BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039489
(304 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LHG8|ELC_ARATH Protein ELC OS=Arabidopsis thaliana GN=ELC PE=1 SV=1
Length = 398
Score = 379 bits (974), Expect = e-104, Method: Compositional matrix adjust.
Identities = 208/319 (65%), Positives = 243/319 (76%), Gaps = 38/319 (11%)
Query: 1 MVPPAGTPPPNPQQIQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTA 60
MVPP P NPQQ+QQFLSS LSQRGPS++PY E KWLIRQHLL LIS++PSL+PKTA
Sbjct: 1 MVPP----PSNPQQVQQFLSSALSQRGPSSVPYEESNKWLIRQHLLNLISSYPSLEPKTA 56
Query: 61 TFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP 120
+F HNDGRSVNLLQADGT+PMPF GVTYNIPVIIWL+ESYPRHPPCVYVNPT DMIIKRP
Sbjct: 57 SFMHNDGRSVNLLQADGTIPMPFHGVTYNIPVIIWLLESYPRHPPCVYVNPTADMIIKRP 116
Query: 121 HPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYSQRRPSPSP-------N 173
H HVTPSGLVS+PYLQNW+YPSSNLVDLV +LSA F+R+PPLYS+RRP P P +
Sbjct: 117 HAHVTPSGLVSLPYLQNWVYPSSNLVDLVSDLSAAFARDPPLYSRRRPQPPPPSPPTVYD 176
Query: 174 SSPNPNPSHNQSNPAVMSNYGPSPSPQARPQPARPFPPSPYGG--------RPQPQPQTE 225
SS + PS +QS P RPFPPSPYGG Q Q++
Sbjct: 177 SSLSRPPSADQSLP-------------------RPFPPSPYGGGVSRVQVQHVHHQQQSD 217
Query: 226 DQTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDE 285
D EVFKRNA+NK+VEMVH+D+ MR+ARE E E L S QA L+RRE+E++ GLKE+ +E
Sbjct: 218 DAAEVFKRNAINKMVEMVHSDLVSMRRAREAEAEELLSLQAGLKRREDELNIGLKEMVEE 277
Query: 286 REGLEQQLQIVLMNSDILE 304
+E LEQQLQI+ MN+DIL+
Sbjct: 278 KETLEQQLQIISMNTDILD 296
>sp|Q9FFY6|ELCL_ARATH Protein ELC-like OS=Arabidopsis thaliana GN=ELCL PE=1 SV=1
Length = 368
Score = 367 bits (941), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/296 (64%), Positives = 224/296 (75%), Gaps = 35/296 (11%)
Query: 8 PPPNPQQIQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDG 67
PP Q+I QFLSS L+QRGPSALPYAE+TK LIRQHLL LIS++ SLDPKTATFTHNDG
Sbjct: 4 PPAKMQEIHQFLSSALTQRGPSALPYAENTKSLIRQHLLNLISSYTSLDPKTATFTHNDG 63
Query: 68 RSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPS 127
RSV LLQADGT+PMPFQGV+YNIPV+IWL+ESYP++PPCVYVNPTRDMIIKRPH +V+PS
Sbjct: 64 RSVILLQADGTIPMPFQGVSYNIPVVIWLLESYPQYPPCVYVNPTRDMIIKRPHSNVSPS 123
Query: 128 GLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYSQRRPSPSPNSSPNPNPSHNQSNP 187
GLVS+PYLQNWIYPSSNLVDL LSA FSR+PPLYSQRRP P +P
Sbjct: 124 GLVSLPYLQNWIYPSSNLVDLASHLSAAFSRDPPLYSQRRPPPQ-------------PSP 170
Query: 188 AVMSNYGPSPSPQARPQPARPFPPSPYGGRPQPQPQTEDQTEVFKRNAVNKLVEMVHADI 247
++ S Y +RP PP QT+D EV+K+NA+N++VEMVH DI
Sbjct: 171 SIGSGY------------SRPLPPR----------QTDDAAEVYKKNAINRIVEMVHGDI 208
Query: 248 TGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDIL 303
MR AREVE EGL S Q+ L+RREEEI+ G KE+ E+E LEQQLQ++ MN+D+L
Sbjct: 209 VLMRSAREVETEGLLSLQSDLKRREEEINNGFKEMVIEKETLEQQLQVIAMNTDVL 264
>sp|Q6IRE4|TS101_RAT Tumor susceptibility gene 101 protein OS=Rattus norvegicus
GN=Tsg101 PE=1 SV=1
Length = 391
Score = 115 bits (287), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 141/287 (49%), Gaps = 35/287 (12%)
Query: 40 LIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMES 99
L + + +I+ + L P ++ NDG S L+ GT+P+ ++G YNIP+ +WL+++
Sbjct: 20 LTVRQTVNVIAMYKDLKPVLDSYVFNDGSSRELVNLTGTIPVRYRGNIYNIPICLWLLDT 79
Query: 100 YPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSRE 159
YP +PP +V PT M IK HV +G + +PYL +W +P S L++L++ + F E
Sbjct: 80 YPYNPPICFVKPTSSMTIK-TGKHVDANGKIYLPYLHDWKHPRSELLELIQIMIVIFGEE 138
Query: 160 PPLYSQRRPSPSPNSSPN-----PNPSHNQSNPAVMSNY--GPSPSPQARPQPARPF--- 209
PP++S RP+ S + P PN S+ S P+ +S Y G P+P P P
Sbjct: 139 PPVFS--RPTVSASYPPYTAAGPPNTSYLPSMPSGISAYPSGYPPNPSGYPGCPYPPAGP 196
