BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039488
(356 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 161/341 (47%), Gaps = 33/341 (9%)
Query: 1 NDEGAEYVEALANGFLFEYLQ------KPDQNLLRDFHPFNYVESPAASNGCPMLRVQAT 54
ND G +VEA L + +Q K DQ L +P +E + P L V+ +
Sbjct: 90 NDSGVPFVEARVQAQLSQAIQNVVELEKLDQYLPSAAYPGGKIE---VNEDVP-LAVKIS 145
Query: 55 FFKCGGLAITVCTCHKLIDGASLRIFVDSWATTARADNQLSGSSNNKEVTPRF-VTSTIF 113
FF+CGG AI V HK+ D SL F+++W T R + ++ V P F + + F
Sbjct: 146 FFECGGTAIGVNLSHKIADVLSLATFLNAWTATCRGETEI--------VLPNFDLAARHF 197
Query: 114 PASESFVAAPSHI--SPVKANRFVFDAKKIDELKAKVASPTVPRP-TRVEALTALIWKCA 170
P ++ +P + V RFVFD +KI L+A+ +S + + +RV+ + A IWK
Sbjct: 198 PPVDN-TPSPELVPDENVVMKRFVFDKEKIGALRAQASSASEEKNFSRVQLVVAYIWKHV 256
Query: 171 RAASRSNLGYSRPSLSVQAIDVRAVAEPPLPDNSVGNSVAYLTAQASEKETETLQDLVCS 230
+R+ G + VQA+++R+ PPLP ++GN L A + + DL+
Sbjct: 257 IDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHYAMGNIATLLFAAVDAEWDKDFPDLIGP 316
Query: 231 LRKAKAEFRRNGLKTLLKNKSIFDIPESIKDKFEKDEIDFYTFSSLVNFPYYEVADFGWG 290
LR + + + LLK + +E + + +F+S +Y++ DFGWG
Sbjct: 317 LRTSLEKTEDDHNHELLKGMTCL---------YELEPQELLSFTSWCRLGFYDL-DFGWG 366
Query: 291 KPVHMTMPNYWVSNLIIIMAANDAKGIEVWVTLSPEDMAFF 331
KP+ + N ++M G+E W+ ++ ++MA
Sbjct: 367 KPLSACTTTFPKRNAALLMDTRSGDGVEAWLPMAEDEMAML 407
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 142/350 (40%), Gaps = 26/350 (7%)
Query: 1 NDEGAEYVEALANGFLFEYLQ-KPDQNLLRDFHPFNYVESPAASNGCPMLRVQATFFKCG 59
N EG +VEA ++G + ++ P L R +Y + ++ +L +Q T+FKCG
Sbjct: 92 NGEGVLFVEAESDGVVDDFGDFAPTLELRRLIPAVDYSQGISSYA---LLVLQVTYFKCG 148
Query: 60 GLAITVCTCHKLIDGASLRIFVDSWATTARA---------DNQLSGSSNNKEVTPRFVTS 110
G+++ V H DG S F++SW+ AR D L + + + P+F
Sbjct: 149 GVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVTLPPFIDRTLLRARDPPQ--PQFQHI 206
Query: 111 TIFP----ASESFVAAPSHISPVKANRFVFDAKKIDELKAKVA-SPTVPRPTRVEALTAL 165
P A AA + + F ++I LKAK + E L
Sbjct: 207 EYQPPPALAVSPQTAASDSVPETAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGH 266
Query: 166 IWKCARAASRSNLGYSRPSLSVQAIDVRAVAEPPLPDNSVGNSVAYLT--AQASEKETET 223
+W+CA A L + + A D RA P LP GN + T A A + E +
Sbjct: 267 VWRCACKA--RGLEVDQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKP 324
Query: 224 LQDLVCSLRKAKAEFRRNGLKTLLKNKSIFDIPESIKDKFEKDEIDFYTFSSLVNFPYYE 283
+ + A A + L++ L + +++ + +S V P ++
Sbjct: 325 VWYAASKIHDALARMDNDYLRSALDYLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHD 384
Query: 284 VADFGWGKPVHMTMPNYWVSNLIIIMAANDAKG-IEVWVTLSPEDMAFFE 332
ADFGWG+P+ M L I+ + G + V ++L E M F+
Sbjct: 385 -ADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQ 433
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 143/358 (39%), Gaps = 42/358 (11%)
