Query 039489
Match_columns 304
No_of_seqs 194 out of 290
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 10:09:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039489.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039489hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2391 Vacuolar sorting prote 100.0 1.6E-60 3.4E-65 447.1 25.5 263 15-298 3-274 (365)
2 PF05743 UEV: UEV domain; Int 100.0 3.8E-45 8.3E-50 304.5 10.3 121 41-162 1-121 (121)
3 KOG2391 Vacuolar sorting prote 99.2 2.5E-10 5.3E-15 108.8 12.4 190 100-303 66-272 (365)
4 smart00212 UBCc Ubiquitin-conj 99.2 3.3E-10 7.2E-15 96.4 11.6 105 42-158 4-111 (145)
5 cd00195 UBCc Ubiquitin-conjuga 99.0 5.1E-09 1.1E-13 88.7 11.1 105 41-157 4-110 (141)
6 PLN00172 ubiquitin conjugating 98.9 2.3E-08 5E-13 86.0 11.4 106 41-158 6-112 (147)
7 PTZ00390 ubiquitin-conjugating 98.9 2.2E-08 4.9E-13 86.6 11.3 106 41-158 7-113 (152)
8 COG5078 Ubiquitin-protein liga 98.8 3.6E-08 7.9E-13 85.5 9.9 106 41-158 10-117 (153)
9 KOG0421 Ubiquitin-protein liga 98.7 1.6E-08 3.6E-13 85.9 5.3 100 42-158 35-140 (175)
10 KOG0417 Ubiquitin-protein liga 98.7 3.8E-08 8.2E-13 84.3 6.6 78 72-158 34-112 (148)
11 PF00179 UQ_con: Ubiquitin-con 98.7 1.1E-07 2.4E-12 80.3 9.2 102 42-156 3-108 (140)
12 KOG0419 Ubiquitin-protein liga 98.5 2.2E-07 4.7E-12 78.1 6.2 77 73-158 38-115 (152)
13 KOG0422 Ubiquitin-protein liga 98.4 9.2E-07 2E-11 75.0 8.0 79 70-157 30-113 (153)
14 KOG0424 Ubiquitin-protein liga 98.2 7.1E-06 1.5E-10 70.1 7.5 86 62-157 29-121 (158)
15 KOG0420 Ubiquitin-protein liga 98.0 7.1E-06 1.5E-10 71.9 4.3 96 54-158 41-140 (184)
16 KOG0416 Ubiquitin-protein liga 98.0 1.5E-05 3.3E-10 69.7 6.0 97 41-153 8-107 (189)
17 KOG0418 Ubiquitin-protein liga 97.8 8E-05 1.7E-09 66.2 7.1 86 65-159 32-119 (200)
18 KOG0427 Ubiquitin conjugating 97.5 0.0011 2.3E-08 56.1 10.2 103 43-158 22-126 (161)
19 KOG0425 Ubiquitin-protein liga 97.4 0.00044 9.6E-09 60.0 6.7 75 73-156 40-128 (171)
20 KOG0895 Ubiquitin-conjugating 97.1 0.0064 1.4E-07 66.0 13.2 86 74-165 886-978 (1101)
21 KOG0426 Ubiquitin-protein liga 96.7 0.0037 8E-08 53.0 5.5 55 75-137 41-95 (165)
22 PF14461 Prok-E2_B: Prokaryoti 96.5 0.0083 1.8E-07 50.6 6.6 67 87-157 35-105 (133)
23 KOG0423 Ubiquitin-protein liga 96.0 0.0056 1.2E-07 54.0 2.9 60 73-140 44-104 (223)
24 PRK10884 SH3 domain-containing 95.6 0.081 1.8E-06 48.2 8.9 63 236-298 98-167 (206)
25 PF06005 DUF904: Protein of un 95.3 0.28 6.1E-06 37.5 9.8 63 238-300 4-69 (72)
26 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.5 0.55 1.2E-05 39.5 10.5 64 235-298 63-126 (132)
27 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.6 1.4 3E-05 37.1 11.2 68 236-303 57-124 (132)
28 PF09304 Cortex-I_coil: Cortex 93.4 0.57 1.2E-05 38.5 8.2 41 253-293 20-60 (107)
29 KOG4571 Activating transcripti 93.0 0.85 1.8E-05 43.6 9.8 69 227-300 224-292 (294)
30 KOG0896 Ubiquitin-conjugating 92.6 0.53 1.2E-05 40.1 7.1 101 45-154 10-119 (138)
31 KOG4005 Transcription factor X 92.4 1.2 2.6E-05 41.6 9.8 45 250-294 105-149 (292)
32 PF07798 DUF1640: Protein of u 92.3 1.3 2.8E-05 39.1 9.7 55 234-288 76-131 (177)
33 PF07106 TBPIP: Tat binding pr 92.2 1.4 3E-05 38.4 9.6 64 236-301 77-140 (169)
34 KOG0804 Cytoplasmic Zn-finger 92.1 1.4 3.1E-05 44.4 10.5 62 238-299 389-450 (493)
35 PF08826 DMPK_coil: DMPK coile 91.6 1.6 3.5E-05 32.4 7.9 45 252-296 4-51 (61)
36 KOG0894 Ubiquitin-protein liga 91.5 0.9 1.9E-05 41.8 7.7 79 66-154 32-117 (244)
37 PRK10884 SH3 domain-containing 91.5 1.6 3.5E-05 39.8 9.5 66 238-303 93-158 (206)
38 PF09798 LCD1: DNA damage chec 91.2 0.82 1.8E-05 48.4 8.2 55 242-296 1-59 (654)
39 KOG1760 Molecular chaperone Pr 91.1 3.3 7.2E-05 35.0 10.1 65 234-298 26-116 (131)
40 COG4026 Uncharacterized protei 91.1 1.6 3.5E-05 40.5 9.0 14 85-98 32-45 (290)
41 KOG0895 Ubiquitin-conjugating 90.7 0.83 1.8E-05 50.3 7.8 89 74-167 317-413 (1101)
42 PF07889 DUF1664: Protein of u 90.6 2.4 5.3E-05 35.8 9.1 50 253-302 72-121 (126)
43 KOG4657 Uncharacterized conser 90.1 3.6 7.9E-05 38.1 10.4 67 232-299 39-115 (246)
44 PF11932 DUF3450: Protein of u 89.6 5.6 0.00012 36.8 11.6 50 248-297 48-97 (251)
45 PRK15422 septal ring assembly 89.1 6.7 0.00015 30.6 9.7 36 266-301 42-77 (79)
46 PF06785 UPF0242: Uncharacteri 89.0 2.8 6E-05 41.0 9.2 61 236-296 90-153 (401)
47 COG4026 Uncharacterized protei 88.7 6.5 0.00014 36.6 10.9 13 227-239 104-116 (290)
48 PF00038 Filament: Intermediat 88.5 5.3 0.00011 37.7 10.8 57 238-294 223-279 (312)
49 KOG0429 Ubiquitin-conjugating 88.4 0.83 1.8E-05 42.1 4.9 88 60-158 38-133 (258)
50 PRK12704 phosphodiesterase; Pr 88.3 3.9 8.5E-05 42.2 10.5 33 261-293 84-116 (520)
51 COG1579 Zn-ribbon protein, pos 88.1 6.2 0.00013 36.9 10.7 58 243-300 115-172 (239)
52 PF07798 DUF1640: Protein of u 88.0 5.6 0.00012 35.1 9.9 19 281-299 117-135 (177)
53 PF12072 DUF3552: Domain of un 87.9 6.4 0.00014 35.4 10.4 33 263-295 82-114 (201)
54 PF04880 NUDE_C: NUDE protein, 87.8 0.86 1.9E-05 40.3 4.6 44 249-293 4-47 (166)
55 PF08317 Spc7: Spc7 kinetochor 87.8 4.8 0.0001 38.9 10.2 32 266-297 233-264 (325)
56 PF14712 Snapin_Pallidin: Snap 87.8 7.2 0.00016 30.3 9.5 70 233-302 9-89 (92)
57 PRK00106 hypothetical protein; 87.6 4.7 0.0001 41.9 10.5 26 266-291 104-129 (535)
58 PF09177 Syntaxin-6_N: Syntaxi 87.2 7.2 0.00016 30.9 9.2 57 243-299 6-68 (97)
59 PRK13729 conjugal transfer pil 87.1 2.6 5.6E-05 43.0 8.1 48 252-299 79-126 (475)
60 TIGR01069 mutS2 MutS2 family p 87.1 3.7 8E-05 44.4 9.7 40 246-285 519-558 (771)
61 KOG1029 Endocytic adaptor prot 87.0 3.8 8.2E-05 44.2 9.4 48 247-294 362-410 (1118)
62 COG3074 Uncharacterized protei 86.9 11 0.00023 28.9 9.3 36 266-301 42-77 (79)
63 PRK10132 hypothetical protein; 86.9 5 0.00011 33.0 8.3 61 236-296 10-71 (108)
64 PF02403 Seryl_tRNA_N: Seryl-t 86.8 5 0.00011 32.1 8.3 33 266-298 70-102 (108)
65 PRK00409 recombination and DNA 86.7 3.7 8E-05 44.4 9.5 8 90-97 317-324 (782)
66 PF10473 CENP-F_leu_zip: Leuci 86.5 4.6 9.9E-05 34.8 8.2 54 243-296 50-106 (140)
67 PF09755 DUF2046: Uncharacteri 86.4 8.3 0.00018 37.4 10.7 24 227-250 73-96 (310)
68 PF10211 Ax_dynein_light: Axon 86.3 6.8 0.00015 35.1 9.6 30 272-301 122-151 (189)
69 KOG0428 Non-canonical ubiquiti 86.3 2.7 5.8E-05 39.5 7.1 74 70-154 41-118 (314)
70 TIGR03752 conj_TIGR03752 integ 86.1 6.1 0.00013 40.3 10.1 32 266-297 105-136 (472)
71 PF12329 TMF_DNA_bd: TATA elem 85.9 11 0.00024 28.8 9.2 33 266-298 36-68 (74)
72 KOG4571 Activating transcripti 85.8 13 0.00029 35.6 11.7 48 243-290 242-289 (294)
73 PF00038 Filament: Intermediat 85.6 6.7 0.00015 37.0 9.7 30 236-265 167-196 (312)
74 PRK12705 hypothetical protein; 85.4 7.3 0.00016 40.2 10.4 33 264-296 82-114 (508)
75 KOG1962 B-cell receptor-associ 85.3 7.5 0.00016 35.8 9.5 13 226-238 84-96 (216)
76 PF10168 Nup88: Nuclear pore c 85.3 7.2 0.00016 41.9 10.8 72 227-298 544-621 (717)
77 PRK11637 AmiB activator; Provi 85.3 11 0.00024 37.5 11.6 29 268-296 224-252 (428)
78 PF07111 HCR: Alpha helical co 85.1 5.8 0.00013 42.2 9.6 64 240-303 135-202 (739)
79 COG2433 Uncharacterized conser 84.9 7.1 0.00015 41.0 10.1 42 105-152 245-287 (652)
80 KOG4196 bZIP transcription fac 84.7 8.7 0.00019 32.7 8.8 57 245-301 54-112 (135)
81 PF12329 TMF_DNA_bd: TATA elem 84.6 5 0.00011 30.7 6.8 13 277-289 54-66 (74)
82 TIGR03319 YmdA_YtgF conserved 84.5 8.2 0.00018 39.9 10.4 25 266-290 83-107 (514)
83 COG4942 Membrane-bound metallo 84.5 4.6 9.9E-05 40.7 8.3 23 274-296 77-99 (420)
84 TIGR03495 phage_LysB phage lys 84.4 17 0.00036 31.2 10.5 70 232-301 20-92 (135)
85 PF13747 DUF4164: Domain of un 84.2 19 0.00041 28.5 10.8 71 228-298 9-81 (89)
86 COG4575 ElaB Uncharacterized c 84.0 5.7 0.00012 32.5 7.2 50 241-290 11-61 (104)
87 PRK00888 ftsB cell division pr 84.0 1.7 3.6E-05 35.5 4.1 36 256-291 34-69 (105)
88 PF07106 TBPIP: Tat binding pr 83.8 10 0.00022 32.9 9.4 38 254-291 98-137 (169)
89 PF03961 DUF342: Protein of un 83.8 7.2 0.00016 39.2 9.5 63 234-296 337-408 (451)
90 PF06657 Cep57_MT_bd: Centroso 83.6 10 0.00023 29.3 8.3 64 234-297 13-77 (79)
91 PF05529 Bap31: B-cell recepto 83.6 6.9 0.00015 34.7 8.4 32 270-301 154-185 (192)
92 PF11180 DUF2968: Protein of u 83.6 16 0.00034 33.2 10.5 72 227-298 101-175 (192)
93 COG1579 Zn-ribbon protein, pos 83.6 15 0.00031 34.5 10.7 33 234-266 92-124 (239)
94 PF01920 Prefoldin_2: Prefoldi 83.5 19 0.00042 28.1 10.8 36 264-299 63-98 (106)
95 PRK11637 AmiB activator; Provi 83.5 8 0.00017 38.6 9.6 29 249-277 184-212 (428)
96 PF09744 Jnk-SapK_ap_N: JNK_SA 83.4 16 0.00035 32.0 10.3 39 260-298 79-117 (158)
97 COG3937 Uncharacterized conser 83.4 8.5 0.00018 31.7 8.0 69 231-299 25-105 (108)
98 COG3416 Uncharacterized protei 83.4 4.2 9E-05 37.3 6.8 66 233-298 6-76 (233)
99 PF07889 DUF1664: Protein of u 83.3 17 0.00037 30.8 10.1 24 242-265 65-88 (126)
100 PF09849 DUF2076: Uncharacteri 83.1 3.6 7.8E-05 38.6 6.6 64 232-295 5-73 (247)
101 PF03962 Mnd1: Mnd1 family; I 83.0 12 0.00026 33.5 9.7 14 280-293 113-126 (188)
102 PF06595 BDV_P24: Borna diseas 82.9 9.4 0.0002 33.8 8.5 78 226-303 69-162 (201)
103 PF10234 Cluap1: Clusterin-ass 82.7 14 0.0003 35.1 10.4 63 234-296 165-237 (267)
104 PF10498 IFT57: Intra-flagella 82.5 13 0.00029 36.6 10.6 67 230-296 244-313 (359)
105 PF11559 ADIP: Afadin- and alp 82.5 21 0.00046 30.3 10.7 34 232-265 53-86 (151)
106 KOG2685 Cystoskeletal protein 82.4 16 0.00035 36.7 11.0 72 226-297 44-118 (421)
107 PF05529 Bap31: B-cell recepto 82.4 12 0.00025 33.2 9.3 35 266-300 157-191 (192)
108 PF04799 Fzo_mitofusin: fzo-li 82.2 13 0.00028 33.1 9.3 29 234-262 105-133 (171)
109 TIGR00414 serS seryl-tRNA synt 82.1 9.7 0.00021 38.2 9.6 32 266-297 72-103 (418)
110 PF04799 Fzo_mitofusin: fzo-li 82.0 10 0.00023 33.7 8.6 43 233-275 111-153 (171)
111 PF07888 CALCOCO1: Calcium bin 81.9 8.4 0.00018 40.1 9.2 60 239-298 372-445 (546)
112 PF10473 CENP-F_leu_zip: Leuci 81.9 20 0.00043 30.9 10.2 48 253-300 49-96 (140)
113 PHA01750 hypothetical protein 81.8 8.4 0.00018 29.1 6.7 26 231-256 28-53 (75)
114 PF07888 CALCOCO1: Calcium bin 81.7 13 0.00028 38.7 10.5 7 281-287 210-216 (546)
115 PF08317 Spc7: Spc7 kinetochor 81.4 13 0.00027 36.0 9.8 43 121-164 57-107 (325)
116 KOG4603 TBP-1 interacting prot 81.2 18 0.00039 32.4 9.8 68 226-299 78-145 (201)
117 KOG0804 Cytoplasmic Zn-finger 81.1 17 0.00036 37.1 10.6 22 130-151 201-222 (493)
118 COG1422 Predicted membrane pro 81.1 17 0.00036 33.2 9.8 24 275-298 96-119 (201)
119 KOG1924 RhoA GTPase effector D 81.1 4.3 9.3E-05 43.9 6.8 10 144-153 455-464 (1102)
120 PF11172 DUF2959: Protein of u 80.8 13 0.00027 34.0 8.9 72 232-303 22-97 (201)
121 PF15035 Rootletin: Ciliary ro 80.6 21 0.00045 32.0 10.2 50 227-276 70-119 (182)
122 PF07795 DUF1635: Protein of u 80.4 9.3 0.0002 35.1 8.0 37 262-298 22-61 (214)
123 KOG3684 Ca2+-activated K+ chan 80.3 5.6 0.00012 40.4 7.1 31 266-296 437-467 (489)
124 KOG3088 Secretory carrier memb 80.2 1.9 4.2E-05 41.2 3.7 31 261-291 62-92 (313)
125 PF04111 APG6: Autophagy prote 80.2 29 0.00064 33.5 11.9 64 234-297 53-126 (314)
126 PRK05431 seryl-tRNA synthetase 80.2 12 0.00026 37.6 9.6 33 266-298 69-101 (425)
127 PF12999 PRKCSH-like: Glucosid 80.1 12 0.00027 33.4 8.5 17 272-288 155-171 (176)
128 COG5019 CDC3 Septin family pro 80.1 13 0.00028 36.9 9.4 47 253-299 325-371 (373)
129 KOG2129 Uncharacterized conser 80.0 22 0.00047 36.0 10.9 68 231-298 253-327 (552)
130 PF09726 Macoilin: Transmembra 80.0 14 0.00031 39.6 10.4 31 235-265 464-494 (697)
131 PLN02678 seryl-tRNA synthetase 80.0 12 0.00027 38.0 9.6 33 266-298 74-106 (448)
132 COG3074 Uncharacterized protei 79.9 17 0.00037 27.9 7.9 54 238-291 4-60 (79)
133 PF09403 FadA: Adhesion protei 79.8 19 0.00041 30.5 9.2 20 277-296 93-112 (126)
134 PF13094 CENP-Q: CENP-Q, a CEN 79.7 18 0.00038 31.2 9.3 32 242-273 24-55 (160)
135 KOG1029 Endocytic adaptor prot 79.7 12 0.00025 40.7 9.4 74 230-303 478-568 (1118)
136 PF09304 Cortex-I_coil: Cortex 79.7 32 0.0007 28.3 10.1 41 255-295 36-76 (107)
137 PF03938 OmpH: Outer membrane 79.6 18 0.00039 30.5 9.3 61 234-294 39-104 (158)
138 PF10224 DUF2205: Predicted co 79.6 25 0.00055 27.4 9.1 47 257-303 24-70 (80)
139 PF10168 Nup88: Nuclear pore c 79.5 18 0.00039 39.0 11.0 36 266-301 582-617 (717)
140 PLN02320 seryl-tRNA synthetase 79.3 11 0.00023 39.0 8.9 32 266-297 133-164 (502)
141 PF06005 DUF904: Protein of un 79.2 16 0.00036 27.8 7.8 45 242-286 22-69 (72)
142 COG2960 Uncharacterized protei 79.0 18 0.00039 29.5 8.3 26 274-299 63-88 (103)
143 PHA02562 46 endonuclease subun 78.9 17 0.00037 37.0 10.4 23 143-165 110-132 (562)
144 PF03962 Mnd1: Mnd1 family; I 78.6 26 0.00056 31.4 10.2 46 257-302 108-160 (188)
145 PF12709 Kinetocho_Slk19: Cent 78.5 29 0.00064 27.6 9.3 11 241-251 18-28 (87)
146 PF05278 PEARLI-4: Arabidopsis 78.5 27 0.00058 33.3 10.7 17 148-164 98-114 (269)
147 PF04576 Zein-binding: Zein-bi 78.4 9.1 0.0002 30.8 6.5 41 250-290 4-51 (94)
148 KOG4657 Uncharacterized conser 78.4 27 0.00058 32.5 10.3 38 259-296 86-123 (246)
149 PF04380 BMFP: Membrane fusoge 78.4 29 0.00062 26.8 9.1 30 269-298 49-78 (79)
150 PF07246 Phlebovirus_NSM: Phle 78.3 16 0.00034 34.7 9.0 42 259-300 198-239 (264)
151 smart00502 BBC B-Box C-termina 78.3 29 0.00063 27.4 9.7 22 273-294 75-96 (127)
152 KOG0971 Microtubule-associated 78.3 11 0.00024 41.4 8.8 60 242-301 379-441 (1243)
153 TIGR01069 mutS2 MutS2 family p 78.2 15 0.00033 39.8 10.1 8 90-97 312-319 (771)
154 PF10146 zf-C4H2: Zinc finger- 77.8 40 0.00087 31.3 11.5 32 266-297 70-101 (230)
155 TIGR03752 conj_TIGR03752 integ 77.8 9.6 0.00021 38.9 7.9 32 265-296 111-142 (472)
156 KOG0161 Myosin class II heavy 77.5 15 0.00032 43.7 10.2 39 227-265 1311-1349(1930)
157 PF05816 TelA: Toxic anion res 77.5 14 0.0003 35.9 8.8 65 232-296 71-135 (333)
158 PF04977 DivIC: Septum formati 77.5 3.6 7.7E-05 30.7 3.8 25 258-282 26-50 (80)
159 KOG2751 Beclin-like protein [S 77.1 14 0.00031 37.2 8.8 34 266-299 186-219 (447)
160 PF04899 MbeD_MobD: MbeD/MobD 76.8 31 0.00066 26.3 10.1 63 231-297 7-69 (70)
161 PF14662 CCDC155: Coiled-coil 76.8 25 0.00055 31.8 9.5 33 266-298 91-123 (193)
162 PF09602 PhaP_Bmeg: Polyhydrox 76.6 30 0.00065 30.6 9.7 60 235-297 45-105 (165)
163 KOG0972 Huntingtin interacting 76.6 13 0.00028 36.0 8.0 31 266-296 301-331 (384)
164 PF10805 DUF2730: Protein of u 76.6 13 0.00029 30.1 7.2 23 274-296 69-91 (106)
165 PHA02562 46 endonuclease subun 76.5 21 0.00046 36.3 10.3 8 16-23 44-51 (562)
166 PF06120 Phage_HK97_TLTM: Tail 76.3 14 0.0003 35.7 8.3 59 239-297 42-101 (301)
167 PRK10404 hypothetical protein; 76.2 23 0.00049 28.8 8.3 52 241-292 8-60 (101)
168 smart00787 Spc7 Spc7 kinetocho 76.1 24 0.00052 34.2 9.9 43 121-164 52-102 (312)
169 PF10267 Tmemb_cc2: Predicted 76.0 31 0.00066 34.6 10.9 31 236-266 235-265 (395)
170 PF09726 Macoilin: Transmembra 75.9 17 0.00037 39.0 9.6 56 242-297 457-515 (697)
171 PF05064 Nsp1_C: Nsp1-like C-t 75.9 4.3 9.2E-05 33.6 4.1 50 253-302 54-103 (116)
172 PF10779 XhlA: Haemolysin XhlA 75.9 23 0.00049 26.6 7.8 27 266-292 23-49 (71)
173 PF04420 CHD5: CHD5-like prote 75.8 10 0.00022 33.0 6.7 30 266-295 69-98 (161)
174 PF11544 Spc42p: Spindle pole 75.6 35 0.00077 26.4 9.1 48 245-292 8-55 (76)
175 PF05791 Bacillus_HBL: Bacillu 75.5 29 0.00062 30.8 9.6 62 239-300 111-179 (184)
176 PF14197 Cep57_CLD_2: Centroso 75.4 33 0.00071 25.9 9.9 19 278-296 48-66 (69)
177 KOG3091 Nuclear pore complex, 75.4 12 0.00026 38.4 7.9 44 121-164 185-230 (508)
178 KOG0994 Extracellular matrix g 75.3 16 0.00035 41.3 9.2 60 240-299 1691-1750(1758)
179 COG1842 PspA Phage shock prote 75.2 30 0.00064 32.0 9.9 57 241-297 84-140 (225)
180 PF04111 APG6: Autophagy prote 75.2 42 0.00091 32.4 11.4 47 241-291 46-92 (314)
181 PF14362 DUF4407: Domain of un 75.0 28 0.00061 32.9 10.0 34 227-260 138-171 (301)
182 PF05384 DegS: Sensor protein 74.8 50 0.0011 29.0 10.7 55 244-298 76-133 (159)
183 TIGR02132 phaR_Bmeg polyhydrox 74.7 25 0.00054 31.6 8.8 33 251-283 106-138 (189)
184 smart00787 Spc7 Spc7 kinetocho 74.7 27 0.00058 33.8 9.9 29 268-296 230-258 (312)
185 PF10224 DUF2205: Predicted co 74.7 9.7 0.00021 29.8 5.6 43 240-282 18-63 (80)
186 PF08581 Tup_N: Tup N-terminal 74.6 38 0.00082 26.3 10.7 18 235-252 1-18 (79)
187 PF15175 SPATA24: Spermatogene 74.5 23 0.00051 30.8 8.3 55 245-299 3-64 (153)
188 PF10146 zf-C4H2: Zinc finger- 74.5 31 0.00067 32.0 9.8 52 246-297 33-87 (230)
189 KOG4673 Transcription factor T 74.4 25 0.00055 37.7 10.0 66 232-297 552-632 (961)
190 PF13874 Nup54: Nucleoporin co 74.4 12 0.00026 31.8 6.7 13 284-296 107-119 (141)
191 KOG0161 Myosin class II heavy 74.3 24 0.00052 42.0 10.9 67 232-299 1475-1541(1930)
192 KOG0897 Predicted ubiquitin-co 74.1 4.8 0.0001 33.6 3.9 62 87-154 10-73 (122)
193 PF10046 BLOC1_2: Biogenesis o 74.1 31 0.00068 27.5 8.6 21 278-298 74-94 (99)
194 PF11932 DUF3450: Protein of u 74.0 21 0.00047 32.9 8.8 60 235-294 39-101 (251)
195 PF12325 TMF_TATA_bd: TATA ele 74.0 36 0.00077 28.5 9.2 13 243-255 35-47 (120)
196 PF12269 zf-CpG_bind_C: CpG bi 73.9 9.1 0.0002 35.7 6.2 60 238-298 4-64 (236)
197 PF03310 Cauli_DNA-bind: Cauli 73.9 32 0.0007 29.0 8.8 54 235-289 4-57 (121)
198 PF03148 Tektin: Tektin family 73.9 31 0.00066 34.2 10.3 46 253-298 47-92 (384)
199 TIGR01834 PHA_synth_III_E poly 73.9 19 0.00041 35.1 8.5 72 227-298 241-317 (320)
200 KOG4673 Transcription factor T 73.9 22 0.00048 38.1 9.5 67 233-299 706-772 (961)
201 PF15556 Zwint: ZW10 interacto 73.8 66 0.0014 29.7 11.4 66 228-293 95-171 (252)
202 COG2919 Septum formation initi 73.8 42 0.0009 27.7 9.5 31 260-290 61-91 (117)
203 TIGR03017 EpsF chain length de 73.6 25 0.00054 34.8 9.7 41 233-273 288-328 (444)
204 PF08657 DASH_Spc34: DASH comp 73.5 19 0.00042 34.0 8.4 53 225-278 156-213 (259)
205 KOG2629 Peroxisomal membrane a 73.4 33 0.00072 33.0 9.8 57 235-291 126-189 (300)
206 PLN02372 violaxanthin de-epoxi 73.3 31 0.00068 34.8 10.0 14 127-140 275-288 (455)
207 PF09744 Jnk-SapK_ap_N: JNK_SA 73.3 46 0.00099 29.2 10.1 58 240-297 52-109 (158)
208 PRK09039 hypothetical protein; 73.2 44 0.00096 32.6 11.1 22 244-265 136-157 (343)
209 PRK00409 recombination and DNA 73.2 23 0.0005 38.5 9.9 7 17-23 133-139 (782)
210 KOG3647 Predicted coiled-coil 73.1 26 0.00057 33.5 9.0 11 266-276 140-150 (338)
211 COG3883 Uncharacterized protei 73.0 37 0.00081 32.3 10.1 28 266-293 69-96 (265)
212 PF15079 DUF4546: Domain of un 73.0 23 0.0005 31.6 8.1 55 242-296 51-105 (205)
213 KOG0971 Microtubule-associated 72.9 18 0.00039 39.9 8.7 30 236-265 401-430 (1243)
214 KOG1853 LIS1-interacting prote 72.9 31 0.00067 32.8 9.3 33 272-304 93-125 (333)
215 TIGR01005 eps_transp_fam exopo 72.8 17 0.00036 38.9 8.7 40 236-275 325-364 (754)
216 PF14662 CCDC155: Coiled-coil 72.8 35 0.00076 31.0 9.4 42 255-296 66-107 (193)
217 COG1730 GIM5 Predicted prefold 72.6 21 0.00046 30.9 7.8 68 236-303 11-120 (145)
218 KOG2264 Exostosin EXT1L [Signa 72.1 29 0.00063 36.6 9.7 54 246-299 97-150 (907)
219 KOG3850 Predicted membrane pro 72.1 37 0.0008 34.0 10.1 60 234-293 281-340 (455)
220 PF15463 ECM11: Extracellular 72.1 30 0.00065 29.4 8.5 57 236-292 78-134 (139)
221 KOG0447 Dynamin-like GTP bindi 72.0 19 0.0004 38.0 8.3 43 249-291 223-265 (980)
222 PF10779 XhlA: Haemolysin XhlA 71.8 22 0.00047 26.7 6.8 33 268-300 18-50 (71)
223 KOG0243 Kinesin-like protein [ 71.8 32 0.0007 38.4 10.6 65 232-296 442-513 (1041)
224 KOG2483 Upstream transcription 71.8 23 0.00049 33.0 8.3 69 229-297 67-139 (232)
225 PF07439 DUF1515: Protein of u 71.5 39 0.00085 28.0 8.6 36 261-296 24-59 (112)
226 KOG0995 Centromere-associated 70.8 14 0.0003 38.6 7.1 36 266-301 283-318 (581)
227 PF10205 KLRAQ: Predicted coil 70.8 57 0.0012 26.7 9.7 15 241-255 8-22 (102)
228 smart00502 BBC B-Box C-termina 70.7 50 0.0011 26.0 10.6 13 283-295 78-90 (127)
229 COG1340 Uncharacterized archae 70.2 46 0.00099 32.1 10.1 33 266-298 58-90 (294)
230 PF10234 Cluap1: Clusterin-ass 70.0 38 0.00082 32.2 9.4 63 13-77 23-89 (267)
231 PF12325 TMF_TATA_bd: TATA ele 69.9 58 0.0013 27.2 9.6 53 236-288 42-97 (120)
232 PF09730 BicD: Microtubule-ass 69.9 38 0.00082 36.6 10.4 60 239-298 35-97 (717)
233 PF12718 Tropomyosin_1: Tropom 69.9 40 0.00087 28.8 8.9 7 282-288 85-91 (143)
234 PF11221 Med21: Subunit 21 of 69.9 30 0.00066 29.5 8.1 44 253-296 98-141 (144)
235 PF05773 RWD: RWD domain; Int 69.8 25 0.00053 27.4 7.1 26 87-112 48-73 (113)
236 KOG2751 Beclin-like protein [S 69.6 24 0.00053 35.7 8.4 63 237-299 138-205 (447)
237 COG3883 Uncharacterized protei 69.6 59 0.0013 31.0 10.6 65 232-296 135-202 (265)
238 PRK06328 type III secretion sy 69.6 45 0.00099 30.6 9.7 67 227-293 21-90 (223)
239 TIGR01837 PHA_granule_1 poly(h 69.6 36 0.00077 28.2 8.2 20 278-297 97-116 (118)
240 PF08826 DMPK_coil: DMPK coile 69.2 44 0.00095 24.8 9.3 18 272-289 41-58 (61)
241 PRK10361 DNA recombination pro 69.2 62 0.0013 33.3 11.4 51 246-296 68-118 (475)
242 PF11180 DUF2968: Protein of u 69.2 45 0.00097 30.3 9.2 68 227-294 112-185 (192)
243 COG3879 Uncharacterized protei 69.1 32 0.0007 32.3 8.6 35 266-300 67-105 (247)
244 PF07439 DUF1515: Protein of u 69.0 21 0.00047 29.5 6.5 25 266-290 43-67 (112)
245 PRK04654 sec-independent trans 68.9 68 0.0015 29.6 10.5 9 275-283 77-85 (214)
246 KOG1924 RhoA GTPase effector D 68.9 15 0.00032 39.9 7.1 6 95-100 413-418 (1102)
247 TIGR02499 HrpE_YscL_not type I 68.9 58 0.0012 27.6 9.7 58 236-293 15-74 (166)
248 TIGR03185 DNA_S_dndD DNA sulfu 68.6 43 0.00092 35.4 10.5 26 271-296 263-288 (650)
249 cd04787 HTH_HMRTR_unk Helix-Tu 68.6 18 0.00039 30.2 6.4 38 263-300 79-116 (133)
250 PF04375 HemX: HemX; InterPro 68.6 50 0.0011 32.6 10.4 31 266-296 89-119 (372)
251 PF05010 TACC: Transforming ac 68.6 81 0.0018 28.9 11.0 36 264-299 166-204 (207)
252 PF09731 Mitofilin: Mitochondr 68.5 52 0.0011 34.1 11.0 6 266-271 333-338 (582)
253 PF11740 KfrA_N: Plasmid repli 68.5 58 0.0013 26.2 9.2 24 268-291 93-116 (120)
254 KOG2072 Translation initiation 68.5 45 0.00097 36.5 10.5 27 277-303 670-696 (988)
255 PF15030 DUF4527: Protein of u 68.3 31 0.00067 32.5 8.2 67 225-296 8-77 (277)
256 TIGR02894 DNA_bind_RsfA transc 68.3 23 0.00049 31.3 7.0 28 269-296 110-137 (161)
257 COG2433 Uncharacterized conser 68.3 49 0.0011 35.0 10.5 37 229-265 420-456 (652)
258 PF10392 COG5: Golgi transport 68.2 64 0.0014 27.0 9.6 64 236-299 31-94 (132)
259 PF14235 DUF4337: Domain of un 68.2 30 0.00065 30.2 7.8 36 253-288 70-105 (157)
260 PRK13729 conjugal transfer pil 68.2 19 0.00041 36.9 7.4 23 277-299 97-119 (475)
261 PF13125 DUF3958: Protein of u 68.0 64 0.0014 26.2 9.0 65 234-298 31-98 (99)
262 PF06188 HrpE: HrpE/YscL/FliH 68.0 91 0.002 27.9 11.6 69 226-294 21-92 (191)
263 cd00632 Prefoldin_beta Prefold 68.0 26 0.00056 28.0 7.0 33 266-298 66-98 (105)
264 COG5185 HEC1 Protein involved 67.8 23 0.0005 36.4 7.8 36 266-301 319-354 (622)
265 PF05700 BCAS2: Breast carcino 67.7 64 0.0014 29.4 10.3 32 268-299 187-218 (221)
266 PF10805 DUF2730: Protein of u 67.5 44 0.00096 27.1 8.2 34 266-299 68-101 (106)
267 PF01093 Clusterin: Clusterin; 67.5 49 0.0011 33.7 10.1 53 246-298 27-79 (436)
268 PRK08475 F0F1 ATP synthase sub 67.4 84 0.0018 27.4 10.6 52 234-285 49-100 (167)
269 KOG3501 Molecular chaperone Pr 67.4 27 0.00058 28.8 6.8 31 266-296 70-100 (114)
270 KOG0977 Nuclear envelope prote 67.3 51 0.0011 34.5 10.4 65 234-298 109-190 (546)
271 PF05700 BCAS2: Breast carcino 67.3 88 0.0019 28.5 11.1 64 234-297 139-209 (221)
272 PF10226 DUF2216: Uncharacteri 67.3 64 0.0014 29.3 9.8 20 277-296 108-127 (195)
273 KOG4001 Axonemal dynein light 67.3 19 0.00041 33.2 6.5 29 271-299 186-214 (259)
274 COG1382 GimC Prefoldin, chaper 67.2 19 0.00041 30.2 6.1 35 265-299 72-106 (119)
275 PF04012 PspA_IM30: PspA/IM30 67.1 58 0.0013 29.2 9.8 44 253-296 95-138 (221)
276 PF08606 Prp19: Prp19/Pso4-lik 67.1 54 0.0012 25.0 9.3 60 237-296 7-69 (70)
277 PF10212 TTKRSYEDQ: Predicted 66.9 42 0.00091 34.8 9.6 24 266-289 476-499 (518)
278 KOG1510 RNA polymerase II holo 66.9 83 0.0018 27.1 10.2 63 234-296 59-128 (139)
279 PF10669 Phage_Gp23: Protein g 66.9 69 0.0015 26.2 9.0 28 277-304 89-116 (121)
280 COG4942 Membrane-bound metallo 66.9 57 0.0012 33.0 10.4 17 280-296 227-243 (420)
281 PF09789 DUF2353: Uncharacteri 66.8 48 0.001 32.3 9.6 66 234-299 26-108 (319)
282 PF06810 Phage_GP20: Phage min 66.7 36 0.00077 29.6 8.0 6 278-283 59-64 (155)
283 PF15205 PLAC9: Placenta-speci 66.6 29 0.00063 26.4 6.3 39 261-299 20-58 (74)
284 PRK03947 prefoldin subunit alp 66.5 65 0.0014 26.9 9.4 30 267-296 98-127 (140)
285 KOG4005 Transcription factor X 66.5 79 0.0017 29.8 10.5 63 231-293 71-134 (292)
286 PF10018 Med4: Vitamin-D-recep 66.4 93 0.002 27.6 10.9 59 234-293 5-63 (188)
287 PRK09343 prefoldin subunit bet 66.3 75 0.0016 26.3 10.2 34 266-299 74-107 (121)
288 smart00302 GED Dynamin GTPase 66.3 28 0.0006 27.4 6.7 58 232-290 33-90 (92)
289 TIGR01554 major_cap_HK97 phage 66.2 22 0.00047 34.7 7.4 25 267-291 38-62 (378)
290 PRK09174 F0F1 ATP synthase sub 66.0 82 0.0018 28.5 10.5 40 240-279 86-125 (204)
291 PF14235 DUF4337: Domain of un 66.0 29 0.00064 30.3 7.3 36 265-300 68-103 (157)
292 smart00030 CLb CLUSTERIN Beta 65.9 39 0.00084 30.9 8.2 51 246-296 33-83 (206)
293 KOG0247 Kinesin-like protein [ 65.9 34 0.00074 36.9 9.0 47 258-304 529-575 (809)
294 PF06705 SF-assemblin: SF-asse 65.8 94 0.002 28.6 11.2 29 266-294 81-109 (247)
295 PRK10920 putative uroporphyrin 65.8 62 0.0013 32.4 10.5 61 237-297 66-126 (390)
296 PF06632 XRCC4: DNA double-str 65.6 51 0.0011 32.4 9.7 19 136-157 57-75 (342)
297 PF06785 UPF0242: Uncharacteri 65.6 40 0.00086 33.2 8.7 47 252-298 95-141 (401)
298 PF07795 DUF1635: Protein of u 65.5 60 0.0013 29.9 9.5 62 228-289 3-66 (214)
299 KOG0288 WD40 repeat protein Ti 65.4 64 0.0014 32.7 10.3 48 226-273 22-69 (459)
300 PF15397 DUF4618: Domain of un 65.2 80 0.0017 29.9 10.5 34 264-297 68-101 (258)
301 PF05055 DUF677: Protein of un 65.1 34 0.00073 33.6 8.3 25 275-299 293-317 (336)
302 PF04375 HemX: HemX; InterPro 65.0 44 0.00095 32.9 9.2 56 244-299 59-115 (372)
303 KOG4460 Nuclear pore complex, 64.9 72 0.0016 33.6 10.8 73 225-298 565-644 (741)
304 cd04769 HTH_MerR2 Helix-Turn-H 64.9 20 0.00043 29.2 5.8 38 261-298 77-114 (116)
305 KOG4460 Nuclear pore complex, 64.8 72 0.0016 33.6 10.8 12 125-136 336-347 (741)
306 PF10267 Tmemb_cc2: Predicted 64.8 50 0.0011 33.1 9.6 64 236-299 224-291 (395)
307 PF06825 HSBP1: Heat shock fac 64.7 13 0.00029 26.9 4.1 38 264-301 15-52 (54)
308 PRK00888 ftsB cell division pr 64.7 24 0.00051 28.7 6.1 34 266-299 30-63 (105)
309 KOG3863 bZIP transcription fac 64.6 14 0.00031 38.8 5.9 43 251-293 513-555 (604)
310 PF05957 DUF883: Bacterial pro 64.6 58 0.0013 25.4 8.2 21 268-288 40-60 (94)
311 PRK04654 sec-independent trans 64.5 47 0.001 30.6 8.5 17 262-278 71-87 (214)
312 KOG0976 Rho/Rac1-interacting s 64.3 32 0.00069 37.6 8.4 15 228-242 86-100 (1265)
313 PF04568 IATP: Mitochondrial A 64.3 42 0.00092 27.3 7.4 27 267-293 73-99 (100)
314 PHA02675 ORF104 fusion protein 64.3 54 0.0012 25.9 7.6 40 263-302 44-83 (90)
315 PRK11020 hypothetical protein; 64.3 42 0.00091 28.0 7.4 54 237-296 11-65 (118)
316 PF10828 DUF2570: Protein of u 64.2 77 0.0017 25.7 10.5 41 239-279 26-66 (110)
317 PRK12765 flagellar capping pro 64.1 38 0.00083 35.6 9.1 65 235-299 529-593 (595)
318 PF04420 CHD5: CHD5-like prote 63.9 13 0.00028 32.4 4.8 21 274-294 70-90 (161)
319 PRK00846 hypothetical protein; 63.9 67 0.0015 24.9 8.6 39 252-290 23-61 (77)
320 cd07653 F-BAR_CIP4-like The F- 63.9 1.1E+02 0.0025 27.7 11.3 60 234-293 87-146 (251)
321 PF11101 DUF2884: Protein of u 63.8 86 0.0019 28.8 10.4 34 264-297 183-216 (229)
322 PF08614 ATG16: Autophagy prot 63.8 26 0.00056 31.2 6.8 69 236-304 100-171 (194)
323 PF05837 CENP-H: Centromere pr 63.5 46 0.00099 27.0 7.6 48 241-288 20-69 (106)
324 PF15070 GOLGA2L5: Putative go 63.5 49 0.0011 35.1 9.7 31 235-265 33-63 (617)
325 PF05597 Phasin: Poly(hydroxya 63.5 64 0.0014 27.5 8.7 22 277-298 109-130 (132)
326 KOG2629 Peroxisomal membrane a 63.4 53 0.0011 31.7 9.0 54 244-297 128-181 (300)
327 PF09766 FimP: Fms-interacting 63.4 38 0.00082 33.3 8.4 32 266-297 111-142 (355)
328 KOG2196 Nuclear porin [Nuclear 63.2 77 0.0017 29.9 9.8 73 230-302 70-159 (254)
329 PRK10780 periplasmic chaperone 63.2 82 0.0018 27.2 9.7 30 234-263 46-75 (165)
330 PF10359 Fmp27_WPPW: RNA pol I 63.0 34 0.00073 34.9 8.2 33 266-298 196-228 (475)
331 PF10211 Ax_dynein_light: Axon 63.0 1.1E+02 0.0025 27.3 11.2 11 144-154 34-44 (189)
332 cd00632 Prefoldin_beta Prefold 62.9 77 0.0017 25.3 10.4 42 256-297 63-104 (105)
333 KOG0993 Rab5 GTPase effector R 62.8 40 0.00087 34.1 8.3 64 234-297 110-182 (542)
334 PF14197 Cep57_CLD_2: Centroso 62.7 64 0.0014 24.3 8.1 31 266-296 29-59 (69)
335 PLN02372 violaxanthin de-epoxi 62.7 74 0.0016 32.3 10.1 30 225-254 367-399 (455)
336 cd00584 Prefoldin_alpha Prefol 62.6 73 0.0016 26.1 8.9 71 234-304 2-121 (129)
337 PRK08032 fliD flagellar cappin 62.5 25 0.00054 35.7 7.2 71 229-299 359-435 (462)
338 PRK11546 zraP zinc resistance 62.4 1E+02 0.0023 26.6 10.5 21 235-255 51-71 (143)
339 PF08703 PLC-beta_C: PLC-beta 62.3 1.2E+02 0.0026 27.3 11.2 65 232-296 103-168 (185)
340 KOG0995 Centromere-associated 62.3 64 0.0014 33.8 10.0 18 280-297 335-352 (581)
