS-------------------- 214 (360)
Q Consensus 155 ~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~-------------------- 214 (360)
.+++++|+++|++++. ++..|.||||+|+..|+. +++++|++.+..
T Consensus 58 -~~~v~~Ll~~ga~~~~---~~~~g~tpL~~A~~~~~~----------~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (282)
T 1oy3_D 58 -ASTVEKLYAAGAGVLV---AERGGHTALHLACRVRAH----------TCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123 (282)
T ss_dssp -HHHHHHHHHTTCCSSC---CCTTSCCHHHHHTTTTCH----------HHHHHHSSSCCSSCCCC---------------
T ss_pred -HHHHHHHHHcCCCCCC---CCCCCCCHHHHHHHcCCc----------chhHhhhccCCCCchhhHHHHhhcccccCcch
Confidence 9999999999999999 999999999999999999 999999987622
Q ss_pred --------------------------ccccccCCCChHHHHHHHcCCHHHHHHHHhcCCccccccccCCCCchhhhhhcC
Q 039483 215 --------------------------MIKGIDQCWWTPIHYAAYHRNYLILKLILKIDRTAAKIADKDRKMTALHLVHGP 268 (360)
Q Consensus 215 --------------------------~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~ 268 (360)
+++..+..|+||||+|+..|+.+++++|+++|+++ +..+...|+||||+|+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~ 202 (282)
T 1oy3_D 124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEA 202 (282)
T ss_dssp --------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHT
T ss_pred hcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHc
Confidence 36677889999999999999999999999999999 888852599999999999
Q ss_pred Cccc-ccccc--cccCccCCCCCCcHHHHHHHcCCHHHHHHHhhhh
Q 039483 269 KGCQ-NNMLA--SSLMDEGDAKGNTTVHFFAAVHRKEIFDDLSGRV 311 (360)
Q Consensus 269 ~~~~-~~~L~--~~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~~~~ 311 (360)
++.+ +++|+ +++++.+|..|+||||+|++.|+.++++.|+++.
T Consensus 203 ~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g 248 (282)
T 1oy3_D 203 QAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG 248 (282)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcC
Confidence 9999 88888 4999999999999999999999999999999875
No 22
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=5e-33 Score=252.92 Aligned_cols=218 Identities=17% Similarity=0.139 Sum_probs=200.0
Q ss_pred CCCCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHH
Q 039483 21 SQPQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSV 100 (360)
Q Consensus 21 ~~~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~ 100 (360)
....+.+|||.||..|+.++++.|++. +.++ +.+|..|.|| ||+|+..|+.+++++
T Consensus 55 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~----------------------g~~~-~~~~~~g~t~-L~~A~~~g~~~~v~~ 110 (285)
T 3d9h_A 55 DAVSDWSPMHEAAIHGHQLSLRNLISQ----------------------GWAV-NIITADHVSP-LHEACLGGHLSCVKI 110 (285)
T ss_dssp SSCCSCCHHHHHHHTTCHHHHHHHHHT----------------------TCCS-CEECTTCCCH-HHHHHHTTCHHHHHH
T ss_pred CCccCCCHHHHHHHcCCHHHHHHHHHC----------------------CCCC-CCcCCCCCCH-HHHHHHCCcHHHHHH
Confidence 456678999999999999999999984 5667 8899999999 999999999999999
Q ss_pred HHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCC
Q 039483 101 LIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMER 180 (360)
Q Consensus 101 Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~ 180 (360)
|+++|++++. .|..|. ||||+|+..|+ .+++++|++.|++++. . ..|.
T Consensus 111 Ll~~ga~~~~------------------~~~~g~---------t~L~~A~~~~~-~~~v~~Ll~~g~~~~~---~-~~g~ 158 (285)
T 3d9h_A 111 LLKHGAQVNG------------------VTADWH---------TPLFNACVSGS-WDCVNLLLQHGASVQP---E-SDLA 158 (285)
T ss_dssp HHHTTCCSSC------------------CCTTCC---------CHHHHHHHHTC-HHHHHHHHHTTCCSSC---S-CTTS
T ss_pred HHHCCCCCCC------------------CCCCCC---------CHHHHHHHcCH-HHHHHHHHHCCCCCCC---C-CCCC
Confidence 9999999988 788885 78888889999 9999999999999876 3 4599
Q ss_pred cHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCccccccccCCCCc
Q 039483 181 QALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKIDRTAAKIADKDRKMT 260 (360)
Q Consensus 181 t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~g~t 260 (360)
||||+|+..|+. +++++|++.+ .+++..|..|+||||+|+..|+.+++++|++.|+++ +. +. .|+|
T Consensus 159 t~L~~A~~~g~~----------~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~-~~-~g~t 224 (285)
T 3d9h_A 159 SPIHEAARRGHV----------ECVNSLIAYG-GNIDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQ-GK-GQDS 224 (285)
T ss_dssp CHHHHHHHHTCH----------HHHHHHHHTT-CCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCT-TC-CB-TTBC
T ss_pred CHHHHHHHcCCH----------HHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCC-CC-CC-CCCC
Confidence 999999999999 9999999999 789999999999999999999999999999999999 74 77 9999
Q ss_pred hhhhhhcCCccc-ccccc--cccCccCCCCCCcHHHHHHHcCCHHHHHHHhhh
Q 039483 261 ALHLVHGPKGCQ-NNMLA--SSLMDEGDAKGNTTVHFFAAVHRKEIFDDLSGR 310 (360)
Q Consensus 261 pLh~A~~~~~~~-~~~L~--~~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~~~ 310 (360)
|||+|+..++.+ +++|+ +++++.+|..|+||||+|+ ++.++++.|+++
T Consensus 225 ~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~ 275 (285)
T 3d9h_A 225 PLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLER 275 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHh
Confidence 999999999999 88888 4999999999999999999 567899988887
No 23
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.4e-32 Score=255.57 Aligned_cols=251 Identities=16% Similarity=0.054 Sum_probs=203.5
Q ss_pred CCCCHHHHHHHHcCChHHHHHHHHHHHhhh-hcccCCc----------ccccc-ccccccccccCCCCCCCCChHHHHHH
Q 039483 23 PQIDPNLFKVAAAGNLEPFKDMAREVIESL-LTARSRT----------QSCIS-TSNCRRQKMCQPVTAKGDTRSRHVAA 90 (360)
Q Consensus 23 ~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~-~~~~~~t----------~~~v~-l~~~~~~~~~~~~~~~g~tp~Lh~A~ 90 (360)
..+.||||.||+.|+.++++.|++.+.+.. .+..+.+ ..++. +... +.++ +.+|..|.|| ||+|+
T Consensus 57 ~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~d~~g~t~-l~~A~ 133 (337)
T 4g8k_A 57 EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSK-GADV-NECDFYGFTA-FMEAA 133 (337)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCT-TCBCTTCCBH-HHHHH
T ss_pred CCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhc-cchh-hhhccCCCCH-HHHHH
Confidence 347899999999999999999999543221 1222222 23333 5566 7888 9999999999 99999
Q ss_pred hcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHh-hCCCC
Q 039483 91 KFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILK-SCTSV 169 (360)
Q Consensus 91 ~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~-~g~~~ 169 (360)
..|+.+++++|+++|++++..+... ......+..|. ||||+|+..|+ .+++++|++ .|+++
T Consensus 134 ~~~~~~~~~~ll~~ga~~~~~~~~~--------~~~~~~~~~g~---------T~L~~A~~~g~-~~~v~~LL~~~gad~ 195 (337)
T 4g8k_A 134 VYGKVKALKFLYKRGANVNLRRKTK--------EDQERLRKGGA---------TALMDAAEKGH-VEVLKILLDEMGADV 195 (337)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCCCC-------------CTTCSC---------CHHHHHHHHTC-HHHHHHHHHHSCCCT
T ss_pred HcCcHHHHHHHHHcCCCcchhhccc--------cccccccCCCC---------cHHHHHHHCCC-HHHHHHHHhccCCCc
Confidence 9999999999999999987633221 11223455564 88888999999 999999996 59999
Q ss_pred CccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHh-cCCc
Q 039483 170 SHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILK-IDRT 248 (360)
Q Consensus 170 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~-~g~~ 248 (360)
+. +|..|.|++|+++..+.. .....++++|++++ ++++.+|..|+||||+|+..|+.+++++|++ .|++
T Consensus 196 n~---~d~~g~t~l~~~~~~~~~------~~~~~i~~lLl~~g-ad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~ 265 (337)
T 4g8k_A 196 NA---CDNMGRNALIHALLSSDD------SDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE 265 (337)
T ss_dssp TC---CCTTSCCHHHHHHHHSCT------TTHHHHHHHHHHTT-CCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC
T ss_pred Cc---cCCCCCcHHHHHHHHcCc------ccHHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc
Confidence 99 999999999988766543 01126889999998 8899999999999999999999999999996 4889
Q ss_pred cccccccCCCCchhhhhhcCCccc-cccccc--ccCccCCCCCCcHHHHHHHcCCHHHHHHHhhhh
Q 039483 249 AAKIADKDRKMTALHLVHGPKGCQ-NNMLAS--SLMDEGDAKGNTTVHFFAAVHRKEIFDDLSGRV 311 (360)
Q Consensus 249 ~~~~~d~~~g~tpLh~A~~~~~~~-~~~L~~--~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~~~~ 311 (360)
+ +.+|. .|+||||+|+..++.+ +++|+. ++++ +.||||+|++.|+.++++.|+++.
T Consensus 266 v-n~~d~-~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n-----~~~~L~~A~~~~~~~iv~~Ll~~G 324 (337)
T 4g8k_A 266 I-NDTDS-DGKTALLLAVELKLKKIAELLCKRGASTD-----CGDLVMTARRNYDHSLVKVLLSHG 324 (337)
T ss_dssp T-TCBCT-TSCBHHHHHHHTTCHHHHHHHHTTSCSST-----TCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred c-cCcCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCC-----CCCHHHHHHHcCCHHHHHHHHHCc
Confidence 9 99999 9999999999999999 999985 6555 456999999999999999999874
No 24
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=9.7e-33 Score=243.34 Aligned_cols=195 Identities=21% Similarity=0.260 Sum_probs=183.5
Q ss_pred CCCCCCCCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCC
Q 039483 75 QPVTAKGDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEH 154 (360)
Q Consensus 75 ~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~ 154 (360)
+.+|..|.|| ||+||..|+.+++++|+++|++++. .+..|. ||||.|+..|+
T Consensus 5 ~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~------------------~~~~g~---------t~L~~A~~~~~ 56 (237)
T 3b7b_A 5 KMEHQNKRSP-LHAAAEAGHVDICHMLVQAGANIDT------------------CSEDQR---------TPLMEAAENNH 56 (237)
T ss_dssp CCSSCCSCCH-HHHHHHHTCHHHHHHHHHTTCCTTC------------------CCTTCC---------CHHHHHHHTTC
T ss_pred ccccCCCCCH-HHHHHHcCcHHHHHHHHHcCCCcCc------------------cCCCCC---------CHHHHHHHhCC
Confidence 7788999999 9999999999999999999999987 777775 88888899999
Q ss_pred cHHHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcC
Q 039483 155 SSHTVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHR 234 (360)
Q Consensus 155 ~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~ 234 (360)
.+++++|++.|++++. ++..|.||||+|+..|+. +++++|++.++.+++..+..|+||||+|+..+
T Consensus 57 -~~~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~----------~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 122 (237)
T 3b7b_A 57 -LEAVKYLIKAGALVDP---KDAEGSTCLHLAAKKGHY----------EVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK 122 (237)
T ss_dssp -HHHHHHHHTTTCCCCC---CCTTSCCHHHHHHHTTCH----------HHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTT
T ss_pred -HHHHHHHHhCCCCCCC---CCCCCCcHHHHHHHcCCH----------HHHHHHHhCCCCCcccCCCCCCCHHHHHHHcC
Confidence 9999999999999999 999999999999999999 99999999987889999999999999999999
Q ss_pred CHHHHHHHHhcCCccccccccCCCCchhhhhhcCCccc-cccccc--ccCccCCCCCCcHHHHHHHcCCHHHHHHHhhhh
Q 039483 235 NYLILKLILKIDRTAAKIADKDRKMTALHLVHGPKGCQ-NNMLAS--SLMDEGDAKGNTTVHFFAAVHRKEIFDDLSGRV 311 (360)
Q Consensus 235 ~~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~-~~~L~~--~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~~~~ 311 (360)
+.+++++|++.|+++ +.++. .|.||||+|+..++.+ +++|+. ++++.+|..|+||||+|++.++.++++.|.++.
T Consensus 123 ~~~~~~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 200 (237)
T 3b7b_A 123 HVDLVKLLLSKGSDI-NIRDN-EENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD 200 (237)
T ss_dssp CHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred CHHHHHHHHHCCCCC-CccCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcC
Confidence 999999999999999 99999 9999999999999988 888884 899999999999999999999999999999875
Q ss_pred cc
Q 039483 312 KA 313 (360)
Q Consensus 312 ~~ 313 (360)
..
T Consensus 201 ad 202 (237)
T 3b7b_A 201 SD 202 (237)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 25
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=4.1e-33 Score=245.06 Aligned_cols=190 Identities=17% Similarity=0.181 Sum_probs=171.7
Q ss_pred CCCChHHHHHHhcCCHHHHHHHHHh-ccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHH
Q 039483 80 KGDTRSRHVAAKFDHCDIVSVLIER-AKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHT 158 (360)
Q Consensus 80 ~g~tp~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~ 158 (360)
.|+|| ||+|+..|+.+++++|++. |++++. +|..|. ||||+|+..|+ .++
T Consensus 2 ~g~t~-L~~A~~~g~~~~v~~Ll~~~g~~~~~------------------~~~~g~---------t~L~~A~~~g~-~~~ 52 (232)
T 2rfa_A 2 IWESP-LLLAAKENDVQALSKLLKFEGCEVHQ------------------RGAMGE---------TALHIAALYDN-LEA 52 (232)
T ss_dssp CTTCH-HHHHHHTTCHHHHHHHHTTTCSCTTC------------------CCTTSC---------CHHHHHHHTTC-HHH
T ss_pred CCCCH-HHHHHHcCCHHHHHHHHHhcCCCccc------------------CCCCCC---------CHHHHHHHcCC-HHH
Confidence 48999 9999999999999999998 999888 788885 88888899999 999
Q ss_pred HHHHHhhCCCC-----CccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccC------------
Q 039483 159 VVAILKSCTSV-----SHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQ------------ 221 (360)
Q Consensus 159 ~~~Ll~~g~~~-----~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~------------ 221 (360)
+++|++.|+++ +. +|..|.||||+|+..|+. +++++|++.+ .+++..+.
T Consensus 53 v~~Ll~~~~~~~~~~~~~---~~~~g~t~L~~A~~~~~~----------~~v~~Ll~~g-~~~~~~~~~~~~~~~~~~~~ 118 (232)
T 2rfa_A 53 AMVLMEAAPELVFEPMTS---ELYEGQTALHIAVINQNV----------NLVRALLARG-ASVSARATGSVFHYRPHNLI 118 (232)
T ss_dssp HHHHHHHCGGGGGCCCCS---TTTTTCCHHHHHHHTTCH----------HHHHHHHHTT-CCTTCCCCSGGGSCCTTCSC
T ss_pred HHHHHHcCchhccccccc---cCCCCcCHHHHHHHcCCH----------HHHHHHHhCC-CCCCcccCCcceeecccccc
Confidence 99999999876 44 778999999999999999 9999999998 77777654
Q ss_pred -CCChHHHHHHHcCCHHHHHHHHhcCCccccccccCCCCchhhhhhcCCccc-c----ccccc--ccC------ccCCCC
Q 039483 222 -CWWTPIHYAAYHRNYLILKLILKIDRTAAKIADKDRKMTALHLVHGPKGCQ-N----NMLAS--SLM------DEGDAK 287 (360)
Q Consensus 222 -~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~-~----~~L~~--~~~------~~~d~~ 287 (360)
.|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..++.+ + ++|+. ++. +.+|..
T Consensus 119 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~-~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~ 196 (232)
T 2rfa_A 119 YYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDS-LGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQ 196 (232)
T ss_dssp CCCSSHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTT
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCC-CCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCC
Confidence 7999999999999999999999999999 99999 9999999999999888 5 77774 444 588999
Q ss_pred CCcHHHHHHHcCCHHHHHHHhhhhccc
Q 039483 288 GNTTVHFFAAVHRKEIFDDLSGRVKAT 314 (360)
Q Consensus 288 g~Tpl~~A~~~~~~~i~~~l~~~~~~~ 314 (360)
|+||||+|++.|+.++++.|+++....
T Consensus 197 g~tpl~~A~~~g~~~~v~~Ll~~g~~~ 223 (232)
T 2rfa_A 197 GLTPFKLAGVEGNIVMFQHLMQKRKHI 223 (232)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 999999999999999999999986443
No 26
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-32 Score=248.62 Aligned_cols=205 Identities=19% Similarity=0.121 Sum_probs=182.6
Q ss_pred CCCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHH
Q 039483 22 QPQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVL 101 (360)
Q Consensus 22 ~~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~L 101 (360)
...+.+|||.|++.|+.++++.|++. +..+ +.+|..|.|| ||+|+..|+.+++++|
T Consensus 36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~----------------------g~~~-~~~~~~g~t~-L~~A~~~~~~~~v~~L 91 (285)
T 1wdy_A 36 EEGGWTPLHNAVQMSREDIVELLLRH----------------------GADP-VLRKKNGATP-FLLAAIAGSVKLLKLF 91 (285)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHT----------------------TCCT-TCCCTTCCCH-HHHHHHHTCHHHHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHc----------------------CCCC-cccCCCCCCH-HHHHHHcCCHHHHHHH
Confidence 45577999999999999999999984 5555 6777788888 8888888888888888
Q ss_pred HHhccccCcccccccccchhhHHHhhcccCCCCchHHHhh-h---------------------------------cCHHH
Q 039483 102 IERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAY-N---------------------------------KIPLC 147 (360)
Q Consensus 102 l~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~-~---------------------------------~t~L~ 147 (360)
+++|++++. .|..|.||||+|+ + .||||
T Consensus 92 l~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~ 153 (285)
T 1wdy_A 92 LSKGADVNE------------------CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 153 (285)
T ss_dssp HHTTCCTTC------------------BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHH
T ss_pred HHcCCCCCc------------------cCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHH
Confidence 888888776 6777777777777 2 38999
Q ss_pred HHHhcCCcHHHHHHHHhh-CCCCCccccCCCCCCcHHHHHHhcCC----cccccccCChHHHHHHHHhcCccccccccCC
Q 039483 148 MAAEYEHSSHTVVAILKS-CTSVSHIYMKAPMERQALHAATMHID----LCKFNHTLSNDCAVQQLFEGKKSMIKGIDQC 222 (360)
Q Consensus 148 ~A~~~g~~~~~~~~Ll~~-g~~~~~~~~~d~~g~t~Lh~A~~~~~----~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~ 222 (360)
.|+..|+ .+++++|++. |.+++. ++..|.||||+|+..++ . +++++|++.+ .+++.+|..
T Consensus 154 ~A~~~~~-~~~v~~Ll~~~~~~~~~---~~~~g~t~l~~a~~~~~~~~~~----------~i~~~Ll~~g-~~~~~~~~~ 218 (285)
T 1wdy_A 154 DAAEKGH-VEVLKILLDEMGADVNA---CDNMGRNALIHALLSSDDSDVE----------AITHLLLDHG-ADVNVRGER 218 (285)
T ss_dssp HHHHHTC-HHHHHHHHHTSCCCTTC---CCTTSCCHHHHHHHCSCTTTHH----------HHHHHHHHTT-CCSSCCCTT
T ss_pred HHHHcCC-HHHHHHHHHhcCCCCCc---cCCCCCCHHHHHHHccccchHH----------HHHHHHHHcC-CCCCCcCCC
Confidence 9999999 9999999998 999999 99999999999999999 7 9999999999 889999999
Q ss_pred CChHHHHHHHcCCHHHHHHHHh-cCCccccccccCCCCchhhhhhcCCccc-cccccc--ccCccCC
Q 039483 223 WWTPIHYAAYHRNYLILKLILK-IDRTAAKIADKDRKMTALHLVHGPKGCQ-NNMLAS--SLMDEGD 285 (360)
Q Consensus 223 g~t~Lh~A~~~~~~~~v~~Ll~-~g~~~~~~~d~~~g~tpLh~A~~~~~~~-~~~L~~--~~~~~~d 285 (360)
|+||||+|+..|+.+++++|++ .|+++ +.+|. .|+||||+|+..++.+ +++|+. ++++.+|
T Consensus 219 g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~~~-~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 219 GKTPLILAVEKKHLGLVQRLLEQEHIEI-NDTDS-DGKTALLLAVELKLKKIAELLCKRGASTDCGD 283 (285)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHSSSCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred CCcHHHHHHHcCCHHHHHHHHhccCCCc-cccCC-CCCcHHHHHHHcCcHHHHHHHHHcCCCCCccc
Confidence 9999999999999999999998 89999 99999 9999999999999999 899984 8887776
No 27
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=8.9e-34 Score=253.19 Aligned_cols=197 Identities=18% Similarity=0.143 Sum_probs=150.1
Q ss_pred cccCCCCCCCCChHHHHHHhcC-------------CHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHH
Q 039483 72 KMCQPVTAKGDTRSRHVAAKFD-------------HCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLH 138 (360)
Q Consensus 72 ~~~~~~~~~g~tp~Lh~A~~~g-------------~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh 138 (360)
++ +.+|.+|.|| ||+|+..| +.+++++|+++|++++. ..|..|.
T Consensus 2 dv-n~~d~~g~tp-L~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~-----------------~~d~~g~---- 58 (253)
T 1yyh_A 2 DV-NVRGPDGFTP-LMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHN-----------------QTDRTGE---- 58 (253)
T ss_dssp ---------------------------------------------------------------------CCCTTSC----
T ss_pred CC-CCCCCCCCcH-HHHHHhccccccccchhhcCCChHHHHHHHHccCCccc-----------------ccCCCCC----
Confidence 35 7789999999 99999988 89999999999998865 2577775
Q ss_pred HhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCcccccc
Q 039483 139 EAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKG 218 (360)
Q Consensus 139 ~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~ 218 (360)
||||+|+..|+ .+++++|+++|++++. ++..|.||||+|+..|+. +++++|++.+..+++.
T Consensus 59 -----t~L~~A~~~g~-~~~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~----------~~v~~Ll~~~~~~~~~ 119 (253)
T 1yyh_A 59 -----TALHLAARYSR-SDAAKRLLEASADANI---QDNMGRTPLHAAVSADAQ----------GVFQILIRNRATDLDA 119 (253)
T ss_dssp -----CHHHHHHHTTC-HHHHHHHHHTTCCTTC---CCTTSCCHHHHHHHHTCH----------HHHHHHHHSTTSCTTC
T ss_pred -----cHHHHHHHcCC-HHHHHHHHHcCCCCCC---CCCCCCCHHHHHHHcCCH----------HHHHHHHHcCCCCccc
Confidence 88888899999 9999999999999999 999999999999999999 9999999998668999
Q ss_pred ccCCCChHHHHHHHcCCHHHHHHHHhcCCccccccccCCCCchhhhhhcCCccc-cccccc--ccCccCCCCCCcHHHHH
Q 039483 219 IDQCWWTPIHYAAYHRNYLILKLILKIDRTAAKIADKDRKMTALHLVHGPKGCQ-NNMLAS--SLMDEGDAKGNTTVHFF 295 (360)
Q Consensus 219 ~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~-~~~L~~--~~~~~~d~~g~Tpl~~A 295 (360)
.+..|+||||+|+..|+.+++++|++.|+++ +.++. .|+||||+|+..++.+ +++|+. ++++.+|..|+||||+|
T Consensus 120 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A 197 (253)
T 1yyh_A 120 RMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDD-LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLA 197 (253)
T ss_dssp CCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCBCT-TSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence 9999999999999999999999999999999 99999 9999999999999998 888884 89999999999999999
Q ss_pred HHcCCHHHHHHHhhhhc
Q 039483 296 AAVHRKEIFDDLSGRVK 312 (360)
Q Consensus 296 ~~~~~~~i~~~l~~~~~ 312 (360)
++.|+.++++.|+++..
T Consensus 198 ~~~~~~~~v~~Ll~~ga 214 (253)
T 1yyh_A 198 AREGSYETAKVLLDHFA 214 (253)
T ss_dssp HHHTCHHHHHHHHHTTC
T ss_pred HHCCCHHHHHHHHHcCC
Confidence 99999999999998853
No 28
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.6e-32 Score=240.83 Aligned_cols=193 Identities=16% Similarity=0.125 Sum_probs=175.8
Q ss_pred CCCCCCCCChHHHHHHhcCCHHHHHHHHH----hccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHH
Q 039483 75 QPVTAKGDTRSRHVAAKFDHCDIVSVLIE----RAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAA 150 (360)
Q Consensus 75 ~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~ 150 (360)
+.+|.+|.|| ||+||..|+.+++++|++ .|.+++. .|..|. ||||+|+
T Consensus 3 ~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~------------------~~~~g~---------t~L~~A~ 54 (241)
T 1k1a_A 3 TRADEDGDTP-LHIAVVQGNLPAVHRLVNLFQQGGRELDI------------------YNNLRQ---------TPLHLAV 54 (241)
T ss_dssp ----CTTCCH-HHHHHHTTCHHHHHHHHHHHHHTTCCSCC------------------CCTTSC---------CHHHHHH
T ss_pred cccCCCCCcH-HHHHHHcCCHHHHHHHHHHHHhcCCCCCc------------------ccccCC---------CHHHHHH
Confidence 6789999999 999999999999999997 6788877 777875 8888889
Q ss_pred hcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCc---cccccccCCCChHH
Q 039483 151 EYEHSSHTVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKK---SMIKGIDQCWWTPI 227 (360)
Q Consensus 151 ~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~---~~i~~~d~~g~t~L 227 (360)
..|+ .+++++|++.|++++. ++..|.||||+|+..++. +++++|++.+. .+++..+..|+|||
T Consensus 55 ~~~~-~~~v~~Ll~~g~~~~~---~~~~g~t~l~~A~~~~~~----------~~~~~Ll~~~~~~~~~~~~~~~~g~t~L 120 (241)
T 1k1a_A 55 ITTL-PSVVRLLVTAGASPMA---LDRHGQTAAHLACEHRSP----------TCLRALLDSAAPGTLDLEARNYDGLTAL 120 (241)
T ss_dssp HTTC-HHHHHHHHHTTCCTTC---CCTTSCCHHHHHHHTTCH----------HHHHHHHHHSCTTSCCTTCCCTTSCCHH
T ss_pred HcCC-HHHHHHHHHcCCCccc---cCCCCCCHHHHHHHcCCH----------HHHHHHHHcCCCccccccccCcCCCcHH
Confidence 9999 9999999999999999 999999999999999999 99999999983 26788899999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCccccccc-cCCCCchhhhhhcCCccc-cccccc--ccCccCCCCCCcHHHHHHHcCCHHH
Q 039483 228 HYAAYHRNYLILKLILKIDRTAAKIAD-KDRKMTALHLVHGPKGCQ-NNMLAS--SLMDEGDAKGNTTVHFFAAVHRKEI 303 (360)
Q Consensus 228 h~A~~~~~~~~v~~Ll~~g~~~~~~~d-~~~g~tpLh~A~~~~~~~-~~~L~~--~~~~~~d~~g~Tpl~~A~~~~~~~i 303 (360)
|+|+..|+.+++++|++.|+++ +..+ . .|.||||+|+..++.+ +++|+. ++++.+|..|+||||+|++.|+.++
T Consensus 121 ~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 198 (241)
T 1k1a_A 121 HVAVNTECQETVQLLLERGADI-DAVDIK-SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPL 198 (241)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCT-TCCCTT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCc-cccccc-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence 9999999999999999999999 8888 6 8999999999999998 888884 8999999999999999999999999
Q ss_pred HHHHhhhh
Q 039483 304 FDDLSGRV 311 (360)
Q Consensus 304 ~~~l~~~~ 311 (360)
++.|+++.
T Consensus 199 v~~Ll~~g 206 (241)
T 1k1a_A 199 VRTLVRSG 206 (241)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcC
Confidence 99999875
No 29
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.8e-33 Score=265.65 Aligned_cols=195 Identities=20% Similarity=0.186 Sum_probs=177.2
Q ss_pred cccCCCC-CCCCChHHHHHHhcCCHHHHHHHH--------HhccccCcccccccccchhhHHHhhcccCCCCchHHHhhh
Q 039483 72 KMCQPVT-AKGDTRSRHVAAKFDHCDIVSVLI--------ERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYN 142 (360)
Q Consensus 72 ~~~~~~~-~~g~tp~Lh~A~~~g~~~~v~~Ll--------~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~ 142 (360)
.+ +..| ..|.|| ||+||..|+.+++++|+ +.|++++. +|..|.
T Consensus 116 ~~-n~~d~~~g~t~-Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~------------------~d~~g~-------- 167 (373)
T 2fo1_E 116 SV-NIIDPRHNRTV-LHWIASNSSAEKSEDLIVHEAKECIAAGADVNA------------------MDCDEN-------- 167 (373)
T ss_dssp TT-TTCCCSSCCCH-HHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTC------------------CCTTSC--------
T ss_pred cc-cccCCcCCCCH-HHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcC------------------CCCCCC--------
Confidence 45 6677 689999 99999999998877776 78999888 788885
Q ss_pred cCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCc--ccccccc
Q 039483 143 KIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKK--SMIKGID 220 (360)
Q Consensus 143 ~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~--~~i~~~d 220 (360)
||||+|+..|+ .+++++|+++|++++. ++..|.||||+|+..|+. +++++|++.+. .+++..|
T Consensus 168 -TpL~~A~~~g~-~~iv~~Ll~~ga~~~~---~~~~g~t~L~~A~~~g~~----------~~v~~Ll~~~~~~~~~~~~d 232 (373)
T 2fo1_E 168 -TPLMLAVLARR-RRLVAYLMKAGADPTI---YNKSERSALHQAAANRDF----------GMMVYMLNSTKLKGDIEELD 232 (373)
T ss_dssp -CHHHHHHHHTC-HHHHHHHHHTTCCSCC---CCTTCCCHHHHHHHTTCH----------HHHHHHTTSHHHHHTTSCCC
T ss_pred -CHHHHHHHcCh-HHHHHHHHHCCCCCcc---cCCCCCCHHHHHHHCCCH----------HHHHHHHhcCccccChhhcC
Confidence 88888899999 9999999999999999 999999999999999999 99999998863 5788899
Q ss_pred CCCChHHHHHHHcC---CHHHHHHHHhcCCccccc--------cccCCCCchhhhhhcCCccc-ccccc---cccCccCC
Q 039483 221 QCWWTPIHYAAYHR---NYLILKLILKIDRTAAKI--------ADKDRKMTALHLVHGPKGCQ-NNMLA---SSLMDEGD 285 (360)
Q Consensus 221 ~~g~t~Lh~A~~~~---~~~~v~~Ll~~g~~~~~~--------~d~~~g~tpLh~A~~~~~~~-~~~L~---~~~~~~~d 285 (360)
..|+||||+|+..+ +.+++++|++.|+++ +. .+. .|.||||+|+..++.+ +++|+ +++++.+|
T Consensus 233 ~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~d~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d 310 (373)
T 2fo1_E 233 RNGMTALMIVAHNEGRDQVASAKLLVEKGAKV-DYDGAARKDSEKY-KGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQD 310 (373)
T ss_dssp TTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCS-SCCSGGGTSSSSC-CCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCC
T ss_pred CCCCCHHHHHHHhCCcchHHHHHHHHHCCCCc-ccccccccCcccc-cCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcC
Confidence 99999999999998 899999999999998 65 566 8999999999999999 88988 38999999
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhhhh
Q 039483 286 AKGNTTVHFFAAVHRKEIFDDLSGRV 311 (360)
Q Consensus 286 ~~g~Tpl~~A~~~~~~~i~~~l~~~~ 311 (360)
..|+||||+|++.|+.++++.|+++.
T Consensus 311 ~~g~TpL~~A~~~g~~~iv~~Ll~~g 336 (373)
T 2fo1_E 311 EDGKTPIMLAAQEGRIEVVMYLIQQG 336 (373)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 99999999999999999999999874
No 30
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=6.9e-33 Score=252.04 Aligned_cols=216 Identities=13% Similarity=0.086 Sum_probs=180.2
Q ss_pred CCCCCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHH
Q 039483 20 TSQPQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVS 99 (360)
Q Consensus 20 ~~~~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~ 99 (360)
.....+.+|||.||..|+.++++.|++. +.++ +.. +|.|| ||+|+..|+.++++
T Consensus 26 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----------------------g~~~-~~~--~g~t~-L~~A~~~g~~~~v~ 79 (285)
T 3kea_A 26 KADVHGHSASYYAIADNNVRLVCTLLNA----------------------GALK-NLL--ENEFP-LHQAATLEDTKIVK 79 (285)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHT----------------------TGGG-SCC--TTCCH-HHHHTTSSSCHHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHhC----------------------CCCC-CCC--CCCCH-HHHHHHcCCHHHHH
Confidence 3346677899999999999999999884 3344 444 48899 99999999999999
Q ss_pred HHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCC
Q 039483 100 VLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPME 179 (360)
Q Consensus 100 ~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g 179 (360)
+|+++|++++. +|..|. ||||+|+..|+ .+++++|+++|++++. ++..|
T Consensus 80 ~Ll~~ga~~~~------------------~d~~g~---------t~L~~A~~~g~-~~~v~~Ll~~ga~~~~---~~~~g 128 (285)
T 3kea_A 80 ILLFSGLDDSQ------------------FDDKGN---------TALYYAVDSGN-MQTVKLFVKKNWRLMF---YGKTG 128 (285)
T ss_dssp HHHHTTCCTTC------------------CCTTSC---------CHHHHHHHTTC-HHHHHHHHHHCGGGGG---CSSSG
T ss_pred HHHHCCCCCCC------------------cCCCCC---------cHHHHHHHcCC-HHHHHHHHhcCCCCCc---cCCCC
Confidence 99999998887 777775 77788888899 9999999999999988 88888
Q ss_pred -CcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccC-CCChHHHHHHHcCCHHHHHHHHhcCCccccccccCC
Q 039483 180 -RQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQ-CWWTPIHYAAYHRNYLILKLILKIDRTAAKIADKDR 257 (360)
Q Consensus 180 -~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~-~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~ 257 (360)
.||||+|+..|+. +++++|++.++. . .+. .|+||||+|+..|+.+++++|+++|+++ +.++. .
