Query 039488
Match_columns 356
No_of_seqs 121 out of 1170
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 17:23:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039488.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039488hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bgh_A Vinorine synthase; VS, 100.0 5.7E-63 1.9E-67 484.2 27.2 326 1-346 90-420 (421)
2 4g22_A Hydroxycinnamoyl-COA sh 100.0 1.3E-62 4.5E-67 484.0 29.3 316 1-333 92-434 (439)
3 2xr7_A Malonyltransferase; xen 100.0 8.4E-58 2.9E-62 451.6 25.0 321 2-339 95-448 (453)
4 2e1v_A Acyl transferase; BAHD 100.0 1.7E-56 5.8E-61 442.4 31.0 323 2-339 100-448 (454)
5 2rkv_A Trichothecene 3-O-acety 100.0 1.8E-53 6.1E-58 420.4 27.0 328 2-343 79-449 (451)
6 1q9j_A PAPA5, polyketide synth 98.4 8.8E-06 3E-10 77.9 18.3 178 44-238 100-314 (422)
7 2jgp_A Tyrocidine synthetase 3 98.1 0.00011 3.8E-09 72.5 17.3 178 43-237 196-400 (520)
8 1l5a_A Amide synthase, VIBH; n 98.1 8.1E-05 2.8E-09 71.6 15.9 181 43-238 100-305 (436)
9 2xhg_A Tyrocidine synthetase A 97.9 0.00041 1.4E-08 67.2 17.3 187 43-239 122-337 (466)
10 4hvm_A Tlmii; PSI-biology, mid 97.9 0.00014 4.9E-09 71.2 13.8 181 43-238 116-328 (493)
11 3fot_A 15-O-acetyltransferase; 97.6 0.00073 2.5E-08 67.0 14.2 151 60-214 177-363 (519)
12 2vsq_A Surfactin synthetase su 97.5 0.0014 4.9E-08 72.1 16.1 184 43-237 121-327 (1304)
13 3cla_A Type III chloramphenico 82.4 0.94 3.2E-05 39.1 3.6 45 45-89 163-209 (213)
14 2i9d_A Chloramphenicol acetylt 81.5 1.1 3.6E-05 38.9 3.6 44 45-88 171-216 (217)
15 1q23_A Chloramphenicol acetylt 81.3 1.1 3.7E-05 38.9 3.6 45 46-90 168-214 (219)
16 3b8k_A PDCE2;, dihydrolipoylly 79.7 1.4 4.7E-05 38.7 3.7 29 61-89 204-232 (239)
17 1dpb_A Dihydrolipoyl-transacet 78.3 1.5 5.2E-05 38.6 3.6 30 61-90 208-237 (243)
18 3rqc_A Probable lipoamide acyl 78.3 1.3 4.4E-05 38.5 3.1 30 61-90 187-216 (224)
19 1scz_A E2, dihydrolipoamide su 78.2 1.5 5.3E-05 38.3 3.6 30 61-90 196-225 (233)
20 2ii3_A Lipoamide acyltransfera 77.1 1.7 5.8E-05 38.7 3.6 30 61-90 224-253 (262)
21 3mae_A 2-oxoisovalerate dehydr 73.3 2.5 8.4E-05 37.5 3.6 30 61-90 210-239 (256)
22 3l60_A Branched-chain alpha-ke 72.2 2.7 9.3E-05 37.1 3.6 30 61-90 205-234 (250)
23 3dva_I Dihydrolipoyllysine-res 54.5 2.6 8.9E-05 40.3 0.0 30 61-90 391-420 (428)
24 2xl1_A Arginine attenuator pep 52.2 8.8 0.0003 20.2 1.8 19 154-172 6-24 (26)
25 2p63_A Cell division control p 32.6 24 0.00082 22.8 1.9 35 199-236 20-54 (56)
26 2xt6_A 2-oxoglutarate decarbox 31.4 29 0.00099 37.3 3.5 29 61-89 192-220 (1113)
27 2k1o_A Putative; repressor, tr 30.6 83 0.0028 20.7 4.3 44 127-177 13-56 (66)
28 2v4x_A JSRV capsid, capsid pro 25.1 62 0.0021 25.6 3.5 37 133-175 11-61 (140)
29 2kgf_A Capsid protein P27; ret 21.8 71 0.0024 25.3 3.3 38 132-175 15-66 (140)
30 1x93_A Hypothetical protein HP 21.2 63 0.0021 20.5 2.3 37 130-173 2-38 (55)
31 4ard_A Capsid protein P27; vir 20.8 61 0.0021 24.7 2.6 34 136-175 1-48 (116)
No 1
>2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw, transferase; 2.6A {Rauvolfia serpentina}
Probab=100.00 E-value=5.7e-63 Score=484.19 Aligned_cols=326 Identities=29% Similarity=0.498 Sum_probs=268.2
Q ss_pred CCCCceeEEEEEccCchhhcCC-CChhhhccccCCCccCCC-CCCCCCCeEEEEEEEecCCcEEEEeccccccchhhHHH
Q 039488 1 NDEGAEYVEALANGFLFEYLQK-PDQNLLRDFHPFNYVESP-AASNGCPMLRVQATFFKCGGLAITVCTCHKLIDGASLR 78 (356)
Q Consensus 1 n~~Gv~f~eA~~d~~l~~~~~~-~~~~~~~~l~p~~~~~~~-~~~~~~Pll~vqvt~f~cgG~~l~v~~~H~v~Dg~~~~ 78 (356)
||+||.|+||++|++++|+... ++...++.|+|....... ....+.|++.+|||+|+|||++||+++||.++||.|+.
T Consensus 90 ~~~Gv~fv~A~~d~~l~~~~~~~p~~~~~~~l~p~~~~~~~~~~~~~~pll~vQvt~f~cgG~~lg~~~~H~v~Dg~~~~ 169 (421)
T 2bgh_A 90 NDSGVPFVEARVQAQLSQAIQNVVELEKLDQYLPSAAYPGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLA 169 (421)
T ss_dssp CCCCEEEEEEEESSCHHHHHSCCSSGGGGGGGSSSCSSSSSSSCCCTTCSEEEEEEECTTSCEEEEEEEETTTCCHHHHH
T ss_pred cCCceEEEEEEEcCCHHHHhccCCChHHHHhcCCCCCCccccccccCCceEEEEEEEEcCCCEEEEEEeeEEechHHHHH
Confidence 7899999999999999999864 655567888887621000 01456899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcCCCCCCCCcccCCCCC-CCCCCC-CCCCCCCCCCCCCceEEEEEeCHHhHHHHHHHhcCCCC-CC
Q 039488 79 IFVDSWATTARADNQLSGSSNNKEVTPRFVT-STIFPA-SESFVAAPSHISPVKANRFVFDAKKIDELKAKVASPTV-PR 155 (356)
Q Consensus 79 ~fl~~wa~~~rg~~~~~~~~~~~~~~P~~dr-~~l~~~-~~~P~~~p~~~~~~~~~~~~~~~~~i~~Lk~~a~~~~~-~~ 155 (356)
+|+++||+++||.. .. ..|.+|| ..+.++ ++.|........++++++|+|++++|++||+.+.+... .+
T Consensus 170 ~fl~~wa~~~rg~~-------~~-~~P~~dr~~~l~p~~~~~~~~~~~~~~~~~~~~f~f~~~~i~~LK~~a~~~~~~~~ 241 (421)
T 2bgh_A 170 TFLNAWTATCRGET-------EI-VLPNFDLAARHFPPVDNTPSPELVPDENVVMKRFVFDKEKIGALRAQASSASEEKN 241 (421)
T ss_dssp HHHHHHHHHHTTCS-------CC-CCCBCSHHHHHSCCCTTCCCCCCCCCSSEEEEEEEECHHHHHHHHHHTC-----CC
T ss_pred HHHHHHHHHhcCCC-------CC-CCCccccccccCCCcccCCCCccCCccceEEEEEEECHHHHHHHHHHhhccCCCCC
Confidence 99999999999952 22 5788998 666655 44443111124678999999999999999999976543 68
Q ss_pred CCHHHHHHHHHHHHHHHhhcccCCCCCcceEEEEeecccccCCCCCCCCcchhhhhhhhccCchhhhhHHHHHHHHHHHH
Q 039488 156 PTRVEALTALIWKCARAASRSNLGYSRPSLSVQAIDVRAVAEPPLPDNSVGNSVAYLTAQASEKETETLQDLVCSLRKAK 235 (356)
Q Consensus 156 ~St~dal~A~lW~~~~~ar~~~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~~~~~~~~~~~~~~~~L~~~A~~ir~ai 235 (356)
+|+||+|+||+|||+++||....++++.+++.++||+|+|++||+|++||||++..+.+.+++++-++|+++|..||+++
T Consensus 242 ~St~d~l~A~iW~~~~~Ar~~~~~~~~~~~l~~~vd~R~rl~pplP~~y~GN~~~~~~~~~~~~~~~~l~~~a~~ir~ai 321 (421)
T 2bgh_A 242 FSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHYAMGNIATLLFAAVDAEWDKDFPDLIGPLRTSL 321 (421)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSCCCSCEEEEEEEESGGGSSSCCCTTBCSCCEEEEEEEECTTCCCCGGGGHHHHHHHT
T ss_pred CchhHhHHHHHHHHHHHHhcccCCCCCceEEEEEecCccccCCCCCCCccceEEEEEEEEecccccccHHHHHHHHHHHH
Confidence 99999999999999999997643335789999999999999999999999999999988888876239999999999999
Q ss_pred HHHhhhhhhhhhcccccccchhHHHhhcccCCCcEEEEecCCCCCCCCccccCCCcceeeecCccccCcEEEEEecCCCC
Q 039488 236 AEFRRNGLKTLLKNKSIFDIPESIKDKFEKDEIDFYTFSSLVNFPYYEVADFGWGKPVHMTMPNYWVSNLIIIMAANDAK 315 (356)
Q Consensus 236 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ssw~~~~~~~~~DFG~G~P~~~~~~~~~~~g~~~i~p~~~~~ 315 (356)
+++++++++.+.+ +.+... .. .+.+.+++|||.++++|++ |||||||+++++...+.+|+++++|+++++
T Consensus 322 ~~~~~~~~~~~~~------~~~~~~-~~--~~~~~~~vssw~~~~~y~~-DFGwGkP~~v~~~~~~~~g~~~~~p~~~~~ 391 (421)
T 2bgh_A 322 EKTEDDHNHELLK------GMTCLY-EL--EPQELLSFTSWCRLGFYDL-DFGWGKPLSACTTTFPKRNAALLMDTRSGD 391 (421)
T ss_dssp CCCSSCHHHHHHH------HHHHHH-TS--CGGGEEEEEEETTSCGGGC-CSSSCCCSEEECCCCCSTTEEEEEECTTSS
T ss_pred HHHHHHHHHHHHH------HHHHhh-cc--CCCCeEEEeccccCCCccc-ccCCCccCeecccccCcCCEEEEEecCCCC
Confidence 9999888885543 222111 11 2235699999999999999 999999999998776668999999999888
Q ss_pred cEEEEEecCHHHHHhhhcChhhhhhhccCCC
Q 039488 316 GIEVWVTLSPEDMAFFEGDEELLAFATRNPS 346 (356)
Q Consensus 316 g~ev~v~L~~~~m~~l~~D~~~~~~~~~~~~ 346 (356)
|++|.|+|++++|++|++ ||.+|++.+|+
T Consensus 392 gi~v~v~L~~~~m~~f~~--e~~~~~~~~~~ 420 (421)