Query: 210 ------------PPSPYGGRPQPQPQTEDQTEVFKRNAVNKLVEMVHADITGMRKAREVE 257
PP G + +ED ++ A +R + E
Sbjct: 197 YPATTSSQYPSQPPVTTAGPSRDGTISEDTIR----------ASLISAVSDKLRWRMKEE 246
Query: 258 VEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDILE 304
++G + L+R EE++ +G ++L++ L+Q++ V N ++L+
Sbjct: 247 MDGAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 293
>sp|Q61187|TS101_MOUSE Tumor susceptibility gene 101 protein OS=Mus musculus GN=Tsg101
PE=1 SV=2
Length = 391
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 140/279 (50%), Gaps = 19/279 (6%)
Query: 40 LIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMES 99
L + + +I+ + L P ++ NDG S L+ GT+P+ ++G YNIP+ +WL+++
Sbjct: 20 LTVRQTVNVIAMYKDLKPVLDSYVFNDGSSRELVNLTGTIPVRYRGNIYNIPICLWLLDT 79
Query: 100 YPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSRE 159
YP +PP +V PT M IK HV +G + +PYL +W +P S L++L++ + F E
Sbjct: 80 YPYNPPICFVKPTSSMTIK-TGKHVDANGKIYLPYLHDWKHPRSELLELIQIMIVIFGEE 138
Query: 160 PPLYSQRRPSPSPNSSPN-----PNPSHNQSNPAVMSNY--GPSPSPQARP-------QP 205
PP++S RP+ S + P PN S+ P+ +S Y G P+P P P
Sbjct: 139 PPVFS--RPTVSASYPPYTATGPPNTSYMPGMPSGISAYPSGYPPNPSGYPGCPYPPAGP 196
Query: 206 ARPFPPSPYGGRPQPQPQTEDQTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ 265
S Y +P + + + ++ A +R + E++G +
Sbjct: 197 YPATTSSQYPSQPPVTTVGPSRDGTISEDTIR--ASLISAVSDKLRWRMKEEMDGAQAEL 254
Query: 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDILE 304
L+R EE++ +G ++L++ L+Q++ V N ++L+
Sbjct: 255 NALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 293
>sp|Q99816|TS101_HUMAN Tumor susceptibility gene 101 protein OS=Homo sapiens GN=TSG101
PE=1 SV=2
Length = 390
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 138/276 (50%), Gaps = 14/276 (5%)
Query: 40 LIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMES 99
L + + +I+ + L P ++ NDG S L+ GT+P+P++G TYNIP+ +WL+++
Sbjct: 20 LTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDT 79
Query: 100 YPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSRE 159
YP +PP +V PT M IK HV +G + +PYL W +P S+L+ L++ + F E
Sbjct: 80 YPYNPPICFVKPTSSMTIKTGK-HVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDE 138
Query: 160 PPLYSQRRPSPSP--NSSPNPNPSHNQSNPAVM----SNYGPSPS-----PQARPQPARP 208
PP++S+ + P ++ PN S+ P + S Y P+PS P P
Sbjct: 139 PPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPYPPGGPYPA 198
Query: 209 FPPSPYGGRPQPQPQTEDQTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALL 268
S Y +P + + + ++ A +R + E++ + L
Sbjct: 199 TTSSQYPSQPPVTTVGPSRDGTISEDTIR--ASLISAVSDKLRWRMKEEMDRAQAELNAL 256
Query: 269 RRREEEIDRGLKELQDEREGLEQQLQIVLMNSDILE 304
+R EE++ +G ++L++ L+Q++ V N ++L+
Sbjct: 257 KRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 292
>sp|Q66KB7|UEVLD_XENTR Ubiquitin-conjugating enzyme E2 variant 3 OS=Xenopus tropicalis
GN=uevld PE=2 SV=1
Length = 476
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 74/125 (59%), Gaps = 1/125 (0%)
Query: 40 LIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMES 99
L + L L TFPS T+T DG +LL GTVPM QG TYNIP+ +W+++S
Sbjct: 20 LTIEELKDLNRTFPSFIFSMETYTFRDGSQKDLLNLTGTVPMKHQGTTYNIPICLWILDS 79
Query: 100 YPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSRE 159
+P PP ++ P+ +M I R H+ G + +PYLQNW +P S + L+RE++ F E
Sbjct: 80 HPFAPPLCFLKPSGNMGI-RVGRHIDAQGRIYLPYLQNWSHPKSTVTGLIREMAVKFEEE 138
Query: 160 PPLYS 164
PLYS
Sbjct: 139 LPLYS 143
>sp|Q3U1V6|UEVLD_MOUSE Ubiquitin-conjugating enzyme E2 variant 3 OS=Mus musculus GN=Uevld
PE=2 SV=1
Length = 471
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 51 TFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVN 110