T Consensus 129 ~~t~L~~A~~~~~~----------~~v~~Ll~~g~~-~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-n~~~~-~ 193 (285)
T 3kea_A 129 WKTSFYHAVMLNDV----------SIVSYFLSEIPS-T--FDLAILLSCIHITIKNGHVDMMILLLDYMTST-NTNNS-L 193 (285)
T ss_dssp GGSHHHHHHHTTCH----------HHHHHHHTTSCT-T--CCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHT-CTTCC-C
T ss_pred CCCHHHHHHHcCCH----------HHHHHHHhCCCc-c--ccccCCccHHHHHHHcChHHHHHHHHHcCCCC-CcccC-C
Confidence 7999999999999 999999998833 2 333 8889999999999999999999999998 99998 9
Q ss_pred CCch-hhhhhcCCccc-cccccc--ccCccCCCCCCcHHHHHHHcCCHHHHHHHhhhhccc
Q 039483 258 KMTA-LHLVHGPKGCQ-NNMLAS--SLMDEGDAKGNTTVHFFAAVHRKEIFDDLSGRVKAT 314 (360)
Q Consensus 258 g~tp-Lh~A~~~~~~~-~~~L~~--~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~~~~~~~ 314 (360)
|+|| ||+|+..++.+ +++|+. ++++.+|. .|+..|+.++++.|+++...+
T Consensus 194 g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~ 247 (285)
T 3kea_A 194 LFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVEY 247 (285)
T ss_dssp BCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCC
Confidence 9997 99999988888 888884 77777773 557788999999998875443
No 31
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=2e-33 Score=247.98 Aligned_cols=212 Identities=16% Similarity=0.109 Sum_probs=177.5
Q ss_pred CCCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHH
Q 039483 22 QPQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVL 101 (360)
Q Consensus 22 ~~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~L 101 (360)
...+.+|||.|+..|+.++++.|++..... +.++ +.+|..|.|| ||+|+..|+.+++++|
T Consensus 5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~------------------~~~~-~~~~~~g~t~-L~~A~~~~~~~~v~~L 64 (236)
T 1ikn_D 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGD------------------LAFL-NFQNNLQQTP-LHLAVITNQPEIAEAL 64 (236)
T ss_dssp --CCCCTTHHHHHTTCSSSSSCCCC-----------------------CCCC-CCCCTTCCCH-HHHHHHTTCHHHHHCC
T ss_pred CCCCCchhHHHHHcCChhHHHHHHHHhhcc------------------HHHh-hccCCCCCCH-HHHHHHcCCHHHHHHH
Confidence 345678999999999999999998843332 5577 8899999999 9999999999999999
Q ss_pred HHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCC------CccccC
Q 039483 102 IERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSV------SHIYMK 175 (360)
Q Consensus 102 l~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~------~~~~~~ 175 (360)
+++|++++. .|..|. ||||+|+..|+ .+++++|++.|.++ +. .
T Consensus 65 l~~g~~~~~------------------~~~~g~---------t~L~~A~~~~~-~~~v~~Ll~~~~~~~~~~~~~~---~ 113 (236)
T 1ikn_D 65 LGAGCDPEL------------------RDFRGN---------TPLHLACEQGC-LASVGVLTQSCTTPHLHSILKA---T 113 (236)
T ss_dssp CSCCCCSCC------------------CCTTCC---------CHHHHHHHHTC-HHHHHHHHHSTTTTSSSCGGGC---C
T ss_pred HHcCCCCCC------------------cCCCCC---------CHHHHHHHcCC-HHHHHHHHhcccchhHHHHhhc---c
Confidence 999999887 777775 77788888999 99999999998753 44 7
Q ss_pred CCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccC-CCChHHHHHHHcCCHHHHHHHHhcCCccccccc
Q 039483 176 APMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQ-CWWTPIHYAAYHRNYLILKLILKIDRTAAKIAD 254 (360)
Q Consensus 176 d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~-~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d 254 (360)
+..|.||||+|+..|+. +++++|++.+ .+++..+. .|+||||+|+..|+.+++++|+++|+++ +.++
T Consensus 114 ~~~g~t~L~~A~~~~~~----------~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~ 181 (236)
T 1ikn_D 114 NYNGHTCLHLASIHGYL----------GIVELLVSLG-ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-NRVT 181 (236)
T ss_dssp CTTCCCHHHHHHHTTCH----------HHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS-CCCC
T ss_pred CCCCCCHHHHHHHcCCH----------HHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-Cccc
Confidence 78899999999999999 9999999998 78888887 9999999999999999999999999999 9999
Q ss_pred cCCCCchhhhhhcCCccc-cccccc--cc--CccCCCCCCcHHHHHHH
Q 039483 255 KDRKMTALHLVHGPKGCQ-NNMLAS--SL--MDEGDAKGNTTVHFFAA 297 (360)
Q Consensus 255 ~~~g~tpLh~A~~~~~~~-~~~L~~--~~--~~~~d~~g~Tpl~~A~~ 297 (360)
. .|+||||+|+..++.+ +++|+. ++ ....+..|.||.+.+..
T Consensus 182 ~-~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 228 (236)
T 1ikn_D 182 Y-QGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESE 228 (236)
T ss_dssp T-TCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC--
T ss_pred C-CCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhcc
Confidence 8 9999999999988888 888874 43 34778888888776543
No 32
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.5e-32 Score=249.80 Aligned_cols=191 Identities=14% Similarity=0.048 Sum_probs=176.5
Q ss_pred cccCCCCCCCCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHh
Q 039483 72 KMCQPVTAKGDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAE 151 (360)
Q Consensus 72 ~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~ 151 (360)
.+ +.+|..|.|| ||+|+..|+.+++++|+++|++++. .| |. ||||+|+.
T Consensus 23 ~~-~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~------------------~~--g~---------t~L~~A~~ 71 (285)
T 3kea_A 23 DT-FKADVHGHSA-SYYAIADNNVRLVCTLLNAGALKNL------------------LE--NE---------FPLHQAAT 71 (285)
T ss_dssp TT-TCCCTTSCCH-HHHHHHTTCHHHHHHHHHTTGGGSC------------------CT--TC---------CHHHHHTT
T ss_pred CC-CccCCCCCCH-HHHHHHcCCHHHHHHHHhCCCCCCC------------------CC--CC---------CHHHHHHH
Confidence 46 8899999999 9999999999999999999999887 43 53 88888899
Q ss_pred cCCcHHHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCC-ChHHHHH
Q 039483 152 YEHSSHTVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCW-WTPIHYA 230 (360)
Q Consensus 152 ~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g-~t~Lh~A 230 (360)
.|+ .+++++|+++|++++. +|..|.||||+|+..|+. +++++|++.+ .+++..+..| .||||+|
T Consensus 72 ~g~-~~~v~~Ll~~ga~~~~---~d~~g~t~L~~A~~~g~~----------~~v~~Ll~~g-a~~~~~~~~g~~t~L~~A 136 (285)
T 3kea_A 72 LED-TKIVKILLFSGLDDSQ---FDDKGNTALYYAVDSGNM----------QTVKLFVKKN-WRLMFYGKTGWKTSFYHA 136 (285)
T ss_dssp SSS-CHHHHHHHHTTCCTTC---CCTTSCCHHHHHHHTTCH----------HHHHHHHHHC-GGGGGCSSSGGGSHHHHH
T ss_pred cCC-HHHHHHHHHCCCCCCC---cCCCCCcHHHHHHHcCCH----------HHHHHHHhcC-CCCCccCCCCCCCHHHHH
Confidence 999 9999999999999999 999999999999999999 9999999998 8899999999 7999999
Q ss_pred HHcCCHHHHHHHHhcCCccccccccCCCCchhhhhhcCCccc-cccccc--ccCccCCCCCCcH-HHHHHHcCCHHHHHH
Q 039483 231 AYHRNYLILKLILKIDRTAAKIADKDRKMTALHLVHGPKGCQ-NNMLAS--SLMDEGDAKGNTT-VHFFAAVHRKEIFDD 306 (360)
Q Consensus 231 ~~~~~~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~-~~~L~~--~~~~~~d~~g~Tp-l~~A~~~~~~~i~~~ 306 (360)
+..|+.+++++|+++|++. ... . .|.||||+|+..++.+ +++|+. ++++.+|..|+|| ||+|++.++.++++.
T Consensus 137 ~~~~~~~~v~~Ll~~g~~~-~~~-~-~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~ 213 (285)
T 3kea_A 137 VMLNDVSIVSYFLSEIPST-FDL-A-ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQA 213 (285)
T ss_dssp HHTTCHHHHHHHHTTSCTT-CCC-S-THHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHH
T ss_pred HHcCCHHHHHHHHhCCCcc-ccc-c-CCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHH
Confidence 9999999999999999877 333 3 7899999999999999 899984 9999999999998 999999999999999
Q ss_pred Hhhhh
Q 039483 307 LSGRV 311 (360)
Q Consensus 307 l~~~~ 311 (360)
|++..
T Consensus 214 Ll~~g 218 (285)
T 3kea_A 214 LFKYD 218 (285)
T ss_dssp HTTSC
T ss_pred HHHcC
Confidence 99874
No 33
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=3.8e-32 Score=233.46 Aligned_cols=189 Identities=14% Similarity=0.081 Sum_probs=173.5
Q ss_pred CCCCCChHHHHHHhcCCHHHHHHHHHhcc-ccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcH
Q 039483 78 TAKGDTRSRHVAAKFDHCDIVSVLIERAK-LVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSS 156 (360)
Q Consensus 78 ~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~ 156 (360)
+..+.|| ||.|+..|+.++++.|+..+. +++. .|..|. ||||+|+..|+ .
T Consensus 2 ~~~~~~~-L~~A~~~g~~~~v~~ll~~~~~~~~~------------------~~~~g~---------t~L~~A~~~~~-~ 52 (201)
T 3hra_A 2 KTYEVGA-LLEAANQRDTKKVKEILQDTTYQVDE------------------VDTEGN---------TPLNIAVHNND-I 52 (201)
T ss_dssp -CCCTTH-HHHHHHTTCHHHHHHHHTCTTCCTTC------------------CCTTSC---------CHHHHHHHHTC-H
T ss_pred CcccccH-HHHHHHhccHHHHHHHHHcCCCCCCC------------------CCCCCC---------CHHHHHHHcCC-H
Confidence 3568899 999999999999999998876 7776 777875 88888899999 9
Q ss_pred HHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCH
Q 039483 157 HTVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNY 236 (360)
Q Consensus 157 ~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~ 236 (360)
+++++|+++|++++. ++..|.||||+|+..|+. +++++|++.+..+++..+..|.||||+|+..|+.
T Consensus 53 ~~v~~Ll~~g~~~~~---~~~~g~t~l~~A~~~~~~----------~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~ 119 (201)
T 3hra_A 53 EIAKALIDRGADINL---QNSISDSPYLYAGAQGRT----------EILAYMLKHATPDLNKHNRYGGNALIPAAEKGHI 119 (201)
T ss_dssp HHHHHHHHTTCCTTC---CCTTSCCHHHHHHHTTCH----------HHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCH
T ss_pred HHHHHHHHcCCCCCC---CCCCCCCHHHHHHHcCCH----------HHHHHHHhccCcccccccCCCCcHHHHHHHcCCH
Confidence 999999999999999 999999999999999999 9999999777688999999999999999999999
Q ss_pred HHHHHHHhcC-CccccccccCCCCchhhhhhcCCc-----cc-ccccc--cccCccCCCCCCcHHHHHHHcCCHHHHHHH
Q 039483 237 LILKLILKID-RTAAKIADKDRKMTALHLVHGPKG-----CQ-NNMLA--SSLMDEGDAKGNTTVHFFAAVHRKEIFDDL 307 (360)
Q Consensus 237 ~~v~~Ll~~g-~~~~~~~d~~~g~tpLh~A~~~~~-----~~-~~~L~--~~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l 307 (360)
+++++|+++| +++ +.++. .|+||||+|+..+. .+ +++|+ +++++.+|..|+||||+|++.|+.++++.|
T Consensus 120 ~~v~~Ll~~g~~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L 197 (201)
T 3hra_A 120 DNVKLLLEDGREDI-DFQND-FGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197 (201)
T ss_dssp HHHHHHHHHCCCCT-TCCCT-TSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHcCCCCc-CCCCC-CCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHH
Confidence 9999999999 888 99999 99999999998887 45 88887 499999999999999999999999999998
Q ss_pred hhh
Q 039483 308 SGR 310 (360)
Q Consensus 308 ~~~ 310 (360)
.++
T Consensus 198 l~~ 200 (201)
T 3hra_A 198 AQY 200 (201)
T ss_dssp HTC
T ss_pred Hhc
Confidence 764
No 34
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=6e-32 Score=242.49 Aligned_cols=185 Identities=17% Similarity=0.072 Sum_probs=170.2
Q ss_pred CCCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHH
Q 039483 80 KGDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTV 159 (360)
Q Consensus 80 ~g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~ 159 (360)
+|.|| ||+||..|+.+++++|+++|++++. .|..|. ||||+|+..|+ .+++
T Consensus 2 ~g~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~------------------~~~~g~---------t~L~~A~~~g~-~~~v 52 (261)
T 2xai_A 2 SDWSP-MHEAAIHGHQLSLRNLISQGWAVNI------------------ITADHV---------SPLHEACLGGH-LSCV 52 (261)
T ss_dssp --CCH-HHHHHHHTCHHHHHHHHHTTCCSSC------------------CCTTCC---------CHHHHHHHHTC-HHHH
T ss_pred CCCCH-HHHHHHcCCHHHHHHHHHCCCCCCC------------------cCCCCC---------CHHHHHHHcCC-HHHH
Confidence 58999 9999999999999999999999988 788885 78888899999 9999
Q ss_pred HHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHH
Q 039483 160 VAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLIL 239 (360)
Q Consensus 160 ~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v 239 (360)
++|+++|++++. +|..|.||||+|+..|+. +++++|++.+ .+++. +..|.||||+|+..|+.+++
T Consensus 53 ~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~----------~~v~~Ll~~g-~~~~~-~~~g~t~L~~A~~~~~~~~v 117 (261)
T 2xai_A 53 KILLKHGAQVNG---VTADWHTPLFNACVSGSW----------DCVNLLLQHG-ASVQP-ESDLASPIHEAARRGHVECV 117 (261)
T ss_dssp HHHHHTTCCTTC---CCTTSCCHHHHHHHHTCH----------HHHHHHHHTT-CCSSC-SCTTCCHHHHHHHTTCHHHH
T ss_pred HHHHHCCCCCCC---CCCCCCCHHHHHHHcCCH----------HHHHHHHHCC-CCCCC-CCCCCCHHHHHHHcCcHHHH
Confidence 999999999999 999999999999999999 9999999998 65654 45699999999999999999
Q ss_pred HHHHhcCCccccccccCCCCchhhhhhcCCccc-cccccc--ccCccCCCCCCcHHHHHHHcCCHHHHHHHhhhh
Q 039483 240 KLILKIDRTAAKIADKDRKMTALHLVHGPKGCQ-NNMLAS--SLMDEGDAKGNTTVHFFAAVHRKEIFDDLSGRV 311 (360)
Q Consensus 240 ~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~-~~~L~~--~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~~~~ 311 (360)
++|+++|+++ +.++. .|+||||+|+..++.+ +++|+. ++++. +..|+||||+|++.++.++++.|+++.
T Consensus 118 ~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~g 189 (261)
T 2xai_A 118 NSLIAYGGNI-DHKIS-HLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFG 189 (261)
T ss_dssp HHHHHTTCCT-TCCBT-TTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHcCCCC-CcCCC-CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcC
Confidence 9999999999 99999 9999999999999999 888884 77774 889999999999999999999999874
No 35
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.98 E-value=2e-31 Score=223.57 Aligned_cols=157 Identities=25% Similarity=0.290 Sum_probs=145.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHHHHhcc
Q 039483 27 PNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLIERAK 106 (360)
Q Consensus 27 ~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g~ 106 (360)
.+|+.||+.|+.++|+.|++. +.++ +.+|..|.|| ||+|+..|+.+++++|+++|+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~----------------------Gadv-n~~d~~g~t~-l~~a~~~~~~~~~~~ll~~ga 61 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIEN----------------------GADV-NASDSDGRTP-LHHAAENGHKEVVKLLISKGA 61 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT----------------------TCCT-TCCCTTSCCH-HHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHC----------------------CCCC-CCcCCCCCCH-HHHHHHcCCHHHHHHHHhccc
Confidence 469999999999999999984 7788 9999999999 999999999999999999999
Q ss_pred ccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHHHH
Q 039483 107 LVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQALHAA 186 (360)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A 186 (360)
+++. +|..|. ||||+|+..|+ .+++++|+++|++++. +|..|+||||+|
T Consensus 62 d~~~------------------~d~~g~---------TpLh~A~~~g~-~~~v~~Ll~~gadvn~---~d~~G~TpLh~A 110 (169)
T 4gpm_A 62 DVNA------------------KDSDGR---------TPLHHAAENGH-KEVVKLLISKGADVNA---KDSDGRTPLHHA 110 (169)
T ss_dssp CTTC------------------CCTTSC---------CHHHHHHHTTC-HHHHHHHHHTTCCTTC---CCTTSCCHHHHH
T ss_pred chhh------------------hccCCC---------CHHHHHHHcCC-HHHHHHHHHCcCCCCC---CCCCCCCHHHHH
Confidence 9988 788885 78888899999 9999999999999999 999999999999
Q ss_pred HhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCcc
Q 039483 187 TMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKIDRTA 249 (360)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~ 249 (360)
+..|+. +++++|++.+ ++++.+|..|+||||+|+.+|+.+++++|+++|+++
T Consensus 111 ~~~g~~----------~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i 162 (169)
T 4gpm_A 111 AENGHK----------EVVKLLISKG-ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL 162 (169)
T ss_dssp HHTTCH----------HHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred HHcCCH----------HHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence 999999 9999999999 889999999999999999999999999999999998
No 36
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.98 E-value=2.6e-31 Score=231.95 Aligned_cols=189 Identities=17% Similarity=0.145 Sum_probs=175.4
Q ss_pred CCCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHH
Q 039483 22 QPQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVL 101 (360)
Q Consensus 22 ~~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~L 101 (360)
...+.+|||.||..|+.++++.|++. +.++ +.+|..|.|| ||+|+..|+.+++++|
T Consensus 22 d~~g~t~L~~A~~~g~~~~v~~Ll~~----------------------g~~~-~~~~~~g~t~-L~~A~~~~~~~~v~~L 77 (223)
T 2f8y_A 22 DRTGETALHLAARYSRSDAAKRLLEA----------------------SADA-NIQDNMGRTP-LHAAVSADAQGVFQIL 77 (223)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHT----------------------TCCT-TCCCTTSCCH-HHHHHHTTCHHHHHHH
T ss_pred CCCCCchHHHHHHcCCHHHHHHHHHc----------------------CCCC-CCcCCCCCCH-HHHHHHcCCHHHHHHH
Confidence 45678999999999999999999984 5666 8889999999 9999999999999999
Q ss_pred HHhcc-ccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCC
Q 039483 102 IERAK-LVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMER 180 (360)
Q Consensus 102 l~~g~-~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~ 180 (360)
+++++ +++. .+..|. ||||+|+..|+ .+++++|+++|++++. ++..|.
T Consensus 78 l~~~~~~~~~------------------~~~~g~---------t~L~~A~~~~~-~~~~~~Ll~~g~~~~~---~~~~g~ 126 (223)
T 2f8y_A 78 IRNRATDLDA------------------RMHDGT---------TPLILAARLAV-EGMLEDLINSHADVNA---VDDLGK 126 (223)
T ss_dssp HHBTTSCTTC------------------CCTTCC---------CHHHHHHHHTC-HHHHHHHHHTTCCTTC---BCTTSC
T ss_pred HHcCCCCccc------------------CCCCCC---------cHHHHHHHhCc-HHHHHHHHHcCCCCcC---cCCCCC
Confidence 99987 6665 677775 78888899999 9999999999999999 999999
Q ss_pred cHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCccccccccCCCCc
Q 039483 181 QALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKIDRTAAKIADKDRKMT 260 (360)
Q Consensus 181 t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~g~t 260 (360)
||||+|+..|+. +++++|++.+ .+++..|..|+||||+|+..|+.+++++|+++|+++ +.++. .|.|
T Consensus 127 t~L~~A~~~~~~----------~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~-~g~t 193 (223)
T 2f8y_A 127 SALHWAAAVNNV----------DAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR-DITDH-MDRL 193 (223)
T ss_dssp BHHHHHHHTTCH----------HHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TCCC
T ss_pred cHHHHHHHcCCH----------HHHHHHHHcC-CCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-ccccc-cCCC
Confidence 999999999999 9999999998 889999999999999999999999999999999999 99999 9999
Q ss_pred hhhhhhcCCccc-cccccc
Q 039483 261 ALHLVHGPKGCQ-NNMLAS 278 (360)
Q Consensus 261 pLh~A~~~~~~~-~~~L~~ 278 (360)
|+|+|+..++.+ +++|++
T Consensus 194 ~l~~A~~~~~~~i~~~L~~ 212 (223)
T 2f8y_A 194 PRDIAQERMHHDIVRLLDE 212 (223)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHH
Confidence 999999999988 888875
No 37
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.98 E-value=1.6e-31 Score=229.48 Aligned_cols=190 Identities=18% Similarity=0.209 Sum_probs=172.8
Q ss_pred CCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHHH
Q 039483 23 PQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLI 102 (360)
Q Consensus 23 ~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll 102 (360)
.+..++||.||..|+.+.++.|+... +.++ +.+|..|.|| ||+|+..|+.+++++|+
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~---------------------~~~~-~~~~~~g~t~-L~~A~~~~~~~~v~~Ll 59 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDT---------------------TYQV-DEVDTEGNTP-LNIAVHNNDIEIAKALI 59 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCT---------------------TCCT-TCCCTTSCCH-HHHHHHHTCHHHHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcC---------------------CCCC-CCCCCCCCCH-HHHHHHcCCHHHHHHHH
Confidence 34568899999999999999998731 4467 8899999999 99999999999999999
Q ss_pred HhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHH-hhCCCCCccccCCCCCCc
Q 039483 103 ERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAIL-KSCTSVSHIYMKAPMERQ 181 (360)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll-~~g~~~~~~~~~d~~g~t 181 (360)
++|++++. .|..|. ||||+|+..|+ .+++++|+ ..+.+++. ++..|.|
T Consensus 60 ~~g~~~~~------------------~~~~g~---------t~l~~A~~~~~-~~~~~~Ll~~~~~~~~~---~~~~g~t 108 (201)
T 3hra_A 60 DRGADINL------------------QNSISD---------SPYLYAGAQGR-TEILAYMLKHATPDLNK---HNRYGGN 108 (201)
T ss_dssp HTTCCTTC------------------CCTTSC---------CHHHHHHHTTC-HHHHHHHHHHSCCCTTC---CCTTSCC
T ss_pred HcCCCCCC------------------CCCCCC---------CHHHHHHHcCC-HHHHHHHHhccCccccc---ccCCCCc
Confidence 99999988 777775 78888899999 99999999 55668888 9999999
Q ss_pred HHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCC-----HHHHHHHHhcCCccccccccC
Q 039483 182 ALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRN-----YLILKLILKIDRTAAKIADKD 256 (360)
Q Consensus 182 ~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~-----~~~v~~Ll~~g~~~~~~~d~~ 256 (360)
|||+|+..|+. +++++|++.++.+++..|..|+||||+|+..++ .+++++|+++|+++ +.+|.
T Consensus 109 ~L~~A~~~~~~----------~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~-~~~~~- 176 (201)
T 3hra_A 109 ALIPAAEKGHI----------DNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ-SIKDN- 176 (201)
T ss_dssp SHHHHHHTTCH----------HHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCT-TCCCT-
T ss_pred HHHHHHHcCCH----------HHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCC-CccCC-
Confidence 99999999999 999999999978899999999999999999998 99999999999999 99999
Q ss_pred CCCchhhhhhcCCccc-cccccc
Q 039483 257 RKMTALHLVHGPKGCQ-NNMLAS 278 (360)
Q Consensus 257 ~g~tpLh~A~~~~~~~-~~~L~~ 278 (360)
.|+||||+|+..++.+ +++|++
T Consensus 177 ~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 177 SGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHhHHHHHHh
Confidence 9999999999999888 777653
No 38
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.98 E-value=1.6e-31 Score=234.81 Aligned_cols=193 Identities=21% Similarity=0.194 Sum_probs=170.3
Q ss_pred CCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHHHHh
Q 039483 25 IDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLIER 104 (360)
Q Consensus 25 ~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~ 104 (360)
+.+|||.||+.|+.+.++.|++. . +.++ +.+|..|.|| ||+|+..|+.+++++|+++
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~----~-----------------g~~~-~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKF----E-----------------GCEV-HQRGAMGETA-LHIAALYDNLEAAMVLMEA 59 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTT----T-----------------CSCT-TCCCTTSCCH-HHHHHHTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHh----c-----------------CCCc-ccCCCCCCCH-HHHHHHcCCHHHHHHHHHc
Confidence 56899999999999999999883 1 6677 8899999999 9999999999999999999
Q ss_pred ccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCC-------
Q 039483 105 AKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAP------- 177 (360)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~------- 177 (360)
|+++...+ .+..|..|. ||||+|+..|+ .+++++|+++|++++. ++.
T Consensus 60 ~~~~~~~~-------------~~~~~~~g~---------t~L~~A~~~~~-~~~v~~Ll~~g~~~~~---~~~~~~~~~~ 113 (232)
T 2rfa_A 60 APELVFEP-------------MTSELYEGQ---------TALHIAVINQN-VNLVRALLARGASVSA---RATGSVFHYR 113 (232)
T ss_dssp CGGGGGCC-------------CCSTTTTTC---------CHHHHHHHTTC-HHHHHHHHHTTCCTTC---CCCSGGGSCC
T ss_pred Cchhcccc-------------ccccCCCCc---------CHHHHHHHcCC-HHHHHHHHhCCCCCCc---ccCCcceeec
Confidence 98863210 112566774 88888899999 9999999999999988 655
Q ss_pred ------CCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHH----HHHHhcCC
Q 039483 178 ------MERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLIL----KLILKIDR 247 (360)
Q Consensus 178 ------~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v----~~Ll~~g~ 247 (360)
.|.||||+|+..|+. +++++|++++ .+++.+|..|+||||+|+..++.+++ ++|++.|+
T Consensus 114 ~~~~~~~g~t~L~~A~~~~~~----------~~v~~Ll~~g-a~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 114 PHNLIYYGEHPLSFAACVGSE----------EIVRLLIEHG-ADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp TTCSCCCCSSHHHHHHHHTCH----------HHHHHHHHTT-CCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred ccccccCCCCHHHHHHHcCCH----------HHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 799999999999999 9999999998 88999999999999999999999988 99999999
Q ss_pred ccc-----cccccCCCCchhhhhhcCCccc-cccccc
Q 039483 248 TAA-----KIADKDRKMTALHLVHGPKGCQ-NNMLAS 278 (360)
Q Consensus 248 ~~~-----~~~d~~~g~tpLh~A~~~~~~~-~~~L~~ 278 (360)
+.. +.+|. .|+||||+|+..++.+ +++|++
T Consensus 183 ~~~~~~~~~~~~~-~g~tpl~~A~~~g~~~~v~~Ll~ 218 (232)
T 2rfa_A 183 GDHLKSLELVPNN-QGLTPFKLAGVEGNIVMFQHLMQ 218 (232)
T ss_dssp SCSSCCGGGCCCT-TSCCHHHHHHHHTCHHHHHHHHH
T ss_pred chhhhhhhccCCC-CCCCHHHHHHHcCCHHHHHHHHh
Confidence 772 47888 9999999999999999 888885
No 39
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.98 E-value=5.4e-32 Score=244.12 Aligned_cols=181 Identities=18% Similarity=0.230 Sum_probs=147.5
Q ss_pred CCCCCHHHHHHHHcCChH-HHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHH
Q 039483 22 QPQIDPNLFKVAAAGNLE-PFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSV 100 (360)
Q Consensus 22 ~~~~~~~L~~Aa~~G~~~-~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~ 100 (360)
...+.+||+.|+..|+.+ +++.|++. +.++ +.+|.+|.|| ||+||..|+.++|++
T Consensus 49 ~~~~~t~L~~a~~~~~~~~~v~~Ll~~----------------------Gadv-n~~d~~G~Tp-Lh~A~~~g~~~~v~~ 104 (269)
T 4b93_B 49 DPEFCHPLCQCPKCAPAQKRLAKVPAS----------------------GLGV-NVTSQDGSSP-LHVAALHGRADLIPL 104 (269)
T ss_dssp --------------------------C----------------------CCCT-TCCCTTSCCH-HHHHHHTTCTTHHHH
T ss_pred CccCCCHHHHHHHhCCHHHHHHHHHHC----------------------CCCC-CCcCCCCCCH-HHHHHHcCcHHHHHH
Confidence 345678999999988765 55666552 7788 9999999999 999999999999999
Q ss_pred HHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCC
Q 039483 101 LIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMER 180 (360)
Q Consensus 101 Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~ 180 (360)
|++.|++++. .+..|. ||++.|+..++ .+++++|++.|++++. +|..|.
T Consensus 105 Ll~~~a~~~~------------------~~~~g~---------t~l~~a~~~~~-~~~~~~Ll~~g~~~n~---~d~~g~ 153 (269)
T 4b93_B 105 LLKHGANAGA------------------RNADQA---------VPLHLACQQGH-FQVVKCLLDSNAKPNK---KDLSGN 153 (269)
T ss_dssp HHHTTCCTTC------------------CCTTCC---------CHHHHHHHHTC-HHHHHHHHHTTCCSCC---CCTTCC
T ss_pred HHhcCCCcCc------------------cCCCCC---------CccccccccCh-HHHHHHHHHCCCCCCC---CCCCCC
Confidence 9999999988 777875 78888889999 9999999999999999 999999
Q ss_pred cHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCccccccccCCCCc
Q 039483 181 QALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKIDRTAAKIADKDRKMT 260 (360)
Q Consensus 181 t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~g~t 260 (360)
||||+|+..|+. +++++|++.+ ++++..+..|+||||+|+..|+.+++++|+++|+++ +.+|. .|+|
T Consensus 154 TpL~~A~~~g~~----------~~v~~Ll~~g-advn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~-~~~d~-~G~T 220 (269)
T 4b93_B 154 TPLIYACSGGHH----------ELVALLLQHG-ASINASNNKGNTALHEAVIEKHVFVVELLLLHGASV-QVLNK-RQRT 220 (269)
T ss_dssp CHHHHHHHTTCG----------GGHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCS-CCCCT-TSCC
T ss_pred CHHHHHHHCCCH----------HHHHHHHHCC-CCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCC-CCcCC-CCCC
Confidence 999999999999 9999999999 889999999999999999999999999999999999 99999 9999
Q ss_pred hhhhhhcCCc
Q 039483 261 ALHLVHGPKG 270 (360)
Q Consensus 261 pLh~A~~~~~ 270 (360)
|||+|+.++.
T Consensus 221 pL~~A~~~~~ 230 (269)
T 4b93_B 221 AVDCAEQNSK 230 (269)
T ss_dssp SGGGSCTTCH
T ss_pred HHHHHHhCCc
Confidence 9999987765
No 40
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.98 E-value=8.5e-32 Score=240.44 Aligned_cols=214 Identities=16% Similarity=0.085 Sum_probs=171.8
Q ss_pred CCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCC----CCCCCCChHHHHHHhc---CCHH
Q 039483 24 QIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQP----VTAKGDTRSRHVAAKF---DHCD 96 (360)
Q Consensus 24 ~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~----~~~~g~tp~Lh~A~~~---g~~~ 96 (360)
++.+|||.||+.|+.+.++.+++.-+.. +.++ +. +|..|.|| ||+|+.. |+.+
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~------------------g~~i-~~~~~~~d~~g~t~-L~~A~~~~~~g~~~ 60 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWN------------------SKYL-TDSAYTEGSTGKTC-LMKAVLNLQDGVNA 60 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHH------------------TCCT-TSGGGSBTTTTBCH-HHHHHHTCBTTBCT
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHc------------------CCCc-ccccccCCCCCCCH-HHHHHHccccchHH
Confidence 4678999999999999777666632222 5666 66 89999999 9999999 9999
Q ss_pred HHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCC
Q 039483 97 IVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKA 176 (360)
Q Consensus 97 ~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d 176 (360)
++++|++.|++++..+.-.. ......|..|. ||||+|+..|+ .+++++|+++|++++. ++
T Consensus 61 ~v~~Ll~~g~~~~~~~~~~~-------~~~~~~d~~g~---------t~L~~A~~~g~-~~~v~~Ll~~ga~~~~---~~ 120 (256)
T 2etb_A 61 CIMPLLQIDKDSGNPKPLVN-------AQCTDEFYQGH---------SALHIAIEKRS-LQCVKLLVENGADVHL---RA 120 (256)
T ss_dssp THHHHHHHHHHTTCSSCGGG-------CCCCSTTTTTC---------CHHHHHHHTTC-HHHHHHHHHTTCCTTC---CC
T ss_pred HHHHHHhcCCcccchhhhcc-------cccccccccCC---------CHHHHHHHcCC-HHHHHHHHHcCCCCCc---cc
Confidence 99999999998764210000 00112345664 88888899999 9999999999999998 77
Q ss_pred CC-------------CCcHHHHHHhcCCcccccccCChHHHHHHHHh---cCccccccccCCCChHHHHHHH--cCCHH-
Q 039483 177 PM-------------ERQALHAATMHIDLCKFNHTLSNDCAVQQLFE---GKKSMIKGIDQCWWTPIHYAAY--HRNYL- 237 (360)
Q Consensus 177 ~~-------------g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~---~~~~~i~~~d~~g~t~Lh~A~~--~~~~~- 237 (360)
.. |.||||+|+..|+. +++++|++ .+ .+++.+|..|+||||+|+. .++.+
T Consensus 121 ~~~~~~~~~~~~~~~g~tpL~~A~~~~~~----------~~v~~Ll~~~~~g-a~~n~~d~~g~TpLh~A~~~~~~~~~~ 189 (256)
T 2etb_A 121 CGRFFQKHQGTCFYFGELPLSLAACTKQW----------DVVTYLLENPHQP-ASLEATDSLGNTVLHALVMIADNSPEN 189 (256)
T ss_dssp CSGGGSCCSSSCCCSCSSHHHHHHHTTCH----------HHHHHHHHCSSCC-CCTTCCCTTSCCHHHHHHHHCCSCHHH
T ss_pred ccccccccccccccCCCCHHHHHHHcCCH----------HHHHHHHhccccC-CCcCccCCCCCCHHHHHHHcccCCchh
Confidence 76 99999999999999 99999999 66 8888999999999999998 77887
Q ss_pred ------HHHHHHhcCCccccccccCCCCchhhhhhcCCcccccccccccCccCCCCCCcHHHHHHHcCCHHHHHHHhhhh
Q 039483 238 ------ILKLILKIDRTAAKIADKDRKMTALHLVHGPKGCQNNMLASSLMDEGDAKGNTTVHFFAAVHRKEIFDDLSGRV 311 (360)
Q Consensus 238 ------~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~~~~L~~~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~~~~ 311 (360)
++++|+++|+++ +.... ..+.+|..|+||||+|++.|+.++++.|+++.
T Consensus 190 ~~~~~~iv~~Ll~~ga~~-~~~~~------------------------~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g 244 (256)
T 2etb_A 190 SALVIHMYDGLLQMGARL-CPTVQ------------------------LEEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244 (256)
T ss_dssp HHHHHHHHHHHHHHHHHH-STTCC------------------------GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCc-ccccc------------------------cccccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence 999999988877 21111 13577889999999999999999999999875
Q ss_pred cc
Q 039483 312 KA 313 (360)
Q Consensus 312 ~~ 313 (360)
..