Query: 1 NDEGAEYVEALANGFLFEYLQ-KPDQNLLRDFHPFNYVESPAASNGCPMLRVQATFFKCG 59
N EG +VEA ++G + ++ P L R +Y + ++ +L +Q T+FKCG
Sbjct: 89 NGEGVLFVEAESDGVVDDFGDFAPTLELRRLIPAVDYSQGISSYA---LLVLQVTYFKCG 145
Query: 60 GLAITVCTCHKLIDGASLRIFVDSWATTARADNQLSGSSNNKEVT-PRFVTSTIFPASES 118
G+++ V H DG S F++SW+ AR +VT P F+ T+ A +
Sbjct: 146 GVSLGVGMRHHAADGFSGLHFINSWSDMARG----------LDVTLPPFIDRTLLRARDP 195
Query: 119 FVAAPSHI----------SPVKANR----------FVFDAKKIDELKAKVA-SPTVPRPT 157
HI SP A F ++I LKAK +
Sbjct: 196 PQPQFQHIEYQPPPALKVSPQTAKSDSVPETAVSIFKLTREQISALKAKSKEDGNTISYS 255
Query: 158 RVEALTALIWKCARAASRSNLGYSRPSLSVQAIDVRAVAEPPLPDNSVGNSVAYLT--AQ 215
E L +W+CA A L + + A D RA P LP GN + T A
Sbjct: 256 SYEMLAGHVWRCACKA--RGLEVDQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAI 313
Query: 216 ASEKETETLQDLVCSLRKAKAEFRRNGLKTLLKNKSIFDIPESIKDKFEKDEIDFYTFSS 275
A + E + + + A A + L++ L + +++ + +S
Sbjct: 314 AGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPDLKALVRGAHTFKCPNLGITS 373
Query: 276 LVNFPYYEVADFGWGKPVHMTMPNYWVSNLIIIMAANDAKG-IEVWVTLSPEDMAFFE 332
V P ++ ADFGWG+P+ M L I+ + G + V ++L E M F+
Sbjct: 374 WVRLPIHD-ADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQ 430
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 85/350 (24%), Positives = 141/350 (40%), Gaps = 26/350 (7%)
Query: 1 NDEGAEYVEALANGFLFEYLQ-KPDQNLLRDFHPFNYVESPAASNGCPMLRVQATFFKCG 59
N EG +VEA ++G + ++ P L R +Y + ++ +L +Q T+FK G
Sbjct: 92 NGEGVLFVEAESDGVVDDFGDFAPTLELRRLIPAVDYSQGISS---YALLVLQVTYFKXG 148
Query: 60 GLAITVCTCHKLIDGASLRIFVDSWATTARA---------DNQLSGSSNNKEVTPRFVTS 110
G+++ V H DG S F++SW+ AR D L + + + P+F
Sbjct: 149 GVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVTLPPFIDRTLLRARDPPQ--PQFQHI 206
Query: 111 TIFP----ASESFVAAPSHISPVKANRFVFDAKKIDELKAKVA-SPTVPRPTRVEALTAL 165
P A AA + + F ++I LKAK + E L
Sbjct: 207 EYQPPPALAVSPQTAASDSVPETAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGH 266
Query: 166 IWKCARAASRSNLGYSRPSLSVQAIDVRAVAEPPLPDNSVGNSVAYLT--AQASEKETET 223
+W+CA A L + + A D RA P LP GN + T A A + E +
Sbjct: 267 VWRCACKA--RGLEVDQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKP 324
Query: 224 LQDLVCSLRKAKAEFRRNGLKTLLKNKSIFDIPESIKDKFEKDEIDFYTFSSLVNFPYYE 283
+ + A A + L++ L + +++ + +S V P ++
Sbjct: 325 VWYAASKIHDALARMDNDYLRSALDYLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHD 384
Query: 284 VADFGWGKPVHMTMPNYWVSNLIIIMAANDAKG-IEVWVTLSPEDMAFFE 332
ADFGWG+P+ M L I+ + G + V ++L E M F+
Sbjct: 385 -ADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQ 433
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 127/306 (41%), Gaps = 32/306 (10%)
Query: 47 PMLRVQATFFKCGGLAITVCTCHKLIDGASLRIFVDSWATTARADNQLSG--SSNNKEVT 104
P+ VQ T F G+AI + H L D ++ F+ +W + AR+ N ++ + +
