Query 039489
Match_columns 304
No_of_seqs 194 out of 290
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 17:24:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039489.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039489hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3obq_A Tumor susceptibility ge 100.0 3.9E-46 1.3E-50 318.1 12.3 139 15-166 8-146 (146)
2 3r3q_A Suppressor protein STP2 100.0 6.5E-44 2.2E-48 309.2 13.1 145 9-161 9-159 (162)
3 3iv1_A Tumor susceptibility ge 99.5 1.7E-13 5.8E-18 104.4 10.0 68 234-301 3-70 (78)
4 3iv1_A Tumor susceptibility ge 99.2 6.6E-11 2.2E-15 90.1 8.0 71 224-294 4-77 (78)
5 2gjd_A Ubiquitin-conjugating e 99.0 3.9E-09 1.3E-13 90.2 12.2 107 41-158 9-122 (157)
6 2grr_A Ubiquitin-conjugating e 99.0 5.7E-09 1.9E-13 89.5 12.4 107 41-158 12-125 (161)
7 2aak_A UBC1, ubiquitin conjuga 98.9 2E-08 6.7E-13 85.3 12.3 102 41-158 9-115 (152)
8 2a7l_A Hypothetical ubiquitin- 98.9 1.9E-08 6.7E-13 84.2 11.7 108 41-157 27-136 (136)
9 1z2u_A Ubiquitin-conjugating e 98.9 2.1E-08 7.3E-13 84.9 11.8 102 41-158 9-115 (150)
10 2c4o_A Ubiquitin-conjugating e 98.8 2.8E-08 9.5E-13 85.7 12.0 77 73-158 53-130 (165)
11 2fo3_A Ubiquitin-conjugating e 98.8 4.2E-08 1.4E-12 80.7 12.0 107 41-158 11-118 (125)
12 1jat_A Ubiquitin-conjugating e 98.8 3.4E-08 1.2E-12 84.1 11.8 102 41-158 10-116 (155)
13 2e2c_A Ubiquitin conjugating e 98.8 4.8E-08 1.7E-12 83.3 12.6 106 41-158 14-120 (156)
14 2c2v_B Ubiquitin-conjugating e 98.8 3.9E-08 1.3E-12 83.8 11.8 106 41-158 10-116 (154)
15 2h2y_A Ubiquitin-conjugating e 98.8 7.3E-08 2.5E-12 80.5 12.3 107 41-158 25-132 (136)
16 1zdn_A Ubiquitin-conjugating e 98.8 4.9E-08 1.7E-12 83.5 11.3 77 73-158 47-124 (158)
17 1ayz_A UBC2, ubiquitin-conjuga 98.8 7.2E-08 2.5E-12 83.5 12.2 79 71-158 32-115 (169)
18 2bep_A Ubiquitin-conjugating e 98.8 3.2E-08 1.1E-12 84.6 9.8 76 74-158 46-123 (159)
19 2r0j_A Ubiquitin carrier prote 98.8 6.8E-08 2.3E-12 81.7 11.7 79 71-158 29-112 (149)
20 2ayv_A Ubiquitin-conjugating e 98.8 8.7E-08 3E-12 82.7 12.5 106 41-158 26-132 (166)
21 1i7k_A Ubiquitin-conjugating e 98.7 7.8E-08 2.7E-12 84.1 11.7 102 41-158 35-141 (179)
22 4gpr_A Ubiquitin-conjugating e 98.7 1.2E-07 4E-12 80.5 12.4 106 41-158 9-115 (151)
23 1y8x_A Ubiquitin-conjugating e 98.7 6.2E-08 2.1E-12 83.1 10.1 73 77-158 42-115 (160)
24 3h8k_A Ubiquitin-conjugating e 98.7 1.3E-07 4.6E-12 81.0 12.1 106 41-158 8-128 (164)
25 2nvu_C NEDD8-conjugating enzym 98.7 6.6E-08 2.3E-12 84.6 10.3 73 77-158 62-135 (180)
26 3bzh_A Ubiquitin-conjugating e 98.7 1.3E-07 4.6E-12 83.6 12.4 76 74-158 83-159 (194)
27 3rcz_B SUMO-conjugating enzyme 98.7 1.8E-07 6.1E-12 80.5 12.6 107 41-158 15-128 (163)
28 1wzv_A Ubiquitin-conjugating e 98.7 1.3E-07 4.5E-12 80.4 11.4 103 41-158 9-116 (155)
29 1fxt_A Ubiquitin-conjugating e 98.7 1.1E-07 3.6E-12 80.5 10.7 76 74-158 37-114 (149)
30 1c4z_D UBCH7, ubiquitin conjug 98.7 4.8E-08 1.6E-12 83.0 8.0 79 71-158 31-114 (154)
31 2ucz_A UBC7, ubiquitin conjuga 98.6 7.9E-08 2.7E-12 82.6 8.7 76 74-158 40-129 (165)
32 1yh2_A HSPC150 protein similar 98.6 2.8E-07 9.5E-12 79.6 12.1 76 74-158 39-119 (169)
33 2pwq_A Ubiquitin conjugating e 98.6 1.5E-07 5E-12 84.7 10.6 102 41-158 28-135 (216)
34 3o2u_A NEDD8-conjugating enzym 98.6 1.1E-07 3.7E-12 83.8 9.2 76 74-158 65-144 (190)
35 2q0v_A Ubiquitin-conjugating e 98.6 7.1E-08 2.4E-12 82.6 7.4 76 74-158 60-138 (156)
36 1yrv_A Ubiquitin-conjugating l 98.6 3E-07 1E-11 79.6 11.4 105 41-158 28-137 (169)
37 2y9m_A Ubiquitin-conjugating e 98.6 4.1E-07 1.4E-11 78.8 11.8 78 73-158 52-132 (172)
38 2f4z_A Tgtwinscan_2721 - E2 do 98.6 2.9E-07 1E-11 81.4 11.0 79 71-158 73-157 (193)
39 4ds2_A Ubiquitin-conjugating e 98.6 3.7E-07 1.3E-11 78.7 11.3 80 70-158 51-134 (167)
40 3fn1_B NEDD8-conjugating enzym 98.6 3.2E-07 1.1E-11 78.9 10.7 73 77-158 52-131 (167)
41 2awf_A Ubiquitin-conjugating e 98.6 1.7E-07 5.8E-12 81.3 9.0 106 41-158 22-142 (172)
42 3rz3_A Ubiquitin-conjugating e 98.5 2E-07 6.7E-12 81.6 8.7 106 41-158 12-132 (183)
43 3k9o_A Ubiquitin-conjugating e 98.5 2.5E-07 8.7E-12 81.9 9.6 76 74-158 43-120 (201)
44 1jat_B Ubiquitin-conjugating e 98.5 1.4E-07 4.9E-12 78.8 7.4 77 73-158 44-123 (138)
45 2a4d_A Ubiquitin-conjugating e 98.5 2.1E-07 7.4E-12 80.0 8.6 77 73-158 63-143 (160)
46 2f4w_A Ubiquitin-conjugating e 98.5 5.6E-07 1.9E-11 79.1 11.4 100 41-158 19-126 (187)
47 2hlw_A Ubiquitin-conjugating e 98.5 2E-07 6.9E-12 80.8 8.4 77 73-158 73-153 (170)
48 3e46_A Ubiquitin-conjugating e 98.5 3.1E-07 1.1E-11 84.4 9.5 76 74-158 95-172 (253)
49 3ceg_A Baculoviral IAP repeat- 98.5 8.3E-07 2.8E-11 84.2 12.6 117 41-162 81-208 (323)
50 1tte_A Ubiquitin-conjugating e 98.5 1.5E-07 5.2E-12 84.5 7.0 75 75-158 39-115 (215)
51 1zuo_A Hypothetical protein LO 98.5 1.6E-07 5.6E-12 82.5 6.4 80 71-159 58-156 (186)
52 2onu_A Ubiquitin-conjugating e 98.4 7.6E-07 2.6E-11 75.7 9.4 78 71-157 27-111 (152)
53 2z5d_A Ubiquitin-conjugating e 98.4 3.3E-07 1.1E-11 80.1 5.8 76 73-157 55-133 (179)
54 1yf9_A Ubiquitin carrier prote 98.4 3.1E-07 1.1E-11 79.6 5.4 101 41-157 17-120 (171)
55 4ddg_A Ubiquitin-conjugating e 98.4 2.7E-06 9.1E-11 82.7 12.1 102 41-158 8-114 (399)
56 2p22_A Suppressor protein STP2 97.7 5.7E-05 2E-09 65.7 7.0 71 230-300 15-86 (174)