T Consensus 245 ~~ 246 (256)
T 2etb_A 245 FS 246 (256)
T ss_dssp HH
T ss_pred CC
Confidence 43
No 41
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.98 E-value=1.3e-31 Score=235.11 Aligned_cols=188 Identities=21% Similarity=0.200 Sum_probs=173.1
Q ss_pred CCCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHH
Q 039483 22 QPQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVL 101 (360)
Q Consensus 22 ~~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~L 101 (360)
...+.+|||.|+..|+.++++.|++. +..+ +.+|..|.|| ||+|+..|+.+++++|
T Consensus 37 ~~~g~t~L~~A~~~g~~~~v~~Ll~~----------------------g~~~-~~~~~~g~t~-L~~A~~~~~~~~v~~L 92 (231)
T 3aji_A 37 DQDSRTALHWACSAGHTEIVEFLLQL----------------------GVPV-NDKDDAGWSP-LHIAASAGXDEIVKAL 92 (231)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHT----------------------TCCS-CCCCTTSCCH-HHHHHHHTCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHHh----------------------CCCC-CCcCCCCCCH-HHHHHHcCHHHHHHHH
Confidence 45678999999999999999999984 5667 8889999999 9999999999999999
Q ss_pred HHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCc
Q 039483 102 IERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQ 181 (360)
Q Consensus 102 l~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t 181 (360)
+++|++++. .|..|. ||||+|+..|+ .+++++|+++|++++. ++..|.|
T Consensus 93 l~~g~~~~~------------------~~~~g~---------t~L~~A~~~~~-~~~~~~Ll~~g~~~~~---~~~~g~t 141 (231)
T 3aji_A 93 LVKGAHVNA------------------VNQNGC---------TPLHYAASKNR-HEIAVMLLEGGANPDA---KDHYDAT 141 (231)
T ss_dssp HHTTCCTTC------------------CCTTSC---------CHHHHHHHTTC-HHHHHHHHHTTCCTTC---CCTTSCC
T ss_pred HHcCCCCCC------------------CCCCCC---------CHHHHHHHcCC-HHHHHHHHHcCCCCCC---cCCCCCc
Confidence 999999887 777775 78888889999 9999999999999999 9999999
Q ss_pred HHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCccccccccCCCCch
Q 039483 182 ALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKIDRTAAKIADKDRKMTA 261 (360)
Q Consensus 182 ~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~g~tp 261 (360)
|||+|+..|+. +++++|++.+ .+++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||
T Consensus 142 ~L~~A~~~~~~----------~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~-~g~t~ 208 (231)
T 3aji_A 142 AMHRAAAKGNL----------KMVHILLFYK-ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI-YIENK-EEKTP 208 (231)
T ss_dssp HHHHHHHHTCH----------HHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCT-TSCCH
T ss_pred HHHHHHHcCCH----------HHHHHHHhcC-CCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCC-CCCCH
Confidence 99999999999 9999999998 889999999999999999999999999999999999 99999 99999
Q ss_pred hhhhhcCCccc-ccccc
Q 039483 262 LHLVHGPKGCQ-NNMLA 277 (360)
Q Consensus 262 Lh~A~~~~~~~-~~~L~ 277 (360)
+|+|+..++.+ .++|.
T Consensus 209 l~~A~~~~~~~i~~lL~ 225 (231)
T 3aji_A 209 LQVAKGGLGLILKRLAE 225 (231)
T ss_dssp HHHSCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHc
Confidence 99998776666 55554
No 42
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.97 E-value=9.2e-31 Score=229.12 Aligned_cols=191 Identities=16% Similarity=0.130 Sum_probs=170.9
Q ss_pred CCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHH
Q 039483 81 GDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVV 160 (360)
Q Consensus 81 g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~ 160 (360)
|.|| ||+||..|+.+++++|++.|.+... ..|..|. ||||+|+..|+ .++++
T Consensus 2 g~t~-L~~A~~~g~~~~v~~Ll~~~~~~~~-----------------~~~~~g~---------t~L~~A~~~~~-~~~v~ 53 (228)
T 2dzn_A 2 SNYP-LHQACMENEFFKVQELLHSKPSLLL-----------------QKDQDGR---------IPLHWSVSFQA-HEITS 53 (228)
T ss_dssp -CCH-HHHHHHTTCHHHHHHHHHHCGGGTT-----------------CCCTTSC---------CHHHHHHHTTC-HHHHH
T ss_pred CccH-HHHHHHhCCHHHHHHHHhcCccccc-----------------cCCCCCC---------CHHHHHHHcCC-HHHHH
Confidence 7899 9999999999999999999987654 3677775 88888899999 99999
Q ss_pred HHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcC-ccccccccCCCChHHHHHHHcCCHHHH
Q 039483 161 AILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGK-KSMIKGIDQCWWTPIHYAAYHRNYLIL 239 (360)
Q Consensus 161 ~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~-~~~i~~~d~~g~t~Lh~A~~~~~~~~v 239 (360)
+|++.|++++.....+..|.||||+|+..|+. +++++|++.+ ..+++..+..|+||||+|+..|+.+++
T Consensus 54 ~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~----------~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~ 123 (228)
T 2dzn_A 54 FLLSKMENVNLDDYPDDSGWTPFHIACSVGNL----------EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123 (228)
T ss_dssp HHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCH----------HHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred HHHhccccccccccCCCCCCCHHHHHHHcCCH----------HHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHH
Confidence 99999965554223677999999999999999 9999999986 466888899999999999999999999
Q ss_pred HHHHhcCCccccccccCCCCchhhhhhcCCccc-cccccc---ccCccCCCCCCcHHHHHHHcCCHHHHHHHh-hhh
Q 039483 240 KLILKIDRTAAKIADKDRKMTALHLVHGPKGCQ-NNMLAS---SLMDEGDAKGNTTVHFFAAVHRKEIFDDLS-GRV 311 (360)
Q Consensus 240 ~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~-~~~L~~---~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~-~~~ 311 (360)
++|+++|+++ +.++. .|+||||+|+..++.+ +++|+. ++++.+|..|+||||+|++.|+.++++.|+ +..
T Consensus 124 ~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~g 198 (228)
T 2dzn_A 124 QFLIENGASV-RIKDK-FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG 198 (228)
T ss_dssp HHHHHTTCCS-CCCCT-TSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHcCCCc-cccCC-CCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC
Confidence 9999999999 99999 9999999999999998 888883 789999999999999999999999999999 543
No 43
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=1e-32 Score=243.41 Aligned_cols=195 Identities=19% Similarity=0.191 Sum_probs=171.1
Q ss_pred CCCCCCCCChHHHHHHhcCCHHHHHHHHHhcc----ccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHH
Q 039483 75 QPVTAKGDTRSRHVAAKFDHCDIVSVLIERAK----LVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAA 150 (360)
Q Consensus 75 ~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g~----~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~ 150 (360)
+.+|.+|.|| ||+|+..|+.+++++|++.+. +++. .|..|. ||||+|+
T Consensus 2 ~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~------------------~~~~g~---------t~L~~A~ 53 (236)
T 1ikn_D 2 QQLTEDGDSF-LHLAIIHEEKALTMEVIRQVKGDLAFLNF------------------QNNLQQ---------TPLHLAV 53 (236)
T ss_dssp -----CCCCT-THHHHHTTCSSSSSCCCC-----CCCCCC------------------CCTTCC---------CHHHHHH
T ss_pred CcCCCCCCch-hHHHHHcCChhHHHHHHHHhhccHHHhhc------------------cCCCCC---------CHHHHHH
Confidence 5678999999 999999999999999998875 4555 777875 8888889
Q ss_pred hcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCc-----cccccccCCCCh
Q 039483 151 EYEHSSHTVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKK-----SMIKGIDQCWWT 225 (360)
Q Consensus 151 ~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~-----~~i~~~d~~g~t 225 (360)
..|+ .+++++|+++|++++. ++..|.||||+|+..|+. +++++|++.+. ..++..+..|+|
T Consensus 54 ~~~~-~~~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~----------~~v~~Ll~~~~~~~~~~~~~~~~~~g~t 119 (236)
T 1ikn_D 54 ITNQ-PEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCL----------ASVGVLTQSCTTPHLHSILKATNYNGHT 119 (236)
T ss_dssp HTTC-HHHHHCCCSCCCCSCC---CCTTCCCHHHHHHHHTCH----------HHHHHHHHSTTTTSSSCGGGCCCTTCCC
T ss_pred HcCC-HHHHHHHHHcCCCCCC---cCCCCCCHHHHHHHcCCH----------HHHHHHHhcccchhHHHHhhccCCCCCC
Confidence 9999 9999999999999999 999999999999999999 99999999872 225778889999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCccccccccCCCCchhhhhhcCCccc-cccccc--ccCccCCCCCCcHHHHHHHcCCHH
Q 039483 226 PIHYAAYHRNYLILKLILKIDRTAAKIADKDRKMTALHLVHGPKGCQ-NNMLAS--SLMDEGDAKGNTTVHFFAAVHRKE 302 (360)
Q Consensus 226 ~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~-~~~L~~--~~~~~~d~~g~Tpl~~A~~~~~~~ 302 (360)
|||+|+..|+.+++++|+++|+++ +.++...|+||||+|+..++.+ +++|+. ++++.+|..|+||||+|+..++.+
T Consensus 120 ~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~ 198 (236)
T 1ikn_D 120 CLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTR 198 (236)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchH
Confidence 999999999999999999999999 8887438999999999999999 888884 999999999999999999999999
Q ss_pred HHHHHhhhhc
Q 039483 303 IFDDLSGRVK 312 (360)
Q Consensus 303 i~~~l~~~~~ 312 (360)
+++.|+++..
T Consensus 199 ~~~~Ll~~ga 208 (236)
T 1ikn_D 199 IQQQLGQLTL 208 (236)
T ss_dssp HHHHHHTTSC
T ss_pred HHHHHHHcch
Confidence 9999998753
No 44
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=6.2e-32 Score=243.74 Aligned_cols=212 Identities=17% Similarity=0.158 Sum_probs=165.5
Q ss_pred CCCCCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccC----CCCCCCCChHHHHHHhc---
Q 039483 20 TSQPQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQ----PVTAKGDTRSRHVAAKF--- 92 (360)
Q Consensus 20 ~~~~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~----~~~~~g~tp~Lh~A~~~--- 92 (360)
.....+.++||.||+.|+.++++.|++...+. +..+ + ..|..|.|| ||+||..
T Consensus 8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~------------------~~~~-~~~~~~~~~~g~tp-L~~A~~~~~~ 67 (273)
T 2pnn_A 8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRS------------------KKRL-TDSEFKDPETGKTC-LLKAMLNLHN 67 (273)
T ss_dssp ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHS------------------CCCT-TSGGGSCTTTCCCH-HHHHHHSCBT
T ss_pred CCCcccchHHHHHHHcCCHHHHHHHHHHHhhc------------------cccc-CCcccccCcCCCCH-HHHHHHHHhc
Confidence 34566789999999999999999999854433 3333 2 468899999 9999987
Q ss_pred CCHHHHHHHHHhccccCcccccccccchhhHHHhhc----ccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCC
Q 039483 93 DHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRM----TNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTS 168 (360)
Q Consensus 93 g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~----~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~ 168 (360)
|+.+++++|++.|++.+. .+.+++. .|..|. ||||+|+..|+ .+++++|+++|++
T Consensus 68 g~~~~v~~Ll~~ga~~~~-----------~~~~i~~~~~~~d~~g~---------tpL~~A~~~g~-~~~v~~Ll~~ga~ 126 (273)
T 2pnn_A 68 GQNDTIALLLDVARKTDS-----------LKQFVNASYTDSYYKGQ---------TALHIAIERRN-MTLVTLLVENGAD 126 (273)
T ss_dssp TBCHHHHHHHHHHHHTTC-----------HHHHHTCCCCSTTTTTC---------CHHHHHHHTTC-HHHHHHHHHTTCC
T ss_pred CChHHHHHHHHhhccccc-----------hhHHhhcccccccCCCC---------CHHHHHHHcCC-HHHHHHHHHCCCC
Confidence 999999999999987543 1223332 456774 88888899999 9999999999999
Q ss_pred CCccccCCC--------------CCCcHHHHHHhcCCcccccccCChHHHHHHHHh---cCccccccccCCCChHHHHHH
Q 039483 169 VSHIYMKAP--------------MERQALHAATMHIDLCKFNHTLSNDCAVQQLFE---GKKSMIKGIDQCWWTPIHYAA 231 (360)
Q Consensus 169 ~~~~~~~d~--------------~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~---~~~~~i~~~d~~g~t~Lh~A~ 231 (360)
++. ++. .|.||||+|+..|+. +++++|++ .+ .+++.+|..|+||||+|+
T Consensus 127 ~~~---~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~----------~~v~~Ll~~~~~g-ad~~~~d~~g~tpLh~A~ 192 (273)
T 2pnn_A 127 VQA---AANGDFFKKTKGRPGFYFGELPLSLAACTNQL----------AIVKFLLQNSWQP-ADISARDSVGNTVLHALV 192 (273)
T ss_dssp TTC---CBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCH----------HHHHHHHHCSSCC-CCTTCCCTTSCCHHHHHH
T ss_pred cCc---cccccccccccccccccCCCCHHHHHHHcCCH----------HHHHHHHhcccCC-CCceeeCCCCCcHHHHHH
Confidence 998 776 688888888888888 88888888 66 778888888888888888
Q ss_pred HcCC---------HHHHHHHHhcCCccccccccCCCCchhhhhhcCCcccccccccccCccCCCCCCcHHHHHHHcCCHH
Q 039483 232 YHRN---------YLILKLILKIDRTAAKIADKDRKMTALHLVHGPKGCQNNMLASSLMDEGDAKGNTTVHFFAAVHRKE 302 (360)
Q Consensus 232 ~~~~---------~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~~~~L~~~~~~~~d~~g~Tpl~~A~~~~~~~ 302 (360)
..|+ .+++++|+++|+++ +.... .++.+|..|+||||+|++.|+.+
T Consensus 193 ~~~~~~~~~~~~~~~~v~~Ll~~ga~~-n~~~~------------------------~~~~~d~~g~TpL~~A~~~g~~~ 247 (273)
T 2pnn_A 193 EVADNTVDNTKFVTSMYNEILILGAKL-HPTLK------------------------LEEITNRKGLTPLALAASSGKIG 247 (273)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHHHHHHH-CTTCC------------------------GGGCCCTTSCCHHHHHHHTTCHH
T ss_pred HccCcchhHHHHHHHHHHHHHHhhhhc-ccccc------------------------cccccCCCCCCHHHHHHHhChHH
Confidence 8777 67888888888777 33211 12456788888888888888888
Q ss_pred HHHHHhhhh
Q 039483 303 IFDDLSGRV 311 (360)
Q Consensus 303 i~~~l~~~~ 311 (360)
+++.|+++.
T Consensus 248 iv~~Ll~~g 256 (273)
T 2pnn_A 248 VLAYILQRE 256 (273)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHCC
Confidence 888888864
No 45
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.97 E-value=1.1e-31 Score=252.05 Aligned_cols=236 Identities=12% Similarity=0.026 Sum_probs=191.0
Q ss_pred CCCCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHH
Q 039483 21 SQPQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSV 100 (360)
Q Consensus 21 ~~~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~ 100 (360)
....+.+|||.||..|+.++++.|++. +..+ .+..|.|| ||+|+..|+.+++++
T Consensus 49 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~----------------------g~~~---~~~~g~t~-L~~A~~~g~~~~v~~ 102 (364)
T 3ljn_A 49 QNRFGCTALHLACKFGCVDTAKYLASV----------------------GEVH---SLWHGQKP-IHLAVMANKTDLVVA 102 (364)
T ss_dssp CCTTCCCHHHHHHHHCCHHHHHHHHHH----------------------CCCC---CCBTTBCH-HHHHHHTTCHHHHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHC----------------------CCCc---cccCCCCH-HHHHHHcCCHHHHHH
Confidence 345678999999999999999999984 3333 23478999 999999999999999
Q ss_pred HHHh----ccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcC--CcHHHHHHHHhhCCCCCcccc
Q 039483 101 LIER----AKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYE--HSSHTVVAILKSCTSVSHIYM 174 (360)
Q Consensus 101 Ll~~----g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g--~~~~~~~~Ll~~g~~~~~~~~ 174 (360)
|++. |++++..-... .........++..|..|. ||||+|+..| + .+++++|+++|++++.
T Consensus 103 Ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~---------t~L~~A~~~g~~~-~~~v~~Ll~~ga~~~~--- 168 (364)
T 3ljn_A 103 LVEGAKERGQMPESLLNEC-DEREVNEIGSHVKHCKGQ---------TALHWCVGLGPEY-LEMIKILVQLGASPTA--- 168 (364)
T ss_dssp HHHHHHHHTCCHHHHHTCC-CCCCEEEETTEEEEESCC---------CHHHHHHHSCGGG-HHHHHHHHHHTCCTTC---
T ss_pred HHHhccccCCCHHHHHhhc-chHhhhhhccccCCCCCC---------CHHHHHHHcCCch-HHHHHHHHHcCCCCcc---
Confidence 9999 54433200000 000000111233566664 8888889999 8 9999999999999999
Q ss_pred CCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccc-----cccccCCCChHHHHHHHcCCHHHHHHHHhcCCcc
Q 039483 175 KAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSM-----IKGIDQCWWTPIHYAAYHRNYLILKLILKIDRTA 249 (360)
Q Consensus 175 ~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~-----i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~ 249 (360)
+|..|.||||+|+..|+. +++++|++.+ .+ ++..|..|+||||+|+..|+.+++++|+++|+++
T Consensus 169 ~d~~g~t~L~~A~~~g~~----------~~v~~Ll~~g-~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~ 237 (364)
T 3ljn_A 169 KDKADETPLMRAMEFRNR----------EALDLMMDTV-PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV 237 (364)
T ss_dssp CCTTSCCHHHHHHHTTCH----------HHHHHHHHHC-SCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCT
T ss_pred cCCCCCCHHHHHHHcCCH----------HHHHHHHhcc-cccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 999999999999999999 9999999988 55 8899999999999999999999999999999999
Q ss_pred ccccccCCCCchhhhhhcCCccc-cccccc--ccC------------ccCCCCCCcHHHHHHHcCCHHHHHHHhh
Q 039483 250 AKIADKDRKMTALHLVHGPKGCQ-NNMLAS--SLM------------DEGDAKGNTTVHFFAAVHRKEIFDDLSG 309 (360)
Q Consensus 250 ~~~~d~~~g~tpLh~A~~~~~~~-~~~L~~--~~~------------~~~d~~g~Tpl~~A~~~~~~~i~~~l~~ 309 (360)
+.+|. .|+||||+|+..++.+ +++|+. ++. ...+..|+||++.|+..++.+.+..|+.
T Consensus 238 -~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~ 310 (364)
T 3ljn_A 238 -NMEDN-EHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQ 310 (364)
T ss_dssp -TCCCT-TSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHH
T ss_pred -CCCCC-CCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHH
Confidence 99999 9999999999999999 888874 221 2256789999999999987666665544
No 46
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=9.8e-31 Score=233.97 Aligned_cols=214 Identities=17% Similarity=0.139 Sum_probs=166.8
Q ss_pred CCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCC----CCCCCCChHHHHHH---hcCCHH
Q 039483 24 QIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQP----VTAKGDTRSRHVAA---KFDHCD 96 (360)
Q Consensus 24 ~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~----~~~~g~tp~Lh~A~---~~g~~~ 96 (360)
+..++||.||+.|+.+.++.|++.-... +..+ +. .|..|.|| ||+|+ ..|+.+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~------------------~~~~-~~~~~~~~~~g~t~-L~~A~~~~~~g~~~ 63 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLSFLLTH------------------KKRL-TDEEFREPSTGKTC-LPKALLNLSAGRND 63 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHH------------------TCCT-TSGGGSCTTTCCCH-HHHHHTSCBTTBCT
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHhc------------------CCCc-chhhhhccCCCCcH-HHHHHHHhhcCCHH
Confidence 4568999999999999888887732222 3344 43 34779999 99999 779999
Q ss_pred HHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCC
Q 039483 97 IVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKA 176 (360)
Q Consensus 97 ~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d 176 (360)
++++|++.|++...... .....++..|..|. ||||+|+..|+ .+++++|+++|++++. ++
T Consensus 64 ~v~~Ll~~g~~~~~~~~-------~~~~~~~~~d~~g~---------t~L~~A~~~g~-~~~v~~Ll~~ga~~~~---~~ 123 (260)
T 3jxi_A 64 TIPILLDIAEKTGNMRE-------FINSPFRDVYYRGQ---------TALHIAIERRC-KHYVELLVEKGADVHA---QA 123 (260)
T ss_dssp HHHHHHHHHHHTTCHHH-------HHTCCBCCSSEESB---------CHHHHHHHTTC-HHHHHHHHHTTCCTTC---CC
T ss_pred HHHHHHHhcccccchHh-------hhcccccccccCCC---------CHHHHHHHcCC-HHHHHHHHhCCCCcCc---cc
Confidence 99999999977543100 00011222444664 88888999999 9999999999999998 77
Q ss_pred --------------CCCCcHHHHHHhcCCcccccccCChHHHHHHHHh---cCccccccccCCCChHHHHHHHcCC----
Q 039483 177 --------------PMERQALHAATMHIDLCKFNHTLSNDCAVQQLFE---GKKSMIKGIDQCWWTPIHYAAYHRN---- 235 (360)
Q Consensus 177 --------------~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~---~~~~~i~~~d~~g~t~Lh~A~~~~~---- 235 (360)
..|.||||+|+..|+. +++++|++ .+ .+++.+|..|+||||+|+..++
T Consensus 124 ~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~----------~~v~~Ll~~~~~g-a~~~~~d~~g~TpLh~A~~~~~~~~~ 192 (260)
T 3jxi_A 124 RGRFFQPKDEGGYFYFGELPLSLAACTNQP----------HIVHYLTENGHKQ-ADLRRQDSRGNTVLHALVAIADNTRE 192 (260)
T ss_dssp EECCCSSSCCCCSCCSCSSHHHHHHHTTCH----------HHHHHHHHCSSCC-CCTTCCCTTSCCHHHHHHHHCCSSHH
T ss_pred cccccCcccccccccCCCCHHHHHHHcCCH----------HHHHHHHhccccC-CCCcccCCCCCcHHHHHHHhccCchh
Confidence 5788899998888888 88888888 66 7788888888899998888777
Q ss_pred -----HHHHHHHHhcCCccccccccCCCCchhhhhhcCCcccccccccccCccCCCCCCcHHHHHHHcCCHHHHHHHhhh
Q 039483 236 -----YLILKLILKIDRTAAKIADKDRKMTALHLVHGPKGCQNNMLASSLMDEGDAKGNTTVHFFAAVHRKEIFDDLSGR 310 (360)
Q Consensus 236 -----~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~~~~L~~~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~~~ 310 (360)
.+++++|+++|+++ +.... ..+.+|..|+||||+|++.|+.++++.|+++
T Consensus 193 ~~~~~~~~v~~Ll~~ga~~-~~~~~------------------------~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 247 (260)
T 3jxi_A 193 NTKFVTKMYDLLLIKCAKL-FPDTN------------------------LEALLNNDGLSPLMMAAKTGKIGIFQHIIRR 247 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHH-CTTCC------------------------GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccc-ccccc------------------------hhhcccCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 68888888888877 32211 2356789999999999999999999999998
Q ss_pred hcc
Q 039483 311 VKA 313 (360)
Q Consensus 311 ~~~ 313 (360)
...
T Consensus 248 g~~ 250 (260)
T 3jxi_A 248 EIA 250 (260)
T ss_dssp HHH
T ss_pred CCC
Confidence 544
No 47
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.97 E-value=2.8e-31 Score=242.09 Aligned_cols=222 Identities=17% Similarity=0.073 Sum_probs=188.1
Q ss_pred HHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHHHHhccccCc
Q 039483 31 KVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLIERAKLVQH 110 (360)
Q Consensus 31 ~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~ 110 (360)
.+|.+|..+.++.++....... +. .. .... ...+..|.|| ||.||..|+.++|++|+++|++++.
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~--~~--------~~---~~~~-~~~~~~~~t~-l~~A~~~g~~~~v~~Ll~~g~~~~~ 68 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLE--PP--------VV---KRKK-TKVKFDDGAV-FLAACSSGDTEEVLRLLERGADINY 68 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSC--CS--------CC---CCSC-CCCEECHHHH-HHHHHHHTCHHHHHHHHHHCCCTTC
T ss_pred hHHHHHHHHHHHHHHccccccc--cc--------cc---cCcc-cccccCCccH-HHHHHHcCCHHHHHHHHHcCCCCcc
Confidence 5788888888888887422211 00 00 0111 2344567899 9999999999999999999999988
Q ss_pred ccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcC
Q 039483 111 EDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQALHAATMHI 190 (360)
Q Consensus 111 ~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~ 190 (360)
.|..|. ||||+|+..|+ .+++++|+++|++++. +|..|.||||+|+..|
T Consensus 69 ------------------~~~~g~---------t~L~~A~~~g~-~~~v~~Ll~~ga~~~~---~~~~g~tpL~~A~~~g 117 (299)
T 1s70_B 69 ------------------ANVDGL---------TALHQACIDDN-VDMVKFLVENGANINQ---PDNEGWIPLHAAASCG 117 (299)
T ss_dssp ------------------BCTTCC---------BHHHHHHHTTC-HHHHHHHHHTTCCTTC---CCTTSCCHHHHHHHHT
T ss_pred ------------------cCCCCC---------CHHHHHHHcCC-HHHHHHHHHCCCCCCC---CCCCCCcHHHHHHHcC
Confidence 788885 88888899999 9999999999999999 9999999999999999
Q ss_pred CcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHH-hcCCcccc------------------
Q 039483 191 DLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLIL-KIDRTAAK------------------ 251 (360)
Q Consensus 191 ~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll-~~g~~~~~------------------ 251 (360)
+. +++++|++.+ .+++..+..|.||||+|+..++.+++++++ ..+.++ +
T Consensus 118 ~~----------~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~-~~~~~~~~~~~~~~~~~~l 185 (299)
T 1s70_B 118 YL----------DIAEYLISQG-AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI-EAARKEEERIMLRDARQWL 185 (299)
T ss_dssp CH----------HHHHHHHHTT-CCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHHHHHH
T ss_pred CH----------HHHHHHHhCC-CCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCc-hhhhhhhhhHHHHHHHHHH
Confidence 99 9999999998 889999999999999999999999998877 445544 3
Q ss_pred --------ccccCCCCchhhhhhcCCccc-cccccc--ccCccCCCCCCcHHHHHHHcCCHHHHHHHhhhh
Q 039483 252 --------IADKDRKMTALHLVHGPKGCQ-NNMLAS--SLMDEGDAKGNTTVHFFAAVHRKEIFDDLSGRV 311 (360)
Q Consensus 252 --------~~d~~~g~tpLh~A~~~~~~~-~~~L~~--~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~~~~ 311 (360)
..+. .|.||||+|+..++.+ +++|+. ++++.+|..|+||||+|++.|+.++++.|++..
T Consensus 186 ~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g 255 (299)
T 1s70_B 186 NSGHINDVRHAK-SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255 (299)
T ss_dssp HHTCCCCCCCTT-TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred hccCcchhhhcC-CCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcC
Confidence 2455 8999999999999999 888884 899999999999999999999999999999875
No 48
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=1.9e-30 Score=217.52 Aligned_cols=151 Identities=25% Similarity=0.238 Sum_probs=132.4
Q ss_pred ChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHH
Q 039483 83 TRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAI 162 (360)
Q Consensus 83 tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~L 162 (360)
++ |+.||+.|+.++|++|+++|++++. +|..|. ||||+|+..++ .+++++|
T Consensus 6 ~~-L~~Aa~~G~~~~v~~Ll~~Gadvn~------------------~d~~g~---------t~l~~a~~~~~-~~~~~~l 56 (169)
T 4gpm_A 6 KR-LIEAAENGNKDRVKDLIENGADVNA------------------SDSDGR---------TPLHHAAENGH-KEVVKLL 56 (169)
T ss_dssp HH-HHHHHHTTCHHHHHHHHHTTCCTTC------------------CCTTSC---------CHHHHHHHTTC-HHHHHHH
T ss_pred HH-HHHHHHcCCHHHHHHHHHCCCCCCC------------------cCCCCC---------CHHHHHHHcCC-HHHHHHH
Confidence 35 8999999999999999999999988 788885 77778888888 9999999
Q ss_pred HhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHH
Q 039483 163 LKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLI 242 (360)
Q Consensus 163 l~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~L 242 (360)
++.|++++. +|..|+||||+|+..|+. +++++|++.+ .+++.+|..|+||||+|+..|+.+++++|
T Consensus 57 l~~gad~~~---~d~~g~TpLh~A~~~g~~----------~~v~~Ll~~g-advn~~d~~G~TpLh~A~~~g~~~~v~~L 122 (169)
T 4gpm_A 57 ISKGADVNA---KDSDGRTPLHHAAENGHK----------EVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLL 122 (169)
T ss_dssp HHTTCCTTC---CCTTSCCHHHHHHHTTCH----------HHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred Hhcccchhh---hccCCCCHHHHHHHcCCH----------HHHHHHHHCc-CCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 999999998 999999999999999999 9999999998 88899999999999999999999999999
Q ss_pred HhcCCccccccccCCCCchhhhhhcCCccc-cccccc
Q 039483 243 LKIDRTAAKIADKDRKMTALHLVHGPKGCQ-NNMLAS 278 (360)
Q Consensus 243 l~~g~~~~~~~d~~~g~tpLh~A~~~~~~~-~~~L~~ 278 (360)
+++|+++ +.+|. .|+||||+|+..++.+ +++|++
T Consensus 123 l~~gad~-~~~d~-~G~TpL~~A~~~g~~~iv~~Ll~ 157 (169)
T 4gpm_A 123 ISKGADV-NTSDS-DGRTPLDLAREHGNEEVVKLLEK 157 (169)
T ss_dssp HHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHT
T ss_pred HHcCCCc-cccCC-CCCCHHHHHHHcCCHHHHHHHHH
Confidence 9999998 88887 7777777777777766 666663
No 49
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.97 E-value=2e-29 Score=221.67 Aligned_cols=193 Identities=19% Similarity=0.148 Sum_probs=175.0
Q ss_pred CCCCCCCCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCC
Q 039483 75 QPVTAKGDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEH 154 (360)
Q Consensus 75 ~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~ 154 (360)
+..|..|.|| ||.|+..|+.+++++|++.|++++. .+..|. ||||+|+..|+
T Consensus 3 ~~~d~~~~~~-l~~A~~~g~~~~~~~Ll~~g~~~~~------------------~~~~g~---------t~L~~A~~~~~ 54 (240)
T 3eu9_A 3 THIDDYSTWD-IVKATQYGIYERCRELVEAGYDVRQ------------------PDKENV---------TLLHWAAINNR 54 (240)
T ss_dssp CCCSCGGGCC-HHHHHHTTCHHHHHHHHHTTCCTTC------------------CCTTSC---------CHHHHHHHTTC
T ss_pred cccccccchH-HHHHHHcCChHHHHHHHHcCCCcCC------------------CCCCCC---------CHHHHHHHhCC
Confidence 5678889999 9999999999999999999999887 777775 88888899999
Q ss_pred cHHHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcC
Q 039483 155 SSHTVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHR 234 (360)
Q Consensus 155 ~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~ 234 (360)
.+++++|++.|.+++. ..+..|.||||+|+..|+. +++++|++.+ .+++..+..|.||||+|+..|
T Consensus 55 -~~~v~~Ll~~~~~~~~--~~~~~~~t~L~~A~~~~~~----------~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~ 120 (240)
T 3eu9_A 55 -IDLVKYYISKGAIVDQ--LGGDLNSTPLHWATRQGHL----------SMVVQLMKYG-ADPSLIDGEGCSCIHLAAQFG 120 (240)
T ss_dssp -HHHHHHHHHTTCCTTC--CBTTTTBCHHHHHHHHTCH----------HHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTT
T ss_pred -HHHHHHHHHcCCcchh--hcCCcCCChhHHHHHcCCH----------HHHHHHHHcC-CCCcccCCCCCCHHHHHHHcC
Confidence 9999999999998876 1445699999999999999 9999999998 888999999999999999999
Q ss_pred CHHHHHHHHhcCCccccccccCCCCchhhhhhcCCcc-c-ccccc--cccCccCCC-CCCcHHHHHHHcCCHHHHHHHhh
Q 039483 235 NYLILKLILKIDRTAAKIADKDRKMTALHLVHGPKGC-Q-NNMLA--SSLMDEGDA-KGNTTVHFFAAVHRKEIFDDLSG 309 (360)
Q Consensus 235 ~~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~-~-~~~L~--~~~~~~~d~-~g~Tpl~~A~~~~~~~i~~~l~~ 309 (360)
+.+++++|+++|+++ +.++. .|.||||+|+..++. + +++|+ +++++..+. .|+||||+|++.|+.++++.|++
T Consensus 121 ~~~~~~~Ll~~~~~~-~~~~~-~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 198 (240)
T 3eu9_A 121 HTSIVAYLIAKGQDV-DMMDQ-NGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE 198 (240)
T ss_dssp CHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCc-cccCC-CCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999 99999 999999999976664 4 67776 488888887 89999999999999999999998
Q ss_pred hh
Q 039483 310 RV 311 (360)
Q Consensus 310 ~~ 311 (360)
+.
T Consensus 199 ~g 200 (240)
T 3eu9_A 199 AG 200 (240)
T ss_dssp HT
T ss_pred cC
Confidence 74
No 50
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=2.5e-30 Score=233.24 Aligned_cols=164 Identities=15% Similarity=0.093 Sum_probs=122.2
Q ss_pred ccccCCCCCCCCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHH
Q 039483 71 QKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAA 150 (360)
Q Consensus 71 ~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~ 150 (360)
+.. +..|..|.|| ||.||..|+.++|+.|++.+.+....-.. .....|..|. ||||+|+
T Consensus 4 a~~-~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~----------~~~~~~~~g~---------tpL~~A~ 62 (273)
T 2pnn_A 4 AGE-KPPRLYDRRS-IFDAVAQSNCQELESLLPFLQRSKKRLTD----------SEFKDPETGK---------TCLLKAM 62 (273)
T ss_dssp --------CCCHHH-HHHHHHTTCSSTTTTHHHHHHHSCCCTTS----------GGGSCTTTCC---------CHHHHHH
T ss_pred ccC-CCCCcccchH-HHHHHHcCCHHHHHHHHHHHhhcccccCC----------cccccCcCCC---------CHHHHHH
Confidence 344 6788999999 99999999999999999865433210000 0001466775 7777777
Q ss_pred hc---CCcHHHHHHHHhhCCCCC-------c-cccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccc
Q 039483 151 EY---EHSSHTVVAILKSCTSVS-------H-IYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGI 219 (360)
Q Consensus 151 ~~---g~~~~~~~~Ll~~g~~~~-------~-~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~ 219 (360)
.. |+ .+++++|++.|+++. . ...+|..|.||||+|+..|+. +++++|++.+ .+++..
