BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039489
(304 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F0R|A Chain A, Crystallographic Structure Of Human Tsg101 Uev Domain
pdb|2F0R|B Chain B, Crystallographic Structure Of Human Tsg101 Uev Domain
Length = 159
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 76/124 (61%), Gaps = 1/124 (0%)
Query: 40 LIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMES 99
L + + +I+ + L P ++ NDG S L+ GT+P+P++G TYNIP+ +WL+++
Sbjct: 34 LTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDT 93
Query: 100 YPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSRE 159
YP +PP +V PT M IK HV +G + +PYL W +P S+L+ L++ + F E
Sbjct: 94 YPYNPPICFVKPTSSMTIKTGK-HVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDE 152
Query: 160 PPLY 163
PP++
Sbjct: 153 PPVF 156
>pdb|1KPP|A Chain A, Structure Of The Tsg101 Uev Domain
pdb|1KPQ|A Chain A, Structure Of The Tsg101 Uev Domain
pdb|1M4P|A Chain A, Structure Of The Tsg101 Uev Domain In Complex With A Hiv-1
Ptap "late Domain" Peptide, Dyana Ensemble
pdb|1M4Q|A Chain A, Structure Of The Tsg101 Uev Domain In Complex With A Hiv-1
Ptap "late Domain" Peptide, Cns Ensemble
Length = 145
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 76/124 (61%), Gaps = 1/124 (0%)
Query: 40 LIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMES 99
L + + +I+ + L P ++ NDG S L+ GT+P+P++G TYNIP+ +WL+++
Sbjct: 20 LTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDT 79
Query: 100 YPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSRE 159
YP +PP +V PT M IK HV +G + +PYL W +P S+L+ L++ + F E
Sbjct: 80 YPYNPPICFVKPTSSMTIKTGK-HVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDE 138
Query: 160 PPLY 163
PP++
Sbjct: 139 PPVF 142
>pdb|1S1Q|A Chain A, Tsg101(Uev) Domain In Complex With Ubiquitin
pdb|1S1Q|C Chain C, Tsg101(Uev) Domain In Complex With Ubiquitin
Length = 145
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 73/124 (58%), Gaps = 1/124 (0%)
Query: 40 LIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMES 99
L + + +I+ + L P ++ NDG S L GT+P+P++G TYNIP+ +WL+++
Sbjct: 20 LTVRETVNVITLYKDLKPVLDSYVFNDGSSRELXNLTGTIPVPYRGNTYNIPICLWLLDT 79
Query: 100 YPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSRE 159
YP +PP +V PT IK HV +G + +PYL W +P S+L+ L++ F E
Sbjct: 80 YPYNPPICFVKPTSSXTIKTGK-HVDANGKIYLPYLHEWKHPQSDLLGLIQVXIVVFGDE 138
Query: 160 PPLY 163
PP++
Sbjct: 139 PPVF 142
>pdb|3P9G|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex With
Fa459 Peptide
pdb|3P9H|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex With
Fa258 Peptide
Length = 145
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 74/124 (59%), Gaps = 5/124 (4%)
Query: 40 LIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMES 99
L + + +I+ + L P ++ G S L+ GT+P+P++G TYNIP+ +WL+++
Sbjct: 24 LTVRETVNVITLYKDLKPVLDSY----GGSRELMNLTGTIPVPYRGNTYNIPICLWLLDT 79
Query: 100 YPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSRE 159
YP +PP +V PT M IK HV +G + +PYL W +P S+L+ L++ + F E
Sbjct: 80 YPYNPPICFVKPTSSMTIKTGK-HVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDE 138
Query: 160 PPLY 163
PP++
Sbjct: 139 PPVF 142
>pdb|3OBQ|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex With
A Human Hrs Psap Peptide
pdb|3OBS|A Chain A, Crystal Structure Of Tsg101 Uev Domain
pdb|3OBU|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex With
A Hiv-1 Ptap Peptide
pdb|3OBX|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex With
A Hiv-1 Gag P7a Mutant Peptide
Length = 146
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 69 SVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSG 128
S L+ GT+P+P++G TYNIP+ +WL+++YP +PP +V PT M IK HV +G
Sbjct: 50 SRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGK-HVDANG 108
Query: 129 LVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLY 163
+ +PYL W +P S+L+ L++ + F EPP++
Sbjct: 109 KIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVF 143
>pdb|3R3Q|A Chain A, Crystal Structure Of The Yeast Vps23 Uev Domain