57 2z6o_A UFM1-conjugating enzyme 97.6 3.5E-05 1.2E-09 66.6 3.7 59 86-149 81-143 (172)
58 2p22_A Suppressor protein STP2 97.2 0.00047 1.6E-08 59.9 6.4 68 236-303 10-82 (174)
59 3kpa_A Probable ubiquitin fold 96.2 0.0014 4.7E-08 55.8 1.3 58 76-140 73-130 (168)
60 2jee_A YIIU; FTSZ, septum, coi 95.8 0.097 3.3E-06 39.9 10.1 36 266-301 44-79 (81)
61 3trt_A Vimentin; cytoskeleton, 95.7 0.073 2.5E-06 39.5 9.0 65 237-301 8-73 (77)
62 2fxo_A Myosin heavy chain, car 92.8 1.7 5.7E-05 35.3 11.7 61 236-296 39-102 (129)
63 3hnw_A Uncharacterized protein 92.6 1 3.5E-05 37.4 10.2 25 274-298 107-131 (138)
64 3mq9_A Bone marrow stromal ant 92.4 0.98 3.4E-05 43.5 11.5 60 240-299 406-465 (471)
65 3oja_B Anopheles plasmodium-re 92.2 0.87 3E-05 44.9 11.0 22 278-299 559-580 (597)
66 3mq7_A Bone marrow stromal ant 91.9 2.5 8.4E-05 34.2 11.1 54 248-301 49-102 (121)
67 2dfs_A Myosin-5A; myosin-V, in 91.5 1.1 3.8E-05 48.5 11.7 36 262-297 1008-1043(1080)
68 3oja_B Anopheles plasmodium-re 90.5 1.7 5.8E-05 42.8 11.2 9 284-292 544-552 (597)
69 3he5_B Synzip2; heterodimeric 90.2 1.3 4.5E-05 29.7 6.8 37 258-294 12-48 (52)
70 2v66_B Nuclear distribution pr 89.7 1.4 4.8E-05 35.3 8.0 64 231-294 3-73 (111)
71 2v66_B Nuclear distribution pr 89.5 6.1 0.00021 31.6 11.5 30 272-301 37-66 (111)
72 2pnv_A Small conductance calci 89.3 0.53 1.8E-05 31.6 4.4 33 263-295 9-41 (43)
73 3hnw_A Uncharacterized protein 89.1 3.8 0.00013 33.8 10.5 56 240-295 77-135 (138)
74 1nkp_B MAX protein, MYC proto- 88.4 0.45 1.5E-05 35.7 3.9 70 227-296 8-80 (83)
75 2q6q_A Spindle POLE BODY compo 88.3 4 0.00014 29.9 8.7 55 245-299 6-60 (74)
76 2v71_A Nuclear distribution pr 88.0 3 0.0001 36.4 9.5 12 286-297 104-115 (189)
77 3tnu_A Keratin, type I cytoske 88.0 5.1 0.00017 32.5 10.5 54 237-290 44-97 (131)
78 3tnu_B Keratin, type II cytosk 87.7 6.4 0.00022 31.7 10.8 53 237-289 42-94 (129)
79 1wt6_A Myotonin-protein kinase 87.4 3.4 0.00012 31.2 8.2 8 234-241 14-21 (81)
80 2zqm_A Prefoldin beta subunit 87.3 7.4 0.00025 30.1 10.8 36 264-299 71-106 (117)
81 3mq7_A Bone marrow stromal ant 86.9 6.6 0.00023 31.6 10.1 21 276-296 70-90 (121)
82 4dnd_A Syntaxin-10, SYN10; str 86.9 3.4 0.00012 33.8 8.7 58 242-299 31-96 (130)
83 1go4_E MAD1 (mitotic arrest de 86.7 3.3 0.00011 32.6 8.2 61 238-298 12-96 (100)
84 3oja_A Leucine-rich immune mol 86.6 4.1 0.00014 39.3 10.7 49 246-294 425-473 (487)
85 1x79_B RAB GTPase binding effe 86.5 6.1 0.00021 31.7 9.8 56 241-296 9-64 (112)
86 3na7_A HP0958; flagellar bioge 86.4 7.3 0.00025 34.8 11.6 36 261-296 134-169 (256)
87 3m0d_C TNF receptor-associated 86.0 7 0.00024 28.0 9.1 61 232-293 4-64 (65)
88 2w6a_A ARF GTPase-activating p 85.6 4.3 0.00015 29.0 7.4 44 246-289 17-60 (63)
89 1fxk_A Prefoldin; archaeal pro 85.6 10 0.00035 28.9 10.8 36 264-299 66-101 (107)
90 3u1c_A Tropomyosin alpha-1 cha 85.5 7.5 0.00026 30.2 9.8 11 286-296 88-98 (101)
91 2dfs_A Myosin-5A; myosin-V, in 85.2 3.3 0.00011 44.8 10.0 13 284-296 1023-1035(1080)
92 2eqb_B RAB guanine nucleotide 85.1 6.4 0.00022 30.8 9.0 59 239-297 27-89 (97)
93 3na7_A HP0958; flagellar bioge 84.8 5.8 0.0002 35.5 10.1 47 253-299 119-165 (256)
94 3m9b_A Proteasome-associated A 84.1 1.3 4.4E-05 40.3 5.3 41 258-298 56-96 (251)
95 2w83_C C-JUN-amino-terminal ki 84.1 11 0.00036 28.2 9.3 23 243-265 7-29 (77)
96 3u06_A Protein claret segregat 83.4 3.7 0.00013 39.7 8.6 58 241-302 6-63 (412)
97 1t3j_A Mitofusin 1; coiled coi 83.4 7.3 0.00025 30.4 8.6 43 234-276 39-81 (96)
98 3u59_A Tropomyosin beta chain; 83.4 11 0.00037 29.2 9.8 12 285-296 87-98 (101)
99 1ic2_A Tropomyosin alpha chain 83.2 11 0.00036 28.0 9.3 11 242-252 10-20 (81)
100 2jee_A YIIU; FTSZ, septum, coi 83.2 8.3 0.00028 29.1 8.6 61 238-298 6-69 (81)
101 3nmd_A CGMP dependent protein 83.1 2.9 9.8E-05 31.0 5.9 20 279-298 42-61 (72)
102 3swf_A CGMP-gated cation chann 82.4 10 0.00034 28.2 8.6 50 237-286 6-55 (74)
103 3mq9_A Bone marrow stromal ant 82.1 11 0.00038 36.0 11.5 10 286-295 445-454 (471)
104 3q8t_A Beclin-1; autophagy, AT 81.8 2.8 9.5E-05 32.5 5.8 59 239-297 19-80 (96)
105 2v71_A Nuclear distribution pr 81.8 18 0.00062 31.4 11.5 68 229-296 54-128 (189)
106 3ni0_A Bone marrow stromal ant 81.4 17 0.00058 28.3 10.5 47 249-299 43-89 (99)
107 1wle_A Seryl-tRNA synthetase; 81.3 11 0.00036 37.5 11.2 32 266-297 119-150 (501)
108 2v4h_A NF-kappa-B essential mo 81.0 14 0.00049 29.4 9.6 23 280-302 86-108 (110)
109 2ke4_A CDC42-interacting prote 80.8 12 0.00041 29.1 9.1 69 230-298 14-90 (98)
110 2xzr_A Immunoglobulin-binding 80.7 18 0.00063 28.2 11.0 38 256-293 52-89 (114)
111 2no2_A HIP-I, huntingtin-inter 80.6 19 0.00065 28.3 10.6 45 254-298 49-96 (107)
112 2dq0_A Seryl-tRNA synthetase; 80.4 11 0.00036 36.9 10.7 33 266-298 72-104 (455)
113 2wt7_B Transcription factor MA 80.0 18 0.00062 27.8 10.1 33 266-298 51-83 (90)
114 1d7m_A Cortexillin I; coiled-c 80.0 11 0.00036 29.2 8.2 56 248-303 21-86 (101)
115 3qne_A Seryl-tRNA synthetase, 79.4 12 0.00041 37.0 10.7 33 266-298 74-106 (485)
116 1gmj_A ATPase inhibitor; coile 79.2 14 0.00049 28.0 8.7 16 281-296 62-77 (84)
117 4h22_A Leucine-rich repeat fli 79.0 13 0.00046 29.2 8.8 51 243-293 28-81 (103)
118 3i00_A HIP-I, huntingtin-inter 78.8 16 0.00055 29.4 9.6 55 236-290 20-78 (120)
119 1gk4_A Vimentin; intermediate 78.7 11 0.00039 28.1 8.2 13 284-296 61-73 (84)