T Consensus 63 ~~~~~g~-~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~----------~~v~~Ll~~g-a~~~~~ 130 (273)
T 2pnn_A 63 LNLHNGQ-NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNM----------TLVTLLVENG-ADVQAA 130 (273)
T ss_dssp HSCBTTB-CHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCH----------HHHHHHHHTT-CCTTCC
T ss_pred HHHhcCC-hHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCH----------HHHHHHHHCC-CCcCcc
Confidence 65 88 999999999985421 1 001466899999999999999 9999999998 888888
Q ss_pred cC--------------CCChHHHHHHHcCCHHHHHHHHh---cCCccccccccCCCCchhhhhhcCC
Q 039483 220 DQ--------------CWWTPIHYAAYHRNYLILKLILK---IDRTAAKIADKDRKMTALHLVHGPK 269 (360)
Q Consensus 220 d~--------------~g~t~Lh~A~~~~~~~~v~~Ll~---~g~~~~~~~d~~~g~tpLh~A~~~~ 269 (360)
+. .|+||||+|+..|+.+++++|++ .|+++ +.+|. .|+||||+|+..+
T Consensus 131 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~-~~~d~-~g~tpLh~A~~~~ 195 (273)
T 2pnn_A 131 ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI-SARDS-VGNTVLHALVEVA 195 (273)
T ss_dssp BCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCT-TSCCHHHHHHHHC
T ss_pred ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc-eeeCC-CCCcHHHHHHHcc
Confidence 86 79999999999999999999999 88888 77776 6666666665433
No 51
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.96 E-value=9.5e-31 Score=242.59 Aligned_cols=219 Identities=16% Similarity=0.079 Sum_probs=166.8
Q ss_pred CCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcc-----cC----------Cc-------------ccccc-ccccccccc
Q 039483 23 PQIDPNLFKVAAAGNLEPFKDMAREVIESLLTA-----RS----------RT-------------QSCIS-TSNCRRQKM 73 (360)
Q Consensus 23 ~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~-----~~----------~t-------------~~~v~-l~~~~~~~~ 73 (360)
..+.++++ |+.++++.|++...+...+. .+ .+ .++++ +... +.++
T Consensus 50 ~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~-g~dv 123 (327)
T 1sw6_A 50 PSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT-QLNL 123 (327)
T ss_dssp CCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTS-CCCS
T ss_pred CCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhc-CCCc
Confidence 34555555 99999999999654322100 00 00 44555 7777 8999
Q ss_pred cCC-CCCCCCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhc
Q 039483 74 CQP-VTAKGDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEY 152 (360)
Q Consensus 74 ~~~-~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~ 152 (360)
+. +|..|.|| ||+||..|+.++|++|+++|++++. +|..|. ||||+|+..
T Consensus 124 -n~~~d~~g~Tp-Lh~Aa~~g~~~~v~~Ll~~Gad~n~------------------~d~~g~---------TpLh~A~~~ 174 (327)
T 1sw6_A 124 -NIPVDEHGNTP-LHWLTSIANLELVKHLVKHGSNRLY------------------GDNMGE---------SCLVKAVKS 174 (327)
T ss_dssp -CSCCSTTCCCH-HHHHHHTTCHHHHHHHHHTTCCTTB------------------CCTTCC---------CHHHHHHHS
T ss_pred -ccccCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCCC------------------cCCCCC---------CHHHHHHHh
Confidence 88 89999999 9999999999999999999999998 888886 666666666
Q ss_pred CCc--HHHHHHHHhhC-CCCCccccCCCCCCcHHHHHHh----cCCcccccccCChHHHHHHHHhcC-------------
Q 039483 153 EHS--SHTVVAILKSC-TSVSHIYMKAPMERQALHAATM----HIDLCKFNHTLSNDCAVQQLFEGK------------- 212 (360)
Q Consensus 153 g~~--~~~~~~Ll~~g-~~~~~~~~~d~~g~t~Lh~A~~----~~~~~~~~~~~~~~~~~~~Ll~~~------------- 212 (360)
|+. .++++.|++.+ .+++. +|..|+||||+|+. .|+. +++++|++.+
T Consensus 175 g~~~~~~~~~~ll~~~~~~~~~---~d~~g~tpLh~A~~~~~~~g~~----------~~v~~Ll~~~~~~~~~~~~~~i~ 241 (327)
T 1sw6_A 175 VNNYDSGTFEALLDYLYPCLIL---EDSMNRTILHHIIITSGMTGCS----------AAAKYYLDILMGWIVKKQNRPIQ 241 (327)
T ss_dssp SHHHHTTCHHHHHHHHGGGGGE---ECTTCCCHHHHHHHHHTSTTCH----------HHHHHHHHHHHHHHHHGGGCCEE
T ss_pred cccccHHHHHHHHHhhhccccC---CCCCCCCHHHHHHHHccccccH----------HHHHHHHHHHHHHHhcccchHHH
Confidence 541 36778888876 66888 99999999999999 8899 9999999873
Q ss_pred ------ccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCccccccccCCCCchhhhhhcCCccc-ccccc--cccCcc
Q 039483 213 ------KSMIKGIDQCWWTPIHYAAYHRNYLILKLILKIDRTAAKIADKDRKMTALHLVHGPKGCQ-NNMLA--SSLMDE 283 (360)
Q Consensus 213 ------~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~-~~~L~--~~~~~~ 283 (360)
..+++..+..|+||||.|+. +++|++++ + +.+|. .|+||||+|+..++.+ +++|+ +++++.
T Consensus 242 ~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~~--~-n~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~ 311 (327)
T 1sw6_A 242 SGTNEKESKPNDKNGERKDSILENLD------LKWIIANM--L-NAQDS-NGDTCLNIAARLGNISIVDALLDYGADPFI 311 (327)
T ss_dssp EC----------------CHHHHHCS------HHHHHHHT--T-TCCCT-TSCCHHHHHHHHCCHHHHHHHHHTTCCTTC
T ss_pred hhhhcccCCcccccccCCChhHHHHH------HHHHHHhC--C-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence 37788899999999999986 88999884 5 77898 9999999999999999 89988 499999
Q ss_pred CCCCCCcHHHHHHHcC
Q 039483 284 GDAKGNTTVHFFAAVH 299 (360)
Q Consensus 284 ~d~~g~Tpl~~A~~~~ 299 (360)
+|..|+||||+|+++|
T Consensus 312 ~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 312 ANKSGLRPVDFGAGLE 327 (327)
T ss_dssp CCTTSCCGGGGTCC--
T ss_pred cCCCCCCHHHHHHhcC
Confidence 9999999999998764
No 52
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=4.2e-29 Score=209.36 Aligned_cols=169 Identities=16% Similarity=0.103 Sum_probs=147.5
Q ss_pred CHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHHHHhc
Q 039483 26 DPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLIERA 105 (360)
Q Consensus 26 ~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g 105 (360)
.+|||.||..|+.+.++.|++.. +..+ +.+|..|.|| ||+|+..|+.+++++|+++|
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~---------------------~~~~-~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~g 59 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKG---------------------DNLV-NKPDERGFTP-LIWASAFGEIETVRFLLEWG 59 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTC---------------------SGGG-GCCCTTSCCH-HHHHHHTTCHHHHHHHHHHT
T ss_pred hhhHHHHHHcCCHHHHHHHHHcC---------------------cccc-cCCCCCCCCH-HHHHHHcCCHHHHHHHHHcC
Confidence 36799999999999999998832 3345 7888999999 99999999999999999999
Q ss_pred cccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHHH
Q 039483 106 KLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQALHA 185 (360)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~ 185 (360)
++++. .|..|. ||||+|+..|+ .+++++|+++|++++. +|..|.||||+
T Consensus 60 ~~~~~------------------~~~~g~---------t~L~~A~~~~~-~~~v~~Ll~~g~~~~~---~~~~g~t~L~~ 108 (172)
T 3v30_A 60 ADPHI------------------LAKERE---------SALSLASTGGY-TDIVGLLLERDVDINI---YDWNGGTPLLY 108 (172)
T ss_dssp CCTTC------------------CCTTCC---------CHHHHHHHTTC-HHHHHHHHTTTCCTTC---CCTTSCCHHHH
T ss_pred CCchh------------------hcccCC---------CHHHHHHHCCC-HHHHHHHHHcCCCCCC---CCCCCCCHHHH
Confidence 99887 777775 77888888999 9999999999999999 99999999999
Q ss_pred HHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCccccccccCCCCch
Q 039483 186 ATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKIDRTAAKIADKDRKMTA 261 (360)
Q Consensus 186 A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~g~tp 261 (360)
|+..++. +++++|++.+ .+++.+|..|+||||+|+..|+.+++++|+++|+++ ..++. .|.||
T Consensus 109 A~~~~~~----------~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~-~~~~~-~~~~p 171 (172)
T 3v30_A 109 AVRGNHV----------KCVEALLARG-ADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKL-FQSNL-VPADP 171 (172)
T ss_dssp HHHTTCH----------HHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH-SCC--------
T ss_pred HHHcCCH----------HHHHHHHHcC-CCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHH-hcccC-CCCCC
Confidence 9999999 9999999998 889999999999999999999999999999999998 77777 77776
No 53
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=2.6e-29 Score=227.35 Aligned_cols=190 Identities=16% Similarity=0.131 Sum_probs=172.1
Q ss_pred CCCCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHH
Q 039483 79 AKGDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHT 158 (360)
Q Consensus 79 ~~g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~ 158 (360)
..+.++ +|.|+..|+.+.++.+++.+.+ ..++..|..|. ||||+|+..|+ .++
T Consensus 74 ~~~~~~-l~~a~~~~~~~~~~~l~~~~~~----------------~~~n~~d~~g~---------T~Lh~A~~~g~-~~~ 126 (276)
T 4hbd_A 74 LACRSD-AHPELVRRHLVTFRAMSARLLD----------------YVVNIADSNGN---------TALHYSVSHAN-FPV 126 (276)
T ss_dssp HHHSTT-CCHHHHHHHHHHHHHHCHHHHH----------------HHHTCCCTTSC---------CHHHHHHHTTC-HHH
T ss_pred HHhccC-CCHHHHHHHHHHHHHHHHHHHh----------------hcCcCCCCCCC---------CHHHHHHHCCC-HHH
Confidence 345688 9999999999999999988765 22334888885 88888899999 999
Q ss_pred HHHHHhhCC-CCCccccCCCCCCcHHHHHH-----hcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHH
Q 039483 159 VVAILKSCT-SVSHIYMKAPMERQALHAAT-----MHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAY 232 (360)
Q Consensus 159 ~~~Ll~~g~-~~~~~~~~d~~g~t~Lh~A~-----~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~ 232 (360)
+++|++.|+ +++. .+..|.||||+|+ ..++. ++++.|++.+ ..++..+..|+||||+|+.
T Consensus 127 v~~Ll~~g~~~~~~---~~~~g~tpL~~a~~~~~~~~~~~----------~~v~~Ll~~g-~~~~~~~~~g~tpLh~A~~ 192 (276)
T 4hbd_A 127 VQQLLDSGVCKVDK---QNRAGYSPIMLTALATLKTQDDI----------ETVLQLFRLG-NINAKASQAGQTALMLAVS 192 (276)
T ss_dssp HHHHHHTSCCCTTC---CCTTSCCHHHHGGGCCCCSHHHH----------HHHHHHHHHS-CTTCCCTTTCCCHHHHHHH
T ss_pred HHHHHHCCCCcCCC---CCCCCCCHHHHHHHHHhhhhhhH----------HHHHHHHHcC-CCccccCCCCCCHHHHHHH
Confidence 999999998 8998 9999999999999 56778 9999999999 7778889999999999999
Q ss_pred cCCHHHHHHHHhcCCccccccccCCCCchhhhhhcCCccc-cccccc---ccCccCCCCCCcHHHHHHHcCCHHHHHHHh
Q 039483 233 HRNYLILKLILKIDRTAAKIADKDRKMTALHLVHGPKGCQ-NNMLAS---SLMDEGDAKGNTTVHFFAAVHRKEIFDDLS 308 (360)
Q Consensus 233 ~~~~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~-~~~L~~---~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~ 308 (360)
.|+.+++++|+++|+++ +.+|. .|+||||+|+..++.+ +++|+. ++++.+|..|+||||+|++.|+.++++.|+
T Consensus 193 ~g~~~~v~~Ll~~gad~-n~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll 270 (276)
T 4hbd_A 193 HGRVDVVKALLACEADV-NVQDD-DGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLY 270 (276)
T ss_dssp TTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred cCCHHHHHHHHhCCCCC-CCCCC-CCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999 99999 9999999999999999 888874 889999999999999999999999999998
Q ss_pred hhh
Q 039483 309 GRV 311 (360)
Q Consensus 309 ~~~ 311 (360)
++.
T Consensus 271 ~~~ 273 (276)
T 4hbd_A 271 SRM 273 (276)
T ss_dssp HHC
T ss_pred hcc
Confidence 874
No 54
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=1.6e-28 Score=203.54 Aligned_cols=159 Identities=17% Similarity=0.108 Sum_probs=144.6
Q ss_pred CCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHHHH
Q 039483 24 QIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLIE 103 (360)
Q Consensus 24 ~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~ 103 (360)
...++||.|+..|+.+.++.|++. +..+ +.+|..|.|| ||+|+. |+.+++++|++
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~----------------------~~~~-~~~~~~g~t~-L~~A~~-~~~~~v~~Ll~ 58 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQN----------------------NVNV-NAQNGFGRTA-LQVMKL-GNPEIARRLLL 58 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTS----------------------CCCT-TCCCTTSCCH-HHHCCS-SCHHHHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhC----------------------CCCc-cccCccCccH-HHHHHc-CcHHHHHHHHH
Confidence 345899999999999999999873 6667 8889999999 999999 99999999999
Q ss_pred hccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHH
Q 039483 104 RAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQAL 183 (360)
Q Consensus 104 ~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~L 183 (360)
+|++++. +|..|. ||||+|+..|+ .+++++|+++|++++. +|..|.|||
T Consensus 59 ~g~~~~~------------------~~~~g~---------t~L~~A~~~~~-~~~v~~Ll~~g~~~~~---~~~~g~t~L 107 (162)
T 1ihb_A 59 RGANPDL------------------KDRTGF---------AVIHDAARAGF-LDTLQTLLEFQADVNI---EDNEGNLPL 107 (162)
T ss_dssp TTCCTTC------------------CCTTSC---------CHHHHHHHHTC-HHHHHHHHHTTCCTTC---CCTTSCCHH
T ss_pred cCCCCCC------------------CCCCCC---------CHHHHHHHcCC-HHHHHHHHHcCCCCCC---cCCCCCCHH
Confidence 9999988 777875 78888889999 9999999999999999 999999999
Q ss_pred HHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCc
Q 039483 184 HAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKIDRT 248 (360)
Q Consensus 184 h~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~ 248 (360)
|+|+..|+. +++++|++.+...++..|..|+||||+|+..|+.+++++|+++|++
T Consensus 108 ~~A~~~~~~----------~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 108 HLAAKEGHL----------RVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp HHHHHTTCH----------HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred HHHHHcCCH----------HHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 999999999 9999999999555789999999999999999999999999999975
No 55
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=5.5e-31 Score=231.90 Aligned_cols=194 Identities=12% Similarity=-0.004 Sum_probs=169.2
Q ss_pred CCCCCCCCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCC
Q 039483 75 QPVTAKGDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEH 154 (360)
Q Consensus 75 ~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~ 154 (360)
+..+.+|.|| ||.|+..|+.+++++|++.|++++. +|..|. ||||+|+..|+
T Consensus 15 ~~~~~~~~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~------------------~d~~g~---------tpLh~A~~~g~ 66 (229)
T 2vge_A 15 RRARLNPLVL-LLDAALTGELEVVQQAVKEMNDPSQ------------------PNEEGI---------TALHNAICGAN 66 (229)
T ss_dssp CCTTSCHHHH-HHHHHHHTCHHHHHHHHHHSSCTTC------------------CCTTSC---------CHHHHHHHTTC
T ss_pred cccccchhHH-HHHHHHcCCHHHHHHHHhcCCCCCC------------------CCCCCC---------CHHHHHHHcCC
Confidence 5566678899 9999999999999999999999988 788885 88888899999
Q ss_pred cHHHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCcccccccc-CCCChHHHHH--H
Q 039483 155 SSHTVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGID-QCWWTPIHYA--A 231 (360)
Q Consensus 155 ~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d-~~g~t~Lh~A--~ 231 (360)
.+++++|++.|++++. +|..|.||||+|+..|+. +++++|++.+ .+++..+ ..|+||||+| +
T Consensus 67 -~~~v~~Ll~~ga~~n~---~d~~g~tpLh~A~~~g~~----------~~v~~Ll~~g-a~~~~~~~~~g~tpL~~A~a~ 131 (229)
T 2vge_A 67 -YSIVDFLITAGANVNS---PDSHGWTPLHCAASCNDT----------VICMALVQHG-AAIFATTLSDGATAFEKCDPY 131 (229)
T ss_dssp -HHHHHHHHHTTCCTTC---CCTTCCCHHHHHHHTTCH----------HHHHHHHTTT-CCTTCCCSSTTCCTGGGCCTT
T ss_pred -HHHHHHHHHCCCCCCC---CCCCCCCHHHHHHHcCCH----------HHHHHHHHcC-CCcccccCCCCCCHHHHHHHH
Confidence 9999999999999999 999999999999999999 9999999998 7788886 6999999999 9
Q ss_pred HcCCHHHHHHHHhcCCccccccccCCCCchhhhhhcCCcccccccc--ccc--CccCCCCCCcHHHHHHHcCCHHHHHH-
Q 039483 232 YHRNYLILKLILKIDRTAAKIADKDRKMTALHLVHGPKGCQNNMLA--SSL--MDEGDAKGNTTVHFFAAVHRKEIFDD- 306 (360)
Q Consensus 232 ~~~~~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~~~~L~--~~~--~~~~d~~g~Tpl~~A~~~~~~~i~~~- 306 (360)
..|+.+++++|+++|+++ +.++. .|.||++.++..... ++|+ +++ ++.+|..|+||||+|++.|+.++++.
T Consensus 132 ~~~~~~~v~~Ll~~ga~~-~~~~~-~~~~~l~~~~~~~~~--~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~ 207 (229)
T 2vge_A 132 REGYADCATYLADVEQSM-GLMNS-GAVYALWDYSAEFGD--ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRN 207 (229)
T ss_dssp STTHHHHHHHHHHHHHHT-TTSGG-GEEEESSCBCCSSTT--BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred hcChHHHHHHHHHcCCCc-ccccC-CchHHHHHHhhcccc--ccCccccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence 999999999999999999 99999 999999976555433 3444 344 78899999999999999999999874
Q ss_pred Hhhhhcccc
Q 039483 307 LSGRVKATM 315 (360)
Q Consensus 307 l~~~~~~~~ 315 (360)
+++..+...
T Consensus 208 ~l~~~p~~~ 216 (229)
T 2vge_A 208 YFGLFPRVK 216 (229)
T ss_dssp GEESSCCCC
T ss_pred hhhhCCCCC
Confidence 444443333
No 56
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=7.5e-29 Score=211.70 Aligned_cols=150 Identities=15% Similarity=0.045 Sum_probs=131.8
Q ss_pred ccccCCCCCCCCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHH
Q 039483 71 QKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAA 150 (360)
Q Consensus 71 ~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~ 150 (360)
.++ +.+|..|.|| ||+|+..|+.+++++|+++|++++. .|..|. ||||+|+
T Consensus 26 ~~~-n~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~~~~------------------~~~~g~---------t~L~~A~ 76 (192)
T 2rfm_A 26 FLR-NYRDSYNRTP-LMVACMLGMENAIDKLVENFDKLED------------------KDIEGS---------TALIWAV 76 (192)
T ss_dssp HHH-TCCCTTCCCH-HHHHHHHTCGGGHHHHHHHHCCTTC------------------CCTTSC---------CHHHHHH
T ss_pred HHH-hCcCCCCCCH-HHHHHHcCCHHHHHHHHHhcccccc------------------ccccCc---------cHHHHHH
Confidence 345 7789999999 9999999999999999999998887 777775 7888888
Q ss_pred hcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHH
Q 039483 151 EYEHSSHTVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYA 230 (360)
Q Consensus 151 ~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A 230 (360)
..|+ .+++++|+++|++++. +|..|.||||+|+..++. +++++|++.+ .+++..|..|+||||+|
T Consensus 77 ~~~~-~~~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~----------~~v~~Ll~~g-~~~~~~~~~g~t~L~~A 141 (192)
T 2rfm_A 77 KNNR-LGIAEKLLSKGSNVNT---KDFSGKTPLMWSIIFGYS----------EMSYFLLEHG-ANVNDRNLEGETPLIVA 141 (192)
T ss_dssp HTTC-HHHHHHHHHHTCCTTC---CCTTSCCHHHHHHHHTCH----------HHHHHHHHTT-CCSSCCCTTCCCHHHHH
T ss_pred HcCC-HHHHHHHHHCCCCCCC---CCCCCCcHHHHHHHcCCH----------HHHHHHHHCC-CCCCCCCCCCCCHHHHH
Confidence 8999 9999999999999999 999999999999999999 9999999998 88999999999999999
Q ss_pred HHcCCHHHHHHHHhcCCccccccccCCCCchhhhhh
Q 039483 231 AYHRNYLILKLILKIDRTAAKIADKDRKMTALHLVH 266 (360)
Q Consensus 231 ~~~~~~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~ 266 (360)
+..|+.+++++|+++|+++ +.+|. .|.||||+|+
T Consensus 142 ~~~~~~~~v~~Ll~~ga~~-~~~~~-~g~t~l~~A~ 175 (192)
T 2rfm_A 142 SKYGRSEIVKKLLELGADI-SARDL-TGLTAEASAR 175 (192)
T ss_dssp HHHTCHHHHHHHHHTTCCT-TCBCT-TSCBHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCCC-CCcCC-CCCCHHHHHH
Confidence 9999999999999999888 55555 4444444333
No 57
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.96 E-value=5.7e-29 Score=230.61 Aligned_cols=214 Identities=12% Similarity=0.091 Sum_probs=166.5
Q ss_pred ccccc-ccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHHHHhccccCcccc--------------ccccc------
Q 039483 60 QSCIS-TSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDE--------------ELESG------ 118 (360)
Q Consensus 60 ~~~v~-l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~--------------~~~~~------ 118 (360)
.++++ |.+. +..+ +..+..|.|+ ++ |+.++|+.|+++|++++...- .+.+.
T Consensus 32 ~dlv~~ll~~-ga~i-~~~~~~g~~~-~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 103 (327)
T 1sw6_A 32 HDLTSDFLSS-PLKI-MKALPSPVVN-DN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHV 103 (327)
T ss_dssp TTCCCSTTTS-SCCC-EECBCCCCCC-CH-----HHHHHHHHHHHHHHC-------------------------------
T ss_pred CchHHHHhhC-Cccc-ccCCCCCCcc-cC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHH
Confidence 45555 6666 8999 9999999999 88 999999999999988654110 00010
Q ss_pred ------chhhHHH------hhc-ccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHHH
Q 039483 119 ------VGASRQM------IRM-TNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQALHA 185 (360)
Q Consensus 119 ------~~~~~~~------l~~-~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~ 185 (360)
.++.+.+ ++. +|..|. ||||+|+..|+ .+++++|+++|++++. +|..|+||||+
T Consensus 104 a~~~~~~~~~~~l~~~g~dvn~~~d~~g~---------TpLh~Aa~~g~-~~~v~~Ll~~Gad~n~---~d~~g~TpLh~ 170 (327)
T 1sw6_A 104 SFDSLLQEVNDAFPNTQLNLNIPVDEHGN---------TPLHWLTSIAN-LELVKHLVKHGSNRLY---GDNMGESCLVK 170 (327)
T ss_dssp CHHHHHHHHHHHCTTSCCCSCSCCSTTCC---------CHHHHHHHTTC-HHHHHHHHHTTCCTTB---CCTTCCCHHHH
T ss_pred HHHhhHHHHHHHHHhcCCCcccccCCCCC---------cHHHHHHHcCC-HHHHHHHHHcCCCCCC---cCCCCCCHHHH
Confidence 1111222 344 677775 88888899999 9999999999999999 99999999999
Q ss_pred HHhcCC---cccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHH----cCCHHHHHHHHhc-------------
Q 039483 186 ATMHID---LCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAY----HRNYLILKLILKI------------- 245 (360)
Q Consensus 186 A~~~~~---~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~----~~~~~~v~~Ll~~------------- 245 (360)
|+..|+ . ++++.|++.+..+++.+|..|+||||+|+. .|+.+++++|++.
T Consensus 171 A~~~g~~~~~----------~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i 240 (327)
T 1sw6_A 171 AVKSVNNYDS----------GTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPI 240 (327)
T ss_dssp HHHSSHHHHT----------TCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCE
T ss_pred HHHhcccccH----------HHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHH
Confidence 999998 7 788888888767789999999999999999 8999999999977
Q ss_pred -------CCccccccccCCCCchhhhhhcCCcccccccccccCccCCCCCCcHHHHHHHcCCHHHHHHHhhhh
Q 039483 246 -------DRTAAKIADKDRKMTALHLVHGPKGCQNNMLASSLMDEGDAKGNTTVHFFAAVHRKEIFDDLSGRV 311 (360)
Q Consensus 246 -------g~~~~~~~d~~~g~tpLh~A~~~~~~~~~~L~~~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~~~~ 311 (360)
|+++ +.++. .|.||||.|+. +++|++.+++.+|..|+||||+|++.|+.++++.|+++.
T Consensus 241 ~~~~~~~g~~~-~~~~~-~g~t~L~~a~~-----~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~G 306 (327)
T 1sw6_A 241 QSGTNEKESKP-NDKNG-ERKDSILENLD-----LKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG 306 (327)
T ss_dssp EEC------------------CHHHHHCS-----HHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT
T ss_pred HhhhhcccCCc-ccccc-cCCChhHHHHH-----HHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 8898 99999 99999999975 777888889999999999999999999999999999874
No 58
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=3.8e-29 Score=226.28 Aligned_cols=191 Identities=17% Similarity=0.177 Sum_probs=164.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHHHHhcc
Q 039483 27 PNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLIERAK 106 (360)
Q Consensus 27 ~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g~ 106 (360)
+++|.|+..|+.+.++.+++...+ ..+ +.+|..|.|| ||+||..|+.+++++|++.|+
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~--------------------~~~-n~~d~~g~T~-Lh~A~~~g~~~~v~~Ll~~g~ 135 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLD--------------------YVV-NIADSNGNTA-LHYSVSHANFPVVQQLLDSGV 135 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHH--------------------HHH-TCCCTTSCCH-HHHHHHTTCHHHHHHHHHTSC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHh--------------------hcC-cCCCCCCCCH-HHHHHHCCCHHHHHHHHHCCC
Confidence 446777788888888887774332 235 7899999999 999999999999999999998
Q ss_pred -ccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHHH
Q 039483 107 -LVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQALHA 185 (360)
Q Consensus 107 -~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~ 185 (360)
+++. .|..|.||||+|+- ..+...++ .+++++|++.|..++. .+..|.||||+
T Consensus 136 ~~~~~------------------~~~~g~tpL~~a~~----~~~~~~~~-~~~v~~Ll~~g~~~~~---~~~~g~tpLh~ 189 (276)
T 4hbd_A 136 CKVDK------------------QNRAGYSPIMLTAL----ATLKTQDD-IETVLQLFRLGNINAK---ASQAGQTALML 189 (276)
T ss_dssp CCTTC------------------CCTTSCCHHHHGGG----CCCCSHHH-HHHHHHHHHHSCTTCC---CTTTCCCHHHH
T ss_pred CcCCC------------------CCCCCCCHHHHHHH----HHhhhhhh-HHHHHHHHHcCCCccc---cCCCCCCHHHH
Confidence 8887 88899766655531 01114567 9999999999988888 89999999999
Q ss_pred HHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHh-cCCccccccccCCCCchhhh
Q 039483 186 ATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILK-IDRTAAKIADKDRKMTALHL 264 (360)
Q Consensus 186 A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~-~g~~~~~~~d~~~g~tpLh~ 264 (360)
|+..|+. +++++|++.+ .+++.+|..|+||||+|+..|+.+++++|++ .|+++ +.+|. .|+||||+
T Consensus 190 A~~~g~~----------~~v~~Ll~~g-ad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~-~g~TpL~~ 256 (276)
T 4hbd_A 190 AVSHGRV----------DVVKALLACE-ADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDI-SLTDR-DGSTALMV 256 (276)
T ss_dssp HHHTTCH----------HHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCT-TCCCT-TSCCHHHH
T ss_pred HHHcCCH----------HHHHHHHhCC-CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCC-cCcCC-CCCCHHHH
Confidence 9999999 9999999998 8899999999999999999999999999998 89999 99999 99999999
Q ss_pred hhcCCccc-cccccc
Q 039483 265 VHGPKGCQ-NNMLAS 278 (360)
Q Consensus 265 A~~~~~~~-~~~L~~ 278 (360)
|+..++.+ +++|++
T Consensus 257 A~~~g~~~iv~~Ll~ 271 (276)
T 4hbd_A 257 ALDAGQSEIASMLYS 271 (276)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh
Confidence 99999988 777764
No 59
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=1.8e-28 Score=205.58 Aligned_cols=166 Identities=16% Similarity=0.076 Sum_probs=138.2
Q ss_pred CCChHHHHHHhcCCHHHHHHHHHhccc-cCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHH
Q 039483 81 GDTRSRHVAAKFDHCDIVSVLIERAKL-VQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTV 159 (360)
Q Consensus 81 g~tp~Lh~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~ 159 (360)
+.|| ||.|+..|+.++++.|++.+.+ ++. .|..|. ||||+|+..|+ .+++
T Consensus 2 ~~~~-L~~A~~~g~~~~v~~ll~~~~~~~~~------------------~~~~g~---------t~L~~A~~~~~-~~~v 52 (172)
T 3v30_A 2 DSLS-IHQLAAQGELDQLKEHLRKGDNLVNK------------------PDERGF---------TPLIWASAFGE-IETV 52 (172)
T ss_dssp --CC-HHHHHHTTCHHHHHHHHTTCSGGGGC------------------CCTTSC---------CHHHHHHHTTC-HHHH
T ss_pred chhh-HHHHHHcCCHHHHHHHHHcCcccccC------------------CCCCCC---------CHHHHHHHcCC-HHHH
Confidence 4688 9999999999999999999876 454 777775 78888889999 9999
Q ss_pred HHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHH
Q 039483 160 VAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLIL 239 (360)
Q Consensus 160 ~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v 239 (360)
++|+++|++++. ++..|.||||+|+..++. +++++|++.+ .+++..|..|+||||+|+..|+.+++
T Consensus 53 ~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~----------~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v 118 (172)
T 3v30_A 53 RFLLEWGADPHI---LAKERESALSLASTGGYT----------DIVGLLLERD-VDINIYDWNGGTPLLYAVRGNHVKCV 118 (172)
T ss_dssp HHHHHHTCCTTC---CCTTCCCHHHHHHHTTCH----------HHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHcCCCchh---hcccCCCHHHHHHHCCCH----------HHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 999999999999 999999999999999999 9999999998 88999999999999999999999999
Q ss_pred HHHHhcCCccccccccCCCCchhhhhhcCCccc-cccccc--ccCccCCCCCCcH
Q 039483 240 KLILKIDRTAAKIADKDRKMTALHLVHGPKGCQ-NNMLAS--SLMDEGDAKGNTT 291 (360)
Q Consensus 240 ~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~-~~~L~~--~~~~~~d~~g~Tp 291 (360)
++|+++|+++ +.++. .|+||||+|+..++.+ +++|+. ++...++..|.||
T Consensus 119 ~~Ll~~ga~~-~~~~~-~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 119 EALLARGADL-TTEAD-SGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHHTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHcCCCc-cccCC-CCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence 9999999998 88887 7777777777777766 666663 5556666666665
No 60
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=8.7e-28 Score=201.00 Aligned_cols=159 Identities=23% Similarity=0.262 Sum_probs=136.3
Q ss_pred CCCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHH
Q 039483 22 QPQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVL 101 (360)
Q Consensus 22 ~~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~L 101 (360)
.....++|+.||+.|+.++++.|++. +.++ +.+|..|.|| ||+|+..|+.+++++|
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~----------------------g~~~-~~~~~~g~t~-L~~A~~~~~~~~v~~L 66 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMAN----------------------GADV-NAEDASGWTP-LHLAAFNGHLEIVEVL 66 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHT----------------------TCCT-TCCCTTSCCH-HHHHHHTTCHHHHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHC----------------------CCCC-CCCCCCCCCH-HHHHHHcCCHHHHHHH
Confidence 34456789999999999999999883 5566 7788889999 9999999999999999
Q ss_pred HHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCc
Q 039483 102 IERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQ 181 (360)
Q Consensus 102 l~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t 181 (360)
+++|++++. .|..|. ||||+|+..|+ .+++++|+++|++++. +|..|.|
T Consensus 67 l~~g~~~~~------------------~~~~g~---------t~L~~A~~~~~-~~~~~~Ll~~g~~~~~---~~~~g~t 115 (169)
T 2y1l_E 67 LKNGADVNA------------------VDHAGM---------TPLRLAALFGH-LEIVEVLLKNGADVNA---NDMEGHT 115 (169)
T ss_dssp HHTTCCTTC------------------CCTTSC---------CHHHHHHHTTC-HHHHHHHHHTTCCTTC---CCTTSCC
T ss_pred HHcCCCCCc------------------cCCCCC---------CHHHHHHHcCC-HHHHHHHHHcCCCCCC---CCCCCCC
Confidence 999988887 677775 77778888888 9999999999999888 8889999
Q ss_pred HHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcC
Q 039483 182 ALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKID 246 (360)
Q Consensus 182 ~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g 246 (360)
|||+|+..++. +++++|++.+ .+++.+|..|.||||+|+..|+.+++++|++.|
T Consensus 116 ~L~~A~~~~~~----------~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 116 PLHLAAMFGHL----------EIVEVLLKNG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp HHHHHHHTTCH----------HHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred HHHHHHHcCCH----------HHHHHHHHcC-CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 99999999999 9999999988 778888999999999999999999999998875
No 61
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=6.4e-28 Score=201.13 Aligned_cols=159 Identities=14% Similarity=0.061 Sum_probs=136.3
Q ss_pred CCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHHHHh
Q 039483 25 IDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLIER 104 (360)
Q Consensus 25 ~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~ 104 (360)
+.+|||.||..|+.+.++.|++. +..+ +.+|..|.|| ||+|+..|+.+++++|+++
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~----------------------~~~~-~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~ 58 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQ----------------------ENVI-NHTDEEGFTP-LMWAAAHGQIAVVEFLLQN 58 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHH----------------------SSCT-TCCCTTSCCH-HHHHHHTTCHHHHHHHHHT
T ss_pred CcchHHHHHHCCCHHHHHHHHHc----------------------CCCc-CCCCCCCCCH-HHHHHHCCCHHHHHHHHHc
Confidence 35779999999999999998874 5556 7788889999 9999999999999999999
Q ss_pred ccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHH
Q 039483 105 AKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQALH 184 (360)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh 184 (360)
|++++. .|..|. ||||+|+..|+ .+++++|+++|++++. +|..|.||||
T Consensus 59 g~~~~~------------------~~~~g~---------t~L~~A~~~~~-~~~v~~Ll~~g~~~~~---~~~~g~t~L~ 107 (167)
T 3v31_A 59 GADPQL------------------LGKGRE---------SALSLACSKGY-TDIVKMLLDCGVDVNE---YDWNGGTPLL 107 (167)
T ss_dssp TCCTTC------------------CCTTCC---------CHHHHHHHHTC-HHHHHHHHHHTCCTTC---CCTTSCCHHH
T ss_pred CCCCCC------------------cCCCCC---------cHHHHHHHcCC-HHHHHHHHHCCCCCCc---CCCCCCCHHH
Confidence 988877 677774 77777888888 9999999999988888 8888999999
Q ss_pred HHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCcc
Q 039483 185 AATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKIDRTA 249 (360)
Q Consensus 185 ~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~ 249 (360)
+|+..|+. +++++|++.+ .+++..|..|+||||+|+..|+.+++++|++++.++
T Consensus 108 ~A~~~~~~----------~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~ 161 (167)
T 3v31_A 108 YAVHGNHV----------KCVKMLLESG-ADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161 (167)
T ss_dssp HHHHTTCH----------HHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCH----------HHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 99999999 9999999887 778888889999999999999999999998887665
No 62
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=1.4e-27 Score=203.88 Aligned_cols=160 Identities=16% Similarity=0.115 Sum_probs=148.0
Q ss_pred CCCCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHH
Q 039483 21 SQPQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSV 100 (360)
Q Consensus 21 ~~~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~ 100 (360)
....+.+|||.|+..|+.++++.|++. +.++ +.+|..|.|| ||+|+..|+.+++++
T Consensus 31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~----------------------~~~~-~~~~~~g~t~-L~~A~~~~~~~~v~~ 86 (192)
T 2rfm_A 31 RDSYNRTPLMVACMLGMENAIDKLVEN----------------------FDKL-EDKDIEGSTA-LIWAVKNNRLGIAEK 86 (192)
T ss_dssp CCTTCCCHHHHHHHHTCGGGHHHHHHH----------------------HCCT-TCCCTTSCCH-HHHHHHTTCHHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHh----------------------cccc-ccccccCccH-HHHHHHcCCHHHHHH
Confidence 345678999999999999999999984 4556 7888999999 999999999999999
Q ss_pred HHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCC
Q 039483 101 LIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMER 180 (360)
Q Consensus 101 Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~ 180 (360)
|+++|++++. .|..|. ||||+|+..|+ .+++++|+++|++++. +|..|.