T 2bgh_A 392 GVEAWLPMAEDEMAMLPV--ELLSLVDSDFS 420 (421)
T ss_dssp SEEEEEEEEHHHHHHSCH--HHHTTBCCCCC
T ss_pred eEEEEEEcCHHHHHHHHH--HHHHhhcCCCC
Confidence 999999999999999988 99999999986
No 2
>4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase; BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A 4g0b_A
Probab=100.00 E-value=1.3e-62 Score=484.04 Aligned_cols=316 Identities=24% Similarity=0.352 Sum_probs=257.1
Q ss_pred CCCCceeEEEEEccCchhhcCCCChhhhccccCCCccCCCCCCCCCCeEEEEEEEecCCcEEEEeccccccchhhHHHHH
Q 039488 1 NDEGAEYVEALANGFLFEYLQKPDQNLLRDFHPFNYVESPAASNGCPMLRVQATFFKCGGLAITVCTCHKLIDGASLRIF 80 (356)
Q Consensus 1 n~~Gv~f~eA~~d~~l~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~Pll~vqvt~f~cgG~~l~v~~~H~v~Dg~~~~~f 80 (356)
||+||+|+||++|++++|+........++.|+|..+. .....+.|++.||||+|+|||++||+++||.++||.|+++|
T Consensus 92 ~~~Gv~fv~A~~d~~l~~l~~~~p~~~~~~l~p~~~~--~~~~~~~pll~vQvT~f~cGG~~lg~~~~H~v~Dg~~~~~F 169 (439)
T 4g22_A 92 NGEGVLFVEAESDGVVDDFGDFAPTLELRRLIPAVDY--SQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHF 169 (439)
T ss_dssp CCCCEEEEEEEESSCGGGGTTCCCCGGGGGGSCCCCT--TSCTTSSCSEEEEEEECTTSCEEEEEEECTTTCCHHHHHHH
T ss_pred CCCCCEEEEEEcCCcHHHhcCCCCCHHHHhcCCCCCc--ccccccCceeEEEEEEecCCCEEEEEEeeeccCcHHHHHHH
Confidence 7899999999999999999753223357788886543 12246789999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcCCCCCCCCcccCCCCCCCCCCCCCCCC-------CCC--C---------C-C-CCceEEEEEeCHHh
Q 039488 81 VDSWATTARADNQLSGSSNNKEVTPRFVTSTIFPASESFV-------AAP--S---------H-I-SPVKANRFVFDAKK 140 (356)
Q Consensus 81 l~~wa~~~rg~~~~~~~~~~~~~~P~~dr~~l~~~~~~P~-------~~p--~---------~-~-~~~~~~~~~~~~~~ 140 (356)
+++||+++||.. ...+|++||+.+.+ ++.|. +.| . . . .++++++|+|++++
T Consensus 170 l~~wa~~~rg~~--------~~~~P~~dr~~l~~-~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fs~~~ 240 (439)
T 4g22_A 170 INSWSDMARGLD--------VTLPPFIDRTLLRA-RDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQ 240 (439)
T ss_dssp HHHHHHHHTTCC--------CSSCCBCCGGGGCC-CSSCCCSSCCGGGSCCC---------------CEEEEEEEECHHH
T ss_pred HHHHHHHhCCCC--------CCCCCccccccccC-CCCCCCCcCcccccCCCCCcccccccccCCcccceEEEEEECHHH
Confidence 999999999942 24678999875532 22221 111 0 1 1 56889999999999
Q ss_pred HHHHHHHhcCCC-CCCCCHHHHHHHHHHHHHHHhhcccCCCCCcceEEEEeecccccCCCCCCCCcchhhhhhhhccCch
Q 039488 141 IDELKAKVASPT-VPRPTRVEALTALIWKCARAASRSNLGYSRPSLSVQAIDVRAVAEPPLPDNSVGNSVAYLTAQASEK 219 (356)
Q Consensus 141 i~~Lk~~a~~~~-~~~~St~dal~A~lW~~~~~ar~~~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~~~~~~~~~~~~ 219 (356)
|++||+++..+. ..++|++|+|+||+|||++|||+..+ ++.+++.++||+|+|++||+|++||||++..+.+.++++
T Consensus 241 i~~LK~~a~~~~~~~~~St~dal~A~iWr~~~rAr~~~~--~~~~~l~~~vd~R~rl~Pplp~~Y~GN~v~~~~~~~~~~ 318 (439)
T 4g22_A 241 ISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEV--DQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAG 318 (439)
T ss_dssp HHHHHHGGGGGGCCCCCCHHHHHHHHHHHHHHHHTTCCT--TCEEEEEEEEECTTTSSSCCCTTBCSCCEEEECCEEEHH
T ss_pred HHHHHHHhhccCCCCCccHHHHHHHHHHHHHHHhcCCCC--CCcEEEEEEEcccCCCCCCCCCCcccceeehhhcceEHH
Confidence 999999997653 46799999999999999999998644 478999999999999999999999999999999999999
Q ss_pred hh-h-hHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhHHHh---hcccCCCcEEEEecCCCCCCCCccccCCCccee
Q 039488 220 ET-E-TLQDLVCSLRKAKAEFRRNGLKTLLKNKSIFDIPESIKD---KFEKDEIDFYTFSSLVNFPYYEVADFGWGKPVH 294 (356)
Q Consensus 220 ~~-~-~L~~~A~~ir~ai~~~~~e~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ssw~~~~~~~~~DFG~G~P~~ 294 (356)
|+ + +|+++|.+||++++++++|++++.++ |....++... .....+...+++|||.+|++|++ |||||||++
T Consensus 319 el~~~~L~~~A~~Ir~ai~~~~~e~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vssw~r~~~y~~-DFGwGkP~~ 394 (439)
T 4g22_A 319 DLEFKPVWYAASKIHDALARMDNDYLRSALD---YLELQPDLKALVRGAHTFKCPNLGITSWVRLPIHDA-DFGWGRPIF 394 (439)
T ss_dssp HHHHSCHHHHHHHHHHHHHTCSHHHHHHHHH---HHHTCSCSTTCCCCHHHHCTTCEEEEECTTSCTTCC-CCSSCCCSE
T ss_pred HHhhCcHHHHHHHHHHHHHhhCHHHHHHHHH---HHHhCccchhhcccCCcCcCCcEEEeecCcCCcccc-ccCCCCcce
Confidence 85 5 99999999999999999999998776 3222111100 01111123599999999999999 999999999
Q ss_pred eecCccccCcEEEEEecCCCC-cEEEEEecCHHHHHhhhc
Q 039488 295 MTMPNYWVSNLIIIMAANDAK-GIEVWVTLSPEDMAFFEG 333 (356)
Q Consensus 295 ~~~~~~~~~g~~~i~p~~~~~-g~ev~v~L~~~~m~~l~~ 333 (356)
+++...+.+|.++++|+++++ |++|.|+|++++|++|++
T Consensus 395 ~~~~~~~~~g~~~~~p~~~~~ggi~v~v~L~~~~m~~f~~ 434 (439)
T 4g22_A 395 MGPGGIAYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQS 434 (439)
T ss_dssp EEESSCCSTTEEEEEECTTCSSCEEEEEEEEHHHHHHHHH
T ss_pred eeccccCCCcEEEEeecCCCCCcEEEEEECCHHHHHHHHH
Confidence 998766678999999997554 799999999999999986
No 3
>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A {Nicotiana tabacum}
Probab=100.00 E-value=8.4e-58 Score=451.60 Aligned_cols=321 Identities=19% Similarity=0.249 Sum_probs=252.8
Q ss_pred CCCceeEEEEEccCchhhcCC--CChhhhccccCCCccCC-CCCCCCCCeEEEEEEEecCCcEEEEeccccccchhhHHH
Q 039488 2 DEGAEYVEALANGFLFEYLQK--PDQNLLRDFHPFNYVES-PAASNGCPMLRVQATFFKCGGLAITVCTCHKLIDGASLR 78 (356)
Q Consensus 2 ~~Gv~f~eA~~d~~l~~~~~~--~~~~~~~~l~p~~~~~~-~~~~~~~Pll~vqvt~f~cgG~~l~v~~~H~v~Dg~~~~ 78 (356)
++||+|+||++|.+++++... .....++.|+|..+... .....+.|++.+|||+|+|||++||+++||.++||.|++
T Consensus 95 ~~gv~fv~A~~~~~l~~l~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~pll~vQvT~f~cGG~~lg~~~~H~v~Dg~~~~ 174 (453)
T 2xr7_A 95 GNSVSVIFSESDMDFNYLIGYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIV 174 (453)
T ss_dssp TCCCEEEEEECCSCHHHHTCSSCCCGGGGGGGSCCCCCCEEETTEEECCCEEEEEEEETTTEEEEEEEECTTTCCSHHHH
T ss_pred CCceEEEEEecCCCHHHhhccCCCChhhhhcCCCCCCCcccccccccCCeEEEEEEEccCCcEEEEEeeeeeeechhHHH
Confidence 599999999999999999752 23445678888764210 000122899999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCCcCCCCCCCCcccCCCCCCCCCCCCCC-----------CCCCCC----CCCCceEEEEEeCHHhHH
Q 039488 79 IFVDSWATTAR-ADNQLSGSSNNKEVTPRFVTSTIFPASES-----------FVAAPS----HISPVKANRFVFDAKKID 142 (356)
Q Consensus 79 ~fl~~wa~~~r-g~~~~~~~~~~~~~~P~~dr~~l~~~~~~-----------P~~~p~----~~~~~~~~~~~~~~~~i~ 142 (356)
+|+++||+++| |... ....+...|.+||+.+.+|..+ |...+. ...++++++|+|++++|+
T Consensus 175 ~Fl~~wa~~~r~G~~~---~~~~~~~~P~~dr~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~i~ 251 (453)
T 2xr7_A 175 KFVRAWALLNKFGGDE---QFLANEFIPFYDRSVIKDPNGVGMSIWNEMKKYKHMMKMSDVVTPPDKVRGTFIITRHDIG 251 (453)
T ss_dssp HHHHHHHHHHHTTTCG---GGSCGGGSCBCCCSSSCCSSCHHHHTTTTGGGCTTTSCCSCCCCCCSCCCEEEEECHHHHH
T ss_pred HHHHHHHHHhhcCCCc---ccCCCCCCCccccccccCCCCcchHHHHhccccCCccccccccCCCCceEEEEEECHHHHH
Confidence 99999999999 7410 0001235688999877654321 111011 134677899999999999
Q ss_pred HHHHHhcCCCC--CCCCHHHHHHHHHHHHHHHhhccc--C-CCCCcceEEEEeecccccCCCCCCCCcchhhhhhhhccC
Q 039488 143 ELKAKVASPTV--PRPTRVEALTALIWKCARAASRSN--L-GYSRPSLSVQAIDVRAVAEPPLPDNSVGNSVAYLTAQAS 217 (356)
Q Consensus 143 ~Lk~~a~~~~~--~~~St~dal~A~lW~~~~~ar~~~--~-~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~~~~~~~~~~ 217 (356)
+||+++.+... .++|+||+|+||+|||+++||... . ++++.+++.++||+|+|++||+|++||||++..+.+.++