120 1deq_A Fibrinogen (alpha chain 78.4 7.8 0.00027 37.2 8.7 12 266-277 116-127 (390)
121 2oxj_A Hybrid alpha/beta pepti 77.3 3.8 0.00013 25.9 4.1 28 271-298 2-29 (34)
122 3ghg_A Fibrinogen alpha chain; 77.3 4.8 0.00016 40.2 7.1 10 267-276 114-123 (562)
123 1kd8_B GABH BLL, GCN4 acid bas 76.4 4 0.00014 26.1 4.1 26 272-297 3-28 (36)
124 1m1j_B Fibrinogen beta chain; 76.3 19 0.00066 35.4 11.2 20 278-297 169-188 (464)
125 1ses_A Seryl-tRNA synthetase; 76.3 9.2 0.00032 36.9 8.8 33 266-298 67-99 (421)
126 3m91_A Proteasome-associated A 76.0 13 0.00046 25.5 7.1 31 266-296 19-49 (51)
127 1nkp_A C-MYC, MYC proto-oncoge 75.9 23 0.00079 26.7 9.4 70 228-297 13-86 (88)
128 1m1j_B Fibrinogen beta chain; 75.8 17 0.00057 35.8 10.5 52 241-292 103-154 (464)
129 1ci6_A Transcription factor AT 75.7 11 0.00038 26.7 7.0 41 254-294 21-61 (63)
130 1wt6_A Myotonin-protein kinase 75.4 24 0.00081 26.6 9.8 17 252-268 17-33 (81)
131 1nlw_A MAD protein, MAX dimeri 75.3 17 0.00058 27.0 8.2 69 227-295 7-79 (80)
132 3c3f_A Alpha/beta peptide with 75.3 4.6 0.00016 25.5 4.1 27 271-297 2-28 (34)
133 2yy0_A C-MYC-binding protein; 75.1 3.8 0.00013 28.5 4.2 30 240-269 21-50 (53)
134 3cvf_A Homer-3, homer protein 75.1 15 0.0005 27.7 7.7 45 246-290 14-65 (79)
135 1x79_B RAB GTPase binding effe 74.6 29 0.00099 27.7 9.8 42 261-302 61-102 (112)
136 1gd2_E Transcription factor PA 74.3 19 0.00065 26.3 8.0 35 253-287 33-67 (70)
137 1kd8_A GABH AIV, GCN4 acid bas 74.2 3.4 0.00012 26.5 3.3 24 273-296 4-27 (36)
138 3lay_A Zinc resistance-associa 74.1 32 0.0011 29.4 10.7 26 234-259 74-99 (175)
139 3swy_A Cyclic nucleotide-gated 74.0 14 0.00048 24.9 6.7 40 238-277 5-44 (46)
140 3gp4_A Transcriptional regulat 73.8 12 0.0004 30.5 7.7 31 266-296 84-114 (142)
141 1x8y_A Lamin A/C; structural p 73.6 7.2 0.00025 29.4 5.8 37 232-268 15-51 (86)
142 2w6b_A RHO guanine nucleotide 73.5 21 0.0007 25.0 7.7 28 270-297 24-51 (56)
143 2ebm_A RWD domain-containing p 73.4 12 0.00042 29.4 7.5 22 89-110 56-77 (128)
144 3tnu_B Keratin, type II cytosk 73.3 34 0.0011 27.4 10.3 25 272-296 70-94 (129)
145 3c3g_A Alpha/beta peptide with 73.0 5.7 0.0002 24.9 4.1 25 273-297 3-27 (33)
146 3a7p_A Autophagy protein 16; c 72.4 31 0.0011 28.9 9.9 38 254-291 87-124 (152)
147 3uux_B Mitochondrial division 72.4 28 0.00096 31.3 10.2 53 251-303 172-224 (242)
148 3tnu_A Keratin, type I cytoske 72.3 25 0.00086 28.2 9.3 16 279-294 79-94 (131)
149 3m48_A General control protein 72.1 4.6 0.00016 25.4 3.5 26 273-298 3-28 (33)
150 2wq1_A General control protein 72.0 6.2 0.00021 24.8 4.1 25 273-297 3-27 (33)
151 2fxo_A Myosin heavy chain, car 71.4 38 0.0013 27.1 10.9 22 275-296 95-116 (129)
152 2hy6_A General control protein 71.1 5.5 0.00019 25.2 3.7 27 272-298 3-29 (34)
153 3gpv_A Transcriptional regulat 71.0 10 0.00035 31.1 6.7 34 263-296 95-128 (148)
154 3lss_A Seryl-tRNA synthetase; 71.0 25 0.00084 34.8 10.5 30 269-298 109-139 (484)
155 3o0z_A RHO-associated protein 70.6 24 0.00082 30.1 9.0 22 275-296 53-74 (168)
156 1yke_B RNA polymerase II holoe 70.5 5.7 0.0002 33.3 5.0 45 253-297 86-130 (151)
157 3s9g_A Protein hexim1; cyclin 70.2 37 0.0013 26.5 9.3 71 227-297 6-85 (104)
158 1d7m_A Cortexillin I; coiled-c 70.1 35 0.0012 26.3 9.0 14 280-293 77-90 (101)
159 3cve_A Homer protein homolog 1 69.8 30 0.001 25.4 9.5 20 272-291 41-60 (72)
160 2wt7_A Proto-oncogene protein 69.6 25 0.00084 24.8 7.6 39 255-293 22-60 (63)
161 4etp_A Kinesin-like protein KA 69.3 17 0.00057 34.9 8.7 57 242-302 7-63 (403)
162 2p22_C Protein SRN2; endosome, 69.2 49 0.0017 28.6 10.9 65 233-298 75-149 (192)
163 2j69_A Bacterial dynamin-like 69.2 15 0.00052 37.5 8.9 19 264-282 635-653 (695)
164 2day_A Ring finger protein 25; 69.0 27 0.00093 27.3 8.6 23 89-111 60-82 (128)
165 4i0x_B ESAT-6-like protein MAB 68.8 35 0.0012 25.7 9.0 64 232-295 19-85 (103)
166 1ykh_B RNA polymerase II holoe 68.6 7.9 0.00027 31.6 5.4 44 253-296 86-129 (132)
167 1nkp_A C-MYC, MYC proto-oncoge 68.0 36 0.0012 25.6 8.8 11 284-294 66-76 (88)
168 2xu6_A MDV1 coiled coil; prote 67.5 35 0.0012 25.2 8.4 53 251-303 16-68 (72)
169 3htk_A Structural maintenance 66.9 28 0.00095 23.9 8.6 39 241-279 8-46 (60)
170 1cii_A Colicin IA; bacteriocin 66.9 79 0.0027 31.3 12.7 59 239-297 350-411 (602)
171 2bni_A General control protein 66.8 7.5 0.00026 24.6 3.7 26 272-297 3-28 (34)
172 3ol1_A Vimentin; structural ge 66.6 46 0.0016 26.3 9.5 26 241-266 44-69 (119)
173 2akf_A Coronin-1A; coiled coil 66.3 15 0.0005 22.6 4.8 25 270-294 6-30 (32)
174 3ol1_A Vimentin; structural ge 65.8 48 0.0017 26.2 11.0 8 289-296 88-95 (119)
175 3nmd_A CGMP dependent protein 65.6 26 0.00088 25.8 7.1 24 274-297 44-67 (72)
176 2daw_A RWD domain containing p 65.1 5 0.00017 33.2 3.6 23 89-111 76-98 (154)
177 1t3j_A Mitofusin 1; coiled coi 64.8 31 0.0011 26.8 7.8 67 226-296 24-90 (96)
178 2ve7_A Kinetochore protein HEC 64.6 6.9 0.00024 36.4 4.8 13 144-156 102-114 (315)
179 1ik9_A DNA repair protein XRCC 64.4 61 0.0021 28.4 10.7 19 144-162 62-81 (213)
180 4fla_A Regulation of nuclear P 64.1 62 0.0021 26.9 11.2 66 233-298 70-142 (152)
181 2xnx_M M protein, M1-BC1; cell 64.1 60 0.0021 27.0 9.9 45 259-303 69-113 (146)
182 2oqq_A Transcription factor HY 64.1 7.7 0.00026 25.7 3.5 19 270-288 17-35 (42)