T Consensus 87 Ll~~g~~~~~------------------~~~~g~---------t~L~~A~~~~~-~~~v~~Ll~~g~~~~~---~~~~g~ 135 (192)
T 2rfm_A 87 LLSKGSNVNT------------------KDFSGK---------TPLMWSIIFGY-SEMSYFLLEHGANVND---RNLEGE 135 (192)
T ss_dssp HHHHTCCTTC------------------CCTTSC---------CHHHHHHHHTC-HHHHHHHHHTTCCSSC---CCTTCC
T ss_pred HHHCCCCCCC------------------CCCCCC---------cHHHHHHHcCC-HHHHHHHHHCCCCCCC---CCCCCC
Confidence 9999999888 778875 78888889999 9999999999999999 999999
Q ss_pred cHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcC
Q 039483 181 QALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKID 246 (360)
Q Consensus 181 t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g 246 (360)
||||+|+..|+. +++++|++.+ .+++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 136 t~L~~A~~~~~~----------~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 136 TPLIVASKYGRS----------EIVKKLLELG-ADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp CHHHHHHHHTCH----------HHHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHcCCH----------HHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence 999999999999 9999999998 889999999999999999999999999999765
No 63
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=9.3e-28 Score=200.16 Aligned_cols=157 Identities=18% Similarity=0.168 Sum_probs=133.0
Q ss_pred CCCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHH
Q 039483 80 KGDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTV 159 (360)
Q Consensus 80 ~g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~ 159 (360)
.|.|| ||.|+..|+.+++++|++.|.+++. .|..|. ||||+|+..|+ .+++
T Consensus 2 ~~~t~-L~~A~~~g~~~~v~~ll~~~~~~~~------------------~~~~g~---------t~L~~A~~~~~-~~~v 52 (167)
T 3v31_A 2 ANSLS-VHQLAAQGEMLYLATRIEQENVINH------------------TDEEGF---------TPLMWAAAHGQ-IAVV 52 (167)
T ss_dssp TTCCC-HHHHHHTTCHHHHHHHHHHSSCTTC------------------CCTTSC---------CHHHHHHHTTC-HHHH
T ss_pred CCcch-HHHHHHCCCHHHHHHHHHcCCCcCC------------------CCCCCC---------CHHHHHHHCCC-HHHH
Confidence 57899 9999999999999999999988887 777775 77788888899 9999
Q ss_pred HHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHH
Q 039483 160 VAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLIL 239 (360)
Q Consensus 160 ~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v 239 (360)
++|+++|++++. ++..|.||||+|+..++. +++++|++.+ .+++..|..|+||||+|+..|+.+++
T Consensus 53 ~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~----------~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v 118 (167)
T 3v31_A 53 EFLLQNGADPQL---LGKGRESALSLACSKGYT----------DIVKMLLDCG-VDVNEYDWNGGTPLLYAVHGNHVKCV 118 (167)
T ss_dssp HHHHHTTCCTTC---CCTTCCCHHHHHHHHTCH----------HHHHHHHHHT-CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHcCCCCCC---cCCCCCcHHHHHHHcCCH----------HHHHHHHHCC-CCCCcCCCCCCCHHHHHHHcCCHHHH
Confidence 999999999998 899999999999999999 9999999988 77889999999999999999999999
Q ss_pred HHHHhcCCccccccccCCCCchhhhhhcCCcccccccccccCccCCCCCCcHHHHHHHcCCHHHHHHHhhhh
Q 039483 240 KLILKIDRTAAKIADKDRKMTALHLVHGPKGCQNNMLASSLMDEGDAKGNTTVHFFAAVHRKEIFDDLSGRV 311 (360)
Q Consensus 240 ~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~~~~L~~~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~~~~ 311 (360)
++|+++|+++ +.++. .|+||+|+|++.|+.++++.|.++.
T Consensus 119 ~~Ll~~g~~~-~~~~~-------------------------------~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (167)
T 3v31_A 119 KMLLESGADP-TIETD-------------------------------SGYNSMDLAVALGYRSVQQVIESHL 158 (167)
T ss_dssp HHHHHTTCCT-TCCCT-------------------------------TSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCCC-CCcCC-------------------------------CCCCHHHHHHHcCcHHHHHHHHHHH
Confidence 9999999887 55554 4556666666666666666666553
No 64
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=1.4e-27 Score=199.69 Aligned_cols=151 Identities=22% Similarity=0.189 Sum_probs=126.4
Q ss_pred CCCCCCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcH
Q 039483 77 VTAKGDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSS 156 (360)
Q Consensus 77 ~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~ 156 (360)
....+.|| ||.||+.|+.+++++|+++|++++. .|..|. ||||+|+..|+ .
T Consensus 10 ~~~~~~~~-l~~A~~~g~~~~v~~Ll~~g~~~~~------------------~~~~g~---------t~L~~A~~~~~-~ 60 (169)
T 2y1l_E 10 HGSDLGKK-LLEAARAGRDDEVRILMANGADVNA------------------EDASGW---------TPLHLAAFNGH-L 60 (169)
T ss_dssp ---CHHHH-HHHHHHHTCHHHHHHHHHTTCCTTC------------------CCTTSC---------CHHHHHHHTTC-H
T ss_pred CCCcccch-HHHHHHcCCHHHHHHHHHCCCCCCC------------------CCCCCC---------CHHHHHHHcCC-H
Confidence 34556788 9999999999999999999998887 777775 77788888999 9
Q ss_pred HHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCH
Q 039483 157 HTVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNY 236 (360)
Q Consensus 157 ~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~ 236 (360)
+++++|+++|++++. ++..|.||||+|+..|+. +++++|++.+ .+++..|..|+||||+|+..|+.
T Consensus 61 ~~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~----------~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~ 126 (169)
T 2y1l_E 61 EIVEVLLKNGADVNA---VDHAGMTPLRLAALFGHL----------EIVEVLLKNG-ADVNANDMEGHTPLHLAAMFGHL 126 (169)
T ss_dssp HHHHHHHHTTCCTTC---CCTTSCCHHHHHHHTTCH----------HHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCCCCc---cCCCCCCHHHHHHHcCCH----------HHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCH
Confidence 999999999999998 899999999999999999 9999999998 77889999999999999999999
Q ss_pred HHHHHHHhcCCccccccccCCCCchhhhhhcCCccc
Q 039483 237 LILKLILKIDRTAAKIADKDRKMTALHLVHGPKGCQ 272 (360)
Q Consensus 237 ~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~ 272 (360)
+++++|+++|+++ +.+|. .|.||||+|+..++.+
T Consensus 127 ~~v~~Ll~~g~~~-~~~~~-~g~t~l~~A~~~~~~~ 160 (169)
T 2y1l_E 127 EIVEVLLKNGADV-NAQDK-FGKTAFDISIDNGNED 160 (169)
T ss_dssp HHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHH
T ss_pred HHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHhCCHH
Confidence 9999999999888 66665 5555555554444443
No 65
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=2.1e-27 Score=200.52 Aligned_cols=165 Identities=16% Similarity=0.156 Sum_probs=138.0
Q ss_pred CCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHHHHh
Q 039483 25 IDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLIER 104 (360)
Q Consensus 25 ~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~ 104 (360)
..++||.|+..|+.+.++.|++.. +.++ +.+|..|.|| ||+|+..|+.+++++|+++
T Consensus 5 ~~~~l~~A~~~g~~~~v~~ll~~~---------------------~~~~-~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~ 61 (179)
T 3f6q_A 5 FMDDIFTQCREGNAVAVRLWLDNT---------------------ENDL-NQGDDHGFSP-LHWACREGRSAVVEMLIMR 61 (179)
T ss_dssp --CCHHHHHHHTCHHHHHHHHHCT---------------------TSCT-TCCCTTSCCH-HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcC---------------------cccc-cccCCCCCCH-HHHHHHcCcHHHHHHHHHc
Confidence 445689999999999999888721 4556 7788888999 9999999999999999999
Q ss_pred ccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHH
Q 039483 105 AKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQALH 184 (360)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh 184 (360)
|++++. .|..|. ||||+|+..|+ .+++++|+++|++++. +|..|.||||
T Consensus 62 g~~~~~------------------~~~~g~---------t~L~~A~~~~~-~~~v~~Ll~~g~~~~~---~d~~g~t~L~ 110 (179)
T 3f6q_A 62 GARINV------------------MNRGDD---------TPLHLAASHGH-RDIVQKLLQYKADINA---VNEHGNVPLH 110 (179)
T ss_dssp TCCTTC------------------CCTTCC---------CHHHHHHHTTC-HHHHHHHHHTTCCTTC---CCTTSCCHHH
T ss_pred CCCCCC------------------cCCCCC---------CHHHHHHHcCC-HHHHHHHHHcCCCCCc---cCCCCCCHHH
Confidence 988887 677775 77777788888 9999999999988888 8888999999
Q ss_pred HHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCcccccccc
Q 039483 185 AATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKIDRTAAKIADK 255 (360)
Q Consensus 185 ~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~ 255 (360)
+|+..++. +++++|++.+ .+++.+|..|.||||+|+..++.+++++|++.|+++ +..+.
T Consensus 111 ~A~~~~~~----------~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~-~~~~~ 169 (179)
T 3f6q_A 111 YACFWGQD----------QVAEDLVANG-ALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL-NRIPY 169 (179)
T ss_dssp HHHHTTCH----------HHHHHHHHTT-CCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCC-SCBCC
T ss_pred HHHHcCCH----------HHHHHHHHCC-CCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCc-ccCCc
Confidence 99999998 9999999888 778888889999999999888889999999998888 55544
No 66
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=1.3e-26 Score=190.79 Aligned_cols=153 Identities=16% Similarity=0.132 Sum_probs=140.0
Q ss_pred CHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHHHHhc
Q 039483 26 DPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLIERA 105 (360)
Q Consensus 26 ~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g 105 (360)
.++||.||..|+.+.++.|++. . +.++ +.+|..|.|| ||+ +..|+.+++++|+++|
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~---~------------------~~~~-~~~~~~g~t~-L~~-~~~~~~~~v~~Ll~~g 58 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHR---E------------------LVHP-DALNRFGKTA-LQV-MMFGSTAIALELLKQG 58 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT---T------------------CCCT-TCCCTTSCCH-HHH-SCTTCHHHHHHHHHTT
T ss_pred chHHHHHHHhCCHHHHHHHHHh---h------------------CcCc-cccCCCCCcH-HHH-HHcCCHHHHHHHHHCC
Confidence 4789999999999999999983 1 4466 8889999999 999 9999999999999999
Q ss_pred cccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHHH
Q 039483 106 KLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQALHA 185 (360)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~ 185 (360)
++++. +|..|. ||||+|+..|+ .+++++|+++|++++. +|..|.||||+
T Consensus 59 ~~~~~------------------~~~~g~---------t~L~~A~~~~~-~~~v~~Ll~~g~~~~~---~~~~g~t~L~~ 107 (156)
T 1bd8_A 59 ASPNV------------------QDTSGT---------SPVHDAARTGF-LDTLKVLVEHGADVNV---PDGTGALPIHL 107 (156)
T ss_dssp CCTTC------------------CCTTSC---------CHHHHHHHTTC-HHHHHHHHHTTCCSCC---CCTTSCCHHHH
T ss_pred CCCCC------------------cCCCCC---------CHHHHHHHcCc-HHHHHHHHHcCCCCCC---cCCCCCcHHHH
Confidence 99988 778875 78888888999 9999999999999999 99999999999
Q ss_pred HHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhc
Q 039483 186 ATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKI 245 (360)
Q Consensus 186 A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 245 (360)
|+..|+. +++++|++. .+++..|..|.||||+|+..|+.+++++|+++
T Consensus 108 A~~~~~~----------~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 108 AVQEGHT----------AVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHTCH----------HHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred HHHhChH----------HHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 9999999 999999988 77889999999999999999999999999864
No 67
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=1.8e-27 Score=198.08 Aligned_cols=160 Identities=19% Similarity=0.214 Sum_probs=125.4
Q ss_pred CCCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHH
Q 039483 22 QPQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVL 101 (360)
Q Consensus 22 ~~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~L 101 (360)
.+.+.++||.|++.|+.+.++.|++.. +..+ +..+..|.|| ||+|+..|+.+++++|
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~---------------------~~~~-~~~~~~g~t~-L~~A~~~~~~~~v~~L 61 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQ---------------------SVNC-RDIEGRQSTP-LHFAAGYNRVSVVEYL 61 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTT---------------------TTTC-CCTTTTCCCH-HHHHHHTTCHHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcC---------------------CCCc-cccccCCCCH-HHHHHHcChHHHHHHH
Confidence 344567888888888888888887621 3444 6677778888 8888888888888888
Q ss_pred HHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCc
Q 039483 102 IERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQ 181 (360)
Q Consensus 102 l~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t 181 (360)
+++|++++. .|..|. ||||+|+..|+ .+++++|+++|++++. +|..|.|
T Consensus 62 l~~g~~~~~------------------~~~~g~---------t~L~~A~~~~~-~~~v~~Ll~~g~~~~~---~~~~g~t 110 (165)
T 3twr_A 62 LQHGADVHA------------------KDKGGL---------VPLHNACSYGH-YEVAELLVKHGAVVNV---ADLWKFT 110 (165)
T ss_dssp HHTTCCTTC------------------CCTTSC---------CHHHHHHHTTC-HHHHHHHHHTTCCTTC---CCTTCCC
T ss_pred HhcCCCCCc------------------cCCCCC---------CHHHHHHHcCc-HHHHHHHHhCCCCCCC---cCCCCCC
Confidence 888888777 667764 67777777888 8888888888888888 8888888
Q ss_pred HHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 039483 182 ALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKIDR 247 (360)
Q Consensus 182 ~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~ 247 (360)
|||+|+..|+. +++++|++++ .+++.+|..|+||||+|+. ++.+++++|+++|+
T Consensus 111 ~L~~A~~~~~~----------~~v~~Ll~~g-a~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 111 PLHEAAAKGKY----------EICKLLLQHG-ADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp HHHHHHHTTCH----------HHHHHHHHTT-CCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred HHHHHHHcCCH----------HHHHHHHHcC-CCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 88888888888 8888888887 7788888888888888666 78888888887774
No 68
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=1.6e-26 Score=190.00 Aligned_cols=149 Identities=22% Similarity=0.242 Sum_probs=109.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHHHHhcc
Q 039483 27 PNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLIERAK 106 (360)
Q Consensus 27 ~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g~ 106 (360)
++||.|+..|+.+.++.|++. +..+ + .+..|.|| ||+|+..|+.+++++|++.|+
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~----------------------g~~~-~-~~~~g~t~-L~~A~~~~~~~~v~~Ll~~g~ 58 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMAN----------------------GAPF-T-TDWLGTSP-LHLAAQYGHFSTTEVLLRAGV 58 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHH----------------------TCCC-C-CCTTCCCH-HHHHHHHTCHHHHHHHHTTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHc----------------------CCCC-C-cCCCCCCH-HHHHHHcCCHHHHHHHHHcCC
Confidence 567777777777777777763 2222 2 46667777 777777777777777777777
Q ss_pred ccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHHHH
Q 039483 107 LVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQALHAA 186 (360)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A 186 (360)
+++. +|..|. ||||+|+..|+ .+++++|+++|++++. +|..|.||||+|
T Consensus 59 ~~~~------------------~~~~g~---------t~L~~A~~~~~-~~~v~~Ll~~g~~~~~---~~~~g~t~L~~A 107 (153)
T 1awc_B 59 SRDA------------------RTKVDR---------TPLHMAASEGH-ANIVEVLLKHGADVNA---KDMLKMTALHWA 107 (153)
T ss_dssp CTTC------------------CCTTCC---------CHHHHHHHHTC-HHHHHHHHTTTCCTTC---CCTTSCCHHHHH
T ss_pred CCCC------------------CCCCCC---------CHHHHHHHcCh-HHHHHHHHHcCCCCCC---CCCCCCCHHHHH
Confidence 7766 566664 66666677777 7777777777777777 777777777777
Q ss_pred HhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHH
Q 039483 187 TMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLI 242 (360)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~L 242 (360)
+..|+. +++++|++.+ .+++.+|..|.||||+|+..|+.+++++|
T Consensus 108 ~~~~~~----------~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 108 TEHNHQ----------EVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHTTCH----------HHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHcCCH----------HHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 777777 7777777776 66777777777777777777777777765
No 69
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.2e-28 Score=217.03 Aligned_cols=184 Identities=14% Similarity=0.025 Sum_probs=162.8
Q ss_pred CCCCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHH
Q 039483 21 SQPQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSV 100 (360)
Q Consensus 21 ~~~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~ 100 (360)
......++||.||..|+.++++.|++. +.++ +.+|..|.|| ||+||..|+.+++++
T Consensus 17 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~----------------------g~~~-~~~d~~g~tp-Lh~A~~~g~~~~v~~ 72 (229)
T 2vge_A 17 ARLNPLVLLLDAALTGELEVVQQAVKE----------------------MNDP-SQPNEEGITA-LHNAICGANYSIVDF 72 (229)
T ss_dssp TTSCHHHHHHHHHHHTCHHHHHHHHHH----------------------SSCT-TCCCTTSCCH-HHHHHHTTCHHHHHH
T ss_pred cccchhHHHHHHHHcCCHHHHHHHHhc----------------------CCCC-CCCCCCCCCH-HHHHHHcCCHHHHHH
Confidence 344566899999999999999999984 6677 8899999999 999999999999999
Q ss_pred HHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCC-CCC
Q 039483 101 LIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKA-PME 179 (360)
Q Consensus 101 Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d-~~g 179 (360)
|++.|++++. +|..|. ||||+|+..|+ .+++++|++.|++++. ++ ..|
T Consensus 73 Ll~~ga~~n~------------------~d~~g~---------tpLh~A~~~g~-~~~v~~Ll~~ga~~~~---~~~~~g 121 (229)
T 2vge_A 73 LITAGANVNS------------------PDSHGW---------TPLHCAASCND-TVICMALVQHGAAIFA---TTLSDG 121 (229)
T ss_dssp HHHTTCCTTC------------------CCTTCC---------CHHHHHHHTTC-HHHHHHHHTTTCCTTC---CCSSTT
T ss_pred HHHCCCCCCC------------------CCCCCC---------CHHHHHHHcCC-HHHHHHHHHcCCCccc---ccCCCC
Confidence 9999999998 788885 88888899999 9999999999999998 76 599
Q ss_pred CcHHHHH--HhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCc--ccccccc
Q 039483 180 RQALHAA--TMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKIDRT--AAKIADK 255 (360)
Q Consensus 180 ~t~Lh~A--~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~--~~~~~d~ 255 (360)
.||||+| +..|+. +++++|++.+ .+++..|..|.||++.++..+. .++|++.|++ + +.+|.
T Consensus 122 ~tpL~~A~a~~~~~~----------~~v~~Ll~~g-a~~~~~~~~~~~~l~~~~~~~~---~~~ll~~ga~~~~-~~~d~ 186 (229)
T 2vge_A 122 ATAFEKCDPYREGYA----------DCATYLADVE-QSMGLMNSGAVYALWDYSAEFG---DELSFREGESVTV-LRRDG 186 (229)
T ss_dssp CCTGGGCCTTSTTHH----------HHHHHHHHHH-HHTTTSGGGEEEESSCBCCSST---TBCCBCTTCEEEE-EESSC
T ss_pred CCHHHHHHHHhcChH----------HHHHHHHHcC-CCcccccCCchHHHHHHhhccc---cccCccccccccc-cccCC
Confidence 9999999 999999 9999999999 7899999999999997655543 3677888988 5 77888
Q ss_pred CCCCchhhhhhcCCccc-ccc
Q 039483 256 DRKMTALHLVHGPKGCQ-NNM 275 (360)
Q Consensus 256 ~~g~tpLh~A~~~~~~~-~~~ 275 (360)
.|+||||+|+..++.+ ++.
T Consensus 187 -~G~TpL~~A~~~g~~~~v~~ 206 (229)
T 2vge_A 187 -PEETDWWWAALHGQEGYVPR 206 (229)
T ss_dssp -TTCSSEEEEEETTEEEEEEG
T ss_pred -CcccHHHHHHHcCCcceeeh
Confidence 9999999999999988 443
No 70
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=3.8e-27 Score=193.71 Aligned_cols=145 Identities=21% Similarity=0.244 Sum_probs=121.0
Q ss_pred CChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHH
Q 039483 82 DTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVA 161 (360)
Q Consensus 82 ~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~ 161 (360)
.|| ||.|+..|+.+++++|+++|++++ .|..|. ||||+|+..|+ .+++++
T Consensus 3 ~~~-L~~A~~~g~~~~v~~Ll~~g~~~~-------------------~~~~g~---------t~L~~A~~~~~-~~~v~~ 52 (153)
T 1awc_B 3 GKK-LLEAARAGQDDEVRILMANGAPFT-------------------TDWLGT---------SPLHLAAQYGH-FSTTEV 52 (153)
T ss_dssp HHH-HHHHHHHTCHHHHHHHHHHTCCCC-------------------CCTTCC---------CHHHHHHHHTC-HHHHHH
T ss_pred cHH-HHHHHHcCCHHHHHHHHHcCCCCC-------------------cCCCCC---------CHHHHHHHcCC-HHHHHH
Confidence 478 999999999999999999988654 355564 78888888899 999999
Q ss_pred HHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHH
Q 039483 162 ILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKL 241 (360)
Q Consensus 162 Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~ 241 (360)
|++.|++++. ++..|.||||+|+..|+. +++++|++.+ .+++.+|..|+||||+|+..|+.+++++
T Consensus 53 Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~----------~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 118 (153)
T 1awc_B 53 LLRAGVSRDA---RTKVDRTPLHMAASEGHA----------NIVEVLLKHG-ADVNAKDMLKMTALHWATEHNHQEVVEL 118 (153)
T ss_dssp HHTTTCCTTC---CCTTCCCHHHHHHHHTCH----------HHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHcCCCCCC---CCCCCCCHHHHHHHcChH----------HHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 9999999988 888999999999999999 9999999988 7788889999999999999999999999
Q ss_pred HHhcCCccccccccCCCCchhhhhhcCCccc
Q 039483 242 ILKIDRTAAKIADKDRKMTALHLVHGPKGCQ 272 (360)
Q Consensus 242 Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~ 272 (360)
|+++|+++ +.++. .|.||||+|+..++.+
T Consensus 119 Ll~~ga~~-~~~~~-~g~t~l~~A~~~~~~~ 147 (153)
T 1awc_B 119 LIKYGADV-HTQSK-FCKTAFDISIDNGNED 147 (153)
T ss_dssp HHHTTCCT-TCCCT-TSCCHHHHHHHTTCHH
T ss_pred HHHcCCCc-cccCC-CCCCHHHHHHHcCCHH
Confidence 99999888 66666 5555555555554444
No 71
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=2.2e-27 Score=196.65 Aligned_cols=155 Identities=16% Similarity=0.109 Sum_probs=117.5
Q ss_pred CCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHH
Q 039483 81 GDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVV 160 (360)
Q Consensus 81 g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~ 160 (360)
..|| ||.|+..|+.+++++|+++|++++. .|..|. ||||+|+. |+ .++++
T Consensus 5 ~~~~-L~~A~~~g~~~~v~~Ll~~~~~~~~------------------~~~~g~---------t~L~~A~~-~~-~~~v~ 54 (162)
T 1ihb_A 5 WGNE-LASAAARGDLEQLTSLLQNNVNVNA------------------QNGFGR---------TALQVMKL-GN-PEIAR 54 (162)
T ss_dssp CHHH-HHHHHHHTCHHHHHHHTTSCCCTTC------------------CCTTSC---------CHHHHCCS-SC-HHHHH
T ss_pred HhhH-HHHHHHcCCHHHHHHHHhCCCCccc------------------cCccCc---------cHHHHHHc-Cc-HHHHH
Confidence 4577 8888888888888888888887776 666765 56666666 77 88888
Q ss_pred HHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHH
Q 039483 161 AILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILK 240 (360)
Q Consensus 161 ~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~ 240 (360)
+|+++|++++. ++..|.||||+|+..|+. +++++|++.+ .+++.+|..|+||||+|+..|+.++++
T Consensus 55 ~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~----------~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~ 120 (162)
T 1ihb_A 55 RLLLRGANPDL---KDRTGFAVIHDAARAGFL----------DTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVE 120 (162)
T ss_dssp HHHHTTCCTTC---CCTTSCCHHHHHHHHTCH----------HHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHHcCCCCCC---CCCCCCCHHHHHHHcCCH----------HHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 88888888887 888888888888888888 8888888887 777888888888888888888888888
Q ss_pred HHHhcCCccccccccCCCCchhhhhhcCCcccccccccccCccCCCCCCcHHHHHHHcCCHHHHHHHhhh
Q 039483 241 LILKIDRTAAKIADKDRKMTALHLVHGPKGCQNNMLASSLMDEGDAKGNTTVHFFAAVHRKEIFDDLSGR 310 (360)
Q Consensus 241 ~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~~~~L~~~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~~~ 310 (360)
+|+++|++..+.+ |..|+||||+|++.|+.++++.|+++
T Consensus 121 ~Ll~~g~~~~~~~-------------------------------~~~g~t~l~~A~~~~~~~~~~~Ll~~ 159 (162)
T 1ihb_A 121 FLVKHTASNVGHR-------------------------------NHKGDTACDLARLYGRNEVVSLMQAN 159 (162)
T ss_dssp HHHHHSCCCTTCC-------------------------------CTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHccCCCCCCc-------------------------------CCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence 8888887632444 44556666666666666666665543
No 72
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=8.4e-27 Score=196.79 Aligned_cols=164 Identities=14% Similarity=0.125 Sum_probs=143.9
Q ss_pred CCCCChHHHHHHhcCCHHHHHHHHHh-ccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHH
Q 039483 79 AKGDTRSRHVAAKFDHCDIVSVLIER-AKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSH 157 (360)
Q Consensus 79 ~~g~tp~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~ 157 (360)
.++.+| ||.||..|+.+++++|++. +.+++. .|..|. ||||+|+..|+ .+
T Consensus 3 ~~~~~~-l~~A~~~g~~~~v~~ll~~~~~~~~~------------------~~~~g~---------t~L~~A~~~~~-~~ 53 (179)
T 3f6q_A 3 PEFMDD-IFTQCREGNAVAVRLWLDNTENDLNQ------------------GDDHGF---------SPLHWACREGR-SA 53 (179)
T ss_dssp ----CC-HHHHHHHTCHHHHHHHHHCTTSCTTC------------------CCTTSC---------CHHHHHHHTTC-HH
T ss_pred HHHHHH-HHHHHHcCCHHHHHHHHhcCcccccc------------------cCCCCC---------CHHHHHHHcCc-HH
Confidence 356799 9999999999999999998 455666 777875 88888899999 99
Q ss_pred HHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHH
Q 039483 158 TVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYL 237 (360)
Q Consensus 158 ~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~ 237 (360)
++++|++.|++++. ++..|.||||+|+..|+. +++++|++.+ .+++..|..|+||||+|+..|+.+
T Consensus 54 ~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~----------~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~ 119 (179)
T 3f6q_A 54 VVEMLIMRGARINV---MNRGDDTPLHLAASHGHR----------DIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQ 119 (179)
T ss_dssp HHHHHHHTTCCTTC---CCTTCCCHHHHHHHTTCH----------HHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHcCCCCCC---cCCCCCCHHHHHHHcCCH----------HHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHH
Confidence 99999999999999 999999999999999999 9999999998 889999999999999999999999
Q ss_pred HHHHHHhcCCccccccccCCCCchhhhhhcCCccc-cccccc--ccCccCCCC
Q 039483 238 ILKLILKIDRTAAKIADKDRKMTALHLVHGPKGCQ-NNMLAS--SLMDEGDAK 287 (360)
Q Consensus 238 ~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~-~~~L~~--~~~~~~d~~ 287 (360)
++++|+++|+++ +.+|. .|.||||+|+..++.+ +++|++ ++++..+..
T Consensus 120 ~v~~Ll~~ga~~-~~~~~-~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~ 170 (179)
T 3f6q_A 120 VAEDLVANGALV-SICNK-YGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYK 170 (179)
T ss_dssp HHHHHHHTTCCS-SBCCT-TSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCC
T ss_pred HHHHHHHCCCCc-chhcc-CCCCcHHHHHHHHHHHHHHHHHHhhcCcccCCcc
Confidence 999999999999 99999 9999999998877777 777764 666555443
No 73
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.94 E-value=1.7e-26 Score=205.91 Aligned_cols=187 Identities=16% Similarity=0.075 Sum_probs=148.1
Q ss_pred CCCCCCHHHHHHHHc---CChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHH
Q 039483 21 SQPQIDPNLFKVAAA---GNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDI 97 (360)
Q Consensus 21 ~~~~~~~~L~~Aa~~---G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~ 97 (360)
....+.+|||.|+.. |+.++++.|++.+.+...... +. .... ...|..|.|| ||+|+..|+.++
T Consensus 39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~--------~~---~~~~-~~~d~~g~t~-L~~A~~~g~~~~ 105 (256)
T 2etb_A 39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP--------LV---NAQC-TDEFYQGHSA-LHIAIEKRSLQC 105 (256)
T ss_dssp BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC--------GG---GCCC-CSTTTTTCCH-HHHHHHTTCHHH
T ss_pred CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh--------hc---cccc-ccccccCCCH-HHHHHHcCCHHH
Confidence 356678999999999 999999999995443310000 00 1112 3456789999 999999999999
Q ss_pred HHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHh---hCCCCCcccc
Q 039483 98 VSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILK---SCTSVSHIYM 174 (360)
Q Consensus 98 v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~---~g~~~~~~~~ 174 (360)
+++|+++|++++..|.....+. ..+..|..|. ||||+|+..|+ .+++++|++ +|++++.
T Consensus 106 v~~Ll~~ga~~~~~~~~~~~~~-----~~~~~~~~g~---------tpL~~A~~~~~-~~~v~~Ll~~~~~ga~~n~--- 167 (256)
T 2etb_A 106 VKLLVENGADVHLRACGRFFQK-----HQGTCFYFGE---------LPLSLAACTKQ-WDVVTYLLENPHQPASLEA--- 167 (256)
T ss_dssp HHHHHHTTCCTTCCCCSGGGSC-----CSSSCCCSCS---------SHHHHHHHTTC-HHHHHHHHHCSSCCCCTTC---
T ss_pred HHHHHHcCCCCCcccccccccc-----cccccccCCC---------CHHHHHHHcCC-HHHHHHHHhccccCCCcCc---
Confidence 9999999999988432221110 0000112264 88888899999 999999999 9999999
Q ss_pred CCCCCCcHHHHHHh--cCCcccccccCChHH-------HHHHHHhcCcccc-------ccccCCCChHHHHHHHcCCHHH
Q 039483 175 KAPMERQALHAATM--HIDLCKFNHTLSNDC-------AVQQLFEGKKSMI-------KGIDQCWWTPIHYAAYHRNYLI 238 (360)
Q Consensus 175 ~d~~g~t~Lh~A~~--~~~~~~~~~~~~~~~-------~~~~Ll~~~~~~i-------~~~d~~g~t~Lh~A~~~~~~~~ 238 (360)
+|..|+||||+|+. .++. + ++++|++.+ +++ +.+|..|+||||+|+..|+.++
T Consensus 168 ~d~~g~TpLh~A~~~~~~~~----------~~~~~~~~iv~~Ll~~g-a~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~ 236 (256)
T 2etb_A 168 TDSLGNTVLHALVMIADNSP----------ENSALVIHMYDGLLQMG-ARLCPTVQLEEISNHQGLTPLKLAAKEGKIEI 236 (256)
T ss_dssp CCTTSCCHHHHHHHHCCSCH----------HHHHHHHHHHHHHHHHH-HHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred cCCCCCCHHHHHHHcccCCc----------hhhHHHHHHHHHHHHcC-CCcccccccccccCCCCCCHHHHHHHhCCHHH
Confidence 99999999999999 6777 7 999999998 778 8899999999999999999999
Q ss_pred HHHHHhcCCcc
Q 039483 239 LKLILKIDRTA 249 (360)
Q Consensus 239 v~~Ll~~g~~~ 249 (360)
+++|+++|.+.
T Consensus 237 v~~Ll~~g~~~ 247 (256)
T 2etb_A 237 FRHILQREFSG 247 (256)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhCCCCC
Confidence 99999998765
No 74
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=1.1e-27 Score=211.96 Aligned_cols=177 Identities=17% Similarity=0.046 Sum_probs=127.7
Q ss_pred CCCCCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHH
Q 039483 78 TAKGDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSH 157 (360)
Q Consensus 78 ~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~ 157 (360)
+..|.|| ||.|++.|+.+.++.|+++|++++. . ..| .||||.|+..|+ .+
T Consensus 2 ~~~g~t~-L~~a~~~~~~~~~~~ll~~g~~~~~------------------~-~~~---------~t~L~~A~~~g~-~~ 51 (239)
T 1ycs_B 2 EITGQVS-LPPGKRTNLRKTGSERIAHGMRVKF------------------N-PLP---------LALLLDSSLEGE-FD 51 (239)
T ss_dssp -------------------------------------------------------C---------HHHHHHHHHHTC-HH
T ss_pred Ccccccc-CchhhhhhhHHHHHHHhccCCCccc------------------C-chh---------hHHHHHHHHcCC-HH
Confidence 4569999 9999999999999999999998875 2 333 488999999999 99
Q ss_pred HHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHH
Q 039483 158 TVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYL 237 (360)
Q Consensus 158 ~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~ 237 (360)
++++|++.|++++. +|..|.||||+|+..|+. +++++|++++ .+++.+|..|+||||+|+..|+.+
T Consensus 52 ~v~~Ll~~g~~~~~---~d~~g~t~L~~A~~~g~~----------~~v~~Ll~~g-a~~~~~d~~g~tpL~~A~~~~~~~ 117 (239)
T 1ycs_B 52 LVQRIIYEVDDPSL---PNDEGITALHNAVCAGHT----------EIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNVQ 117 (239)
T ss_dssp HHHHHTSTTSSCCC---CCTTSCCHHHHHHHHTCH----------HHHHHHHHHT-CCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred HHHHHHHcCCCCCC---cCCCCCCHHHHHHHcCCH----------HHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHH
Confidence 99999999999999 999999999999999999 9999999998 889999999999999999999999
Q ss_pred HHHHHHhcCCccccccccCCCC-chhhhh--hcCCccc-cccccc--ccCccC---------CCCCCcHHHHHHHcCC
Q 039483 238 ILKLILKIDRTAAKIADKDRKM-TALHLV--HGPKGCQ-NNMLAS--SLMDEG---------DAKGNTTVHFFAAVHR 300 (360)
Q Consensus 238 ~v~~Ll~~g~~~~~~~d~~~g~-tpLh~A--~~~~~~~-~~~L~~--~~~~~~---------d~~g~Tpl~~A~~~~~ 300 (360)
++++|+++|+++ +.++. .|. ||||+| +..++.+ +++|+. ++++.. +..|.++++++.+.|.