T Consensus 252 ~Lk~~a~~~~~~~~~~St~~~l~A~lW~~~~~Ar~~~~~~~~~~~~~~l~~~vd~R~rl~pplP~~Y~GN~~~~~~~~~~ 331 (453)
T 2xr7_A 252 KLKNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAATGEEIDENGMEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTR 331 (453)
T ss_dssp HHHHHHHHHSCCCSCCCHHHHHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEECCTTSCSSSCCCTTBCSCCCCEEEEEEE
T ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHhccccccCCCCcceEEEEEecccccCCCCCCcccccceeeeeeeeee
Confidence 99999975432 679999999999999999999762 0 235789999999999999999999999999999999999
Q ss_pred chhh--h-hHHHHHHHHHHHHHH--Hhhh-hhhhhhcccccccchhHHHhhcccCCCcEEEEecCCCCCCCCccccCCCc
Q 039488 218 EKET--E-TLQDLVCSLRKAKAE--FRRN-GLKTLLKNKSIFDIPESIKDKFEKDEIDFYTFSSLVNFPYYEVADFGWGK 291 (356)
Q Consensus 218 ~~~~--~-~L~~~A~~ir~ai~~--~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ssw~~~~~~~~~DFG~G~ 291 (356)
++|+ + +|+++|..||+++++ .+++ ++++ + |. +... .+ .+...+.+|||.+|++|++ ||||||
T Consensus 332 ~~el~~~~~l~~~a~~Ir~ai~~~~~~~e~~~~~--~---~~---~~~~-~~--~~~~~~~vssw~~~~~y~~-DFG~G~ 399 (453)
T 2xr7_A 332 QVDLAGKEGFTIAVELIGEAIRKRMKDEEWILSG--S---WF---KEYD-KV--DAKRSLSVAGSPKLDLYAA-DFGWGR 399 (453)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHTTSSSCHHHHHSS--C---TT---SCCC-CS--CGGGEEEECSCSSCCGGGC-CCSSCS
T ss_pred HHHhcCcchHHHHHHHHHHHHHhhccCCccchhh--H---HH---HHHH-hh--ccCCcEEEeccccCCcccc-ccCCCc
Confidence 9884 4 999999999999999 5677 8875 3 32 2111 11 1223699999999999999 999999
Q ss_pred ceeeecCccccCc--EEEEEecCCCC-cEEEEEecCHHHHHhhhcChhhhh
Q 039488 292 PVHMTMPNYWVSN--LIIIMAANDAK-GIEVWVTLSPEDMAFFEGDEELLA 339 (356)
Q Consensus 292 P~~~~~~~~~~~g--~~~i~p~~~~~-g~ev~v~L~~~~m~~l~~D~~~~~ 339 (356)
|+++++...+.+| +++|+|+++++ |++|.|+|++++|++|++ +|.+
T Consensus 400 P~~v~~~~~~~~g~~~~~l~~~~~~~ggi~v~v~L~~~~m~~f~~--~~~~ 448 (453)
T 2xr7_A 400 PEKLEFVSIDNDDGISMSLSKSKDSDGDLEIGLSLSKTRMNAFAA--MFTH 448 (453)
T ss_dssp CSEEEEGGGSSCSSCEEEEEECSSSTTCEEEEECCCHHHHHHHHH--HHHH
T ss_pred ceEEEeeeecCCCceEEEEeecCCCCCCEEEEEEeCHHHHHHHHH--HHHH
Confidence 9999987656678 89899887765 799999999999999965 6654
No 4
>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A
Probab=100.00 E-value=1.7e-56 Score=442.39 Aligned_cols=323 Identities=21% Similarity=0.258 Sum_probs=249.5
Q ss_pred CCCceeEEEEEccCchhhcCC-C-ChhhhccccCCCccCC-CCCCCCCCeEEEEEEEecCCcEEEEeccccccchhhHHH
Q 039488 2 DEGAEYVEALANGFLFEYLQK-P-DQNLLRDFHPFNYVES-PAASNGCPMLRVQATFFKCGGLAITVCTCHKLIDGASLR 78 (356)
Q Consensus 2 ~~Gv~f~eA~~d~~l~~~~~~-~-~~~~~~~l~p~~~~~~-~~~~~~~Pll~vqvt~f~cgG~~l~v~~~H~v~Dg~~~~ 78 (356)
++||+|+||++|.+++++... + ....++.|+|..+... .....+.|++.+|||+|+|||++||+++||.++||.|++
T Consensus 100 ~~gv~fv~A~~~~~l~~l~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~pll~vQvT~f~cgG~~lg~~~~H~v~Dg~~~~ 179 (454)
T 2e1v_A 100 GDSVAVTFAECNLDLNELTGNHPRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRF 179 (454)
T ss_dssp TCCEEEEEEEECSCGGGTSSSSCEEGGGGGGGSCCCCCCEECSSCEEEECEEEEEEEETTTEEEEEEEECGGGCCHHHHH
T ss_pred CCcEEEEEEEeCCCHHHhcCCCCCcchhhhcCCCCCCCcccccccccCceEEEEEEEecCCcEEEEEEeeeeecchhHHH
Confidence 599999999999999999753 2 2345678888764311 011234599999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCCcCCCCCCCCcccCCCCCCCCCCCC-------CCCC------C-CCC--CCCCceEEEEEeCHHhH
Q 039488 79 IFVDSWATTAR-ADNQLSGSSNNKEVTPRFVTSTIFPAS-------ESFV------A-APS--HISPVKANRFVFDAKKI 141 (356)
Q Consensus 79 ~fl~~wa~~~r-g~~~~~~~~~~~~~~P~~dr~~l~~~~-------~~P~------~-~p~--~~~~~~~~~~~~~~~~i 141 (356)
+|+++||+++| |.... ....+...|.+|| .+..|. ..+. + .+. ...++++++|+|++++|
T Consensus 180 ~Fl~awa~~~r~g~~~~--~~~~~~~~P~~dr-~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~i 256 (454)
T 2e1v_A 180 CFLKAWTSIARSGNNDE--SFLANGTRPLYDR-IIKYPMLDEAYLKRAKVESFNEDYVTQSLAGPSDKLRATFILTRAVI 256 (454)
T ss_dssp HHHHHHHHHHHTTSCCH--HHHHHSCCCBCCC-CCCCHHHHHHHHHHTTCTTHHHHCCCCCCCCCCCEEEEEEEECHHHH
T ss_pred HHHHHHHHHhccCCCcc--ccCCCCCCCcccc-cCCCCCcchHHHHhhhccccccccCcccCCCCCCceEEEEEECHHHH
Confidence 99999999999 74100 0001134688998 553221 0000 0 011 13467899999999999
Q ss_pred HHHHHHhcCCCC--CCCCHHHHHHHHHHHHHHHhhcccCCCCCcceEEEEeecccccCCCCCCCCcchhhhhhhhccCch
Q 039488 142 DELKAKVASPTV--PRPTRVEALTALIWKCARAASRSNLGYSRPSLSVQAIDVRAVAEPPLPDNSVGNSVAYLTAQASEK 219 (356)
Q Consensus 142 ~~Lk~~a~~~~~--~~~St~dal~A~lW~~~~~ar~~~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~~~~~~~~~~~~ 219 (356)
++||+++.++.. .++|+||+|+||+|||+++|| + ++.+++.++||+|+|++||+|++||||++..+.+.++++
T Consensus 257 ~~LK~~a~~~~~~~~~~St~d~l~A~lWr~~~~Ar---~--~~~~~l~~~vd~R~rl~pplP~~Y~GN~~~~~~~~~~~~ 331 (454)
T 2e1v_A 257 NQLKDRVLAQLPTLEYVSSFTVACAYIWSCIAKSR---N--DKLQLFGFPIDRRARMKPPIPTAYFGNCVGGCAAIAKTN 331 (454)
T ss_dssp HHHHHHHHHHCTTCSCCCHHHHHHHHHHHHHHHHH---C--CSEEEEEEEEECGGGSSSCCCTTBCSCCEEEEEEEEEGG
T ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhc---C--CCceEEEEEecchhccCCCCCcccccceeeeEEeecchh
Confidence 999999975432 579999999999999999998 2 478999999999999999999999999999999999998
Q ss_pred hh--h-hHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhHHHhhcccCCCcEEEEecCCCCCCCCccccCCCcceeee
Q 039488 220 ET--E-TLQDLVCSLRKAKAEFRRNGLKTLLKNKSIFDIPESIKDKFEKDEIDFYTFSSLVNFPYYEVADFGWGKPVHMT 296 (356)
Q Consensus 220 ~~--~-~L~~~A~~ir~ai~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ssw~~~~~~~~~DFG~G~P~~~~ 296 (356)
|+ + +|+++|..||+++++++++|++..+.. .+.++++... .+ .+...+.+|||.+|++|++ |||||||++++
T Consensus 332 el~~~~~l~~~a~~Ir~ai~~~~~~~~~~~~~~-~~~~~~~~~~-~~--~~~~~~~vssw~~~~~y~~-DFG~G~P~~v~ 406 (454)
T 2e1v_A 332 LLIGKEGFITAAKLIGENLHKTLTDYKDGVLKD-DMESFNDLVS-EG--MPTTMTWVSGTPKLRFYDM-DFGWGKPKKLE 406 (454)
T ss_dssp GTSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC------CHHHH-HC--CCSEEEEEECCTTSCGGGC-CSSSCSCSEEE
T ss_pred hccccccHHHHHHHHHHHHHhhhhhhhHHHHHH-HHHHHHHHHH-hh--cCCceEEEecCCCCCcccc-cccCccceEEE
Confidence 84 4 999999999999999986666554331 0222333222 12 1233699999999999999 99999999999
Q ss_pred cCccccCcEEEEEecCCCC-cEEEEEecCHHHHHhhhcChhhhh
Q 039488 297 MPNYWVSNLIIIMAANDAK-GIEVWVTLSPEDMAFFEGDEELLA 339 (356)
Q Consensus 297 ~~~~~~~g~~~i~p~~~~~-g~ev~v~L~~~~m~~l~~D~~~~~ 339 (356)
+...+.+|+++|+|+++++ |++|.|+|++++|++|++ +|.+
T Consensus 407 ~~~~~~~g~~~l~p~~~~~ggi~v~v~L~~~~m~~f~~--~~~~ 448 (454)
T 2e1v_A 407 TVSIDHNGAISINSCKESNEDLEIGVCISATQMEDFVH--IFDD 448 (454)
T ss_dssp EGGGGGSSEEEEEECSSCTTSEEEEEEEEHHHHHHHHH--HHHH
T ss_pred eeeeCCCCeEEEEecCCCCCCEEEEEEECHHHHHHHHH--HHHH
Confidence 8765667999999988765 799999999999999965 6654
No 5
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Probab=100.00 E-value=1.8e-53 Score=420.40 Aligned_cols=328 Identities=19% Similarity=0.215 Sum_probs=244.9
Q ss_pred CCCceeEEEEEcc-----CchhhcC-CCChhhh--ccccCCCccCCC---CCCCCCCeEEEEEEEecCCcEEEEeccccc
Q 039488 2 DEGAEYVEALANG-----FLFEYLQ-KPDQNLL--RDFHPFNYVESP---AASNGCPMLRVQATFFKCGGLAITVCTCHK 70 (356)
Q Consensus 2 ~~Gv~f~eA~~d~-----~l~~~~~-~~~~~~~--~~l~p~~~~~~~---~~~~~~Pll~vqvt~f~cgG~~l~v~~~H~ 70 (356)
|+++.|++|.++. +++++.. ......+ ..|.|....+.. ....+.|++.+|||+| |||++||+++||.