183 3etw_A Adhesin A; antiparallel 64.1 49 0.0017 26.6 9.1 28 274-301 72-99 (119)
184 3trt_A Vimentin; cytoskeleton, 63.9 38 0.0013 24.4 10.2 58 235-296 17-75 (77)
185 3bas_A Myosin heavy chain, str 63.6 45 0.0015 25.1 9.1 27 272-298 58-84 (89)
186 2pnv_A Small conductance calci 63.3 5.4 0.00019 26.6 2.8 29 274-302 6-34 (43)
187 3t97_C Nuclear pore glycoprote 63.2 16 0.00054 26.3 5.4 44 257-300 13-56 (64)
188 2avr_X Adhesion A; antiparalle 63.1 53 0.0018 26.4 9.1 26 274-299 72-97 (119)
189 4dac_A Computationally designe 63.1 3.7 0.00012 24.3 1.6 22 274-295 5-26 (28)
190 1q08_A Zn(II)-responsive regul 63.1 15 0.00052 27.3 5.8 36 262-297 38-73 (99)
191 2k48_A Nucleoprotein; viral pr 62.9 15 0.00053 28.9 5.7 34 258-291 34-67 (107)
192 1uo4_A General control protein 62.7 10 0.00034 24.0 3.7 25 273-297 4-28 (34)
193 3s9g_A Protein hexim1; cyclin 62.4 50 0.0017 25.8 8.5 50 246-295 41-90 (104)
194 3myf_A Sensor protein; HPT, hi 62.4 47 0.0016 26.0 8.8 72 228-299 18-115 (119)
195 2eqb_B RAB guanine nucleotide 61.9 54 0.0018 25.5 11.6 52 242-293 9-63 (97)
196 3pwx_A Putative flagellar HOOK 61.9 40 0.0014 29.7 9.2 55 244-298 173-227 (239)
197 2dq3_A Seryl-tRNA synthetase; 61.8 12 0.00042 36.1 6.1 33 266-298 71-103 (425)
198 3plt_A Sphingolipid long chain 61.7 45 0.0015 29.9 9.3 49 251-299 89-146 (234)
199 3efg_A Protein SLYX homolog; x 61.4 25 0.00085 26.1 6.5 37 254-290 26-62 (78)
200 2lw1_A ABC transporter ATP-bin 61.3 42 0.0014 25.1 7.9 27 242-268 19-45 (89)
201 1t2k_D Cyclic-AMP-dependent tr 61.2 38 0.0013 23.5 9.0 39 255-293 21-59 (61)
202 4gkw_A Spindle assembly abnorm 61.0 65 0.0022 26.6 9.4 22 231-252 53-74 (167)
203 3viq_B Mating-type switching p 61.0 22 0.00076 27.0 6.2 55 241-296 4-60 (85)
204 3vkg_A Dynein heavy chain, cyt 60.9 30 0.001 41.7 10.2 61 232-292 1911-1974(3245)
205 2lf0_A Uncharacterized protein 60.7 14 0.00047 29.9 5.2 22 266-287 39-60 (123)
206 3ghg_A Fibrinogen alpha chain; 60.2 23 0.00078 35.4 7.7 8 243-250 69-76 (562)
207 3zrx_A AF1503 protein, osmolar 60.1 43 0.0015 23.8 8.4 71 228-298 38-112 (115)
208 1lq7_A Alpha3W; three helix bu 59.6 20 0.00067 25.1 5.2 11 283-293 54-64 (67)
209 1m1j_A Fibrinogen alpha subuni 59.5 55 0.0019 32.2 10.1 21 279-299 134-154 (491)
210 3qh9_A Liprin-beta-2; coiled-c 59.4 45 0.0015 25.1 7.5 50 246-295 27-76 (81)
211 1f5n_A Interferon-induced guan 58.9 34 0.0012 34.5 9.1 43 254-296 503-549 (592)
212 2efk_A CDC42-interacting prote 58.8 94 0.0032 27.3 11.2 39 237-275 94-132 (301)
213 1cxz_B Protein (PKN); protein- 58.7 58 0.002 24.7 8.3 31 268-298 54-84 (86)
214 4emc_A Monopolin complex subun 58.7 77 0.0026 27.4 10.0 48 239-286 21-68 (190)
215 3he5_A Synzip1; heterodimeric 58.6 36 0.0012 22.4 6.8 41 253-293 7-47 (49)
216 2efl_A Formin-binding protein 58.5 95 0.0032 27.2 11.7 18 259-276 123-140 (305)
217 1t3u_A Conserved hypothetical 58.5 44 0.0015 25.5 7.8 34 266-299 64-97 (104)
218 2oqq_A Transcription factor HY 57.9 30 0.001 22.9 5.5 31 267-297 7-37 (42)
219 3brv_B NF-kappa-B essential mo 57.7 53 0.0018 24.0 8.6 48 247-294 10-57 (70)
220 1s1c_X RHO-associated, coiled- 57.5 51 0.0017 24.2 7.4 29 243-271 4-32 (71)
221 2yo3_A General control protein 57.4 58 0.002 29.7 9.4 50 249-298 209-258 (268)
222 2yz0_A Serine/threonine-protei 56.8 11 0.00037 30.2 4.1 24 88-111 62-85 (138)
223 2ocy_A RAB guanine nucleotide 56.7 87 0.003 26.2 10.7 15 248-262 78-92 (154)
224 3he4_A Synzip6; heterodimeric 56.7 8 0.00027 26.2 2.7 29 264-292 25-53 (56)
225 3uun_A Dystrophin; triple heli 56.6 54 0.0018 24.3 8.0 64 234-297 46-116 (119)
226 3etw_A Adhesin A; antiparallel 56.5 76 0.0026 25.5 9.3 22 272-293 77-98 (119)
227 1m1j_A Fibrinogen alpha subuni 56.5 60 0.0021 31.9 9.9 21 274-294 136-156 (491)
228 3mtu_A Tropomyosin alpha-1 cha 56.3 36 0.0012 25.0 6.5 13 287-299 54-66 (75)
229 1jnm_A Proto-oncogene C-JUN; B 56.2 18 0.00061 25.4 4.7 25 266-290 32-56 (62)
230 2ic6_A Nucleocapsid protein; h 56.2 20 0.00067 26.9 5.0 20 278-297 53-72 (78)
231 3mud_A DNA repair protein XRCC 56.1 57 0.0019 28.0 8.6 13 144-156 65-77 (175)
232 1gd2_E Transcription factor PA 55.6 57 0.0019 23.7 7.7 48 248-295 21-68 (70)
233 1nlw_A MAD protein, MAX dimeri 55.4 48 0.0016 24.5 7.2 22 275-296 52-73 (80)
234 1hjb_A Ccaat/enhancer binding 55.2 57 0.002 24.7 7.7 29 266-294 46-74 (87)
235 3ibp_A Chromosome partition pr 55.1 1.3E+02 0.0045 27.8 11.7 71 227-298 13-104 (302)
236 3bas_A Myosin heavy chain, str 55.1 64 0.0022 24.2 11.8 48 246-293 39-86 (89)
237 3uul_A Utrophin; spectrin repe 54.9 63 0.0021 24.0 8.2 64 234-297 46-116 (118)
238 2zvf_A Alanyl-tRNA synthetase; 54.8 8 0.00027 32.0 3.1 14 274-287 43-56 (171)
239 1u00_A HSC66, chaperone protei 54.1 74 0.0025 27.6 9.5 25 238-262 132-156 (227)
240 1ik9_A DNA repair protein XRCC 54.0 82 0.0028 27.5 9.7 24 242-265 150-173 (213)
241 3vem_A Helicase protein MOM1; 53.7 80 0.0027 25.2 8.5 41 240-283 41-85 (115)
242 1uix_A RHO-associated kinase; 53.5 63 0.0022 23.7 8.1 26 245-270 4-29 (71)
243 3a2a_A Voltage-gated hydrogen 53.5 42 0.0014 23.5 6.0 40 254-293 9-48 (58)
244 2c5k_T Syntaxin TLG1, T-snare 53.5 22 0.00075 27.3 5.2 28 272-299 38-65 (95)
245 3vmx_A Voltage-gated hydrogen 53.3 50 0.0017 22.4 7.1 36 258-293 6-41 (48)