T Consensus 118 ~v~~Ll~~ga~~-~~~~~-~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 118 VCKFLVESGAAV-FAMTY-SDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHHHHTTCCT-TCCCS-SSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHHHHHcCCCc-ceecC-CCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 999999999999 99988 666 999999 6677777 888874 555544 6678999998888775
No 75
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.94 E-value=1.6e-26 Score=206.50 Aligned_cols=186 Identities=16% Similarity=0.079 Sum_probs=147.1
Q ss_pred CCCCHHHHHHH---HcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHH
Q 039483 23 PQIDPNLFKVA---AAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVS 99 (360)
Q Consensus 23 ~~~~~~L~~Aa---~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~ 99 (360)
..+.+|||.|+ ..|+.++++.|++...+..... . +. ...+ ...|..|.|| ||+||..|+.++|+
T Consensus 44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~-----~---~~---~~~~-~~~d~~g~t~-L~~A~~~g~~~~v~ 110 (260)
T 3jxi_A 44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR-----E---FI---NSPF-RDVYYRGQTA-LHIAIERRCKHYVE 110 (260)
T ss_dssp TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH-----H---HH---TCCB-CCSSEESBCH-HHHHHHTTCHHHHH
T ss_pred CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH-----h---hh---cccc-cccccCCCCH-HHHHHHcCCHHHHH
Confidence 56889999999 7799999999999543321000 0 00 2334 5566789999 99999999999999
Q ss_pred HHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHh---hCCCCCccccCC
Q 039483 100 VLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILK---SCTSVSHIYMKA 176 (360)
Q Consensus 100 ~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~---~g~~~~~~~~~d 176 (360)
+|+++|++++..+...... .......+..|. ||||+|+..|+ .+++++|++ .|++++. +|
T Consensus 111 ~Ll~~ga~~~~~~~~~~~~----~~~~~~~~~~g~---------tpL~~A~~~g~-~~~v~~Ll~~~~~ga~~~~---~d 173 (260)
T 3jxi_A 111 LLVEKGADVHAQARGRFFQ----PKDEGGYFYFGE---------LPLSLAACTNQ-PHIVHYLTENGHKQADLRR---QD 173 (260)
T ss_dssp HHHHTTCCTTCCCEECCCS----SSCCCCSCCSCS---------SHHHHHHHTTC-HHHHHHHHHCSSCCCCTTC---CC
T ss_pred HHHhCCCCcCccccccccC----cccccccccCCC---------CHHHHHHHcCC-HHHHHHHHhccccCCCCcc---cC
Confidence 9999999999843211000 000000114564 88888999999 999999999 9999999 99
Q ss_pred CCCCcHHHHHHhcCC---------cccccccCChHHHHHHHHhcCcccc-------ccccCCCChHHHHHHHcCCHHHHH
Q 039483 177 PMERQALHAATMHID---------LCKFNHTLSNDCAVQQLFEGKKSMI-------KGIDQCWWTPIHYAAYHRNYLILK 240 (360)
Q Consensus 177 ~~g~t~Lh~A~~~~~---------~~~~~~~~~~~~~~~~Ll~~~~~~i-------~~~d~~g~t~Lh~A~~~~~~~~v~ 240 (360)
..|+||||+|+..++ . +++++|++.+ +++ +..|..|+||||+|+..|+.++++
T Consensus 174 ~~g~TpLh~A~~~~~~~~~~~~~~~----------~~v~~Ll~~g-a~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~ 242 (260)
T 3jxi_A 174 SRGNTVLHALVAIADNTRENTKFVT----------KMYDLLLIKC-AKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQ 242 (260)
T ss_dssp TTSCCHHHHHHHHCCSSHHHHHHHH----------HHHHHHHHHH-HHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred CCCCcHHHHHHHhccCchhHHHHHH----------HHHHHHHHhC-cccccccchhhcccCCCCCHHHHHHHcCCHHHHH
Confidence 999999999998887 6 8999999998 767 679999999999999999999999
Q ss_pred HHHhcCCcc
Q 039483 241 LILKIDRTA 249 (360)
Q Consensus 241 ~Ll~~g~~~ 249 (360)
+|+++|++.
T Consensus 243 ~Ll~~g~~~ 251 (260)
T 3jxi_A 243 HIIRREIAD 251 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhCCCc
Confidence 999999766
No 76
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=9.2e-27 Score=193.70 Aligned_cols=155 Identities=23% Similarity=0.232 Sum_probs=136.9
Q ss_pred CCCCCCChHHHHHHhcCCHHHHHHHHHhc-cccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCc
Q 039483 77 VTAKGDTRSRHVAAKFDHCDIVSVLIERA-KLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHS 155 (360)
Q Consensus 77 ~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~ 155 (360)
.|.+|.|| ||.|+..|+.++++.|++.+ .+++. .+..|. ||||+|+..|+
T Consensus 4 ~~~~~~~~-l~~A~~~g~~~~v~~ll~~~~~~~~~------------------~~~~g~---------t~L~~A~~~~~- 54 (165)
T 3twr_A 4 GNSEADRQ-LLEAAKAGDVETVKKLCTVQSVNCRD------------------IEGRQS---------TPLHFAAGYNR- 54 (165)
T ss_dssp --CHHHHH-HHHHHHHTCHHHHHHHCCTTTTTCCC------------------TTTTCC---------CHHHHHHHTTC-
T ss_pred CcchhhHH-HHHHHHhCCHHHHHHHHHcCCCCccc------------------cccCCC---------CHHHHHHHcCh-
Confidence 46778899 99999999999999999854 34444 666664 88888899999
Q ss_pred HHHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCC
Q 039483 156 SHTVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRN 235 (360)
Q Consensus 156 ~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~ 235 (360)
.+++++|+++|++++. +|..|.||||+|+..++. +++++|++.+ .+++..|..|+||||+|+..|+
T Consensus 55 ~~~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~----------~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~ 120 (165)
T 3twr_A 55 VSVVEYLLQHGADVHA---KDKGGLVPLHNACSYGHY----------EVAELLVKHG-AVVNVADLWKFTPLHEAAAKGK 120 (165)
T ss_dssp HHHHHHHHHTTCCTTC---CCTTSCCHHHHHHHTTCH----------HHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCCCc---cCCCCCCHHHHHHHcCcH----------HHHHHHHhCC-CCCCCcCCCCCCHHHHHHHcCC
Confidence 9999999999999999 999999999999999999 9999999998 8899999999999999999999
Q ss_pred HHHHHHHHhcCCccccccccCCCCchhhhhhcCCccc-ccccc
Q 039483 236 YLILKLILKIDRTAAKIADKDRKMTALHLVHGPKGCQ-NNMLA 277 (360)
Q Consensus 236 ~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~-~~~L~ 277 (360)
.+++++|+++|+++ +.+|. .|+||||+|.. ++.+ +++|+
T Consensus 121 ~~~v~~Ll~~ga~~-~~~~~-~g~t~l~~a~~-~~~~i~~~L~ 160 (165)
T 3twr_A 121 YEICKLLLQHGADP-TKKNR-DGNTPLDLVKD-GDTDIQDLLR 160 (165)
T ss_dssp HHHHHHHHHTTCCT-TCCCT-TSCCTGGGSCT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCCC-cccCC-CCCChhHhHhc-CChHHHHHHh
Confidence 99999999999999 99999 99999999866 5555 65554
No 77
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=2.6e-26 Score=189.05 Aligned_cols=150 Identities=19% Similarity=0.171 Sum_probs=141.0
Q ss_pred cCHHHHHHhcCCcHHHHHHHHhh-CCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccC
Q 039483 143 KIPLCMAAEYEHSSHTVVAILKS-CTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQ 221 (360)
Q Consensus 143 ~t~L~~A~~~g~~~~~~~~Ll~~-g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~ 221 (360)
.||||.|+..|+ .++++.|++. +.+++. ++..|.||||+ +..|+. +++++|++.+ .+++..|.
T Consensus 3 ~~~L~~A~~~g~-~~~v~~ll~~~~~~~~~---~~~~g~t~L~~-~~~~~~----------~~v~~Ll~~g-~~~~~~~~ 66 (156)
T 1bd8_A 3 GDRLSGAAARGD-VQEVRRLLHRELVHPDA---LNRFGKTALQV-MMFGST----------AIALELLKQG-ASPNVQDT 66 (156)
T ss_dssp HHHHHHHHHHTC-HHHHHHHHHTTCCCTTC---CCTTSCCHHHH-SCTTCH----------HHHHHHHHTT-CCTTCCCT
T ss_pred chHHHHHHHhCC-HHHHHHHHHhhCcCccc---cCCCCCcHHHH-HHcCCH----------HHHHHHHHCC-CCCCCcCC
Confidence 389999999999 9999999998 347888 99999999999 999999 9999999998 88999999
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCccccccccCCCCchhhhhhcCCccc-cccccc-ccCccCCCCCCcHHHHHHHcC
Q 039483 222 CWWTPIHYAAYHRNYLILKLILKIDRTAAKIADKDRKMTALHLVHGPKGCQ-NNMLAS-SLMDEGDAKGNTTVHFFAAVH 299 (360)
Q Consensus 222 ~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~-~~~L~~-~~~~~~d~~g~Tpl~~A~~~~ 299 (360)
.|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..++.+ +++|+. ++++.+|..|+||||+|++.|
T Consensus 67 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~g~t~l~~A~~~~ 144 (156)
T 1bd8_A 67 SGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDG-TGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRG 144 (156)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCT-TSCCHHHHHHHHTCHHHHHHHHTTSCTTCCCTTSCCHHHHHHHSC
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCC-CCCcHHHHHHHhChHHHHHHHHhccCCCCcCCCCCCHHHHHHHcC
Confidence 9999999999999999999999999999 99999 9999999999999988 888875 888899999999999999999
Q ss_pred CHHHHHHHhhh
Q 039483 300 RKEIFDDLSGR 310 (360)
Q Consensus 300 ~~~i~~~l~~~ 310 (360)
+.++++.|.++
T Consensus 145 ~~~~v~~Ll~~ 155 (156)
T 1bd8_A 145 AQDLVDILQGH 155 (156)
T ss_dssp CHHHHHHHHTT
T ss_pred cHHHHHHHHhh
Confidence 99999999875
No 78
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=8.6e-27 Score=206.21 Aligned_cols=204 Identities=11% Similarity=0.016 Sum_probs=142.6
Q ss_pred CCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHHH
Q 039483 23 PQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLI 102 (360)
Q Consensus 23 ~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll 102 (360)
.++.+|||.|+..|+.+.++.|++. +..+ + .+..|.|| ||.|+..|+.+++++|+
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~----------------------g~~~-~-~~~~~~t~-L~~A~~~g~~~~v~~Ll 57 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAH----------------------GMRV-K-FNPLPLAL-LLDSSLEGEFDLVQRII 57 (239)
T ss_dssp ----------------------------------------------------------CHHH-HHHHHHHTCHHHHHHHT
T ss_pred ccccccCchhhhhhhHHHHHHHhcc----------------------CCCc-c-cCchhhHH-HHHHHHcCCHHHHHHHH
Confidence 3467999999999999999999985 3333 3 23678999 99999999999999999
Q ss_pred HhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcH
Q 039483 103 ERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQA 182 (360)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~ 182 (360)
+.|++++. +|..|. ||||+|+..|+ .+++++|+++|++++. +|..|.||
T Consensus 58 ~~g~~~~~------------------~d~~g~---------t~L~~A~~~g~-~~~v~~Ll~~ga~~~~---~d~~g~tp 106 (239)
T 1ycs_B 58 YEVDDPSL------------------PNDEGI---------TALHNAVCAGH-TEIVKFLVQFGVNVNA---ADSDGWTP 106 (239)
T ss_dssp STTSSCCC------------------CCTTSC---------CHHHHHHHHTC-HHHHHHHHHHTCCTTC---CCTTCCCH
T ss_pred HcCCCCCC------------------cCCCCC---------CHHHHHHHcCC-HHHHHHHHHcCCCCCc---cCCCCCCH
Confidence 99999988 788885 88888899999 9999999999999999 99999999
Q ss_pred HHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCC-hHHHHH--HHcCCHHHHHHHHhcCCcccccc------
Q 039483 183 LHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWW-TPIHYA--AYHRNYLILKLILKIDRTAAKIA------ 253 (360)
Q Consensus 183 Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~-t~Lh~A--~~~~~~~~v~~Ll~~g~~~~~~~------ 253 (360)
||+|+..|+. +++++|++++ .+++..+..|. ||||+| +..|+.+++++|++.|+++ +..
T Consensus 107 L~~A~~~~~~----------~~v~~Ll~~g-a~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~-~~~~~~~~~ 174 (239)
T 1ycs_B 107 LHCAASCNNV----------QVCKFLVESG-AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM-GIMNKGVIY 174 (239)
T ss_dssp HHHHHHTTCH----------HHHHHHHHTT-CCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHT-TTTGGGEEE
T ss_pred HHHHHHcCCH----------HHHHHHHHcC-CCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcc-cccccceEE
Confidence 9999999999 9999999999 88898888777 999999 7889999999999999887 665
Q ss_pred ---ccCCCCchhhhhhcCCccccccccccc--------CccCCCCCCcHHHHHH
Q 039483 254 ---DKDRKMTALHLVHGPKGCQNNMLASSL--------MDEGDAKGNTTVHFFA 296 (360)
Q Consensus 254 ---d~~~g~tpLh~A~~~~~~~~~~L~~~~--------~~~~d~~g~Tpl~~A~ 296 (360)
+. .+.++++++...+.. ++.|...+ ....+..|.+|.++..
T Consensus 175 al~d~-~~~~~~eLa~~~G~~-i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~ 226 (239)
T 1ycs_B 175 ALWDY-EPQNDDELPMKEGDC-MTIIHREDEDEIEWWWARLNDKEGYVPRNLLG 226 (239)
T ss_dssp ESSCB-CCSSTTBCCBCSSCE-EEECCCCTTSCSSEEEEEETTEEEEEEGGGEE
T ss_pred EEecc-CCCCCCcccccCCCE-EEEEEecCCCCCCEEEEEECCcEEEeehHHee
Confidence 44 678888887665543 22332211 1244556777776653
No 79
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=1.5e-25 Score=180.59 Aligned_cols=134 Identities=13% Similarity=0.081 Sum_probs=125.0
Q ss_pred cccccCCCCCCCCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHH
Q 039483 70 RQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMA 149 (360)
Q Consensus 70 ~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A 149 (360)
+..+ +.+|..|.|| ||+|+..|+.+++++|+++|++++. +|..|. ||||+|
T Consensus 2 ~~~~-~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~---------t~L~~A 52 (136)
T 1d9s_A 2 SPGI-HMLGGSSDAG-LATAAARGQVETVRQLLEAGADPNA------------------LNRFGR---------RPIQVM 52 (136)
T ss_dssp CCCC-SCCCCCCSCH-HHHHHHTTCHHHHHHHHHTTCCTTC------------------CCTTCC---------TTTTTS
T ss_pred CCCc-cCCCCCCccH-HHHHHHcCCHHHHHHHHHcCCCcCC------------------cCCCCC---------CHHHHH
Confidence 4567 8899999999 9999999999999999999999988 788886 677777
Q ss_pred HhcCCcHHHHHHHHhhCCCCCccccCCCC-CCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHH
Q 039483 150 AEYEHSSHTVVAILKSCTSVSHIYMKAPM-ERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIH 228 (360)
Q Consensus 150 ~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~-g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh 228 (360)
+. |+ .+++++|+++|++++. +|.. |.||||+|+..|+. +++++|++.+ .+++.+|..|+||||
T Consensus 53 ~~-~~-~~~v~~Ll~~g~~~~~---~~~~~g~t~L~~A~~~~~~----------~~v~~Ll~~g-a~~~~~d~~g~tpl~ 116 (136)
T 1d9s_A 53 MM-GS-AQVAELLLLHGAEPNC---ADPATLTRPVHDAAREGFL----------DTLVVLHRAG-ARLDVCDAWGRLPVD 116 (136)
T ss_dssp TT-SC-HHHHHHHHHHTCCSSC---CBTTTTBCHHHHHHHHTCH----------HHHHHHHHTC-CCCCCCSSSSSCHHH
T ss_pred Hc-CC-HHHHHHHHHCCCCCCC---cCCCCCCCHHHHHHHcCCH----------HHHHHHHHcC-CCCCccCCCCCCHHH
Confidence 88 99 9999999999999999 9999 99999999999999 9999999999 889999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCc
Q 039483 229 YAAYHRNYLILKLILKIDRT 248 (360)
Q Consensus 229 ~A~~~~~~~~v~~Ll~~g~~ 248 (360)
+|+..++.+++++|+++|+|
T Consensus 117 ~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 117 LAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999875
No 80
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=8.1e-26 Score=186.53 Aligned_cols=145 Identities=11% Similarity=0.031 Sum_probs=116.0
Q ss_pred CCCCCCCCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCC
Q 039483 75 QPVTAKGDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEH 154 (360)
Q Consensus 75 ~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~ 154 (360)
...+..|.|| ||+|+..|+.+++++|+++|++++. .|..|.||| |+|+ .|+
T Consensus 6 ~~~~~~~~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L---------~~A~-~~~ 56 (156)
T 1bi7_B 6 GSSMEPSADW-LATAAARGRVEEVRALLEAGANPNA------------------PNSYGRRPI---------QVMM-MGS 56 (156)
T ss_dssp ----CCSTTH-HHHHHHHTCHHHHHHHHTTTCCTTC------------------CCSSSCCTT---------TSSC-TTC
T ss_pred cCCCccchHH-HHHHHHcCCHHHHHHHHHcCCCCCC------------------CCCCCCCHH---------HHHH-cCC
Confidence 4567889999 9999999999999999999999988 788887555 4443 688
Q ss_pred cHHHHHHHHhhCCCCCccccCCCCCCc-HHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHc
Q 039483 155 SSHTVVAILKSCTSVSHIYMKAPMERQ-ALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYH 233 (360)
Q Consensus 155 ~~~~~~~Ll~~g~~~~~~~~~d~~g~t-~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~ 233 (360)
.+++++|+++|++++. +|..|.| |||+|+..|+. +++++|++++ .+++.+|..|+||||+|+..
T Consensus 57 -~~~v~~Ll~~g~~~~~---~d~~g~ttpL~~A~~~~~~----------~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~ 121 (156)
T 1bi7_B 57 -ARVAELLLLHGAEPNC---ADPATLTRPVHDAAREGFL----------DTLVVLHRAG-ARLDVRDAWGRLPVDLAEEL 121 (156)
T ss_dssp -HHHHHHHHTTTCCCCC---CCTTTCCCHHHHHHHHTCH----------HHHHHHHHHT-CCSSCCCTTCCCHHHHHHHH
T ss_pred -HHHHHHHHHcCCCCCC---cCCCCCcHHHHHHHHCCCH----------HHHHHHHHcC-CCCcccCCCCCCHHHHHHHh
Confidence 9999999999999999 9999999 99999999999 9999999998 88999999999999999999
Q ss_pred CCHHHHHHHHhcCCccccccccCCCCchhhhh
Q 039483 234 RNYLILKLILKIDRTAAKIADKDRKMTALHLV 265 (360)
Q Consensus 234 ~~~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A 265 (360)
|+.+++++|+++|+++ +.++. .|.||.+-+
T Consensus 122 ~~~~~v~~Ll~~ga~~-~~~~~-~g~t~~~~~ 151 (156)
T 1bi7_B 122 GHRDVARYLRAAAGGT-RGSNH-ARIDAAEGP 151 (156)
T ss_dssp TCHHHHHHHSSCC-------------------
T ss_pred CHHHHHHHHHHcCCCC-CccCc-CcCcccccC
Confidence 9999999999999999 99999 999998744
No 81
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=7.5e-26 Score=192.56 Aligned_cols=166 Identities=10% Similarity=0.014 Sum_probs=134.9
Q ss_pred CHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCC-CCCCChHHHHHHhcCCH----HHHHH
Q 039483 26 DPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVT-AKGDTRSRHVAAKFDHC----DIVSV 100 (360)
Q Consensus 26 ~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~-~~g~tp~Lh~A~~~g~~----~~v~~ 100 (360)
+++||.||+.|+.+.++.+++.++ +..+ ..|+|| ||+|+..|+. +++++
T Consensus 7 ~~~l~~Aa~~g~~~~~~~l~~~~~-------------------------~~~~~~~g~T~-Lh~A~~~~~~~~~~~iv~~ 60 (186)
T 3t8k_A 7 YRTVSAAAMLGTYEDFLELFEKGY-------------------------EDKESVLKSNI-LYDVLRNNNDEARYKISMF 60 (186)
T ss_dssp CSSHHHHHHHSCHHHHHHHHHHSS-------------------------SCHHHHHTTTH-HHHHTTCSCHHHHHHHHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHhcCc-------------------------ccccccCCCCH-HHHHHHcCCcchHHHHHHH
Confidence 457999999999999999887422 2233 569999 9999999985 59999
Q ss_pred HHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCc-----HHHHHHHHhhCCCCCccccC
Q 039483 101 LIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHS-----SHTVVAILKSCTSVSHIYMK 175 (360)
Q Consensus 101 Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~-----~~~~~~Ll~~g~~~~~~~~~ 175 (360)
|+++|++++. +|..|+||| |+|+..|+. .+++++|+++|++++. +
T Consensus 61 Ll~~Gadvn~------------------~d~~g~TpL---------h~a~~~~~~~~~~~~~iv~~Ll~~Gadin~---~ 110 (186)
T 3t8k_A 61 LINKGADIKS------------------RTKEGTTLF---------FPLFQGGGNDITGTTELCKIFLEKGADITA---L 110 (186)
T ss_dssp HHHTTCCSSC------------------CCTTCCCTH---------HHHHHHCTTCHHHHHHHHHHHHHTTCCSSS---C
T ss_pred HHHCCCCCCC------------------CCCCCCcHH---------HHHHHcCCcchhhHHHHHHHHHHCCCCCCc---c
Confidence 9999999998 888997555 555555531 5789999999999999 9
Q ss_pred CCCCC-cHHHHHHhcCCcccccccCChHHHHHHHHh-cCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCcccccc
Q 039483 176 APMER-QALHAATMHIDLCKFNHTLSNDCAVQQLFE-GKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKIDRTAAKIA 253 (360)
Q Consensus 176 d~~g~-t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~-~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~ 253 (360)
|..|. ||||+|+..+.. .....+++++|++ .+ ++++.+|..|+||||+|+..|+.+++++|+++.... +.+
T Consensus 111 d~~g~ttpLh~A~~~~~~-----~~~~~~iv~~Ll~~~g-ad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~-~~~ 183 (186)
T 3t8k_A 111 YKPYKIVVFKNIFNYFVD-----ENEMIPLYKLIFSQSG-LQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKY-NLK 183 (186)
T ss_dssp BGGGTBCTTGGGGGCCSC-----HHHHHHHHHHHHTSTT-CCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHH-TCC
T ss_pred CCCcCchHHHHHHHcCCC-----hhhHHHHHHHHHHhcC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHH-hcc
Confidence 99999 999999995443 0001168999999 77 889999999999999999999999999999876555 444
Q ss_pred c
Q 039483 254 D 254 (360)
Q Consensus 254 d 254 (360)
+
T Consensus 184 ~ 184 (186)
T 3t8k_A 184 E 184 (186)
T ss_dssp C
T ss_pred c
Confidence 4
No 82
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.91 E-value=1.6e-24 Score=184.30 Aligned_cols=158 Identities=10% Similarity=-0.035 Sum_probs=136.6
Q ss_pred cCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCC-CCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccC
Q 039483 143 KIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKA-PMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQ 221 (360)
Q Consensus 143 ~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d-~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~ 221 (360)
+++|+.|++.|+ .+.++.++..+. +. ++ ..|+||||+|+..++.. ...+++++|++.+ ++++.+|.
T Consensus 7 ~~~l~~Aa~~g~-~~~~~~l~~~~~--~~---~~~~~g~T~Lh~A~~~~~~~------~~~~iv~~Ll~~G-advn~~d~ 73 (186)
T 3t8k_A 7 YRTVSAAAMLGT-YEDFLELFEKGY--ED---KESVLKSNILYDVLRNNNDE------ARYKISMFLINKG-ADIKSRTK 73 (186)
T ss_dssp CSSHHHHHHHSC-HHHHHHHHHHSS--SC---HHHHHTTTHHHHHTTCSCHH------HHHHHHHHHHHTT-CCSSCCCT
T ss_pred ccHHHHHHHcCC-HHHHHHHHhcCc--cc---ccccCCCCHHHHHHHcCCcc------hHHHHHHHHHHCC-CCCCCCCC
Confidence 589999999999 999999998874 33 44 67999999999999750 0004899999999 89999999
Q ss_pred CCChHHHHHHHcCC------HHHHHHHHhcCCccccccccCCCC-chhhhhhcCCccc------ccccc---cccCccCC
Q 039483 222 CWWTPIHYAAYHRN------YLILKLILKIDRTAAKIADKDRKM-TALHLVHGPKGCQ------NNMLA---SSLMDEGD 285 (360)
Q Consensus 222 ~g~t~Lh~A~~~~~------~~~v~~Ll~~g~~~~~~~d~~~g~-tpLh~A~~~~~~~------~~~L~---~~~~~~~d 285 (360)
.|+||||+|+..++ .+++++|+++|+++ +.+|. .|+ ||||+|+..+..+ +++|+ +++++.+|
T Consensus 74 ~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~-~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d 151 (186)
T 3t8k_A 74 EGTTLFFPLFQGGGNDITGTTELCKIFLEKGADI-TALYK-PYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKD 151 (186)
T ss_dssp TCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBG-GGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCC
T ss_pred CCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCC-CccCC-CcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccC
Confidence 99999999999987 68899999999999 99999 999 9999999855432 56665 49999999
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhhhhcccc
Q 039483 286 AKGNTTVHFFAAVHRKEIFDDLSGRVKATM 315 (360)
Q Consensus 286 ~~g~Tpl~~A~~~~~~~i~~~l~~~~~~~~ 315 (360)
..|+||||+|++.++.++++.|..+.+.+.
T Consensus 152 ~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~ 181 (186)
T 3t8k_A 152 KWGLTALEFVKRCQKPIALKMMEDYIKKYN 181 (186)
T ss_dssp TTSCCHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999998876544
No 83
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.91 E-value=1.4e-23 Score=165.76 Aligned_cols=126 Identities=29% Similarity=0.380 Sum_probs=118.7
Q ss_pred CCCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHH
Q 039483 80 KGDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTV 159 (360)
Q Consensus 80 ~g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~ 159 (360)
+|.|| ||+|+..|+.+++++|+++|++++. .|..|. ||||.|+..|+ .+++
T Consensus 1 ~g~t~-L~~A~~~~~~~~v~~Ll~~~~~~~~------------------~~~~g~---------t~L~~A~~~~~-~~~~ 51 (126)
T 1n0r_A 1 NGRTP-LHLAARNGHLEVVKLLLEAGADVNA------------------KDKNGR---------TPLHLAARNGH-LEVV 51 (126)
T ss_dssp CCCCH-HHHHHHHTCHHHHHHHHHHTCCTTC------------------CCTTSC---------CHHHHHHHHTC-HHHH
T ss_pred CCccH-HHHHHHcCcHHHHHHHHHcCCCCCC------------------cCCCCC---------cHHHHHHHcCc-HHHH
Confidence 58999 9999999999999999999999887 777775 78888889999 9999
Q ss_pred HHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHH
Q 039483 160 VAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLIL 239 (360)
Q Consensus 160 ~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v 239 (360)
++|++.|++++. ++..|.||||+|+..++. +++++|++.+ .+++.+|..|.||||+|+..++.+++
T Consensus 52 ~~Ll~~g~~~~~---~~~~g~t~l~~A~~~~~~----------~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~ 117 (126)
T 1n0r_A 52 KLLLEAGADVNA---KDKNGRTPLHLAARNGHL----------EVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVV 117 (126)
T ss_dssp HHHHHTTCCTTC---CCTTSCCHHHHHHHTTCH----------HHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHcCCCCcc---cCCCCCcHHHHHHHcChH----------HHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCcHHHH
Confidence 999999999999 999999999999999999 9999999998 78899999999999999999999999
Q ss_pred HHHHhcCCc
Q 039483 240 KLILKIDRT 248 (360)
Q Consensus 240 ~~Ll~~g~~ 248 (360)
++|+++|++
T Consensus 118 ~~Ll~~Gad 126 (126)
T 1n0r_A 118 KLLLEAGAY 126 (126)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHcCCC
Confidence 999999975
No 84
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.91 E-value=3.5e-26 Score=215.15 Aligned_cols=214 Identities=14% Similarity=0.034 Sum_probs=162.2
Q ss_pred CCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHHHHh
Q 039483 25 IDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLIER 104 (360)
Q Consensus 25 ~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~ 104 (360)
..+|||.||+.|+.++++.|++.... .... ...+..|.|| ||+||..|+.++|++|+++
T Consensus 92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~-------------------~~~~-~~~~~~~~tp-L~~Aa~~G~~eiv~~Ll~~ 150 (376)
T 2aja_A 92 SEVICFVAAITGCSSALDTLCLLLTS-------------------DEIV-KVIQAENYQA-FRLAAENGHLHVLNRLCEL 150 (376)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTTC--C-------------------CSSC-C--CHHHHHH-HHHHHHTTCHHHHHHHHHS
T ss_pred cCCHHHHHHHcCCHHHHHHHHHcCCc-------------------HHHH-HHhccCCCCH-HHHHHHcCCHHHHHHHHhC
Confidence 34999999999999999999883211 1122 3455678899 9999999999999999999
Q ss_pred ccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHH
Q 039483 105 AKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQALH 184 (360)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh 184 (360)
|+++.. ..++..+ .||||+|+..|+ .+++++|+++|++++.-. +|..|.||||
T Consensus 151 gad~~~-------------~~i~~~~------------~TpLh~Aa~~G~-~eiv~~Ll~~ga~~~~~~-~d~~g~TpL~ 203 (376)
T 2aja_A 151 APTEIM-------------AMIQAEN------------YHAFRLAAENGH-LHVLNRLCELAPTEATAM-IQAENYYAFR 203 (376)
T ss_dssp CTTTHH-------------HHHSHHH------------HHHHHHHHHTTC-HHHHHHHHHSCGGGHHHH-HHHHHHHHHH
T ss_pred CCCccc-------------cccCCCC------------CCHHHHHHHCCC-HHHHHHHHHcCCccchhc-cCCCCCCHHH
Confidence 975321 0011122 389999999999 999999999998754200 4567899999
Q ss_pred HHH-hcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCccccccccCCCCchhh
Q 039483 185 AAT-MHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKIDRTAAKIADKDRKMTALH 263 (360)
Q Consensus 185 ~A~-~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~g~tpLh 263 (360)
+|+ ..|+. +++++|++.+ . .|.||||+|+.+|+.+++++|+++|+++ +..+ ++++
T Consensus 204 ~Aa~~~G~~----------eiv~~Ll~~g-a-------~~~taL~~Aa~~g~~evv~lL~~~ga~~-~~~~-----~~l~ 259 (376)
T 2aja_A 204 WAAVGRGHH----------NVINFLLDCP-V-------MLAYAEIHEFEYGEKYVNPFIARHVNRL-KEMH-----DAFK 259 (376)
T ss_dssp HHHSTTCCH----------HHHHHHTTSH-H-------HHHHHHHCTTTTTTTTHHHHHHHHHHHH-HHHH-----TTTT
T ss_pred HHHHHCCCH----------HHHHHHHhCC-C-------ccchHHHHHHHCCCHHHHHHHHhcCccc-cccc-----HHHH
Confidence 999 99999 9999999865 3 2789999999999999999999999887 5443 3667
Q ss_pred hhhcCCccc-c---------------------------ccccc-------ccCccCCCCCCcHHHHHHHcCCHHHHHHHh
Q 039483 264 LVHGPKGCQ-N---------------------------NMLAS-------SLMDEGDAKGNTTVHFFAAVHRKEIFDDLS 308 (360)
Q Consensus 264 ~A~~~~~~~-~---------------------------~~L~~-------~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~ 308 (360)
.|+..++.+ + ++|++ .......+.++||||+|++.|+.++++.|+
T Consensus 260 ~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl 339 (376)
T 2aja_A 260 LSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 339 (376)
T ss_dssp TTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHT
T ss_pred HHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHH
Confidence 776666555 2 11111 111233456889999999999999999998
Q ss_pred hh
Q 039483 309 GR 310 (360)
Q Consensus 309 ~~ 310 (360)
..
T Consensus 340 ~~ 341 (376)
T 2aja_A 340 SI 341 (376)
T ss_dssp TS
T ss_pred cC
Confidence 75
No 85
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.90 E-value=8.3e-24 Score=170.28 Aligned_cols=128 Identities=18% Similarity=0.152 Sum_probs=117.0
Q ss_pred CCCCCCCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCc
Q 039483 76 PVTAKGDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHS 155 (360)
Q Consensus 76 ~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~ 155 (360)
.....|.|| ||+||..|+.+++++|+++|++++. .|..|. ||||+|+..|+
T Consensus 9 ~~~~~~~t~-l~~A~~~g~~~~v~~Ll~~g~~~~~------------------~~~~g~---------t~L~~A~~~~~- 59 (136)
T 2jab_A 9 HHGSDLGKK-LLEAARAGQDDEVRILMANGADVNA------------------KDEYGL---------TPLYLATAHGH- 59 (136)
T ss_dssp ---CHHHHH-HHHHHHHTCHHHHHHHHHTTCCTTC------------------CCTTSC---------CHHHHHHHHTC-
T ss_pred cccccccHH-HHHHHHhCCHHHHHHHHHcCCCCCC------------------cCCCCC---------CHHHHHHHcCC-
Confidence 345567899 9999999999999999999999988 778875 88888899999
Q ss_pred HHHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCC
Q 039483 156 SHTVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRN 235 (360)
Q Consensus 156 ~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~ 235 (360)
.+++++|+++|++++. +|..|.||||+|+..|+. +++++|++.+ .+++..|..|+||||+|+..|+
T Consensus 60 ~~~v~~Ll~~g~~~~~---~d~~g~t~L~~A~~~~~~----------~~v~~Ll~~g-~~~~~~~~~g~tpl~~A~~~~~ 125 (136)
T 2jab_A 60 LEIVEVLLKNGADVNA---VDAIGFTPLHLAAFIGHL----------EIAEVLLKHG-ADVNAQDKFGKTAFDISIGNGN 125 (136)
T ss_dssp HHHHHHHHHTTCCTTC---CCTTCCCHHHHHHHHTCH----------HHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCc---CCCCCCCHHHHHHHcCCH----------HHHHHHHHcC-CCCcCcCCCCCCHHHHHHHCCC
Confidence 9999999999999999 999999999999999999 9999999998 8899999999999999999999
Q ss_pred HHHHHHHHhcC
Q 039483 236 YLILKLILKID 246 (360)
Q Consensus 236 ~~~v~~Ll~~g 246 (360)
.+++++|+++|
T Consensus 126 ~~~~~~Ll~~G 136 (136)
T 2jab_A 126 EDLAEILQKLN 136 (136)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHcC
Confidence 99999999876
No 86
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.89 E-value=2.1e-23 Score=171.91 Aligned_cols=142 Identities=12% Similarity=0.083 Sum_probs=114.6
Q ss_pred CCCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHH
Q 039483 22 QPQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVL 101 (360)
Q Consensus 22 ~~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~L 101 (360)
...+.++||.|+..|+.++++.|++. +.++ +.+|..|.|| ||+|+ .|+.+++++|
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~----------------------g~~~-~~~~~~g~t~-L~~A~-~~~~~~v~~L 63 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLEA----------------------GANP-NAPNSYGRRP-IQVMM-MGSARVAELL 63 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHTT----------------------TCCT-TCCCSSSCCT-TTSSC-TTCHHHHHHH
T ss_pred CccchHHHHHHHHcCCHHHHHHHHHc----------------------CCCC-CCCCCCCCCH-HHHHH-cCCHHHHHHH
Confidence 45567899999999999999999883 6667 8889999999 99985 9999999999
Q ss_pred HHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcC-HHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCC
Q 039483 102 IERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKI-PLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMER 180 (360)
Q Consensus 102 l~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t-~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~ 180 (360)
+++|++++. +|..|. | |||+|+..|+ .+++++|+++|++++. +|..|.