341 PF05377 FlaC_arch: Flagella a 62.3 37 0.00081 24.7 6.0 18 279-296 23-40 (55)
342 TIGR02338 gimC_beta prefoldin, 62.2 82 0.0018 25.4 10.5 34 266-299 70-103 (110)
343 COG3206 GumC Uncharacterized p 62.2 37 0.0008 34.1 8.3 49 231-279 317-365 (458)
344 PF04102 SlyX: SlyX; InterPro 62.1 35 0.00076 25.5 6.2 40 251-290 13-52 (69)
345 PF08232 Striatin: Striatin fa 62.1 75 0.0016 26.9 8.9 60 229-288 12-71 (134)
346 KOG3091 Nuclear pore complex, 61.6 62 0.0014 33.4 9.6 24 266-289 469-492 (508)
347 PF14932 HAUS-augmin3: HAUS au 61.5 1.2E+02 0.0026 28.3 11.1 61 236-296 80-140 (256)
348 KOG0996 Structural maintenance 61.5 32 0.0007 38.9 8.1 15 242-256 409-423 (1293)
349 PHA01750 hypothetical protein 61.5 27 0.00058 26.5 5.3 28 256-283 42-69 (75)
350 PF12614 RRF_GI: Ribosome recy 61.5 24 0.00052 30.0 5.7 67 233-299 21-99 (128)
351 PF05278 PEARLI-4: Arabidopsis 61.4 1.4E+02 0.003 28.6 11.3 19 279-297 237-255 (269)
352 PF02563 Poly_export: Polysacc 61.4 11 0.00025 28.7 3.5 37 122-158 33-69 (82)
353 PF03961 DUF342: Protein of un 61.4 33 0.00072 34.5 7.8 62 238-299 334-404 (451)
354 PF05791 Bacillus_HBL: Bacillu 61.2 76 0.0016 28.1 9.2 45 254-298 105-149 (184)
355 TIGR02449 conserved hypothetic 61.2 54 0.0012 24.7 6.9 41 243-283 19-59 (65)
356 PF10498 IFT57: Intra-flagella 61.1 89 0.0019 30.9 10.5 11 14-24 47-57 (359)
357 PF12004 DUF3498: Domain of un 61.1 2.7 5.9E-05 43.1 0.0 9 104-112 174-182 (495)
358 PRK00295 hypothetical protein; 61.1 58 0.0013 24.4 7.2 43 244-290 11-53 (68)
359 PF05164 ZapA: Cell division p 60.6 35 0.00075 25.9 6.2 28 266-293 59-88 (89)
360 PF03904 DUF334: Domain of unk 60.5 1.1E+02 0.0025 28.4 10.3 28 267-294 121-148 (230)
361 KOG3119 Basic region leucine z 60.5 60 0.0013 30.7 8.9 29 266-294 225-253 (269)
362 PF14661 HAUS6_N: HAUS augmin- 60.4 38 0.00082 31.4 7.5 33 261-293 176-208 (247)
363 PF10158 LOH1CR12: Tumour supp 60.4 1.1E+02 0.0023 26.1 9.9 9 267-275 71-79 (131)
364 PF02388 FemAB: FemAB family; 60.4 56 0.0012 32.5 9.1 20 274-293 277-296 (406)
365 PF15070 GOLGA2L5: Putative go 60.4 63 0.0014 34.3 9.8 51 243-293 92-145 (617)
366 KOG0976 Rho/Rac1-interacting s 60.3 78 0.0017 34.8 10.4 16 238-253 85-100 (1265)
367 KOG0837 Transcriptional activa 60.3 46 0.001 31.6 7.9 40 255-294 223-265 (279)
368 PRK05771 V-type ATP synthase s 60.2 27 0.00059 36.8 7.2 26 273-298 96-121 (646)
369 PF00170 bZIP_1: bZIP transcri 60.2 63 0.0014 23.4 9.0 26 266-291 36-61 (64)
370 PF04912 Dynamitin: Dynamitin 60.2 70 0.0015 31.6 9.7 35 266-300 350-384 (388)
371 PF09730 BicD: Microtubule-ass 60.1 86 0.0019 33.9 10.8 69 229-298 358-433 (717)
372 KOG0977 Nuclear envelope prote 60.1 34 0.00073 35.8 7.6 44 253-296 89-132 (546)
373 KOG3647 Predicted coiled-coil 60.0 97 0.0021 29.8 10.0 13 232-244 110-122 (338)
374 PF14462 Prok-E2_E: Prokaryoti 59.9 71 0.0015 26.9 8.2 89 66-158 21-121 (122)
375 KOG0994 Extracellular matrix g 59.8 25 0.00055 39.8 6.9 57 243-299 1230-1289(1758)
376 PF04048 Sec8_exocyst: Sec8 ex 59.6 75 0.0016 26.9 8.6 59 233-291 53-111 (142)
377 PF13094 CENP-Q: CENP-Q, a CEN 59.6 93 0.002 26.6 9.3 52 242-293 31-85 (160)
378 PF14257 DUF4349: Domain of un 59.4 51 0.0011 30.5 8.2 19 275-293 174-192 (262)
379 COG0172 SerS Seryl-tRNA synthe 59.3 60 0.0013 32.9 9.1 31 266-296 71-101 (429)
380 PF10205 KLRAQ: Predicted coil 59.3 87 0.0019 25.6 8.4 22 268-289 52-73 (102)
381 PF13851 GAS: Growth-arrest sp 59.2 1.4E+02 0.003 27.0 10.7 27 271-297 94-120 (201)
382 PF00261 Tropomyosin: Tropomyo 59.2 84 0.0018 28.8 9.5 20 272-291 171-190 (237)
383 KOG3433 Protein involved in me 59.2 1.2E+02 0.0027 27.4 10.0 60 230-289 77-142 (203)
384 TIGR02231 conserved hypothetic 58.9 58 0.0013 33.3 9.2 33 266-298 141-173 (525)
385 TIGR02338 gimC_beta prefoldin, 58.8 41 0.00089 27.2 6.6 33 264-296 75-107 (110)
386 PF08702 Fib_alpha: Fibrinogen 58.7 1.1E+02 0.0024 26.3 9.5 24 273-296 107-130 (146)
387 cd00890 Prefoldin Prefoldin is 58.5 44 0.00095 27.0 6.8 30 266-295 97-126 (129)
388 PF14257 DUF4349: Domain of un 58.5 56 0.0012 30.2 8.3 28 274-301 166-193 (262)
389 PF12999 PRKCSH-like: Glucosid 58.5 55 0.0012 29.3 7.8 22 277-298 153-174 (176)
390 PF05615 THOC7: Tho complex su 58.4 1.1E+02 0.0024 25.6 9.4 48 246-293 64-111 (139)
391 PF14389 Lzipper-MIP1: Leucine 58.3 14 0.0003 29.2 3.5 34 230-263 7-40 (88)
392 smart00591 RWD domain in RING 58.3 11 0.00024 29.3 3.0 24 88-111 41-64 (107)
393 PF04568 IATP: Mitochondrial A 58.3 63 0.0014 26.3 7.4 36 251-286 64-99 (100)
394 PRK07739 flgK flagellar hook-a 58.3 91 0.002 32.0 10.4 67 232-298 147-223 (507)
395 PF03148 Tektin: Tektin family 58.3 79 0.0017 31.3 9.7 29 266-294 261-289 (384)
396 PF04899 MbeD_MobD: MbeD/MobD 58.3 80 0.0017 24.0 8.9 65 237-301 2-66 (70)
397 PF05667 DUF812: Protein of un 58.2 64 0.0014 34.1 9.5 10 41-50 67-76 (594)
398 PRK04863 mukB cell division pr 58.2 48 0.001 38.7 9.2 59 238-296 985-1046(1486)
399 KOG3684 Ca2+-activated K+ chan 58.2 65 0.0014 33.0 9.0 37 266-302 423-459 (489)
400 PRK03947 prefoldin subunit alp 58.0 1.1E+02 0.0024 25.5 9.5 28 271-298 95-122 (140)
401 PF08581 Tup_N: Tup N-terminal 58.0 87 0.0019 24.3 8.7 18 235-252 8-25 (79)
402 PF05103 DivIVA: DivIVA protei 57.9 8 0.00017 31.7 2.3 10 228-237 23-32 (131)
403 TIGR01837 PHA_granule_1 poly(h 57.9 1.1E+02 0.0023 25.3 9.6 30 272-301 80-113 (118)
404 PF12718 Tropomyosin_1: Tropom 57.9 1.1E+02 0.0023 26.2 9.2 25 274-298 112-136 (143)
405 KOG4348 Adaptor protein CMS/SE 57.6 59 0.0013 33.3 8.5 54 241-294 572-625 (627)
406 PRK00247 putative inner membra 57.6 82 0.0018 32.0 9.7 42 240-281 322-363 (429)
407 PF07851 TMPIT: TMPIT-like pro 57.6 67 0.0014 31.5 8.8 32 234-265 28-59 (330)
408 cd04770 HTH_HMRTR Helix-Turn-H 57.6 33 0.00072 27.9 5.9 37 262-298 78-114 (123)
409 PRK02793 phi X174 lysis protei 57.5 61 0.0013 24.6 6.9 40 246-289 16-55 (72)
410 PF02388 FemAB: FemAB family; 57.5 51 0.0011 32.8 8.3 34 264-298 261-294 (406)
411 cd01109 HTH_YyaN Helix-Turn-He 57.4 36 0.00077 27.4 6.0 28 266-293 82-109 (113)
412 PRK08724 fliD flagellar cappin 57.3 40 0.00087 36.1 7.8 68 230-297 574-644 (673)
413 PF05010 TACC: Transforming ac 57.3 76 0.0017 29.0 8.7 28 266-293 93-120 (207)
414 PRK04098 sec-independent trans 57.2 97 0.0021 27.3 8.9 45 239-284 35-79 (158)
415 PF13851 GAS: Growth-arrest sp 57.2 1.1E+02 0.0023 27.7 9.6 27 266-292 103-129 (201)
416 COG4345 Uncharacterized protei 57.2 45 0.00098 29.7 6.8 48 245-292 132-179 (181)
417 PF03670 UPF0184: Uncharacteri 57.1 64 0.0014 25.4 7.0 50 246-295 27-76 (83)
418 PF13863 DUF4200: Domain of un 57.1 1E+02 0.0022 24.9 10.0 15 280-294 91-105 (126)
419 PF00170 bZIP_1: bZIP transcri 57.1 72 0.0016 23.1 9.8 44 242-285 19-62 (64)
420 PF03234 CDC37_N: Cdc37 N term 57.0 32 0.0007 30.7 6.1 51 235-287 112-162 (177)
421 KOG4603 TBP-1 interacting prot 57.0 1.2E+02 0.0027 27.2 9.5 57 238-298 79-137 (201)
422 PF06721 DUF1204: Protein of u 56.8 1.6E+02 0.0034 26.9 10.3 40 233-272 31-70 (228)
423 PF06637 PV-1: PV-1 protein (P 56.7 1E+02 0.0022 31.0 9.8 22 268-289 354-375 (442)
424 COG1196 Smc Chromosome segrega 56.6 99 0.0021 35.1 11.2 23 274-296 874-896 (1163)
425 PF04977 DivIC: Septum formati 56.6 37 0.00081 25.0 5.6 31 266-296 20-50 (80)
426 COG4980 GvpP Gas vesicle prote 56.6 1.2E+02 0.0025 25.4 9.4 34 264-297 77-110 (115)
427 KOG2129 Uncharacterized conser 56.5 95 0.0021 31.6 9.7 33 233-265 248-281 (552)
428 PF12777 MT: Microtubule-bindi 56.1 43 0.00092 32.6 7.3 61 239-299 243-306 (344)
429 PF09403 FadA: Adhesion protei 56.1 1.2E+02 0.0027 25.5 12.0 19 275-293 98-116 (126)
430 COG4372 Uncharacterized protei 56.0 85 0.0018 31.7 9.2 60 237-296 143-205 (499)
431 TIGR02044 CueR Cu(I)-responsiv 56.0 33 0.00071 28.4 5.7 35 262-296 78-112 (127)
432 PF14723 SSFA2_C: Sperm-specif 56.0 1.3E+02 0.0028 27.0 9.5 31 267-297 142-172 (179)
433 KOG3119 Basic region leucine z 56.0 70 0.0015 30.2 8.5 33 266-298 218-250 (269)
434 PF12128 DUF3584: Protein of u 55.9 79 0.0017 36.0 10.3 54 242-295 820-873 (1201)
435 PF06103 DUF948: Bacterial pro 55.8 92 0.002 24.0 9.3 49 246-294 27-75 (90)
436 COG3334 Uncharacterized conser 55.8 1.6E+02 0.0035 26.7 10.4 27 226-252 55-81 (192)
437 TIGR02449 conserved hypothetic 55.8 86 0.0019 23.6 8.4 38 256-296 21-58 (65)
438 cd04785 HTH_CadR-PbrR-like Hel 55.7 34 0.00075 28.2 5.8 35 263-297 79-113 (126)
439 COG5293 Predicted ATPase [Gene 55.6 62 0.0014 33.3 8.4 26 274-299 383-408 (591)
440 PF11944 DUF3461: Protein of u 55.6 44 0.00095 28.2 6.2 46 243-288 79-124 (125)
441 KOG4552 Vitamin-D-receptor int 55.6 1.1E+02 0.0023 28.5 9.2 43 250-296 51-93 (272)
442 KOG2010 Double stranded RNA bi 55.5 1.3E+02 0.0028 29.7 10.2 65 230-294 115-199 (405)
443 PF09755 DUF2046: Uncharacteri 55.4 1.4E+02 0.003 29.1 10.5 68 227-294 102-173 (310)
444 KOG4674 Uncharacterized conser 55.4 83 0.0018 37.4 10.3 64 234-297 755-818 (1822)
445 PF10018 Med4: Vitamin-D-recep 55.4 1E+02 0.0022 27.4 9.0 36 244-279 28-63 (188)
446 KOG3756 Pinin (desmosome-assoc 55.4 1.6E+02 0.0034 28.9 10.7 45 229-273 166-210 (340)
447 PF12126 DUF3583: Protein of u 55.3 1.3E+02 0.0028 29.2 10.1 26 272-297 63-88 (324)
448 PF15066 CAGE1: Cancer-associa 55.3 43 0.00094 34.3 7.2 50 246-298 450-499 (527)
449 PRK14011 prefoldin subunit alp 55.3 92 0.002 26.9 8.4 42 241-282 91-132 (144)
450 PF03938 OmpH: Outer membrane 55.3 79 0.0017 26.6 8.1 33 238-270 36-68 (158)
451 KOG0972 Huntingtin interacting 55.0 1.2E+02 0.0026 29.6 9.8 71 228-298 249-326 (384)
452 KOG0993 Rab5 GTPase effector R 54.8 74 0.0016 32.3 8.7 61 235-295 296-363 (542)
453 PF12761 End3: Actin cytoskele 54.8 1.7E+02 0.0037 26.7 11.6 76 222-297 91-180 (195)
454 PRK14143 heat shock protein Gr 54.5 87 0.0019 29.3 8.7 19 276-294 117-135 (238)
455 PF15372 DUF4600: Domain of un 54.5 1.2E+02 0.0026 25.9 8.8 65 232-298 9-79 (129)
456 PF02212 GED: Dynamin GTPase e 54.5 29 0.00063 27.1 4.9 55 235-290 36-90 (92)
457 PRK04325 hypothetical protein; 54.5 72 0.0016 24.3 6.9 45 246-290 13-57 (74)
458 TIGR03495 phage_LysB phage lys 54.5 1.3E+02 0.0028 25.7 9.1 36 262-297 60-95 (135)
459 PF15237 PTRF_SDPR: PTRF/SDPR 54.5 42 0.00092 31.5 6.6 40 252-291 12-51 (246)
460 PRK04778 septation ring format 54.4 1.4E+02 0.0031 31.0 11.3 41 256-296 383-423 (569)
461 PF11262 Tho2: Transcription f 54.4 80 0.0017 30.2 8.8 45 246-290 47-91 (298)
462 PRK05431 seryl-tRNA synthetase 54.3 72 0.0016 32.1 8.8 26 274-299 70-95 (425)
463 cd04784 HTH_CadR-PbrR Helix-Tu 54.2 40 0.00087 27.7 5.9 37 262-298 78-114 (127)
464 KOG1899 LAR transmembrane tyro 54.2 59 0.0013 34.7 8.2 59 232-290 151-215 (861)
465 PF15294 Leu_zip: Leucine zipp 54.1 1.2E+02 0.0026 29.1 9.7 48 226-273 127-174 (278)
466 COG0216 PrfA Protein chain rel 54.1 83 0.0018 31.1 8.7 26 272-297 78-103 (363)
467 PF15619 Lebercilin: Ciliary p 54.0 98 0.0021 27.9 8.8 22 272-293 56-77 (194)
468 PF11853 DUF3373: Protein of u 54.0 11 0.00024 38.8 2.9 26 273-298 34-59 (489)
469 PRK00736 hypothetical protein; 53.9 81 0.0017 23.6 6.9 45 246-290 9-53 (68)
470 PF10475 DUF2450: Protein of u 53.9 2E+02 0.0043 27.2 11.3 73 227-299 35-108 (291)
471 PRK06975 bifunctional uroporph 53.9 3E+02 0.0066 29.3 16.5 148 147-304 257-405 (656)
472 cd00890 Prefoldin Prefoldin is 53.9 38 0.00082 27.4 5.7 44 260-303 84-127 (129)
473 PF03954 Lectin_N: Hepatic lec 53.8 53 0.0012 28.3 6.6 66 232-297 67-132 (138)
474 COG1730 GIM5 Predicted prefold 53.8 55 0.0012 28.3 6.8 48 252-299 90-137 (145)
475 PRK08032 fliD flagellar cappin 53.7 62 0.0013 32.9 8.3 60 235-294 403-462 (462)
476 KOG1103 Predicted coiled-coil 53.7 48 0.001 33.0 7.1 68 227-294 230-297 (561)
477 PRK07352 F0F1 ATP synthase sub 53.6 1.5E+02 0.0032 25.7 10.1 61 233-293 45-105 (174)
478 PF03954 Lectin_N: Hepatic lec 53.6 35 0.00075 29.4 5.4 52 242-293 59-117 (138)
479 PF04912 Dynamitin: Dynamitin 53.6 1.1E+02 0.0023 30.3 9.8 66 238-303 322-387 (388)
480 PF06428 Sec2p: GDP/GTP exchan 53.6 1.1E+02 0.0025 24.7 8.2 67 238-304 4-71 (100)
481 KOG0996 Structural maintenance 53.5 1E+02 0.0022 35.2 10.2 69 231-299 514-585 (1293)
482 PRK04406 hypothetical protein; 53.3 75 0.0016 24.3 6.8 45 246-290 15-59 (75)
483 KOG0946 ER-Golgi vesicle-tethe 53.3 91 0.002 34.3 9.5 62 238-299 653-714 (970)
484 KOG0612 Rho-associated, coiled 53.3 46 0.00099 37.9 7.6 69 232-302 743-811 (1317)
485 PF04102 SlyX: SlyX; InterPro 53.3 93 0.002 23.2 7.6 52 253-304 1-52 (69)
486 TIGR00606 rad50 rad50. This fa 53.2 99 0.0022 35.5 10.6 74 230-304 842-915 (1311)
487 PRK00846 hypothetical protein; 53.1 1.1E+02 0.0023 23.8 8.7 57 234-290 5-61 (77)
488 PF07195 FliD_C: Flagellar hoo 53.1 58 0.0013 29.8 7.4 71 229-299 138-222 (239)
489 PRK04778 septation ring format 53.1 68 0.0015 33.4 8.7 61 238-298 348-411 (569)
490 PF10243 MIP-T3: Microtubule-b 53.1 4.5 9.7E-05 41.8 0.0 68 236-303 454-521 (539)
491 PF10960 DUF2762: Protein of u 53.0 62 0.0013 24.7 6.2 44 258-301 27-70 (71)
492 PRK10920 putative uroporphyrin 53.0 1E+02 0.0022 30.9 9.5 60 240-299 62-121 (390)
493 PF14584 DUF4446: Protein of u 52.9 40 0.00086 29.3 5.8 61 243-303 21-86 (151)
494 TIGR02168 SMC_prok_B chromosom 52.9 85 0.0018 34.5 9.8 73 232-304 692-767 (1179)
495 TIGR02047 CadR-PbrR Cd(II)/Pb( 52.9 40 0.00087 27.9 5.7 57 245-301 61-117 (127)
496 TIGR01843 type_I_hlyD type I s 52.8 1.1E+02 0.0024 29.6 9.6 73 232-304 138-230 (423)
497 TIGR02977 phageshock_pspA phag 52.8 1.5E+02 0.0032 26.9 9.9 71 229-299 72-142 (219)
498 PF07334 IFP_35_N: Interferon- 52.8 30 0.00064 26.9 4.4 33 266-298 3-35 (76)
499 PRK10869 recombination and rep 52.8 75 0.0016 33.1 8.9 76 229-304 139-225 (553)
500 PRK04325 hypothetical protein; 52.7 1E+02 0.0022 23.5 8.2 52 233-284 4-55 (74)
No 1
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-60 Score=447.08 Aligned_cols=263 Identities=41% Similarity=0.672 Sum_probs=204.5
Q ss_pred HHHHHHHHhcCCCCCCCCCCchhhHHHHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEE
Q 039489 15 IQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVII 94 (304)
Q Consensus 15 ~~~wL~~vl~~~~~~a~~Y~~~~k~~v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~I 94 (304)
+.||+++++. |....+|++++|++++|..|++|+|+|++|+|+||++++||+++||||+.|+|++|||||+|
T Consensus 3 ~~q~~~~~~~--------~~~~~~~~~~~~~l~lls~~~sL~P~t~tf~~~Dg~s~~ll~~~GTIp~~~~G~tYnIPV~i 74 (365)
T KOG2391|consen 3 VSQRQPKVIP--------YIYNYKDLTRQDLLNLLSSFKSLRPKTDTFTHNDGRSRLLLQLDGTIPVPYQGVTYNIPVII 74 (365)
T ss_pred ccccccceec--------ccccchhhHHHHHHHHHHhccccCcccceEEecCCCccchhhccCcccccccCCcccceEEE
Confidence 5677777775 44445899999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccccccCCCCCHHHHHHHHHHHhccCCCCCCCCC---CCCC
Q 039489 95 WLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYSQRR---PSPS 171 (304)
Q Consensus 95 wlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~~W~~~~s~L~~Lv~~l~~~F~~~pPl~~~~~---~~~~ 171 (304)
||+++||+.||+|||+||++|.||. |.|||+||+|||||||+|.+++|||++||++|+..|+++||+|+++. ++||
T Consensus 75 WlldtyP~~pP~c~VnPT~~M~ik~-~~hVd~nG~V~LPYLh~W~~pssdLv~Liq~l~a~f~~~pP~ys~~~~~~p~p~ 153 (365)
T KOG2391|consen 75 WLLDTYPYYPPICYVNPTSTMIIKV-HEHVDPNGKVYLPYLHNWDPPSSDLVGLIQELIAAFSEDPPVYSRSLPSPPPPY 153 (365)
T ss_pred EecccCCCCCCeEEecCCchhhhHH-hhccCCCCeEechhhccCCCccchHHHHHHHHHHHhcCCCccccCCCCCCCCCC
Confidence 9999999999999999999999977 99999999999999999999999999999999999999999999765 4555
Q ss_pred CCCCCCCCCCC--CCCCCCCCCCCCC-CC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 039489 172 PNSSPNPNPSH--NQSNPAVMSNYGP-SP---SPQARPQPARPFPPSPYGGRPQPQPQTEDQTEVFKRNAVNKLVEMVHA 245 (304)
Q Consensus 172 p~~~~~p~~~~--~~~~~~~~~~~~~-~~---~~~p~~~~~~~~pp~p~~~~~~~~~~~~~a~E~~r~s~lsal~dkl~~ 245 (304)
|+..|++++.. .+..++|+|.+++ |+ .+|..-....+||+-+ +.--.||++.++++.|++++
T Consensus 154 p~~~~~~~p~~p~~~~~~~p~p~p~~~~gas~~~~~~~d~~~~yp~n~------------~~~~~irasvisa~~eklR~ 221 (365)
T KOG2391|consen 154 PQTEYNTPPLKPKGSAYKPPLPPPPPPGGASALPYMTDDNAEPYPPNA------------SGKLVIRASVISAVREKLRR 221 (365)
T ss_pred CcccCCCCCCCCCCcCcCCCCCCCCCCCccccCcccCCCCCCcCCCCc------------ccccchhHHHHHHHHHHHHH
Confidence 55555554431 1112223332211 11 1121111122233211 11122999999999999998
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 246 DITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 246 el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
++++.+.+.++|+++++++++||+.++++|+.++++|+++..+|+++++.|..
T Consensus 222 r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~ 274 (365)
T KOG2391|consen 222 RREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKS 274 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 88887777777777777777777777777777777777777777777766643
No 2
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=100.00 E-value=3.8e-45 Score=304.48 Aligned_cols=121 Identities=57% Similarity=0.987 Sum_probs=109.7
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489 41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP 120 (304)
Q Consensus 41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~ 120 (304)
+++|+..+|++||+|+|++++||++||++++||||+|||||.|+|.+|||||+|||+++||++||+|||+|+.+|.|+..
T Consensus 1 ~~~d~~~~l~~y~~L~p~~~~ft~~~G~~~~LL~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~ 80 (121)
T PF05743_consen 1 TFNDVLSVLQNYPSLRPRTDTFTFNDGSSKLLLCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPS 80 (121)
T ss_dssp HHHHHHHHHHHSTTEEEEEEEEESTTSTEEEEEEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGC
T ss_pred CHHHHHHHHHHCCCCcEeeeeeEcCCCChheEEEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999775
Q ss_pred CCcccCCCceeccccccccCCCCCHHHHHHHHHHHhccCCCC
Q 039489 121 HPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPL 162 (304)
Q Consensus 121 ~~~Vd~~G~v~lpyL~~W~~~~s~L~~Lv~~l~~~F~~~pPl 162 (304)
| |||+||+|++|||++|+.++|||++||++|+++|+++|||
T Consensus 81 ~-~Vd~~G~v~~pyL~~W~~~~s~L~~lv~~l~~~F~~~pPl 121 (121)
T PF05743_consen 81 H-HVDSNGRVYLPYLQNWNPPSSNLVDLVQELQAVFSEEPPL 121 (121)
T ss_dssp C-CB-TTSBB-SHHHHT--TTTS-HHHHHHHHHHCCCHS-SE
T ss_pred C-eECCCCCEeCchhccCCCCCCCHHHHHHHHHHHHhHcCCC
Confidence 5 9999999999999999999999999999999999999996
No 3
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=2.5e-10 Score=108.79 Aligned_cols=190 Identities=28% Similarity=0.347 Sum_probs=121.3
Q ss_pred CCCCCCeEEEecCCCceecCCCCcccCCC--ce-eccccc--cccCC------CCCHHHHHHHHHHHhccCCCCCCCCCC
Q 039489 100 YPRHPPCVYVNPTRDMIIKRPHPHVTPSG--LV-SIPYLQ--NWIYP------SSNLVDLVRELSACFSREPPLYSQRRP 168 (304)
Q Consensus 100 YP~~pPivyV~pt~~m~I~~~~~~Vd~~G--~v-~lpyL~--~W~~~------~s~L~~Lv~~l~~~F~~~pPl~~~~~~ 168 (304)
=+++=|+|+..+... -.+.+--+|++.- .| .+-|++ -|.+= ..-=.+|+..++..|.. |+...+
T Consensus 66 ~tYnIPV~iWlldty-P~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh~W~~pssdLv~Liq~l~a~----f~~~pP 140 (365)
T KOG2391|consen 66 VTYNIPVIIWLLDTY-PYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLHNWDPPSSDLVGLIQELIAA----FSEDPP 140 (365)
T ss_pred CcccceEEEEecccC-CCCCCeEEecCCchhhhHHhhccCCCCeEechhhccCCCccchHHHHHHHHHHH----hcCCCc
Confidence 467889998876422 1112233444322 11 134444 34420 22448899999999988 665432
Q ss_pred CCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCChHHHHHHHHHHHHH---HH
Q 039489 169 SPS--PNSSPNPNPSHNQSNPAVMSNYGPSPSPQARPQPARPFPPSPYGGRPQ-PQPQTEDQTEVFKRNAVNKLV---EM 242 (304)
Q Consensus 169 ~~~--p~~~~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~pp~p~~~~~~-~~~~~~~a~E~~r~s~lsal~---dk 242 (304)
--. -++++.|++.+ .+.+.+..++|.+.++ |+|++|++++.+ ..-.+.++.+.+.+++..... ..
T Consensus 141 ~ys~~~~~~p~p~p~~---~~~~~p~~p~~~~~~~------p~p~p~~~~gas~~~~~~~d~~~~yp~n~~~~~~irasv 211 (365)
T KOG2391|consen 141 VYSRSLPSPPPPYPQT---EYNTPPLKPKGSAYKP------PLPPPPPPGGASALPYMTDDNAEPYPPNASGKLVIRASV 211 (365)
T ss_pred cccCCCCCCCCCCCcc---cCCCCCCCCCCcCcCC------CCCCCCCCCccccCcccCCCCCCcCCCCcccccchhHHH
Confidence 111 12233444321 1111111222221122 233322222222 222355778888888888887 88
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 039489 243 VHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDIL 303 (304)
Q Consensus 243 l~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~ 303 (304)
+++..+.+|++.++||+.+.+.|+.|++++++|+++.++|+.++++||++.+.|.+|+|||
T Consensus 212 isa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL 272 (365)
T KOG2391|consen 212 ISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDIL 272 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 8889999999999999999999999999999999999999999999999999999999997
No 4
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.16 E-value=3.3e-10 Score=96.36 Aligned_cols=105 Identities=21% Similarity=0.387 Sum_probs=79.3
Q ss_pred HHHHHHHHHhCCCCccccceeecCCCceee-EEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489 42 RQHLLTLISTFPSLDPKTATFTHNDGRSVN-LLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP 120 (304)
Q Consensus 42 ~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~-LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~ 120 (304)
.+|+..+...-+ +...++..+||.... -.++.|.-...|+|..| .+.|+|+++||.+||.|++... .-
T Consensus 4 ~~E~~~~~~~~~---~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f--~~~l~~p~~yP~~pP~v~f~~~------i~ 72 (145)
T smart00212 4 LKELKELLKDPP---PGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIF--KLTIEFPPDYPFKPPKVKFITK------IY 72 (145)
T ss_pred HHHHHHHHhCCC---CCeEEEECCCCChheEEEEEEcCCCCCcCCcEE--EEEEECCcccCCCCCEEEEeCC------ce
Confidence 366666655433 233345555542222 24456655677999887 5699999999999999999743 23
Q ss_pred CCcccCCCceeccccc--cccCCCCCHHHHHHHHHHHhcc
Q 039489 121 HPHVTPSGLVSIPYLQ--NWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 121 ~~~Vd~~G~v~lpyL~--~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
|++||.+|.||+++|. +|++ ..+|.+++..|..+|.+
T Consensus 73 Hp~i~~~G~icl~~l~~~~W~p-~~~l~~il~~i~~~l~~ 111 (145)
T smart00212 73 HPNVDSSGEICLDILKQEKWSP-ATTLETVLLSIQSLLSE 111 (145)
T ss_pred EeeECCCCCEehhhcCCCCCCC-CCcHHHHHHHHHHHHhC
Confidence 9999999999999998 9996 79999999999999975
No 5
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=98.98 E-value=5.1e-09 Score=88.65 Aligned_cols=105 Identities=21% Similarity=0.313 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489 41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP 120 (304)
Q Consensus 41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~ 120 (304)
+.+|...+.+.-+ ....+...++.-.+-.++|.|.--..|+|..|.+ .|+++++||.+||.|.+. + . .-
T Consensus 4 l~~E~~~l~~~~~---~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~--~~~~p~~yP~~pP~v~f~-~---~--i~ 72 (141)
T cd00195 4 LQKELKDLKKDPP---SGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKL--DIEFPEDYPFKPPKVRFV-T---K--IY 72 (141)
T ss_pred HHHHHHHHHhCCC---CCeEEEECCCChhEEEEEEecCCCCCccCCEEEE--EEECCCccCCCCCeEEEe-C---C--cc
Confidence 4477777765433 1122223334333444555554445588888877 999999999999999996 2 1 24
Q ss_pred CCcccCCCceecccccc--ccCCCCCHHHHHHHHHHHhc
Q 039489 121 HPHVTPSGLVSIPYLQN--WIYPSSNLVDLVRELSACFS 157 (304)
Q Consensus 121 ~~~Vd~~G~v~lpyL~~--W~~~~s~L~~Lv~~l~~~F~ 157 (304)
|++||.+|.||+.+|.. |.+ ..+|.++|..|...|.
T Consensus 73 HpnV~~~G~icl~~l~~~~W~p-~~~l~~il~~i~~~l~ 110 (141)
T cd00195 73 HPNVDENGKICLSILKTHGWSP-AYTLRTVLLSLQSLLN 110 (141)
T ss_pred cCCCCCCCCCchhhcCCCCcCC-cCcHHHHHHHHHHHHh
Confidence 99999999999999985 886 7789999999999998
No 6
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=98.87 E-value=2.3e-08 Score=86.00 Aligned_cols=106 Identities=19% Similarity=0.355 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489 41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP 120 (304)
Q Consensus 41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~ 120 (304)
+.+|+..+...-+ +.....-.++.-..--..|.|---..|+|..|.+ .|.|+++||+.||.|.+. |. | -
T Consensus 6 l~kE~~~l~~~~~---~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~--~i~fp~~YP~~pP~v~f~-t~---i--~ 74 (147)
T PLN00172 6 IQKEHKDLLKDPP---SNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFL--SILFPPDYPFKPPKVQFT-TK---I--Y 74 (147)
T ss_pred HHHHHHHHHhCCC---CCeEEEECCCChheEEEEEECCCCCCCCCCEEEE--EEECCcccCCCCCEEEEe-cC---c--c
Confidence 5578888865422 1122222333323333455665456799988876 889999999999999885 53 2 3
Q ss_pred CCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489 121 HPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 121 ~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
|++||.+|.||+.+|. +|++ ..+|.+++..|...|..
T Consensus 75 HPNv~~~G~iCl~il~~~W~p-~~ti~~il~~i~~ll~~ 112 (147)
T PLN00172 75 HPNINSNGSICLDILRDQWSP-ALTVSKVLLSISSLLTD 112 (147)
T ss_pred cceECCCCEEEcccCcCCCCC-cCcHHHHHHHHHHHHhC
Confidence 9999999999999995 8997 78999999999998854
No 7
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=98.87 E-value=2.2e-08 Score=86.59 Aligned_cols=106 Identities=22% Similarity=0.372 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489 41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP 120 (304)
Q Consensus 41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~ 120 (304)
+.+|+..+...-+ -. ...+..+|.-..--+.|.|.--..|+|..|.+ .|.++.+||+.||.|.+. |. + -
T Consensus 7 l~~E~~~l~~~~~-~~--i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~--~i~~p~~YP~~pP~v~F~-t~--i---~ 75 (152)
T PTZ00390 7 IEKETQNLANDPP-PG--IKAEPDPGNYRHFKILMEGPDGTPYEGGYYKL--ELFLPEQYPMEPPKVRFL-TK--I---Y 75 (152)
T ss_pred HHHHHHHHHhCCC-CC--eEEEECCCCccEEEEEEEcCCCCCCcCcEEEE--EEECccccCCCCCEEEEe-cC--C---e
Confidence 4577777754322 22 22233233222223444554446688888776 899999999999999885 53 2 3
Q ss_pred CCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489 121 HPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 121 ~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
|++||.+|.||+.+|. +|++ ..++.+++..|...|..
T Consensus 76 HPNV~~~G~iCl~iL~~~W~p-~~ti~~iL~~i~~ll~~ 113 (152)
T PTZ00390 76 HPNIDKLGRICLDILKDKWSP-ALQIRTVLLSIQALLSA 113 (152)
T ss_pred eceECCCCeEECccCcccCCC-CCcHHHHHHHHHHHHhC
Confidence 9999999999999995 8997 88999999999998863
No 8
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=3.6e-08 Score=85.47 Aligned_cols=106 Identities=25% Similarity=0.391 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhCCCCccccceeecCC-CceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecC
Q 039489 41 IRQHLLTLISTFPSLDPKTATFTHND-GRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKR 119 (304)
Q Consensus 41 v~~dv~~vl~~yp~L~p~~~~ft~~d-G~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~ 119 (304)
+.+|+..+...-+ +.+...-.+| --..--..+.|----.|.|..|.+ .|-+|++||+.||.|.+. ++ +
T Consensus 10 L~kE~~~l~~~~~---~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~--~l~fP~~YP~~PPkv~F~-t~--i--- 78 (153)
T COG5078 10 LLKELKKLQKDPP---PGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKL--TLEFPEDYPFKPPKVRFT-TK--I--- 78 (153)
T ss_pred HHHHHHHHhcCCC---CceEEEECCCCcceeEEEEEECCCCCCcCCCEEEE--EEECCCCCCCCCCeeeec-cC--C---
Confidence 4477877766542 2222222222 222233445555567899999988 899999999999999885 33 2
Q ss_pred CCCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489 120 PHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 120 ~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
-|++||.+|+||+.+|+ +|++ ..+|..++..|+..|.+
T Consensus 79 ~HPNV~~~G~vCLdIL~~~WsP-~~~l~sILlsl~slL~~ 117 (153)
T COG5078 79 FHPNVDPSGNVCLDILKDRWSP-VYTLETILLSLQSLLLS 117 (153)
T ss_pred cCCCcCCCCCChhHHHhCCCCc-cccHHHHHHHHHHHHcC
Confidence 39999999999999999 9996 99999999999998876
No 9
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.6e-08 Score=85.93 Aligned_cols=100 Identities=22% Similarity=0.482 Sum_probs=80.2
Q ss_pred HHHHHHHHHh-CCCCccccceeecCCCceeeEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCce
Q 039489 42 RQHLLTLIST-FPSLDPKTATFTHNDGRSVNLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMI 116 (304)
Q Consensus 42 ~~dv~~vl~~-yp~L~p~~~~ft~~dG~~~~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~ 116 (304)
.++++.++.. -++.. .|.++- +|++-.||| -..|.|.+|.+ .+-+|.+||+.||+|.+. |+ .
T Consensus 35 q~ELm~Lmms~~~gIS------AFP~~d--nlf~WvGtItGp~dTvyegl~ykl--Sl~Fp~~YPy~pP~vkFl-tp--c 101 (175)
T KOG0421|consen 35 QSELMGLMMSNTPGIS------AFPESD--NLFKWVGTITGPKDTVYEGLKYKL--SLSFPNNYPYKPPTVKFL-TP--C 101 (175)
T ss_pred HHHHHHHHhcCCCCcc------cCcCcC--ceeEEeeEeeCCCCccccCcEEEE--EEecCCCCCCCCCeeEee-cc--c
Confidence 4677777653 33332 245553 899999988 57899999998 888999999999999774 43 2
Q ss_pred ecCCCCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489 117 IKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 117 I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
. |++||-+|.||+.+|+ .|.. -+|+..++.+++.++|+
T Consensus 102 ~---HPNVD~~GnIcLDILkdKWSa-~YdVrTILLSiQSLLGE 140 (175)
T KOG0421|consen 102 F---HPNVDLSGNICLDILKDKWSA-VYDVRTILLSIQSLLGE 140 (175)
T ss_pred c---CCCccccccchHHHHHHHHHH-HHhHHHHHHHHHHHhCC
Confidence 2 9999999999999999 8986 78999999999998885
No 10
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=3.8e-08 Score=84.31 Aligned_cols=78 Identities=23% Similarity=0.458 Sum_probs=69.1
Q ss_pred EEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-cccCCCCCHHHHHH
Q 039489 72 LLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVR 150 (304)
Q Consensus 72 LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~ 150 (304)
-..+.|.--..|.|.+|.+ .|.||++||+.||.|.+. |. +. |++||.+|+||+.+|. +|.+ ..+|..++.