246 1lwu_C Fibrinogen gamma chain; 53.2 35 0.0012 32.0 7.4 19 275-293 38-56 (323)
247 2bnx_A Diaphanous protein homo 53.0 1.7 5.9E-05 41.5 -1.5 48 243-290 338-385 (386)
248 2r2v_A GCN4 leucine zipper; co 52.9 23 0.00077 22.4 4.1 24 273-296 4-27 (34)
249 1jnm_A Proto-oncogene C-JUN; B 52.7 51 0.0017 23.0 6.7 22 275-296 27-48 (62)
250 3m91_A Proteasome-associated A 52.5 53 0.0018 22.5 6.9 36 242-277 13-48 (51)
251 3iox_A AGI/II, PA; alpha helix 52.5 1.4E+02 0.005 29.4 12.0 25 274-298 84-108 (497)
252 3l4f_A RHO guanine nucleotide 52.4 28 0.00096 24.9 5.1 34 266-299 17-50 (61)
253 4i0x_B ESAT-6-like protein MAB 52.3 71 0.0024 23.9 10.7 58 232-289 26-86 (103)
254 3swk_A Vimentin; cytoskeleton, 52.2 72 0.0024 23.9 10.1 25 241-265 24-48 (86)
255 1lwu_B Fibrinogen beta chain; 52.1 15 0.00052 34.4 4.8 19 272-290 37-55 (323)
256 2yy0_A C-MYC-binding protein; 52.1 26 0.0009 24.1 4.9 21 257-277 20-40 (53)
257 1q06_A Transcriptional regulat 51.9 28 0.00095 27.9 5.9 35 262-296 78-112 (135)
258 2ba2_A D12_ORF131, hypothetica 51.7 75 0.0026 24.0 9.5 37 255-291 46-82 (85)
259 4ad8_A DNA repair protein RECN 51.5 53 0.0018 31.9 8.9 69 230-298 164-241 (517)
260 2fup_A Hypothetical protein PA 51.2 60 0.002 26.0 7.9 7 279-285 55-61 (157)
261 2d4y_A HAP1, flagellar HOOK-as 50.9 1.1E+02 0.0039 29.2 11.0 66 232-297 72-149 (463)
262 3mov_A Lamin-B1; LMNB1, B-type 50.7 24 0.00083 27.1 5.0 33 264-296 49-84 (95)
263 1wle_A Seryl-tRNA synthetase; 50.5 74 0.0025 31.4 9.8 26 274-299 120-145 (501)
264 2akf_A Coronin-1A; coiled coil 50.1 29 0.00099 21.2 4.1 21 257-277 7-27 (32)
265 4e81_A Chaperone protein DNAK; 50.0 1.3E+02 0.0043 26.1 10.4 28 237-264 134-161 (219)
266 3s4r_A Vimentin; alpha-helix, 49.6 83 0.0028 23.9 11.2 21 275-295 61-81 (93)
267 1q08_A Zn(II)-responsive regul 49.5 37 0.0013 25.1 5.9 22 266-287 49-70 (99)
268 3he4_A Synzip6; heterodimeric 49.5 58 0.002 22.0 6.3 28 272-299 19-46 (56)
269 4dnd_A Syntaxin-10, SYN10; str 49.2 1E+02 0.0035 24.8 9.1 11 266-276 105-115 (130)
270 3ljm_A Coil Ser L9C; de novo d 49.0 9 0.00031 23.1 1.7 13 275-287 13-25 (31)
271 2p22_C Protein SRN2; endosome, 49.0 74 0.0025 27.4 8.4 60 234-293 52-113 (192)
272 4gkw_A Spindle assembly abnorm 48.4 1.1E+02 0.0039 25.1 10.8 53 246-298 106-161 (167)
273 4fla_A Regulation of nuclear P 48.2 1.2E+02 0.004 25.2 9.9 63 234-296 82-147 (152)
274 1l8d_A DNA double-strand break 47.9 55 0.0019 25.0 6.8 22 274-295 75-96 (112)
275 2e7s_A RAB guanine nucleotide 47.8 40 0.0014 27.7 6.1 21 276-296 88-108 (135)
276 3zcc_A HAMP, osmolarity sensor 47.6 73 0.0025 22.6 8.2 70 228-297 38-111 (114)
277 2nrj_A HBL B protein; enteroto 47.5 1.6E+02 0.0056 27.3 11.3 64 236-299 121-191 (346)
278 3hd7_A Vesicle-associated memb 47.5 56 0.0019 24.6 6.6 11 242-252 9-19 (91)
279 1m1j_C Fibrinogen gamma chain; 47.4 1.2E+02 0.0041 29.2 10.4 24 234-258 38-61 (409)
280 3oa7_A Head morphogenesis prot 47.3 60 0.002 28.4 7.4 30 271-300 45-74 (206)
281 2aze_B Transcription factor E2 47.2 19 0.00065 28.3 4.0 31 253-283 10-40 (106)
282 2ve7_C Kinetochore protein NUF 47.0 24 0.00083 31.6 5.2 41 230-270 120-166 (250)
283 1wlq_A Geminin; coiled-coil; 2 47.0 63 0.0021 24.4 6.6 6 232-237 29-34 (83)
284 3lay_A Zinc resistance-associa 46.8 1.3E+02 0.0045 25.4 10.3 13 245-257 92-104 (175)
285 3sjb_C Golgi to ER traffic pro 46.7 94 0.0032 23.9 7.7 21 266-286 52-72 (93)
286 3m0a_A TNF receptor-associated 46.6 72 0.0024 22.3 8.2 47 247-293 17-63 (66)
287 3qks_A DNA double-strand break 46.3 40 0.0014 28.4 6.3 52 244-296 140-194 (203)
288 3mtu_A Tropomyosin alpha-1 cha 46.0 68 0.0023 23.4 6.6 28 257-284 3-30 (75)
289 1f5n_A Interferon-induced guan 45.8 84 0.0029 31.6 9.5 16 284-299 567-582 (592)
290 2p90_A Hypothetical protein CG 45.4 40 0.0014 31.2 6.6 20 268-287 248-267 (319)
291 1a93_B MAX protein, coiled coi 45.4 36 0.0012 21.5 4.2 20 274-293 11-30 (34)
292 1t98_A KICB protein, chromosom 45.4 1.4E+02 0.0047 27.1 9.7 70 232-301 174-261 (287)
293 3v86_A De novo design helix; c 45.3 38 0.0013 19.8 4.0 20 269-288 6-25 (27)
294 3s4r_A Vimentin; alpha-helix, 45.3 98 0.0033 23.4 10.3 36 255-290 55-90 (93)
295 3qne_A Seryl-tRNA synthetase, 45.2 79 0.0027 31.2 8.9 26 274-299 75-100 (485)
296 3nr7_A DNA-binding protein H-N 45.1 94 0.0032 23.4 7.4 15 269-283 55-69 (86)
297 4etp_A Kinesin-like protein KA 44.7 86 0.0029 29.9 9.0 40 235-274 7-46 (403)
298 3sjb_C Golgi to ER traffic pro 44.7 43 0.0015 25.9 5.5 15 263-277 67-81 (93)
299 1hlo_A Protein (transcription 44.6 23 0.00077 26.0 3.9 19 279-297 59-77 (80)
300 2dq0_A Seryl-tRNA synthetase; 44.5 64 0.0022 31.3 8.1 26 274-299 73-98 (455)
301 2dgc_A Protein (GCN4); basic d 44.5 79 0.0027 22.3 6.6 22 275-296 35-56 (63)
302 1fxk_C Protein (prefoldin); ar 44.4 43 0.0015 26.5 5.8 31 266-296 11-41 (133)
303 1ses_A Seryl-tRNA synthetase; 44.4 80 0.0027 30.3 8.7 26 274-299 68-93 (421)
304 2kho_A Heat shock protein 70; 44.4 95 0.0033 30.9 9.6 61 238-298 523-593 (605)
305 2ic9_A Nucleocapsid protein; h 44.3 27 0.00094 27.1 4.3 27 266-296 45-71 (96)
306 1gmj_A ATPase inhibitor; coile 44.1 1E+02 0.0035 23.3 10.4 8 247-254 42-49 (84)
307 2wt7_B Transcription factor MA 44.0 1.1E+02 0.0036 23.4 10.6 48 249-296 41-88 (90)
308 1ukx_A GCN2, GCN2 EIF2alpha ki 43.9 9.7 0.00033 30.3 1.9 22 89-110 64-85 (137)