pdb|3R42|A Chain A, Crystal Structure Of The Yeast Vps23 Uev Domain In Complex
With A Vps27 Psdp Peptide
Length = 162
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 7/122 (5%)
Query: 46 LTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVT-YNIPVIIWLMESYPRHP 104
L L+ F SL P+T FTH+DG LL GT+ G + ++IPVI+W+ YP P
Sbjct: 38 LALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKP 97
Query: 105 PCVYVN-PTRDM-IIKRPHP---HVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSRE 159
P + +N DM I P ++ +G +++P L W + NL+ +V+EL + E
Sbjct: 98 PFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHAWDPAAMNLIMVVQELMSLL-HE 156
Query: 160 PP 161
PP
Sbjct: 157 PP 158
>pdb|1UZX|A Chain A, A Complex Of The Vps23 Uev With Ubiquitin
Length = 169
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 13/125 (10%)
Query: 46 LTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVT-YNIPVIIWLMESYPRHP 104
L L+ F SL P+T FTH+DG LL GT+ G + ++IPVI W+ YP P
Sbjct: 44 LALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIXWVPSXYPVKP 103
Query: 105 PCVYVN--------PTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACF 156
P + +N + + I+ ++ +G +++P L W + NL+ +V+EL +
Sbjct: 104 PFISINLENFDXNTISSSLPIQE---YIDSNGWIALPILHCWDPAAXNLIXVVQELXSLL 160
Query: 157 SREPP 161
EPP
Sbjct: 161 -HEPP 164
>pdb|1BC5|A Chain A, Chemotaxis Receptor Recognition By Protein
Methyltransferase Cher
Length = 269
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 20/85 (23%)
Query: 69 SVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSG 128
SVNLL+ VP PF + + R+ + T++ I++R P + P G
Sbjct: 195 SVNLLEKQYNVPGPFDAI-------------FCRNVMIYFDKTTQEDILRRFVPLLKPDG 241
Query: 129 LVSIPYLQNWIYPSSNLVDLVRELS 153
L+ + S N +LVRE S
Sbjct: 242 LLFAGH-------SENFSNLVREFS 259
>pdb|1AF7|A Chain A, Cher From Salmonella Typhimurium
Length = 274
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 20/85 (23%)
Query: 69 SVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSG 128
SVNLL+ VP PF + + R+ + T++ I++R P + P G
Sbjct: 200 SVNLLEKQYNVPGPFDAI-------------FCRNVMIYFDKTTQEDILRRFVPLLKPDG 246
Query: 129 LVSIPYLQNWIYPSSNLVDLVRELS 153
L+ + S N +LVRE S
Sbjct: 247 LLFAGH-------SENFSNLVREFS 264
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 14/82 (17%)
Query: 60 ATFTHNDGRSVNLLQADGTVP----MPFQGVTYNIPVIIWLMESYPRHPP-CVYVNPTRD 114
A T N ++NL+ + +P P++G + + ++ + YP PP C + P
Sbjct: 26 AVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML--FKDDYPSSPPKCKFEPPLF- 82
Query: 115 MIIKRPHPHVTPSGLVSIPYLQ 136
HP+V PSG VS+ L+
Sbjct: 83 ------HPNVYPSGTVSLSILE 98
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 60 ATFTHNDGRSVNLLQADGTVP----MPFQGVTYNIPVIIWLMESYPRHPP-CVYVNPTRD 114
A T N ++NL+ + +P P++G + + ++ + YP PP C + P
Sbjct: 29 AVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML--FKDDYPSSPPKCKFEPPLF- 85
Query: 115 MIIKRPHPHVTPSGLVSIPYLQ 136
HP+V PSG V + L+
Sbjct: 86 ------HPNVAPSGTVCLSILE 101
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 77 GTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ 136
G PF+ T+ + + E YP PP V I K HP+V G + + LQ
Sbjct: 42 GPQETPFEDGTFKLS--LEFTEEYPNKPPTV------KFISKMFHPNVYADGSICLDILQ 93
Query: 137 NWIYPSSNLVDLVRELSACFSREPP 161
N P+ ++ ++ + + P
Sbjct: 94 NRWSPTYDVAAILTSIQSLLDEPNP 118
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 82 PFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYP 141
PF+ T+ + +I E YP PP V + K HP+V G + + LQN P
Sbjct: 47 PFEDGTFKL--VIEFSEEYPNKPPTVR------FLSKMFHPNVYADGSICLDILQNRWSP 98
Query: 142 SSNLVDLVRELSACFSREPP 161
+ ++ ++ + + P
Sbjct: 99 TYDVSSILTSIQSLLDEPNP 118
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 60 ATFTHNDGRSVNLLQADGTVP----MPFQGVTYNIPVIIWLMESYPRHPP-CVYVNPTRD 114
A T N ++NL+ + +P P++G + + ++ + YP PP C + P
Sbjct: 26 AVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML--FKDDYPSSPPKCKFEPPLF- 82
Query: 115 MIIKRPHPHVTPSGLVSIPYLQ 136
HP+V PSG V + L+
Sbjct: 83 ------HPNVYPSGTVCLSILE 98
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 77 GTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ 136