T Consensus 64 l~~g~~~~~------------------~d~~g~---------ttpL~~A~~~~~-~~~v~~Ll~~ga~~~~---~d~~g~ 112 (156)
T 1bi7_B 64 LLHGAEPNC------------------ADPATL---------TRPVHDAAREGF-LDTLVVLHRAGARLDV---RDAWGR 112 (156)
T ss_dssp HTTTCCCCC------------------CCTTTC---------CCHHHHHHHHTC-HHHHHHHHHHTCCSSC---CCTTCC
T ss_pred HHcCCCCCC------------------cCCCCC---------cHHHHHHHHCCC-HHHHHHHHHcCCCCcc---cCCCCC
Confidence 999999988 788875 6 8888899999 9999999999999999 999999
Q ss_pred cHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHH
Q 039483 181 QALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYA 230 (360)
Q Consensus 181 t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A 230 (360)
||||+|+..|+. +++++|++++ .+++..+..|.||.+-+
T Consensus 113 tpl~~A~~~~~~----------~~v~~Ll~~g-a~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 113 LPVDLAEELGHR----------DVARYLRAAA-GGTRGSNHARIDAAEGP 151 (156)
T ss_dssp CHHHHHHHHTCH----------HHHHHHSSCC------------------
T ss_pred CHHHHHHHhCHH----------HHHHHHHHcC-CCCCccCcCcCcccccC
Confidence 999999999999 9999999999 88999999999987743
No 87
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=1.1e-22 Score=172.32 Aligned_cols=136 Identities=18% Similarity=0.176 Sum_probs=126.2
Q ss_pred cCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCcccccccc-C
Q 039483 143 KIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGID-Q 221 (360)
Q Consensus 143 ~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d-~ 221 (360)
.||||.|+..|+ .++++.|++ |.+++. +|..|.||||+|+..|+. +++++|++.+ .+++..+ .
T Consensus 45 ~t~L~~A~~~g~-~~~v~~Ll~-~~~~~~---~d~~g~t~L~~A~~~~~~----------~~v~~Ll~~g-a~~~~~~~~ 108 (183)
T 3deo_A 45 ETPWWTAARKAD-EQALSQLLE-DRDVDA---VDENGRTALLFVAGLGSD----------KCVRLLAEAG-ADLDHRDMR 108 (183)
T ss_dssp HHHHHHHHHTTC-HHHHHHHTT-TSCTTC---CCTTSCCHHHHHHHHTCH----------HHHHHHHHTT-CCTTCCCSS
T ss_pred CCHHHHHHHcCC-HHHHHHHHh-cCCCCC---cCCCCCCHHHHHHHcCCH----------HHHHHHHHcC-CCCCcCCCC
Confidence 589999999999 999999999 999999 999999999999999999 9999999998 8888888 8
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCccccccccCCCCchhhhhhcCCcccccccccccCccCCCCCCcHHHHHHHcCCH
Q 039483 222 CWWTPIHYAAYHRNYLILKLILKIDRTAAKIADKDRKMTALHLVHGPKGCQNNMLASSLMDEGDAKGNTTVHFFAAVHRK 301 (360)
Q Consensus 222 ~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~~~~L~~~~~~~~d~~g~Tpl~~A~~~~~~ 301 (360)
.|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..++ ...+.+|+++|++.|+.
T Consensus 109 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~-~g~tpl~~A~~~~~--------------~~~~~~~l~~a~~~~~~ 172 (183)
T 3deo_A 109 GGLTALHMAAGYVRPEVVEALVELGADI-EVEDE-RGLTALELAREILK--------------TTPKGNPMQFGRRIGLE 172 (183)
T ss_dssp SSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCT-TSCCHHHHHHHHHH--------------TCCCCSHHHHHHHHHHH
T ss_pred CCCCHHHHHHhcCcHHHHHHHHHcCCCC-cCCCC-CCCCHHHHHHHhcc--------------CcccccHHHHHHHcCHH
Confidence 9999999999999999999999999999 99999 99999999976432 24678999999999999
Q ss_pred HHHHHHhhh
Q 039483 302 EIFDDLSGR 310 (360)
Q Consensus 302 ~i~~~l~~~ 310 (360)
++++.|.++
T Consensus 173 ~i~~~L~~~ 181 (183)
T 3deo_A 173 KVINVLEGQ 181 (183)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHh
Confidence 999998765
No 88
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.88 E-value=3.7e-22 Score=160.53 Aligned_cols=125 Identities=14% Similarity=0.113 Sum_probs=115.3
Q ss_pred CCCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHH
Q 039483 22 QPQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVL 101 (360)
Q Consensus 22 ~~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~L 101 (360)
...+.+|||.|+..|+.++++.|++. +.++ +.+|..|.|| ||+|+. |+.+++++|
T Consensus 9 ~~~g~t~L~~A~~~~~~~~v~~Ll~~----------------------g~~~-~~~~~~g~t~-L~~A~~-~~~~~v~~L 63 (136)
T 1d9s_A 9 GGSSDAGLATAAARGQVETVRQLLEA----------------------GADP-NALNRFGRRP-IQVMMM-GSAQVAELL 63 (136)
T ss_dssp CCCCSCHHHHHHHTTCHHHHHHHHHT----------------------TCCT-TCCCTTCCTT-TTTSTT-SCHHHHHHH
T ss_pred CCCCccHHHHHHHcCCHHHHHHHHHc----------------------CCCc-CCcCCCCCCH-HHHHHc-CCHHHHHHH
Confidence 45677999999999999999999984 5667 8889999999 999999 999999999
Q ss_pred HHhccccCcccccccccchhhHHHhhcccCC-CCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCC
Q 039483 102 IERAKLVQHEDEELESGVGASRQMIRMTNKE-KHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMER 180 (360)
Q Consensus 102 l~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~ 180 (360)
+++|++++. +|.. |. ||||+|+..|+ .+++++|+++|++++. +|..|.
T Consensus 64 l~~g~~~~~------------------~~~~~g~---------t~L~~A~~~~~-~~~v~~Ll~~ga~~~~---~d~~g~ 112 (136)
T 1d9s_A 64 LLHGAEPNC------------------ADPATLT---------RPVHDAAREGF-LDTLVVLHRAGARLDV---CDAWGR 112 (136)
T ss_dssp HHHTCCSSC------------------CBTTTTB---------CHHHHHHHHTC-HHHHHHHHHTCCCCCC---CSSSSS
T ss_pred HHCCCCCCC------------------cCCCCCC---------CHHHHHHHcCC-HHHHHHHHHcCCCCCc---cCCCCC
Confidence 999999988 7777 75 88888899999 9999999999999999 999999
Q ss_pred cHHHHHHhcCCcccccccCChHHHHHHHHhcC
Q 039483 181 QALHAATMHIDLCKFNHTLSNDCAVQQLFEGK 212 (360)
Q Consensus 181 t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~ 212 (360)
||||+|+..++. +++++|++++
T Consensus 113 tpl~~A~~~~~~----------~~~~~Ll~~G 134 (136)
T 1d9s_A 113 LPVDLAEEQGHR----------DIARYLHAAT 134 (136)
T ss_dssp CHHHHHHHHTCH----------HHHHHHHHHH
T ss_pred CHHHHHHHcCCH----------HHHHHHHHcC
Confidence 999999999999 9999999887
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.88 E-value=8.5e-22 Score=158.43 Aligned_cols=126 Identities=18% Similarity=0.187 Sum_probs=114.5
Q ss_pred CCCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHH
Q 039483 22 QPQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVL 101 (360)
Q Consensus 22 ~~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~L 101 (360)
...+.++||.||..|+.++++.|++. +.++ +.+|..|.|| ||+|+..|+.+++++|
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~----------------------g~~~-~~~~~~g~t~-L~~A~~~~~~~~v~~L 66 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMAN----------------------GADV-NAKDEYGLTP-LYLATAHGHLEIVEVL 66 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHT----------------------TCCT-TCCCTTSCCH-HHHHHHHTCHHHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHc----------------------CCCC-CCcCCCCCCH-HHHHHHcCCHHHHHHH
Confidence 34567899999999999999999984 6667 8889999999 9999999999999999
Q ss_pred HHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCc
Q 039483 102 IERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQ 181 (360)
Q Consensus 102 l~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t 181 (360)
+++|++++. +|..|. ||||+|+..|+ .+++++|+++|++++. +|..|.|
T Consensus 67 l~~g~~~~~------------------~d~~g~---------t~L~~A~~~~~-~~~v~~Ll~~g~~~~~---~~~~g~t 115 (136)
T 2jab_A 67 LKNGADVNA------------------VDAIGF---------TPLHLAAFIGH-LEIAEVLLKHGADVNA---QDKFGKT 115 (136)
T ss_dssp HHTTCCTTC------------------CCTTCC---------CHHHHHHHHTC-HHHHHHHHHTTCCTTC---CCTTSCC
T ss_pred HHcCCCCCc------------------CCCCCC---------CHHHHHHHcCC-HHHHHHHHHcCCCCcC---cCCCCCC
Confidence 999999988 788885 78888889999 9999999999999999 9999999
Q ss_pred HHHHHHhcCCcccccccCChHHHHHHHHhcC
Q 039483 182 ALHAATMHIDLCKFNHTLSNDCAVQQLFEGK 212 (360)
Q Consensus 182 ~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~ 212 (360)
|||+|+..++. +++++|+++|
T Consensus 116 pl~~A~~~~~~----------~~~~~Ll~~G 136 (136)
T 2jab_A 116 AFDISIGNGNE----------DLAEILQKLN 136 (136)
T ss_dssp HHHHHHHTTCH----------HHHHHHHHC-
T ss_pred HHHHHHHCCCH----------HHHHHHHHcC
Confidence 99999999999 9999999864
No 90
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.88 E-value=1.7e-22 Score=179.16 Aligned_cols=137 Identities=19% Similarity=0.182 Sum_probs=127.1
Q ss_pred cCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCcccccccc-C
Q 039483 143 KIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGID-Q 221 (360)
Q Consensus 143 ~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d-~ 221 (360)
.||||.|+..|+ .++++.|++ |++++. +|..|.||||+|+..|+. +++++|++.+ .+++..+ .
T Consensus 46 ~t~L~~A~~~g~-~~~v~~Ll~-~~~~~~---~d~~g~t~L~~A~~~g~~----------~~v~~Ll~~g-a~~~~~~~~ 109 (244)
T 3ui2_A 46 ETPWWTAARKAD-EQALSQLLE-DRDVDA---VDENGRTALLFVAGLGSD----------KCVRLLAEAG-ADLDHRDMR 109 (244)
T ss_dssp HHHHHHHHTTTC-HHHHHHTTT-TCCTTC---BCTTSCBHHHHHHHHTCH----------HHHHHHHHTT-CCTTCCCSS
T ss_pred CCHHHHHHHcCC-HHHHHHHHc-CCCCCC---cCCCCCCHHHHHHHCCCH----------HHHHHHHHcC-CCCCcCCCC
Confidence 489999999999 999999999 999999 999999999999999999 9999999998 8888888 8
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCccccccccCCCCchhhhhhcCCcccccccccccCccCCCCCCcHHHHHHHcCCH
Q 039483 222 CWWTPIHYAAYHRNYLILKLILKIDRTAAKIADKDRKMTALHLVHGPKGCQNNMLASSLMDEGDAKGNTTVHFFAAVHRK 301 (360)
Q Consensus 222 ~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~~~~L~~~~~~~~d~~g~Tpl~~A~~~~~~ 301 (360)
.|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+.. .....+.|||++|+..|+.
T Consensus 110 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~-~g~t~l~~A~~~--------------~~~~~~~~~l~~a~~~g~~ 173 (244)
T 3ui2_A 110 GGLTALHMAAGYVRPEVVEALVELGADI-EVEDE-RGLTALELAREI--------------LKTTPKGNPMQFGRRIGLE 173 (244)
T ss_dssp SCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHH--------------HTTCCCSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCC-CCCcHHHHHHHH--------------HhccCCCCHHHHHHHcChH
Confidence 8999999999999999999999999999 99999 999999999653 2236789999999999999
Q ss_pred HHHHHHhhhh
Q 039483 302 EIFDDLSGRV 311 (360)
Q Consensus 302 ~i~~~l~~~~ 311 (360)
++++.|.+..
T Consensus 174 ~iv~~L~~~~ 183 (244)
T 3ui2_A 174 KVINVLEGQV 183 (244)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999998863
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.87 E-value=4.9e-23 Score=165.79 Aligned_cols=112 Identities=19% Similarity=0.156 Sum_probs=59.8
Q ss_pred CHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCC
Q 039483 144 IPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCW 223 (360)
Q Consensus 144 t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g 223 (360)
||||+|+..|+ .+++++|++.|++++. +|..|.||||+|+..++. +++++|++.+ .+++..|..|
T Consensus 12 t~L~~A~~~~~-~~~~~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~----------~~~~~Ll~~g-~~~~~~~~~g 76 (137)
T 3c5r_A 12 TLLHIASIKGD-IPSVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHL----------KVVELLLQHK-ALVNTTGYQN 76 (137)
T ss_dssp CHHHHHHHHTC-HHHHHHHHHTTCCSCC---CCTTSCCHHHHHHHTTCH----------HHHHHHHHTT-CCTTCCCGGG
T ss_pred CHHHHHHHcCC-HHHHHHHHHcCCCCCc---CCCCCCCHHHHHHHcCCH----------HHHHHHHHcC-CcccCcCCCC
Confidence 44444444555 5555555555555554 555555555555555555 5555555554 4455555555
Q ss_pred ChHHHHHHHcCCHHHHHHHHhcCCccccccccCCCCchhhhhhcCCccc
Q 039483 224 WTPIHYAAYHRNYLILKLILKIDRTAAKIADKDRKMTALHLVHGPKGCQ 272 (360)
Q Consensus 224 ~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~ 272 (360)
+||||+|+..|+.+++++|+++|+++ +.+|. .|.||||+|+..+..+
T Consensus 77 ~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~-~g~tpl~~A~~~~~~~ 123 (137)
T 3c5r_A 77 DSPLHDAAKNGHVDIVKLLLSYGASR-NAVNI-FGLRPVDYTDDESMKS 123 (137)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCGGGGCCCHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHhhccHHH
Confidence 55555555555555555555555555 55555 5555555555444333
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.87 E-value=3.2e-22 Score=161.00 Aligned_cols=123 Identities=19% Similarity=0.202 Sum_probs=114.2
Q ss_pred CCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCccccccc
Q 039483 175 KAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKIDRTAAKIAD 254 (360)
Q Consensus 175 ~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d 254 (360)
+|..|.||||+|+..|+. +++++|++.+ .+++..|..|+||||+|+..|+.+++++|+++|+++ +.+|
T Consensus 6 ~~~~g~t~L~~A~~~~~~----------~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~ 73 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDI----------PSVEYLLQNG-SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTG 73 (137)
T ss_dssp CCTTCCCHHHHHHHHTCH----------HHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC
T ss_pred cCCCCCCHHHHHHHcCCH----------HHHHHHHHcC-CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcC
Confidence 789999999999999999 9999999998 789999999999999999999999999999999999 9999
Q ss_pred cCCCCchhhhhhcCCccc-cccccc--ccCccCCCCCCcHHHHHHHcCCHHHHHHHhhh
Q 039483 255 KDRKMTALHLVHGPKGCQ-NNMLAS--SLMDEGDAKGNTTVHFFAAVHRKEIFDDLSGR 310 (360)
Q Consensus 255 ~~~g~tpLh~A~~~~~~~-~~~L~~--~~~~~~d~~g~Tpl~~A~~~~~~~i~~~l~~~ 310 (360)
. .|+||||+|+..++.+ +++|+. ++++.+|..|+||+|+|+..+..++++.+.+.
T Consensus 74 ~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~ 131 (137)
T 3c5r_A 74 Y-QNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN 131 (137)
T ss_dssp G-GGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred C-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence 9 9999999999999999 888884 89999999999999999999999988877654
No 93
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.86 E-value=1.4e-21 Score=173.25 Aligned_cols=143 Identities=14% Similarity=0.146 Sum_probs=126.4
Q ss_pred CCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHHH
Q 039483 23 PQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLI 102 (360)
Q Consensus 23 ~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll 102 (360)
..+.+|||.||+.|+.++++.|++ +.++ +.+|..|.|| ||+||..|+.++|++|+
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-----------------------~~~~-~~~d~~g~t~-L~~A~~~g~~~~v~~Ll 97 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-----------------------DRDV-DAVDENGRTA-LLFVAGLGSDKCVRLLA 97 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-----------------------TCCT-TCBCTTSCBH-HHHHHHHTCHHHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-----------------------CCCC-CCcCCCCCCH-HHHHHHCCCHHHHHHHH
Confidence 356799999999999999999988 4566 8889999999 99999999999999999
Q ss_pred HhccccCcccccccccchhhHHHhhccc-CCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCc
Q 039483 103 ERAKLVQHEDEELESGVGASRQMIRMTN-KEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQ 181 (360)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~~~l~~~d-~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t 181 (360)
++|++++. ++ ..|. ||||+|+..|+ .+++++|+++|++++. +|..|.|
T Consensus 98 ~~ga~~~~------------------~~~~~g~---------t~L~~A~~~g~-~~~v~~Ll~~ga~~~~---~d~~g~t 146 (244)
T 3ui2_A 98 EAGADLDH------------------RDMRGGL---------TALHMAAGYVR-PEVVEALVELGADIEV---EDERGLT 146 (244)
T ss_dssp HTTCCTTC------------------CCSSSCC---------CHHHHHHHTTC-HHHHHHHHHTTCCTTC---CCTTCCC
T ss_pred HcCCCCCc------------------CCCCCCC---------CHHHHHHHcCC-HHHHHHHHHCCCCCCC---CCCCCCc
Confidence 99999988 55 6675 88888899999 9999999999999999 9999999
Q ss_pred HHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCcc
Q 039483 182 ALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKIDRTA 249 (360)
Q Consensus 182 ~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~ 249 (360)
|||+|+..++. ..+.||||+|+..|+.+++++|++.+.+.
T Consensus 147 ~l~~A~~~~~~----------------------------~~~~~~l~~a~~~g~~~iv~~L~~~~~~~ 186 (244)
T 3ui2_A 147 ALELAREILKT----------------------------TPKGNPMQFGRRIGLEKVINVLEGQVFEY 186 (244)
T ss_dssp HHHHHHHHHTT----------------------------CCCSSHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred HHHHHHHHHhc----------------------------cCCCCHHHHHHHcChHHHHHHHHHhcccc
Confidence 99999864433 35689999999999999999999876553
No 94
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.86 E-value=5.6e-21 Score=150.61 Aligned_cols=123 Identities=28% Similarity=0.324 Sum_probs=113.7
Q ss_pred CCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHHHHh
Q 039483 25 IDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLIER 104 (360)
Q Consensus 25 ~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~ 104 (360)
+.++||.|++.|+.++++.|++. +..+ +.+|..|.|| ||+|+..|+.+++++|+++
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~----------------------~~~~-~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~ 57 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEA----------------------GADV-NAKDKNGRTP-LHLAARNGHLEVVKLLLEA 57 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHH----------------------TCCT-TCCCTTSCCH-HHHHHHHTCHHHHHHHHHT
T ss_pred CccHHHHHHHcCcHHHHHHHHHc----------------------CCCC-CCcCCCCCcH-HHHHHHcCcHHHHHHHHHc
Confidence 56899999999999999999984 5566 7888999999 9999999999999999999
Q ss_pred ccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHH
Q 039483 105 AKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQALH 184 (360)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh 184 (360)
|++++. +|..|. ||||+|+..|+ .+++++|+++|++++. +|..|.||||
T Consensus 58 g~~~~~------------------~~~~g~---------t~l~~A~~~~~-~~~~~~Ll~~g~~~~~---~~~~g~t~l~ 106 (126)
T 1n0r_A 58 GADVNA------------------KDKNGR---------TPLHLAARNGH-LEVVKLLLEAGADVNA---KDKNGRTPLH 106 (126)
T ss_dssp TCCTTC------------------CCTTSC---------CHHHHHHHTTC-HHHHHHHHHTTCCTTC---CCTTSCCHHH
T ss_pred CCCCcc------------------cCCCCC---------cHHHHHHHcCh-HHHHHHHHHcCCCCcc---cCCCCCCHHH
Confidence 999887 777775 78888888999 9999999999999999 9999999999
Q ss_pred HHHhcCCcccccccCChHHHHHHHHhcC
Q 039483 185 AATMHIDLCKFNHTLSNDCAVQQLFEGK 212 (360)
Q Consensus 185 ~A~~~~~~~~~~~~~~~~~~~~~Ll~~~ 212 (360)
+|+..++. +++++|++++
T Consensus 107 ~A~~~~~~----------~~~~~Ll~~G 124 (126)
T 1n0r_A 107 LAARNGHL----------EVVKLLLEAG 124 (126)
T ss_dssp HHHHTTCH----------HHHHHHHHHT
T ss_pred HHHHcCcH----------HHHHHHHHcC
Confidence 99999999 9999999987
No 95
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.86 E-value=2.8e-21 Score=163.52 Aligned_cols=139 Identities=14% Similarity=0.170 Sum_probs=122.7
Q ss_pred CCCCHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCCCCCCChHHHHHHhcCCHHHHHHHH
Q 039483 23 PQIDPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLI 102 (360)
Q Consensus 23 ~~~~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll 102 (360)
..+.+|||.|+..|+.+.++.|++ +.++ +.+|..|.|| ||+|+..|+.+++++|+
T Consensus 42 ~~g~t~L~~A~~~g~~~~v~~Ll~-----------------------~~~~-~~~d~~g~t~-L~~A~~~~~~~~v~~Ll 96 (183)
T 3deo_A 42 SEYETPWWTAARKADEQALSQLLE-----------------------DRDV-DAVDENGRTA-LLFVAGLGSDKCVRLLA 96 (183)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTT-----------------------TSCT-TCCCTTSCCH-HHHHHHHTCHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh-----------------------cCCC-CCcCCCCCCH-HHHHHHcCCHHHHHHHH
Confidence 356799999999999999999988 4566 8889999999 99999999999999999
Q ss_pred HhccccCcccccccccchhhHHHhhccc-CCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCc
Q 039483 103 ERAKLVQHEDEELESGVGASRQMIRMTN-KEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQ 181 (360)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~~~l~~~d-~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t 181 (360)
++|++++. +| ..|. ||||+|+..|+ .+++++|+++|++++. +|..|.|
T Consensus 97 ~~ga~~~~------------------~~~~~g~---------tpL~~A~~~~~-~~~v~~Ll~~ga~~~~---~d~~g~t 145 (183)
T 3deo_A 97 EAGADLDH------------------RDMRGGL---------TALHMAAGYVR-PEVVEALVELGADIEV---EDERGLT 145 (183)
T ss_dssp HTTCCTTC------------------CCSSSSC---------CHHHHHHHTTC-HHHHHHHHHHTCCTTC---CCTTSCC
T ss_pred HcCCCCCc------------------CCCCCCC---------CHHHHHHhcCc-HHHHHHHHHcCCCCcC---CCCCCCC
Confidence 99999987 55 7775 88888889999 9999999999999999 9999999
Q ss_pred HHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhc
Q 039483 182 ALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKI 245 (360)
Q Consensus 182 ~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 245 (360)
|||+|+..++. ..+.++|++|+..|+.+++++|.++
T Consensus 146 pl~~A~~~~~~----------------------------~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 146 ALELAREILKT----------------------------TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp HHHHHHHHHHT----------------------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhccC----------------------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence 99999876555 2356899999999999999999765
No 96
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.86 E-value=2.2e-22 Score=175.56 Aligned_cols=137 Identities=17% Similarity=0.063 Sum_probs=99.9
Q ss_pred CCCCCCCCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCC
Q 039483 75 QPVTAKGDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEH 154 (360)
Q Consensus 75 ~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~ 154 (360)
+..+..|.|| ||+||..|+.+++++|++.|++++. +|..|. ||||+|+..|+
T Consensus 67 ~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~------------------~~~~g~---------t~L~~A~~~~~ 118 (222)
T 3ehr_A 67 AEQAESIDNP-LHEAAKRGNLSWLRECLDNRVGVNG------------------LDKAGS---------TALYWACHGGH 118 (222)
T ss_dssp HHHEEEESCH-HHHHHHHTCHHHHHHHHHTTCCTTC------------------CCTTSC---------CHHHHHHHTTC
T ss_pred cccccccccc-cccccccCcHHHHHHHHhCCCCccc------------------cCCCCC---------CHHHHHHHcCC
Confidence 4455667888 8888888888888888888888776 666764 67777777888
Q ss_pred cHHHHHHHHhh-CCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHc
Q 039483 155 SSHTVVAILKS-CTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYH 233 (360)
Q Consensus 155 ~~~~~~~Ll~~-g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~ 233 (360)
.+++++|++. |++++. +|..|.||||+|+..|+. +++++|++.+ ++++.+|..|+||||+|+..
T Consensus 119 -~~~v~~Ll~~~g~~~~~---~d~~g~tpL~~A~~~~~~----------~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~ 183 (222)
T 3ehr_A 119 -KDIVEMLFTQPNIELNQ---QNKLGDTALHAAAWKGYA----------DIVQLLLAKG-ARTDLRNIEKKLAFDMATNA 183 (222)
T ss_dssp -HHHHHHHTTSTTCCCCC---CCTTSCCHHHHHHHHTCH----------HHHHHHHHHT-CCSCCCCTTSCCHHHHCCSH
T ss_pred -HHHHHHHHcCCCCCccc---cCCCCCCHHHHHHHcCCH----------HHHHHHHHcC-CCCccccCCCCCHHHHhcch
Confidence 8888888887 888888 888888888888888888 8888888887 77788888888888888888
Q ss_pred CCHHHHHHHHhcCCcccccccc
Q 039483 234 RNYLILKLILKIDRTAAKIADK 255 (360)
Q Consensus 234 ~~~~~v~~Ll~~g~~~~~~~d~ 255 (360)
++.++++.|++.|+.. ..++.
T Consensus 184 ~~~~~l~~l~~~~~~~-~~~~~ 204 (222)
T 3ehr_A 184 ACASLLKKKQGTDAVR-TLSNA 204 (222)
T ss_dssp HHHHHHC---------------
T ss_pred hHHHHHHHHhccchhh-hccch
Confidence 8888888888887776 55554
No 97
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=179.33 Aligned_cols=147 Identities=14% Similarity=0.035 Sum_probs=121.2
Q ss_pred CCCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhc---CCcH
Q 039483 80 KGDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEY---EHSS 156 (360)
Q Consensus 80 ~g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~---g~~~ 156 (360)
.+.++ ||.|+..|+.+.++.|++.|++++..-. . ...+..|. ||||+|+.. |+ .
T Consensus 150 ~~~~~-L~~A~~~g~~~~v~~ll~~g~d~~~~~~---~---------~~~~~~g~---------t~Lh~A~~~~~~~~-~ 206 (301)
T 2b0o_E 150 PEPQR-LWTAICNRDLLSVLEAFANGQDFGQPLP---G---------PDAQAPEE---------LVLHLAVKVANQAS-L 206 (301)
T ss_dssp -CHHH-HHHHHHTTCHHHHHHHHHTTCCTTSCEE---C---------SSSCSCEE---------CHHHHHHHTCCTTT-H
T ss_pred chHHH-HhhhhhccCHHHHHHHHhcCCcccccCC---C---------cccCCCCc---------cHHHHHHHhcccCc-H
Confidence 34578 9999999999999999999998875100 0 00356664 777777776 78 9
Q ss_pred HHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCH
Q 039483 157 HTVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNY 236 (360)
Q Consensus 157 ~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~ 236 (360)
+++++|+++|++++. +|..|+||||+|+..|+. +++++|++++ ++++.+|..|.||||+|+..|+.
T Consensus 207 ~iv~~Ll~~gadvn~---~d~~G~TpLh~A~~~g~~----------~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~~~~ 272 (301)
T 2b0o_E 207 PLVDFIIQNGGHLDA---KAADGNTALHYAALYNQP----------DCLKLLLKGR-ALVGTVNEAGETALDIARKKHHK 272 (301)
T ss_dssp HHHHHHHHHSSCTTC---CCTTCCCHHHHHHHTTCH----------HHHHHHHHTT-CCCSCCCTTSCCHHHHHHHHTCH
T ss_pred HHHHHHHhcCCCCCC---CCCCCCCHHHHHHHcCCH----------HHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCH
Confidence 999999999999999 999999999999999999 9999999998 88999999999999999999999
Q ss_pred HHHHHHHhcCCccccccccCCCCchhhhhhcCCcc
Q 039483 237 LILKLILKIDRTAAKIADKDRKMTALHLVHGPKGC 271 (360)
Q Consensus 237 ~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~ 271 (360)
+++++|+++|++ .|.||||+|+..++.
T Consensus 273 ~iv~~Ll~~ga~--------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 273 ECEELLEQAQAG--------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHHHHHHHH--------TTSSCCC--------
T ss_pred HHHHHHHHhcCC--------CCCChhHHHHhcCCc
Confidence 999999998865 478999999887653
No 98
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.86 E-value=8.1e-22 Score=155.64 Aligned_cols=105 Identities=19% Similarity=0.157 Sum_probs=54.1
Q ss_pred CHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCC
Q 039483 144 IPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCW 223 (360)
Q Consensus 144 t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g 223 (360)
||||.|+..|+ .+++++|++.|++++. +|..|.||||+|+..++. +++++|++.+ .+++.+|..|
T Consensus 9 ~~l~~A~~~~~-~~~v~~ll~~~~~~~~---~~~~g~t~L~~A~~~~~~----------~~v~~Ll~~g-~~~~~~d~~g 73 (123)
T 3aaa_C 9 KEFMWALKNGD-LDEVKDYVAKGEDVNR---TLEGGRKPLHYAADCGQL----------EILEFLLLKG-ADINAPDKHH 73 (123)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHTTCCTTS---CCTTSSCHHHHHHHTTCH----------HHHHHHHTTT-CCTTCCCTTS
T ss_pred hHHHHHHHcCC-HHHHHHHHHcCCCcCc---cCCCCCcHHHHHHHcCCH----------HHHHHHHHcC-CCCCcCCCCC
Confidence 44444444555 5555555555554444 455555555555555555 5555555544 4445555555
Q ss_pred ChHHHHHHHcCCHHHHHHHHhcCCccccccccCCCCchhhhh
Q 039483 224 WTPIHYAAYHRNYLILKLILKIDRTAAKIADKDRKMTALHLV 265 (360)
Q Consensus 224 ~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A 265 (360)
+||||+|+..|+.+++++|+++|+++ +.+|. .|.||||+|
T Consensus 74 ~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~-~g~t~l~~A 113 (123)
T 3aaa_C 74 ITPLLSAVYEGHVSCVKLLLSKGADK-TVKGP-DGLTAFEAT 113 (123)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHh
Confidence 55555555555555555555555555 55555 555555555
No 99
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.85 E-value=2.8e-21 Score=176.69 Aligned_cols=139 Identities=16% Similarity=0.140 Sum_probs=117.3
Q ss_pred CHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCC------CCCCCCChHHHHHHhc---CCHH
Q 039483 26 DPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQP------VTAKGDTRSRHVAAKF---DHCD 96 (360)
Q Consensus 26 ~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~------~~~~g~tp~Lh~A~~~---g~~~ 96 (360)
.++|+.|+..|+++.++.|++. +.++ +. .+..|.|| ||+|+.. |+.+
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~~----------------------g~d~-~~~~~~~~~~~~g~t~-Lh~A~~~~~~~~~~ 207 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFAN----------------------GQDF-GQPLPGPDAQAPEELV-LHLAVKVANQASLP 207 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT----------------------TCCT-TSCEECSSSCSCEECH-HHHHHHTCCTTTHH
T ss_pred HHHHhhhhhccCHHHHHHHHhc----------------------CCcc-cccCCCcccCCCCccH-HHHHHHhcccCcHH
Confidence 4679999999999999999874 3333 33 68889999 9999997 8999
Q ss_pred HHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCC
Q 039483 97 IVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKA 176 (360)
Q Consensus 97 ~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d 176 (360)
++++|+++|++++. +|..|. ||||+|+..|+ .+++++|+++|++++. +|
T Consensus 208 iv~~Ll~~gadvn~------------------~d~~G~---------TpLh~A~~~g~-~~~v~~Ll~~gad~~~---~d 256 (301)
T 2b0o_E 208 LVDFIIQNGGHLDA------------------KAADGN---------TALHYAALYNQ-PDCLKLLLKGRALVGT---VN 256 (301)
T ss_dssp HHHHHHHHSSCTTC------------------CCTTCC---------CHHHHHHHTTC-HHHHHHHHHTTCCCSC---CC
T ss_pred HHHHHHhcCCCCCC------------------CCCCCC---------CHHHHHHHcCC-HHHHHHHHHcCCCCCC---cC
Confidence 99999999999998 788885 78888889999 9999999999999999 99
Q ss_pred CCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCH
Q 039483 177 PMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNY 236 (360)
Q Consensus 177 ~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~ 236 (360)
..|.||||+|+..++. +++++|++.+ .+ .|.||||+|+.+|+.