309 3onj_A T-snare VTI1; helix, HA 43.8 1E+02 0.0035 23.3 8.9 61 232-299 32-95 (97)
310 4b9q_A Chaperone protein DNAK; 43.7 1.5E+02 0.0051 29.4 10.9 27 237-263 522-548 (605)
311 2aze_B Transcription factor E2 43.6 35 0.0012 26.7 5.0 25 266-290 16-40 (106)
312 1l8d_A DNA double-strand break 43.6 1E+02 0.0036 23.3 9.9 31 266-296 74-104 (112)
313 2v0o_A FCHO2, FCH domain only 43.5 1.6E+02 0.0054 25.4 10.0 33 247-279 110-142 (276)
314 1gu4_A CAAT/enhancer binding p 43.5 97 0.0033 22.9 7.7 25 266-290 46-70 (78)
315 3swk_A Vimentin; cytoskeleton, 43.5 1E+02 0.0034 23.0 9.7 35 263-297 36-76 (86)
316 3w03_C DNA repair protein XRCC 43.4 56 0.0019 28.2 6.7 14 144-157 82-95 (184)
317 2dax_A Protein C21ORF6; RWD do 43.2 13 0.00043 30.4 2.5 23 89-111 74-96 (152)
318 3f6n_A Virion-associated prote 43.1 46 0.0016 26.9 5.6 55 235-289 6-60 (129)
319 3haj_A Human pacsin2 F-BAR; pa 43.0 1.4E+02 0.0047 28.8 10.3 25 256-280 133-157 (486)
320 1gl2_A Endobrevin; membrane pr 42.9 71 0.0024 22.4 6.2 33 258-290 8-40 (65)
321 1ic2_A Tropomyosin alpha chain 42.9 96 0.0033 22.7 11.8 22 244-265 5-26 (81)
322 4e81_A Chaperone protein DNAK; 42.8 1.5E+02 0.0052 25.6 9.6 9 124-132 90-98 (219)
323 2ve7_A Kinetochore protein HEC 42.4 27 0.00092 32.3 4.9 19 145-164 110-128 (315)
324 3opc_A Uncharacterized protein 42.2 95 0.0033 24.9 7.8 56 236-291 9-69 (154)
325 2l5g_B Putative uncharacterize 42.2 66 0.0022 21.2 5.3 21 272-292 18-38 (42)
326 3opc_A Uncharacterized protein 42.1 1.3E+02 0.0045 24.1 9.1 19 234-252 18-36 (154)
327 2b5u_A Colicin E3; high resolu 42.0 1.8E+02 0.0062 28.9 10.7 38 263-300 335-372 (551)
328 3iqt_A Signal transduction his 41.8 85 0.0029 24.7 7.2 27 228-254 27-53 (123)
329 2qag_C Septin-7; cell cycle, c 41.7 5.5 0.00019 38.4 0.0 13 128-140 167-179 (418)
330 2e7s_A RAB guanine nucleotide 41.7 74 0.0025 26.1 6.8 20 273-292 63-82 (135)
331 3hhm_B NISH2 P85alpha; PI3KCA, 41.6 2.2E+02 0.0075 26.8 11.2 12 143-154 78-89 (373)
332 2w83_C C-JUN-amino-terminal ki 41.6 1.1E+02 0.0036 22.8 9.4 17 277-293 58-74 (77)
333 2l5g_B Putative uncharacterize 41.5 63 0.0022 21.3 5.1 32 267-298 6-37 (42)
334 3lof_A Heat shock 70 kDa prote 41.4 42 0.0015 25.7 5.2 19 279-297 61-79 (113)
335 2wvr_A Geminin; DNA replicatio 41.3 74 0.0025 27.9 7.1 9 231-239 105-113 (209)
336 1r8e_A Multidrug-efflux transp 41.2 42 0.0014 29.3 5.8 34 264-297 80-113 (278)
337 3ra3_B P2F; coiled coil domain 41.1 34 0.0012 20.1 3.4 21 269-289 6-26 (28)
338 2efr_A General control protein 41.1 1.6E+02 0.0054 24.6 9.9 30 266-295 87-116 (155)
339 3hh0_A Transcriptional regulat 40.9 42 0.0014 27.3 5.3 32 266-297 83-114 (146)
340 1lwu_C Fibrinogen gamma chain; 40.9 64 0.0022 30.1 7.2 25 274-298 30-54 (323)
341 2ebk_A RWD domain-containing p 40.7 11 0.00036 29.8 1.6 22 89-110 57-78 (128)
342 1sfc_A VAMP 2, protein (synapt 40.6 81 0.0028 24.1 6.6 13 266-278 68-80 (96)
343 3ljm_A Coil Ser L9C; de novo d 40.5 55 0.0019 19.6 4.3 21 275-295 6-26 (31)
344 2ocy_A RAB guanine nucleotide 40.3 1.6E+02 0.0055 24.5 11.9 15 276-290 100-114 (154)
345 3i00_A HIP-I, huntingtin-inter 40.3 1.4E+02 0.0048 23.8 11.5 48 238-285 15-62 (120)
346 1aq5_A Matrilin-1, CMP, cartil 40.3 46 0.0016 22.5 4.4 27 272-298 18-44 (47)
347 3iyk_A VP5; icosahedral virus; 40.3 1.4E+02 0.0048 29.6 9.7 29 266-294 178-206 (526)
348 2etd_A LEMA protein; bromodoma 40.1 1.4E+02 0.0046 25.2 8.6 19 278-296 104-122 (171)
349 2f8x_M MAM-1, mastermind-like 40.1 1E+02 0.0034 22.1 8.8 37 237-273 6-42 (63)
350 2nps_D Syntaxin-6; vesicle fus 40.0 1.1E+02 0.0037 22.4 8.1 46 235-280 30-75 (82)
351 1sfc_A VAMP 2, protein (synapt 39.9 1.2E+02 0.0042 23.0 7.8 15 242-256 34-48 (96)
352 1n7s_A Vesicle-associated memb 39.8 92 0.0031 21.6 6.6 16 264-279 9-24 (63)
353 2i1j_A Moesin; FERM, coiled-co 39.7 35 0.0012 34.2 5.5 13 44-56 190-202 (575)
354 3r2p_A Apolipoprotein A-I; amp 39.5 1.7E+02 0.0057 24.5 10.3 8 245-252 89-96 (185)
355 3gp4_A Transcriptional regulat 39.3 1.3E+02 0.0045 24.1 8.1 37 259-295 84-120 (142)
356 3kqg_A Langerin, C-type lectin 39.3 34 0.0012 27.9 4.6 13 236-248 4-16 (182)
357 4ati_A MITF, microphthalmia-as 39.2 36 0.0012 27.0 4.5 74 227-301 33-115 (118)
358 3iox_A AGI/II, PA; alpha helix 39.0 2.5E+02 0.0087 27.7 11.3 23 241-263 33-55 (497)
359 2pms_C Pneumococcal surface pr 39.0 78 0.0027 25.6 6.5 22 274-295 65-86 (125)
360 1lq7_A Alpha3W; three helix bu 38.7 97 0.0033 21.5 6.1 14 246-259 26-39 (67)
361 3lss_A Seryl-tRNA synthetase; 38.7 96 0.0033 30.5 8.4 21 279-299 113-133 (484)
362 3l4q_C Phosphatidylinositol 3- 38.7 1.3E+02 0.0044 25.6 8.1 45 241-285 99-146 (170)
363 1ez3_A Syntaxin-1A; three heli 38.6 1.3E+02 0.0045 23.0 10.1 61 234-294 15-78 (127)
364 3m9b_A Proteasome-associated A 38.5 36 0.0012 30.8 4.8 24 266-289 71-94 (251)
365 3fx7_A Putative uncharacterize 38.4 1.3E+02 0.0043 23.2 7.3 24 234-257 16-39 (94)
366 1a93_A Coiled coil, LZ, MYC pr 38.1 50 0.0017 20.8 4.1 27 255-281 6-32 (34)
367 3q8t_A Beclin-1; autophagy, AT 37.9 1.3E+02 0.0045 22.8 10.8 19 271-289 33-51 (96)
368 1m1j_C Fibrinogen gamma chain; 37.8 2.3E+02 0.0078 27.2 10.7 25 274-298 109-133 (409)
369 2no2_A HIP-I, huntingtin-inter 37.8 1.4E+02 0.0049 23.2 10.2 21 268-288 49-69 (107)
370 1u00_A HSC66, chaperone protei 37.8 2E+02 0.0067 24.8 9.6 10 123-132 86-95 (227)