G PF+ T+ + + E YP PP V I K HP+V G + + LQ
Sbjct: 45 GPQETPFEDGTFKLSLE--FTEEYPNKPPTV------KFISKMFHPNVYADGSICLDILQ 96
Query: 137 NWIYPSSNLVDLVRELSACFSREPP 161
N P+ ++ ++ + + P
Sbjct: 97 NRWSPTYDVAAILTSIQSLLDEPNP 121
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 60 ATFTHNDGRSVNLLQADGTVP----MPFQGVTYNIPVIIWLMESYPRHPP-CVYVNPTRD 114
A T N ++NL+ + +P P++G + + ++ + YP PP C + P
Sbjct: 28 AVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML--FKDDYPSSPPKCKFEPPLF- 84
Query: 115 MIIKRPHPHVTPSGLVSIPYLQ 136
HP+V PSG V + L+
Sbjct: 85 ------HPNVYPSGTVCLSILE 100
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 60 ATFTHNDGRSVNLLQADGTVP----MPFQGVTYNIPVIIWLMESYPRHPP-CVYVNPTRD 114
A T N ++NL+ + +P P++G + + ++ + YP PP C + P
Sbjct: 27 AVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML--FKDDYPSSPPKCKFEPPLF- 83
Query: 115 MIIKRPHPHVTPSGLVSIPYLQ 136
HP+V PSG V + L+
Sbjct: 84 ------HPNVYPSGTVCLSILE 99
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 60 ATFTHNDGRSVNLLQADGTVP----MPFQGVTYNIPVIIWLMESYPRHPP-CVYVNPTRD 114
A T N ++NL+ + +P P++G + + ++ + YP PP C + P
Sbjct: 28 AVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML--FKDDYPSSPPKCKFEPPLF- 84
Query: 115 MIIKRPHPHVTPSGLVSIPYLQ 136
HP+V PSG V + L+
Sbjct: 85 ------HPNVYPSGTVCLSILE 100
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 60 ATFTHNDGRSVNLLQADGTVP----MPFQGVTYNIPVIIWLMESYPRHPP-CVYVNPTRD 114
A T N ++NL+ + +P P++G + + ++ + YP PP C + P
Sbjct: 26 AVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML--FKDDYPSSPPKCKFEPPLF- 82
Query: 115 MIIKRPHPHVTPSGLVSIPYLQ 136
HP+V PSG V + L+
Sbjct: 83 ------HPNVYPSGTVXLSILE 98
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 60 ATFTHNDGRSVNLLQADGTVP----MPFQGVTYNIPVIIWLMESYPRHPP-CVYVNPTRD 114
A T N ++NL+ + +P P++G + + ++ + YP PP C + P
Sbjct: 31 AVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML--FKDDYPSSPPKCKFEPPLF- 87
Query: 115 MIIKRPHPHVTPSGLVSIPYLQ 136
HP+V PSG V + L+
Sbjct: 88 ------HPNVYPSGTVCLSILE 103
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 60 ATFTHNDGRSVNLLQADGTVP----MPFQGVTYNIPVIIWLMESYPRHPP-CVYVNPTRD 114
A T N ++NL+ + +P P++G + + ++ + YP PP C + P
Sbjct: 29 AVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML--FKDDYPSSPPKCKFEPPLF- 85
Query: 115 MIIKRPHPHVTPSGLVSIPYLQ 136
HP+V PSG V + L+
Sbjct: 86 ------HPNVYPSGTVCLSILE 101
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 60 ATFTHNDGRSVNLLQADGTVP----MPFQGVTYNIPVIIWLMESYPRHPP-CVYVNPTRD 114
A T N ++NL+ + +P P++G + + ++ + YP PP C + P
Sbjct: 29 AVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML--FKDDYPSSPPKCKFEPPLF- 85
Query: 115 MIIKRPHPHVTPSGLVSIPYLQ 136
HP+V PSG V + L+
Sbjct: 86 ------HPNVYPSGTVCLSILE 101
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 60 ATFTHNDGRSVNLLQADGTVP----MPFQGVTYNIPVIIWLMESYPRHPP-CVYVNPTRD 114
A T N ++NL+ + +P P++G + + ++ + YP PP C + P
Sbjct: 29 AVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML--FKDDYPSSPPKCKFEPPLF- 85
Query: 115 MIIKRPHPHVTPSGLVSIPYLQ 136
HP+V PSG V + L+
Sbjct: 86 ------HPNVYPSGTVCLSILE 101
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 14/82 (17%)
Query: 60 ATFTHNDGRSVNLLQADGTVP----MPFQGVTYNIPVIIWLMESYPRHPP-CVYVNPTRD 114
A T N ++NL+ + +P P++G + + ++ + YP PP C + P
Sbjct: 29 AVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML--FKDDYPSSPPKCKFEPPLF- 85
Query: 115 MIIKRPHPHVTPSGLVSIPYLQ 136
HP V PSG V + L+
Sbjct: 86 ------HPQVYPSGTVCLSILE 101
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 77 GTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ 136
G P++ T+ + ++ E YP PP V + + HP+V +G + + LQ
Sbjct: 42 GPADTPYEDGTFRL--LLEFDEEYPNKPPHV------KFLSEMFHPNVYANGEICLDILQ 93
Query: 137 NWIYPSSNLVDLVRELSACFS 157
N P+ ++ ++ + + F+
Sbjct: 94 NRWTPTYDVASILTSIQSLFN 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,088,335
Number of Sequences: 62578
Number of extensions: 263937
Number of successful extensions: 656
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 642
Number of HSP's gapped (non-prelim): 26
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)