T Consensus 34 ~a~I~GP~~SpYEgG~F~l--~I~~p~~YP~~PPkV~F~-Tk--Iy---HPNI~~~G~IclDILk~~WsP-Al~i~~Vll 104 (148)
T KOG0417|consen 34 QATILGPPGSPYEGGVFFL--EIHFPEDYPFKPPKVRFL-TK--IY---HPNIDSNGRICLDILKDQWSP-ALTISKVLL 104 (148)
T ss_pred EEEEECCCCCCcCCCEEEE--EEECCCCCCCCCCceEee-cc--cc---cCCcCccccchHHhhhccCCh-hhHHHHHHH
Confidence 3567888889999999998 999999999999999885 65 33 9999999999999999 9997 999999999
Q ss_pred HHHHHhcc
Q 039489 151 ELSACFSR 158 (304)
Q Consensus 151 ~l~~~F~~ 158 (304)
.++.++++
T Consensus 105 sI~sLL~~ 112 (148)
T KOG0417|consen 105 SICSLLSD 112 (148)
T ss_pred HHHHHhcC
Confidence 99997764
No 11
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=98.67 E-value=1.1e-07 Score=80.26 Aligned_cols=102 Identities=20% Similarity=0.327 Sum_probs=72.5
Q ss_pred HHHHHHHHHh-CCCCccccceeecCC-CceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecC
Q 039489 42 RQHLLTLIST-FPSLDPKTATFTHND-GRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKR 119 (304)
Q Consensus 42 ~~dv~~vl~~-yp~L~p~~~~ft~~d-G~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~ 119 (304)
.+|+..+.+. -.++... ..+| .-..--+.+.|----.|+|..|.+ .|.|+.+||++||.|.+. |. .
T Consensus 3 ~~E~~~l~~~~~~~~~~~----~~~~~~~~~w~~~i~gp~~t~y~gg~f~~--~i~~p~~YP~~pP~v~f~-t~-----i 70 (140)
T PF00179_consen 3 QKELKELQKNPPPGISVQ----PSEDDNLFEWHVTIFGPPGTPYEGGIFKF--RISFPPDYPFSPPKVRFL-TP-----I 70 (140)
T ss_dssp HHHHHHHHHSHTTTEEEE----EESTTETTEEEEEEEBETTSTTTTSEEEE--EEEETTTTTTS--EEEES-SS------
T ss_pred HHHHHHHhhCCCCCEEEE----ECCCCChheEEEEEeccCccceecccccc--cccccccccccccccccc-cc-----c
Confidence 4666655443 2223222 2233 444455666776667789988866 999999999999999996 42 2
Q ss_pred CCCcccCCCceeccccc--cccCCCCCHHHHHHHHHHHh
Q 039489 120 PHPHVTPSGLVSIPYLQ--NWIYPSSNLVDLVRELSACF 156 (304)
Q Consensus 120 ~~~~Vd~~G~v~lpyL~--~W~~~~s~L~~Lv~~l~~~F 156 (304)
-|++||.+|+||+..|+ +|++ ..+|..+|..|..+|
T Consensus 71 ~HPni~~~G~icl~~l~~~~W~p-~~~i~~il~~i~~ll 108 (140)
T PF00179_consen 71 FHPNIDENGRICLDILNPESWSP-SYTIESILLSIQSLL 108 (140)
T ss_dssp SBTTB-TTSBBGHGGGTTTTC-T-TSHHHHHHHHHHHHH
T ss_pred ccccccccccchhhhhhcccCCc-ccccccHHHHHHHHH
Confidence 49999999999999999 4887 999999999999999
No 12
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.2e-07 Score=78.13 Aligned_cols=77 Identities=23% Similarity=0.491 Sum_probs=66.2
Q ss_pred EEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-cccCCCCCHHHHHHH
Q 039489 73 LQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRE 151 (304)
Q Consensus 73 L~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~ 151 (304)
..|.|.=-..|.|.+|.+ .|-+.++||..||.|.+. + . .=|++|+++|.+|+.+|+ +|++ .+++..++-.
T Consensus 38 a~I~Gp~~tp~e~gtFkL--tl~FteeYpnkPP~VrFv-s-~----mFHPNvya~G~iClDiLqNrWsp-~Ydva~ILts 108 (152)
T KOG0419|consen 38 AVIFGPQDTPFEGGTFKL--TLEFTEEYPNKPPTVRFV-S-K----MFHPNVYADGSICLDILQNRWSP-TYDVASILTS 108 (152)
T ss_pred eeEEcCCCCCcCCceEEE--EEEcccccCCCCCeeEee-e-e----ccCCCcCCCCcchHHHHhcCCCC-chhHHHHHHH
Confidence 467888888899999998 888999999999999875 2 1 239999999999999999 8986 9999999988
Q ss_pred HHHHhcc
Q 039489 152 LSACFSR 158 (304)
Q Consensus 152 l~~~F~~ 158 (304)
++.+++.
T Consensus 109 iQslL~d 115 (152)
T KOG0419|consen 109 IQSLLND 115 (152)
T ss_pred HHHHhcC
Confidence 8887753
No 13
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=9.2e-07 Score=75.03 Aligned_cols=79 Identities=28% Similarity=0.506 Sum_probs=64.7
Q ss_pred eeEEEEEecc---cccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc--cccCCCCC
Q 039489 70 VNLLQADGTV---PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ--NWIYPSSN 144 (304)
Q Consensus 70 ~~LL~L~GtI---Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~--~W~~~~s~ 144 (304)
.+|+.-+|-| -..|+...|+| .|-+|-+|||.||.+-+. | |+. |++||..|.||+|+|. +|.+ ...
T Consensus 30 ~nll~wt~llipd~ppY~kgaF~l--~I~fp~eYPFKPP~i~f~-t--kiY---HpNVDe~gqvClPiis~EnWkP-~T~ 100 (153)
T KOG0422|consen 30 ANLLKWTGLLIPDKPPYNKGAFRL--EIDFPVEYPFKPPKIKFK-T--KIY---HPNVDEKGQVCLPIISAENWKP-ATR 100 (153)
T ss_pred ccceeEEeEecCCCCCccCcceEE--EeeCCCCCCCCCCeeeee-e--eec---cCCCCCCCceeeeeeecccccC-ccc
Confidence 4777777766 34566667776 899999999999999886 3 444 9999999999999998 9997 778
Q ss_pred HHHHHHHHHHHhc
Q 039489 145 LVDLVRELSACFS 157 (304)
Q Consensus 145 L~~Lv~~l~~~F~ 157 (304)
.-++++.|+.+..
T Consensus 101 teqVlqaLi~liN 113 (153)
T KOG0422|consen 101 TEQVLQALIALIN 113 (153)
T ss_pred HHHHHHHHHHHhc
Confidence 8888888888654
No 14
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=7.1e-06 Score=70.05 Aligned_cols=86 Identities=26% Similarity=0.578 Sum_probs=69.4
Q ss_pred eecCCCceeeEEEEEeccc----ccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-
Q 039489 62 FTHNDGRSVNLLQADGTVP----MPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ- 136 (304)
Q Consensus 62 ft~~dG~~~~LL~L~GtIP----i~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~- 136 (304)
-.+.|| +.+|.+-..+|| -.|.|.-|.| .+-++++||..||.|-+.+.- -|++|+++|.|||.+|.
T Consensus 29 ~~~~dg-~~nl~~Wec~IPG~~~t~wEGg~y~l--~v~F~~dyP~~PPkckF~~pl------~HPNVypsgtVcLsiL~e 99 (158)
T KOG0424|consen 29 VKNADG-TLNLMNWECGIPGKKGTPWEGGLYKL--TVNFPDDYPSSPPKCKFKPPL------FHPNVYPSGTVCLSILNE 99 (158)
T ss_pred cCCCCC-cceeEEEEeecCCCCCCcCcCceEEE--EEeCCccCCCCCCccccCCCC------cCCCcCCCCcEehhhhcc
Confidence 345677 478888888887 4566666765 888999999999999997552 39999999999999998
Q ss_pred --cccCCCCCHHHHHHHHHHHhc
Q 039489 137 --NWIYPSSNLVDLVRELSACFS 157 (304)
Q Consensus 137 --~W~~~~s~L~~Lv~~l~~~F~ 157 (304)
.|.+ .-+|-.++..+++++.
T Consensus 100 ~~~W~p-aitikqiL~gIqdLL~ 121 (158)
T KOG0424|consen 100 EKDWRP-AITIKQILLGIQDLLD 121 (158)
T ss_pred ccCCCc-hhhHHHHHHHHHHHhc
Confidence 3986 7788888888888664
No 15
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=7.1e-06 Score=71.89 Aligned_cols=96 Identities=24% Similarity=0.373 Sum_probs=70.3
Q ss_pred CCccccceeecCCCceeeEEEEEecc---cccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCce
Q 039489 54 SLDPKTATFTHNDGRSVNLLQADGTV---PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLV 130 (304)
Q Consensus 54 ~L~p~~~~ft~~dG~~~~LL~L~GtI---Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v 130 (304)
+|.+.+..-..+.+-..+-++++=|| -=.|+|..+.+ .|-++..||+.||.|-+. | ++. |++||-+|.|
T Consensus 41 nLp~t~~~s~~~~~~d~~~~~~elti~PdEGyY~gGkf~F--~~~v~~~Yp~~PPKVkCl-t--kV~---HPNId~~GnV 112 (184)
T KOG0420|consen 41 NLPPTCSLSFPDSPDDLNNLEFELTITPDEGYYQGGKFRF--KFKVPNAYPHEPPKVKCL-T--KVY---HPNIDLDGNV 112 (184)
T ss_pred cCCCccccccccCCcccccceEEEEEccCcceecCceEEE--EEECCCCCCCCCCeeeee-e--ccc---cCCcCCcchH
Confidence 35444433222223333333565555 12477777776 789999999999999774 4 243 9999999999
Q ss_pred eccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489 131 SIPYLQ-NWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 131 ~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
|+-+|+ +|.+ .-||-++|--|..+|-+
T Consensus 113 CLnILRedW~P-~lnL~sIi~GL~~LF~e 140 (184)
T KOG0420|consen 113 CLNILREDWRP-VLNLNSIIYGLQFLFLE 140 (184)
T ss_pred HHHHHHhcCcc-ccchHHHHHHHHHHhcc
Confidence 999999 8997 88999999999999875
No 16
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=1.5e-05 Score=69.74 Aligned_cols=97 Identities=22% Similarity=0.430 Sum_probs=76.7
Q ss_pred HHHHHHHHHHh-CCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecC
Q 039489 41 IRQHLLTLIST-FPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKR 119 (304)
Q Consensus 41 v~~dv~~vl~~-yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~ 119 (304)
+-.||..++.. |. +=+.|||-++-.+++.|.---.|.|..+.| .+-||++||+..|-|=+. + +|
T Consensus 8 id~Dv~KL~~s~ye-------V~~ind~m~ef~V~f~GP~ds~YegGvWkv--~V~lPd~YP~KSPSIGFv-n---KI-- 72 (189)
T KOG0416|consen 8 IDTDVMKLLMSDYE-------VTIINDGMQEFYVKFHGPKDSPYEGGVWKV--RVELPDNYPFKSPSIGFV-N---KI-- 72 (189)
T ss_pred hhhHHHHHHhcCCe-------EEEecCcccEEEEEeeCCCCCcccCceEEE--EEECCCCCCCCCCcccce-e---ec--
Confidence 55899999875 42 335678899999999999999999999998 789999999998877443 2 22
Q ss_pred CCCcccC-CCceeccccc-cccCCCCCHHHHHHHHH
Q 039489 120 PHPHVTP-SGLVSIPYLQ-NWIYPSSNLVDLVRELS 153 (304)
Q Consensus 120 ~~~~Vd~-~G~v~lpyL~-~W~~~~s~L~~Lv~~l~ 153 (304)
-|++||. +|.||+..|+ .|.+ -.+|+.+++.+.
T Consensus 73 fHPNIDe~SGsVCLDViNQtWSp-~yDL~NIfetfL 107 (189)
T KOG0416|consen 73 FHPNIDEASGSVCLDVINQTWSP-LYDLVNIFETFL 107 (189)
T ss_pred cCCCchhccCccHHHHHhhhhhH-HHHHHHHHHHHh
Confidence 4999986 9999999998 7885 556666555544
No 17
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=8e-05 Score=66.24 Aligned_cols=86 Identities=27% Similarity=0.437 Sum_probs=65.7
Q ss_pred CCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccC-CCceeccccc-cccCCC
Q 039489 65 NDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTP-SGLVSIPYLQ-NWIYPS 142 (304)
Q Consensus 65 ~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~-~G~v~lpyL~-~W~~~~ 142 (304)
|+.-...--.+.|..-..|.|.+|-| .|-+|++||+.||-|-+. |. + =|++|.+ .|.||+++|. +|.. +
T Consensus 32 n~~~~~ikG~I~GP~~TPYEGG~Fel--dI~iPe~YPF~pPkv~F~-Tk--I---wHPnVSs~tGaICLDilkd~Wa~-s 102 (200)
T KOG0418|consen 32 NENLKEIKGHIAGPEDTPYEGGVFEL--DIKIPENYPFKPPKVKFI-TK--I---WHPNVSSQTGAICLDILKDQWAA-S 102 (200)
T ss_pred cCChhhceeEecCCCCCCCCCceEEE--EEecCCCCCCCCCceeee-ee--e---ecCCCCcccccchhhhhhcccch-h
Confidence 33333444556666678999999998 788999999999999775 32 2 3888866 8999999998 8986 7
Q ss_pred CCHHHHHHHHHHHhccC
Q 039489 143 SNLVDLVRELSACFSRE 159 (304)
Q Consensus 143 s~L~~Lv~~l~~~F~~~ 159 (304)
-+|..++-+|+..++.-
T Consensus 103 lTlrtvLislQalL~~p 119 (200)
T KOG0418|consen 103 LTLRTVLISLQALLCAP 119 (200)
T ss_pred hhHHHHHHHHHHHHcCC
Confidence 78888887877766543
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0011 Score=56.14 Aligned_cols=103 Identities=17% Similarity=0.325 Sum_probs=73.2
Q ss_pred HHHHHHHHhCC-CCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCC
Q 039489 43 QHLLTLISTFP-SLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPH 121 (304)
Q Consensus 43 ~dv~~vl~~yp-~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~ 121 (304)
+++..+-..=| +|+-++ .|.-.+=.+-+.|.-..-|.|.+|.+ .+-+++.||++.|-|.+.-. | +.|
T Consensus 22 KEl~e~q~~pP~G~~~~v-----~dnlqqWii~v~Ga~GTLYa~e~~qL--q~~F~~~YP~esPqVmF~~~----~-P~H 89 (161)
T KOG0427|consen 22 KELSEWQNNPPTGFKHRV-----TDNLQQWIIEVTGAPGTLYANETYQL--QVEFPEHYPMESPQVMFVGP----A-PLH 89 (161)
T ss_pred HHHHHHhcCCCCcceeec-----ccchheeEEEEecCCceeecCcEEEE--EEecCCCCCCCCCeEEEecC----C-CCC
Confidence 55555533332 354442 25555666777777777799999998 77899999999887655311 2 569
Q ss_pred CcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489 122 PHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 122 ~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
+||.+||-|||.+|- +|.+ .-.+..++..+...++.
T Consensus 90 PHiYSNGHICL~iL~d~WsP-Amsv~SvClSIlSMLSS 126 (161)
T KOG0427|consen 90 PHIYSNGHICLDILYDSWSP-AMSVQSVCLSILSMLSS 126 (161)
T ss_pred CceecCCeEEEEeecccCCc-chhhHHHHHHHHHHHcc
Confidence 999999999999997 9997 66666666666665553
No 19
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00044 Score=59.98 Aligned_cols=75 Identities=20% Similarity=0.402 Sum_probs=57.5
Q ss_pred EEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc--------------cc
Q 039489 73 LQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ--------------NW 138 (304)
Q Consensus 73 L~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~--------------~W 138 (304)
+.+.|.=-.-|.|.-|+- .+-+|.+||++||.+.+. ..|- |++|+.+|+||+-+|| +|
T Consensus 40 V~i~gppdTlYeGG~FkA--~m~FP~dYP~sPP~~rF~--s~mw----HPNvy~~G~vCISILH~pgdD~~gyE~~~erW 111 (171)
T KOG0425|consen 40 VAIIGPPDTLYEGGFFKA--HMKFPQDYPLSPPTFRFT--SKMW----HPNVYEDGDVCISILHPPGDDPSGYELPSERW 111 (171)
T ss_pred EEEEcCCCccccCceeEE--EEeCcccCCCCCCceeee--hhhc----CCCcCCCCCEEEEeecCCCCCcccCCChhhcc
Confidence 456676667799988887 788999999999999884 3343 9999999999999987 35
Q ss_pred cCCCCCHHHHHHHHHHHh
Q 039489 139 IYPSSNLVDLVRELSACF 156 (304)
Q Consensus 139 ~~~~s~L~~Lv~~l~~~F 156 (304)
.+ ..++-.++-+++..+
T Consensus 112 ~P-v~tvetIllSiIsmL 128 (171)
T KOG0425|consen 112 LP-VQTVETILLSIISML 128 (171)
T ss_pred CC-ccchhHhHHHHHHHH
Confidence 54 556666666666544
No 20
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0064 Score=66.04 Aligned_cols=86 Identities=21% Similarity=0.450 Sum_probs=70.7
Q ss_pred EEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccccccC-------CCCCHH
Q 039489 74 QADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIY-------PSSNLV 146 (304)
Q Consensus 74 ~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~~W~~-------~~s~L~ 146 (304)
.|.|.--..|++.-|-+ .|.||.+||..||+|+.. +-+|.+ +++...+|+||+-.|..|.- ++|+++
T Consensus 886 ~~~g~~~tpy~~~~f~f--d~~~~~~yp~~pp~~~~~-s~~~r~---npnly~~g~vc~s~l~tw~g~~~e~w~~~s~~l 959 (1101)
T KOG0895|consen 886 VIVGAAGTPYQDGLFFF--DFQFPQDYPSSPPLVHYH-SGGVRL---NPNLYEDGKVCLSLLNTWHGRGNEVWNPSSSIL 959 (1101)
T ss_pred HhhCCCCCccccceEEE--EeecCCCCCCCCCceEee-cCceee---CcccccccceehhhhccccCCCccccCcchhHH
Confidence 45677666777776655 889999999999999997 555776 78899999999999998862 378899
Q ss_pred HHHHHHHHHhccCCCCCCC
Q 039489 147 DLVRELSACFSREPPLYSQ 165 (304)
Q Consensus 147 ~Lv~~l~~~F~~~pPl~~~ 165 (304)
.++-.++.+.-.+-|-|.-
T Consensus 960 q~l~s~q~l~l~~~py~ne 978 (1101)
T KOG0895|consen 960 QVLVSIQGLVLNEEPYFNE 978 (1101)
T ss_pred HHHHHhhhhhcccccccCc
Confidence 9999999888888888774
No 21
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0037 Score=52.96 Aligned_cols=55 Identities=29% Similarity=0.513 Sum_probs=45.7
Q ss_pred EEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceecccccc
Q 039489 75 ADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQN 137 (304)
Q Consensus 75 L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~~ 137 (304)
++|.--..|.|..|+- .+-+|.+||.+||...+ |.+|- |++|.++|+||+-+||.
T Consensus 41 I~GP~~T~f~~GvfpA--~l~FP~DYPLsPPkm~F--tc~~f----HPNiy~dG~VCISILHa 95 (165)
T KOG0426|consen 41 IQGPEDTCFEGGVFPA--RLSFPLDYPLSPPKMRF--TCEMF----HPNIYPDGRVCISILHA 95 (165)
T ss_pred eeCCCCCcccCCccce--eeecCCCCCCCCCceee--ecccc----cCcccCCCeEEEEEeeC
Confidence 5777777888887755 88999999999999877 44444 99999999999999873
No 22
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=96.48 E-value=0.0083 Score=50.59 Aligned_cols=67 Identities=19% Similarity=0.391 Sum_probs=48.9
Q ss_pred ccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceec---cc-cccccCCCCCHHHHHHHHHHHhc
Q 039489 87 TYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSI---PY-LQNWIYPSSNLVDLVRELSACFS 157 (304)
Q Consensus 87 ~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~l---py-L~~W~~~~s~L~~Lv~~l~~~F~ 157 (304)
.-.++|.|-++..||..||.||+.-.. .+ .--+||+.+|.+|+ -+ ++.|++ ...+.++++....+..
T Consensus 35 ~~~~~l~l~~p~~FP~~pp~v~l~d~~--~~-~~~pHv~~~G~LCl~~~~~~~D~~~P-~~~~~~~l~~a~~lL~ 105 (133)
T PF14461_consen 35 GGPFPLRLVFPDDFPYLPPRVYLEDPK--QF-PLLPHVESDGKLCLLDEELVLDPWDP-EGIIADCLERAIRLLE 105 (133)
T ss_pred CeEEEEEEEECCcccCcCCEEEecCcc--cc-CccCeEcCCCeEEEecCCcccCccCH-HHHHHHHHHHHHHHHH
Confidence 446788999999999999999997322 11 13689999999886 33 446665 6677777777666655
No 23
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.0056 Score=54.03 Aligned_cols=60 Identities=27% Similarity=0.572 Sum_probs=51.1
Q ss_pred EEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-cccC
Q 039489 73 LQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-NWIY 140 (304)
Q Consensus 73 L~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-~W~~ 140 (304)
..|+|.....|.|.-|.+ .+-|-++||.+||--|+. |. + -|++|.+||.||.--|. +|++
T Consensus 44 a~IeGP~GTPYa~GlFRm--KL~L~kDFP~sPPKgYFl-TK--I---FHPNVaaNGEICVNtLKkDW~p 104 (223)
T KOG0423|consen 44 ADIEGPVGTPYANGLFRM--KLALSKDFPHSPPKGYFL-TK--I---FHPNVAANGEICVNTLKKDWNP 104 (223)
T ss_pred hhccCCCCCccccceeee--hhhhcCCCCCCCCcceee-ee--e---ccCCcccCceehhhhhhcccCc
Confidence 457888888898888887 778999999999999984 43 3 39999999999988888 9996
No 24
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.56 E-value=0.081 Score=48.22 Aligned_cols=63 Identities=10% Similarity=0.115 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFS-------TQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~-------~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
+.+-.+.++.+++++..+.+++..++.. .-++|+++.++|++.+..++.|.++|+.+++.+..
T Consensus 98 le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 98 LENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555554443333332222 22456666666666666666666666666655544
No 25
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.30 E-value=0.28 Score=37.48 Aligned_cols=63 Identities=22% Similarity=0.319 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039489 238 KLVEMVHADITGMRKAREV---EVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNS 300 (304)
Q Consensus 238 al~dkl~~el~~l~~t~~a---e~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~ 300 (304)
+++++|..+++.+.+|... |++.|..-..+|+.+.+.|......|+++++.+..+|..|..+-
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666777777666665544 45555555578888999999999999999999999999887664
No 26
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.50 E-value=0.55 Score=39.52 Aligned_cols=64 Identities=17% Similarity=0.306 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 235 AVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 235 ~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
.+++-.+.++.++..++...+.-...|...+.....++..|++.|..++...++|..+...|-+
T Consensus 63 ~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~ 126 (132)
T PF07926_consen 63 QLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHD 126 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444445555555555555555555555554444433
No 27
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.57 E-value=1.4 Score=37.08 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDIL 303 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~ 303 (304)
..+...+++.++..+.................|...+..++..-..|+++..++++++..|...+.+|
T Consensus 57 ~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lL 124 (132)
T PF07926_consen 57 DIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLL 124 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455678888888888888888888888899999999999999999999999999999998887765
No 28
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=93.44 E-value=0.57 Score=38.46 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=15.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 253 AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 253 t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
+.+.++|+..--+.+|.+.++.|+..+..|+.+.+.+.+++
T Consensus 20 ~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~ 60 (107)
T PF09304_consen 20 SLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRI 60 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 29
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=92.98 E-value=0.85 Score=43.58 Aligned_cols=69 Identities=23% Similarity=0.277 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039489 227 QTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNS 300 (304)
Q Consensus 227 a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~ 300 (304)
..+-.+|.+.+... -...-|++..+|+|++..--..|.+|.++|++-+.+|++|...|.+.|....++.
T Consensus 224 ~~~~~~rkr~qnk~-----AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~~r 292 (294)
T KOG4571|consen 224 PEKKLRRKRQQNKA-----AATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYKKR 292 (294)
T ss_pred chHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444555444443 2233345566677777666677777777888888888888888888777665543
No 30
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=92.55 E-value=0.53 Score=40.14 Aligned_cols=101 Identities=24% Similarity=0.340 Sum_probs=73.1
Q ss_pred HHHHHHh-CCCCccccceeecCCCceeeEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCceecC
Q 039489 45 LLTLIST-FPSLDPKTATFTHNDGRSVNLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKR 119 (304)
Q Consensus 45 v~~vl~~-yp~L~p~~~~ft~~dG~~~~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~ 119 (304)
++..|.. -+.+.+.+..|-.+|..--.|..=.|+| .-.|.|..|++ .|---.+||..||.|++. + .|
T Consensus 10 lleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysL--KI~Cgp~YPe~PP~vrf~-t---ki-- 81 (138)
T KOG0896|consen 10 LLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSL--KIECGPKYPELPPTVRFG-T---KI-- 81 (138)
T ss_pred hhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeE--EEecCCCCCCCCceeEEE-E---Ee--
Confidence 3334443 5678888888998888877888777777 78899999998 777889999999999974 2 22
Q ss_pred CCCcccCCC-ce---eccccccccCCCCCHHHHHHHHHH
Q 039489 120 PHPHVTPSG-LV---SIPYLQNWIYPSSNLVDLVRELSA 154 (304)
Q Consensus 120 ~~~~Vd~~G-~v---~lpyL~~W~~~~s~L~~Lv~~l~~ 154 (304)
+=+.|+.++ .| .+..|.+|.. .+++-.++..+..
T Consensus 82 nm~gvn~~~g~Vd~~~i~~L~~W~~-~y~~~~vl~~lr~ 119 (138)
T KOG0896|consen 82 NMNGVNSSNGVVDPRDITVLARWQR-SYSIKMVLGQLRK 119 (138)
T ss_pred eecccccCCCccCccccchhhcccc-cchhhHHHHhhhH
Confidence 223444444 33 3678999996 6777777777664
No 31
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=92.44 E-value=1.2 Score=41.56 Aligned_cols=45 Identities=27% Similarity=0.274 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 250 MRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 250 l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
-.+..+.|.|.|++....|-...++++.-++.+.+|..+++++.+
T Consensus 105 en~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~ 149 (292)
T KOG4005|consen 105 ENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQ 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHH
Confidence 334445555555555566666677777777778888888777665
No 32
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=92.35 E-value=1.3 Score=39.09 Aligned_cols=55 Identities=13% Similarity=0.115 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEGLFS-TQALLRRREEEIDRGLKELQDEREG 288 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~-~q~eL~~~~~~l~~~I~~L~~E~~e 288 (304)
+.+.+..++|++|++.++....+|++.+.. ++-++..++.++.+....++.+..+
T Consensus 76 ~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e 131 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQE 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345556666777777777766666666655 2233333333333333333333333
No 33
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=92.18 E-value=1.4 Score=38.39 Aligned_cols=64 Identities=20% Similarity=0.294 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSD 301 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~ 301 (304)
|+.-...++.++.++......+...|..+.+.+.. ++|...|..|+.|.++|+..|+.|...+.
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~--~el~~~i~~l~~e~~~l~~kL~~l~~~~~ 140 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTN--EELREEIEELEEEIEELEEKLEKLRSGSK 140 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33334555555555555555555555555433322 24777777888888888888877776543
No 34
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.09 E-value=1.4 Score=44.41 Aligned_cols=62 Identities=13% Similarity=0.161 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 238 KLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 238 al~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
...++++.|+++++...+.+++++.--...|++.++..++.+..++.+..+|+++|.+|+.-
T Consensus 389 ~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~ 450 (493)
T KOG0804|consen 389 TKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFF 450 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhee
Confidence 34444555666666566666666666668888888888888888888999999988887643
No 35
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=91.60 E-value=1.6 Score=32.37 Aligned_cols=45 Identities=22% Similarity=0.312 Sum_probs=20.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 039489 252 KAREVEVEGLFSTQALLRRREE---EIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 252 ~t~~ae~e~l~~~q~eL~~~~~---~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
...++||.+...++.||++-+. ..++-|++-+....+|+..|..|
T Consensus 4 saL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L 51 (61)
T PF08826_consen 4 SALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERL 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555544332 33333444444444444444444
No 36
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.47 E-value=0.9 Score=41.77 Aligned_cols=79 Identities=16% Similarity=0.196 Sum_probs=54.9
Q ss_pred CCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc----cccCC
Q 039489 66 DGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ----NWIYP 141 (304)
Q Consensus 66 dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~----~W~~~ 141 (304)
|..-+-=-||.|.--..|.|.-|+= .|-+|.+||+.||-|+.. |+ ++++. .|-|+||-+-+ .|++.
T Consensus 32 ~nILEWHYvl~GpedTPy~GG~YhG--kl~FP~eyP~KPPaI~Mi-TP------NGRFk-tntRLCLSiSDfHPdsWNP~ 101 (244)
T KOG0894|consen 32 NNILEWHYVLRGPEDTPYYGGYYHG--KLIFPPEYPFKPPAITMI-TP------NGRFK-TNTRLCLSISDFHPDSWNPG 101 (244)
T ss_pred cceeeeEEEeeCCCCCCccCceeee--EEeCCCCCCCCCCeeEEE-CC------CCcee-cCceEEEeccccCcCcCCCc
Confidence 3333444689999999999999987 778999999999999874 43 35553 36677765543 89974
Q ss_pred CC---CHHHHHHHHHH
Q 039489 142 SS---NLVDLVRELSA 154 (304)
Q Consensus 142 ~s---~L~~Lv~~l~~ 154 (304)
-| =|.+|+.-|.+
T Consensus 102 WsVStILtGLlSFM~e 117 (244)
T KOG0894|consen 102 WSVSTILTGLLSFMTE 117 (244)
T ss_pred ccHHHHHHHHHHHHhc
Confidence 32 34555554443
No 37
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.47 E-value=1.6 Score=39.78 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 039489 238 KLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDIL 303 (304)
Q Consensus 238 al~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~ 303 (304)
....+++.++++++++..+.........++|.+.-++.++.+.+|+.|.++|.++++.+..+.|.|
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777777776666666666666677777777777777778888888888887777666554
No 38
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=91.21 E-value=0.82 Score=48.35 Aligned_cols=55 Identities=20% Similarity=0.377 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 039489 242 MVHADITGMRKAREVEVEGLFSTQALLRRREE----EIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 242 kl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~----~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
+||++|+.|.++.++|.+.+....++|++.++ +|+..|++||||++=|.-++..+
T Consensus 1 mLRdkL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~ 59 (654)
T PF09798_consen 1 MLRDKLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSL 59 (654)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999988887765 78899999999999887776655
No 39
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=91.13 E-value=3.3 Score=34.96 Aligned_cols=65 Identities=18% Similarity=0.263 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEGLF--------------------------STQALLRRREEEIDRGLKELQDERE 287 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~l~--------------------------~~q~eL~~~~~~l~~~I~~L~~E~~ 287 (304)
+++..-.+.+.+|++..+...+.+-|+.. ++|..|++-++.+++.|+.|+.+.+
T Consensus 26 srl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e 105 (131)
T KOG1760|consen 26 SRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELE 105 (131)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566778888888887777666544 3668888888999999999999999
Q ss_pred HHHHHHHHHhh
Q 039489 288 GLEQQLQIVLM 298 (304)
Q Consensus 288 eLe~~l~~l~~ 298 (304)
..+.+++.|..
T Consensus 106 ~I~~~m~~LK~ 116 (131)
T KOG1760|consen 106 SISARMDELKK 116 (131)
T ss_pred HHHHHHHHHHH
Confidence 88888887754
No 40
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=91.10 E-value=1.6 Score=40.51 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=8.9
Q ss_pred CcccceeEEEeecc
Q 039489 85 GVTYNIPVIIWLME 98 (304)
Q Consensus 85 g~~ynIPi~Iwlp~ 98 (304)
|..|||-|.=.+|.
T Consensus 32 G~eYnITisSIiPT 45 (290)
T COG4026 32 GSEYNITISSIIPT 45 (290)
T ss_pred cccceeEEEeeccC
Confidence 67888876644443
No 41
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=90.67 E-value=0.83 Score=50.28 Aligned_cols=89 Identities=19% Similarity=0.360 Sum_probs=70.3
Q ss_pred EEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccccccC--------CCCCH
Q 039489 74 QADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIY--------PSSNL 145 (304)
Q Consensus 74 ~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~~W~~--------~~s~L 145 (304)
.+.|+--..|.+..|- +.|.+|..||..||.|-..-+.+-.+ .++-..+|+|++-.|-.|.. ..+.|
T Consensus 317 lIig~~gtPy~~glf~--Fdiq~P~~yPa~pp~v~~lt~~~~R~---nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl 391 (1101)
T KOG0895|consen 317 LIIGPDGTPYADGLFL--FDIQFPDTYPAVPPHVKYLTGGGVRL---NPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSL 391 (1101)
T ss_pred EEecCCCCCCcCCcee--eEeecCCCCCCCCceeEEeeccceee---cCCcccCceEEeeeeeecccccccCCCccccch
Confidence 4667777777777766 69999999999999998874545555 45556699999988866653 35899
Q ss_pred HHHHHHHHHHhccCCCCCCCCC
Q 039489 146 VDLVRELSACFSREPPLYSQRR 167 (304)
Q Consensus 146 ~~Lv~~l~~~F~~~pPl~~~~~ 167 (304)
..++..++.+-+.+.|-+..+.
T Consensus 392 ~qvL~sIQ~Li~~e~Py~ne~g 413 (1101)
T KOG0895|consen 392 LQVLESIQGLILNEEPYFNEPG 413 (1101)
T ss_pred hhhhhhhhhhhcccCccccccc
Confidence 9999999999999988887653
No 42
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=90.58 E-value=2.4 Score=35.82 Aligned_cols=50 Identities=8% Similarity=0.136 Sum_probs=28.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 039489 253 AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDI 302 (304)
Q Consensus 253 t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~ 302 (304)
...+-+|...++++..+++-.++.+.+..+..+.+.++..++.|+.+-+-
T Consensus 72 ~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 72 RVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555566666666667777777777666665443
No 43
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.13 E-value=3.6 Score=38.12 Aligned_cols=67 Identities=27% Similarity=0.336 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH------HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 232 KRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQAL------LR----RREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~e------L~----~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
+++.++.+.+.++ .+.......+.+.+.+.+++.| |. .++..++..|..++.|.+.|++++|.+...
T Consensus 39 r~~~~nS~~efar-~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE 115 (246)
T KOG4657|consen 39 RRRSMNSLVEFAR-ALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEE 115 (246)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555 3333333333333444444422 22 233355666677777777777777777543
No 44
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=89.62 E-value=5.6 Score=36.83 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 248 TGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 248 ~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
.+.+....++++.+.+--+.|+...+++++.+..++++.++|+++++.+.
T Consensus 48 ~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 48 DDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444466666677777777777777777777776653
No 45
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=89.13 E-value=6.7 Score=30.56 Aligned_cols=36 Identities=22% Similarity=0.439 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSD 301 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~ 301 (304)
++++.+++.|..-...|++|...++.+|..|..+-|
T Consensus 42 ~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 42 QNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445556777888888899999999999988877654
No 46
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=89.00 E-value=2.8 Score=41.01 Aligned_cols=61 Identities=15% Similarity=0.252 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
|.+-.+.-+.|.++|+.+.+.++..|++.+ .+.+.+.++|+.-|..+++|...|+-.++.+
T Consensus 90 i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l 153 (401)
T PF06785_consen 90 IRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDAL 153 (401)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 444455566788888888888888888877 4445556677777777777777766666655
No 47
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=88.72 E-value=6.5 Score=36.60 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHH
Q 039489 227 QTEVFKRNAVNKL 239 (304)
Q Consensus 227 a~E~~r~s~lsal 239 (304)
..|-+|+.+-+|+
T Consensus 104 D~elvrkEl~nAl 116 (290)
T COG4026 104 DVELVRKELKNAL 116 (290)
T ss_pred CHHHHHHHHHHHH
Confidence 4455555544444
No 48
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=88.49 E-value=5.3 Score=37.72 Aligned_cols=57 Identities=18% Similarity=0.304 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 238 KLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 238 al~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
...+.++.++..+..+...+-+.+..++.++....+..+..|..|+.|..+|...++
T Consensus 223 ~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~ 279 (312)
T PF00038_consen 223 RQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMA 279 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 334455555555555666666666666666666666666666666666666665554
No 49
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=88.35 E-value=0.83 Score=42.13 Aligned_cols=88 Identities=15% Similarity=0.325 Sum_probs=59.2
Q ss_pred ceeecCCCceeeEEEEEecccc---cccCcccceeEEEeecccCCCC---CCeEEEecCCCceecCCCCcccCCC-cee-
Q 039489 60 ATFTHNDGRSVNLLQADGTVPM---PFQGVTYNIPVIIWLMESYPRH---PPCVYVNPTRDMIIKRPHPHVTPSG-LVS- 131 (304)
Q Consensus 60 ~~ft~~dG~~~~LL~L~GtIPi---~y~g~~ynIPi~Iwlp~~YP~~---pPivyV~pt~~m~I~~~~~~Vd~~G-~v~- 131 (304)
..|....-..+ |.-.|-|=| -|.|..|.+ .|.||++||.. |-+||=. + .+ |++|++.. ...
T Consensus 38 gIyviPSyan~--l~WFGViFvr~GiyaggVFRF--tIliPdnfPdd~dlPrvvF~q---~-vf---HP~icp~skeLdl 106 (258)
T KOG0429|consen 38 GIYVIPSYANK--LLWFGVIFVRKGIYAGGVFRF--TILIPDNFPDDSDLPRVVFEQ---S-VF---HPLICPKSKELDL 106 (258)
T ss_pred ceEEccccccc--ceEEEEEEEecccccCceEEE--EEEcCccCCCcCCCCeEEeec---c-cc---ccccCCCccceeH
Confidence 45655544333 334555533 267777777 88999999943 4444432 2 44 99998844 333
Q ss_pred ccccccccCCCCCHHHHHHHHHHHhcc
Q 039489 132 IPYLQNWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 132 lpyL~~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
.-.+.+|......|..++..|+.+|..
T Consensus 107 ~raf~eWRk~ehhiwqvL~ylqriF~d 133 (258)
T KOG0429|consen 107 NRAFPEWRKEEHHIWQVLVYLQRIFYD 133 (258)
T ss_pred hhhhhhhhccccHHHHHHHHHHHHhcC
Confidence 456778998899999999999999974
No 50
>PRK12704 phosphodiesterase; Provisional
Probab=88.34 E-value=3.9 Score=42.22 Aligned_cols=33 Identities=33% Similarity=0.451 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 261 LFSTQALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 261 l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
+.+.+.+|.++.+.|++-.+.|++++++|++.-
T Consensus 84 L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re 116 (520)
T PRK12704 84 LQKLEKRLLQKEENLDRKLELLEKREEELEKKE 116 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555554444333
No 51
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=88.13 E-value=6.2 Score=36.89 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039489 243 VHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNS 300 (304)
Q Consensus 243 l~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~ 300 (304)
+..+++.+.+...++.+.+.+++..+..-++.++..+..++++..++.+....|..++
T Consensus 115 l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l 172 (239)
T COG1579 115 LMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKL 172 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444444444555555555555555555555555555555555555555554443
No 52
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=87.99 E-value=5.6 Score=35.06 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 039489 281 ELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 281 ~L~~E~~eLe~~l~~l~~~ 299 (304)
+++++..+++..|+.+..+
T Consensus 117 ~~r~e~~~~~~ki~e~~~k 135 (177)
T PF07798_consen 117 RIREEQAKQELKIQELNNK 135 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555433
No 53
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=87.87 E-value=6.4 Score=35.44 Aligned_cols=33 Identities=33% Similarity=0.535 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 263 STQALLRRREEEIDRGLKELQDEREGLEQQLQI 295 (304)
Q Consensus 263 ~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~ 295 (304)
+.+.+|.++++.|++-.+.|+++.++|+..-..
T Consensus 82 ~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~ 114 (201)
T PF12072_consen 82 RLEKRLQQREEQLDRRLEQLEKREEELEKKEEE 114 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566655555555555555555555444
No 54
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=87.83 E-value=0.86 Score=40.30 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 249 GMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 249 ~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
.+-...+..||.--=++.|| ++++.|...+++|+||..+|..++
T Consensus 4 D~EsklN~AIERnalLE~EL-dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 4 DFESKLNQAIERNALLESEL-DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555577777 557778888888888888887777
No 55
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.81 E-value=4.8 Score=38.86 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
.+|+.+.+.++..|++++.++.++..+|+.+.