371 2w6a_A ARF GTPase-activating p 37.7 1.1E+02 0.0037 21.7 7.1 36 226-265 10-47 (63)
372 2z73_A Rhodopsin; visual pigme 37.5 7 0.00024 36.3 0.0 15 96-110 303-317 (448)
373 3htk_A Structural maintenance 37.5 94 0.0032 21.0 7.7 7 283-289 46-52 (60)
374 2f23_A Anti-cleavage anti-GREA 37.2 78 0.0027 26.0 6.5 19 241-259 13-31 (156)
375 1gs9_A Apolipoprotein E, APOE4 36.8 1.8E+02 0.0062 24.2 9.5 60 235-294 96-160 (165)
376 2qag_B Septin-6, protein NEDD5 36.8 7.3 0.00025 37.8 0.0 38 127-164 175-214 (427)
377 3zx6_A HAMP, methyl-accepting 36.4 2.5E+02 0.0085 25.6 11.0 31 231-261 38-68 (341)
378 2v4h_A NF-kappa-B essential mo 36.3 1.2E+02 0.004 24.1 6.9 25 272-296 85-109 (110)
379 4dci_A Uncharacterized protein 36.3 1.8E+02 0.0063 24.1 11.7 68 229-296 24-103 (150)
380 2zqm_A Prefoldin beta subunit 36.3 1.4E+02 0.0047 22.6 11.0 35 262-296 76-110 (117)
381 1grj_A GREA protein; transcrip 36.0 1.6E+02 0.0055 24.1 8.3 22 240-261 11-33 (158)
382 1zhc_A Hypothetical protein HP 35.9 45 0.0016 24.4 4.3 21 278-298 45-65 (76)
383 4efa_E V-type proton ATPase su 35.8 2.1E+02 0.0072 24.6 10.4 24 266-289 87-110 (233)
384 1kd8_A GABH AIV, GCN4 acid bas 35.4 83 0.0028 20.0 4.8 10 274-283 19-28 (36)
385 2p2u_A HOST-nuclease inhibitor 35.3 1.6E+02 0.0055 24.6 8.3 52 238-289 23-79 (171)
386 2fic_A Bridging integrator 1; 35.3 1.9E+02 0.0065 24.8 9.1 28 262-289 182-209 (251)
387 2e50_A Protein SET; histone ch 35.2 84 0.0029 27.6 6.7 35 254-288 28-62 (225)
388 1lrz_A FEMA, factor essential 35.1 1.1E+02 0.0037 28.9 8.0 23 274-296 278-300 (426)
389 2p32_A Heat shock 70 kDa prote 34.9 1.6E+02 0.0053 22.8 8.7 19 279-297 70-88 (120)
390 2j69_A Bacterial dynamin-like 34.8 1E+02 0.0035 31.3 8.2 31 266-296 362-392 (695)
391 3u06_A Protein claret segregat 34.6 1.4E+02 0.0047 28.6 8.6 36 236-271 8-43 (412)
392 2cly_A ATP synthase B chain, m 34.5 99 0.0034 27.2 7.0 10 287-296 192-201 (214)
393 3auy_A DNA double-strand break 34.3 1.2E+02 0.004 27.9 8.0 11 231-241 147-157 (371)
394 2wb7_A PT26-6P; extra chromoso 34.2 35 0.0012 34.0 4.4 85 40-140 23-109 (526)
395 4ioe_A Secreted protein ESXB; 34.1 1.3E+02 0.0043 21.5 9.8 65 232-296 17-86 (93)
396 3zqs_A E3 ubiquitin-protein li 33.9 60 0.002 28.0 5.4 52 92-163 42-93 (186)
397 3rkg_A Magnesium transporter M 33.8 2.3E+02 0.008 25.4 9.6 69 232-301 128-198 (261)
398 3kin_B Kinesin heavy chain; mo 33.7 65 0.0022 25.4 5.2 18 278-295 97-114 (117)
399 1txp_A HnRNP C, heterogeneous 33.7 57 0.0019 19.6 3.6 22 263-284 3-24 (28)
400 3hls_A Guanylate cyclase solub 33.6 1.3E+02 0.0044 21.4 7.7 28 268-295 26-53 (66)
401 3sja_C Golgi to ER traffic pro 33.6 1E+02 0.0034 22.2 5.6 13 266-278 35-47 (65)
402 1flk_A TNF receptor associated 33.1 81 0.0028 27.3 6.2 34 266-299 39-72 (228)
403 4dyl_A Tyrosine-protein kinase 32.7 2.1E+02 0.007 26.9 9.5 10 262-271 122-131 (406)
404 2p4w_A Transcriptional regulat 32.7 2.3E+02 0.0078 24.0 9.2 59 234-293 122-181 (202)
405 3k29_A Putative uncharacterize 32.5 2.3E+02 0.0079 24.0 9.7 18 279-296 80-97 (169)
406 1go4_E MAD1 (mitotic arrest de 32.4 58 0.002 25.4 4.5 30 266-295 15-44 (100)
407 1ge9_A Ribosome recycling fact 32.3 2.4E+02 0.0081 24.1 9.7 49 237-288 120-172 (184)
408 2pms_C Pneumococcal surface pr 32.3 51 0.0017 26.7 4.3 7 285-291 108-114 (125)
409 1zme_C Proline utilization tra 32.3 46 0.0016 22.9 3.7 14 282-295 49-62 (70)
410 4gfq_A Ribosome-recycling fact 32.0 2.6E+02 0.0088 24.4 10.4 55 235-289 140-198 (209)
411 4ani_A Protein GRPE; chaperone 32.0 1.2E+02 0.0041 26.6 7.1 19 247-265 68-86 (213)
412 1bf5_A Signal transducer and a 32.0 1.3E+02 0.0044 30.4 8.1 37 264-300 53-89 (575)
413 1nkp_B MAX protein, MYC proto- 31.9 1.5E+02 0.005 21.5 6.7 29 274-302 51-79 (83)
414 2qag_B Septin-6, protein NEDD5 31.8 9.8 0.00033 36.9 0.0 10 229-238 296-305 (427)
415 3vjf_A WA20; protein design, d 31.8 1.6E+02 0.0055 22.0 8.6 39 256-294 35-76 (102)
416 3aei_A Prefoldin beta subunit 31.8 69 0.0024 24.1 4.7 35 227-266 62-96 (99)
417 1dh3_A Transcription factor CR 31.7 90 0.0031 21.3 5.0 25 274-298 26-50 (55)
418 4ehp_B Catenin alpha-1; adhere 31.6 17 0.00058 29.0 1.4 54 231-292 57-110 (111)
419 1g6u_A Domain swapped dimer; d 31.6 1.1E+02 0.0037 20.0 5.6 22 275-296 25-46 (48)
420 3axj_A GM27569P, translin; tra 31.6 1.8E+02 0.0062 25.8 8.4 36 232-267 16-51 (249)
421 2wam_A RV2714, conserved hypot 31.5 63 0.0022 30.5 5.5 15 144-158 158-172 (351)
422 1dip_A Delta-sleep-inducing pe 31.4 63 0.0022 23.9 4.3 27 273-299 18-44 (78)
423 3vem_A Helicase protein MOM1; 31.0 2E+02 0.0069 22.9 10.5 28 242-269 36-63 (115)
424 4fm3_A Uncharacterized hypothe 30.8 1.8E+02 0.0063 22.4 8.4 16 273-288 81-96 (98)
425 4b9q_A Chaperone protein DNAK; 30.5 2.1E+02 0.0073 28.3 9.6 16 281-296 583-598 (605)
426 3zbh_A ESXA; unknown function, 30.3 1.5E+02 0.0051 21.2 10.8 26 232-257 17-42 (99)
427 3jsv_C NF-kappa-B essential mo 30.0 1.4E+02 0.0049 22.9 6.3 49 253-302 3-51 (94)
428 3gpv_A Transcriptional regulat 29.8 80 0.0027 25.6 5.3 40 256-295 95-134 (148)
429 3b8o_A Lipopolysaccharide bios 29.8 2E+02 0.0068 25.5 8.4 18 230-247 120-137 (265)
430 2lf0_A Uncharacterized protein 29.6 1.7E+02 0.0057 23.5 6.9 21 278-298 37-57 (123)
431 1ud0_A HSC70, 70 kDa heat-shoc 29.6 1.3E+02 0.0043 22.8 6.2 19 279-297 56-74 (113)