T Consensus 257 ~~G~TpL~~A~~~~~~----------~iv~~Ll~~g-a~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 257 EAGETALDIARKKHHK----------ECEELLEQAQ-AG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp TTSCCHHHHHHHHTCH----------HHHHHHHHHH-HH------TTSSCCC--------
T ss_pred CCCCCHHHHHHHcCCH----------HHHHHHHHhc-CC------CCCChhHHHHhcCCc
Confidence 9999999999999999 9999999988 32 688999999998863
No 100
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.85 E-value=3.1e-21 Score=152.29 Aligned_cols=116 Identities=19% Similarity=0.110 Sum_probs=103.3
Q ss_pred CCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCccccccc
Q 039483 175 KAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKIDRTAAKIAD 254 (360)
Q Consensus 175 ~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d 254 (360)
.+..|.||||+|+..|+. +++++|++.+ .+++..|..|+||||+|+..|+.+++++|++.|+++ +.+|
T Consensus 3 ~~~~~~~~l~~A~~~~~~----------~~v~~ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d 70 (123)
T 3aaa_C 3 LGSMCDKEFMWALKNGDL----------DEVKDYVAKG-EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPD 70 (123)
T ss_dssp ----CHHHHHHHHHTTCH----------HHHHHHHHTT-CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCC
T ss_pred cccccchHHHHHHHcCCH----------HHHHHHHHcC-CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCC
Confidence 456789999999999999 9999999998 789999999999999999999999999999999999 9999
Q ss_pred cCCCCchhhhhhcCCccc-cccccc--ccCccCCCCCCcHHHHHHHcCCHHH
Q 039483 255 KDRKMTALHLVHGPKGCQ-NNMLAS--SLMDEGDAKGNTTVHFFAAVHRKEI 303 (360)
Q Consensus 255 ~~~g~tpLh~A~~~~~~~-~~~L~~--~~~~~~d~~g~Tpl~~A~~~~~~~i 303 (360)
. .|+||||+|+..++.+ +++|+. ++++.+|..|+||+|+|...+..++
T Consensus 71 ~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~l 121 (123)
T 3aaa_C 71 K-HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121 (123)
T ss_dssp T-TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred C-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHH
Confidence 9 9999999999999998 888884 8899999999999999954444433
No 101
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.85 E-value=8e-23 Score=192.26 Aligned_cols=112 Identities=16% Similarity=0.072 Sum_probs=53.8
Q ss_pred CHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCcccccc--ccC
Q 039483 144 IPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKG--IDQ 221 (360)
Q Consensus 144 t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~--~d~ 221 (360)
||||+|+..|+ .+++++|+++|+++......+.. .||||+|+..|+. +++++|++++ .+++. .|.
T Consensus 130 tpL~~Aa~~G~-~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~----------eiv~~Ll~~g-a~~~~~~~d~ 196 (376)
T 2aja_A 130 QAFRLAAENGH-LHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHL----------HVLNRLCELA-PTEATAMIQA 196 (376)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCH----------HHHHHHHHSC-GGGHHHHHHH
T ss_pred CHHHHHHHcCC-HHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCH----------HHHHHHHHcC-CccchhccCC
Confidence 45555555555 55555555555432110001111 5555555555555 5555555554 33333 444
Q ss_pred CCChHHHHHH-HcCCHHHHHHHHhcCCccccccccCCCCchhhhhhcCCccc-ccccc
Q 039483 222 CWWTPIHYAA-YHRNYLILKLILKIDRTAAKIADKDRKMTALHLVHGPKGCQ-NNMLA 277 (360)
Q Consensus 222 ~g~t~Lh~A~-~~~~~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~-~~~L~ 277 (360)
.|+||||+|+ ..|+.+++++|++.|. .|.||||+|+..++.+ +++|+
T Consensus 197 ~g~TpL~~Aa~~~G~~eiv~~Ll~~ga---------~~~taL~~Aa~~g~~evv~lL~ 245 (376)
T 2aja_A 197 ENYYAFRWAAVGRGHHNVINFLLDCPV---------MLAYAEIHEFEYGEKYVNPFIA 245 (376)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHTTSHH---------HHHHHHHCTTTTTTTTHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHhCCC---------ccchHHHHHHHCCCHHHHHHHH
Confidence 5555555555 5555555555554331 2445555555555555 44444
No 102
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.84 E-value=2.6e-21 Score=168.69 Aligned_cols=129 Identities=17% Similarity=0.090 Sum_probs=109.7
Q ss_pred cCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCC
Q 039483 143 KIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQC 222 (360)
Q Consensus 143 ~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~ 222 (360)
.||||+|+..|+ .+++++|++.|++++. +|..|.||||+|+..|+. +++++|++....+++..|..
T Consensus 74 ~t~L~~A~~~g~-~~~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~----------~~v~~Ll~~~g~~~~~~d~~ 139 (222)
T 3ehr_A 74 DNPLHEAAKRGN-LSWLRECLDNRVGVNG---LDKAGSTALYWACHGGHK----------DIVEMLFTQPNIELNQQNKL 139 (222)
T ss_dssp SCHHHHHHHHTC-HHHHHHHHHTTCCTTC---CCTTSCCHHHHHHHTTCH----------HHHHHHTTSTTCCCCCCCTT
T ss_pred ccccccccccCc-HHHHHHHHhCCCCccc---cCCCCCCHHHHHHHcCCH----------HHHHHHHcCCCCCccccCCC
Confidence 488899999999 9999999999999999 999999999999999999 99999999844889999999
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCccccccccCCCCchhhhhhcCCccc-cccccc--ccCccCCCC
Q 039483 223 WWTPIHYAAYHRNYLILKLILKIDRTAAKIADKDRKMTALHLVHGPKGCQ-NNMLAS--SLMDEGDAK 287 (360)
Q Consensus 223 g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~g~tpLh~A~~~~~~~-~~~L~~--~~~~~~d~~ 287 (360)
|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..+..+ ++.|++ +....++..
T Consensus 140 g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~-~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~ 205 (222)
T 3ehr_A 140 GDTALHAAAWKGYADIVQLLLAKGART-DLRNI-EKKLAFDMATNAACASLLKKKQGTDAVRTLSNAE 205 (222)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCT-TSCCHHHHCCSHHHHHHHC---------------
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccC-CCCCHHHHhcchhHHHHHHHHhccchhhhccchh
Confidence 999999999999999999999999999 99999 9999999999888777 777764 444444443
No 103
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=7.6e-20 Score=178.72 Aligned_cols=132 Identities=14% Similarity=0.054 Sum_probs=115.5
Q ss_pred CCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHh---cCCcHH
Q 039483 81 GDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAE---YEHSSH 157 (360)
Q Consensus 81 g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~---~g~~~~ 157 (360)
..+. ||.|+..|+.++++.|++.|++++.... ....|..|. ||||+|+. .|+ .+
T Consensus 132 ~~~~-L~~A~~~g~~~~v~~ll~~g~~~n~~~~------------~~~~~~~g~---------t~Lh~A~~~a~~g~-~~ 188 (497)
T 3lvq_E 132 EPQR-LWTAICNRDLLSVLEAFANGQDFGQPLP------------GPDAQAPEE---------LVLHLAVKVANQAS-LP 188 (497)
T ss_dssp CHHH-HHHHHHHTCHHHHHHHHHTTCCSSSCBC------------CSSSCCSCB---------CHHHHHHHTCCTTT-HH
T ss_pred cHHH-HHHHHhccCHHHHHHHHhhcccccCCCC------------Ccccccccc---------hHHHHHHHhccccc-HH
Confidence 3467 9999999999999999999999886100 001266775 66777754 889 99
Q ss_pred HHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHH
Q 039483 158 TVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYL 237 (360)
Q Consensus 158 ~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~ 237 (360)
++++|+++|++++. +|..|+||||+|+..|+. +++++|++++ ++++.+|..|+||||+|+..|+.+
T Consensus 189 ~v~~Ll~~ga~vn~---~d~~g~TpLh~A~~~g~~----------~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~ 254 (497)
T 3lvq_E 189 LVDFIIQNGGHLDA---KAADGNTALHYAALYNQP----------DCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKE 254 (497)
T ss_dssp HHHHHHHHSCCTTC---CCSSSCCHHHHHTTTTCH----------HHHHHHHHTC-CCCSCCCTTCCCHHHHHHHTTCHH
T ss_pred HHHHHHHcCCCCCc---cCCCCCcHHHHHHHcCCH----------HHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHH
Confidence 99999999999999 999999999999999999 9999999999 889999999999999999999999
Q ss_pred HHHHHHhcCCcc
Q 039483 238 ILKLILKIDRTA 249 (360)
Q Consensus 238 ~v~~Ll~~g~~~ 249 (360)
++++|+++|+++
T Consensus 255 ~~~~Ll~~ga~~ 266 (497)
T 3lvq_E 255 CEELLEQAQAGT 266 (497)
T ss_dssp HHHHHHHTCC--
T ss_pred HHHHHHHhCCCC
Confidence 999999999998
No 104
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.82 E-value=5.3e-20 Score=172.43 Aligned_cols=145 Identities=15% Similarity=0.081 Sum_probs=114.1
Q ss_pred CCCChHHHHHHhc-CCHHHHHHHHHhccccCcccccccccchhhHHHhhccc--CCCCchHHHhhhcCHHHHHHhcCCcH
Q 039483 80 KGDTRSRHVAAKF-DHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTN--KEKHTTLHEAYNKIPLCMAAEYEHSS 156 (360)
Q Consensus 80 ~g~tp~Lh~A~~~-g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d--~~g~t~Lh~a~~~t~L~~A~~~g~~~ 156 (360)
.+.|| ||.|+.. |+.+++++|+++|++++. .+ ..|. ||||+|+..|+ .
T Consensus 198 ~~~t~-L~~Aa~~~g~~~~v~~LL~~Gadvn~------------------~~~~~~g~---------TpLh~Aa~~g~-~ 248 (368)
T 3jue_A 198 HPGAL-LFRASGHPPSLPTMADALAHGADVNW------------------VNGGQDNA---------TPLIQATAANS-L 248 (368)
T ss_dssp CHHHH-HHHHTSSSCCHHHHHHHHHTTCCTTC------------------CCTTTTCC---------CHHHHHHHTTC-H
T ss_pred CCCcH-HHHHHHccCCHHHHHHHHHcCCCCCc------------------cccccCCC---------CHHHHHHHCCC-H
Confidence 34579 9999999 999999999999999987 55 6664 88888889999 9
Q ss_pred HHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCH
Q 039483 157 HTVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNY 236 (360)
Q Consensus 157 ~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~ 236 (360)
+++++|+++|++++. +|..|+||||+|+..|+. +++++|++++ ++++..|..|.||||+|+..++.
T Consensus 249 ~iv~~LL~~Gadvn~---~d~~G~TpLh~A~~~g~~----------~~v~~LL~~G-ad~~~~d~~G~TpL~~A~~~g~~ 314 (368)
T 3jue_A 249 LACEFLLQNGANVNQ---ADSAGRGPLHHATILGHT----------GLACLFLKRG-ADLGARDSEGRDPLTIAMETANA 314 (368)
T ss_dssp HHHHHHHHTTCCTTC---CCTTSCCHHHHHHHHTCH----------HHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCCCCC---CCCCCCCHHHHHHHcCcH----------HHHHHHHHCc-CCCCCcCCCCCCHHHHHHHCCCH
Confidence 999999999999999 999999999999999999 9999999998 88999999999999999999999
Q ss_pred HHHHHHHhcCCccc--cccccCCCCchhhhhhcC
Q 039483 237 LILKLILKIDRTAA--KIADKDRKMTALHLVHGP 268 (360)
Q Consensus 237 ~~v~~Ll~~g~~~~--~~~d~~~g~tpLh~A~~~ 268 (360)
+++++|++.+.... ...+. .+.|+++++...
T Consensus 315 ~iv~lLl~~~~~~~~~~~~~~-~~~t~l~i~~~~ 347 (368)
T 3jue_A 315 DIVTLLRLAKMREAEAAQGQA-GDETYLDIFRDF 347 (368)
T ss_dssp HHHHHHHHHHC-----------------------
T ss_pred HHHHHHHHcCCCcccccccCC-CCCCHHHHHHHH
Confidence 99999997663321 33444 677888777443
No 105
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.81 E-value=1.6e-19 Score=163.19 Aligned_cols=130 Identities=13% Similarity=0.052 Sum_probs=115.8
Q ss_pred CChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhc---CCcHHH
Q 039483 82 DTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEY---EHSSHT 158 (360)
Q Consensus 82 ~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~---g~~~~~ 158 (360)
.++ |+.|+..|+.+.++.+++.|++++.. .+++..|..|. ||||+|+.. |+ .++
T Consensus 131 l~~-l~~a~~~~d~~~~~~ll~~g~~~~~~------------~~l~~~~~~g~---------t~Lh~A~~~~~~~~-~~~ 187 (278)
T 1dcq_A 131 LHS-LCEAVKTRDIFGLLQAYADGVDLTEK------------IPLANGHEPDE---------TALHLAVRSVDRTS-LHI 187 (278)
T ss_dssp HHH-HHHHHHTTCHHHHHHHHHTTCCTTSB------------CCCSSCSSTTC---------BHHHHHHHHCCTTT-HHH
T ss_pred hhh-hhhHhhhcccHHHHHHHHhhcchhhh------------ccccccccCCC---------CcchHHHHhcccch-HHH
Confidence 468 99999999999999999999986641 11333577775 777777888 88 999
Q ss_pred HHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHcCCHHH
Q 039483 159 VVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYHRNYLI 238 (360)
Q Consensus 159 ~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~ 238 (360)
+++|+++|++++. +|..|+||||+|+..|+. +++++|++.+ ++++.+|..|.||||+|+..|+.++
T Consensus 188 v~~Ll~~ga~in~---~d~~g~TpLh~A~~~g~~----------~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~ 253 (278)
T 1dcq_A 188 VDFLVQNSGNLDK---QTGKGSTALHYCCLTDNA----------ECLKLLLRGK-ASIEIANESGETPLDIAKRLKHEHC 253 (278)
T ss_dssp HHHHHHHCSCTTC---CCTTCCCHHHHHHHTTCH----------HHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHCCCCccc---cCCCCCCHHHHHHHcCCH----------HHHHHHHHcC-CCCCCccCCCCCHHHHHHHcCCHHH
Confidence 9999999999999 999999999999999999 9999999998 8899999999999999999999999
Q ss_pred HHHHHhcCCc
Q 039483 239 LKLILKIDRT 248 (360)
Q Consensus 239 v~~Ll~~g~~ 248 (360)
+++|+++|++
T Consensus 254 v~~Ll~~ga~ 263 (278)
T 1dcq_A 254 EELLTQALSG 263 (278)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHcCCC
Confidence 9999999854
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.80 E-value=2.6e-19 Score=174.92 Aligned_cols=135 Identities=16% Similarity=0.144 Sum_probs=110.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCC------CCCCCChHHHHHHh---cCCHHH
Q 039483 27 PNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPV------TAKGDTRSRHVAAK---FDHCDI 97 (360)
Q Consensus 27 ~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~------~~~g~tp~Lh~A~~---~g~~~~ 97 (360)
..||.|+..|+.+.++.|++. +.++ +.+ |..|.|| ||+||. .|+.++
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~----------------------g~~~-n~~~~~~~~~~~g~t~-Lh~A~~~a~~g~~~~ 189 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFAN----------------------GQDF-GQPLPGPDAQAPEELV-LHLAVKVANQASLPL 189 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHT----------------------TCCS-SSCBCCSSSCCSCBCH-HHHHHHTCCTTTHHH
T ss_pred HHHHHHHhccCHHHHHHHHhh----------------------cccc-cCCCCCcccccccchH-HHHHHHhcccccHHH
Confidence 579999999999999999985 3333 433 7889999 999966 999999
Q ss_pred HHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCC
Q 039483 98 VSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAP 177 (360)
Q Consensus 98 v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~ 177 (360)
|++|+++|++++. +|..|+ ||||+|+..|+ .+++++|+++|++++. +|.
T Consensus 190 v~~Ll~~ga~vn~------------------~d~~g~---------TpLh~A~~~g~-~~~v~~Ll~~ga~~~~---~d~ 238 (497)
T 3lvq_E 190 VDFIIQNGGHLDA------------------KAADGN---------TALHYAALYNQ-PDCLKLLLKGRALVGT---VNE 238 (497)
T ss_dssp HHHHHHHSCCTTC------------------CCSSSC---------CHHHHHTTTTC-HHHHHHHHHTCCCCSC---CCT
T ss_pred HHHHHHcCCCCCc------------------cCCCCC---------cHHHHHHHcCC-HHHHHHHHHcCCCCCC---cCC
Confidence 9999999999998 888886 77788888999 9999999999999999 999
Q ss_pred CCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChHHHHHHHc
Q 039483 178 MERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTPIHYAAYH 233 (360)
Q Consensus 178 ~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~Lh~A~~~ 233 (360)
.|.||||+|+..|+. +++++|++++ ++++. +|+|.+..+
T Consensus 239 ~g~tpl~~A~~~~~~----------~~~~~Ll~~g-a~~~~------~~~h~~~~~ 277 (497)
T 3lvq_E 239 AGETALDIARKKHHK----------ECEELLEQAQ-AGTFA------FPLHVDYSW 277 (497)
T ss_dssp TCCCHHHHHHHTTCH----------HHHHHHHHTC-C-------------------
T ss_pred CCCCHHHHHHHcCCH----------HHHHHHHHhC-CCCCC------Ccceeeccc
Confidence 999999999999999 9999999999 65554 577766543
No 107
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.79 E-value=6.1e-19 Score=165.25 Aligned_cols=159 Identities=14% Similarity=0.019 Sum_probs=112.9
Q ss_pred CCHHHHHHHHc-CChHHHHHHHHHHHhhhhcccCCccccccccccccccccCCCC--CCCCChHHHHHHhcCCHHHHHHH
Q 039483 25 IDPNLFKVAAA-GNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQKMCQPVT--AKGDTRSRHVAAKFDHCDIVSVL 101 (360)
Q Consensus 25 ~~~~L~~Aa~~-G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~~~~~~~--~~g~tp~Lh~A~~~g~~~~v~~L 101 (360)
..++||.|+.. |+++.++.|++. +.++ +..+ ..|.|| ||+|+..|+.++|++|
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~----------------------Gadv-n~~~~~~~g~Tp-Lh~Aa~~g~~~iv~~L 254 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAH----------------------GADV-NWVNGGQDNATP-LIQATAANSLLACEFL 254 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHT----------------------TCCT-TCCCTTTTCCCH-HHHHHHTTCHHHHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHHc----------------------CCCC-CccccccCCCCH-HHHHHHCCCHHHHHHH
Confidence 34699999999 999999999884 5666 7777 889999 9999999999999999
Q ss_pred HHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCc
Q 039483 102 IERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQ 181 (360)
Q Consensus 102 l~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t 181 (360)
+++|++++. .|..|. ||||+|+..|+ .+++++|+++|++++. +|..|.|
T Consensus 255 L~~Gadvn~------------------~d~~G~---------TpLh~A~~~g~-~~~v~~LL~~Gad~~~---~d~~G~T 303 (368)
T 3jue_A 255 LQNGANVNQ------------------ADSAGR---------GPLHHATILGH-TGLACLFLKRGADLGA---RDSEGRD 303 (368)
T ss_dssp HHTTCCTTC------------------CCTTSC---------CHHHHHHHHTC-HHHHHHHHHTTCCTTC---CCTTSCC
T ss_pred HHcCCCCCC------------------CCCCCC---------CHHHHHHHcCc-HHHHHHHHHCcCCCCC---cCCCCCC
Confidence 999999998 788885 78888889999 9999999999999999 9999999
Q ss_pred HHHHHHhcCCcccccccCChHHHHHHHHhcCcc--ccccccCCCChHHHHHHHcCC--HHHHHHHHhcCCc
Q 039483 182 ALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKS--MIKGIDQCWWTPIHYAAYHRN--YLILKLILKIDRT 248 (360)
Q Consensus 182 ~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~--~i~~~d~~g~t~Lh~A~~~~~--~~~v~~Ll~~g~~ 248 (360)
|||+|+..++. +++++|+..+.. .....+..+.|+++++..... .+-.+.|..++.+
T Consensus 304 pL~~A~~~g~~----------~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~~~~~~~ekl~r~~~~ 364 (368)
T 3jue_A 304 PLTIAMETANA----------DIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSRRSHD 364 (368)
T ss_dssp HHHHHHHTTCH----------HHHHHHHHHHC---------------------------------------
T ss_pred HHHHHHHCCCH----------HHHHHHHHcCCCcccccccCCCCCCHHHHHHHHHhhcCCCHHHHHhcCCC
Confidence 99999999999 999999977622 223445677888888766543 2333444444443
No 108
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.79 E-value=8.2e-19 Score=158.51 Aligned_cols=127 Identities=10% Similarity=0.085 Sum_probs=113.1
Q ss_pred CHHHHHHHHcCChHHHHHHHHHHHhhhhcccCCcccccccccccccc-ccCCCCCCCCChHHHHHHhc---CCHHHHHHH
Q 039483 26 DPNLFKVAAAGNLEPFKDMAREVIESLLTARSRTQSCISTSNCRRQK-MCQPVTAKGDTRSRHVAAKF---DHCDIVSVL 101 (360)
Q Consensus 26 ~~~L~~Aa~~G~~~~~~~ll~~~~~~~~~~~~~t~~~v~l~~~~~~~-~~~~~~~~g~tp~Lh~A~~~---g~~~~v~~L 101 (360)
.++|+.|+..|+++.++.+++.+.+.. ... + +..|..|.|| ||+|+.. |+.+++++|
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~-----------------~~~~l-~~~~~~g~t~-Lh~A~~~~~~~~~~~v~~L 191 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLT-----------------EKIPL-ANGHEPDETA-LHLAVRSVDRTSLHIVDFL 191 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTT-----------------SBCCC-SSCSSTTCBH-HHHHHHHCCTTTHHHHHHH
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchh-----------------hhccc-cccccCCCCc-chHHHHhcccchHHHHHHH
Confidence 368999999999999999988543321 222 5 6678899999 9999999 899999999
Q ss_pred HHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCc
Q 039483 102 IERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQ 181 (360)
Q Consensus 102 l~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t 181 (360)
+++|++++. +|..|. ||||+|+..|+ .+++++|+++|++++. +|..|.|
T Consensus 192 l~~ga~in~------------------~d~~g~---------TpLh~A~~~g~-~~~v~~Ll~~gad~~~---~d~~g~t 240 (278)
T 1dcq_A 192 VQNSGNLDK------------------QTGKGS---------TALHYCCLTDN-AECLKLLLRGKASIEI---ANESGET 240 (278)
T ss_dssp HHHCSCTTC------------------CCTTCC---------CHHHHHHHTTC-HHHHHHHHHTTCCTTC---CCTTSCC
T ss_pred HHCCCCccc------------------cCCCCC---------CHHHHHHHcCC-HHHHHHHHHcCCCCCC---ccCCCCC
Confidence 999999998 888885 78888899999 9999999999999999 9999999
Q ss_pred HHHHHHhcCCcccccccCChHHHHHHHHhcC
Q 039483 182 ALHAATMHIDLCKFNHTLSNDCAVQQLFEGK 212 (360)
Q Consensus 182 ~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~ 212 (360)
|||+|+..|+. +++++|++++
T Consensus 241 pL~~A~~~~~~----------~~v~~Ll~~g 261 (278)
T 1dcq_A 241 PLDIAKRLKHE----------HCEELLTQAL 261 (278)
T ss_dssp HHHHHHHTTCH----------HHHHHHHHHH
T ss_pred HHHHHHHcCCH----------HHHHHHHHcC
Confidence 99999999999 9999999987
No 109
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.79 E-value=6.9e-19 Score=131.67 Aligned_cols=91 Identities=29% Similarity=0.354 Sum_probs=87.2
Q ss_pred cCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCC
Q 039483 143 KIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQC 222 (360)
Q Consensus 143 ~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~ 222 (360)
+||||+|+..|+ .+++++|++.|++++. +|..|.||||+|+..++. +++++|++.+ .+++.+|..
T Consensus 3 ~t~L~~A~~~~~-~~~v~~Ll~~g~~~n~---~d~~g~t~L~~A~~~~~~----------~~v~~Ll~~g-a~~~~~d~~ 67 (93)
T 1n0q_A 3 RTPLHLAARNGH-LEVVKLLLEAGADVNA---KDKNGRTPLHLAARNGHL----------EVVKLLLEAG-ADVNAKDKN 67 (93)
T ss_dssp CCHHHHHHHHTC-HHHHHHHHHTTCCTTC---CCTTSCCHHHHHHHTTCH----------HHHHHHHHTT-CCTTCCCTT
T ss_pred CcHHHHHHHcCC-HHHHHHHHHcCCCCcc---cCCCCCCHHHHHHHcCCH----------HHHHHHHHcC-CCCCccCCC
Confidence 489999999999 9999999999999999 999999999999999999 9999999998 889999999
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCc
Q 039483 223 WWTPIHYAAYHRNYLILKLILKIDRT 248 (360)
Q Consensus 223 g~t~Lh~A~~~~~~~~v~~Ll~~g~~ 248 (360)
|+||||+|+..|+.+++++|+++|++
T Consensus 68 g~t~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 68 GRTPLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999999999974
No 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.78 E-value=9.8e-19 Score=130.83 Aligned_cols=91 Identities=31% Similarity=0.391 Sum_probs=84.6
Q ss_pred CCCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCCcHHHH
Q 039483 80 KGDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEHSSHTV 159 (360)
Q Consensus 80 ~g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~ 159 (360)
+|.|| ||+|+..|+.+++++|+++|++++. +|..|. ||||+|+..|+ .+++
T Consensus 1 ~g~t~-L~~A~~~~~~~~v~~Ll~~g~~~n~------------------~d~~g~---------t~L~~A~~~~~-~~~v 51 (93)
T 1n0q_A 1 NGRTP-LHLAARNGHLEVVKLLLEAGADVNA------------------KDKNGR---------TPLHLAARNGH-LEVV 51 (93)
T ss_dssp --CCH-HHHHHHHTCHHHHHHHHHTTCCTTC------------------CCTTSC---------CHHHHHHHTTC-HHHH
T ss_pred CCCcH-HHHHHHcCCHHHHHHHHHcCCCCcc------------------cCCCCC---------CHHHHHHHcCC-HHHH
Confidence 48999 9999999999999999999999988 788885 78888889999 9999
Q ss_pred HHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcC
Q 039483 160 VAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGK 212 (360)
Q Consensus 160 ~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~ 212 (360)
++|+++|++++. +|..|.||||+|+..|+. +++++|++.+
T Consensus 52 ~~Ll~~ga~~~~---~d~~g~t~l~~A~~~~~~----------~~~~~Ll~~g 91 (93)
T 1n0q_A 52 KLLLEAGADVNA---KDKNGRTPLHLAARNGHL----------EVVKLLLEAG 91 (93)
T ss_dssp HHHHHTTCCTTC---CCTTSCCHHHHHHHTTCH----------HHHHHHHHTT
T ss_pred HHHHHcCCCCCc---cCCCCCCHHHHHHHcCCH----------HHHHHHHHcC
Confidence 999999999999 999999999999999999 9999999887
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.78 E-value=4.8e-19 Score=137.80 Aligned_cols=109 Identities=21% Similarity=0.152 Sum_probs=99.4
Q ss_pred CCCCCCCCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHHHhcCC
Q 039483 75 QPVTAKGDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMAAEYEH 154 (360)
Q Consensus 75 ~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A~~~g~ 154 (360)
..+|.+|.|| ||+||..|+.+++++|+++|++++. +|..|. ||||+|+..|+
T Consensus 3 ~~~d~~g~t~-L~~A~~~~~~~~~~~Ll~~g~~~~~------------------~d~~g~---------t~L~~A~~~~~ 54 (115)
T 2l6b_A 3 MWGSKDGNTP-LHNAAKNGHAEEVKKLLSKGADVNA------------------RSKDGN---------TPLHLAAKNGH 54 (115)
T ss_dssp -CCSCSSCCH-HHHHHHHTCHHHHHHHTTTTCCSSC------------------CCSSSC---------CTTHHHHTTTC
T ss_pred cccCCCCCCH-HHHHHHcCCHHHHHHHHHcCCCCCC------------------cCCCCC---------CHHHHHHHcCc
Confidence 3578999999 9999999999999999999999888 788885 77788888999
Q ss_pred cHHHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCCCChH
Q 039483 155 SSHTVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQCWWTP 226 (360)
Q Consensus 155 ~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~g~t~ 226 (360)
.+++++|+++|++++. +|..|.||||+|+..++. +++++|++++ ++++..+..|.+|
T Consensus 55 -~~~~~~Ll~~g~~~~~---~d~~g~tpl~~A~~~~~~----------~~~~~Ll~~g-a~~n~~~~~~~~~ 111 (115)
T 2l6b_A 55 -AEIVKLLLAKGADVNA---RSKDGNTPEHLAKKNGHH----------EIVKLLDAKG-ADVNARSWGSSHH 111 (115)
T ss_dssp -HHHHHHHTTTTCCTTC---CCTTCCCTTHHHHTTTCH----------HHHHHHHTTS-SSHHHHSCCCC--
T ss_pred -HHHHHHHHHcCCCCcc---cCCCCCCHHHHHHHCCCH----------HHHHHHHHcC-CCCCcCCcccccc
Confidence 9999999999999999 999999999999999999 9999999999 8899999999887
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.77 E-value=5.9e-19 Score=137.30 Aligned_cols=108 Identities=19% Similarity=0.144 Sum_probs=98.7
Q ss_pred ccCCCCchHHHhhhcCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHH
Q 039483 129 TNKEKHTTLHEAYNKIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQL 208 (360)
Q Consensus 129 ~d~~g~t~Lh~a~~~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~L 208 (360)
+|.+|. ||||+|+..|+ .+++++|+++|++++. +|..|.||||+|+..++. +++++|
T Consensus 5 ~d~~g~---------t~L~~A~~~~~-~~~~~~Ll~~g~~~~~---~d~~g~t~L~~A~~~~~~----------~~~~~L 61 (115)
T 2l6b_A 5 GSKDGN---------TPLHNAAKNGH-AEEVKKLLSKGADVNA---RSKDGNTPLHLAAKNGHA----------EIVKLL 61 (115)
T ss_dssp CSCSSC---------CHHHHHHHHTC-HHHHHHHTTTTCCSSC---CCSSSCCTTHHHHTTTCH----------HHHHHH
T ss_pred cCCCCC---------CHHHHHHHcCC-HHHHHHHHHcCCCCCC---cCCCCCCHHHHHHHcCcH----------HHHHHH
Confidence 567774 88888899999 9999999999999999 999999999999999999 999999
Q ss_pred HhcCccccccccCCCChHHHHHHHcCCHHHHHHHHhcCCccccccccCCCCchh
Q 039483 209 FEGKKSMIKGIDQCWWTPIHYAAYHRNYLILKLILKIDRTAAKIADKDRKMTAL 262 (360)
Q Consensus 209 l~~~~~~i~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~~g~tpL 262 (360)
++.+ .+++.+|..|+||||+|+..++.+++++|+++|+++ +.++. .|.+|-
T Consensus 62 l~~g-~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~-n~~~~-~~~~~~ 112 (115)
T 2l6b_A 62 LAKG-ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV-NARSW-GSSHHH 112 (115)
T ss_dssp TTTT-CCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSH-HHHSC-CCC---
T ss_pred HHcC-CCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCc-cccccc
Confidence 9998 889999999999999999999999999999999999 99998 888874
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.67 E-value=1.7e-16 Score=122.52 Aligned_cols=96 Identities=18% Similarity=0.160 Sum_probs=82.9
Q ss_pred cccccCCCCCCCCChHHHHHHhcCCHHHHHHHHHhccccCcccccccccchhhHHHhhcccCCCCchHHHhhhcCHHHHH
Q 039483 70 RQKMCQPVTAKGDTRSRHVAAKFDHCDIVSVLIERAKLVQHEDEELESGVGASRQMIRMTNKEKHTTLHEAYNKIPLCMA 149 (360)
Q Consensus 70 ~~~~~~~~~~~g~tp~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~l~~~d~~g~t~Lh~a~~~t~L~~A 149 (360)
+... ...|.+|.|| ||+|+..|+.+++++|++.|++++. +|..|. ||||+|
T Consensus 14 ~~~~-~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~g~~i~~------------------~d~~g~---------tpLh~A 64 (110)
T 2zgd_A 14 VPRG-SHMGSDLGKK-LLEAARAGQDDEVRILMANGADVAA------------------KDKNGS---------TPLHLA 64 (110)
T ss_dssp ---------CCHHHH-HHHHHHHTCHHHHHHHHHTTCCTTC------------------CCTTCC---------CHHHHH
T ss_pred CCcc-cccCCccchH-HHHHHHcCCHHHHHHHHHcCCCCCc------------------cCCCCC---------CHHHHH
Confidence 4455 7788999999 9999999999999999999999988 788885 888888
Q ss_pred HhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHH
Q 039483 150 AEYEHSSHTVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQL 208 (360)
Q Consensus 150 ~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~L 208 (360)
+..|+ .+++++|+++|++++. +|..|.||||+|+..|+. +++++|
T Consensus 65 ~~~~~-~~~v~~Ll~~ga~~~~---~d~~g~tpl~~A~~~~~~----------~~~~~L 109 (110)
T 2zgd_A 65 ARNGH-LEVVKLLLEAGADVXA---QDKFGKTAFDISIDNGNE----------DLAEIL 109 (110)
T ss_dssp HHTTC-HHHHHHHHHTTCCTTC---CCTTSCCHHHHHHHHTCH----------HHHHHH
T ss_pred HHcCC-HHHHHHHHHcCCCccc---cccCCCcHHHHHHHcCCH----------HHHHHh
Confidence 99999 9999999999999999 999999999999999999 999876
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.63 E-value=8.9e-16 Score=118.42 Aligned_cols=85 Identities=19% Similarity=0.136 Sum_probs=77.4
Q ss_pred cCHHHHHHhcCCcHHHHHHHHhhCCCCCccccCCCCCCcHHHHHHhcCCcccccccCChHHHHHHHHhcCccccccccCC
Q 039483 143 KIPLCMAAEYEHSSHTVVAILKSCTSVSHIYMKAPMERQALHAATMHIDLCKFNHTLSNDCAVQQLFEGKKSMIKGIDQC 222 (360)
Q Consensus 143 ~t~L~~A~~~g~~~~~~~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~~~~~~~~~Ll~~~~~~i~~~d~~ 222 (360)
.||||+|+..|+ .+++++|++.|++++. +|..|.||||+|+..|+. +++++|++.+ .+++.+|..
T Consensus 25 ~t~L~~A~~~g~-~~~v~~Ll~~g~~i~~---~d~~g~tpLh~A~~~~~~----------~~v~~Ll~~g-a~~~~~d~~ 89 (110)
T 2zgd_A 25 GKKLLEAARAGQ-DDEVRILMANGADVAA---KDKNGSTPLHLAARNGHL----------EVVKLLLEAG-ADVXAQDKF 89 (110)
T ss_dssp HHHHHHHHHHTC-HHHHHHHHHTTCCTTC---CCTTCCCHHHHHHHTTCH----------HHHHHHHHTT-CCTTCCCTT
T ss_pred chHHHHHHHcCC-HHHHHHHHHcCCCCCc---cCCCCCCHHHHHHHcCCH----------HHHHHHHHcC-CCccccccC
Confidence 478888888999 9999999999999998 899999999999999999 9999999998 788899999
Q ss_pred CChHHHHHHHcCCHHHHHHH
Q 039483 223 WWTPIHYAAYHRNYLILKLI 242 (360)
Q Consensus 223 g~t~Lh~A~~~~~~~~v~~L 242 (360)
|+||||+|+..|+.+++++|
T Consensus 90 g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 90 GKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp SCCHHHHHHHHTCHHHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHh
Confidence 99999999999999999876
No 115
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=54.94 E-value=10 Score=21.96 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=18.4
Q ss_pred CCHHHHHHHHcCChHHHHHHHH
Q 039483 25 IDPNLFKVAAAGNLEPFKDMAR 46 (360)
Q Consensus 25 ~~~~L~~Aa~~G~~~~~~~ll~ 46 (360)
++..++.|++.||.+.++.|-.
T Consensus 13 iEQqiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 13 IRKQMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHH
Confidence 4567999999999999998843
No 116
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=29.33 E-value=22 Score=33.80 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=15.5
Q ss_pred HHHHHHHcCChHHHHHHHHH
Q 039483 28 NLFKVAAAGNLEPFKDMARE 47 (360)
Q Consensus 28 ~L~~Aa~~G~~~~~~~ll~~ 47 (360)
.|-..++.|+++....+++.
T Consensus 32 ~id~c~k~G~~~~A~~lf~~ 51 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDE 51 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 35667789999888888874
Done!