T Consensus 79 ~~~~~~~va~~~~d~~~p~~~~l~~~~~p~~~~~~~~~~p~~~~p~~~~~~~~~~~pll~vQvT~~-~GG~~lg~~~~H~ 157 (451)
T 2rkv_A 79 EDVPRVVVKDLRDDPSAPTIEGMRKAGYPMAMFDENIIAPRKTLPIGPGTGPDDPKPVILLQLNFI-KGGLILTVNGQHG 157 (451)
T ss_dssp CSSCEEEEEECTTCTTSCBHHHHHHHTSCGGGSBHHHHCSSCSSSCSTTCSTTSCCBSEEEEEEEE-BTEEEEEEEEETT
T ss_pred CCCCeEEEEeCCCCCCCCCHHHHHHcCCChhhcCHhhcCCcccCCCCcccCCCCCCceEEEEEEEe-cCceeeeeeehhc
Confidence 4455588888875 5777653 2111112 124443311110 0134589999999955 7999999999999
Q ss_pred cchhhHHHHHHHHHHHHhcCCCcCCCCCCCCcccCCCCCCCCCCCC--CCC-------CCC--CC------CCCCceEEE
Q 039488 71 LIDGASLRIFVDSWATTARADNQLSGSSNNKEVTPRFVTSTIFPAS--ESF-------VAA--PS------HISPVKANR 133 (356)
Q Consensus 71 v~Dg~~~~~fl~~wa~~~rg~~~~~~~~~~~~~~P~~dr~~l~~~~--~~P-------~~~--p~------~~~~~~~~~ 133 (356)
++||.|+++|+++||+++||... .......|++||+.+.+.. ..| .+. +. ...++++++
T Consensus 158 v~Dg~g~~~Fl~awa~~~rg~~~----~~~~~~~p~~dr~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (451)
T 2rkv_A 158 AMDMVGQDAVIRLLSKACRNDPF----TEEEMTAMNLDRKTIVPYLENYTIGPEVDHQIVKADVAGGDAVLTPVSASWAF 233 (451)
T ss_dssp TCCHHHHHHHHHHHHHHHHTCCC----CHHHHHHTTCCSTTSSCCCTTCCCCGGGTTCBCCTTSCC-------CCEEEEE
T ss_pred cccHHHHHHHHHHHHHHhcCCCC----CccccccccCchhhccccccccCCCccccccccCCCCCCCCCCCCCCCceEEE
Confidence 99999999999999999999421 0001135778876544321 111 111 10 135688999
Q ss_pred EEeCHHhHHHHHHHhcCCC---CCCCCHHHHHHHHHHHHHHHhhcccCCCCCcceEEEEeecccccCCCCCCCCcchhhh
Q 039488 134 FVFDAKKIDELKAKVASPT---VPRPTRVEALTALIWKCARAASRSNLGYSRPSLSVQAIDVRAVAEPPLPDNSVGNSVA 210 (356)
Q Consensus 134 ~~~~~~~i~~Lk~~a~~~~---~~~~St~dal~A~lW~~~~~ar~~~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~~~ 210 (356)
|+|++++|++||+++.++. ..++|++|+|+||+|||+++||....++++.+++.++||+|+|++ +|.+||||++.
T Consensus 234 f~f~~~~i~~LK~~a~~~~~~~~~~~St~d~l~A~~Wr~~~~Ar~~~~~~~~~~~l~~~vd~R~rl~--lP~~y~GN~~~ 311 (451)
T 2rkv_A 234 FTFSPKAMSELKDAATKTLDASTKFVSTDDALSAFIWKSASRVRLERIDGSAPTEFCRAVDARPAMG--VSNNYPGLLQN 311 (451)
T ss_dssp EEECHHHHHHHHHHHHTTCCTTCSCCCHHHHHHHHHHHHHHHHHTTTSCTTSEEEEEEEEECHHHHT--CCTTCCSCCEE
T ss_pred EEECHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHhccCCCCCceEEEEEecccccCC--CCCCCccccee
Confidence 9999999999999997653 367999999999999999999821112357899999999999998 89999999999
Q ss_pred hhhhccCchhh-h-hHHHHHHHHHHHHHHHhhhh-hhhhhcccccccchhHHHh--hcc----cCCCcEEEEecCCCCCC
Q 039488 211 YLTAQASEKET-E-TLQDLVCSLRKAKAEFRRNG-LKTLLKNKSIFDIPESIKD--KFE----KDEIDFYTFSSLVNFPY 281 (356)
Q Consensus 211 ~~~~~~~~~~~-~-~L~~~A~~ir~ai~~~~~e~-~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~ssw~~~~~ 281 (356)
.+.+.++++|+ + +|+++|..||+++.+++.++ +++.++ +++...+ .+. ......+++|||+++++
T Consensus 312 ~~~~~~~~~el~~~~L~~~a~~ir~ai~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ssw~~~~~ 385 (451)
T 2rkv_A 312 MTYHNSTIGEIANESLGATASRLRSELDPASMRQRTRGLAT------YLHNNPDKSNVSLTADADPSTSVMLSSWAKVGL 385 (451)
T ss_dssp EEEEEEEHHHHHHSCHHHHHHHHHTTCCHHHHHHHHHHHHH------HHHHCSCCTTBCTTTTCCTTTCEEEEECTTCCG
T ss_pred eecccCcHHHhccchHHHHHHHHHHHhcccCchhHHHHHHH------HHhcCCCccccccccccCCCCCEEEeccccCCc
Confidence 99988888885 5 99999999999999998888 887655 3332111 111 11123499999999999
Q ss_pred CCccccC--CCcceeeecCc-cccCcEEEEEecCCCCcEEEEEecCHHHHHhhhcChhhhhhhcc
Q 039488 282 YEVADFG--WGKPVHMTMPN-YWVSNLIIIMAANDAKGIEVWVTLSPEDMAFFEGDEELLAFATR 343 (356)
Q Consensus 282 ~~~~DFG--~G~P~~~~~~~-~~~~g~~~i~p~~~~~g~ev~v~L~~~~m~~l~~D~~~~~~~~~ 343 (356)
|++ ||| ||||++++.+. .+.+|+++++|++.++|++|.|+|++++|++|++|+||.+|++.
T Consensus 386 y~~-DFG~gwG~P~~v~~~~~~~~~g~~~~~p~~~~ggi~v~v~L~~~~m~~f~~d~ef~~~~~~ 449 (451)
T 2rkv_A 386 WDY-DFGLGLGKPETVRRPIFEPVESLMYFMPKKPDGEFCAALSLRDEDMDRLKADKEWTKYAQY 449 (451)
T ss_dssp GGC-CTTCSSCSCSEEECCBCSCCTTEEEECCCCTTSCEEEEEEEEHHHHHHHHHCHHHHTTCEE
T ss_pred ccc-ccCCCCCCceEEEcCCccCCCCEEEEecCCCCCCEEEEEEeCHHHHHHHhcCHHHHhhhee
Confidence 999 998 79999998654 33579999998765668999999999999999999999999875
No 6
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=98.45 E-value=8.8e-06 Score=77.92 Aligned_cols=178 Identities=19% Similarity=0.205 Sum_probs=111.3
Q ss_pred CCCCeEEEEEEEecCCcEEEEeccccccchhhHHHHHHHHHHHHhc-----CCCcCCCCCCCCcccCCCC--------CC
Q 039488 44 NGCPMLRVQATFFKCGGLAITVCTCHKLIDGASLRIFVDSWATTAR-----ADNQLSGSSNNKEVTPRFV--------TS 110 (356)
Q Consensus 44 ~~~Pll~vqvt~f~cgG~~l~v~~~H~v~Dg~~~~~fl~~wa~~~r-----g~~~~~~~~~~~~~~P~~d--------r~ 110 (356)
.+.|++++.+.. ..+...|.+.+||.++||.|+..|++.|.+.++ |... .....+.-+ +.
T Consensus 100 ~~~pl~r~~l~~-~~~~~~l~l~~hH~i~Dg~S~~~l~~~l~~~Y~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 172 (422)
T 1q9j_A 100 QSVSLLHLQLIL-REGGAELTLYLHHCMADGHHGAVLVDELFSRYTDAVTTGDPG------PITPQPTPLSMEAVLAQRG 172 (422)
T ss_dssp TTTCSEEEEEEC-CSSSCEEEEEEEGGGCCHHHHHHHHHHHHHHHHHHHHSSSCC------CCCCCCCCBCHHHHHHHSS
T ss_pred CCCCcEEEEEEe-cCCCeEEEEEeceEEEchhhHHHHHHHHHHHHHHhhccCCCC------CCCCCCCCCCHHHHHHhcC
Confidence 568889888877 768899999999999999999999999999987 3211 000011100 00
Q ss_pred CC---------------C---C-CCCCCCCCCC-CCCCceEEEEEeCHHhHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Q 039488 111 TI---------------F---P-ASESFVAAPS-HISPVKANRFVFDAKKIDELKAKVASPTVPRPTRVEALTALIWKCA 170 (356)
Q Consensus 111 ~l---------------~---~-~~~~P~~~p~-~~~~~~~~~~~~~~~~i~~Lk~~a~~~~~~~~St~dal~A~lW~~~ 170 (356)
.. . + +..+|...+. .........+.++.+..++|++.|.. ..+|.+.++.|.+-..+
T Consensus 173 ~~~~~~~~~~~~~~~~W~~~l~~~~~lp~~~~~~~~~~~~~~~~~l~~~~~~~l~~~a~~---~~~t~~~~l~aa~~~~l 249 (422)
T 1q9j_A 173 IRKQGLSGAERFMSVMYAYEIPATETPAVLAHPGLPQAVPVTRLWLSKQQTSDLMAFGRE---HRLSLNAVVAAAILLTE 249 (422)
T ss_dssp CCC-----CTTSSTTTTCC-------------CCSBCCCCEEEECCCHHHHHHHHHHHTT---TTCCHHHHHHHHHHHHH
T ss_pred CcccccchhhhhhhhhhcccCCCcccCCCCCCCCCCCCccceEEEeCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHH
Confidence 00 0 0 0011111011 12234667889999999999999875 45899999999876666
Q ss_pred HHhhcccCCCCCcceEEEEeecccccCCCCC----CCCcchhhhhhhhccCchhhhhHHHHHHHHHHHHHHH
Q 039488 171 RAASRSNLGYSRPSLSVQAIDVRAVAEPPLP----DNSVGNSVAYLTAQASEKETETLQDLVCSLRKAKAEF 238 (356)
Q Consensus 171 ~~ar~~~~~~~~~~~l~~~vd~R~rl~pplp----~~Y~GN~~~~~~~~~~~~~~~~L~~~A~~ir~ai~~~ 238 (356)
.+-+.. . .....+.++++.|.+..|+++ .+.+|..+. .+++..-.++.+++..+++.+.+.