T Consensus 233 ~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 233 AELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555443
No 56
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=87.77 E-value=7.2 Score=30.29 Aligned_cols=70 Identities=14% Similarity=0.251 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHH---------HHHHHHHHHHHHHHHHHHHHhhccc
Q 039489 233 RNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREE--EID---------RGLKELQDEREGLEQQLQIVLMNSD 301 (304)
Q Consensus 233 ~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~--~l~---------~~I~~L~~E~~eLe~~l~~l~~~~~ 301 (304)
-+.+.-..+++...+++++..+.++.+.+.++..+|++-.+ .+. .-|..++++...+.+.++.+..+++
T Consensus 9 ~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~ 88 (92)
T PF14712_consen 9 LSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRAD 88 (92)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667888888888888888888888888888866555 222 2234566666666666666666554
Q ss_pred c
Q 039489 302 I 302 (304)
Q Consensus 302 ~ 302 (304)
-
T Consensus 89 ~ 89 (92)
T PF14712_consen 89 K 89 (92)
T ss_pred h
Confidence 3
No 57
>PRK00106 hypothetical protein; Provisional
Probab=87.62 E-value=4.7 Score=41.88 Aligned_cols=26 Identities=27% Similarity=0.403 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQ 291 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~ 291 (304)
..|.++++.|++-.+.|++++++|++
T Consensus 104 ~rL~qREE~LekRee~LekrE~eLe~ 129 (535)
T PRK00106 104 SRLTERATSLDRKDENLSSKEKTLES 129 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433333
No 58
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=87.17 E-value=7.2 Score=30.91 Aligned_cols=57 Identities=19% Similarity=0.213 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 243 VHADITGMRKAREVEVEGLFSTQ------ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 243 l~~el~~l~~t~~ae~e~l~~~q------~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
++.|++...+..+........+. .+++.-+.+|...|+.++...++|++.|..++.+
T Consensus 6 v~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~n 68 (97)
T PF09177_consen 6 VKDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKN 68 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44555555555555555555443 5788888999999999999999999999988765
No 59
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=87.14 E-value=2.6 Score=42.98 Aligned_cols=48 Identities=15% Similarity=0.251 Sum_probs=32.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 252 KAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 252 ~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
+..|++++.+++.-++|.+..+++++.|++|+.|.++|+++++.+..+
T Consensus 79 sELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 79 AQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 333444444433334455888888889999999999999888655443
No 60
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=87.07 E-value=3.7 Score=44.40 Aligned_cols=40 Identities=18% Similarity=0.290 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 246 DITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDE 285 (304)
Q Consensus 246 el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E 285 (304)
+|++.+...+++++.+.+...++++.++++++..++|+++
T Consensus 519 ~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~ 558 (771)
T TIGR01069 519 KLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKER 558 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444444443333
No 61
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.04 E-value=3.8 Score=44.16 Aligned_cols=48 Identities=27% Similarity=0.367 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 039489 247 ITGMRKAREVEVEGLFSTQALLRRR-EEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 247 l~~l~~t~~ae~e~l~~~q~eL~~~-~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
.++.-++.+.|++....-|.||++. +++-++.|++++..++|||++-+
T Consensus 362 rqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~ElEkqRq 410 (1118)
T KOG1029|consen 362 RQEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREELEKQRQ 410 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444555543 44667778888888888887643
No 62
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.92 E-value=11 Score=28.95 Aligned_cols=36 Identities=19% Similarity=0.433 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSD 301 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~ 301 (304)
+++....+.|++.-+.|+.|...+..+|..|+.+-|
T Consensus 42 q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkme 77 (79)
T COG3074 42 QNAQHQREALERENEQLKEEQNGWQERLRALLGKME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 444555556666666777777777777777766543
No 63
>PRK10132 hypothetical protein; Provisional
Probab=86.90 E-value=5 Score=33.02 Aligned_cols=61 Identities=16% Similarity=0.147 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFS-TQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~-~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
+.+-.++|+.|++.|.++.++++..... ...++.+=+++++..++..++...+++...+..
T Consensus 10 ~~~q~e~L~~Dl~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~ 71 (108)
T PRK10132 10 VDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMHGRTRVQQAA 71 (108)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4556688999999999999888754443 336677777777777777777666665544333
No 64
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=86.84 E-value=5 Score=32.11 Aligned_cols=33 Identities=27% Similarity=0.496 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
++|..+...+++.|..++.+..+++..+..+..
T Consensus 70 ~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~ 102 (108)
T PF02403_consen 70 EELKAEVKELKEEIKELEEQLKELEEELNELLL 102 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888999999999999999988887754
No 65
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=86.73 E-value=3.7 Score=44.44 Aligned_cols=8 Identities=38% Similarity=0.268 Sum_probs=3.5
Q ss_pred eeEEEeec
Q 039489 90 IPVIIWLM 97 (304)
Q Consensus 90 IPi~Iwlp 97 (304)
||..|-|.
T Consensus 317 Vpndi~l~ 324 (782)
T PRK00409 317 VPKDISLG 324 (782)
T ss_pred ECceeEEC
Confidence 44444443
No 66
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=86.46 E-value=4.6 Score=34.78 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 243 VHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 243 l~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
.++++..+....+.....+..+. .-|+.++..|++++..++.+..+||.....+
T Consensus 50 ~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~ 106 (140)
T PF10473_consen 50 SKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSL 106 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34444444444444444444444 3334555566666666666666666655544
No 67
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=86.44 E-value=8.3 Score=37.35 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 227 QTEVFKRNAVNKLVEMVHADITGM 250 (304)
Q Consensus 227 a~E~~r~s~lsal~dkl~~el~~l 250 (304)
.+|.+..+.|-+-.+.++.+-+.|
T Consensus 73 qEEE~isN~LlKkl~~l~keKe~L 96 (310)
T PF09755_consen 73 QEEEFISNTLLKKLQQLKKEKETL 96 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444454444444
No 68
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=86.34 E-value=6.8 Score=35.09 Aligned_cols=30 Identities=30% Similarity=0.572 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489 272 EEEIDRGLKELQDEREGLEQQLQIVLMNSD 301 (304)
Q Consensus 272 ~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~ 301 (304)
...++.-|..|+.+.++|+..+..+..+.|
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e 151 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCE 151 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555544433
No 69
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=86.32 E-value=2.7 Score=39.46 Aligned_cols=74 Identities=19% Similarity=0.263 Sum_probs=51.8
Q ss_pred eeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceecccc----ccccCCCCCH
Q 039489 70 VNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYL----QNWIYPSSNL 145 (304)
Q Consensus 70 ~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL----~~W~~~~s~L 145 (304)
+--+.+.|+.-..|.|..|+= .|.||-+||+.||-+.+. |++ +++ .-|-+|||-+- ..|.+ +.++
T Consensus 41 EWhFtiRGp~dtdFeGGiYHG--RI~lPadYPmKPPs~iLL-TpN------GRF-E~nkKiCLSISgyHPEtWqP-SWSi 109 (314)
T KOG0428|consen 41 EWHFTIRGPPDTDFEGGIYHG--RIVLPADYPMKPPSIILL-TPN------GRF-EVNKKICLSISGYHPETWQP-SWSI 109 (314)
T ss_pred eEEEEeeCCCCCCccCceeee--eEecCCCCCCCCCeEEEE-cCC------Cce-eeCceEEEEecCCCccccCc-chhH
Confidence 344789999999999999997 789999999999987663 543 332 44556665432 26775 5566
Q ss_pred HHHHHHHHH
Q 039489 146 VDLVRELSA 154 (304)
Q Consensus 146 ~~Lv~~l~~ 154 (304)
...+-.|+.
T Consensus 110 RTALlAlIg 118 (314)
T KOG0428|consen 110 RTALLALIG 118 (314)
T ss_pred HHHHHHHHc
Confidence 555555554
No 70
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=86.08 E-value=6.1 Score=40.31 Aligned_cols=32 Identities=16% Similarity=0.395 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
+.|...+.++++..+.|++|+..++..|+.|.
T Consensus 105 ~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 105 QAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555553
No 71
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=85.85 E-value=11 Score=28.75 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
..|+....++++.+..|..+.++++..++.+..
T Consensus 36 KKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 36 KKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555565666665555555544
No 72
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=85.82 E-value=13 Score=35.61 Aligned_cols=48 Identities=19% Similarity=0.197 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 243 VHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 243 l~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
.|.+-++-+.....|.++|.+..++||.+-..+++.|+.|++-..|.-
T Consensus 242 YRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 242 YRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555667888999999999999999999999998776654
No 73
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=85.58 E-value=6.7 Score=37.00 Aligned_cols=30 Identities=10% Similarity=0.272 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFSTQ 265 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~~q 265 (304)
|++....++++-+.+.+...+++++.++.+
T Consensus 167 L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k 196 (312)
T PF00038_consen 167 LSAALREIRAQYEEIAQKNREELEEWYQSK 196 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhhhhhhhhhhcccc
Confidence 444444444444444444455555544444
No 74
>PRK12705 hypothetical protein; Provisional
Probab=85.38 E-value=7.3 Score=40.24 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 264 TQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 264 ~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
.+.+|.++++.|++-.+.|+++.++|++.-+.+
T Consensus 82 ~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l 114 (508)
T PRK12705 82 EEERLVQKEEQLDARAEKLDNLENQLEEREKAL 114 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666555555444433
No 75
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=85.35 E-value=7.5 Score=35.80 Aligned_cols=13 Identities=0% Similarity=-0.194 Sum_probs=7.4
Q ss_pred ChHHHHHHHHHHH
Q 039489 226 DQTEVFKRNAVNK 238 (304)
Q Consensus 226 ~a~E~~r~s~lsa 238 (304)
.+..|..+.+..+
T Consensus 84 ~a~~~~~~~l~ra 96 (216)
T KOG1962|consen 84 LARTHLLEALFRA 96 (216)
T ss_pred HHHHHHHHHHHHH
Confidence 4556665555555
No 76
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.31 E-value=7.2 Score=41.90 Aligned_cols=72 Identities=19% Similarity=0.308 Sum_probs=41.6
Q ss_pred hHHHHHHHHHH---HHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 227 QTEVFKRNAVN---KLVEMVHADITGMRKA---REVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 227 a~E~~r~s~ls---al~dkl~~el~~l~~t---~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
+.+.+|..=+. .+-+.++.+++.|... +.++++.+......|++..++|.+-+++..++.+.|.++++.++.
T Consensus 544 a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~ 621 (717)
T PF10168_consen 544 ATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQ 621 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544222 2333344443333333 333444444444677777777888888888888888888887643
No 77
>PRK11637 AmiB activator; Provisional
Probab=85.30 E-value=11 Score=37.54 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 268 LRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 268 L~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
|+....+.+..|.+|+++.+.|++.|..+
T Consensus 224 L~~~~~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 224 LESSLQKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444443
No 78
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=85.13 E-value=5.8 Score=42.24 Aligned_cols=64 Identities=20% Similarity=0.366 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 039489 240 VEMVHADITGMRKAREVEVEGLFSTQ----ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDIL 303 (304)
Q Consensus 240 ~dkl~~el~~l~~t~~ae~e~l~~~q----~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~ 303 (304)
++-.+++|+++.+..++++..|.... +.|...-+.|++.++.|+.++....+.+......+|+|
T Consensus 135 EE~~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L 202 (739)
T PF07111_consen 135 EEGSQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLL 202 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777888877776644 56677777788888888887777777777666655554
No 79
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=84.94 E-value=7.1 Score=40.98 Aligned_cols=42 Identities=21% Similarity=0.132 Sum_probs=24.1
Q ss_pred CeEEEecCCCceecCCCCcccCCCceecccc-ccccCCCCCHHHHHHHH
Q 039489 105 PCVYVNPTRDMIIKRPHPHVTPSGLVSIPYL-QNWIYPSSNLVDLVREL 152 (304)
Q Consensus 105 PivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL-~~W~~~~s~L~~Lv~~l 152 (304)
=||=|+|--+-.| ..+|-+|.+.+-+= .+|. .+.++.+|..+
T Consensus 245 lIVGIDPGiTtgi----AvldldGevl~~~S~r~~~--~~eVve~I~~l 287 (652)
T COG2433 245 LIVGIDPGITTGI----AVLDLDGEVLDLESRRGID--RSEVVEFISEL 287 (652)
T ss_pred eEEEeCCCceeeE----EEEecCCcEEeeeccccCC--HHHHHHHHHHc
Confidence 4566666433333 34799998765332 2555 56666666554
No 80
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=84.73 E-value=8.7 Score=32.71 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489 245 ADITGMRKAREVEVEGLFSTQ--ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSD 301 (304)
Q Consensus 245 ~el~~l~~t~~ae~e~l~~~q--~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~ 301 (304)
.+-.+|+..--|.-=..++++ .||++.+..|...|+.|.+|..++..++..++.+-+
T Consensus 54 QrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e 112 (135)
T KOG4196|consen 54 QRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYE 112 (135)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334433334444444554 677777777877888887777777777776665543
No 81
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=84.56 E-value=5 Score=30.66 Aligned_cols=13 Identities=46% Similarity=0.667 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 039489 277 RGLKELQDEREGL 289 (304)
Q Consensus 277 ~~I~~L~~E~~eL 289 (304)
+-+++++.+.+.|
T Consensus 54 ~~~~~~e~~~~~l 66 (74)
T PF12329_consen 54 KKLEELEKELESL 66 (74)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 82
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=84.53 E-value=8.2 Score=39.85 Aligned_cols=25 Identities=40% Similarity=0.617 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
..|.++.+.|++-.+.|++++++|+
T Consensus 83 ~rL~qRee~Lekr~e~Lekre~~Le 107 (514)
T TIGR03319 83 RRLLQREETLDRKMESLDKKEENLE 107 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444333333
No 83
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=84.49 E-value=4.6 Score=40.66 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039489 274 EIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
.++..|.+.+.+.+++++.|..+
T Consensus 77 ~~~~ql~~s~~~l~~~~~~I~~~ 99 (420)
T COG4942 77 SLEAQLIETADDLKKLRKQIADL 99 (420)
T ss_pred HHHHHHHHHHhHHHHHHhhHHHH
Confidence 33333444444444444444433
No 84
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=84.36 E-value=17 Score=31.19 Aligned_cols=70 Identities=10% Similarity=0.107 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489 232 KRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALL---RRREEEIDRGLKELQDEREGLEQQLQIVLMNSD 301 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL---~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~ 301 (304)
+.+.+++..++....++++..........|..++... ++.+.+|...+.........-|+.|++|...++
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe 92 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENE 92 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 3455666666666666666666555555555555443 334445555555555555555555555544443
No 85
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=84.19 E-value=19 Score=28.49 Aligned_cols=71 Identities=15% Similarity=0.225 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 228 TEVFKRNAVNKLVEMVHADITGMRK--AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 228 ~E~~r~s~lsal~dkl~~el~~l~~--t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
+-.-...+|+.++..+..++....+ ..+++++.+..-.++|.++=.+.+.-.++|+.-..|+.+.|.....
T Consensus 9 al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e 81 (89)
T PF13747_consen 9 ALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIE 81 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344667888888888888877766 5566666666666777777777777777777777777777765543
No 86
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=84.02 E-value=5.7 Score=32.54 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 241 EMVHADITGMRKAREVEVEGLFSTQ-ALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 241 dkl~~el~~l~~t~~ae~e~l~~~q-~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
+++.+|+++|.++.++.+.+.-+.- .|+++=+++++..|++.++...+..
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~ 61 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTG 61 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8899999999999999988877655 7777778888888888888777773
No 87
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=83.95 E-value=1.7 Score=35.50 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=17.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 256 VEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQ 291 (304)
Q Consensus 256 ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~ 291 (304)
++++.+.+-.++|+++.++|++.|+.|++..+-+|+
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe 69 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEE 69 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHH
Confidence 333334444445555555555555555554344443
No 88
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=83.80 E-value=10 Score=32.91 Aligned_cols=38 Identities=32% Similarity=0.437 Sum_probs=20.5
Q ss_pred HHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 254 REVEVEGLFST--QALLRRREEEIDRGLKELQDEREGLEQ 291 (304)
Q Consensus 254 ~~ae~e~l~~~--q~eL~~~~~~l~~~I~~L~~E~~eLe~ 291 (304)
.++|+..|.+. ..+|...-+.+++.++.|+.+.+.|..
T Consensus 98 l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 98 LEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444442 255666666666666666666655544
No 89
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=83.76 E-value=7.2 Score=39.24 Aligned_cols=63 Identities=17% Similarity=0.292 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVE---------GLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e---------~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
+.+.+...+++.+++++.+......+ ...+....|++...++.+.+++|+++.++|+..++..
T Consensus 337 ~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 337 EELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555555555555554333322 1223346777777888888888888888888888877
No 90
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=83.63 E-value=10 Score=29.32 Aligned_cols=64 Identities=14% Similarity=0.268 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRR-REEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~-~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
.+|++|...++.|+..+.-..+++-+.+++++.-+.. .+..|...|+.|-++.+.=-.+|.+|.
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L~ 77 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKLY 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888888889999999999998888888844433 344566666555555555555555543
No 91
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=83.62 E-value=6.9 Score=34.67 Aligned_cols=32 Identities=16% Similarity=0.360 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489 270 RREEEIDRGLKELQDEREGLEQQLQIVLMNSD 301 (304)
Q Consensus 270 ~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~ 301 (304)
++.++.++.|++|++|.++.|..++.|.++.+
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555554443
No 92
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=83.58 E-value=16 Score=33.15 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 227 QTEVFKRNAVNKLVEMVH---ADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 227 a~E~~r~s~lsal~dkl~---~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
+..+|||-.|.+-...+. ++-++--.+.+++++-...-+++...++....+....|+.|+.+...+|..|..
T Consensus 101 A~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~ 175 (192)
T PF11180_consen 101 ADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQR 175 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566676655544443333 333444445555555555555666666666666666666666666666655543
No 93
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=83.55 E-value=15 Score=34.47 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEGLFSTQA 266 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~ 266 (304)
++|..-.+.++.++.+|++...+.++.+.+++.
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~ 124 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKLEK 124 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444443
No 94
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=83.50 E-value=19 Score=28.09 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 264 TQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 264 ~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
+...|+.+.+.+++-|+.|+.+.+.+++.+..+..+
T Consensus 63 ~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 63 AIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447888899999999999999999999988887654
No 95
>PRK11637 AmiB activator; Provisional
Probab=83.46 E-value=8 Score=38.58 Aligned_cols=29 Identities=3% Similarity=0.018 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 039489 249 GMRKAREVEVEGLFSTQALLRRREEEIDR 277 (304)
Q Consensus 249 ~l~~t~~ae~e~l~~~q~eL~~~~~~l~~ 277 (304)
+.++..+++++.+..+..+++..+.+|+.
T Consensus 184 ~~k~~le~~~~~l~~~~~e~~~~k~~L~~ 212 (428)
T PRK11637 184 AQKAELEEKQSQQKTLLYEQQAQQQKLEQ 212 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444443333
No 96
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=83.42 E-value=16 Score=32.03 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 260 GLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 260 ~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
.+..++..++++..+|...|+.|+.+...|+..+..+..
T Consensus 79 ~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~ 117 (158)
T PF09744_consen 79 ELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSD 117 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344445667777777777777777777777755554433
No 97
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=83.40 E-value=8.5 Score=31.69 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHH-----------HHHHHHHHHHHHHHHHhh
Q 039489 231 FKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRR-EEEIDRGLK-----------ELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 231 ~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~-~~~l~~~I~-----------~L~~E~~eLe~~l~~l~~ 298 (304)
+...++++++++-.--.++-++-.++.|.....-+.++... ..+++.++. .|+.+.++|+++++.|.+
T Consensus 25 k~~klvDelVkkGeln~eEak~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Len 104 (108)
T COG3937 25 KVQKLVDELVKKGELNAEEAKRFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLEN 104 (108)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555444444556666666666666555555443 335555554 444667777777777765
Q ss_pred c
Q 039489 299 N 299 (304)
Q Consensus 299 ~ 299 (304)
+
T Consensus 105 k 105 (108)
T COG3937 105 K 105 (108)
T ss_pred H
Confidence 4
No 98
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.37 E-value=4.2 Score=37.35 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 233 RNAVNKLVEMVHA-DITGMRKAREVEVEGLFSTQ----ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 233 ~s~lsal~dkl~~-el~~l~~t~~ae~e~l~~~q----~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
..+|..+++||+. ++.+.-.+.+++|..+.+-| =-|.++--.+|..|+++..+.+|||++|..|..
T Consensus 6 ~qlle~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~ 76 (233)
T COG3416 6 KQLLENLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQA 76 (233)
T ss_pred HHHHHHHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777777764 56666678888888888877 457777778899999999999999999998865
No 99
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=83.34 E-value=17 Score=30.77 Aligned_cols=24 Identities=8% Similarity=-0.031 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Q 039489 242 MVHADITGMRKAREVEVEGLFSTQ 265 (304)
Q Consensus 242 kl~~el~~l~~t~~ae~e~l~~~q 265 (304)
.|..+|+.+-+..++-+|-...++
T Consensus 65 hLsqRId~vd~klDe~~ei~~~i~ 88 (126)
T PF07889_consen 65 HLSQRIDRVDDKLDEQKEISKQIK 88 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333444444444444444333333
No 100
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=83.14 E-value=3.6 Score=38.60 Aligned_cols=64 Identities=20% Similarity=0.226 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 232 KRNAVNKLVEMVHA-DITGMRKAREVEVEGLFSTQ----ALLRRREEEIDRGLKELQDEREGLEQQLQI 295 (304)
Q Consensus 232 r~s~lsal~dkl~~-el~~l~~t~~ae~e~l~~~q----~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~ 295 (304)
-+.+|..+++||+. +....-...+++|....+-| =-|.+.--..|..|++++.+.++||.+|+.
T Consensus 5 E~qLI~~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 5 ERQLIDDLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36788899998876 55555556777777777766 456666677888999999999999999865
No 101
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=82.97 E-value=12 Score=33.49 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 039489 280 KELQDEREGLEQQL 293 (304)
Q Consensus 280 ~~L~~E~~eLe~~l 293 (304)
+.|+++.++|+..+
T Consensus 113 ~~l~~~~~~l~~el 126 (188)
T PF03962_consen 113 EELKKELKELKKEL 126 (188)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 102
>PF06595 BDV_P24: Borna disease virus P24 protein; InterPro: IPR009517 Borna disease virus (BDV) is a non-cytolytic, neurotropic RNA virus that has a broad host range in warm-blooded animals. BDV is an enveloped virus, non-segmented, negative-stranded RNA genome and has an organisation characteristic of a member of Bornaviridae in the order of Mononegavirale. This family consists of several BDV P24 (phosphoprotein 24) proteins. They are essential components of the RNA polymerase transcription and replication complex. P24 is encoded by open reading frame II (ORF-II) and undergoes high rates of mutation in humans. They bind amphoterin-HMGB1, a multifunctional protein, directly may cause deleterious effects in cellular functions by its interference with HMGB1 []. Horse and human P24 have no species-specific amino acid residues, suggesting that the two viruses related [, ]. Numerous interactions of the immune system with the central nervous system have been described. Mood and psychotic disorders, such as severe depression and schizophrenia, are both heterogeneous disorders regarding clinical symptomatology, the acuity of symptoms, the clinical course and the treatment response []. BDV p24 RNA has been detected in the peripheral blood mononuclear cells (PBMCs) of psychiatric patients with such conditions []. Some studies find a significant difference in the prevalence of BDV p24 RNA in patients with mood disorders and schizophrenia [], whilst others find no difference between patients and control groups []. Consequently, debate about the role of BDV in psychiatric diseases remains alive.
Probab=82.87 E-value=9.4 Score=33.79 Aligned_cols=78 Identities=15% Similarity=0.250 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
Q 039489 226 DQTEVFKRNAVNKLVEM-------VHADITGMRKAREVEVEGLFSTQALLRRREE---------EIDRGLKELQDEREGL 289 (304)
Q Consensus 226 ~a~E~~r~s~lsal~dk-------l~~el~~l~~t~~ae~e~l~~~q~eL~~~~~---------~l~~~I~~L~~E~~eL 289 (304)
.+-|+..+.++.++.|. ++..|..+-.+.++-.|+|..+|.|+-+--+ .|-++|+.|++-.+.+
T Consensus 69 LSndeLikqLvtElae~~mieaE~l~~~L~~i~~r~e~g~ESLSsLQ~Etl~~iq~~Dya~SIk~lGEN~kvLDRS~Ktm 148 (201)
T PF06595_consen 69 LSNDELIKQLVTELAENSMIEAEGLKGSLDDIAQRMESGLESLSSLQIETLQAIQQSDYADSIKQLGENIKVLDRSMKTM 148 (201)
T ss_pred hchHHHHHHHHHHHhhccchhHHHhhccHHHHHHHHHHhHHHHHHHHHHHHHHHHhhchhHHHHHHcchhhHHHHHHHHH
Confidence 35567777888888754 5666677777888889999999966655433 3334455555555555
Q ss_pred HHHHHHHhhccccc
Q 039489 290 EQQLQIVLMNSDIL 303 (304)
Q Consensus 290 e~~l~~l~~~~~~~ 303 (304)
-.-...+.++.|+|
T Consensus 149 ~eTmklMmEKiDLL 162 (201)
T PF06595_consen 149 METMKLMMEKIDLL 162 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555666554
No 103
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=82.68 E-value=14 Score=35.11 Aligned_cols=63 Identities=24% Similarity=0.372 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQ----------DEREGLEQQLQIV 296 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~----------~E~~eLe~~l~~l 296 (304)
..|.+....+..+++...+.....-..-..+++.+++++.+|++.=++|+ +|-+.||.+|+.+
T Consensus 165 ~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 165 KALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666666666777777777777777766665 4666666666654
No 104
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=82.52 E-value=13 Score=36.61 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 230 VFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRR---EEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 230 ~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~---~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
.+...-+++..||+..+=+-+..+.+.+++.....+.+|.+- -+....+|.++.++..++...|+.+
T Consensus 244 ~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~v 313 (359)
T PF10498_consen 244 DKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQV 313 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 345566777777888877888888888888877777444443 3355566666666666665555544
No 105
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=82.49 E-value=21 Score=30.29 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 039489 232 KRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ 265 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q 265 (304)
.+..+....-++.+++..+....+.+.+.+...+
T Consensus 53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~e 86 (151)
T PF11559_consen 53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELE 86 (151)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333333
No 106
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=82.40 E-value=16 Score=36.67 Aligned_cols=72 Identities=22% Similarity=0.214 Sum_probs=59.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 226 DQTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 226 ~a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
+..+-++++....+.+.-..--+...++.+.+.+.+..++ .+|.++=++|...+..|..++..||+++..+.
T Consensus 44 ~~s~~ir~~sr~l~~e~~~~t~~~q~dtt~~L~~R~~di~~Wk~el~~ele~l~~E~~~L~~~k~rle~~L~~~~ 118 (421)
T KOG2685|consen 44 DQSERIRRESRLLVNETNALTDKMQRDTTEKLGQRLDDVNFWKGELDRELEDLAAEIDDLLHEKRRLERALNALA 118 (421)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556677777776766666666777888888888888887 99999999999999999999999999998764
No 107
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=82.35 E-value=12 Score=33.20 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNS 300 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~ 300 (304)
+.++++-+++++.|++.+.+.+.|.++.+.+...=
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56666667777777778888888888888776543
No 108
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=82.15 E-value=13 Score=33.12 Aligned_cols=29 Identities=10% Similarity=0.143 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEGLF 262 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~l~ 262 (304)
.-|+..+++|...++.-.+..++|++.|.
T Consensus 105 qeL~~tf~rL~~~Vd~~~~eL~~eI~~L~ 133 (171)
T PF04799_consen 105 QELSSTFARLCQQVDQTKNELEDEIKQLE 133 (171)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333
No 109
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=82.08 E-value=9.7 Score=38.19 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
++|+.+..++++.|..|+++.++++..+..+.
T Consensus 72 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (418)
T TIGR00414 72 EEIKKELKELKEELTELSAALKALEAELQDKL 103 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777777778888877777776654
No 110
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=81.96 E-value=10 Score=33.69 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 039489 233 RNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEI 275 (304)
Q Consensus 233 ~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l 275 (304)
..+|...+|..++||++-.++.+.+++.+..+|.+++.=+++.
T Consensus 111 f~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa 153 (171)
T PF04799_consen 111 FARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKA 153 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666665554444433
No 111
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=81.92 E-value=8.4 Score=40.08 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 239 LVEMVHADITGMRKAREVEVEGLFSTQALLR--------------RREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 239 l~dkl~~el~~l~~t~~ae~e~l~~~q~eL~--------------~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
...+|.+|++.+-+..+++...-.+++.+|. ++-.+++++++.++.|+++|..+-+.|+.
T Consensus 372 ~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~ 445 (546)
T PF07888_consen 372 EIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLE 445 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544444444443333 33335667777777777666666665543
No 112
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=81.90 E-value=20 Score=30.85 Aligned_cols=48 Identities=23% Similarity=0.292 Sum_probs=27.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039489 253 AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNS 300 (304)
Q Consensus 253 t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~ 300 (304)
+.++++++|..--..|..+.+.++..+..|..|++.|++.++....+.
T Consensus 49 n~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv 96 (140)
T PF10473_consen 49 NSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKV 96 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455566666666666666666666666666554443
No 113
>PHA01750 hypothetical protein
Probab=81.78 E-value=8.4 Score=29.14 Aligned_cols=26 Identities=15% Similarity=0.348 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 231 FKRNAVNKLVEMVHADITGMRKAREV 256 (304)
Q Consensus 231 ~r~s~lsal~dkl~~el~~l~~t~~a 256 (304)
++.++-+|+.|.++.|+..|+.+.++
T Consensus 28 IKq~lkdAvkeIV~~ELdNL~~ei~~ 53 (75)
T PHA01750 28 IKQALKDAVKEIVNSELDNLKTEIEE 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666655554433
No 114
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=81.71 E-value=13 Score=38.71 Aligned_cols=7 Identities=14% Similarity=0.378 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 039489 281 ELQDERE 287 (304)
Q Consensus 281 ~L~~E~~ 287 (304)
.|..+.+
T Consensus 210 ~L~~q~~ 216 (546)
T PF07888_consen 210 SLKEQLA 216 (546)
T ss_pred HHHHHHH
Confidence 3333333
No 115
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=81.35 E-value=13 Score=35.98 Aligned_cols=43 Identities=21% Similarity=0.481 Sum_probs=20.0
Q ss_pred CCcccCCCceeccccc--cccCC-----CCCHHHHHHHHHH-HhccCCCCCC
Q 039489 121 HPHVTPSGLVSIPYLQ--NWIYP-----SSNLVDLVRELSA-CFSREPPLYS 164 (304)
Q Consensus 121 ~~~Vd~~G~v~lpyL~--~W~~~-----~s~L~~Lv~~l~~-~F~~~pPl~~ 164 (304)
+.+|.+ |.|.+|.|. .|.-. -+..-.+++++.. ++...||||.
T Consensus 57 ~~~~~A-~~~~~P~Lely~~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~ 107 (325)
T PF08317_consen 57 EDYVVA-GYCTVPMLELYQFSCRELKKYISEGRQIFEEIEEETYESNPPLFR 107 (325)
T ss_pred HHHHHH-hccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHH
Confidence 444443 555667776 33310 1133344444444 3344566664
No 116
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=81.22 E-value=18 Score=32.36 Aligned_cols=68 Identities=22% Similarity=0.257 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 226 DQTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 226 ~a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
+.+.....--+.++.+++|+-.++.+. .++|+..|.+.- . -+++++.|.+|+.|..+.+++|..+.+.
T Consensus 78 ~eel~~ld~~i~~l~ek~q~l~~t~s~-veaEik~L~s~L---t--~eemQe~i~~L~kev~~~~erl~~~k~g 145 (201)
T KOG4603|consen 78 DEELQVLDGKIVALTEKVQSLQQTCSY-VEAEIKELSSAL---T--TEEMQEEIQELKKEVAGYRERLKNIKAG 145 (201)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc---C--hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555666666666666655444443 344444444322 1 1234455555555555555555555443
No 117
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.15 E-value=17 Score=37.07 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=16.5
Q ss_pred eeccccccccCCCCCHHHHHHH
Q 039489 130 VSIPYLQNWIYPSSNLVDLVRE 151 (304)
Q Consensus 130 v~lpyL~~W~~~~s~L~~Lv~~ 151 (304)
+++..|..|..-++-+-.+++.
T Consensus 201 fh~~cl~~w~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 201 FHCSCLMKWWDSSCPVCRYCQS 222 (493)
T ss_pred cchHHHhhcccCcChhhhhhcC
Confidence 4678899998777777666655
No 118
>COG1422 Predicted membrane protein [Function unknown]
Probab=81.12 E-value=17 Score=33.18 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 275 IDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 275 l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
-++.+++|++|+.|+-+--.++.+
T Consensus 96 d~~~lkkLq~~qmem~~~Q~elmk 119 (201)
T COG1422 96 DMKKLKKLQEKQMEMMDDQRELMK 119 (201)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788888888887655544443
No 119
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=81.07 E-value=4.3 Score=43.87 Aligned_cols=10 Identities=20% Similarity=0.624 Sum_probs=5.2
Q ss_pred CHHHHHHHHH
Q 039489 144 NLVDLVRELS 153 (304)
Q Consensus 144 ~L~~Lv~~l~ 153 (304)
+|..||..|+
T Consensus 455 d~~~liD~~v 464 (1102)
T KOG1924|consen 455 DLTELIDKMV 464 (1102)
T ss_pred cHHHHHHHHH
Confidence 5555555544
No 120
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=80.81 E-value=13 Score=33.95 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 039489 232 KRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ----ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDIL 303 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q----~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~ 303 (304)
||-++-.-++..+.-.++.+.+...-++.+..+- .+|+..=+.+++..+..++.-+++..+|..+++.+|+|
T Consensus 22 KRdilvdrVe~Ardsq~eaqeQF~sALe~f~sl~~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~AL 97 (201)
T PF11172_consen 22 KRDILVDRVEDARDSQQEAQEQFKSALEQFKSLVNFDGGDLEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADAL 97 (201)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344333344455555555555555555555543 89999999999999999999999999999999888765
No 121
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=80.63 E-value=21 Score=31.98 Aligned_cols=50 Identities=18% Similarity=0.257 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 039489 227 QTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEID 276 (304)
Q Consensus 227 a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~ 276 (304)
-+|..|-.-|..|...|+..|+....+.+++.+.+.++.+++.+-.++|+
T Consensus 70 eEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 70 EEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888899999999999999999999999999997755555444333
No 122
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=80.38 E-value=9.3 Score=35.14 Aligned_cols=37 Identities=35% Similarity=0.505 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 262 FSTQALLRRREE---EIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 262 ~~~q~eL~~~~~---~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
.+.++||+++++ +|.+.++.-.+|++|...+++.|.-
T Consensus 22 ~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~ 61 (214)
T PF07795_consen 22 MEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLLL 61 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777665 4667777888888888888888873
No 123
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=80.28 E-value=5.6 Score=40.44 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
++|.++++++++-|..|+++.++|.+.++.+
T Consensus 437 ~~l~~~q~~le~qI~~Le~kl~~l~~~l~s~ 467 (489)
T KOG3684|consen 437 QELHSRQEELEKQIDTLESKLEALTASLSSL 467 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7778888888888888888888887777644
No 124
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.23 E-value=1.9 Score=41.22 Aligned_cols=31 Identities=32% Similarity=0.437 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 261 LFSTQALLRRREEEIDRGLKELQDEREGLEQ 291 (304)
Q Consensus 261 l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~ 291 (304)
+++.|+||.+++++|++-=++|++++.++.+
T Consensus 62 ~~~kq~eL~~rqeEL~Rke~ELdRREr~~a~ 92 (313)
T KOG3088|consen 62 LAKKQAELLKKQEELRRKEQELDRRERALAR 92 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 4445666666666666666666666666544
No 125
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=80.20 E-value=29 Score=33.48 Aligned_cols=64 Identities=25% Similarity=0.312 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEGLFSTQ---ALLRRREE-------EIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~-------~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
+.+.+-++.+..+|+++.+..++..+.+.+++ .+|+++++ .++..+.++++|.+.|+.+++...
T Consensus 53 ~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~ 126 (314)
T PF04111_consen 53 EKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYAS 126 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555554444444444443 22332222 333444444555555555554443
No 126
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=80.18 E-value=12 Score=37.60 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
++|+++..++++.|+.|+.+.++++..+..+..
T Consensus 69 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T PRK05431 69 EALIAEVKELKEEIKALEAELDELEAELEELLL 101 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777778888888888888888888876643
No 127
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=80.14 E-value=12 Score=33.38 Aligned_cols=17 Identities=35% Similarity=0.649 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039489 272 EEEIDRGLKELQDEREG 288 (304)
Q Consensus 272 ~~~l~~~I~~L~~E~~e 288 (304)
++++++.+++|++|.++
T Consensus 155 ~~e~~~~l~~l~~ei~~ 171 (176)
T PF12999_consen 155 REELEKKLEELEKEIQA 171 (176)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 128
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=80.09 E-value=13 Score=36.92 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=31.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 253 AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 253 t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
+..++-+.+++.+++|.++..+++..+++.+.+.+++|.++..+..+
T Consensus 325 ki~~~e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e~~l~~~~~~ 371 (373)
T COG5019 325 KIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKLKSN 371 (373)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 44555566666667777777777777777777777777777665543
No 129
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=80.04 E-value=22 Score=36.02 Aligned_cols=68 Identities=12% Similarity=0.081 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Q 039489 231 FKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ----ALLRRREEEIDRGLKE---LQDEREGLEQQLQIVLM 298 (304)
Q Consensus 231 ~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q----~eL~~~~~~l~~~I~~---L~~E~~eLe~~l~~l~~ 298 (304)
.....|++.++++|..+....+..++++..+.+-+ +|+.+.+.+|...+++ |++...|-|+.+++.++
T Consensus 253 ~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsesslemdee 327 (552)
T KOG2129|consen 253 LHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESESSLEMDEE 327 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 34455677778888888777777777776666544 5555555555555522 56666666666665543
No 130
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=79.98 E-value=14 Score=39.61 Aligned_cols=31 Identities=13% Similarity=0.239 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 039489 235 AVNKLVEMVHADITGMRKAREVEVEGLFSTQ 265 (304)
Q Consensus 235 ~lsal~dkl~~el~~l~~t~~ae~e~l~~~q 265 (304)
.++.-.|.|+.++..|..+++.|+..+..++
T Consensus 464 qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LE 494 (697)
T PF09726_consen 464 QLRQENEQLQNKLQNLVQARQQDKQSLQQLE 494 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566677777777777777776666655
No 131
>PLN02678 seryl-tRNA synthetase
Probab=79.97 E-value=12 Score=37.98 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
++|.++..+|++.|..|+.+.+++++.+..+..
T Consensus 74 ~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~ 106 (448)
T PLN02678 74 TELIAETKELKKEITEKEAEVQEAKAALDAKLK 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666777788888888888888888776643
No 132
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.88 E-value=17 Score=27.86 Aligned_cols=54 Identities=19% Similarity=0.275 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 238 KLVEMVHADITGMRKA---REVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQ 291 (304)
Q Consensus 238 al~dkl~~el~~l~~t---~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~ 291 (304)
+++|||-+.++...+| .+-|+|.|+.-.+.|.++...+....+.|++|.+.|+.
T Consensus 4 Ev~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~ 60 (79)
T COG3074 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544443 23334444444444444444444444444444444433
No 133
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=79.84 E-value=19 Score=30.47 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039489 277 RGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 277 ~~I~~L~~E~~eLe~~l~~l 296 (304)
..+.+.++-..+|++.|..-
T Consensus 93 ~llk~y~~~~~~L~k~I~~~ 112 (126)
T PF09403_consen 93 ELLKKYKDLLNKLDKEIAEQ 112 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 134
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=79.72 E-value=18 Score=31.17 Aligned_cols=32 Identities=9% Similarity=0.093 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 039489 242 MVHADITGMRKAREVEVEGLFSTQALLRRREE 273 (304)
Q Consensus 242 kl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~ 273 (304)
++-.+.+++-++..++.+++..+|+|+++.+.
T Consensus 24 ~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~ 55 (160)
T PF13094_consen 24 QLLDRKRALERQLAANLHQLELLQEEIEKEEA 55 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555555555555555444
No 135
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.70 E-value=12 Score=40.66 Aligned_cols=74 Identities=15% Similarity=0.174 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 230 VFKRNAVNKLVEMVHADITGMRKAREVEV-------EGLFSTQ----------ALLRRREEEIDRGLKELQDEREGLEQQ 292 (304)
Q Consensus 230 ~~r~s~lsal~dkl~~el~~l~~t~~ae~-------e~l~~~q----------~eL~~~~~~l~~~I~~L~~E~~eLe~~ 292 (304)
++-+.++....++++++|+++..+...+. +.+...| .+|++-..+-+-+++.|+++.++|+++
T Consensus 478 ~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE 557 (1118)
T KOG1029|consen 478 TKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKE 557 (1118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666777888877776554433 3333322 445555555556667777788888777
Q ss_pred HHHHhhccccc
Q 039489 293 LQIVLMNSDIL 303 (304)
Q Consensus 293 l~~l~~~~~~~ 303 (304)
.+.-...+|++
T Consensus 558 ~esk~~eidi~ 568 (1118)
T KOG1029|consen 558 TESKLNEIDIF 568 (1118)
T ss_pred HHHHHHhhhhH
Confidence 77666666553
No 136
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=79.68 E-value=32 Score=28.33 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=23.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 255 EVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQI 295 (304)
Q Consensus 255 ~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~ 295 (304)
..+.|+|..++..|+...+.+..-|.+|+.+..++.+++..
T Consensus 36 ~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 36 AKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556655555555555666655555555544
No 137
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=79.61 E-value=18 Score=30.53 Aligned_cols=61 Identities=20% Similarity=0.267 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEGLFST-----QALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~~-----q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
..+.+..+..+.+++++.+..+++.+.+.+- +++.++++.++++..++|++..+.+++.++
T Consensus 39 ~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~ 104 (158)
T PF03938_consen 39 AKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQQLQ 104 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555544444444443331 133444444555555555554444444443
No 138
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=79.56 E-value=25 Score=27.43 Aligned_cols=47 Identities=26% Similarity=0.335 Sum_probs=34.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 039489 257 EVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDIL 303 (304)
Q Consensus 257 e~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~ 303 (304)
++..|+..-..|-.|-+.+++..++|+.|.+-|.+=|..|+..+.|+
T Consensus 24 ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s~v~ 70 (80)
T PF10224_consen 24 EILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSSSVF 70 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33344444466777778888888899999999999998887776653
No 139
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=79.51 E-value=18 Score=38.98 Aligned_cols=36 Identities=11% Similarity=0.234 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSD 301 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~ 301 (304)
++|+++++++++.-++|.++.+++.+.-+.|..+.+
T Consensus 582 ~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 582 QELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555544433
No 140
>PLN02320 seryl-tRNA synthetase
Probab=79.34 E-value=11 Score=39.00 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
++|.++..+|++.|..|+.+..+++..+..+.