Sbjct: 148 PLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGNNDESFLANGTRPLY 207
Query: 105 PRFVTSTIFPAS-------ESF--------VAAPSHISPVKANRFVFDAKKIDELKAKVA 149
R + + + ESF +A PS ++A F+ I++LK +V
Sbjct: 208 DRIIKYPMLDEAYLKRAKVESFNEDYVTQSLAGPS--DKLRAT-FILTRAVINQLKDRVL 264
Query: 150 S--PTVPRPTRVEALTALIWKCARAASRSNLGYSRPSLSVQAIDVRAVAEPPLPDNSVGN 207
+ PT+ + A IW C A SR++ + L ID RA +PP+P GN
Sbjct: 265 AQLPTLEYVSSFTVACAYIWSCI-AKSRND----KLQLFGFPIDRRARMKPPIPTAYFGN 319
Query: 208 SVAYLTAQASEKETETLQDLVCSLRKAKAEFRRNGLKTLLKNKSIFDIPESIKDKFEKDE 267
V A A + + + + + T K+ + D ES D +
Sbjct: 320 CVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKT--LTDYKDGVLKDDMESFNDLVSEGM 377
Query: 268 IDFYTF-SSLVNFPYYEVADFGWGKPVHMTMPNYWVSNLIIIMAANDA-KGIEVWVTLSP 325
T+ S +Y++ DFGWGKP + + + I I + ++ + +E+ V +S
Sbjct: 378 PTTMTWVSGTPKLRFYDM-DFGWGKPKKLETVSIDHNGAISINSCKESNEDLEIGVCISA 436
Query: 326 EDMAFF 331
M F
Sbjct: 437 TQMEDF 442
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 106/265 (40%), Gaps = 29/265 (10%)
Query: 47 PMLRVQATFFKCGGLAITVCTCHKLIDGASLRIFVDSWATTARADNQLSG--SSNNKEVT 104
P+ VQ T F G+AI + H L D ++ F+ +W + AR+ N ++ + +
Sbjct: 148 PLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGNNDESFLANGTRPLY 207
Query: 105 PRFVTSTIFPAS-------ESF--------VAAPSHISPVKANRFVFDAKKIDELKAKVA 149
R + + ESF +A PS ++A F+ I++LK +V
Sbjct: 208 DRIIKYPXLDEAYLKRAKVESFNEDYVTQSLAGPS--DKLRAT-FILTRAVINQLKDRVL 264
Query: 150 S--PTVPRPTRVEALTALIWKCARAASRSNLGYSRPSLSVQAIDVRAVAEPPLPDNSVGN 207
+ PT+ + A IW C A SR++ + L ID RA +PP+P GN
Sbjct: 265 AQLPTLEYVSSFTVACAYIWSCI-AKSRND----KLQLFGFPIDRRARXKPPIPTAYFGN 319
Query: 208 SVAYLTAQASEKETETLQDLVCSLRKAKAEFRRNGLKTLLKNKSIFDIPESIKDKFEKDE 267
V A A + + + + + T K+ + D ES D +
Sbjct: 320 CVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKT--LTDYKDGVLKDDXESFNDLVSEGX 377
Query: 268 IDFYTFSSLVNFPYYEVADFGWGKP 292
T+ S + DFGWGKP
Sbjct: 378 PTTXTWVSGTPKLRFYDXDFGWGKP 402
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 120/303 (39%), Gaps = 44/303 (14%)
Query: 24 DQNLLRDFHPFN---------YVESPAASNGC---PMLRVQATFFKCGGLAITVCTCHKL 71
D N L +HP N + P + G P+L +Q T F G++I H
Sbjct: 108 DFNYLIGYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVA 167
Query: 72 IDGASLRIFVDSWATTAR--ADNQLSGSS----NNKEVT--PRFVTSTIFPASESF---V 120
DGA++ FV +WA + D Q + ++ V P V +I+ + +
Sbjct: 168 GDGATIVKFVRAWALLNKFGGDEQFLANEFIPFYDRSVIKDPNGVGXSIWNEXKKYKHXX 227
Query: 121 AAPSHISPVKANR--FVFDAKKIDELKAKVASPTVPRPTRVEALT---ALIWKC---ARA 172
++P R F+ I +LK V + P+ T V + T A +W C + A
Sbjct: 228 KXSDVVTPPDKVRGTFIITRHDIGKLKNLVLTRR-PKLTHVTSFTVTCAYVWTCIIKSEA 286
Query: 173 ASRSNLGYSRPSLSVQAIDVRAVAEPPLPDNSVGNSVAYLTAQASEKETETLQDLVCSLR 232
A+ + + A D RA PPLP + GN++ A+ + + + ++
Sbjct: 287 ATGEEIDENGXEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIAVE 346