T Consensus 250 ~r~~~~-~--~~~v~~g~~~~~R~~~~~~~~~~~~~~~vG~f~n----~lp~~~~~~~~~~l~~v~~~~~~~ 314 (422)
T 1q9j_A 250 WQLRNT-P--HVPIPYVYPVDLRFVLAPPVAPTEATNLLGAASY----LAEIGPNTDIVDLASDIVATLRAD 314 (422)
T ss_dssp HHHHTC-S--SCCEEEEEEEETTTTSSSCCCTTTBSCCEEEEEE----EECCCSSCCHHHHHHHHHHHHHHH
T ss_pred HhcccC-C--CceEEEeeeeecccccCCCCChhhhhhhheeeee----eeeccCCCCHHHHHHHHHHHHHHH
Confidence 654221 1 256788899999998765443 234444432 223221025677777777777653
No 7
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=98.08 E-value=0.00011 Score=72.52 Aligned_cols=178 Identities=14% Similarity=0.085 Sum_probs=115.2
Q ss_pred CCCCCeEEEEEEEecCCcEEEEeccccccchhhHHHHHHHHHHHHhcCCCcCCCCCCCCcccCC-----CCCC-------
Q 039488 43 SNGCPMLRVQATFFKCGGLAITVCTCHKLIDGASLRIFVDSWATTARADNQLSGSSNNKEVTPR-----FVTS------- 110 (356)
Q Consensus 43 ~~~~Pll~vqvt~f~cgG~~l~v~~~H~v~Dg~~~~~fl~~wa~~~rg~~~~~~~~~~~~~~P~-----~dr~------- 110 (356)
....|++++.+.....+...|.+.+||.++||.|+..|++.+.+.+++... .+...+. +.+.
T Consensus 196 l~~~pl~r~~l~~~~~~~~~l~~~~HH~i~Dg~S~~~l~~el~~~Y~~~~l------~~~~~~~~d~~~~~~~~~~~~~~ 269 (520)
T 2jgp_A 196 LEVAPLIRVSLLKIGEDRYVLFTDMHHSISDGVSSGILLAEWVQLYQGDVL------PELRIQYKDFAVWQQEFSQSAAF 269 (520)
T ss_dssp TTSSCCEEEEEEEEETTEEEEEEEEBGGGCCHHHHHHHHHHHHHHHTTCCC------CCCSCCHHHHHHHHHHHTTSHHH
T ss_pred CCCCcceeEEEEEEcCCcEEEEEEccceeecHhHHHHHHHHHHHHHccCCC------CCCCCCHHHHHHHHHHhhcChhh
Confidence 455788888887776567899999999999999999999999999988421 1111110 0000
Q ss_pred ---------CCC---CCCCCCCCCC--C-CCCCceEEEEEeCHHhHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhhc
Q 039488 111 ---------TIF---PASESFVAAP--S-HISPVKANRFVFDAKKIDELKAKVASPTVPRPTRVEALTALIWKCARAASR 175 (356)
Q Consensus 111 ---------~l~---~~~~~P~~~p--~-~~~~~~~~~~~~~~~~i~~Lk~~a~~~~~~~~St~dal~A~lW~~~~~ar~ 175 (356)
.+. ++..+|...+ . .........+.++.+..++|++.|.. ..+|.+.++.|.+-..+.+-.+
T Consensus 270 ~~~~~yW~~~l~~~~~~~~lp~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~a~~---~~~T~~~~l~aa~a~~L~~~~~ 346 (520)
T 2jgp_A 270 HKQEAYWLQTFADDIPVLNLPTDFTRPSTQSFAGDQCTIGAGKALTEGLHQLAQA---TGTTLYMVLLAAYNVLLAKYAG 346 (520)
T ss_dssp HHHHHHHHHHTSSCCCCCCCCCSSCCCSSCCCBEEEEEEECCHHHHHHHHHHHHH---HTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCcCCCCCCCCCCCCCCCCccEEEEeCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHhcC
Confidence 010 0011221111 1 12334567889999999999988864 3589999998876655555432
Q ss_pred ccCCCCCcceEEEEeecccccCCCCCCCCcchhhhhhhhccCchhhhhHHHHHHHHHHHHHH
Q 039488 176 SNLGYSRPSLSVQAIDVRAVAEPPLPDNSVGNSVAYLTAQASEKETETLQDLVCSLRKAKAE 237 (356)
Q Consensus 176 ~~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~~~~~~~~~~~~~~~~L~~~A~~ir~ai~~ 237 (356)
.....+.++++.|..- --.+-+|+.+-....++....-.++.++...+++.+.+
T Consensus 347 -----~~dv~~g~~~~gR~~~---~~~~~vG~f~n~lplr~~~~~~~~~~~~l~~v~~~~~~ 400 (520)
T 2jgp_A 347 -----QEDIIVGTPITGRSHA---DLEPIVGMFVNTLAMRNKPQREKTFSEFLQEVKQNALD 400 (520)
T ss_dssp -----CSCEEEEEEECCCCSG---GGTTCCSCCCEEEEEEECCCTTSBHHHHHHHHHHHHHH
T ss_pred -----CCCeEEEeccCCCCch---hhhccEEeeeeeeeEEecCCCCCCHHHHHHHHHHHHHH
Confidence 2568899999999752 22455666655544454444212778888888877655
No 8
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=98.08 E-value=8.1e-05 Score=71.59 Aligned_cols=181 Identities=12% Similarity=0.052 Sum_probs=114.1
Q ss_pred CCCCCeEEEEEEEecCCcEEEEeccccccchhhHHHHHHHHHHHHhcCCCcCCCCCCCCcccCCCC------CCCCC---
Q 039488 43 SNGCPMLRVQATFFKCGGLAITVCTCHKLIDGASLRIFVDSWATTARADNQLSGSSNNKEVTPRFV------TSTIF--- 113 (356)
Q Consensus 43 ~~~~Pll~vqvt~f~cgG~~l~v~~~H~v~Dg~~~~~fl~~wa~~~rg~~~~~~~~~~~~~~P~~d------r~~l~--- 113 (356)
....|++++.+.....+...|.+.+||.++||.|+..|++.+.+.+++.... .. .....+.+. +..+.
T Consensus 100 l~~~pl~r~~l~~~~~~~~~l~~~~HH~i~Dg~S~~~l~~~l~~~Y~~~~~g--~~-~~~~~~~~~~~~~~~~~~~~~~~ 176 (436)
T 1l5a_A 100 LIDAPITSHQVYRLSHSEHLIYTRAHHIVLDGYGMMLFEQRLSQHYQSLLSG--QT-PTAAFKPYQSYLEEEAAYLTSHR 176 (436)
T ss_dssp CBTSCSCEEEEEEEETTEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHHHHT--CC-CCCCCCCHHHHHHHHHHHHTSHH
T ss_pred cCCCCCeEEEEEEEcCCEEEEEEeehhheecHhHHHHHHHHHHHHHHHHhcC--CC-CCCCccCHHHHHHHHHHhhccHh
Confidence 3456888888877765789999999999999999999999999998731000 11 111111110 00000
Q ss_pred ---------------C-CCCCCCCCCCCCCCceEEEEEeCHHhHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhhccc
Q 039488 114 ---------------P-ASESFVAAPSHISPVKANRFVFDAKKIDELKAKVASPTVPRPTRVEALTALIWKCARAASRSN 177 (356)
Q Consensus 114 ---------------~-~~~~P~~~p~~~~~~~~~~~~~~~~~i~~Lk~~a~~~~~~~~St~dal~A~lW~~~~~ar~~~ 177 (356)
+ +..+|...+..........+.++.+..++|++.|.. ..+|.+.++.|.+-..+.+-.+
T Consensus 177 ~~~~~~~W~~~l~~~~~~~~lp~~~~~~~~~~~~~~~~l~~~~~~~l~~~a~~---~~~t~~~~l~aa~~~~L~~~~g-- 251 (436)
T 1l5a_A 177 YWQDKQFWQGYLREAPDLTLTSATYDPQLSHAVSLSYTLNSQLNHLLLKLANA---NQIGWPDALVALCALYLESAEP-- 251 (436)
T ss_dssp HHHHHHHHHHHHHTSCCCCBCCTTCCGGGCCEEEEEEECCHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHST--
T ss_pred HHHHHHHHHHHhcCCCCcccCCCCCCCCcccceeeEEecCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHhhC--
Confidence 0 001111000012344577889999999999998875 3589999998876555554422
Q ss_pred CCCCCcceEEEEeecccccCCCCCCCCcchhhhhhhhccCchhhhhHHHHHHHHHHHHHHH
Q 039488 178 LGYSRPSLSVQAIDVRAVAEPPLPDNSVGNSVAYLTAQASEKETETLQDLVCSLRKAKAEF 238 (356)
Q Consensus 178 ~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~~~~~~~~~~~~~~~~L~~~A~~ir~ai~~~ 238 (356)
....+.++++.|.. +--.+-+|+.+-....++....-.++.+++..+++.+.+.
T Consensus 252 ----~dv~ig~~~~~R~~---~~~~~~vG~f~n~lplr~~~~~~~t~~~~l~~v~~~~~~~ 305 (436)
T 1l5a_A 252 ----DAPWLWLPFMNRWG---SVAANVPGLMVNSLPLLRLSAQQTSLGNYLKQSGQAIRSL 305 (436)
T ss_dssp ----TCCEEEEEECCCTT---SGGGGSCSCCCEEEEEECCCCTTCBHHHHHHHHHHHHHHH
T ss_pred ----CceEEeeecccCCC---hHHhcCcceEEEEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 35789999999965 1234556665555444444443137888888888877654
No 9
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}
Probab=97.90 E-value=0.00041 Score=67.22 Aligned_cols=187 Identities=13% Similarity=0.036 Sum_probs=114.0
Q ss_pred CCCCCeEEEEEEEecCCcEEEEeccccccchhhHHHHHHHHHHHHhcCCCcCCCCCCCCcccC-CC-C-----CCCCC--
Q 039488 43 SNGCPMLRVQATFFKCGGLAITVCTCHKLIDGASLRIFVDSWATTARADNQLSGSSNNKEVTP-RF-V-----TSTIF-- 113 (356)
Q Consensus 43 ~~~~Pll~vqvt~f~cgG~~l~v~~~H~v~Dg~~~~~fl~~wa~~~rg~~~~~~~~~~~~~~P-~~-d-----r~~l~-- 113 (356)
....|++++.+.... ++-.|-+.+||.++||.|+..|++.+.+.+++.... ........+ .+ + +..+.
T Consensus 122 l~~~pl~r~~l~~~~-~~~~l~l~~HH~i~Dg~S~~~l~~el~~~Y~~~~~g--~~~~l~~~~~~y~~~~~~~~~~~~~~ 198 (466)
T 2xhg_A 122 LQEGPLVKVALFQTL-HGDHLFLAIHHLVVDGISWRILFEDLATGYAQALAG--QAISLPEKTDSFQSWSQWLQEYANEA 198 (466)
T ss_dssp TTTCCCEEEEEEEET-TEEEEEEEEEGGGCCHHHHHHHHHHHHHHHHHHHTT--CCCCCCCCCSCHHHHHHHHHHHTTSH
T ss_pred CCCCCeEEEEEEEcC-CCCEEEEEeeeeeechhhHHHHHHHHHHHHHHHHcC--CCCCCCCCCCCHHHHHHHHHHHhcCc
Confidence 455788988888877 555577999999999999999999999988642100 000000111 11 0 00000
Q ss_pred ----------------CCCCCCCCCCCC---CCCceEEEEEeCHHhHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhh
Q 039488 114 ----------------PASESFVAAPSH---ISPVKANRFVFDAKKIDELKAKVASPTVPRPTRVEALTALIWKCARAAS 174 (356)
Q Consensus 114 ----------------~~~~~P~~~p~~---~~~~~~~~~~~~~~~i~~Lk~~a~~~~~~~~St~dal~A~lW~~~~~ar 174 (356)
++..+|...+.+ ........+.++.+..++|++.+... ..+|.++++.|.+-..+.+-.