T Consensus 133 ~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~ 164 (502)
T PLN02320 133 QALVEEGKNLKEGLVTLEEDLVKLTDELQLEA 164 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666667777777777777777777777654
No 141
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=79.24 E-value=16 Score=27.81 Aligned_cols=45 Identities=11% Similarity=0.181 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 242 MVHADITGMRKAREVE---VEGLFSTQALLRRREEEIDRGLKELQDER 286 (304)
Q Consensus 242 kl~~el~~l~~t~~ae---~e~l~~~q~eL~~~~~~l~~~I~~L~~E~ 286 (304)
.|+.++++|+....++ .+.|..-...|+++++.+.+-|+.|=.+.
T Consensus 22 ~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 22 LLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666665543333 33333333566666665555555544443
No 142
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.05 E-value=18 Score=29.53 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 274 EIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
....++-+-++|.+.|+.+|..|+.+
T Consensus 63 vq~qvl~rtR~kl~~Leari~~LEar 88 (103)
T COG2960 63 VQRQVLLRTREKLAALEARIEELEAR 88 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777888888888877654
No 143
>PHA02562 46 endonuclease subunit; Provisional
Probab=78.92 E-value=17 Score=36.95 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=13.9
Q ss_pred CCHHHHHHHHHHHhccCCCCCCC
Q 039489 143 SNLVDLVRELSACFSREPPLYSQ 165 (304)
Q Consensus 143 s~L~~Lv~~l~~~F~~~pPl~~~ 165 (304)
+..-++-..+...|+.+...|.+
T Consensus 110 ~~~~~~~~~i~~~~g~~~~~f~~ 132 (562)
T PHA02562 110 ASSKDFQKYFEQMLGMNYKSFKQ 132 (562)
T ss_pred ccHHHHHHHHHHHHCCCHHHHhH
Confidence 34455666666677766666543
No 144
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=78.57 E-value=26 Score=31.39 Aligned_cols=46 Identities=15% Similarity=0.100 Sum_probs=22.9
Q ss_pred HHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhcccc
Q 039489 257 EVEGLFSTQALLRRREEEID-------RGLKELQDEREGLEQQLQIVLMNSDI 302 (304)
Q Consensus 257 e~e~l~~~q~eL~~~~~~l~-------~~I~~L~~E~~eLe~~l~~l~~~~~~ 302 (304)
.++.+..++.++++=+.+++ ..|+.|+++...+..++.+-.+|..+
T Consensus 108 ~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~ 160 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWTDNIFS 160 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34444444444444444444 33555555555555555555555443
No 145
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=78.54 E-value=29 Score=27.56 Aligned_cols=11 Identities=18% Similarity=0.332 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 039489 241 EMVHADITGMR 251 (304)
Q Consensus 241 dkl~~el~~l~ 251 (304)
+++-++|=.+.
T Consensus 18 e~vA~eLh~~Y 28 (87)
T PF12709_consen 18 EKVARELHALY 28 (87)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 146
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=78.46 E-value=27 Score=33.26 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=8.9
Q ss_pred HHHHHHHHhccCCCCCC
Q 039489 148 LVRELSACFSREPPLYS 164 (304)
Q Consensus 148 Lv~~l~~~F~~~pPl~~ 164 (304)
++..|..+|.+++=+.+
T Consensus 98 ~~silq~If~KHGDIAs 114 (269)
T PF05278_consen 98 QVSILQKIFEKHGDIAS 114 (269)
T ss_pred HHHHHHHHHHhCccHhh
Confidence 34444555666655544
No 147
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=78.42 E-value=9.1 Score=30.84 Aligned_cols=41 Identities=29% Similarity=0.336 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 039489 250 MRKAREVEVEGLFSTQALLRRREE-------EIDRGLKELQDEREGLE 290 (304)
Q Consensus 250 l~~t~~ae~e~l~~~q~eL~~~~~-------~l~~~I~~L~~E~~eLe 290 (304)
|+.+...+.+.+..+..||++++. +.=.||.+|+.||..++
T Consensus 4 Lr~~v~~er~~~~~L~~ELEeER~AaAsAA~EAMaMI~RLQ~EKAa~~ 51 (94)
T PF04576_consen 4 LRRAVEAERKALAALYAELEEERSAAASAASEAMAMILRLQEEKAAVE 51 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344444444444455555554443 23335555555555544
No 148
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.40 E-value=27 Score=32.53 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=18.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 259 EGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 259 e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
+.+..+.++.+.-+++++.....++..++|++.--+.+
T Consensus 86 ~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiI 123 (246)
T KOG4657|consen 86 ARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEII 123 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444555555555555555555555555544444433
No 149
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=78.36 E-value=29 Score=26.76 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 269 RRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 269 ~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
+.+=+....++.+++.+.++||.+|..|+.
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334446777888888888888888888765
No 150
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=78.35 E-value=16 Score=34.68 Aligned_cols=42 Identities=17% Similarity=0.081 Sum_probs=30.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039489 259 EGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNS 300 (304)
Q Consensus 259 e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~ 300 (304)
+.+..+..|+..|.+.+++..+.|++|..+.+..+..+..+.
T Consensus 198 ~~~~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~ 239 (264)
T PF07246_consen 198 EDEKILHEELEARESGLRNESKWLEHELSDAKEDMIRLRNDI 239 (264)
T ss_pred hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444555677777777788888888888888877777776654
No 151
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=78.34 E-value=29 Score=27.38 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039489 273 EEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 273 ~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
..|+..+..|+.....|...+.
T Consensus 75 ~~l~~q~~~l~~~l~~l~~~~~ 96 (127)
T smart00502 75 KVLEQQLESLTQKQEKLSHAIN 96 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 152
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=78.32 E-value=11 Score=41.45 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489 242 MVHADITGMRKAREVEVEGLFSTQALLRRREE---EIDRGLKELQDEREGLEQQLQIVLMNSD 301 (304)
Q Consensus 242 kl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~---~l~~~I~~L~~E~~eLe~~l~~l~~~~~ 301 (304)
||+.-+-.||+....+.....+++.||++.+. +|.+.-++|.++.+.+|..|..+....|
T Consensus 379 rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 379 RLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444555544443332 3333345555555555555555544443
No 153
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=78.19 E-value=15 Score=39.80 Aligned_cols=8 Identities=25% Similarity=0.501 Sum_probs=4.1
Q ss_pred eeEEEeec
Q 039489 90 IPVIIWLM 97 (304)
Q Consensus 90 IPi~Iwlp 97 (304)
+|+.|.|-
T Consensus 312 vp~di~l~ 319 (771)
T TIGR01069 312 VPFTLNLK 319 (771)
T ss_pred EeceeEeC
Confidence 45555554
No 154
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=77.83 E-value=40 Score=31.30 Aligned_cols=32 Identities=9% Similarity=0.179 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
.+++.++++..+.|.++.+|...|...|..++
T Consensus 70 kqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 70 KQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555443
No 155
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=77.78 E-value=9.6 Score=38.94 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 265 QALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 265 q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
+.+|.+++++|++.+..++.....|.+++..+
T Consensus 111 ~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 111 TQELTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35666666666666666666666666666544
No 156
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=77.52 E-value=15 Score=43.73 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 039489 227 QTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ 265 (304)
Q Consensus 227 a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q 265 (304)
-++..++..+.+..-+++.|...++.+.+++.+++..++
T Consensus 1311 e~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~ 1349 (1930)
T KOG0161|consen 1311 EEETREKSALENALRQLEHELDLLREQLEEEQEAKNELE 1349 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888999999999999999988887655
No 157
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=77.51 E-value=14 Score=35.87 Aligned_cols=65 Identities=15% Similarity=0.041 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 232 KRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
+...+..++.+++..++.++...+.--..+-++-.+|+.++..|.+.+..|+...+++......|
T Consensus 71 ~~~~l~klf~k~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L 135 (333)
T PF05816_consen 71 KKGFLGKLFGKAKNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQEL 135 (333)
T ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777776666655555555556666666665555555555555544444444
No 158
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=77.48 E-value=3.6 Score=30.69 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=11.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Q 039489 258 VEGLFSTQALLRRREEEIDRGLKEL 282 (304)
Q Consensus 258 ~e~l~~~q~eL~~~~~~l~~~I~~L 282 (304)
++.+.+-.++|+++.++|++.|+.|
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333344444444444444444
No 159
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=77.09 E-value=14 Score=37.23 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
++|+.++++|-..+++++.+.++|..++.++..+
T Consensus 186 ~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~ 219 (447)
T KOG2751|consen 186 KNLKEEEERLLQQLEELEKEEAELDHQLKELEFK 219 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555443
No 160
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=76.84 E-value=31 Score=26.29 Aligned_cols=63 Identities=11% Similarity=0.108 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 231 FKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 231 ~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
-..+++.++-...-.+.++.. ..-.+|...-+.-+++.+.|...+..|.+..+.|.+.+++|.
T Consensus 7 qLl~ale~Lq~~y~~q~~~Wq----~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 7 QLLSALEELQQSYEKQQQEWQ----SSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444444443333333333 333334444456666677888889999999999988888774
No 161
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=76.83 E-value=25 Score=31.84 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
..|++++..|...|..|++|...|......+.+
T Consensus 91 rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~ 123 (193)
T PF14662_consen 91 RQLEKEQQSLVAEIETLQEENGKLLAERDGLKK 123 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHH
Confidence 445555555555555555555555444444433
No 162
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=76.64 E-value=30 Score=30.63 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 235 AVNKLVEMVHADITGMRKAREVEVEGLFSTQALL-RRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 235 ~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL-~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
++.+..+.++++++.+.+..++.-+. +...| +.-.+.+..+|++++++..||...++.+.
T Consensus 45 ~itk~veeLe~~~~q~~~~~s~~~~~---~vk~L~k~~~~~l~d~inE~t~k~~El~~~i~el~ 105 (165)
T PF09602_consen 45 WITKQVEELEKELKQFKREFSDLYEE---YVKQLRKATGNSLNDSINEWTDKLNELSAKIQELL 105 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666664443333222 23444 34466888888888888888888887764
No 163
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=76.63 E-value=13 Score=36.00 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
....+|-+.|++...+++..++|+|++=+.+
T Consensus 301 ~gv~~rT~~L~eVm~e~E~~KqemEe~G~~m 331 (384)
T KOG0972|consen 301 VGVSSRTETLDEVMDEIEQLKQEMEEQGAKM 331 (384)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3444555567777777777777776654443
No 164
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=76.62 E-value=13 Score=30.13 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039489 274 EIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
+|+..|.+|+.+.++|+.+++.+
T Consensus 69 ~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 69 DLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444444444444444444443
No 165
>PHA02562 46 endonuclease subunit; Provisional
Probab=76.53 E-value=21 Score=36.28 Aligned_cols=8 Identities=25% Similarity=0.193 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q 039489 16 QQFLSSVL 23 (304)
Q Consensus 16 ~~wL~~vl 23 (304)
.+.+.-+|
T Consensus 44 l~aI~~~l 51 (562)
T PHA02562 44 LEALTFAL 51 (562)
T ss_pred HHHHHHHH
Confidence 33333333
No 166
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=76.33 E-value=14 Score=35.72 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 239 LVEMVHADITGMRKAREVEVEGLFSTQ-ALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 239 l~dkl~~el~~l~~t~~ae~e~l~~~q-~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
-.++.|.+..++-+..++..+.+.+.. .+|+....++++.|..++++.+++++.+..+.
T Consensus 42 ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~ 101 (301)
T PF06120_consen 42 NAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLK 101 (301)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666665544 55555555665555555555555555555443
No 167
>PRK10404 hypothetical protein; Provisional
Probab=76.17 E-value=23 Score=28.75 Aligned_cols=52 Identities=8% Similarity=0.099 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 241 EMVHADITGMRKAREVEVEGLFST-QALLRRREEEIDRGLKELQDEREGLEQQ 292 (304)
Q Consensus 241 dkl~~el~~l~~t~~ae~e~l~~~-q~eL~~~~~~l~~~I~~L~~E~~eLe~~ 292 (304)
+++..||++|.++.++++...... .+++++=+++++..++..++...++++.
T Consensus 8 ~~l~~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~ 60 (101)
T PRK10404 8 TRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDS 60 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 566777777777777666544332 2555555556666666666555544443
No 168
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=76.05 E-value=24 Score=34.16 Aligned_cols=43 Identities=26% Similarity=0.475 Sum_probs=26.0
Q ss_pred CCcccCCCceeccccccccCC-------CCCHHHHHHHHHHHhc-cCCCCCC
Q 039489 121 HPHVTPSGLVSIPYLQNWIYP-------SSNLVDLVRELSACFS-REPPLYS 164 (304)
Q Consensus 121 ~~~Vd~~G~v~lpyL~~W~~~-------~s~L~~Lv~~l~~~F~-~~pPl~~ 164 (304)
+.|| ..|.+.+|.|.=..+- -+.--.++..+...+. ..||||.
T Consensus 52 ~~~v-~A~~~~iP~LElY~~sC~EL~~~I~egr~~~~~~E~et~~~nPpLF~ 102 (312)
T smart00787 52 DQYV-VAGYCTVPLLELYQFSCKELKKYISEGRDLFKEIEEETLINNPPLFK 102 (312)
T ss_pred HHHH-HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHH
Confidence 5666 4677788888733320 1233557777766554 6688874
No 169
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=76.01 E-value=31 Score=34.65 Aligned_cols=31 Identities=16% Similarity=0.046 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFSTQA 266 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~~q~ 266 (304)
+.++-++++.|++-+....++|.....++++
T Consensus 235 ~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEe 265 (395)
T PF10267_consen 235 IEKLKEQYQREYQFILEALQEERYRYERLEE 265 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3333334444444444444444444444443
No 170
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=75.95 E-value=17 Score=39.00 Aligned_cols=56 Identities=20% Similarity=0.296 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 242 MVHADITGMRKAREVEVEGLFSTQALLRRRE---EEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 242 kl~~el~~l~~t~~ae~e~l~~~q~eL~~~~---~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
.++.+|..++...+.+...+..+.....+.+ +.||+-|.+.++.+.+||++|..-+
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555444444444444443333333 4778888888888888888887664
No 171
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=75.93 E-value=4.3 Score=33.56 Aligned_cols=50 Identities=14% Similarity=0.239 Sum_probs=37.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 039489 253 AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDI 302 (304)
Q Consensus 253 t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~ 302 (304)
...+.|-.|..--.+++..+++++..|.-++.+..||+..|..|+.+.+-
T Consensus 54 ~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~~~~~ 103 (116)
T PF05064_consen 54 ENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEKQVEK 103 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555558888889999999999999999999998877766543
No 172
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=75.92 E-value=23 Score=26.58 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQ 292 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~ 292 (304)
..|+++.+..+..|..+++..++++.+
T Consensus 23 ~~lE~~~~~~e~~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 23 DKLEKRDAANEKDIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 173
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=75.85 E-value=10 Score=33.03 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQI 295 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~ 295 (304)
++|+|.-+++++.+++++++...-+..+..
T Consensus 69 aKl~Rk~~kl~~el~~~~~~~~~~~~~~~~ 98 (161)
T PF04420_consen 69 AKLNRKLDKLEEELEKLNKSLSSEKSSFDK 98 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666655554444433
No 174
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=75.64 E-value=35 Score=26.44 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 245 ADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQ 292 (304)
Q Consensus 245 ~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~ 292 (304)
.+|+......++|++.|..+-+.|+..=.+....=+.|+++..+++..
T Consensus 8 k~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356666677889999999999999999999999999999999999885
No 175
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=75.51 E-value=29 Score=30.82 Aligned_cols=62 Identities=13% Similarity=0.144 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039489 239 LVEMVHADITGMRKAREVEVEGLFSTQ-------ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNS 300 (304)
Q Consensus 239 l~dkl~~el~~l~~t~~ae~e~l~~~q-------~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~ 300 (304)
..+.|+.++.+.....++.+..|...+ ..|+.+..++++.+..-..+.+.|+++|+.+.+..
T Consensus 111 ~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I 179 (184)
T PF05791_consen 111 IIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEI 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 334455555555555555555555544 55555666666666666666777777777776543
No 176
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=75.45 E-value=33 Score=25.93 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039489 278 GLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 278 ~I~~L~~E~~eLe~~l~~l 296 (304)
.+.+|+.|.+.|.+.++.+
T Consensus 48 e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 48 ENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555444
No 177
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.35 E-value=12 Score=38.36 Aligned_cols=44 Identities=11% Similarity=0.259 Sum_probs=25.6
Q ss_pred CCcccCCCceeccccccccCCCC--CHHHHHHHHHHHhccCCCCCC
Q 039489 121 HPHVTPSGLVSIPYLQNWIYPSS--NLVDLVRELSACFSREPPLYS 164 (304)
Q Consensus 121 ~~~Vd~~G~v~lpyL~~W~~~~s--~L~~Lv~~l~~~F~~~pPl~~ 164 (304)
...-|.+|.+.+=+=+.-....+ .=-.+++.|-.+|+-.|++--
T Consensus 185 p~~~~~~g~vtl~f~~~~t~~~sqQqq~n~~~~l~~~lg~~pn~tv 230 (508)
T KOG3091|consen 185 PSRTDDEGFVTLVFRSPITNQNSQQQQDNILEQLHSSLGGQPNVTV 230 (508)
T ss_pred CCccCCCCeeeeeccCccccCChhhhhhhhhhhhhhhhcCCCCccc
Confidence 45557778776533222222122 223477888888888888754
No 178
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=75.31 E-value=16 Score=41.28 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 240 VEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 240 ~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
.++|+.|.+.|..+.++-++.|..++.+..+.+..|++--.+|..=.++|++.+..+..+
T Consensus 1691 Ae~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1691 AEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHINER 1750 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhhh
Confidence 566677777777777777777777776666666555554444444444444444443333
No 179
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=75.20 E-value=30 Score=32.03 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 241 EMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 241 dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
+.|-+++-+-....+...+++.+.-+++..-.++|++.|..|+.+..+++...+.+.
T Consensus 84 E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ 140 (225)
T COG1842 84 EDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALK 140 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555566666666677777777777777766665553
No 180
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=75.19 E-value=42 Score=32.42 Aligned_cols=47 Identities=28% Similarity=0.485 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 241 EMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQ 291 (304)
Q Consensus 241 dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~ 291 (304)
+.+..+++.+....+++.+.|.+ |+++.+++++.++.|+.|.++|++
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~----LE~e~~~l~~el~~le~e~~~l~~ 92 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEE----LEKEREELDQELEELEEELEELDE 92 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433 333344444444444444444433
No 181
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=74.96 E-value=28 Score=32.88 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 227 QTEVFKRNAVNKLVEMVHADITGMRKAREVEVEG 260 (304)
Q Consensus 227 a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~ 260 (304)
...+-....+++..+.++.+++.+......|.+|
T Consensus 138 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g 171 (301)
T PF14362_consen 138 ARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFG 171 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3344444566666677777777777777777777
No 182
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=74.78 E-value=50 Score=29.01 Aligned_cols=55 Identities=22% Similarity=0.268 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 244 HADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 244 ~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
..|+++...+.++..-.|.-.+ ..|++++++|++-++.|++=.+..|..+..+..
T Consensus 76 E~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~v 133 (159)
T PF05384_consen 76 EEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGV 133 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544444443 778888888888888888777776666655543
No 183
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=74.70 E-value=25 Score=31.59 Aligned_cols=33 Identities=9% Similarity=0.164 Sum_probs=26.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 251 RKAREVEVEGLFSTQALLRRREEEIDRGLKELQ 283 (304)
Q Consensus 251 ~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~ 283 (304)
..++-++.....+++++|+.=..+++++++-|+
T Consensus 106 ~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE 138 (189)
T TIGR02132 106 QEQAPALKKDVTKLKQDIKSLDKKLDKILELLE 138 (189)
T ss_pred HhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 335556777777888888888999999998888
No 184
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=74.69 E-value=27 Score=33.83 Aligned_cols=29 Identities=14% Similarity=0.400 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 268 LRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 268 L~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
++++-++++..|+....++.+++.+|+.+
T Consensus 230 ~~~~l~~l~~~I~~~~~~k~e~~~~I~~a 258 (312)
T smart00787 230 LEEELQELESKIEDLTNKKSELNTEIAEA 258 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444433
No 185
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=74.66 E-value=9.7 Score=29.75 Aligned_cols=43 Identities=14% Similarity=0.164 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHH
Q 039489 240 VEMVHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKEL 282 (304)
Q Consensus 240 ~dkl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L 282 (304)
-++|..++.+|.++.+++.+.....+ ..|+++.+-|.+-|..|
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666555555 55666666666666665
No 186
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=74.64 E-value=38 Score=26.32 Aligned_cols=18 Identities=11% Similarity=0.475 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039489 235 AVNKLVEMVHADITGMRK 252 (304)
Q Consensus 235 ~lsal~dkl~~el~~l~~ 252 (304)
+++++.|.++.|.+.+..
T Consensus 1 Rl~elLd~ir~Ef~~~~~ 18 (79)
T PF08581_consen 1 RLNELLDAIRQEFENLSQ 18 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 356667777777666655
No 187
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=74.52 E-value=23 Score=30.79 Aligned_cols=55 Identities=27% Similarity=0.337 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhc
Q 039489 245 ADITGMRKAREVEVEGLFSTQALLRRREEEIDRGL-------KELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 245 ~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I-------~~L~~E~~eLe~~l~~l~~~ 299 (304)
.|.+++....++|.....+|..-|.++.++|+=.+ ..|++|+.+-|+++..+.++
T Consensus 3 eE~~~~~~~l~~Ek~eHaKTK~lLake~EKLqfAlgeieiL~kQl~rek~afe~a~~~vk~k 64 (153)
T PF15175_consen 3 EEFEAVEKKLEEEKAEHAKTKALLAKESEKLQFALGEIEILSKQLEREKLAFEKALGSVKSK 64 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666677777777777777777665443 45666777777766655443
No 188
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=74.47 E-value=31 Score=32.05 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 246 DITGMRKAREVEVEGLFSTQALL---RRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 246 el~~l~~t~~ae~e~l~~~q~eL---~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
-|++.++..+++++...++-++| .+..+.|+..|...+.|++..+..+..+.
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~ 87 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLY 87 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666666666 44455677888888888888877777664
No 189
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=74.37 E-value=25 Score=37.69 Aligned_cols=66 Identities=15% Similarity=0.168 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 232 KRNAVNKLVEMVHADI---------------TGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 232 r~s~lsal~dkl~~el---------------~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
+..++.+.+|-++.|+ ..+..+..++.++|++.++.+.++++.+...|+.|++..++-|.+++.+
T Consensus 552 ~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel 631 (961)
T KOG4673|consen 552 QALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEEL 631 (961)
T ss_pred HHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544 2233355667778888889999999999999999999999999888877
Q ss_pred h
Q 039489 297 L 297 (304)
Q Consensus 297 ~ 297 (304)
.
T Consensus 632 ~ 632 (961)
T KOG4673|consen 632 I 632 (961)
T ss_pred H
Confidence 4
No 190
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=74.36 E-value=12 Score=31.78 Aligned_cols=13 Identities=31% Similarity=0.519 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 039489 284 DEREGLEQQLQIV 296 (304)
Q Consensus 284 ~E~~eLe~~l~~l 296 (304)
.++++|...++.|
T Consensus 107 ~eEe~L~~~le~l 119 (141)
T PF13874_consen 107 PEEEELRKRLEAL 119 (141)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 191
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=74.31 E-value=24 Score=42.01 Aligned_cols=67 Identities=22% Similarity=0.312 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 232 KRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
..+++.++.+ ...+++...+..+.+++.+.....++.++-.++++..+.|+.+++||..+|..++..
T Consensus 1475 l~~~lee~~e-~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~ 1541 (1930)
T KOG0161|consen 1475 LKNALEELLE-QLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAA 1541 (1930)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 445566666677777777777778888888888888888888888888888877663
No 192
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=74.12 E-value=4.8 Score=33.58 Aligned_cols=62 Identities=19% Similarity=0.346 Sum_probs=47.1
Q ss_pred ccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc--cccCCCCCHHHHHHHHHH
Q 039489 87 TYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ--NWIYPSSNLVDLVRELSA 154 (304)
Q Consensus 87 ~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~--~W~~~~s~L~~Lv~~l~~ 154 (304)
+-||=+.+-++++||+.||.+-|.-. . ....+|-.+|.||.-.|. .|.. .+.+-..+-.+..
T Consensus 10 te~ill~~~f~~~fp~~ppf~rvv~p---~--~~~Gyvl~ggAIcmellt~qgwss-ay~Ve~vi~qiaa 73 (122)
T KOG0897|consen 10 TENILLLDIFDDNFPFMPPFPRVVKP---L--EDEGYVLEGGAICMELLTKQGWSS-AYEVERVIMQIAA 73 (122)
T ss_pred CceeEeeeecccCCCCCCCcceeeee---c--ccCCEEecchhhHHHHHccccccc-hhhHHHHHHHHHH
Confidence 44677788999999999999988622 1 347889999999988886 8987 6666665555544
No 193
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=74.08 E-value=31 Score=27.54 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 039489 278 GLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 278 ~I~~L~~E~~eLe~~l~~l~~ 298 (304)
.|.+|+.--.+|+.-...|+.
T Consensus 74 ~V~~LE~~v~~LD~ysk~LE~ 94 (99)
T PF10046_consen 74 QVTELEQTVYELDEYSKELES 94 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 194
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=74.04 E-value=21 Score=32.92 Aligned_cols=60 Identities=20% Similarity=0.245 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 235 AVNKLVEMVHADITGM---RKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 235 ~lsal~dkl~~el~~l---~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
..++..+++..+-+++ .++.++|++.+..-...|++.-+..++.+.+|+++.+++++.-+
T Consensus 39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~ 101 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQ 101 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333 33445555555555555555555666666666666555554333
No 195
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=73.97 E-value=36 Score=28.51 Aligned_cols=13 Identities=8% Similarity=0.470 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 039489 243 VHADITGMRKARE 255 (304)
Q Consensus 243 l~~el~~l~~t~~ 255 (304)
++.+++.+..+++
T Consensus 35 l~~el~~l~~~r~ 47 (120)
T PF12325_consen 35 LQEELARLEAERD 47 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444433333
No 196
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=73.92 E-value=9.1 Score=35.72 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 238 KLVEMVHADITGMRKA-REVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 238 al~dkl~~el~~l~~t-~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
.+.+-|-.++++...+ ..|+.++.+++ +++++++.++++.+++|+++.++|+.-|++...
T Consensus 4 RI~eILPqRIQEw~~~p~~A~E~~r~~L-e~Ir~kq~~v~~~l~eLe~~~~el~~~i~~~k~ 64 (236)
T PF12269_consen 4 RIYEILPQRIQEWQLSPCVAEEQNRKLL-EEIRKKQQKVRNRLQELEKRFKELEAIIARAKQ 64 (236)
T ss_pred HHHHHChHHHHHhcCCCchhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555566665553 33444444444 488888899999999999999999988887643
No 197
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=73.91 E-value=32 Score=28.96 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 235 AVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGL 289 (304)
Q Consensus 235 ~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eL 289 (304)
.+++++ .+..+++++....++.++.+..+...-..-+...-++|.+|.++.+..
T Consensus 4 ~~kEi~-~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkDisdkIdkC 57 (121)
T PF03310_consen 4 IIKEIS-ELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKDISDKIDKC 57 (121)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 355555 566666666666666666655554433333445556677777777766
No 198
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=73.90 E-value=31 Score=34.21 Aligned_cols=46 Identities=22% Similarity=0.287 Sum_probs=35.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 253 AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 253 t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
...+-+..+.....+|...-+++...|+.|.+.+..||++++.+..
T Consensus 47 ~L~~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~ 92 (384)
T PF03148_consen 47 RLRQRIRDIRFWKNELERELEELDEEIDLLEEEKRRLEKALEALRK 92 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344444455555899999999999999999999999999988753
No 199
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=73.87 E-value=19 Score=35.13 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 227 QTEVFKRNAVNKLVEMVHA----DITGMRKAREVEVEGLFSTQ-ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 227 a~E~~r~s~lsal~dkl~~----el~~l~~t~~ae~e~l~~~q-~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
+++++..-.-++.+.+++. -+-+++...++.+|...+.= ==-+++-+++-+-|.+|+++...|+++|..++.
T Consensus 241 ae~~~~e~~~S~efak~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 241 AEEAYAEVFASEENAKVHGKFINALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455555444444444444 44566777777777766632 001112223444455555555555555555544
No 200
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=73.85 E-value=22 Score=38.12 Aligned_cols=67 Identities=13% Similarity=0.114 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 233 RNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 233 ~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
-++|.+-..+++.-+..-+.+..+..+.+...|.|+..-+..+..-..+.++++.+++++++..+++
T Consensus 706 ~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~q~lq~~ll~ 772 (961)
T KOG4673|consen 706 LSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQELQEVLLH 772 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3455555556666555555555555666666666666666555555555556666666666655443
No 201
>PF15556 Zwint: ZW10 interactor
Probab=73.84 E-value=66 Score=29.66 Aligned_cols=66 Identities=21% Similarity=0.209 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 228 TEVFKRNAVNKLVEMVHADITGMRKARE-----------VEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 228 ~E~~r~s~lsal~dkl~~el~~l~~t~~-----------ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
+.+.|+-.|.+..+++++.-+..+.... .-+..|.+.-+|+++|+..-...++.|.+|.+.|+.+.
T Consensus 95 EaqrK~~qLqeA~eqlqaKKqva~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa 171 (252)
T PF15556_consen 95 EAQRKRTQLQEALEQLQAKKQVAMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQA 171 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777665553333222 12223333335666666666666666666666665543
No 202
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=73.80 E-value=42 Score=27.69 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 260 GLFSTQALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 260 ~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
++.+--++|.++...++..|+.|++.++-++
T Consensus 61 ~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~ 91 (117)
T COG2919 61 AQQAELEKLSARNTALEAEIKDLKDGRDYIE 91 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 3333335555555555555555555533333
No 203
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=73.60 E-value=25 Score=34.80 Aligned_cols=41 Identities=22% Similarity=0.227 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 039489 233 RNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREE 273 (304)
Q Consensus 233 ~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~ 273 (304)
+..+.++.++++.+++.+....+.+.+.+.+..++|++.-+
T Consensus 288 ~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~ 328 (444)
T TIGR03017 288 QAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALE 328 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555444444444444444433344433333
No 204
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=73.46 E-value=19 Score=33.95 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=35.0
Q ss_pred CChHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 039489 225 EDQTEVFKRNAVNKLVE-----MVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRG 278 (304)
Q Consensus 225 ~~a~E~~r~s~lsal~d-----kl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~ 278 (304)
+..+|++++-+.. |.+ -++.++.+|+...+...+++..+++++...+++|+.+
T Consensus 156 d~dvevLL~~ae~-L~~vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~ 213 (259)
T PF08657_consen 156 DVDVEVLLRGAEK-LCNVYPLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERM 213 (259)
T ss_pred cCCHHHHHHHHHH-HHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666553322 222 4667888888888888888888887777776666655
No 205
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.36 E-value=33 Score=33.02 Aligned_cols=57 Identities=14% Similarity=0.220 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 235 AVNKLVEMVHADITGMRKAREVEVEGLFSTQ-------ALLRRREEEIDRGLKELQDEREGLEQ 291 (304)
Q Consensus 235 ~lsal~dkl~~el~~l~~t~~ae~e~l~~~q-------~eL~~~~~~l~~~I~~L~~E~~eLe~ 291 (304)
.|++.+++++-.+..|.++..+.-+.+..+| .+|+.....+.+++++++.|...+..
T Consensus 126 ~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~ 189 (300)
T KOG2629|consen 126 QLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNTLVQLSRNIEKLESEINTIKQ 189 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4455555555554444443333333333333 33333333555566666666665553
No 206
>PLN02372 violaxanthin de-epoxidase
Probab=73.30 E-value=31 Score=34.81 Aligned_cols=14 Identities=14% Similarity=0.404 Sum_probs=11.1
Q ss_pred CCceeccccccccC
Q 039489 127 SGLVSIPYLQNWIY 140 (304)
Q Consensus 127 ~G~v~lpyL~~W~~ 140 (304)
.|+.||-|-++|.-
T Consensus 275 ~~NeyLhyqddWyI 288 (455)
T PLN02372 275 HDNEYLHYQDDWYI 288 (455)
T ss_pred CCcceeecccceEE
Confidence 37778889999984
No 207
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=73.27 E-value=46 Score=29.17 Aligned_cols=58 Identities=22% Similarity=0.209 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 240 VEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 240 ~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
.+.|+.+...|..+.+.+.+...+.+.+|.+-++.++...+.|..+.+.|+.....|.
T Consensus 52 ~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 52 LELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLE 109 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555444444455555455555555555555555555554444
No 208
>PRK09039 hypothetical protein; Validated
Probab=73.23 E-value=44 Score=32.64 Aligned_cols=22 Identities=9% Similarity=0.001 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 039489 244 HADITGMRKAREVEVEGLFSTQ 265 (304)
Q Consensus 244 ~~el~~l~~t~~ae~e~l~~~q 265 (304)
+.++..|+.+-+++.+.+.+++
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le 157 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALE 157 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444
No 209
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=73.23 E-value=23 Score=38.48 Aligned_cols=7 Identities=14% Similarity=0.244 Sum_probs=2.7
Q ss_pred HHHHHHh
Q 039489 17 QFLSSVL 23 (304)
Q Consensus 17 ~wL~~vl 23 (304)
+.|.+++
T Consensus 133 ~~i~~~i 139 (782)
T PRK00409 133 QEIHNCI 139 (782)
T ss_pred HHHHHHh
Confidence 3333333
No 210
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=73.10 E-value=26 Score=33.50 Aligned_cols=11 Identities=27% Similarity=0.664 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 039489 266 ALLRRREEEID 276 (304)
Q Consensus 266 ~eL~~~~~~l~ 276 (304)
+.+++++.+++
T Consensus 140 ~Kierrk~ElE 150 (338)
T KOG3647|consen 140 SKIERRKAELE 150 (338)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 211
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.98 E-value=37 Score=32.27 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
.+++++-++++..|++|+.|.++++.+|
T Consensus 69 ~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 69 DELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444
No 212
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=72.97 E-value=23 Score=31.56 Aligned_cols=55 Identities=4% Similarity=0.284 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 242 MVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 242 kl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
-|+.||.+.|....+-||.+.++..-+.+.=++|.+-|+.|++-...+++-...|
T Consensus 51 eLkNeLREVREELkEKmeEIKQIKdiMDKDFDKL~EFVEIMKeMQkDMDEKMDvL 105 (205)
T PF15079_consen 51 ELKNELREVREELKEKMEEIKQIKDIMDKDFDKLHEFVEIMKEMQKDMDEKMDVL 105 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHhhhHH
Confidence 5677777888888888888888888888888888888888777777776655444
No 213
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=72.92 E-value=18 Score=39.89 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFSTQ 265 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~~q 265 (304)
+.+..++.+.|+.+++++.+-+-..+...+
T Consensus 401 ~~kelE~k~sE~~eL~r~kE~Lsr~~d~aE 430 (1243)
T KOG0971|consen 401 LQKELEKKNSELEELRRQKERLSRELDQAE 430 (1243)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555554444444444
No 214
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=72.85 E-value=31 Score=32.83 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 039489 272 EEEIDRGLKELQDEREGLEQQLQIVLMNSDILE 304 (304)
Q Consensus 272 ~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~~ 304 (304)
...|++-+..+...++.|.+.|.+|+.++|+||
T Consensus 93 ~s~Leddlsqt~aikeql~kyiReLEQaNDdLE 125 (333)
T KOG1853|consen 93 ESQLEDDLSQTHAIKEQLRKYIRELEQANDDLE 125 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 334455555555555556666666666666554
No 215
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=72.84 E-value=17 Score=38.88 Aligned_cols=40 Identities=8% Similarity=0.192 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEI 275 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l 275 (304)
+.++..+++.+++.+....+.+.+...+.++.|++.-+++
T Consensus 325 i~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~ 364 (754)
T TIGR01005 325 LADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQL 364 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444334444444433
No 216
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=72.79 E-value=35 Score=30.95 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=20.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 255 EVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 255 ~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
++|++.|+..=..|+.+...|-..-+.|++|...|...++.|
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~L 107 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETL 107 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444555554444444444
No 217
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=72.62 E-value=21 Score=30.86 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHH------------------------------------
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFSTQ------ALLRRREE------------------------------------ 273 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~~q------~eL~~~~~------------------------------------ 273 (304)
+.+....+++.++.|..+...+...+.+++ ..|+...+
T Consensus 11 l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~~ae~ 90 (145)
T COG1730 11 LAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAEK 90 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCceeeee
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 039489 274 EIDRGLKELQDEREGLEQQLQIVLMNSDIL 303 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~ 303 (304)
..++.|+.|++++++|++.++.+..+.+-|
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l 120 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAEL 120 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 218
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=72.13 E-value=29 Score=36.58 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 246 DITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 246 el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
|++..|+..+.||+.+...++||++.-.+-+-.+..|+.+.+.-+.++.++...
T Consensus 97 ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 97 ELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 445555556666666666667777776666666777777777777777776544
No 219
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=72.08 E-value=37 Score=34.03 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
+-+..+.+++++|++=+..+.|||.=...++++.|...-+-=...|-.|++|.+-+|..+
T Consensus 281 esye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeerv 340 (455)
T KOG3850|consen 281 ESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERV 340 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777777666666655554444433444444444444444433
No 220
>PF15463 ECM11: Extracellular mutant protein 11
Probab=72.07 E-value=30 Score=29.36 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQ 292 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~ 292 (304)
-..+.++-..-++.|+..+.+....-...+.++++|.+.|+.-.+.|.++.+++...
T Consensus 78 Gd~~l~qf~~l~~kl~~~R~~~r~~~~~fe~eI~~R~eav~~~~~~l~~kL~~mk~~ 134 (139)
T PF15463_consen 78 GDWFLEQFSELMQKLKEARRKLRKKFAVFEDEINRRAEAVRAQGEQLDRKLEKMKEG 134 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555566666666666666667777777777777777777777666543
No 221
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=71.97 E-value=19 Score=38.04 Aligned_cols=43 Identities=21% Similarity=0.214 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 249 GMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQ 291 (304)
Q Consensus 249 ~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~ 291 (304)
+.++......+.+.++|+||-.-+-+.++.+++|++|..||.+
T Consensus 223 E~~K~~vs~~e~i~~LQeE~l~tQ~kYQreLErlEKENkeLr~ 265 (980)
T KOG0447|consen 223 EQQKRKVSDKEKIDQLQEELLHTQLKYQRILERLEKENKELRK 265 (980)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3444555566677788889998999999999999999999873
No 222
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=71.84 E-value=22 Score=26.69 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039489 268 LRRREEEIDRGLKELQDEREGLEQQLQIVLMNS 300 (304)
Q Consensus 268 L~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~ 300 (304)
++++-.++|.....++.+.+.+.++|.++.+++
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~ 50 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIKSNT 50 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666778888888888888888888887765
No 223
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=71.76 E-value=32 Score=38.42 Aligned_cols=65 Identities=20% Similarity=0.343 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 039489 232 KRNAVNKLVEMVHADITGMRKAREVEVEGLFS---TQALLRRREEEIDRGL----KELQDEREGLEQQLQIV 296 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~---~q~eL~~~~~~l~~~I----~~L~~E~~eLe~~l~~l 296 (304)
++..+.+..+++..+++.+.+.....-+.+.. +.++|+.+.+++++.| .+|+..++++.+.-..|
T Consensus 442 e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l 513 (1041)
T KOG0243|consen 442 EKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATL 513 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666655555555442 1245555554444444 44444444444444443
No 224
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=71.76 E-value=23 Score=33.02 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 229 EVFKRNAVNKLVEMVHADI----TGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 229 E~~r~s~lsal~dkl~~el----~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
|.-||-=|....+.|+..+ .+.+.+.-..++.-......|+.....-...|++|++|..+|+++|+.|.
T Consensus 67 Ek~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 67 EKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444566666666554 22222345566666667788988889999999999999999999998765
No 225
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=71.53 E-value=39 Score=27.98 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 261 LFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 261 l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
+++.+..-...+..+-+-+.+|.+....||..+..+
T Consensus 24 ~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~l 59 (112)
T PF07439_consen 24 IRRSEDRSAASRASMHRRLDELVERVTTLESSVSTL 59 (112)
T ss_pred HHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444444444433
No 226
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.84 E-value=14 Score=38.60 Aligned_cols=36 Identities=17% Similarity=0.403 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSD 301 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~ 301 (304)
.+++...+.+++.|+.|+.|.++.|.+++.+..+.|
T Consensus 283 ~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d 318 (581)
T KOG0995|consen 283 SQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKEND 318 (581)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666666666666666655544
No 227
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=70.76 E-value=57 Score=26.68 Aligned_cols=15 Identities=20% Similarity=0.109 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 039489 241 EMVHADITGMRKARE 255 (304)
Q Consensus 241 dkl~~el~~l~~t~~ 255 (304)
.||++....|++..-
T Consensus 8 sKLraQ~~vLKKaVi 22 (102)
T PF10205_consen 8 SKLRAQNQVLKKAVI 22 (102)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 228
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=70.70 E-value=50 Score=25.99 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 039489 283 QDEREGLEQQLQI 295 (304)
Q Consensus 283 ~~E~~eLe~~l~~ 295 (304)
+...+.|+..+..
T Consensus 78 ~~q~~~l~~~l~~ 90 (127)
T smart00502 78 EQQLESLTQKQEK 90 (127)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 229
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=70.18 E-value=46 Score=32.13 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
.+|+.+..++..-|..|+.++.++...++.|..