+FP T+ D +LL GT+P+ +QG TYNIP+ W+++S+P PP ++
Sbjct: 31 SFPHFRYSVDTYVFKDTSQKDLLNFTGTIPVMYQGKTYNIPIRFWILDSHPFAPPICFLK 90
Query: 111 PTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYS 164
PT +M I HV G + +PYLQNW +P S +V L++E+ A F E PLYS
Sbjct: 91 PTANMEISVG-KHVDAKGRIYLPYLQNWSHPKSAIVGLIKEMIAKFQEELPLYS 143
>sp|Q8IX04|UEVLD_HUMAN Ubiquitin-conjugating enzyme E2 variant 3 OS=Homo sapiens GN=UEVLD
PE=1 SV=2
Length = 471
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Query: 52 FPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNP 111
FP T+ D +LL GT+P+ +QG TYNIP+ W+++S+P PP ++ P
Sbjct: 32 FPHFKYSMDTYVFKDSSQKDLLNFTGTIPVMYQGNTYNIPIRFWILDSHPFAPPICFLKP 91
Query: 112 TRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYS 164
T +M I HV G + +PYLQNW +P S +V L++E+ A F E P+YS
Sbjct: 92 TANMGI-LVGKHVDAQGRIYLPYLQNWSHPKSVIVGLIKEMIAKFQEELPMYS 143
>sp|Q6DBY5|UEVLD_DANRE Ubiquitin-conjugating enzyme E2 variant 3 OS=Danio rerio GN=uevld
PE=2 SV=1
Length = 471
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 51 TFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVN 110
+P + T+T +D +LL+ G +P+ +QG +YNIP+++WL++S+P PP Y+
Sbjct: 31 VYPDMKIMAGTYTSSDSLQKDLLKLVGNIPVVYQGRSYNIPILLWLLDSFPFTPPICYLR 90
Query: 111 PTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYSQ 165
PT M+I R HV G + +P L NW +P S++ L+ E+ F EPPL ++
Sbjct: 91 PTSSMVI-REGKHVDSKGRIHLPALHNWDHPKSSVNALLAEMIGKFEEEPPLGTK 144
>sp|Q54LJ3|TS101_DICDI ESCRT-I complex subunit tsg101 OS=Dictyostelium discoideum
GN=tsg101 PE=3 SV=1
Length = 478
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 72/139 (51%), Gaps = 15/139 (10%)
Query: 1 MVPPAGTPPPNPQQ-IQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKT 59
MV P N + FL+ + + R P L ++D K HL FP+L P
Sbjct: 16 MVNPTLAIVDNKMHTLSTFLNYIRAYRDP--LRISKDLKETF--HL------FPNLSP-- 63
Query: 60 ATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKR 119
F N VNL+ GT+P+ F+G+ Y +P+I+W+ +YP+ P + ++PT +M I +
Sbjct: 64 --FYENIPNRVNLICIKGTIPICFKGINYYLPIIVWVPLNYPQEFPTMVLDPTPEMRIVK 121
Query: 120 PHPHVTPSGLVSIPYLQNW 138
H HV GLV PY+ +W
Sbjct: 122 NHHHVNLQGLVYHPYISSW 140
>sp|P25604|STP22_YEAST Suppressor protein STP22 of temperature-sensitive alpha-factor
receptor and arginine permease OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=STP22 PE=1
SV=3
Length = 385
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 11/137 (8%)
Query: 46 LTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVT-YNIPVIIWLMESYPRHP 104
L L+ F SL P+T FTH+DG LL GT+ G + ++IPVI+W+ YP P
Sbjct: 36 LALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKP 95
Query: 105 PCVYVN-PTRDM-IIKRPHP---HVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSRE 159
P + +N DM I P ++ +G +++P L W + NL+ +V+EL + E
Sbjct: 96 PFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHCWDPAAMNLIMVVQELMSLL-HE 154
Query: 160 PPLYSQRRPS--PSPNS 174
PP + PS P PN+
Sbjct: 155 PP--QDQAPSLPPKPNT 169
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,393,705
Number of Sequences: 539616
Number of extensions: 6391535
Number of successful extensions: 47377
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 1198
Number of HSP's that attempted gapping in prelim test: 33194
Number of HSP's gapped (non-prelim): 9343
length of query: 304
length of database: 191,569,459
effective HSP length: 117
effective length of query: 187
effective length of database: 128,434,387
effective search space: 24017230369
effective search space used: 24017230369
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)