T Consensus 199 ~~~~~~~~W~~~l~~~~~~~lp~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~--~~~t~~~~llaa~~~~l~~~~ 276 (466)
T 2xhg_A 199 DLLSEIPYWESLESQAKNVSLPKDYEVTDCKQKSVRNMRIRLHPEETEQLLKHANQA--YQTEINDLLLAALGLAFAEWS 276 (466)
T ss_dssp HHHTTHHHHHHHHHHCCCCCCCCSSCCSSCBGGGEEEEEEECCHHHHHHHHHTGGGT--TTCCHHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHhhccCCcccCCccccccccccccceEEEEEcCHHHHHHHHHHhHHh--hCCCHHHHHHHHHHHHHHHHh
Confidence 111112111111 22345678899999999998877432 347899999888666666543
Q ss_pred cccCCCCCcceEEEEeecccccCC-CCCCCCcchhhhhhhhccCchhhhhHHHHHHHHHHHHHHHh
Q 039488 175 RSNLGYSRPSLSVQAIDVRAVAEP-PLPDNSVGNSVAYLTAQASEKETETLQDLVCSLRKAKAEFR 239 (356)
Q Consensus 175 ~~~~~~~~~~~l~~~vd~R~rl~p-plp~~Y~GN~~~~~~~~~~~~~~~~L~~~A~~ir~ai~~~~ 239 (356)
+ .....+.++++.|....+ +--.+-+|+.+.....++.+..-.++.+++..|++.+....
T Consensus 277 ~-----~~dv~ig~~~~gR~~~~~~~~~~~~vG~f~n~lplr~~~~~~~~~~~~l~~v~~~~~~~~ 337 (466)
T 2xhg_A 277 K-----LAQIVIHLEGHGREDIIEQANVARTVGWFTSQYPVLLDLKQTAPLSDYIKLTKENMRKIP 337 (466)
T ss_dssp C-----CSEEEEEEEECCCCSCSTTCCCTTCCSCCCEEEEEEEECSCCCSHHHHHHHHHHHHHHSG
T ss_pred C-----CCceEEEecCCCCCccccCCCccccccceeeeccEEEecCCCCCHHHHHHHHHHHHHhCc
Confidence 2 246788999999976421 12345566655544444443321278888888888877653
No 10
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=97.88 E-value=0.00014 Score=71.21 Aligned_cols=181 Identities=10% Similarity=0.059 Sum_probs=109.3
Q ss_pred CCCCCeEEEEEEEecCCcEEEEeccccccchhhHHHHHHHHHHHHhcCCCcCCCCCCCCcccCC-----CCCC--CCCCC
Q 039488 43 SNGCPMLRVQATFFKCGGLAITVCTCHKLIDGASLRIFVDSWATTARADNQLSGSSNNKEVTPR-----FVTS--TIFPA 115 (356)
Q Consensus 43 ~~~~Pll~vqvt~f~cgG~~l~v~~~H~v~Dg~~~~~fl~~wa~~~rg~~~~~~~~~~~~~~P~-----~dr~--~l~~~ 115 (356)
....|++++.+.....+...|.+.+||.++||.|+..|++.+.+.+.|.. .+ .+. +.+. .+...
T Consensus 116 l~~~pl~r~~l~~~~~~~~~l~l~~HH~i~Dg~S~~~l~~~l~~~Y~g~~-------~~--~~~~~~~~~~~~~~~~~~~ 186 (493)
T 4hvm_A 116 PERDPLVRLHLVRLSETDVVLGVVAHQMLLDARSRYMVLGAVWQAYYGRF-------RP--AQYRDFAEVADFHPLDRET 186 (493)
T ss_dssp TTTSCSEEEEEEECSSSEEEEEEEEETTTCCHHHHHHHHHHHHHHHTTCC-------CG--GGSBCGGGTTTCCTTCSHH
T ss_pred CCCCCeEEEEEEEECCCcEEEEEecchhhccHHHHHHHHHHHHHHhCCCC-------CC--cCHHHHHHHHhhhhcccCh
Confidence 45568888888777756689999999999999999999999999997742 11 111 1111 11000
Q ss_pred -------------CCCCCCC--CCCCCCceEEEEEeCHHhHHHHHHHhcCCCCCCCC--HHHHHHHHHHHHHHHhhcc--
Q 039488 116 -------------SESFVAA--PSHISPVKANRFVFDAKKIDELKAKVASPTVPRPT--RVEALTALIWKCARAASRS-- 176 (356)
Q Consensus 116 -------------~~~P~~~--p~~~~~~~~~~~~~~~~~i~~Lk~~a~~~~~~~~S--t~dal~A~lW~~~~~ar~~-- 176 (356)
.+.|... |.+........+.++.+..++|++.|.. ..+| .+.++.|.+-..+.+-+.-
T Consensus 187 ~~~~~~~~W~~~l~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~l~~~a~~---~~vt~~~~~~l~aa~a~~L~~~~~~~~ 263 (493)
T 4hvm_A 187 VRVARHRWWSRRLPALPVRGGDGGPVGPPETSRLRVPGSRWQALTEPGGP---LGGNGSLAMAALTAWWLWTQGAGTGTD 263 (493)
T ss_dssp HHHHHHHHHHHHGGGSCCCC-------CCEEEEEEEEHHHHHHHHCC---------CHHHHHHHHHHHHHHHC-------
T ss_pred hhHHHHHHHHHhccCCCCCCCCCCCCCCCeeEEEEcCHHHHHHHHHHHHH---cCCCchHHHHHHHHHHHHHHHhhhccc
Confidence 0111111 1122226678889999999999987764 3588 9999988766555544100
Q ss_pred ----cCCCCCcceEEEEeecccccCCCCCCCCcchhhhhhhhccCchh--hhhHHHHHHHHHHHHHHH
Q 039488 177 ----NLGYSRPSLSVQAIDVRAVAEPPLPDNSVGNSVAYLTAQASEKE--TETLQDLVCSLRKAKAEF 238 (356)
Q Consensus 177 ----~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~~~~~~~~~~~~~--~~~L~~~A~~ir~ai~~~ 238 (356)
.........+.++++.|.. +--.+.+|+++-....++..+. -.++.+++..+++.+.+.
T Consensus 264 ~~~~~~~g~~dv~~g~~~~gR~~---~~~~~~vG~f~n~lplr~~~~~~~~~t~~~~l~~v~~~~~~~ 328 (493)
T 4hvm_A 264 TGAGTGTGKDSLYLSTEVDLRDH---LQLGSVVGPLTDRVVFGVDLTGLREPSFRDLMSRTQAGFLDA 328 (493)
T ss_dssp ---------CEEEEEEEEEHHHH---TTCCSBCSCCEEEEEEEEECTTCSSCBHHHHHHHHHHHHHHH
T ss_pred ccccCcCCCCCEEEEeeccCCCC---cchhcCeEeeeceeEEEEecCCCcCCCHHHHHHHHHHHHHHH
Confidence 0011256889999999966 2345666776655544444443 236778888887776553
No 11
>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivaleno toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A*
Probab=97.62 E-value=0.00073 Score=66.98 Aligned_cols=151 Identities=14% Similarity=0.062 Sum_probs=94.9
Q ss_pred cEEEEeccccccchhhHHHHHHHHHHHHhcCCCcCCCCCCCCcccCCCC----CCCCCCCC----CCCCC----------
Q 039488 60 GLAITVCTCHKLIDGASLRIFVDSWATTARADNQLSGSSNNKEVTPRFV----TSTIFPAS----ESFVA---------- 121 (356)
Q Consensus 60 G~~l~v~~~H~v~Dg~~~~~fl~~wa~~~rg~~~~~~~~~~~~~~P~~d----r~~l~~~~----~~P~~---------- 121 (356)
-.-|.+.+||.++||.|...|++.+-+........ + .....|.++ ...|.||- ..|..
T Consensus 177 ~~~lv~~~~H~~~DG~g~~~f~~~ll~~L~~~~~~--~--~~~~~~~~~~g~E~~~L~P~~e~~~~~p~~~~~~e~~~~~ 252 (519)
T 3fot_A 177 TVEILFHSNHLFWDGIGCRKFVGDLFRLVGSYIGR--S--DSREMKKIQWGQEIKNLSPPVVDSLKLDINTLGSEFDDKC 252 (519)
T ss_dssp EEEEEEEECGGGCCHHHHHHHHHHHHHHHTTSTTC-----CGGGSCCCCTTTTGGGSCCCTGGGBSSCGGGCCHHHHHHH
T ss_pred eEEEEEEeCceeEchHhHHHHHHHHHHHHHhhhcc--C--CccCCCcCCCCcccccCCcCHHHHhCCCCCCCCHHHHHHH
Confidence 46778889999999999999999998877642100 0 011122221 11222221 11100
Q ss_pred --------------C-CCC--CCCceEEEEEeCHHhHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhhccc-CCCCCc
Q 039488 122 --------------A-PSH--ISPVKANRFVFDAKKIDELKAKVASPTVPRPTRVEALTALIWKCARAASRSN-LGYSRP 183 (356)
Q Consensus 122 --------------~-p~~--~~~~~~~~~~~~~~~i~~Lk~~a~~~~~~~~St~dal~A~lW~~~~~ar~~~-~~~~~~ 183 (356)
. |.. ...-....+.|++++.++|++.|....++.+|-+.+|.|.+-.++.+..... ......
T Consensus 253 ~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ls~~~t~~L~~~ck~~~~~g~Tvt~~l~Aa~~~al~~~~~~~~~~~~~~ 332 (519)
T 3fot_A 253 TEYTSALVANYKSRGMKFQPGLALPRCVIHKLSADESIDIVKAVKTRLGPGFTISHLTQAAIVLALLDHLKPNDLSDDEV 332 (519)
T ss_dssp HHHHHHHHHHHHSCCSBCCCCCCCEEEEEEECCHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHC----CCTTCC
T ss_pred HHHHHHhhcCCCcccCCCCCCCCCcceEEEEcCHHHHHHHHHHHHhcCCCCeeHHHHHHHHHHHHHHhhcCCcccCCCcc
Confidence 0 111 2234457789999999999999986544578999999887777766642210 111235
Q ss_pred ceEEEEeecccccCCCCCCCCcchhhhhhhh
Q 039488 184 SLSVQAIDVRAVAEPPLPDNSVGNSVAYLTA 214 (356)
Q Consensus 184 ~~l~~~vd~R~rl~pplp~~Y~GN~~~~~~~ 214 (356)
..+.++||+|+.+.++.-.+|||.+......