T Consensus 58 ~elr~~rdeineev~elK~kR~ein~kl~eL~~ 90 (294)
T COG1340 58 QELREERDEINEEVQELKEKRDEINAKLQELRK 90 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888888888888887777644
No 230
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=69.98 E-value=38 Score=32.23 Aligned_cols=63 Identities=14% Similarity=0.260 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCCCCCCCC---CchhhHHHHHHHHHHHHhCCCCccccceeecCCCc-eeeEEEEEe
Q 039489 13 QQIQQFLSSVLSQRGPSALPY---AEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGR-SVNLLQADG 77 (304)
Q Consensus 13 ~~~~~wL~~vl~~~~~~a~~Y---~~~~k~~v~~dv~~vl~~yp~L~p~~~~ft~~dG~-~~~LL~L~G 77 (304)
..+..||-.-..+. ..++. ++..|..|-+.+..++..--.++-.+..-.--||- .+.||.+.-
T Consensus 23 AeiL~WLv~rydP~--~~i~~~i~tE~dRV~Fik~v~~~~~tKa~IKLN~KkLY~ADGyAVkELLKia~ 89 (267)
T PF10234_consen 23 AEILRWLVKRYDPD--ADIPGDIDTEQDRVFFIKSVAEFMATKARIKLNPKKLYQADGYAVKELLKIAS 89 (267)
T ss_pred HHHHHHHHHHcCCC--CCCCCcCCcHHHHHHHHHHHHHHHHHHhheeecHHHHHHhhHHHHHHHHHHHH
Confidence 45677777666542 22222 23456666666666666544455544333333443 234444433
No 231
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=69.89 E-value=58 Score=27.24 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 236 VNKLVEMVHADITGMRKAREVE---VEGLFSTQALLRRREEEIDRGLKELQDEREG 288 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae---~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~e 288 (304)
+.+.-|.+..|+-.+....++. .+.+..++.+++.=+.+.+..++-|.+|.++
T Consensus 42 l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ 97 (120)
T PF12325_consen 42 LEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEE 97 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3333444445554444444222 2223333344444444444444444443333
No 232
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=69.87 E-value=38 Score=36.57 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 239 LVEMVHADITGMRK---AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 239 l~dkl~~el~~l~~---t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
....++.|++.++. ..++|.|.|..+.++|++..+.++.....|++|..|+..+-+++..
T Consensus 35 ~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~ 97 (717)
T PF09730_consen 35 RILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQ 97 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445556555544 6778999999999999999888888888888888888776666543
No 233
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=69.86 E-value=40 Score=28.84 Aligned_cols=7 Identities=43% Similarity=0.601 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 039489 282 LQDEREG 288 (304)
Q Consensus 282 L~~E~~e 288 (304)
|+++.++
T Consensus 85 LEeele~ 91 (143)
T PF12718_consen 85 LEEELEE 91 (143)
T ss_pred HHHHHHH
Confidence 3333333
No 234
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=69.86 E-value=30 Score=29.47 Aligned_cols=44 Identities=14% Similarity=0.245 Sum_probs=37.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 253 AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 253 t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
..++.++.+.++++|++.-.+++.+.|++.+...+.++..|..+
T Consensus 98 see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~i 141 (144)
T PF11221_consen 98 SEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIREI 141 (144)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888999999999999999999999998888888887654
No 235
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=69.81 E-value=25 Score=27.40 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=18.7
Q ss_pred ccceeEEEeecccCCCCCCeEEEecC
Q 039489 87 TYNIPVIIWLMESYPRHPPCVYVNPT 112 (304)
Q Consensus 87 ~ynIPi~Iwlp~~YP~~pPivyV~pt 112 (304)
...+=+.|-+|.+||..+|.+.|.-.
T Consensus 48 ~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 48 FPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp SEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred ceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 44566789999999999999999744
No 236
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=69.62 E-value=24 Score=35.65 Aligned_cols=63 Identities=24% Similarity=0.299 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 237 NKLVEMVHADITGMRKAREVEVEGLFSTQALLRRR-----EEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 237 sal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~-----~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
.+.+|-+..++++..+..+.|.|.-.+..+.|++. .+++.+.++.+.+|.++|.+++..+++.
T Consensus 138 ~eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~ 205 (447)
T KOG2751|consen 138 EECMDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKE 205 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666655555543 2244555555556666666666555544
No 237
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.61 E-value=59 Score=30.95 Aligned_cols=65 Identities=11% Similarity=0.171 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 232 KRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
|-.+|+.+++-=+.-|+.+.+...++-+....++ ++|..-..+++.++..|+.++.|++..+..+
T Consensus 135 RvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~ 202 (265)
T COG3883 135 RVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAAL 202 (265)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777666544444443333332222222222 3444444455555555555555555444433
No 238
>PRK06328 type III secretion system protein; Validated
Probab=69.59 E-value=45 Score=30.57 Aligned_cols=67 Identities=19% Similarity=0.261 Sum_probs=42.7
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 227 QTEVFKR-NAVNKLVEMVHADITGMRKAREVEVEGLFST--QALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 227 a~E~~r~-s~lsal~dkl~~el~~l~~t~~ae~e~l~~~--q~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
..+++-+ --=+++.++++.+.+++....++|.+.+.+. ++-.++|.++..+.+..|..+..+++..+
T Consensus 21 ~~~~~~~~~~A~~il~~a~~~ae~i~~ea~~e~E~i~eeA~~eGy~eG~~~~~~~~~~l~~~~~~~~~~~ 90 (223)
T PRK06328 21 SPEAFSALLDAQELLEKTKEDSEAYTQETHEECEKLREEAKNQGFKEGSKAWSKQLAFLEEETQKLREQV 90 (223)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444432 2234678888999998888888888888753 35555665555555656665555555443
No 239
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=69.57 E-value=36 Score=28.20 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 039489 278 GLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 278 ~I~~L~~E~~eLe~~l~~l~ 297 (304)
-|+.|+.+.++|+..|..|.
T Consensus 97 ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 97 EIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555443
No 240
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=69.22 E-value=44 Score=24.76 Aligned_cols=18 Identities=28% Similarity=0.560 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039489 272 EEEIDRGLKELQDEREGL 289 (304)
Q Consensus 272 ~~~l~~~I~~L~~E~~eL 289 (304)
...|...|+.|+.+.+++
T Consensus 41 n~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 41 NRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334555555555555544
No 241
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=69.16 E-value=62 Score=33.31 Aligned_cols=51 Identities=8% Similarity=0.229 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 246 DITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 246 el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
++..++....+....+.+++.+|+..++..++-++.|++-+++|..+-+.|
T Consensus 68 ~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~L 118 (475)
T PRK10361 68 EVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENL 118 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555555555555555555665555555555444
No 242
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=69.15 E-value=45 Score=30.25 Aligned_cols=68 Identities=13% Similarity=0.151 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 227 QTEVFKRNAVNKLVE---MVHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 227 a~E~~r~s~lsal~d---kl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
++.....+.|.+-.+ +|+.||.-.+.+.++-.+....++ ..|+.++.....-|+.|++....|++..+
T Consensus 112 AQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 112 AQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555555555444 456677666666655555555555 56777777777788888887777777654
No 243
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.07 E-value=32 Score=32.35 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcc
Q 039489 266 ALLRRREEEIDRGLKELQ----DEREGLEQQLQIVLMNS 300 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~----~E~~eLe~~l~~l~~~~ 300 (304)
.+|..+.+++++-+...+ .....||++++.|.+-+
T Consensus 67 ~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~a 105 (247)
T COG3879 67 NTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLA 105 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHh
Confidence 556666666666666666 55556666666665543
No 244
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=68.98 E-value=21 Score=29.48 Aligned_cols=25 Identities=12% Similarity=0.251 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
.||.+|-..++..+..|+....|++
T Consensus 43 DElV~Rv~~lEs~~~~lk~dVsemK 67 (112)
T PF07439_consen 43 DELVERVTTLESSVSTLKADVSEMK 67 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhcc
Confidence 4455555555555555555544443
No 245
>PRK04654 sec-independent translocase; Provisional
Probab=68.94 E-value=68 Score=29.57 Aligned_cols=9 Identities=0% Similarity=0.254 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 039489 275 IDRGLKELQ 283 (304)
Q Consensus 275 l~~~I~~L~ 283 (304)
++..+++++
T Consensus 77 lk~~~~el~ 85 (214)
T PRK04654 77 LRNTQQQVE 85 (214)
T ss_pred HHHHHHHHH
Confidence 333333333
No 246
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=68.94 E-value=15 Score=39.95 Aligned_cols=6 Identities=17% Similarity=0.534 Sum_probs=2.7
Q ss_pred eecccC
Q 039489 95 WLMESY 100 (304)
Q Consensus 95 wlp~~Y 100 (304)
.+-++|
T Consensus 413 lirnDy 418 (1102)
T KOG1924|consen 413 LIRNDY 418 (1102)
T ss_pred HHhhhh
Confidence 344455
No 247
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=68.87 E-value=58 Score=27.55 Aligned_cols=58 Identities=22% Similarity=0.180 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFS--TQALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~--~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
=.++.+..+.+.+.++...+++.+...+ -++-++++.++....+..+..+.+++.+.+
T Consensus 15 A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~~~~~~~~~~~~~~ 74 (166)
T TIGR02499 15 AQAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLAEWQQEAEQLEASL 74 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888888888777766443 225566666666666666655555544443
No 248
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=68.62 E-value=43 Score=35.36 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 271 REEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 271 ~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
+++++++.++.++.++++.++++..+
T Consensus 263 ~r~~Le~ei~~le~e~~e~~~~l~~l 288 (650)
T TIGR03185 263 EREQLERQLKEIEAARKANRAQLREL 288 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555444
No 249
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=68.58 E-value=18 Score=30.22 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039489 263 STQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNS 300 (304)
Q Consensus 263 ~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~ 300 (304)
.+.+-|+++.+++++.|++|++.++.|+..+.......
T Consensus 79 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~ 116 (133)
T cd04787 79 MVRRLIEQRLAETERRIKELLKLRDRMQQAVSQWQQMP 116 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34466677777888888888888888877777665443
No 250
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=68.56 E-value=50 Score=32.56 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
.+..+....++..+..++.+.+++++++..+
T Consensus 89 ~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~l 119 (372)
T PF04375_consen 89 KQQQEQLQQLQQELAQLQQQLAELQQQLAAL 119 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444555555555555555544
No 251
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=68.55 E-value=81 Score=28.87 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=23.2
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 264 TQALLRRREE---EIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 264 ~q~eL~~~~~---~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
+++.|++.+- -|++.|+.-.+|.+||.+.+..|-.+
T Consensus 166 Lqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k 204 (207)
T PF05010_consen 166 LQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISK 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666655 44556666666777777777776543
No 252
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=68.53 E-value=52 Score=34.06 Aligned_cols=6 Identities=33% Similarity=0.551 Sum_probs=2.4
Q ss_pred HHHHHH
Q 039489 266 ALLRRR 271 (304)
Q Consensus 266 ~eL~~~ 271 (304)
.+|++.
T Consensus 333 ~eL~~~ 338 (582)
T PF09731_consen 333 QELKRQ 338 (582)
T ss_pred HHHHHH
Confidence 344443
No 253
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=68.48 E-value=58 Score=26.15 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 268 LRRREEEIDRGLKELQDEREGLEQ 291 (304)
Q Consensus 268 L~~~~~~l~~~I~~L~~E~~eLe~ 291 (304)
++++.+.++..+.++..+.++|+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF11740_consen 93 LEQERAAAEAELAEAEAQAEELEA 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 254
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=68.45 E-value=45 Score=36.55 Aligned_cols=27 Identities=37% Similarity=0.487 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc
Q 039489 277 RGLKELQDEREGLEQQLQIVLMNSDIL 303 (304)
Q Consensus 277 ~~I~~L~~E~~eLe~~l~~l~~~~~~~ 303 (304)
+.|+++++|++||++.++..+.+.|-+
T Consensus 670 ~q~eel~Ke~kElq~rL~~q~KkiDh~ 696 (988)
T KOG2072|consen 670 RQIEELEKERKELQSRLQYQEKKIDHL 696 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 455677777777777777777766643
No 255
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=68.35 E-value=31 Score=32.52 Aligned_cols=67 Identities=15% Similarity=0.168 Sum_probs=30.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 225 EDQTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 225 ~~a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
+.++|+.|-+. .+|+-++.+|.-+..+.-.+.+.+| .|=..-+.+|+..+++|++|+.|.+-++.-|
T Consensus 8 ~~~eed~rL~v-----~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPL 77 (277)
T PF15030_consen 8 EASEEDLRLRV-----QQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPL 77 (277)
T ss_pred cccchhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchH
Confidence 34566654321 2344444444444333333333333 3333334555566666666665555444433
No 256
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=68.30 E-value=23 Score=31.29 Aligned_cols=28 Identities=29% Similarity=0.499 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 269 RRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 269 ~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
+++.++|...++.|+.|.++|++.++.+
T Consensus 110 ~~e~~~l~~~~e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 110 KNQNESLQKRNEELEKELEKLRQRLSTI 137 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444333
No 257
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=68.30 E-value=49 Score=34.98 Aligned_cols=37 Identities=8% Similarity=0.054 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 039489 229 EVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ 265 (304)
Q Consensus 229 E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q 265 (304)
-..+-..+.+..++++.+.++|.+..++....+.++.
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~ 456 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLE 456 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555554444443333333
No 258
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=68.22 E-value=64 Score=26.96 Aligned_cols=64 Identities=14% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
+++...||..+++++.++.+.++..--..==.--.+.+++++.+..++...+.|....++|..+
T Consensus 31 ~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~e 94 (132)
T PF10392_consen 31 ISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSE 94 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 259
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=68.22 E-value=30 Score=30.22 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=13.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 253 AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREG 288 (304)
Q Consensus 253 t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~e 288 (304)
..+++++...+..++.+++.+++++.-++.+++.++
T Consensus 70 ~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~ 105 (157)
T PF14235_consen 70 AYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDH 105 (157)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 333333333333334444433333333333333333
No 260
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=68.20 E-value=19 Score=36.90 Aligned_cols=23 Identities=17% Similarity=0.033 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 039489 277 RGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 277 ~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
+..++++++.++||..++.|+.+
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Confidence 44444444444554444444443
No 261
>PF13125 DUF3958: Protein of unknown function (DUF3958)
Probab=68.01 E-value=64 Score=26.20 Aligned_cols=65 Identities=17% Similarity=0.123 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHH--H-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 234 NAVNKLVEMVHADIT--G-MRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 234 s~lsal~dkl~~el~--~-l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
++.+++.+.-|++-+ . ++...++.-.--.++.-+|+..++.|-+.-+.|-++.+.|--+.+.|..
T Consensus 31 rLF~ril~tWh~Dre~s~fF~n~~qe~~~ieRk~t~eLE~qkE~LlkEkR~L~d~E~~l~yq~q~L~r 98 (99)
T PF13125_consen 31 RLFNRILETWHGDREMSHFFMNMLQEAQHIERKLTFELEEQKETLLKEKRDLSDLENDLSYQQQQLAR 98 (99)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666665433 3 3445556556667788999999999999999999999999988887753
No 262
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=67.98 E-value=91 Score=27.90 Aligned_cols=69 Identities=22% Similarity=0.225 Sum_probs=48.0
Q ss_pred ChHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 226 DQTEVFKR-NAVNKLVEMVHADITGMRKAREVEVEGLFS--TQALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 226 ~a~E~~r~-s~lsal~dkl~~el~~l~~t~~ae~e~l~~--~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
+..|++-. ..-.++.+..|.+.+.+.+..+++-+.+.+ -+.-+++-.++.+..+...+.+.++|+..+.
T Consensus 21 i~~e~L~~~~~a~~IL~~A~~qA~~Il~~Ae~eAe~l~~~a~e~a~~~~~q~a~~ll~~~~~~~e~l~~~l~ 92 (191)
T PF06188_consen 21 IRREQLAAQQQAREILEDARQQAEQILQQAEEEAEALLEQAYEQAEAQFWQQANALLQEWQQQREQLLQQLE 92 (191)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444432 334678889999999999999999998888 3344555556666677777777777766654
No 263
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=67.96 E-value=26 Score=28.04 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
..|+.+.+.++..|++|+.+.+++++.+..+..
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~ 98 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQE 98 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666665544
No 264
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=67.84 E-value=23 Score=36.40 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSD 301 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~ 301 (304)
..|++..++.-..+++|+.|.++.|.+|+.|.++.|
T Consensus 319 ~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d 354 (622)
T COG5185 319 NAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNID 354 (622)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344444444445556666666666666666666655
No 265
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=67.66 E-value=64 Score=29.42 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 268 LRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 268 L~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
+..+.-+++..+..|+.|.++|++.......+
T Consensus 187 ~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~~ 218 (221)
T PF05700_consen 187 LVSKNLEIEVACEELEQEIEQLKRKAAELKEN 218 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333355555555666666665555555444
No 266
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=67.47 E-value=44 Score=27.06 Aligned_cols=34 Identities=32% Similarity=0.421 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
.+|+-+=.+++.-++.|+.+.+.+++.+.-|.++
T Consensus 68 ~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 68 HDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666677777777777777766666543
No 267
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=67.47 E-value=49 Score=33.68 Aligned_cols=53 Identities=21% Similarity=0.217 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 246 DITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 246 el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
+|+.++.+.+++-..|.++-.+-++.+++.-+..++++++.+|-|+.++..++
T Consensus 27 qMK~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~~Cn~sm~ 79 (436)
T PF01093_consen 27 QMKTMMEKTEEEHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEEVCNESMM 79 (436)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888887777888887777778888888888887776554
No 268
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=67.43 E-value=84 Score=27.37 Aligned_cols=52 Identities=10% Similarity=0.082 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDE 285 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E 285 (304)
+.|.+-.+++..++++..+..++-.+.+.+.++.|++-+.+.++++++.+.+
T Consensus 49 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~e 100 (167)
T PRK08475 49 NFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKE 100 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445444444444444444444455555444444444444333
No 269
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=67.36 E-value=27 Score=28.79 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
++|.+.....++-|+.|+.++.=||+.+...
T Consensus 70 s~leak~k~see~IeaLqkkK~YlEk~v~ea 100 (114)
T KOG3501|consen 70 SHLEAKMKSSEEKIEALQKKKTYLEKTVSEA 100 (114)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555444433
No 270
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=67.33 E-value=51 Score=34.48 Aligned_cols=65 Identities=20% Similarity=0.297 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 234 NAVNKLVEMVHADITGMRKAREVE--------------VEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae--------------~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
.-+..-.++|+.|+++++.+.++- ...+..++ .-++++...+++.+.+|++|...|...|+.+
T Consensus 109 a~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~ 188 (546)
T KOG0977|consen 109 AKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARA 188 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 333444556666666666644433 22222233 3344555566666666666666666666665
Q ss_pred hh
Q 039489 297 LM 298 (304)
Q Consensus 297 ~~ 298 (304)
.+
T Consensus 189 r~ 190 (546)
T KOG0977|consen 189 RK 190 (546)
T ss_pred HH
Confidence 54
No 271
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=67.28 E-value=88 Score=28.53 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLK-------ELQDEREGLEQQLQIVL 297 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~-------~L~~E~~eLe~~l~~l~ 297 (304)
..+.+....++.+++.+++..++....-+..|.+....=..|++.-. +++....+|+.+|..++
T Consensus 139 ~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~ 209 (221)
T PF05700_consen 139 EQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLK 209 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666655555554444445333333223333333 34444444444444443
No 272
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=67.26 E-value=64 Score=29.25 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039489 277 RGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 277 ~~I~~L~~E~~eLe~~l~~l 296 (304)
+.|...++|..+||...+.|
T Consensus 108 ~eV~~Y~~KL~eLE~kq~~L 127 (195)
T PF10226_consen 108 QEVAQYQQKLKELEDKQEEL 127 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555444444
No 273
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=67.26 E-value=19 Score=33.16 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 271 REEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 271 ~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
++..+++.+..|++++++||..|..+..+
T Consensus 186 ek~~~~~~~k~le~~k~~Le~~ia~~k~K 214 (259)
T KOG4001|consen 186 EKTRATTEWKVLEDKKKELELKIAQLKKK 214 (259)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455555666666666666666555443
No 274
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=67.16 E-value=19 Score=30.24 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 265 QALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 265 q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
-.+|+++.+-|+.-|+.|++..+.++++++.|.++
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~ 106 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQSE 106 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888888888888888888888888777543
No 275
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=67.11 E-value=58 Score=29.23 Aligned_cols=44 Identities=20% Similarity=0.211 Sum_probs=21.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 253 AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 253 t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
..++.++.+...-.++....++|+..|.+|+.+..+++.....|
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444445555555555555555555544444
No 276
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=67.11 E-value=54 Score=25.03 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 237 NKLVEMVHADITGMRKAREVEVEGLFSTQALLRRR---EEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 237 sal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~---~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
-.+...+|.|=++++-..-++...+..+.+||..- .+...+.|.+|-+|++++.+++..+
T Consensus 7 P~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l 69 (70)
T PF08606_consen 7 PSLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAEL 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhc
Confidence 34566777777777777777777777777777664 4566677888888888888887764
No 277
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=66.92 E-value=42 Score=34.82 Aligned_cols=24 Identities=8% Similarity=0.185 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGL 289 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eL 289 (304)
.||.--+.-.++.|..|-+-...|
T Consensus 476 DEL~TTr~NYE~QLs~MSEHLasm 499 (518)
T PF10212_consen 476 DELETTRRNYEEQLSMMSEHLASM 499 (518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 278
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=66.88 E-value=83 Score=27.07 Aligned_cols=63 Identities=11% Similarity=0.067 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 234 NAVNKLVEMVHADITGMRK-------AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~-------t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
..+++..-+.-.+++.|.+ ..++.++.+.++|.+...-..++++.+.+=++..+.+.+.|+..
T Consensus 59 ~~laa~i~~~akqId~LIdsLP~~~~~~e~Ql~~i~kLq~en~e~~~el~~~v~~~e~Ll~~vq~~le~~ 128 (139)
T KOG1510|consen 59 QLLAADIAKKAKQIDTLIDSLPGEEGSAEAQLEKIKKLQEENEEVALELEELVSKGEKLLEQVQSLLEDI 128 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555554 56777788888888888888888887777777666666666543
No 279
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=66.87 E-value=69 Score=26.15 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccC
Q 039489 277 RGLKELQDEREGLEQQLQIVLMNSDILE 304 (304)
Q Consensus 277 ~~I~~L~~E~~eLe~~l~~l~~~~~~~~ 304 (304)
+++..-++-.+.|.+.+.+|.-+.|+||
T Consensus 89 ~mm~~qqqsidslsksvgklahkvdlle 116 (121)
T PF10669_consen 89 NMMKQQQQSIDSLSKSVGKLAHKVDLLE 116 (121)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444444455556666666666666654
No 280
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=66.86 E-value=57 Score=33.02 Aligned_cols=17 Identities=18% Similarity=0.374 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039489 280 KELQDEREGLEQQLQIV 296 (304)
Q Consensus 280 ~~L~~E~~eLe~~l~~l 296 (304)
++|..+..+|++.|+.+
T Consensus 227 ~eL~~~~~~L~~~Ias~ 243 (420)
T COG4942 227 EELRANESRLKNEIASA 243 (420)
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 33333344444444433
No 281
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=66.83 E-value=48 Score=32.34 Aligned_cols=66 Identities=9% Similarity=0.206 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEV-----------------EGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~-----------------e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
......+++|+-+-+.+.++..+.+ .+|..+-.+.+.+...|+..|+.|+++..|++.-+..|
T Consensus 26 DqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlL 105 (319)
T PF09789_consen 26 DQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLL 105 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 4445556777777777777776666 23333446667777788888888888888888887777
Q ss_pred hhc
Q 039489 297 LMN 299 (304)
Q Consensus 297 ~~~ 299 (304)
+++
T Consensus 106 R~~ 108 (319)
T PF09789_consen 106 REK 108 (319)
T ss_pred HHH
Confidence 653
No 282
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=66.72 E-value=36 Score=29.58 Aligned_cols=6 Identities=50% Similarity=0.739 Sum_probs=2.2
Q ss_pred HHHHHH
Q 039489 278 GLKELQ 283 (304)
Q Consensus 278 ~I~~L~ 283 (304)
.|+.|+
T Consensus 59 ~i~~lq 64 (155)
T PF06810_consen 59 QIEELQ 64 (155)
T ss_pred HHHHHH
Confidence 333333
No 283
>PF15205 PLAC9: Placenta-specific protein 9
Probab=66.60 E-value=29 Score=26.41 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 261 LFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 261 l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
...+|.+|.-=++.++|-++-|+.|.+.|=..|+.+..|
T Consensus 20 hmav~~RLdviEe~veKTVEhLeaEvk~LLg~leelawn 58 (74)
T PF15205_consen 20 HMAVHSRLDVIEETVEKTVEHLEAEVKGLLGLLEELAWN 58 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334666677777777788888888888887777777554
No 284
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=66.48 E-value=65 Score=26.88 Aligned_cols=30 Identities=23% Similarity=0.583 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 267 LLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 267 eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
.|+++.+.|++.+++|+++.+++.++++.+
T Consensus 98 ~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~ 127 (140)
T PRK03947 98 ILDKRKEELEKALEKLEEALQKLASRIAQL 127 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444443
No 285
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=66.46 E-value=79 Score=29.82 Aligned_cols=63 Identities=14% Similarity=0.218 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 231 FKRNAVNKLVEMVH-ADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 231 ~r~s~lsal~dkl~-~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
.||.+-+.|..+-- .+-++-+...+.+|..|..-.+.|..+.+.|.++=+.|--|..||...+
T Consensus 71 ~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~l 134 (292)
T KOG4005|consen 71 QRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSEL 134 (292)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 35555555543322 2233333344444444444444444444444444443433333333333
No 286
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=66.42 E-value=93 Score=27.57 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
..|-++-+.|...|+.+. +.++.-..+.++.++.....+++.+.++.|..=+.+|...+
T Consensus 5 ~~L~~~d~~L~~~L~~l~-~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 5 EDLIEADDELSSALEELQ-EHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555553 33333344445555555555566666666666666666555
No 287
>PRK09343 prefoldin subunit beta; Provisional
Probab=66.33 E-value=75 Score=26.33 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
.+|+.+.+-++.-|++|+++.+.|++.+..+..+
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~ 107 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKELQAK 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888888777777766543
No 288
>smart00302 GED Dynamin GTPase effector domain.
Probab=66.32 E-value=28 Score=27.40 Aligned_cols=58 Identities=14% Similarity=0.227 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 232 KRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
..-+++...+.++.+|-..... ++..+.|.+-.....++++++.++++.|++-.+.|.
T Consensus 33 ~~~lv~~~~~~lq~~L~~~L~~-~~~~~~LL~E~~~i~~kR~~~~~~l~~L~~A~~~l~ 90 (92)
T smart00302 33 MYLLVNESKDSLQNELLALLYK-EELLDELLEEDPEIASKRKELKKRLELLKKARQIIA 90 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-cccHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666666666444433 344566666667777777777777777777666653
No 289
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=66.24 E-value=22 Score=34.74 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 267 LLRRREEEIDRGLKELQDEREGLEQ 291 (304)
Q Consensus 267 eL~~~~~~l~~~I~~L~~E~~eLe~ 291 (304)
+|++..+++++..+.++.+.+++++
T Consensus 38 ~l~~~~~~~~~~~~~~~~~~~~~~~ 62 (378)
T TIGR01554 38 ELETDVEKLKEEIKLLEDAIADLEK 62 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444444
No 290
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=66.03 E-value=82 Score=28.53 Aligned_cols=40 Identities=5% Similarity=0.043 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 039489 240 VEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGL 279 (304)
Q Consensus 240 ~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I 279 (304)
.+++..+|++..+..++-.+.+...+.+|.+-+.+.++++
T Consensus 86 ~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii 125 (204)
T PRK09174 86 RDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIA 125 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344433333333333333333344444443333333
No 291
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=65.99 E-value=29 Score=30.25 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039489 265 QALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNS 300 (304)
Q Consensus 265 q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~ 300 (304)
...+++.-++.++.+++.+.|.++|++.-...+...
T Consensus 68 ~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~ 103 (157)
T PF14235_consen 68 RAAYQKKIARYKKEKARYKSEAEELEAKAKEAEAES 103 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 445555555555555555555555555555444433
No 292
>smart00030 CLb CLUSTERIN Beta chain.
Probab=65.93 E-value=39 Score=30.90 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 246 DITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 246 el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
+|+.++++.++|-..|.++-.+=++++++.-+..++.+.+.+|-++.+...
T Consensus 33 qMK~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~vCnet 83 (206)
T smart00030 33 QIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGVCNET 83 (206)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888899998888888888888888877777788888888877766443
No 293
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=65.87 E-value=34 Score=36.92 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=32.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 039489 258 VEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDILE 304 (304)
Q Consensus 258 ~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~~ 304 (304)
++.+..-+..|..+.+..++.|+.++++.+++++....+..+.|++|
T Consensus 529 ~~~~~~~~~~~~~~l~~kke~i~q~re~~~~~~k~~l~~e~~~~i~E 575 (809)
T KOG0247|consen 529 LMNAQLESQMLSSQLNDKKEQIEQLRDEIERLKKENLTTEYSIEILE 575 (809)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 33333333667777778888888888888888887776666665543
No 294
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=65.83 E-value=94 Score=28.61 Aligned_cols=29 Identities=28% Similarity=0.530 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
+.+....+.++..+..|.++...|+..++
T Consensus 81 ~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ 109 (247)
T PF06705_consen 81 NQISEKQEQLQSRLDSLNDRIEALEEEIQ 109 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555544444
No 295
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=65.82 E-value=62 Score=32.42 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 237 NKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 237 sal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
....+.|+.+++.+..+.+.....+.+....+...-.+++.-+..+++...+|+..++.+.
T Consensus 66 ~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls 126 (390)
T PRK10920 66 TATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDELQQKVATIS 126 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555554444444444444555555556666666666665553
No 296
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=65.58 E-value=51 Score=32.43 Aligned_cols=19 Identities=21% Similarity=0.590 Sum_probs=12.0
Q ss_pred ccccCCCCCHHHHHHHHHHHhc
Q 039489 136 QNWIYPSSNLVDLVRELSACFS 157 (304)
Q Consensus 136 ~~W~~~~s~L~~Lv~~l~~~F~ 157 (304)
.+|.. ..-+.|+.|...|.
T Consensus 57 ~~~~~---~~~eYv~~l~kaL~ 75 (342)
T PF06632_consen 57 KDWDM---EVEEYVQELKKALT 75 (342)
T ss_dssp HHTTS----HHHHHHHHHHHHT
T ss_pred HHhcC---CHHHHHHHHHHHHh
Confidence 35544 35667888888884
No 297
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=65.57 E-value=40 Score=33.24 Aligned_cols=47 Identities=17% Similarity=0.164 Sum_probs=22.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 252 KAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 252 ~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
..++.|++.|+...+.|+..=-.+.+.+.+++.+...||..+..+++
T Consensus 95 ~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~E 141 (401)
T PF06785_consen 95 EERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLRE 141 (401)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34444444444444444444444444555555555555555544433
No 298
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=65.52 E-value=60 Score=29.93 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 228 TEVFKRNAVNKLV--EMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGL 289 (304)
Q Consensus 228 ~E~~r~s~lsal~--dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eL 289 (304)
.|++|.+++-... |..+.+.++-.++.++++..|..+=..-.+++++..+.+.+|--+...|
T Consensus 3 ~EELRq~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~~~~~l 66 (214)
T PF07795_consen 3 MEELRQKLLYTTLELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLLLEKLSL 66 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5788888887663 4555666666667777777777666666666666666666665444333
No 299
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=65.43 E-value=64 Score=32.68 Aligned_cols=48 Identities=8% Similarity=-0.027 Sum_probs=34.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 039489 226 DQTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREE 273 (304)
Q Consensus 226 ~a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~ 273 (304)
.+.-.++-+++++....++++-+++++..++.--.|.++|.|+.+..+
T Consensus 22 laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e 69 (459)
T KOG0288|consen 22 LAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNE 69 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566778888888888888888887776666666677755554433
No 300
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=65.16 E-value=80 Score=29.93 Aligned_cols=34 Identities=29% Similarity=0.373 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 264 TQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 264 ~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
.+++|..=+++.++.+..|+++.++|+..|.+..
T Consensus 68 ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~ 101 (258)
T PF15397_consen 68 AKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQ 101 (258)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666677777777777766666543
No 301
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=65.07 E-value=34 Score=33.57 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 275 IDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 275 l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
++..+++|+++.+.+.++|++|+++
T Consensus 293 vk~vv~el~k~~~~f~~qleELeeh 317 (336)
T PF05055_consen 293 VKEVVKELKKNVESFTEQLEELEEH 317 (336)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 302
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=65.02 E-value=44 Score=32.93 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 244 HADITGMRKAREVEVEGLF-STQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 244 ~~el~~l~~t~~ae~e~l~-~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
+.++.++..+.+...+.+. ...++|.+...+.++.+..++.+.+.++.+++.+..+
T Consensus 59 ~~~~~~L~~ql~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~ 115 (372)
T PF04375_consen 59 QQQLQALQQQLQQLQQQLEAQQAQQLRQLQKQQQEQLQQLQQELAQLQQQLAELQQQ 115 (372)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333 4445666666666666777777777777776666544
No 303
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.92 E-value=72 Score=33.57 Aligned_cols=73 Identities=18% Similarity=0.222 Sum_probs=42.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 225 EDQTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGL----FSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 225 ~~a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l----~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
.++.++||.+-|. -.|++|.+++......+.-+|.+ .... ..+++++++|.+-+++...+.+.|++.+++|+
T Consensus 565 ~~a~~vfrEqYi~-~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~ 643 (741)
T KOG4460|consen 565 SRATQVFREQYIL-KQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLL 643 (741)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3467777766654 34666666655444433333322 2222 44555666666667777777777888887775
Q ss_pred h
Q 039489 298 M 298 (304)
Q Consensus 298 ~ 298 (304)
.
T Consensus 644 ~ 644 (741)
T KOG4460|consen 644 H 644 (741)
T ss_pred h
Confidence 4
No 304
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=64.90 E-value=20 Score=29.19 Aligned_cols=38 Identities=21% Similarity=0.130 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 261 LFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 261 l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
.....+-|.++.+.+++-+++|++..+.|+..+..+..
T Consensus 77 ~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~ 114 (116)
T cd04769 77 WPHLQQALEDKKQEIRAQITELQQLLARLDAFEASLKD 114 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455667788888888888888888888877776653
No 305
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.82 E-value=72 Score=33.57 Aligned_cols=12 Identities=33% Similarity=0.290 Sum_probs=8.1
Q ss_pred cCCCceeccccc
Q 039489 125 TPSGLVSIPYLQ 136 (304)
Q Consensus 125 d~~G~v~lpyL~ 136 (304)
.++|+.++..|-
T Consensus 336 ~S~G~L~h~~L~ 347 (741)
T KOG4460|consen 336 TSSGMLYHCVLL 347 (741)
T ss_pred ecCCceeeeeee
Confidence 567877766654
No 306
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=64.77 E-value=50 Score=33.14 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREE----EIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~----~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
+.+.-.+|..+++.|+...+.|..-+...-+|-+-|.+ +|++.++--+.|...|+++|..++++
T Consensus 224 ik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK 291 (395)
T PF10267_consen 224 IKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEK 291 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34455566666777776655555444443344444444 44455555677888888888766654
No 307
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=64.75 E-value=13 Score=26.89 Aligned_cols=38 Identities=13% Similarity=0.257 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489 264 TQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSD 301 (304)
Q Consensus 264 ~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~ 301 (304)
+|.+...=...+-.-|.+|....++||++|..|...+.
T Consensus 15 mq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~~qag 52 (54)
T PF06825_consen 15 MQDKFQTMSDQILGRIDEMSSRIDDLEKSIADLMTQAG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 33444444445566677788888888888888876654
No 308
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=64.68 E-value=24 Score=28.73 Aligned_cols=34 Identities=6% Similarity=-0.012 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
.+|+++.+.+++.+.+|+++.++|+++|+.|.+.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 3444444444444455555555555555554443
No 309
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=64.63 E-value=14 Score=38.78 Aligned_cols=43 Identities=28% Similarity=0.288 Sum_probs=36.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 251 RKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 251 ~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
....+.|+++|.+-.+.|.+++.++++.|.+|+++..+|-+.+
T Consensus 513 I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L~~~V 555 (604)
T KOG3863|consen 513 ILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELYQEV 555 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888889999999999999999999999987654
No 310
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=64.61 E-value=58 Score=25.41 Aligned_cols=21 Identities=5% Similarity=0.210 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039489 268 LRRREEEIDRGLKELQDEREG 288 (304)
Q Consensus 268 L~~~~~~l~~~I~~L~~E~~e 288 (304)
+.+-++.+++....++++-.+
T Consensus 40 ~~~a~~~~~~~~~~~~~~~~~ 60 (94)
T PF05957_consen 40 LDDARDRAEDAADQAREQARE 60 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344443334433333
No 311
>PRK04654 sec-independent translocase; Provisional
Probab=64.47 E-value=47 Score=30.61 Aligned_cols=17 Identities=18% Similarity=0.495 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039489 262 FSTQALLRRREEEIDRG 278 (304)
Q Consensus 262 ~~~q~eL~~~~~~l~~~ 278 (304)
..+..+|+...++++..
T Consensus 71 ~~~~~~lk~~~~el~q~ 87 (214)
T PRK04654 71 REAEDQLRNTQQQVEQG 87 (214)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 312
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=64.33 E-value=32 Score=37.64 Aligned_cols=15 Identities=27% Similarity=0.186 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 039489 228 TEVFKRNAVNKLVEM 242 (304)
Q Consensus 228 ~E~~r~s~lsal~dk 242 (304)
++.+.|+-...++|.
T Consensus 86 etriyRrdv~llEdd 100 (1265)
T KOG0976|consen 86 ETRIYRRDVNLLEDD 100 (1265)
T ss_pred HHHHHHHHHHHhHHH
Confidence 344444444444443
No 313
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=64.28 E-value=42 Score=27.27 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 267 LLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 267 eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
+|++=++++++.++.-+++.++||+.|
T Consensus 73 qL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 73 QLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333334444444444444444555444
No 314
>PHA02675 ORF104 fusion protein; Provisional
Probab=64.26 E-value=54 Score=25.94 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 039489 263 STQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDI 302 (304)
Q Consensus 263 ~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~ 302 (304)
+....+.+.-..++..|.+|+.-.+.|.++.-.|..|.||
T Consensus 44 k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml~L~KKIDV 83 (90)
T PHA02675 44 DSYKTITDCCRETGARLDRLERHLETLREALLKLNTKIDV 83 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcce
Confidence 3445566666777788888888888888888888888886
No 315
>PRK11020 hypothetical protein; Provisional
Probab=64.25 E-value=42 Score=28.02 Aligned_cols=54 Identities=9% Similarity=0.233 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 039489 237 NKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDERE-GLEQQLQIV 296 (304)
Q Consensus 237 sal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~-eLe~~l~~l 296 (304)
+.-.|++++.+.++..+.++++= .+++++.++|++.|.+|+..+. +|.++-+.|
T Consensus 11 ~drLD~~~~Klaaa~~rgd~~~i------~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l 65 (118)
T PRK11020 11 SDRLDAIRHKLAAASLRGDAEKY------AQFEKEKATLEAEIARLKEVQSQKLSKEAQKL 65 (118)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555544444444433 4555666666666666665443 344444333
No 316
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=64.19 E-value=77 Score=25.73 Aligned_cols=41 Identities=7% Similarity=0.141 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 039489 239 LVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGL 279 (304)
Q Consensus 239 l~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I 279 (304)
-.|+++.+.+++-.+.+..-+...+++..+...+..+.+.-
T Consensus 26 ~i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~ 66 (110)
T PF10828_consen 26 RIDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQ 66 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555444444333444444444444444444433
No 317
>PRK12765 flagellar capping protein; Provisional
Probab=64.11 E-value=38 Score=35.65 Aligned_cols=65 Identities=12% Similarity=0.147 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 235 AVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 235 ~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
.|....|-+..+++.|-++.+++-+.+.+..+.|+++=..++.+|.+|+....-|...|..+..+
T Consensus 529 ~l~~~~~~l~~~~~~l~~~~~~~~~rl~~~~~r~~~qf~alD~~i~~l~~t~s~l~~~~~~~~~~ 593 (595)
T PRK12765 529 SLTKYDESLTNEIKSLTTSKESTQELIDTKYETMANKWLQYDSIIAKLEQQFSTLKNMINAANNS 593 (595)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence 34556677888888888888888888888888888888899999999999998888888765443
No 318
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=63.92 E-value=13 Score=32.36 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039489 274 EIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~ 294 (304)
++++-+.+|++|.+++++++.
T Consensus 70 Kl~Rk~~kl~~el~~~~~~~~ 90 (161)
T PF04420_consen 70 KLNRKLDKLEEELEKLNKSLS 90 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544443
No 319
>PRK00846 hypothetical protein; Provisional
Probab=63.89 E-value=67 Score=24.92 Aligned_cols=39 Identities=13% Similarity=0.058 Sum_probs=17.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 252 KAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 252 ~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
.-.++.+|.|.++-.+..+.-+++.+.|+.|.++.++++
T Consensus 23 AfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 23 SFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444444444444445555555555555554
No 320
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=63.87 E-value=1.1e+02 Score=27.73 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
++.+.+.+.+..-.++..+.+....+...+++.++...-.++++.-+.......+.+.+-
T Consensus 87 ~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~ 146 (251)
T cd07653 87 NLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAK 146 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555566666666776666666666665555554444444433
No 321
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=63.85 E-value=86 Score=28.85 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 264 TQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 264 ~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
++.+++.+...++.--+.||+..+.|+..=+.|.
T Consensus 183 ie~~~~~q~~~le~~a~~lC~~l~~L~~~E~~L~ 216 (229)
T PF11101_consen 183 IEQEMEAQAQELEQKAQALCDSLQQLDQQEQQLQ 216 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555555544443
No 322
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=63.77 E-value=26 Score=31.23 Aligned_cols=69 Identities=19% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDILE 304 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~~ 304 (304)
++....+++.++.+...+..++...+.+++ ..|+..-.+.++.++.|+||...|.-++..++.+.+-|+
T Consensus 100 ~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 100 LNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 323
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=63.54 E-value=46 Score=27.00 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 039489 241 EMVHADITGMRKAREVEVEGLFSTQALLRRREE--EIDRGLKELQDEREG 288 (304)
Q Consensus 241 dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~--~l~~~I~~L~~E~~e 288 (304)
..++.+--++....++.+..++.+..+.+...+ ++...|+.++.+.+.