Query: 233 KAKAEFR-RNGLKTLLKNKSIFDIPESIKDKFEKDEIDFYTFSSLVNFPYYEV--ADFGW 289
R R + + + S F E D++D S+ P ++ ADFGW
Sbjct: 347 LIGEAIRKRXKDEEWILSGSWFK---------EYDKVDAKRSLSVAGSPKLDLYAADFGW 397
Query: 290 GKP 292
G+P
Sbjct: 398 GRP 400
>pdb|2RKV|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And T-2 Mycotoxin
pdb|3B2S|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And Deoxynivalenol
pdb|3B30|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Ethyl Coenzyme A
Length = 451
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 129/323 (39%), Gaps = 38/323 (11%)
Query: 47 PMLRVQATFFKCGGLAITVCTCHKLID----GASLRIFVDSWATTARADNQLSGSS-NNK 101
P++ +Q F K GGL +TV H +D A +R+ + + +++ + + K
Sbjct: 135 PVILLQLNFIK-GGLILTVNGQHGAMDMVGQDAVIRLLSKACRNDPFTEEEMTAMNLDRK 193
Query: 102 EVTPRFVTSTIFPASESFV------AAPSHISPVKANR--FVFDAKKIDELKAKVASPTV 153
+ P TI P + + + ++PV A+ F F K + ELK A+ T+
Sbjct: 194 TIVPYLENYTIGPEVDHQIVKADVAGGDAVLTPVSASWAFFTFSPKAMSELK-DAATKTL 252
Query: 154 PRPTRV----EALTALIWKCARAASRSNLGYSRPSLSVQAIDVRAVAEPPLPDNSVG--N 207
T+ +AL+A IWK A + S P+ +A+D R + +N G
Sbjct: 253 DASTKFVSTDDALSAFIWKSASRVRLERIDGSAPTEFCRAVDARPAMG--VSNNYPGLLQ 310
Query: 208 SVAYLTAQASEKETETLQDLVCSLRK----AKAEFRRNGLKTLLKNKSIFDIPESIKDKF 263
++ Y + E E+L LR A R GL T L N P+
Sbjct: 311 NMTYHNSTIGEIANESLGATASRLRSELDPASMRQRTRGLATYLHNN-----PDKSNVSL 365
Query: 264 EKDEIDFYTFSSLVNFPYYEVADF----GWGKPVHMTMPNYW-VSNLIIIMAANDAKGIE 318
D D T L ++ + D+ G GKP + P + V +L+ M
Sbjct: 366 TADA-DPSTSVMLSSWAKVGLWDYDFGLGLGKPETVRRPIFEPVESLMYFMPKKPDGEFC 424
Query: 319 VWVTLSPEDMAFFEGDEELLAFA 341
++L EDM + D+E +A
Sbjct: 425 AALSLRDEDMDRLKADKEWTKYA 447
>pdb|2RKT|A Chain A, Crystal Sructure Of Apo F. Graminearum Tri101
Length = 452
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 87/226 (38%), Gaps = 27/226 (11%)
Query: 47 PMLRVQATFFKCGGLAITVCTCHKLIDGASLRIFVDSWATTARAD-----NQLSGSSNNK 101
P++ +Q F K GGL +TV H D + + R D + + + K
Sbjct: 136 PVILLQLNFIK-GGLILTVNGQHGAXDXVGQDAVIRLLSKACRNDPFTEEEXTAXNLDRK 194
Query: 102 EVTPRFVTSTIFPASESFV------AAPSHISPVKANR--FVFDAKKIDELKAKVASPTV 153
+ P TI P + + + ++PV A+ F F K ELK A+ T+
Sbjct: 195 TIVPYLENYTIGPEVDHQIVKADVAGGDAVLTPVSASWAFFTFSPKAXSELK-DAATKTL 253
Query: 154 PRPTRV----EALTALIWKCARAASRSNLGYSRPSLSVQAIDVRAVAEPPLPDNSVG--N 207
T+ +AL+A IWK A + S P+ +A+D R + +N G
Sbjct: 254 DASTKFVSTDDALSAFIWKSASRVRLERIDGSAPTEFCRAVDARPAXG--VSNNYPGLLQ 311
Query: 208 SVAYLTAQASEKETETLQDLVCSLRK----AKAEFRRNGLKTLLKN 249
+ Y + E E+L LR A R GL T L N
Sbjct: 312 NXTYHNSTIGEIANESLGATASRLRSELDPASXRQRTRGLATYLHN 357
>pdb|2ZBA|A Chain A, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|B Chain B, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|C Chain C, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|D Chain D, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