T Consensus 333 ~~~~~pvnlR~~l~~~~~~n~~~~~~~~~~~ 363 (519)
T 3fot_A 333 FISPTSVDGRRWLREDIASNFYAMCQTAAVV 363 (519)
T ss_dssp EEEEEEEECGGGBCHHHHTSCCSCCEEEEEE
T ss_pred EEEEeeeeccccCCCcccccccceeeeeeee
Confidence 7899999999999865556788887765444
No 12
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=97.52 E-value=0.0014 Score=72.05 Aligned_cols=184 Identities=12% Similarity=-0.012 Sum_probs=113.8
Q ss_pred CCCCCeEEEEEEEecCCcEEEEeccccccchhhHHHHHHHHHHHHhcCCCcCCCCCCCCcccCCC-C-----CC------
Q 039488 43 SNGCPMLRVQATFFKCGGLAITVCTCHKLIDGASLRIFVDSWATTARADNQLSGSSNNKEVTPRF-V-----TS------ 110 (356)
Q Consensus 43 ~~~~Pll~vqvt~f~cgG~~l~v~~~H~v~Dg~~~~~fl~~wa~~~rg~~~~~~~~~~~~~~P~~-d-----r~------ 110 (356)
....|++++.+.....+...|.+.+||.++||.|+..|++.+.+++++.... ........+.+ | ++
T Consensus 121 l~~~pl~r~~l~~~~~~~~~l~~~~HHii~DG~S~~~l~~el~~~Y~~~~~g--~~~~l~~~~~y~d~~~~~~~~~~~~~ 198 (1304)
T 2vsq_A 121 LTRDIPMRAAIFKKAEESFEWVWSYHHIILDGWCFGIVVQDLFKVYNALREQ--KPYSLPPVKPYKDYIKWLEKQDKQAS 198 (1304)
T ss_dssp TTTSCSEEEEEEEEETTEEEEEEEEEGGGCCHHHHHHHHHHHHHHHHHHHTT--CCCCCCCCCCTHHHHHHHHTSCHHHH
T ss_pred CCCCCcEEEEEEEECCCcEEEEEecCceeechhhHHHHHHHHHHHHHHhhcC--CCCCCCCcccHHHHHHHHhcchhhHH
Confidence 4557899988888876788999999999999999999999999988642100 00000011111 1 00
Q ss_pred ------CC---CCCCCCCCCC-CC-CCCCceEEEEEeCHHhHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhhcccCC
Q 039488 111 ------TI---FPASESFVAA-PS-HISPVKANRFVFDAKKIDELKAKVASPTVPRPTRVEALTALIWKCARAASRSNLG 179 (356)
Q Consensus 111 ------~l---~~~~~~P~~~-p~-~~~~~~~~~~~~~~~~i~~Lk~~a~~~~~~~~St~dal~A~lW~~~~~ar~~~~~ 179 (356)
.+ .++..+|... +. .........+.++++..++||+.|.. ..+|.+.+|.|.+-..+.|--+
T Consensus 199 ~~yW~~~L~~~~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~a~~---~~~T~~~vllaa~a~~L~r~tg---- 271 (1304)
T 2vsq_A 199 LRYWREYLEGFEGQTTFAEQRKKQKDGYEPKELLFSPSEAETKAFTELAKS---QHTTLSTALQAVWSVLISRYQQ---- 271 (1304)
T ss_dssp HHHHHHHHTTCCCCCTTTTTCCCSSCCCCEEEEEECCCHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHhCCCCccccCCCCCCccccccCcceEEEecCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHhcC----
Confidence 00 0011122111 11 12344567788999999999998875 3589999998875555554422
Q ss_pred CCCcceEEEEeecccccCCCCCCCCcchhhhhhhhccCchhhhhHHHHHHHHHHHHHH
Q 039488 180 YSRPSLSVQAIDVRAVAEPPLPDNSVGNSVAYLTAQASEKETETLQDLVCSLRKAKAE 237 (356)
Q Consensus 180 ~~~~~~l~~~vd~R~rl~pplp~~Y~GN~~~~~~~~~~~~~~~~L~~~A~~ir~ai~~ 237 (356)
.....+..+++.|.+-.+. -++.+|+.+-....++.++.-.++.++...+++...+
T Consensus 272 -~~dvv~G~pvsgR~~~~~~-~~~~vG~fvntlplr~~~~~~~s~~~ll~~v~~~~~~ 327 (1304)
T 2vsq_A 272 -SGDLAFGTVVSGRPAEIKG-VEHMVGLFINVVPRRVKLSEGITFNGLLKRLQEQSLQ 327 (1304)
T ss_dssp -CSEEEEEEEECCCCTTSTT-GGGCCSSCCEEEEEEEECCTTCBHHHHHHHHHHHHHH
T ss_pred -CCCEEEEEEeCCCCccchh-hhcccccceeEEEEEecCCCCCcHHHHHHHHHHHHHH
Confidence 2468899999999753221 1344555554444444433212788888888887655
No 13
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=82.36 E-value=0.94 Score=39.07 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=33.0
Q ss_pred CCCeEEEEEEEecCCc--EEEEeccccccchhhHHHHHHHHHHHHhc
Q 039488 45 GCPMLRVQATFFKCGG--LAITVCTCHKLIDGASLRIFVDSWATTAR 89 (356)
Q Consensus 45 ~~Pll~vqvt~f~cgG--~~l~v~~~H~v~Dg~~~~~fl~~wa~~~r 89 (356)
..|++.+--..-+.|. +-|++++||.++||.-+..|++.+.+...
T Consensus 163 ~~PIi~~G~~~~~~~~~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le 209 (213)
T 3cla_A 163 FAPIITMAKYQQEGDRLLLPLSVQVHHAVCDGFHVARFINRLQELCN 209 (213)
T ss_dssp CSCEEEEECCEEETTEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHT
T ss_pred cccEEEeeEEEEECCeEEEEEEEEEcccccChHHHHHHHHHHHHHHH
Confidence 3587764221112133 68899999999999999999999998753
No 14
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=81.51 E-value=1.1 Score=38.89 Aligned_cols=44 Identities=23% Similarity=0.428 Sum_probs=31.6
Q ss_pred CCCeEEEEEEEecCCc--EEEEeccccccchhhHHHHHHHHHHHHh
Q 039488 45 GCPMLRVQATFFKCGG--LAITVCTCHKLIDGASLRIFVDSWATTA 88 (356)
Q Consensus 45 ~~Pll~vqvt~f~cgG--~~l~v~~~H~v~Dg~~~~~fl~~wa~~~ 88 (356)
..|++.+=-..-+.|. +-|++++||.++||.-+..|++.+.+..
T Consensus 171 ~~PIi~~Gk~~~~~~r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~l 216 (217)
T 2i9d_A 171 NYPLLNAGKAIIREGRLVMPIAMTIHHGFIDGHHLSLFYKKVEDFL 216 (217)
T ss_dssp SSCEEEECCCEEETTEEEEEEEEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred eEEEEecceEEEECCcEEEEEEEEecchhhChHHHHHHHHHHHHHh
Confidence 4687754111112132 6789999999999999999999998764
No 15
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=81.27 E-value=1.1 Score=38.86 Aligned_cols=45 Identities=9% Similarity=0.252 Sum_probs=33.5
Q ss_pred CCeEEEEEEEecCCc--EEEEeccccccchhhHHHHHHHHHHHHhcC
Q 039488 46 CPMLRVQATFFKCGG--LAITVCTCHKLIDGASLRIFVDSWATTARA 90 (356)
Q Consensus 46 ~Pll~vqvt~f~cgG--~~l~v~~~H~v~Dg~~~~~fl~~wa~~~rg 90 (356)
.|++.+--..-+.|. +-|++++||.++||.-+..|++.+.+....
T Consensus 168 ~pIi~~G~~~~~~~r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~ 214 (219)
T 1q23_A 168 APVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDE 214 (219)
T ss_dssp SCEEEECCCEEETTEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEecccEEEECCcEEEEEEEEEEchhhChHHHHHHHHHHHHHHhC
Confidence 577765222223132 788999999999999999999999987643
No 16
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=79.66 E-value=1.4 Score=38.74 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=27.0
Q ss_pred EEEEeccccccchhhHHHHHHHHHHHHhc
Q 039488 61 LAITVCTCHKLIDGASLRIFVDSWATTAR 89 (356)
Q Consensus 61 ~~l~v~~~H~v~Dg~~~~~fl~~wa~~~r 89 (356)
+-|+++++|.++||.-+..|++.+.+...
T Consensus 204 m~lsls~DHRviDGa~aa~Fl~~lk~~le 232 (239)
T 3b8k_A 204 MSVTLSCDHRVVDGAVGAQWLAEFRKYLE 232 (239)
T ss_dssp EEEEECCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcceeechHHHHHHHHHHHHHHh
Confidence 78999999999999999999999998764
No 17
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=78.35 E-value=1.5 Score=38.59 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=27.2
Q ss_pred EEEEeccccccchhhHHHHHHHHHHHHhcC
Q 039488 61 LAITVCTCHKLIDGASLRIFVDSWATTARA 90 (356)
Q Consensus 61 ~~l~v~~~H~v~Dg~~~~~fl~~wa~~~rg 90 (356)
+-|+++++|.++||.-+..|++.+.+....
T Consensus 208 m~lsls~DHRviDGa~aa~Fl~~lk~~le~ 237 (243)
T 1dpb_A 208 LPLSLSYDCRVINGAAAARFTKRLGDLLAD 237 (243)
T ss_dssp EEEEEEEETTTSCHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEECcccccHHHHHHHHHHHHHHHhC
Confidence 579999999999999999999999987653
No 18
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=78.34 E-value=1.3 Score=38.51 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=27.4
Q ss_pred EEEEeccccccchhhHHHHHHHHHHHHhcC
Q 039488 61 LAITVCTCHKLIDGASLRIFVDSWATTARA 90 (356)
Q Consensus 61 ~~l~v~~~H~v~Dg~~~~~fl~~wa~~~rg 90 (356)
+-|+++++|.+.||.-+..|++.+.+....
T Consensus 187 m~lsls~DHRviDGa~aa~Fl~~l~~~le~ 216 (224)
T 3rqc_A 187 MYLSLSCDHRLIDGAVATRFIVDLKKVIED 216 (224)
T ss_dssp CCEEEEEETTTSCHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEeccceecHHHHHHHHHHHHHHHhC
Confidence 458999999999999999999999998765
No 19
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=78.24 E-value=1.5 Score=38.28 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=27.3
Q ss_pred EEEEeccccccchhhHHHHHHHHHHHHhcC
Q 039488 61 LAITVCTCHKLIDGASLRIFVDSWATTARA 90 (356)
Q Consensus 61 ~~l~v~~~H~v~Dg~~~~~fl~~wa~~~rg 90 (356)
+-|+++++|.++||.-...|++.+.+....
T Consensus 196 m~lsls~DHRviDGa~aa~Fl~~lk~~le~ 225 (233)
T 1scz_A 196 MYLALSYDHRLIDGRESVGFLVTIKELLED 225 (233)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEcceeechHHHHHHHHHHHHHHhC
Confidence 569999999999999999999999988754
No 20
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=77.06 E-value=1.7 Score=38.71 Aligned_cols=30 Identities=23% Similarity=0.560 Sum_probs=27.0
Q ss_pred EEEEeccccccchhhHHHHHHHHHHHHhcC
Q 039488 61 LAITVCTCHKLIDGASLRIFVDSWATTARA 90 (356)
Q Consensus 61 ~~l~v~~~H~v~Dg~~~~~fl~~wa~~~rg 90 (356)
+-|+++++|.++||.-...|++.+.+.+..