T Consensus 20 ~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~ 69 (106)
T PF05837_consen 20 SDVEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKK 69 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHH
Confidence 445556666777778888877777766666555 344444444444333
No 324
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=63.53 E-value=49 Score=35.09 Aligned_cols=31 Identities=6% Similarity=-0.051 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 039489 235 AVNKLVEMVHADITGMRKAREVEVEGLFSTQ 265 (304)
Q Consensus 235 ~lsal~dkl~~el~~l~~t~~ae~e~l~~~q 265 (304)
-|++-+.+++.+.+......+++-..|.+++
T Consensus 33 qmseev~~L~eEk~~~~~~V~eLE~sL~eLk 63 (617)
T PF15070_consen 33 QMSEEVRTLKEEKEHDISRVQELERSLSELK 63 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444
No 325
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=63.45 E-value=64 Score=27.46 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 039489 277 RGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 277 ~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
+-|+.|..+.++|+..|+.|..
T Consensus 109 ~dv~~L~~rId~L~~~v~~l~~ 130 (132)
T PF05597_consen 109 KDVEALSARIDQLTAQVERLAN 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4456677777777777766654
No 326
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.37 E-value=53 Score=31.67 Aligned_cols=54 Identities=15% Similarity=0.248 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 244 HADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 244 ~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
......+-+..++.++...++.++|...+.++.+.|..|+.-.--|.+++++++
T Consensus 128 d~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~~~s~~~~k~e 181 (300)
T KOG2629|consen 128 DDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNTLVQLSRNIEKLE 181 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 333444444555555555556666666666666555555555444444444443
No 327
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=63.36 E-value=38 Score=33.27 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
++|+++++++.+.+.+.++....|+..|..+.
T Consensus 111 ~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~ 142 (355)
T PF09766_consen 111 KELEQRKKKLQQENKKKKKFLDSLPPQLKSLK 142 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34444444444444444444444444444443
No 328
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=63.21 E-value=77 Score=29.86 Aligned_cols=73 Identities=8% Similarity=0.161 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 230 VFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ-----------------ALLRRREEEIDRGLKELQDEREGLEQQ 292 (304)
Q Consensus 230 ~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q-----------------~eL~~~~~~l~~~I~~L~~E~~eLe~~ 292 (304)
.+.-..|.+++.+-.-||++.-+-....+..+.+=. .+++..+.+|+.+|+-+....+|||..
T Consensus 70 ~l~~~~LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~ 149 (254)
T KOG2196|consen 70 SLTYKTLEELINKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDL 149 (254)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456777777777777766654444433333311 455666777888888888888888888
Q ss_pred HHHHhhcccc
Q 039489 293 LQIVLMNSDI 302 (304)
Q Consensus 293 l~~l~~~~~~ 302 (304)
|..|+.+...
T Consensus 150 L~~lE~k~~~ 159 (254)
T KOG2196|consen 150 LDPLETKLEL 159 (254)
T ss_pred HHHHHHHHhc
Confidence 8888776654
No 329
>PRK10780 periplasmic chaperone; Provisional
Probab=63.18 E-value=82 Score=27.22 Aligned_cols=30 Identities=7% Similarity=0.120 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEGLFS 263 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~ 263 (304)
..|.+.++..+.+|+.+....+.+++.+.+
T Consensus 46 ~~le~~~~~~q~el~~~~~elq~~~~~~q~ 75 (165)
T PRK10780 46 KQLENEFKGRASELQRMETDLQAKMQKLQR 75 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666666666666555555533
No 330
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=62.98 E-value=34 Score=34.90 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
.+++.+.+.+++.+..|+++.+-|+..++.+..
T Consensus 196 ~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~ 228 (475)
T PF10359_consen 196 PELKSDIEELERHISSLKERIEFLENMLEDLED 228 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566666666666677777777777666666643
No 331
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=62.97 E-value=1.1e+02 Score=27.25 Aligned_cols=11 Identities=18% Similarity=0.326 Sum_probs=4.5
Q ss_pred CHHHHHHHHHH
Q 039489 144 NLVDLVRELSA 154 (304)
Q Consensus 144 ~L~~Lv~~l~~ 154 (304)
+++.|-+.|-.
T Consensus 34 dVi~L~e~Ld~ 44 (189)
T PF10211_consen 34 DVIQLQEWLDK 44 (189)
T ss_pred HHHHHHHHHHH
Confidence 44444333433
No 332
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=62.91 E-value=77 Score=25.28 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=26.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 256 VEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 256 ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
+.++.+..-.+.|+.+-.++++.+..++++.++++..|..+.
T Consensus 63 ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 63 EARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444466666666777777777777777777766553
No 333
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.80 E-value=40 Score=34.13 Aligned_cols=64 Identities=13% Similarity=0.203 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 234 NAVNKLVEMVHADITGMRKAREV---------EVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~a---------e~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
..+..-.+++.+|++.++.-... ||+.-......|+.=---+++.|++|+++..+-|+.|+.|.
T Consensus 110 tq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~ 182 (542)
T KOG0993|consen 110 TQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELS 182 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444456666666666654333 33333333333333333444455555555555555555554
No 334
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=62.72 E-value=64 Score=24.33 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
..|.++.+.....|.....+..+|...++.+
T Consensus 29 k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L 59 (69)
T PF14197_consen 29 KRLRRERDSAERQLGDAYEENNKLKEENEAL 59 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444
No 335
>PLN02372 violaxanthin de-epoxidase
Probab=62.66 E-value=74 Score=32.26 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=15.4
Q ss_pred CChHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 039489 225 EDQTEVFKRNAVNK---LVEMVHADITGMRKAR 254 (304)
Q Consensus 225 ~~a~E~~r~s~lsa---l~dkl~~el~~l~~t~ 254 (304)
+..+|..-+-.+++ +++.+..+++.+.++.
T Consensus 367 ~~~~e~~e~~i~~e~~~~~~e~~~~v~~~~~~~ 399 (455)
T PLN02372 367 EKDVEEGEKTIVKEARQIEEELEKEVEKLGKEE 399 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554 4445555555555533
No 336
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=62.59 E-value=73 Score=26.09 Aligned_cols=71 Identities=17% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------HHHHH-------------------------------------
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEGLFSTQ------ALLRR------------------------------------- 270 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q------~eL~~------------------------------------- 270 (304)
..+.+..++++.+++.+.++.+.....+...+ ..|..
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~v 81 (129)
T cd00584 2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYV 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEE
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 039489 271 ------REEEIDRGLKELQDEREGLEQQLQIVLMNSDILE 304 (304)
Q Consensus 271 ------~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~~ 304 (304)
-.+-+++.++.|++..++|++++..+....+.++
T Consensus 82 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~ 121 (129)
T cd00584 82 EKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLE 121 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 337
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=62.53 E-value=25 Score=35.68 Aligned_cols=71 Identities=13% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 229 EVFKRNAVNKLVEMVHADIT------GMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 229 E~~r~s~lsal~dkl~~el~------~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
+++...+|.+=.+.++.=+. -+..+.++.++.+.....-|..+++.+++.|++|+++.+.++++++.++++
T Consensus 359 ~~kl~~al~~np~~V~~lF~~~~~~~G~~~~l~~~l~~~~~~~G~l~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~r 435 (462)
T PRK08032 359 DDKLTKALKEDPAGVKALFVGDGKKTGITTQIATNLKSWLSTTGIIKTATDGVNKTLKKLTKQYNAVSDSIDATIAR 435 (462)
T ss_pred HHHHHHHHHHCHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 338
>PRK11546 zraP zinc resistance protein; Provisional
Probab=62.36 E-value=1e+02 Score=26.62 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039489 235 AVNKLVEMVHADITGMRKARE 255 (304)
Q Consensus 235 ~lsal~dkl~~el~~l~~t~~ 255 (304)
.+.++.++-..+...||++.-
T Consensus 51 ~~q~I~~~f~~~t~~LRqqL~ 71 (143)
T PRK11546 51 AWQKIHNDFYAQTSALRQQLV 71 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555544433
No 339
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=62.30 E-value=1.2e+02 Score=27.34 Aligned_cols=65 Identities=15% Similarity=0.201 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 039489 232 KRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGL-KELQDEREGLEQQLQIV 296 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I-~~L~~E~~eLe~~l~~l 296 (304)
.++-|.+++.-+++-....-+..+.+.+....+.+.|...+.++...+ .+++.+...|...|...
T Consensus 103 n~s~I~e~V~~ikrL~~~qekrqekL~~kh~e~lq~i~ee~~k~q~~l~~eye~k~~~L~~Ei~~~ 168 (185)
T PF08703_consen 103 NRSHIQEVVQEIKRLEEKQEKRQEKLEEKHEEVLQQIEEEEKKLQAELEQEYEEKMKRLPQEIRES 168 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 345555555554444445555555666666666666666666555544 56677777777666544
No 340
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=62.26 E-value=64 Score=33.84 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 039489 280 KELQDEREGLEQQLQIVL 297 (304)
Q Consensus 280 ~~L~~E~~eLe~~l~~l~ 297 (304)
++|..|+++|++.|.++.
T Consensus 335 e~mn~Er~~l~r~l~~i~ 352 (581)
T KOG0995|consen 335 ERMNLERNKLKRELNKIQ 352 (581)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 341
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=62.26 E-value=37 Score=24.71 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039489 279 LKELQDEREGLEQQLQIV 296 (304)
Q Consensus 279 I~~L~~E~~eLe~~l~~l 296 (304)
++++.++.+++++++.+|
T Consensus 23 n~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 23 NEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444444444
No 342
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=62.23 E-value=82 Score=25.40 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
..|+.+.+.++.-|+.|+++.+.|++.+..+..+
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEK 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777777777777777766554
No 343
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=62.18 E-value=37 Score=34.08 Aligned_cols=49 Identities=14% Similarity=0.151 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 039489 231 FKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGL 279 (304)
Q Consensus 231 ~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I 279 (304)
-.++.+.++...+..++..+......+.+.+.+-.+.|.++.+.+++.+
T Consensus 317 ~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~ 365 (458)
T COG3206 317 ALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRL 365 (458)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666677777777777777776666666666666666666555
No 344
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=62.14 E-value=35 Score=25.50 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=15.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 251 RKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 251 ~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
..-.++.++.|..+=.+..+.-++|++.++.|.++..+++
T Consensus 13 la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 13 LAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444444444433333334445555555555555544
No 345
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=62.11 E-value=75 Score=26.90 Aligned_cols=60 Identities=18% Similarity=0.127 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 229 EVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREG 288 (304)
Q Consensus 229 E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~e 288 (304)
|+.+-.+-...-+-=++||++-....|.|..++..++..|.+|-..|+..++..+.+...
T Consensus 12 Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~ 71 (134)
T PF08232_consen 12 EWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKK 71 (134)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455555555556666788888888888888888888888888888888887776666544
No 346
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.59 E-value=62 Score=33.37 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGL 289 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eL 289 (304)
+-|.++++.+.+.++.|++..+.+
T Consensus 469 e~lt~~~e~l~~Lv~Ilk~d~edi 492 (508)
T KOG3091|consen 469 EHLTQEQEALTKLVNILKGDQEDI 492 (508)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 445555555555555555555555
No 347
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=61.54 E-value=1.2e+02 Score=28.28 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
+.+..+.....+..+..+....-+.+..++.++.+...++++....+..+...+..+++.+
T Consensus 80 l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l 140 (256)
T PF14932_consen 80 LQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQL 140 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555666666555555555555555554444444444433
No 348
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=61.46 E-value=32 Score=38.88 Aligned_cols=15 Identities=20% Similarity=0.231 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 039489 242 MVHADITGMRKAREV 256 (304)
Q Consensus 242 kl~~el~~l~~t~~a 256 (304)
.+.+.++.+.++.++
T Consensus 409 ~~~~k~kKleke~ek 423 (1293)
T KOG0996|consen 409 RLTSKIKKLEKEIEK 423 (1293)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 349
>PHA01750 hypothetical protein
Probab=61.46 E-value=27 Score=26.48 Aligned_cols=28 Identities=21% Similarity=0.451 Sum_probs=10.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 256 VEVEGLFSTQALLRRREEEIDRGLKELQ 283 (304)
Q Consensus 256 ae~e~l~~~q~eL~~~~~~l~~~I~~L~ 283 (304)
.|++.|..--++++.+++.+++.|++++
T Consensus 42 ~ELdNL~~ei~~~kikqDnl~~qv~eik 69 (75)
T PHA01750 42 SELDNLKTEIEELKIKQDELSRQVEEIK 69 (75)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344433333444444444333333333
No 350
>PF12614 RRF_GI: Ribosome recycling factor ; InterPro: IPR022253 This family of proteins is found in bacteria and viruses. Proteins in this family are approximately 130 amino acids in length. There are two conserved sequence motifs: LPS and LKR. Overproduction of ribosome recycling factor (RRF) reduces tna operon expression and increases the rate of cleavage of TnaC-tRNA(2)(Pro), relieving the growth inhibition associated with plasmid-mediated tnaC overexpression.
Probab=61.45 E-value=24 Score=30.00 Aligned_cols=67 Identities=21% Similarity=0.297 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 233 RNAVNKLVEMVHADITGMRKAR----EVEVEGLFSTQALLRRRE--------EEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 233 ~s~lsal~dkl~~el~~l~~t~----~ae~e~l~~~q~eL~~~~--------~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
.+.++++.-+..++|+..++-+ ..|-+.+.+.-.+|+.+. .++++++....++.+-|+..+..|-..
T Consensus 21 ~k~~ka~A~q~~CeLKRVRRSRnWql~Ge~~~l~~~~~~lk~~~~~~~~~li~kie~~L~~~~dkle~l~~~L~~Li~~ 99 (128)
T PF12614_consen 21 VKQAKALARQHGCELKRVRRSRNWQLSGEADQLQSFLDQLKAEDYEEFQFLIKKIEAALLQHSDKLEPLEDKLARLIPQ 99 (128)
T ss_pred HHHHHHHHHHhCchHHHHHHhhhhHHhhhHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcccccccchHHHHHHHHHHh
Confidence 3577888889999999998844 445555555556664443 367777777777778888888777443
No 351
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=61.41 E-value=1.4e+02 Score=28.60 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 039489 279 LKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 279 I~~L~~E~~eLe~~l~~l~ 297 (304)
+.+|+.|...|++.+..+.
T Consensus 237 l~~l~~~~~~l~k~~~~~~ 255 (269)
T PF05278_consen 237 LGELEMESTRLSKTIKSIK 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 352
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=61.41 E-value=11 Score=28.72 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=28.6
Q ss_pred CcccCCCceeccccccccCCCCCHHHHHHHHHHHhcc
Q 039489 122 PHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 122 ~~Vd~~G~v~lpyL~~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
--||.+|.|.+|++-.-.-..-++.++-+.+...|.+
T Consensus 33 ~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~ 69 (82)
T PF02563_consen 33 YTVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRLQK 69 (82)
T ss_dssp EE--TTSEEEETTTEEEE-TT--HHHHHHHHHHHHTT
T ss_pred eEECCCCcEeecccceEEECCCCHHHHHHHHHHHHHH
Confidence 3479999999999998887688999999999999988
No 353
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=61.38 E-value=33 Score=34.48 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 238 KLVEMVHADITGMRKAREVEVEGLFSTQA---------LLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 238 al~dkl~~el~~l~~t~~ae~e~l~~~q~---------eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
+..+++..+++++....++....+.+++. +.++...++.+....|.++.++|+..+..|.+.
T Consensus 334 ~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~ 404 (451)
T PF03961_consen 334 EKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEE 404 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33355555555655555555555555443 344555666777777777777777777766543
No 354
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=61.20 E-value=76 Score=28.13 Aligned_cols=45 Identities=16% Similarity=0.221 Sum_probs=25.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 254 REVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 254 ~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
.+...+++..++.+..+-+++++..+.+|++=+..|.+-...+..
T Consensus 105 ~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~ 149 (184)
T PF05791_consen 105 KEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKT 149 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666666666666555555555544433
No 355
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=61.20 E-value=54 Score=24.66 Aligned_cols=41 Identities=7% Similarity=0.056 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 243 VHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQ 283 (304)
Q Consensus 243 l~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~ 283 (304)
|+++=..|+.+..+..+.-..+.+....-..+++.+|.+|+
T Consensus 19 L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 19 LKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333333333333333333333444444445555555544
No 356
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=61.13 E-value=89 Score=30.92 Aligned_cols=11 Identities=18% Similarity=0.181 Sum_probs=6.7
Q ss_pred HHHHHHHHHhc
Q 039489 14 QIQQFLSSVLS 24 (304)
Q Consensus 14 ~~~~wL~~vl~ 24 (304)
++..||.+.+.
T Consensus 47 ~L~~WL~~~~g 57 (359)
T PF10498_consen 47 SLCAWLISKAG 57 (359)
T ss_pred HHHHHHHHhcC
Confidence 36667777554
No 357
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=61.07 E-value=2.7 Score=43.13 Aligned_cols=9 Identities=33% Similarity=0.755 Sum_probs=0.0
Q ss_pred CCeEEEecC
Q 039489 104 PPCVYVNPT 112 (304)
Q Consensus 104 pPivyV~pt 112 (304)
.|+-|=+|.
T Consensus 174 ~PLSFQNPv 182 (495)
T PF12004_consen 174 APLSFQNPV 182 (495)
T ss_dssp ---------
T ss_pred ccccCCCCC
Confidence 455555553
No 358
>PRK00295 hypothetical protein; Provisional
Probab=61.05 E-value=58 Score=24.39 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 244 HADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 244 ~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
..++.-+-++.+++.+.+.+.|.++ ..|++.++.|.++.++++
T Consensus 11 E~kla~qE~tie~Ln~~v~~Qq~~I----~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 11 ESRQAFQDDTIQALNDVLVEQQRVI----ERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhh
Confidence 3334444444444444444444444 444444555544444443
No 359
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=60.57 E-value=35 Score=25.87 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLK--ELQDEREGLEQQL 293 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~--~L~~E~~eLe~~l 293 (304)
.++.+.+++.++..+ +++++.++|.+.|
T Consensus 59 ~e~~~~~~~~~~~~~~~~l~~~i~~L~~~l 88 (89)
T PF05164_consen 59 DELLKLKRELDELEELERLEERIEELNERL 88 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 555555555554444 7777777766655
No 360
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=60.54 E-value=1.1e+02 Score=28.43 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 267 LLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 267 eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
++++-+++.++++++.++..+..++++.
T Consensus 121 ei~k~r~e~~~ml~evK~~~E~y~k~~k 148 (230)
T PF03904_consen 121 EIKKVREENKSMLQEVKQSHEKYQKRQK 148 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555555554444444443
No 361
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=60.50 E-value=60 Score=30.68 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
.+|+++.+.|...|+.|++|...|.+.+.
T Consensus 225 ~~leken~~lr~~v~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 225 AELEKENEALRTQVEQLKKELATLRRLFL 253 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666654443
No 362
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=60.44 E-value=38 Score=31.39 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 261 LFSTQALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 261 l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
....++++++..+.|++.+++|..|.++++..+
T Consensus 176 ~~~~~~~~~~~aq~L~~k~r~l~~~~~~~~~~~ 208 (247)
T PF14661_consen 176 KDAARQKYQEFAQLLRKKYRELSAECAELQAQL 208 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444445555555555544444
No 363
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=60.42 E-value=1.1e+02 Score=26.06 Aligned_cols=9 Identities=11% Similarity=0.320 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 039489 267 LLRRREEEI 275 (304)
Q Consensus 267 eL~~~~~~l 275 (304)
.+.+++.+.
T Consensus 71 ~~~erqk~~ 79 (131)
T PF10158_consen 71 QMVERQKRF 79 (131)
T ss_pred HHHHHHHHH
Confidence 333333333
No 364
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=60.39 E-value=56 Score=32.47 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039489 274 EIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l 293 (304)
++++.++.++++.+++++.+
T Consensus 277 ~~~~q~~~~~k~~~~~~~~~ 296 (406)
T PF02388_consen 277 ELEEQLASLEKRIEEAEELI 296 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 365
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=60.36 E-value=63 Score=34.32 Aligned_cols=51 Identities=18% Similarity=0.304 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 243 VHADITGMRKAREVE---VEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 243 l~~el~~l~~t~~ae---~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
|+.+++.+..+.++. ++.|..+..+.+.+=.++++.+++++.+..+..+.+
T Consensus 92 L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLL 145 (617)
T PF15070_consen 92 LRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLL 145 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433332 344444434444444444444444444444433333
No 366
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=60.27 E-value=78 Score=34.84 Aligned_cols=16 Identities=6% Similarity=0.164 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 039489 238 KLVEMVHADITGMRKA 253 (304)
Q Consensus 238 al~dkl~~el~~l~~t 253 (304)
..+-++|++...+-+.
T Consensus 85 qetriyRrdv~llEdd 100 (1265)
T KOG0976|consen 85 QETRIYRRDVNLLEDD 100 (1265)
T ss_pred HHHHHHHHHHHHhHHH
Confidence 3333444444333333
No 367
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=60.26 E-value=46 Score=31.62 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=20.7
Q ss_pred HHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 255 EVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 255 ~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
.-.+|.+.+++ ..|+.+..+|...+.+|.+..+++.+.+.
T Consensus 223 ~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~ 265 (279)
T KOG0837|consen 223 KRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVM 265 (279)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444455554 33444444566666666666555555543
No 368
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=60.22 E-value=27 Score=36.79 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 273 EEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 273 ~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
+++.+.+++|.+++++|+++++.++.
T Consensus 96 ~~~~~~i~~l~~~~~~L~~~~~~l~~ 121 (646)
T PRK05771 96 EKIEKEIKELEEEISELENEIKELEQ 121 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 369
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=60.18 E-value=63 Score=23.39 Aligned_cols=26 Identities=27% Similarity=0.472 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQ 291 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~ 291 (304)
..|......|.+.+..|+++...|..
T Consensus 36 ~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 36 EELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444433
No 370
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=60.17 E-value=70 Score=31.56 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNS 300 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~ 300 (304)
.+|++-++-|++.=+.|++-++.++.++..|..+-
T Consensus 350 ~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri 384 (388)
T PF04912_consen 350 SQLKKWEELLNKVEEKFKENMETIEKNVKKLEERI 384 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444444444444443
No 371
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=60.09 E-value=86 Score=33.92 Aligned_cols=69 Identities=16% Similarity=0.222 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhh
Q 039489 229 EVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQD-------EREGLEQQLQIVLM 298 (304)
Q Consensus 229 E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~-------E~~eLe~~l~~l~~ 298 (304)
+.+.+.+++++. +++.+|++|+......-+........++.+-+.+.+-+..+++ +..+||+.|..+..
T Consensus 358 e~Ky~vav~Ev~-~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~ 433 (717)
T PF09730_consen 358 ECKYKVAVSEVI-QLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSK 433 (717)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 355556666554 4688888887766655554444444445555555444444444 66777777666543
No 372
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=60.09 E-value=34 Score=35.75 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=34.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 253 AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 253 t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
..++|+-..+++=.+-.++..+++..|.+|++|.++|...+.+.
T Consensus 89 ~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~ 132 (546)
T KOG0977|consen 89 KYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKA 132 (546)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45666666666667777888888999999999988888887765
No 373
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=60.02 E-value=97 Score=29.80 Aligned_cols=13 Identities=8% Similarity=0.207 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 039489 232 KRNAVNKLVEMVH 244 (304)
Q Consensus 232 r~s~lsal~dkl~ 244 (304)
.+++|+++.-+++
T Consensus 110 lk~aIq~i~~~~q 122 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQ 122 (338)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444433333
No 374
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=59.92 E-value=71 Score=26.92 Aligned_cols=89 Identities=19% Similarity=0.298 Sum_probs=51.5
Q ss_pred CCceeeEEEEEe-ccccc-ccCcccceeEEEeecccCCCCCC-eEEEecCC----CceecCCCCcc--cCCCcee---cc
Q 039489 66 DGRSVNLLQADG-TVPMP-FQGVTYNIPVIIWLMESYPRHPP-CVYVNPTR----DMIIKRPHPHV--TPSGLVS---IP 133 (304)
Q Consensus 66 dG~~~~LL~L~G-tIPi~-y~g~~ynIPi~Iwlp~~YP~~pP-ivyV~pt~----~m~I~~~~~~V--d~~G~v~---lp 133 (304)
+|.. ..|+|.| .||-. |.+.. +-|.|-||..||..++ ++||.|.- +..| ++...+ .-+|+.+ .-
T Consensus 21 eg~~-~~lii~~~~LP~G~y~~~~--~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~i-P~~~~~~~~~~G~~wQrWSR 96 (122)
T PF14462_consen 21 EGGR-RWLIIKGYPLPEGKYNHNE--VDILILIPPGYPDAPLDMFYVYPPLKLADGGPI-PNAAEVTQTFDGRTWQRWSR 96 (122)
T ss_pred eCCc-cEEEEeCCcCCCCccCccc--eEEEEECCCCCCCCCCCcEEECCceEccCCCcC-CchhcchhhcCCeeeeeecC
Confidence 5543 3455777 45644 44333 5568999999998865 67777641 1222 111111 1256644 11
Q ss_pred ccccccCCCCCHHHHHHHHHHHhcc
Q 039489 134 YLQNWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 134 yL~~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
-.+.|.+..-+|...|.-+...+.+
T Consensus 97 H~~~W~P~~D~l~T~l~~v~~~L~~ 121 (122)
T PF14462_consen 97 HNNPWRPGVDDLWTHLARVEHALAK 121 (122)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHhh
Confidence 1667887777888888777766544
No 375
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=59.79 E-value=25 Score=39.81 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhc
Q 039489 243 VHADITGMRKAREVEVEGLFSTQALLRRREEEID---RGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 243 l~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~---~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
+-..+++|+++.++.-+.|..+++.|..-.+.+. +.|+.|+++...|......|.++
T Consensus 1230 l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~ 1289 (1758)
T KOG0994|consen 1230 LASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQ 1289 (1758)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444544444444444444443333222 56666666666665555555443
No 376
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=59.61 E-value=75 Score=26.92 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 233 RNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQ 291 (304)
Q Consensus 233 ~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~ 291 (304)
..+|.++++.-+.....-......-...+...|+.+..=++.|...-+.|...+++|.+
T Consensus 53 ~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~ 111 (142)
T PF04048_consen 53 EKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCRREELKE 111 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 35555555555555555555666666666666644444444444444444444444433
No 377
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=59.59 E-value=93 Score=26.65 Aligned_cols=52 Identities=25% Similarity=0.311 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 039489 242 MVHADITGMRKAREVEVEGLFSTQALLRRREE---EIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 242 kl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~---~l~~~I~~L~~E~~eLe~~l 293 (304)
.+.+.+.+..++.+.+-+.+.+.+..|++..+ .+++.++.++.+.++.++.+
T Consensus 31 ~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 31 ALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444445555555555555555555555444 55666666666666666553
No 378
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=59.43 E-value=51 Score=30.47 Aligned_cols=19 Identities=11% Similarity=0.368 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039489 275 IDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 275 l~~~I~~L~~E~~eLe~~l 293 (304)
++..|+.++.++..|++++
T Consensus 174 v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 174 VRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3333444555555555544
No 379
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=59.35 E-value=60 Score=32.95 Aligned_cols=31 Identities=29% Similarity=0.380 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
.+|.++.+.+.+-|+.++.+..+++..++.+
T Consensus 71 ~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ 101 (429)
T COG0172 71 EELIAEVKELKEKLKELEAALDELEAELDTL 101 (429)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4466666666666666666666666666554
No 380
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=59.34 E-value=87 Score=25.64 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039489 268 LRRREEEIDRGLKELQDEREGL 289 (304)
Q Consensus 268 L~~~~~~l~~~I~~L~~E~~eL 289 (304)
|.-|.++|.+-|+.|++|.+..
T Consensus 52 L~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 52 LTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555555555533
No 381
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=59.22 E-value=1.4e+02 Score=27.01 Aligned_cols=27 Identities=37% Similarity=0.510 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 271 REEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 271 ~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
+-..+++.|+.|+-|.+.|+.++..+.
T Consensus 94 rl~~~ek~l~~Lk~e~evL~qr~~kle 120 (201)
T PF13851_consen 94 RLKELEKELKDLKWEHEVLEQRFEKLE 120 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555554444443
No 382
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=59.21 E-value=84 Score=28.81 Aligned_cols=20 Identities=20% Similarity=0.506 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039489 272 EEEIDRGLKELQDEREGLEQ 291 (304)
Q Consensus 272 ~~~l~~~I~~L~~E~~eLe~ 291 (304)
.+.++.-|..|+++..+.+.
T Consensus 171 e~~~e~~i~~L~~~lkeaE~ 190 (237)
T PF00261_consen 171 EDEYEEKIRDLEEKLKEAEN 190 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333
No 383
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=59.18 E-value=1.2e+02 Score=27.42 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 230 VFKRNAVNKLVEMV---HADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGL 289 (304)
Q Consensus 230 ~~r~s~lsal~dkl---~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eL 289 (304)
+.|++.+.++..+| +.+..++.+..+.+..+.-.++ .+|++..+.+.+.++.|+.|...+
T Consensus 77 ~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~ 142 (203)
T KOG3433|consen 77 CDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKI 142 (203)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666655554 3455566665555555555554 356665555555555555554443
No 384
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=58.91 E-value=58 Score=33.32 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
.+|..+..++++.+++|+++.++|++++..+..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 141 ERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 555555666666777777777777777666643
No 385
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=58.80 E-value=41 Score=27.21 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 264 TQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 264 ~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
--..++.+-..+++.+..|+.+.++++++++.+
T Consensus 75 r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 75 KKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555544
No 386
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=58.71 E-value=1.1e+02 Score=26.32 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 273 EEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 273 ~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
..|..+|+....|...||..|..+
T Consensus 107 ~~Lq~~~~~~~~ki~~Le~~i~~~ 130 (146)
T PF08702_consen 107 RVLQNILRSNRQKIQRLEQDIDQQ 130 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555444
No 387
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=58.55 E-value=44 Score=27.02 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQI 295 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~ 295 (304)
..|+++.+++++.+.+++++.++++.+++.
T Consensus 97 ~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 97 ETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555543
No 388
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=58.51 E-value=56 Score=30.20 Aligned_cols=28 Identities=39% Similarity=0.468 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489 274 EIDRGLKELQDEREGLEQQLQIVLMNSD 301 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~l~~~~~ 301 (304)
++++.|.+.+.|.+.++.++..|.++++
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5666677777777777777777766654
No 389
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=58.49 E-value=55 Score=29.27 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 039489 277 RGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 277 ~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
+..++++.+.++|++.|+..++
T Consensus 153 ~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 153 KKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4456666677777777666543
No 390
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=58.43 E-value=1.1e+02 Score=25.57 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 246 DITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 246 el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
+++.+..+.+.|++.......++..+-+.+++.|++|+.+.++.....
T Consensus 64 k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r 111 (139)
T PF05615_consen 64 KSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVR 111 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666668888888888888888888888888877776664433
No 391
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=58.32 E-value=14 Score=29.17 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 039489 230 VFKRNAVNKLVEMVHADITGMRKAREVEVEGLFS 263 (304)
Q Consensus 230 ~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~ 263 (304)
.-+|.++..-+.+|+.+|+.-++.+.++-.++..
T Consensus 7 ~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~ 40 (88)
T PF14389_consen 7 HERRSALEQEVAELQKQLQEEQDLRRALEKALGR 40 (88)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4577778888888888888888887777777665
No 392
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=58.29 E-value=11 Score=29.26 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.5
Q ss_pred cceeEEEeecccCCCCCCeEEEec
Q 039489 88 YNIPVIIWLMESYPRHPPCVYVNP 111 (304)
Q Consensus 88 ynIPi~Iwlp~~YP~~pPivyV~p 111 (304)
..+=+.|.+|.+||..+|.+++.-
T Consensus 41 ~~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 41 VSLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred eEEEEEEECCCCCCCCCCCeEEEC
Confidence 446688999999999999999863
No 393
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=58.29 E-value=63 Score=26.28 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=22.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 251 RKAREVEVEGLFSTQALLRRREEEIDRGLKELQDER 286 (304)
Q Consensus 251 ~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~ 286 (304)
.--.+-|.|.|.++...|+++.+.-++.|++|+++.
T Consensus 64 ~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 64 QYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334455666677777777776666666666666654
No 394
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=58.27 E-value=91 Score=32.04 Aligned_cols=67 Identities=13% Similarity=0.274 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhh
Q 039489 232 KRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLK----------ELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~----------~L~~E~~eLe~~l~~l~~ 298 (304)
+++.|..-+..+..+|+.++.....+++..-.-=.+|-++=.+|++.|. +|.|+++.|-++|..+..
T Consensus 147 ~a~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~~~~~g~~~ndLlDqRD~ll~~LS~~v~ 223 (507)
T PRK07739 147 RAQALAETFNYLSQSLTDIQNDLKSEIDVTVKEINSLASQISDLNKQIAKVEPNGYLPNDLYDQRDLLLDELSKIVN 223 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhhcC
Confidence 4555666666667777777777777776655544555555556665553 588999998888887754
No 395
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=58.27 E-value=79 Score=31.33 Aligned_cols=29 Identities=17% Similarity=0.270 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
++|+-...++.+.|.+++.+.+.|+++|.
T Consensus 261 ~~Le~ql~~~~~ei~~~e~~i~~L~~ai~ 289 (384)
T PF03148_consen 261 NELEWQLKKTLQEIAEMEKNIEDLEKAIR 289 (384)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 396
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=58.26 E-value=80 Score=24.00 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489 237 NKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSD 301 (304)
Q Consensus 237 sal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~ 301 (304)
.+++.++..-++.|-+....--+...+--++|+..-+.-.+.-..|+....+|.+.++.|....+
T Consensus 2 teLE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~ 66 (70)
T PF04899_consen 2 TELEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLE 66 (70)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554444444444444555555444444445566666666666666655443
No 397
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=58.25 E-value=64 Score=34.07 Aligned_cols=10 Identities=10% Similarity=0.086 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 039489 41 IRQHLLTLIS 50 (304)
Q Consensus 41 v~~dv~~vl~ 50 (304)
+..++...+.
T Consensus 67 ~~~~lA~~~k 76 (594)
T PF05667_consen 67 VGTSLAQACK 76 (594)
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 398
>PRK04863 mukB cell division protein MukB; Provisional
Probab=58.23 E-value=48 Score=38.74 Aligned_cols=59 Identities=20% Similarity=0.211 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 238 KLVEMVHADITGMRKAREVEVEGLFSTQALLRRRE---EEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 238 al~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~---~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
++.++++.+++.+.+..+...+.+.+.+.++.+-. ..+++.++.++++.++++..++.|
T Consensus 985 ~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~ 1046 (1486)
T PRK04863 985 DLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDL 1046 (1486)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566666666666666666666666554443333 344455555555555555555554
No 399
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=58.16 E-value=65 Score=33.03 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDI 302 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~ 302 (304)
..+.+-++.+.+.+.+|....++||++|..|+.+-+.
T Consensus 423 ~d~aK~~~~myd~~~~l~~~q~~le~qI~~Le~kl~~ 459 (489)
T KOG3684|consen 423 VDLAKTQNDMYDLLQELHSRQEELEKQIDTLESKLEA 459 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556667777788888888888888888776554
No 400
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=58.02 E-value=1.1e+02 Score=25.49 Aligned_cols=28 Identities=32% Similarity=0.346 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 271 REEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 271 ~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
-.+.+++.++.|++..++|++.++.+..
T Consensus 95 A~~~l~~~~~~l~~~~~~l~~~l~~~~~ 122 (140)
T PRK03947 95 AIEILDKRKEELEKALEKLEEALQKLAS 122 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 401
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=57.97 E-value=87 Score=24.32 Aligned_cols=18 Identities=11% Similarity=0.248 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039489 235 AVNKLVEMVHADITGMRK 252 (304)
Q Consensus 235 ~lsal~dkl~~el~~l~~ 252 (304)
+|++-+|.+-.++...+.
T Consensus 8 ~ir~Ef~~~~~e~~~~k~ 25 (79)
T PF08581_consen 8 AIRQEFENLSQEANSYKH 25 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555444444444
No 402
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=57.91 E-value=8 Score=31.68 Aligned_cols=10 Identities=10% Similarity=0.172 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 039489 228 TEVFKRNAVN 237 (304)
Q Consensus 228 ~E~~r~s~ls 237 (304)
|+.|+.++..
T Consensus 23 VD~fl~~l~~ 32 (131)
T PF05103_consen 23 VDDFLDELAE 32 (131)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 403
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=57.91 E-value=1.1e+02 Score=25.33 Aligned_cols=30 Identities=20% Similarity=0.502 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHhhccc
Q 039489 272 EEEIDRGLKELQ----DEREGLEQQLQIVLMNSD 301 (304)
Q Consensus 272 ~~~l~~~I~~L~----~E~~eLe~~l~~l~~~~~ 301 (304)
++.+++.+.+|. ++.++|+.+|..|..+-+
T Consensus 80 ~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~ 113 (118)
T TIGR01837 80 DERVEQALNRLNIPSREEIEALSAKIEQLAVQVE 113 (118)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345667777775 788888888888876543
No 404
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=57.86 E-value=1.1e+02 Score=26.24 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 274 EIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
.+++.+..|+.+...+|+.+..+..
T Consensus 112 ~~eRkv~~le~~~~~~E~k~eel~~ 136 (143)
T PF12718_consen 112 HFERKVKALEQERDQWEEKYEELEE 136 (143)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444444444445555554444433
No 405
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=57.63 E-value=59 Score=33.28 Aligned_cols=54 Identities=20% Similarity=0.096 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 241 EMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 241 dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
|.||+.+.+|+-..+++.+...+--..|++.-++-++|-.+|+-|.+.|.++++
T Consensus 572 delr~qi~el~~ive~lk~~~~kel~kl~~dleeek~mr~~lemei~~lkka~~ 625 (627)
T KOG4348|consen 572 DELRAQIIELLCIVEALKKDHGKELEKLRKDLEEEKTMRSNLEMEIEKLKKAVL 625 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHhh
Confidence 456666667776666666655554455555555555566666666666666654
No 406
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=57.62 E-value=82 Score=32.00 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 039489 240 VEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKE 281 (304)
Q Consensus 240 ~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~ 281 (304)
...+|++..++.++..++++.-+.-..++++.+.+.++.+++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~~~~~ 363 (429)
T PRK00247 322 APELHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINR 363 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777888888777777777777777777776666655
No 407
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=57.57 E-value=67 Score=31.53 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEGLFSTQ 265 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q 265 (304)
+.+.++-+++...+...++..++..+++.+.+
T Consensus 28 eel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~ 59 (330)
T PF07851_consen 28 EELSKLQDKCSSSISHQKKRLKELKKSLKRCK 59 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444555555555555555555555555554
No 408
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=57.56 E-value=33 Score=27.91 Aligned_cols=37 Identities=27% Similarity=0.263 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 262 FSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 262 ~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
....+-|+++.+++++.|++|+..++.|+..+.....
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~ 114 (123)
T cd04770 78 AEVRALLEEKLAEVEAKIAELQALRAELAGLLSACDG 114 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3445667777778888888888888887776655443
No 409
>PRK02793 phi X174 lysis protein; Provisional
Probab=57.51 E-value=61 Score=24.57 Aligned_cols=40 Identities=8% Similarity=0.000 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 246 DITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGL 289 (304)
Q Consensus 246 el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eL 289 (304)
++.-+-++.+++.+.+.+.|.++ ..+++.++.|.++.+++
T Consensus 16 ~lafQe~tIe~Ln~~v~~Qq~~I----~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 16 RLAFQEITIEELNVTVTAHEMEM----AKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhh
Confidence 33334444444444444444444 34444444444444444
No 410
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=57.49 E-value=51 Score=32.76 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 264 TQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 264 ~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
++++|.+.. +.++-+++++++.+.++++++.+..
T Consensus 261 l~~~l~~~~-k~~~k~~~~~~q~~~~~k~~~~~~~ 294 (406)
T PF02388_consen 261 LEEKLEKNP-KKKNKLKELEEQLASLEKRIEEAEE 294 (406)
T ss_dssp HHHHHHH-T-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334 6667788888888888888887754
No 411
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=57.36 E-value=36 Score=27.44 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
+.|++..++|++.+++|+...+.|+..+
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 82 ELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555554444
No 412
>PRK08724 fliD flagellar capping protein; Validated
Probab=57.28 E-value=40 Score=36.10 Aligned_cols=68 Identities=16% Similarity=0.256 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 230 VFKRNAVNKLVEMVHADI---TGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 230 ~~r~s~lsal~dkl~~el---~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
.++..+|++=.+.+..=. .-+..+.++.++.+.....-|..|.+-|++.+++|.++++.||++++.++
T Consensus 574 ~KL~~AL~~npd~V~~LF~g~~GlA~rL~~~L~~~~~t~G~I~~R~~sL~~~i~~l~dqi~~Le~Rle~~E 644 (673)
T PRK08724 574 DMLDRQLNNNFNKLEEFFGGNTGFAKRVEDAIQSMTGVTGSIRTREKSLREQNYRLNDDQVALDRRMESLE 644 (673)
T ss_pred HHHHHHHHhCHHHHHHHhcCCchHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666654444333211 22333444555554444455555555566666666666666666655443
No 413
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=57.28 E-value=76 Score=29.03 Aligned_cols=28 Identities=18% Similarity=0.276 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
++|-++-++++..|+.++.-.+.|.+.+
T Consensus 93 sdl~~ryek~K~vi~~~k~NEE~Lkk~~ 120 (207)
T PF05010_consen 93 SDLHKRYEKQKEVIEGYKKNEETLKKCI 120 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4444444444444444444433333333
No 414
>PRK04098 sec-independent translocase; Provisional
Probab=57.23 E-value=97 Score=27.28 Aligned_cols=45 Identities=11% Similarity=0.252 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 239 LVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQD 284 (304)
Q Consensus 239 l~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~ 284 (304)
...++|+-+...+.+.++|+. +..++.++++-++.|+...+.|+.
T Consensus 35 ~ir~~K~~~~~~k~~l~~Ei~-~~elk~e~~k~k~~l~~~~~~l~~ 79 (158)
T PRK04098 35 FFKAVKKTINDAKSTLDKEIN-IEEIKEEALKYKKEFESAVESLKK 79 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444442 223333333333334444444433
No 415
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=57.18 E-value=1.1e+02 Score=27.74 Aligned_cols=27 Identities=22% Similarity=0.430 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQ 292 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~ 292 (304)
..|+.+.+.|+.-+..|++|+++|.+.