Length = 459
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 84/211 (39%), Gaps = 22/211 (10%)
Query: 1 NDEGAEYVEALAN-GFLFEYLQKPDQNLLRDFHPFNYVESPAASNGCPMLRVQATFFKCG 59
+D A +E L GF E D+N++ ++ P+L +Q F K G
Sbjct: 100 DDSSAPTIEGLRKAGFPLEXF---DENVVAPRKTLAIGPGNGPNDPKPVLLLQLNFIK-G 155
Query: 60 GLAITVCTCHKLID----GASLRIFVDSWATTARADNQLSGSS-NNKEVTPRFVTSTIFP 114
GL +TV H D A +R+ + + + ++S + + K V P + P
Sbjct: 156 GLILTVNGQHGAXDXTGQDAIIRLLSKACRNESFTEEEISAXNLDRKTVVPLLENYKVGP 215
Query: 115 ASESFVAAPSHISPVKANR-------FVFDAKKIDELKAKVASPTVPRPTRV----EALT 163
+ +A P+ F F K + ELK A+ T+ ++ +AL+
Sbjct: 216 ELDHQIAKPAPAGDAPPAPAKATWAFFSFTPKALSELK-DAATKTLDASSKFVSTDDALS 274
Query: 164 ALIWKCARAASRSNLGYSRPSLSVQAIDVRA 194
A IW+ + L S P+ +A+D R
Sbjct: 275 AFIWQSTSRVRLARLDASTPTEFCRAVDXRG 305
>pdb|2YEV|A Chain A, Structure Of Caa3-Type Cytochrome Oxidase
pdb|2YEV|D Chain D, Structure Of Caa3-Type Cytochrome Oxidase
Length = 791
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 11/124 (8%)
Query: 211 YLTAQASEKETETLQDLVCSLRKAKAEFRRNGLKTLLKNKSIFDIPESIKDKFEKDEIDF 270
YL A T + L + A+ L T++ +F + ES +I F
Sbjct: 260 YLGILAEVASTFARKPLFGYRQMVWAQMGIVVLGTMVWAHHMFTVGES-----TLFQIAF 314
Query: 271 YTFSSLVNFP----YYEVADFGWGKPVHMTMPNYWVSNLIIIMAANDAKGIEVWVTLSPE 326
F++L+ P + + WG + M P YWV I G+ ++++P
Sbjct: 315 AFFTALIAVPTGVKLFNIIGTLWGGKLQMKTPLYWVLGFIFNFLLGGITGVM--LSMTPL 372
Query: 327 DMAF 330
D F
Sbjct: 373 DYQF 376
>pdb|3F2B|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp, Mg And Zn
pdb|3F2C|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp And Mn
pdb|3F2D|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp, Mn And Zn
Length = 1041
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 129 VKANRFVFDA---------KKIDELKAKVASPTVPRPTRVEALTALIWKCARAASRSNLG 179
V+A F DA K+I+E+ AK T + + L + C R S N+
Sbjct: 890 VRAEDFDLDAMIKGSAAIRKRIEEINAKGIQATAKEKSLLTVLEVALEMCERGFSFKNID 949
Query: 180 YSRPSLSVQAIDVRAVAEPPLPDNSVGNSVAYLTAQASEK 219
R + ID ++ P +G +VA +A E+
Sbjct: 950 LYRSQATEFVIDGNSLIPPFNAIPGLGTNVAQAIVRAREE 989
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 218 EKETETLQDLVCSLRKAKAEFRRNGLKTLLKNKSIFDIPESIKDKFEKDEIDF-YTFSSL 276
EKE E L V L K + F RNG + L+ K + I + + + F E D Y+F L
Sbjct: 204 EKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAF--SEFDLPYSFVEL 261
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,308,637
Number of Sequences: 62578
Number of extensions: 402916
Number of successful extensions: 1006
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 983
Number of HSP's gapped (non-prelim): 18
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)