T Consensus 224 m~lsls~DHRviDGa~aa~Fl~~lk~~Le~ 253 (262)
T 2ii3_A 224 MNVSWSADHRIIDGATVSRFSNLWKSYLEN 253 (262)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHHS
T ss_pred eEEEEEECcceecHHHHHHHHHHHHHHHhC
Confidence 569999999999999999999999987653
No 21
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=73.27 E-value=2.5 Score=37.53 Aligned_cols=30 Identities=13% Similarity=0.331 Sum_probs=27.6
Q ss_pred EEEEeccccccchhhHHHHHHHHHHHHhcC
Q 039488 61 LAITVCTCHKLIDGASLRIFVDSWATTARA 90 (356)
Q Consensus 61 ~~l~v~~~H~v~Dg~~~~~fl~~wa~~~rg 90 (356)
+-|+++++|.+.||.-+..|++.+.+..-.
T Consensus 210 m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~ 239 (256)
T 3mae_A 210 VNLCLSIDHRILDGLLAGKFLQAIKANVEK 239 (256)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEccccccHHHHHHHHHHHHHHHhC
Confidence 459999999999999999999999999865
No 22
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=72.21 E-value=2.7 Score=37.12 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=27.3
Q ss_pred EEEEeccccccchhhHHHHHHHHHHHHhcC
Q 039488 61 LAITVCTCHKLIDGASLRIFVDSWATTARA 90 (356)
Q Consensus 61 ~~l~v~~~H~v~Dg~~~~~fl~~wa~~~rg 90 (356)
+-|+++++|.+.||.-+..|++.+.+....
T Consensus 205 m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~ 234 (250)
T 3l60_A 205 MTLTCVFDHRVVDGAQVAQFMCELRDLIES 234 (250)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHHS
T ss_pred eEEEEEecccccCHHHHHHHHHHHHHHHhC
Confidence 468999999999999999999999998764
No 23
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=54.51 E-value=2.6 Score=40.34 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=0.0
Q ss_pred EEEEeccccccchhhHHHHHHHHHHHHhcC
Q 039488 61 LAITVCTCHKLIDGASLRIFVDSWATTARA 90 (356)
Q Consensus 61 ~~l~v~~~H~v~Dg~~~~~fl~~wa~~~rg 90 (356)
+-|+++++|.++||.-...|++.+.+.+..
T Consensus 391 m~lsls~DHRviDG~~aa~Fl~~lk~~Le~ 420 (428)
T 3dva_I 391 LALSLSFDHRMIDGATAQKALNHIKRLLSD 420 (428)
T ss_dssp ------------------------------
T ss_pred EEEEEEecccccchHHHHHHHHHHHHHHhC
Confidence 359999999999999999999999987654
No 24
>2xl1_A Arginine attenuator peptide; translation, antibiotic, ribosome, cytomegalovirus; NMR {Neurospora crassa}
Probab=52.19 E-value=8.8 Score=20.24 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=15.7
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 039488 154 PRPTRVEALTALIWKCARA 172 (356)
Q Consensus 154 ~~~St~dal~A~lW~~~~~ 172 (356)
+-.++.|-|+-++|+++..
T Consensus 6 svftsqdylsdhlwralna 24 (26)
T 2xl1_A 6 SVFTSQDYLSDHLWRALNA 24 (26)
T ss_pred ceeecHHHHHHHHHHHHhc
Confidence 4467899999999998863
No 25
>2p63_A Cell division control protein 4; ubiquitination, helix bundle, SCF complex, cell cycle; 2.67A {Saccharomyces cerevisiae}
Probab=32.61 E-value=24 Score=22.84 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=27.6
Q ss_pred CCCCCCcchhhhhhhhccCchhhhhHHHHHHHHHHHHH
Q 039488 199 PLPDNSVGNSVAYLTAQASEKETETLQDLVCSLRKAKA 236 (356)
Q Consensus 199 plp~~Y~GN~~~~~~~~~~~~~~~~L~~~A~~ir~ai~ 236 (356)
.+|..+|-|.++...+.+...| |+++...|++.++
T Consensus 20 ~lp~~~~knLiF~Lvs~m~Rse---LSDl~TlikDNLK 54 (56)
T 2p63_A 20 NLPHAYFKNLLFRLVANMDRSE---LSDLGTLIKDNLK 54 (56)
T ss_dssp GSCTTHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccHHH---HHHHHHHHHhhhc
Confidence 3788999999999888888775 7777777777654
No 26
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=31.37 E-value=29 Score=37.31 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=26.6
Q ss_pred EEEEeccccccchhhHHHHHHHHHHHHhc
Q 039488 61 LAITVCTCHKLIDGASLRIFVDSWATTAR 89 (356)
Q Consensus 61 ~~l~v~~~H~v~Dg~~~~~fl~~wa~~~r 89 (356)
+-|+++++|.|.||.-...||+.+.+...
T Consensus 192 m~lsls~DHRviDGa~aa~FL~~lk~~Le 220 (1113)
T 2xt6_A 192 ITLTSTYDHRIIQGAESGDFLRTIHQLLL 220 (1113)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHTT
T ss_pred eEEEEEECcceechHHHHHHHHHHHHHHh
Confidence 77999999999999999999999988764
No 27
>2k1o_A Putative; repressor, transcriptional regulator, D binding, ribbon-helix-helix, HP0564, JHP0511, unknown funct regulation; NMR {Helicobacter pylori}
Probab=30.56 E-value=83 Score=20.68 Aligned_cols=44 Identities=9% Similarity=0.077 Sum_probs=32.4
Q ss_pred CCceEEEEEeCHHhHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhhccc
Q 039488 127 SPVKANRFVFDAKKIDELKAKVASPTVPRPTRVEALTALIWKCARAASRSN 177 (356)
Q Consensus 127 ~~~~~~~~~~~~~~i~~Lk~~a~~~~~~~~St~dal~A~lW~~~~~ar~~~ 177 (356)
.+.-...|+|++++-+.|.+.|.++. |.+..+|=|.+.++-...
T Consensus 13 k~~~~Vs~Y~SkEey~~L~klA~eE~-------eSV~sfIKR~IlK~l~yk 56 (66)
T 2k1o_A 13 KRNFSVTFYLSKEEHDVLRRLADEEV-------ESVNSFVKRHILKTIIYK 56 (66)
T ss_dssp CCCEEEEEEEEHHHHHHHHHHHHTTC-------SCHHHHHHHHHHHHHCSS
T ss_pred ccceEEEEEecHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 34557789999999999999998653 235567777777775543
No 28
>2v4x_A JSRV capsid, capsid protein P27; virion, zinc-finger, metal-binding, CAPS protein, structural protein, viral nucleoprotein; HET: MSE; 1.5A {Jaagsiekte sheep retrovirus}
Probab=25.07 E-value=62 Score=25.60 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=28.3
Q ss_pred EEEeCHHhHHHHHHHhcCCC--------------CCCCCHHHHHHHHHHHHHHHhhc
Q 039488 133 RFVFDAKKIDELKAKVASPT--------------VPRPTRVEALTALIWKCARAASR 175 (356)
Q Consensus 133 ~~~~~~~~i~~Lk~~a~~~~--------------~~~~St~dal~A~lW~~~~~ar~ 175 (356)
.-.|+-+.|++||..|...+ ..+.+.+| |+.+.||..
T Consensus 11 ~~pl~~K~IkeLk~Av~~YGp~APyT~a~le~La~~~LtP~D------W~~lara~L 61 (140)
T 2v4x_A 11 YESLPFKQLKELKIACSQYGPTAPFTIAMIENLGTQALPPND------WKQTARACL 61 (140)
T ss_dssp ECCCCHHHHHHHHHHHHHTCTTSHHHHHHHHHHHTSCCCHHH------HHHHHHHHS
T ss_pred ccCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHhCCCChHH------HHHHHHHHc
Confidence 33577889999999998654 35677777 888888864
No 29
>2kgf_A Capsid protein P27; retrovirus capsid protein, N-terminal core domain (SCOP), viral protein; NMR {Mason-pfizer monkey virus}
Probab=21.76 E-value=71 Score=25.27 Aligned_cols=38 Identities=24% Similarity=0.194 Sum_probs=29.0
Q ss_pred EEEEeCHHhHHHHHHHhcCCC--------------CCCCCHHHHHHHHHHHHHHHhhc
Q 039488 132 NRFVFDAKKIDELKAKVASPT--------------VPRPTRVEALTALIWKCARAASR 175 (356)
Q Consensus 132 ~~~~~~~~~i~~Lk~~a~~~~--------------~~~~St~dal~A~lW~~~~~ar~ 175 (356)
..-.|+-+.|++||.+|...+ +.+.+.+| |+.+.||..
T Consensus 15 ~~~pl~~K~iKeLk~Av~~YGp~APyT~~lle~la~~~LtP~D------W~~lara~L 66 (140)
T 2kgf_A 15 HHNGFDFAVIKELKTAASQYGATAPYTLAIVESVADNWLTPTD------WNTLVRAVL 66 (140)
T ss_dssp EECCCCHHHHHHHHHHHHHTCTTSHHHHHHHHHHHTSBCCHHH------HHHHHHHHC
T ss_pred cccCCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHhCCCChHH------HHHHHHHHc
Confidence 344578889999999998654 45677777 999988864
No 30
>1x93_A Hypothetical protein HP0222; JHP0208, transcription, regula METJ, MNT, PArg, COPG, REPA; NMR {Helicobacter pylori} SCOP: a.43.1.3
Probab=21.22 E-value=63 Score=20.49 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=25.4
Q ss_pred eEEEEEeCHHhHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHh
Q 039488 130 KANRFVFDAKKIDELKAKVASPTVPRPTRVEALTALIWKCARAA 173 (356)
Q Consensus 130 ~~~~~~~~~~~i~~Lk~~a~~~~~~~~St~dal~A~lW~~~~~a 173 (356)
....|+||+++-+.|++.|.++.. .++ .+|=|.+.++
T Consensus 2 ~~Vs~Y~SkEey~~L~klA~eE~e-SV~------sfIKR~IlK~ 38 (55)
T 1x93_A 2 RAVSLYFSDEQYQKLEKMANEEEE-SVG------SYIKRYILKA 38 (55)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTTS-CTT------HHHHHHHHHH
T ss_pred ceEEEEecHHHHHHHHHHHHHHHH-HHH------HHHHHHHHHH
Confidence 356899999999999999976532 233 3445555554
No 31
>4ard_A Capsid protein P27; viral protein, retrovirus, GAG; 7.00A {Mason-pfizer monkey virus}
Probab=20.77 E-value=61 Score=24.75 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=23.4
Q ss_pred eCHHhHHHHHHHhcCCC--------------CCCCCHHHHHHHHHHHHHHHhhc
Q 039488 136 FDAKKIDELKAKVASPT--------------VPRPTRVEALTALIWKCARAASR 175 (356)
Q Consensus 136 ~~~~~i~~Lk~~a~~~~--------------~~~~St~dal~A~lW~~~~~ar~ 175 (356)
|.-+.|++||+.|...+ ...++.+| |+++.|+..
T Consensus 1 fd~k~iKdLKka~t~YG~ts~y~~~lL~~la~~~LtP~D------Wkslar~~L 48 (116)
T 4ard_A 1 FDFAVIKELKTAASQYGATAPYTLAIVESVADNWLTPTD------WNTLVRAVL 48 (116)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhccChHh------HHHHHHHHc
Confidence 34567899999997543 13445555 999988864
Done!