T Consensus 103 ~~Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 103 KDLKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555543
No 416
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.16 E-value=45 Score=29.67 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 245 ADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQ 292 (304)
Q Consensus 245 ~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~ 292 (304)
.+.+++.++.++.+..|+.+-++|+.--..+++.+++.+++...|+..
T Consensus 132 ~Everi~~~ieE~v~eLe~~a~~lke~~~~i~~l~~~ik~~~~g~~~~ 179 (181)
T COG4345 132 EEVERIEKTIEELVSELESLANKLKEVTDVINSLVERIKQEHTGLKLK 179 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhhc
Confidence 344556666677777777777788888899999999999999888754
No 417
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=57.12 E-value=64 Score=25.44 Aligned_cols=50 Identities=10% Similarity=0.036 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 246 DITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQI 295 (304)
Q Consensus 246 el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~ 295 (304)
+++++..+..+..-.|-.++++...=..+|.+.|+.-++.+.++++.+.+
T Consensus 27 E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~~ 76 (83)
T PF03670_consen 27 EYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQLSK 76 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44555555555555555555555555566666666666677666666543
No 418
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=57.10 E-value=1e+02 Score=24.92 Aligned_cols=15 Identities=40% Similarity=0.614 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 039489 280 KELQDEREGLEQQLQ 294 (304)
Q Consensus 280 ~~L~~E~~eLe~~l~ 294 (304)
..|+.+...++..|+
T Consensus 91 ~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 91 EELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 419
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=57.08 E-value=72 Score=23.08 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 242 MVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDE 285 (304)
Q Consensus 242 kl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E 285 (304)
+.+.+-+......+..++.|..-...|+.+-+.|+..+..|+.+
T Consensus 19 ~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 19 RSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555555555555555555555555555555555555554
No 420
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=57.00 E-value=32 Score=30.72 Aligned_cols=51 Identities=24% Similarity=0.415 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 235 AVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDERE 287 (304)
Q Consensus 235 ~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~ 287 (304)
.|..++++++..+.+.. .+++++.+....++|...+.+++.-+++|+.|..
T Consensus 112 Mi~~L~~qvk~~~de~~--~~~~~~~l~~H~~kl~~~~ke~~~kLeeLekEe~ 162 (177)
T PF03234_consen 112 MIEDLLDQVKKEPDEKS--GKAELEELQEHRAKLEKEQKELKKKLEELEKEEK 162 (177)
T ss_pred HHHHHHHHHhcccCccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555544443333 6666677777767777777766666666666554
No 421
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=56.97 E-value=1.2e+02 Score=27.21 Aligned_cols=57 Identities=12% Similarity=0.198 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Q 039489 238 KLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGL--KELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 238 al~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I--~~L~~E~~eLe~~l~~l~~ 298 (304)
+-..+|..++.++-.+.+++.++.+..++|++. |+++| ++|+++..+|++.+..++.
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~----L~s~Lt~eemQe~i~~L~kev~~~~e 137 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKE----LSSALTTEEMQEEIQELKKEVAGYRE 137 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666666666666666654 34443 6777777777777765544
No 422
>PF06721 DUF1204: Protein of unknown function (DUF1204); InterPro: IPR009596 This family represents the C terminus of a number of Arabidopsis thaliana hypothetical proteins of unknown function. Family members contain a conserved DFD motif.
Probab=56.79 E-value=1.6e+02 Score=26.91 Aligned_cols=40 Identities=20% Similarity=0.181 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 039489 233 RNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRRE 272 (304)
Q Consensus 233 ~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~ 272 (304)
+..+-+--++.+.++++.+....++-+.+...+.+|+.++
T Consensus 31 ~~~~~~~~~r~~~d~~~~~~K~deLedr~~se~KRLRsrR 70 (228)
T PF06721_consen 31 RTVMGQERDRCQDDAEKMNVKFDELEDRISSEQKRLRSRR 70 (228)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555666666666666666666666665533
No 423
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=56.69 E-value=1e+02 Score=31.05 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039489 268 LRRREEEIDRGLKELQDEREGL 289 (304)
Q Consensus 268 L~~~~~~l~~~I~~L~~E~~eL 289 (304)
|+++++.|.+.+++.++|.+.|
T Consensus 354 Lrkerd~L~keLeekkreleql 375 (442)
T PF06637_consen 354 LRKERDSLAKELEEKKRELEQL 375 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333333333333
No 424
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=56.64 E-value=99 Score=35.08 Aligned_cols=23 Identities=43% Similarity=0.752 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039489 274 EIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
.++..|..++.++++|++++..+
T Consensus 874 ~l~~~l~~~~~~~~~l~~~l~~~ 896 (1163)
T COG1196 874 ELEDELKELEEEKEELEEELREL 896 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 425
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=56.60 E-value=37 Score=25.02 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
.+++++-+++++.++++++|.++|++.++.|
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555556666666666666666666665
No 426
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=56.59 E-value=1.2e+02 Score=25.38 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 264 TQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 264 ~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
+...+++.+++.+..+++|+.|.+.+++.+....
T Consensus 77 ik~~v~~~~e~~q~~~~~l~~ei~~~~~~~sd~~ 110 (115)
T COG4980 77 IKESVKKWKEDIQPEIERLKSEIEDLQEAISDET 110 (115)
T ss_pred HHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666667777777777777766554
No 427
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=56.47 E-value=95 Score=31.62 Aligned_cols=33 Identities=9% Similarity=0.032 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHH
Q 039489 233 RNAVNKLVEMVHADITGMRKARE-VEVEGLFSTQ 265 (304)
Q Consensus 233 ~s~lsal~dkl~~el~~l~~t~~-ae~e~l~~~q 265 (304)
+.+++.-.++|++|++.++.... |+++...+++
T Consensus 248 a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~ 281 (552)
T KOG2129|consen 248 AAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLM 281 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888899999988887643 4444444444
No 428
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=56.09 E-value=43 Score=32.56 Aligned_cols=61 Identities=11% Similarity=0.164 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 239 LVEMVHADITGMRKAREVEVEGLFSTQALLRRREE---EIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 239 l~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~---~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
....+..+++.+....++-+....+++.+.+.-+. ..++.|..|.+|+..++..++.+..+
T Consensus 243 ~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~ 306 (344)
T PF12777_consen 243 ELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQ 306 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 33445555555555555555555555533333333 33445566666666666666655443
No 429
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=56.08 E-value=1.2e+02 Score=25.53 Aligned_cols=19 Identities=26% Similarity=0.221 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039489 275 IDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 275 l~~~I~~L~~E~~eLe~~l 293 (304)
.++....|+.+.++-|+.|
T Consensus 98 y~~~~~~L~k~I~~~e~iI 116 (126)
T PF09403_consen 98 YKDLLNKLDKEIAEQEQII 116 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 430
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=56.03 E-value=85 Score=31.69 Aligned_cols=60 Identities=15% Similarity=0.236 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 237 NKLVEMVHADITGMRK---AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 237 sal~dkl~~el~~l~~---t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
++-...++.+++.+-. +.+++.+++..-+.+|...-.+|+....+|..+-+.+|++-+.+
T Consensus 143 t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~l 205 (499)
T COG4372 143 TKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNL 205 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555444 34444444444444444444555555555555555555544444
No 431
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=56.01 E-value=33 Score=28.36 Aligned_cols=35 Identities=31% Similarity=0.345 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 262 FSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 262 ~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
....+.|.+..+.+++.|++|+..++.|+..+...
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~ 112 (127)
T TIGR02044 78 ADVKARTLEKVAEIERKISELQSMRDQLEALAQAC 112 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445567777777777878877777777766544
No 432
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=55.98 E-value=1.3e+02 Score=26.99 Aligned_cols=31 Identities=26% Similarity=0.220 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 267 LLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 267 eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
|=+.+-++|..-=+.+++|.+|||.+|++-.
T Consensus 142 eER~EaeQLQsLR~avRqElqELE~QL~DRl 172 (179)
T PF14723_consen 142 EEREEAEQLQSLRSAVRQELQELEFQLEDRL 172 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666788888899988887643
No 433
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=55.96 E-value=70 Score=30.21 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
.|+..+-..|++.-+.|+.+.++|++++..|..
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~~ 250 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLRR 250 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666777667777777777766666643
No 434
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=55.94 E-value=79 Score=36.04 Aligned_cols=54 Identities=22% Similarity=0.343 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 242 MVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQI 295 (304)
Q Consensus 242 kl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~ 295 (304)
.+..++..+....++..+.+...++++++...++++.+..+++..++++..+..
T Consensus 820 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~ 873 (1201)
T PF12128_consen 820 ELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRR 873 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444555555555555555555555555555543
No 435
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=55.85 E-value=92 Score=23.95 Aligned_cols=49 Identities=8% Similarity=0.125 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 246 DITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 246 el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
-++++.++.+..-+.+..+..|..+=-++.++.+++.+.+.+.++...+
T Consensus 27 ~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~ 75 (90)
T PF06103_consen 27 TLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFE 75 (90)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3333333333333333333344444444444444444444444444333
No 436
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=55.84 E-value=1.6e+02 Score=26.73 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=17.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 226 DQTEVFKRNAVNKLVEMVHADITGMRK 252 (304)
Q Consensus 226 ~a~E~~r~s~lsal~dkl~~el~~l~~ 252 (304)
+..+-+..++.++..|++...-.++.+
T Consensus 55 ~e~~k~~~~i~da~~dq~~~~q~e~~~ 81 (192)
T COG3334 55 SEIEKFCANIADAAADQLYALQKELLE 81 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667888888888877554443333
No 437
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=55.82 E-value=86 Score=23.57 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=15.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 256 VEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 256 ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
+|...|..-++.+..++..|. ++++.-+..+|.-|+.|
T Consensus 21 ~EN~~Lr~q~~~~~~ER~~L~---ekne~Ar~rvEamI~RL 58 (65)
T TIGR02449 21 SENRLLRAQEKTWREERAQLL---EKNEQARQKVEAMITRL 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Confidence 333334444444444444433 33333334444444443
No 438
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=55.70 E-value=34 Score=28.22 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 263 STQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 263 ~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
...+-|++..+++++.|++|+..++.|+..++.+.
T Consensus 79 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 113 (126)
T cd04785 79 EADAIARAHLADVRARIADLRRLEAELKRMVAACS 113 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34556777777888888888888888877775544
No 439
>COG5293 Predicted ATPase [General function prediction only]
Probab=55.63 E-value=62 Score=33.30 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 274 EIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
-|-+.+..++.|.+|++.+|+.|...
T Consensus 383 ~l~ee~~~~~~elae~~~rie~l~k~ 408 (591)
T COG5293 383 TLCEEIIALRGELAELEYRIEPLRKL 408 (591)
T ss_pred HHHHHHHHHhhhHHHHHHhhhHHHHH
Confidence 34455666777777777777776543
No 440
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=55.61 E-value=44 Score=28.25 Aligned_cols=46 Identities=17% Similarity=0.219 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 243 VHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREG 288 (304)
Q Consensus 243 l~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~e 288 (304)
+=.||..+-.+.+++.+...++-.+|+.=+..+.+-|.++++..+.
T Consensus 79 vieELdqi~~~~~~~~d~K~kiL~dL~HLE~Vv~~KIaEIe~dlek 124 (125)
T PF11944_consen 79 VIEELDQITGREQAEVDLKQKILDDLRHLEKVVNSKIAEIERDLEK 124 (125)
T ss_pred HHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345666666788888888888888888777777666666655543
No 441
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=55.61 E-value=1.1e+02 Score=28.45 Aligned_cols=43 Identities=14% Similarity=0.291 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 250 MRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 250 l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
|....++|...|.+ |.-++.+++..++.|+.+.+.-++.||.|
T Consensus 51 Ll~~kd~ef~~llk----la~eq~k~e~~m~~Lea~VEkrD~~IQqL 93 (272)
T KOG4552|consen 51 LLDSKDDEFKTLLK----LAPEQQKREQLMRTLEAHVEKRDEVIQQL 93 (272)
T ss_pred HHHhccHHHHHHHH----HhHhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33444444444433 33344445555555555555444444444
No 442
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=55.48 E-value=1.3e+02 Score=29.73 Aligned_cols=65 Identities=17% Similarity=0.171 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 230 VFKRNAVNKLVEMVHADI-----------------TGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGL 289 (304)
Q Consensus 230 ~~r~s~lsal~dkl~~el-----------------~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eL 289 (304)
+++.+.+.+|.||.+.-| +.|++..++.-+.|...- .++.++-+.++.++..|+.+.++|
T Consensus 115 e~~Dskv~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~el 194 (405)
T KOG2010|consen 115 ELRDSKVSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEEL 194 (405)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888998887644 233333332222222111 455555556667777777777777
Q ss_pred HHHHH
Q 039489 290 EQQLQ 294 (304)
Q Consensus 290 e~~l~ 294 (304)
++.|.
T Consensus 195 Ke~l~ 199 (405)
T KOG2010|consen 195 KEGLR 199 (405)
T ss_pred HHHHH
Confidence 66653
No 443
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=55.44 E-value=1.4e+02 Score=29.08 Aligned_cols=68 Identities=24% Similarity=0.304 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 227 QTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGL-FSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 227 a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l-~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
.+|.+..+.|++..++|+.+-.++-.+.++|-+.+ ++++ ..|+++.......++.|.+|+-+||..|+
T Consensus 102 ~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE 173 (310)
T PF09755_consen 102 QEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLE 173 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Confidence 67778888888888888888777777766655543 3333 56666666667777777777777776654
No 444
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=55.43 E-value=83 Score=37.43 Aligned_cols=64 Identities=16% Similarity=0.053 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
.++....++|..+...+-...+.++..++.+|.-...+++...+.-.+|+.+.++|+.+++.++
T Consensus 755 ~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk 818 (1822)
T KOG4674|consen 755 LLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLK 818 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777777666666644444444444444444444444444444443
No 445
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=55.43 E-value=1e+02 Score=27.39 Aligned_cols=36 Identities=19% Similarity=0.121 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 039489 244 HADITGMRKAREVEVEGLFSTQALLRRREEEIDRGL 279 (304)
Q Consensus 244 ~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I 279 (304)
+.+|+.|++..++.-+.+..+..+|..-+.+|...+
T Consensus 28 ~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 28 QARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443
No 446
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=55.39 E-value=1.6e+02 Score=28.90 Aligned_cols=45 Identities=22% Similarity=0.172 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 039489 229 EVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREE 273 (304)
Q Consensus 229 E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~ 273 (304)
.++|+.+..+++.+..-|.+.++.+..++.+...+-|.+|+....
T Consensus 166 q~KraEieqKlEeq~~eE~e~l~~qe~~l~~~rr~r~~ElR~l~~ 210 (340)
T KOG3756|consen 166 QVKRAEIEQKLEEQAEEEREQLEKQERELLEERRARQTELRLLEQ 210 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666667777777777777777777777766666666665543
No 447
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=55.34 E-value=1.3e+02 Score=29.19 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 272 EEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 272 ~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
+...++.-++|..++..||.-|++++
T Consensus 63 ~~rYqR~y~ema~~L~~LeavLqRir 88 (324)
T PF12126_consen 63 EARYQRDYEEMAGQLGRLEAVLQRIR 88 (324)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33444455555555555555555443
No 448
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=55.32 E-value=43 Score=34.33 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 246 DITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 246 el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
+|+....+-++|++.|+.+..+|+ ......|..|++|++..|+....|..
T Consensus 450 Emdk~LskKeeeverLQ~lkgelE---kat~SALdlLkrEKe~~EqefLslqe 499 (527)
T PF15066_consen 450 EMDKTLSKKEEEVERLQQLKGELE---KATTSALDLLKREKETREQEFLSLQE 499 (527)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
No 449
>PRK14011 prefoldin subunit alpha; Provisional
Probab=55.31 E-value=92 Score=26.85 Aligned_cols=42 Identities=7% Similarity=0.184 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 039489 241 EMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKEL 282 (304)
Q Consensus 241 dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L 282 (304)
+-+.++++.+.+..+..-+.+.++++++++=+.+|+.-++.+
T Consensus 91 ~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~ 132 (144)
T PRK14011 91 EDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAI 132 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554444444444444444443
No 450
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=55.28 E-value=79 Score=26.56 Aligned_cols=33 Identities=12% Similarity=0.150 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 039489 238 KLVEMVHADITGMRKAREVEVEGLFSTQALLRR 270 (304)
Q Consensus 238 al~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~ 270 (304)
.+.++++.+.+...++.++..+.+.+.+++|.+
T Consensus 36 ~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~ 68 (158)
T PF03938_consen 36 DAQAKLQEKFKALQKELQAKQKELQKLQQKLQS 68 (158)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333344333
No 451
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=54.98 E-value=1.2e+02 Score=29.60 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhh
Q 039489 228 TEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLK----ELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 228 ~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~----~L~~E~~eLe~~l~~l~~ 298 (304)
.-++.-+-+....+|+-.|=+.|..+..-+|...++.+ ++++.+.+++..+++ .|.+=.+|+|+.-+.++.
T Consensus 249 ~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe 326 (384)
T KOG0972|consen 249 YLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEE 326 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666667777777777777777777777666 555555555555553 444444444444444443
No 452
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.84 E-value=74 Score=32.29 Aligned_cols=61 Identities=18% Similarity=0.121 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 235 AVNKLVEMVHADITGMRKAREVEVEGLFSTQ-------ALLRRREEEIDRGLKELQDEREGLEQQLQI 295 (304)
Q Consensus 235 ~lsal~dkl~~el~~l~~t~~ae~e~l~~~q-------~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~ 295 (304)
.+.+---+|++|++++++++.++-+++++.+ +.|-.+.+.-+..+..|+.+...+.+.++.
T Consensus 296 ~lqkegrqlqrdlE~~~~~r~ele~~~~qs~ed~t~q~~~ll~~~q~sE~ll~tlq~~iSqaq~~vq~ 363 (542)
T KOG0993|consen 296 ILQKEGRQLQRDLEELIETRAELEHTEQQSQEDITVQRAQLLEERQHSEDLLVTLQAEISQAQSEVQK 363 (542)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333345888999999999999988888876 233333333444455555555555554443
No 453
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=54.79 E-value=1.7e+02 Score=26.66 Aligned_cols=76 Identities=18% Similarity=0.226 Sum_probs=42.4
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhHHHHH-HHHHH---HHHHHHHHHHHHHHHHH
Q 039489 222 PQTEDQTEVFKRNAVNKLVEMVHADITGMRK----------AREVEVEGLFSTQ-ALLRR---REEEIDRGLKELQDERE 287 (304)
Q Consensus 222 ~~~~~a~E~~r~s~lsal~dkl~~el~~l~~----------t~~ae~e~l~~~q-~eL~~---~~~~l~~~I~~L~~E~~ 287 (304)
+.+++-+++.+++-|.++.+++..--++..+ ....|.|+|.+-. .+|.. +......+++.+++..+
T Consensus 91 ~~~~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~ 170 (195)
T PF12761_consen 91 TEGTDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLD 170 (195)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHH
Confidence 4567889999999998888887653333322 2244445554422 33333 22233344555555556
Q ss_pred HHHHHHHHHh
Q 039489 288 GLEQQLQIVL 297 (304)
Q Consensus 288 eLe~~l~~l~ 297 (304)
.+|+++..|+
T Consensus 171 ~ie~QV~~Le 180 (195)
T PF12761_consen 171 TIEEQVDGLE 180 (195)
T ss_pred HHHHHHHHHH
Confidence 6666555553
No 454
>PRK14143 heat shock protein GrpE; Provisional
Probab=54.54 E-value=87 Score=29.27 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039489 276 DRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 276 ~~~I~~L~~E~~eLe~~l~ 294 (304)
++.++.|=.=.+.|+++++
T Consensus 117 ~~~~~~lLpV~DnLerAl~ 135 (238)
T PRK14143 117 CNTLSEILPVVDNFERARQ 135 (238)
T ss_pred HHHHHHHHHHHhHHHHHHh
Confidence 3333333334444444443
No 455
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=54.52 E-value=1.2e+02 Score=25.85 Aligned_cols=65 Identities=23% Similarity=0.232 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 232 KRNAVNKLVEMVHADITGMRKAREVEVE----GLFSTQ--ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t~~ae~e----~l~~~q--~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
|=...-++.++|...+.-++...+.-.. .+..+- .+| -.+.|+.-|+.|++|+..|+.+|-.+.-
T Consensus 9 RYEtQ~E~N~QLekqi~~l~~kiek~r~n~~drl~siR~ye~M--s~~~l~~llkqLEkeK~~Le~qlk~~e~ 79 (129)
T PF15372_consen 9 RYETQLELNDQLEKQIIILREKIEKIRGNPSDRLSSIRRYEQM--SVESLNQLLKQLEKEKRSLENQLKDYEW 79 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467778888888887777665544322 222211 233 2357888888888888888888876643
No 456
>PF02212 GED: Dynamin GTPase effector domain; InterPro: IPR003130 Dynamin GTPase effector domain found in proteins related to dynamin. Dynamin is a GTP-hydrolysing protein that is an essential participant in clathrin-mediated endocytosis by cells. It self-assembles into 'collars' in vivo at the necks of invaginated coated pits; the self-assembly of dynamin being coordinated by the GTPase domain. Mutation studies indicate that dynamin functions as a molecular regulator of receptor-mediated endocytosis [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3ZYS_B 3SZR_A 3LJB_B 3T35_C 3T34_A 2X2F_D 2X2E_D 3SNH_A 3ZYC_D 3ZVR_A.
Probab=54.52 E-value=29 Score=27.07 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 235 AVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 235 ~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
++.+..+.++.+|-......+. ++.|.+-..+..++++++++.++.|++-.+.|.
T Consensus 36 lv~~~~~~L~~~l~~~l~~~~~-~~~Ll~Ed~~i~~kR~~l~~~~~~L~~A~~~L~ 90 (92)
T PF02212_consen 36 LVNKSKEQLQSELLNELYDEED-LEELLQEDPEIAEKREELKKKLERLKKAQQILS 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGG-CCCCT--GHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHhHHHHHHHHhccchHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333222222 444444456777777777777777766665553
No 457
>PRK04325 hypothetical protein; Provisional
Probab=54.49 E-value=72 Score=24.28 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 246 DITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 246 el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
+|+....-.+..++.|.+.-.+..+.-.+|++.++.|.++.++++
T Consensus 13 ~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 13 ELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 458
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=54.48 E-value=1.3e+02 Score=25.75 Aligned_cols=36 Identities=19% Similarity=0.133 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 262 FSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 262 ~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
.+-|..|+...+++...+..-+++.++|..+.+.+.
T Consensus 60 ~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR 95 (135)
T TIGR03495 60 EEAQAQLRQQLAQARALLAQREQRIERLKRENEDLR 95 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 445566666666555555555555555555555443
No 459
>PF15237 PTRF_SDPR: PTRF/SDPR family
Probab=54.46 E-value=42 Score=31.47 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=24.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 252 KAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQ 291 (304)
Q Consensus 252 ~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~ 291 (304)
+..-.-+|+.+..|..|++|+..++..|+..+.+...|-+
T Consensus 12 dKl~~~vD~vQ~~Q~~mE~RQ~emE~sV~~IQ~dl~KLsk 51 (246)
T PF15237_consen 12 DKLAGMVDSVQETQQRMEERQREMEGSVKGIQGDLTKLSK 51 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3333445566666666666666666666666666655543
No 460
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=54.43 E-value=1.4e+02 Score=31.04 Aligned_cols=41 Identities=15% Similarity=0.283 Sum_probs=23.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 256 VEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 256 ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
++++.+.+--.++++.+.++.+.|..|+.+..+....|..+
T Consensus 383 e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~ 423 (569)
T PRK04778 383 EELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERY 423 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445666666666666666666666665555554
No 461
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=54.40 E-value=80 Score=30.18 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 246 DITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 246 el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
.....++..+...+...++.+|+++..+..++..++|++|++.+=
T Consensus 47 ~~~~~~k~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L~~~k~~wf 91 (298)
T PF11262_consen 47 TISKKKKEKERLKNLIDKLPEELKKHQEHVEKVKKRLQEEKDSWF 91 (298)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 333445555555566666778888888888888899988887765
No 462
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=54.31 E-value=72 Score=32.09 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 274 EIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
++...+++|+++.++||+.+..++++
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~ 95 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAE 95 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566677777777777666554
No 463
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=54.21 E-value=40 Score=27.74 Aligned_cols=37 Identities=16% Similarity=0.101 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 262 FSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 262 ~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
....+-|++..+++++.|++|++-++.|+..+..+..
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~ 114 (127)
T cd04784 78 AEVNALIDEHLAHVRARIAELQALEKQLQALRERCDG 114 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3455667777777888888888777777776666544
No 464
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=54.21 E-value=59 Score=34.67 Aligned_cols=59 Identities=15% Similarity=0.271 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 232 KRNAVNKLVEMVHADIT---GMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 232 r~s~lsal~dkl~~el~---~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
+++-|++.+++||.++- +|-.+-=++|..+..+. .-|++++.+-++-++.-+.+.+|+.
T Consensus 151 kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn 215 (861)
T KOG1899|consen 151 KRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVN 215 (861)
T ss_pred HHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHH
Confidence 56778888888888763 34444455565555555 5566666666666655555555554
No 465
>PF15294 Leu_zip: Leucine zipper
Probab=54.12 E-value=1.2e+02 Score=29.07 Aligned_cols=48 Identities=8% Similarity=0.094 Sum_probs=37.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 039489 226 DQTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREE 273 (304)
Q Consensus 226 ~a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~ 273 (304)
++--.+-.++|.+-.++++.+++.+..+.-.-++...+++.+|+.-+.
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566778899999999999999998888888888888766655444
No 466
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=54.10 E-value=83 Score=31.12 Aligned_cols=26 Identities=38% Similarity=0.595 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 272 EEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 272 ~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
++.++..|.+++.+.++||++|+.|+
T Consensus 78 ~ema~~Ei~~~~~~~~~le~~L~~lL 103 (363)
T COG0216 78 REMAEEEIKELEAKIEELEEELKILL 103 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677888999999999999999885
No 467
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=53.99 E-value=98 Score=27.92 Aligned_cols=22 Identities=27% Similarity=0.367 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039489 272 EEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 272 ~~~l~~~I~~L~~E~~eLe~~l 293 (304)
+++|-..|.....|...|...+
T Consensus 56 e~~Lpqll~~h~eEvr~Lr~~L 77 (194)
T PF15619_consen 56 EAELPQLLQRHNEEVRVLRERL 77 (194)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 468
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=53.98 E-value=11 Score=38.76 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 273 EEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 273 ~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
++|++.|++|++|+++|++++++++.
T Consensus 34 e~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 34 EALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHhhcccccccchhhH
Confidence 34444444444554455555544443
No 469
>PRK00736 hypothetical protein; Provisional
Probab=53.90 E-value=81 Score=23.61 Aligned_cols=45 Identities=20% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 246 DITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 246 el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
+|+....-.++.++.|.++=.+-.+.-++|++.++.|.++.++++
T Consensus 9 ~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 9 ELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 470
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=53.89 E-value=2e+02 Score=27.17 Aligned_cols=73 Identities=11% Similarity=0.074 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhc
Q 039489 227 QTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQ-QLQIVLMN 299 (304)
Q Consensus 227 a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~-~l~~l~~~ 299 (304)
....++..-++.|+.+|-.++.+.....-++|..+.+++.+|..--..+.++=+.|+.-++++-+ .+..+...
T Consensus 35 ~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~ 108 (291)
T PF10475_consen 35 ELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQ 108 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
No 471
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=53.88 E-value=3e+02 Score=29.32 Aligned_cols=148 Identities=14% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 039489 147 DLVRELSACFSRE-PPLYSQRRPSPSPNSSPNPNPSHNQSNPAVMSNYGPSPSPQARPQPARPFPPSPYGGRPQPQPQTE 225 (304)
Q Consensus 147 ~Lv~~l~~~F~~~-pPl~~~~~~~~~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~pp~p~~~~~~~~~~~~ 225 (304)
+++..+...++.. -|.-+.|.+..-..+......++.|...+..+...+ .+|+++.-.....+.+....
T Consensus 257 ~ll~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 326 (656)
T PRK06975 257 RIVRAFLTWADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPP----------NPPATPPEPPARRGRGSAAL 326 (656)
T ss_pred HHHHHHHHHhhcccCCcccCCCCCCCCCCCcccCCCCCCCCCCcCCCCCC----------CCCCCCcCCccccccccHHH
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 039489 226 DQTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDILE 304 (304)
Q Consensus 226 ~a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~~ 304 (304)
-..-....=++-.-.--.+.++.++..+.....+.......|++...+++...++.++.+...||.+++........|+
T Consensus 327 ~~~~l~~~~~~g~~~~~~~q~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~ 405 (656)
T PRK06975 327 WFVVVVLACAAAVGGYALNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALE 405 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 472
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=53.85 E-value=38 Score=27.42 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 039489 260 GLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDIL 303 (304)
Q Consensus 260 ~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~ 303 (304)
.+.....-|+++.+.+++.+++|+++.+++++.++.+..+...+
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 84 SLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 473
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=53.81 E-value=53 Score=28.27 Aligned_cols=66 Identities=12% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 232 KRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
+|...+.-.....+|++++..+.....+....++++|++.+++++..-..|---.+.+-+-+..|.
T Consensus 67 LretfsNFssst~aEvqaL~S~G~sl~~kVtSLea~lEkqqQeLkAdhS~lllhvk~~~~DLr~Ls 132 (138)
T PF03954_consen 67 LRETFSNFSSSTLAEVQALSSQGGSLQDKVTSLEAKLEKQQQELKADHSTLLLHVKQFPKDLRSLS 132 (138)
T ss_pred HHHHHhcccHHHHHHHHHHHhccccHHhHcccHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
No 474
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=53.77 E-value=55 Score=28.34 Aligned_cols=48 Identities=27% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 252 KAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 252 ~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
...++-++-|.+--.+|++..++++.+|.+|.++...+++.++.+..+
T Consensus 90 ~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 90 KSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 475
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=53.71 E-value=62 Score=32.85 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 235 AVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 235 ~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
.|....+.+..+++.+.++.+++-+.+.+.+++|+++=..+|..|.+|+....-|..+++
T Consensus 403 ~l~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~mns~~s~L~~q~~ 462 (462)
T PRK08032 403 IIKTATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQFE 462 (462)
T ss_pred cchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 476
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=53.67 E-value=48 Score=32.96 Aligned_cols=68 Identities=19% Similarity=0.179 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 227 QTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 227 a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
+.|..|----.+.++++-.|++--+....++++...+.|.-|+.+-+.|+++++.|+....-+..+.+
T Consensus 230 aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~pNeq 297 (561)
T KOG1103|consen 230 AAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRPNEQ 297 (561)
T ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcccc
No 477
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=53.65 E-value=1.5e+02 Score=25.72 Aligned_cols=61 Identities=11% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 233 RNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 233 ~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
.+.|.+--+++..++++..+..++-.+.+.+.+++|..-+.+.+.++.+.+.+-+.+...+
T Consensus 45 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~ 105 (174)
T PRK07352 45 GKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEI 105 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 478
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=53.62 E-value=35 Score=29.39 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 242 MVHADITGMRKARE-------VEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 242 kl~~el~~l~~t~~-------ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
++|+|+.+++.+.. +|+.+|...-..+.+.-..++..+++-++|..+=...+
T Consensus 59 qlq~dl~tLretfsNFssst~aEvqaL~S~G~sl~~kVtSLea~lEkqqQeLkAdhS~l 117 (138)
T PF03954_consen 59 QLQRDLRTLRETFSNFSSSTLAEVQALSSQGGSLQDKVTSLEAKLEKQQQELKADHSTL 117 (138)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhccccHHhHcccHHHHHHHHHHHHhhhHHHH
No 479
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=53.57 E-value=1.1e+02 Score=30.30 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 039489 238 KLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDIL 303 (304)
Q Consensus 238 al~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~ 303 (304)
.-...||.++.....+....-..+..++.+|++-++-|++.=+.|++-++.++.++..|..+-+.|
T Consensus 322 ~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 322 KTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 480
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=53.57 E-value=1.1e+02 Score=24.70 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 039489 238 KLVEMVHADITGMRKAREVEVEGLFSTQ-ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDILE 304 (304)
Q Consensus 238 al~dkl~~el~~l~~t~~ae~e~l~~~q-~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~~ 304 (304)
+.....+.+++..+++.+.|++.|...- +|=.+--....+.-..++.+...|++++......-++|.
T Consensus 4 ~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq 71 (100)
T PF06428_consen 4 EEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQ 71 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=53.54 E-value=1e+02 Score=35.21 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 231 FKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRR---REEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 231 ~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~---~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
++.+....-++.++..|.+.+...++...++.++..+|.+ +-.+.++.+..|..+...|...+..++.+
T Consensus 514 ~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqr 585 (1293)
T KOG0996|consen 514 SRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQR 585 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
No 482
>PRK04406 hypothetical protein; Provisional
Probab=53.32 E-value=75 Score=24.34 Aligned_cols=45 Identities=11% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 246 DITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 246 el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
+|+....-.++.++.|.++-.+..+.-+.|.+.++.|.++.++++
T Consensus 15 ~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 15 DLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 483
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.31 E-value=91 Score=34.26 Aligned_cols=62 Identities=16% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 238 KLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 238 al~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
+-.+...-.++.+++..+.+++.+.+-..+|+.+.++++..+.....+...|++++..|+..
T Consensus 653 e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~q 714 (970)
T KOG0946|consen 653 EELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQ 714 (970)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=53.29 E-value=46 Score=37.87 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 039489 232 KRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDI 302 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~ 302 (304)
+.+-+..--+++..+...|-.+.++|++....++.+|+-+.+.++. +.++++.+++...+..+..+.+.
T Consensus 743 ~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~t--~~~Ekq~~~~~~~l~~~K~~~e~ 811 (1317)
T KOG0612|consen 743 KLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVNT--KMLEKQLKKLLDELAELKKQLEE 811 (1317)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhcc--HHHHHHHHHHHHHHHHHHHHHHH
No 485
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=53.26 E-value=93 Score=23.19 Aligned_cols=52 Identities=25% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 039489 253 AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDILE 304 (304)
Q Consensus 253 t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~~ 304 (304)
..++-++.|..--+-++.--++|++.|.+.+++.+.|++.+..|..+-.-++
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 486
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.22 E-value=99 Score=35.54 Aligned_cols=74 Identities=19% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 039489 230 VFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDILE 304 (304)
Q Consensus 230 ~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~~ 304 (304)
...-..+.+..++++.+++.|..+..+.-+...++...+. .+.+++..|++|..+.+++...++.+...-.-|.
T Consensus 842 ~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~-~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~ 915 (1311)
T TIGR00606 842 VSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ-RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLE 915 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
No 487
>PRK00846 hypothetical protein; Provisional
Probab=53.14 E-value=1.1e+02 Score=23.82 Aligned_cols=57 Identities=11% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
++-+.-.+.==.+|+....-.++.+|.|.++-.+..+.-+++.+.|+.|.++.++++
T Consensus 5 ~~~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 5 SLRDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 488
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=53.13 E-value=58 Score=29.80 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 229 EVFKRNAVNKLVEMVHADITG-------------MRKAREVEVEGLFSTQ-ALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 229 E~~r~s~lsal~dkl~~el~~-------------l~~t~~ae~e~l~~~q-~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
+.+..++|.+=-+.++.=+.. +..+.++.++...... .-|..+...+++.++.++++.+.++++++
T Consensus 138 ~~kl~~Al~~np~~V~~lF~~~~~~~~~~~~~~Gi~~~l~~~l~~~~~~~~G~i~~~~~~l~~~~~~~~~~i~~~~~rl~ 217 (239)
T PF07195_consen 138 ETKLDKALAENPDAVQALFAGDGTKDGTVYSTSGIATRLNDYLDSYTGSSTGSITSRIDSLNSQIKSLDKQIEDLEERLE 217 (239)
T ss_pred HHHHHHHHhhCHHHHHHHHccCccccccccccccHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhc
Q 039489 295 IVLMN 299 (304)
Q Consensus 295 ~l~~~ 299 (304)
..+..
T Consensus 218 ~~~~~ 222 (239)
T PF07195_consen 218 SKEER 222 (239)
T ss_pred HHHHH
No 489
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=53.05 E-value=68 Score=33.38 Aligned_cols=61 Identities=23% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 238 KLVEMVHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 238 al~dkl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
+....+..+++++.+..++..+.+.... ++++.+-+++.+.++.++.++.++...|+.|..
T Consensus 348 ~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk 411 (569)
T PRK04778 348 ESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRK 411 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=53.05 E-value=4.5 Score=41.76 Aligned_cols=68 Identities=22% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDIL 303 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~ 303 (304)
|-.++|=+|-||+++....+-=.....+...+|.+++..-+..|+.|..+.++||+.|.....+...+
T Consensus 454 Lgk~~d~iqEDid~M~~El~~W~~e~~~~~~~l~~e~~~t~~~~~pl~~~L~ele~~I~~~~~~i~~~ 521 (539)
T PF10243_consen 454 LGKLMDYIQEDIDSMQKELEMWRSEYRQHAEALQEEQSITDEALEPLKAQLAELEQQIKDQQDKICAV 521 (539)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=53.04 E-value=62 Score=24.68 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489 258 VEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSD 301 (304)
Q Consensus 258 ~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~ 301 (304)
+....+.+...++|++++...|+++.++.+.++....++...-+
T Consensus 27 lK~~~~re~~~~~RE~kyq~~I~~lte~~~~~~~~~~dv~ei~~ 70 (71)
T PF10960_consen 27 LKENKKREEKQEEREEKYQEQIEKLTEKLNVIEEIKEDVKEIKE 70 (71)
T ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 492
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=53.00 E-value=1e+02 Score=30.90 Aligned_cols=60 Identities=12% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 240 VEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 240 ~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
..+.....++|..+.+.......+.+..|.+...++++.+..++.+..+++++++.|...
T Consensus 62 ~~~~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~ 121 (390)
T PRK10920 62 AQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDELQQK 121 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=52.92 E-value=40 Score=29.30 Aligned_cols=61 Identities=16% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 039489 243 VHADITGMRKAREVEVEGLFSTQ-----ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDIL 303 (304)
Q Consensus 243 l~~el~~l~~t~~ae~e~l~~~q-----~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~ 303 (304)
+..++..++++.+..|.|..... .++.+.-+++++.+++++++.++|++.+.....+--++
T Consensus 21 ~~~kl~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kvgvv 86 (151)
T PF14584_consen 21 LNIKLRKLKRRYDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQKVGVV 86 (151)
T ss_pred HHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEE
No 494
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=52.91 E-value=85 Score=34.46 Aligned_cols=73 Identities=15% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 039489 232 KRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDILE 304 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~~ 304 (304)
....+.+..+.++.+++.+....++....+..++ ..++...+.+++.++.++.+.+++++.++.+....+.++
T Consensus 692 ~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~~ 767 (1179)
T TIGR02168 692 KIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=52.91 E-value=40 Score=27.95 Aligned_cols=57 Identities=16% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489 245 ADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSD 301 (304)
Q Consensus 245 ~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~ 301 (304)
.+++++.......-.+.....+-|++..+++++.|++|+..++.|++.+........
T Consensus 61 ~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~~~~ 117 (127)
T TIGR02047 61 AEIRQLLRYQDKPEKSCSDVNALLDEHISHVRARIIKLQALIEQLVDLRGRCNGLCT 117 (127)
T ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
No 496
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=52.84 E-value=1.1e+02 Score=29.56 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHH
Q 039489 232 KRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRG--------------------LKELQDEREGLEQ 291 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~--------------------I~~L~~E~~eLe~ 291 (304)
+...+.+-.+.++.+++.+..+.+...+.+..++++|+.-++++++. +..++.+..+++.
T Consensus 138 ~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~ 217 (423)
T TIGR01843 138 RKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEA 217 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHH
Q ss_pred HHHHHhhcccccC
Q 039489 292 QLQIVLMNSDILE 304 (304)
Q Consensus 292 ~l~~l~~~~~~~~ 304 (304)
++..+..+.+.++
T Consensus 218 ~l~~~~~~l~~~~ 230 (423)
T TIGR01843 218 ELEVLKRQIDELQ 230 (423)
T ss_pred HHHHHHHHHHHHH
No 497
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=52.81 E-value=1.5e+02 Score=26.92 Aligned_cols=71 Identities=11% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 229 EVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 229 E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
+..-..+|++=.|-|-++.-+.+...++..+.+...-..++..-++++..|++|+++.++++..-..|...
T Consensus 72 ~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar 142 (219)
T TIGR02977 72 QEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIR 142 (219)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=52.77 E-value=30 Score=26.87 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
.+|.++..+|++-|++|+.|.+++.+.-+...+
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk~d 35 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKREFQIKED 35 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
No 499
>PRK10869 recombination and repair protein; Provisional
Probab=52.75 E-value=75 Score=33.08 Aligned_cols=76 Identities=13% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHh
Q 039489 229 EVFKRNAVNKLVE--MVHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQD------EREGLEQQLQIVL 297 (304)
Q Consensus 229 E~~r~s~lsal~d--kl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~------E~~eLe~~l~~l~ 297 (304)
...++.+|++..+ .+..+.++.....++....+.+++ .+..++.+-++-.|+++++ |.++|+....+|.
T Consensus 139 ~~~~~~lLD~~~~~~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~ 218 (553)
T PRK10869 139 PEHQKTLLDAYANETSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLA 218 (553)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Q ss_pred hcccccC
Q 039489 298 MNSDILE 304 (304)
Q Consensus 298 ~~~~~~~ 304 (304)
..-.+.+
T Consensus 219 n~e~i~~ 225 (553)
T PRK10869 219 NSGQLLT 225 (553)
T ss_pred HHHHHHH
No 500
>PRK04325 hypothetical protein; Provisional
Probab=52.74 E-value=1e+02 Score=23.48 Aligned_cols=52 Identities=6% Similarity=0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 233 RNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQD 284 (304)
Q Consensus 233 ~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~ 284 (304)
.+.+.+-.+.|..++.-+-++.+++.+.+.+.|.++.+-+.++....++|++
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!