432 1eh1_A Ribosome recycling fact 29.6 2.6E+02 0.009 23.8 9.1 51 236-286 118-172 (185)
433 3fav_B ESAT-6, 6 kDa early sec 29.6 1.6E+02 0.0053 21.1 9.5 25 233-257 14-38 (94)
434 2dq3_A Seryl-tRNA synthetase; 29.4 70 0.0024 30.7 5.6 26 274-299 72-97 (425)
435 4b4t_K 26S protease regulatory 29.2 79 0.0027 30.4 6.0 32 254-285 54-85 (428)
436 3a5t_A Transcription factor MA 29.2 6.6 0.00023 31.2 -1.4 30 267-296 62-91 (107)
437 1yvl_A Signal transducer and a 29.0 2.1E+02 0.0073 29.4 9.3 36 265-300 189-224 (683)
438 3ghg_B Fibrinogen beta chain; 28.9 2.8E+02 0.0096 27.1 9.7 22 277-298 163-184 (461)
439 1gs9_A Apolipoprotein E, APOE4 28.6 85 0.0029 26.2 5.4 28 226-253 46-74 (165)
440 2ayu_A Nucleosome assembly pro 28.5 1.1E+02 0.0038 29.5 6.8 56 236-291 74-129 (417)
441 3he4_B Synzip5; heterodimeric 28.5 1.2E+02 0.0042 19.6 6.3 30 265-294 12-41 (46)
442 1is1_A Ribosome recycling fact 28.4 2.8E+02 0.0094 23.6 10.4 53 236-288 117-173 (185)
443 2yko_A LINE-1 ORF1P; RNA-bindi 28.3 1.3E+02 0.0044 26.9 6.7 8 275-282 39-46 (233)
444 3a7o_A Autophagy protein 16; c 28.3 1.8E+02 0.006 21.3 9.1 42 256-297 32-73 (75)
445 3gaa_A Uncharacterized protein 28.3 93 0.0032 27.5 5.9 25 266-290 217-241 (252)
446 3fs3_A Nucleosome assembly pro 28.2 1.1E+02 0.0038 29.0 6.6 37 253-289 50-86 (359)
447 3t98_A Nuclear pore complex pr 28.2 1.4E+02 0.0048 20.4 5.4 26 264-289 23-48 (51)
448 3uux_B Mitochondrial division 28.1 2.3E+02 0.0079 25.4 8.3 18 75-92 69-86 (242)
449 2y7c_A Type-1 restriction enzy 28.1 2.1E+02 0.0071 26.1 8.6 24 268-291 433-456 (464)
450 3he5_A Synzip1; heterodimeric 28.1 1.3E+02 0.0044 19.7 6.8 45 239-287 4-48 (49)
451 3p8q_A GP5, head protein; viru 28.0 12 0.00043 35.2 0.0 48 249-296 20-67 (385)
452 3ok8_A Brain-specific angiogen 28.0 3.1E+02 0.011 24.1 10.8 66 231-296 98-174 (222)
453 1dd5_A Ribosome recycling fact 27.9 2.8E+02 0.0097 23.6 10.4 52 236-287 117-172 (185)
454 3ibp_A Chromosome partition pr 27.7 1.9E+02 0.0065 26.7 7.9 52 248-299 237-297 (302)
455 2c5k_T Syntaxin TLG1, T-snare 27.7 46 0.0016 25.5 3.2 12 266-277 68-79 (95)
456 1uii_A Geminin; human, DNA rep 27.6 2E+02 0.0067 21.7 8.4 29 266-294 49-77 (83)
457 1ise_A Ribosome recycling fact 27.5 2.9E+02 0.0098 23.6 10.4 51 236-286 117-171 (185)
458 2xnx_M M protein, M1-BC1; cell 27.5 1.7E+02 0.0059 24.2 6.8 16 280-295 76-91 (146)
459 1hx1_B BAG-1, BAG-family molec 27.3 2.3E+02 0.008 22.5 10.3 75 228-303 5-105 (114)
460 1bg1_A Protein (transcription 27.2 1.3E+02 0.0044 30.5 7.2 33 267-299 69-101 (596)
461 3l4q_C Phosphatidylinositol 3- 27.2 2.8E+02 0.0097 23.4 8.4 30 267-296 107-136 (170)
462 2ve7_C Kinetochore protein NUF 27.1 44 0.0015 29.9 3.5 37 231-268 135-171 (250)
463 4e61_A Protein BIM1; EB1-like 27.0 2.3E+02 0.0078 22.2 9.2 20 241-260 14-33 (106)
464 2lw1_A ABC transporter ATP-bin 27.0 1.2E+02 0.0041 22.5 5.4 25 266-290 59-83 (89)
465 3swy_A Cyclic nucleotide-gated 26.7 1.5E+02 0.005 19.9 7.0 44 256-299 2-45 (46)
466 1r8e_A Multidrug-efflux transp 26.7 1.4E+02 0.0049 25.8 6.8 49 245-293 67-116 (278)
467 1x4t_A Hypothetical protein LO 26.5 2E+02 0.0068 22.0 6.6 52 227-296 25-78 (92)
468 2qyw_A Vesicle transport throu 26.5 2.1E+02 0.0073 21.7 7.3 61 236-296 13-75 (102)
469 2w6b_A RHO guanine nucleotide 26.4 1.6E+02 0.0056 20.4 6.1 36 235-270 14-49 (56)
470 4dk0_A Putative MACA; alpha-ha 26.2 2.3E+02 0.0079 25.4 8.4 64 236-299 68-144 (369)
471 2xz3_A Maltose ABC transporter 26.2 94 0.0032 29.3 5.9 65 237-301 338-403 (463)
472 1lwu_A Fibrinogen alpha-1 chai 26.1 1.6E+02 0.0053 23.6 6.1 50 234-283 18-74 (119)
473 2nps_A VAMP-4, vesicle-associa 26.1 88 0.003 22.5 4.4 40 259-298 8-47 (74)
474 3t97_B Nuclear pore complex pr 26.1 1.8E+02 0.0063 20.8 7.2 51 252-302 6-56 (65)
475 2zdi_C Prefoldin subunit alpha 26.0 1.6E+02 0.0055 23.7 6.5 47 253-299 95-141 (151)
476 2avr_X Adhesion A; antiparalle 25.9 2.5E+02 0.0087 22.4 12.0 72 227-298 23-103 (119)
477 3rrk_A V-type ATPase 116 kDa s 25.9 1.2E+02 0.004 27.7 6.3 65 233-297 62-136 (357)
478 3bbp_D GRIP and coiled-coil do 25.9 42 0.0014 24.6 2.5 49 240-288 17-68 (71)
479 1am9_A Srebp-1A, protein (ster 25.8 1.9E+02 0.0066 21.0 7.9 74 229-302 3-82 (82)
480 1vcs_A Vesicle transport throu 25.8 1.7E+02 0.0059 22.2 6.3 58 233-290 36-94 (102)
481 1joc_A EEA1, early endosomal a 25.7 1.6E+02 0.0056 23.2 6.3 43 254-296 2-44 (125)
482 1r8d_A Transcription activator 25.7 95 0.0033 23.5 4.8 34 271-304 76-109 (109)
483 4dk0_A Putative MACA; alpha-ha 25.6 3.6E+02 0.012 24.1 9.8 80 225-304 64-153 (369)
484 2p4w_A Transcriptional regulat 25.6 2.4E+02 0.0082 23.9 7.9 57 232-288 123-183 (202)
485 3vp9_A General transcriptional 25.5 2.2E+02 0.0075 21.8 6.7 53 242-294 34-92 (92)
486 1vf6_A PALS-1, PALS1-associate 25.5 1.2E+02 0.0042 22.8 5.0 50 238-287 7-58 (83)
487 4etp_B Spindle POLE BODY-assoc 25.5 2.1E+02 0.0071 26.9 7.8 56 245-300 3-61 (333)
488 3gwk_C SAG1039, putative uncha 25.5 1.9E+02 0.0065 20.8 10.8 66 234-299 11-84 (98)
489 4ani_A Protein GRPE; chaperone 25.4 2.3E+02 0.0079 24.7 7.8 46 246-291 60-105 (213)
490 3iyk_A VP5; icosahedral virus; 25.4 4.4E+02 0.015 26.1 10.4 74 228-301 108-181 (526)
491 3d5a_X RF1, peptide chain rele 25.2 2.1E+02 0.0072 27.0 7.9 68 229-297 27-96 (354)
492 3ni0_A Bone marrow stromal ant 25.2 2.4E+02 0.0081 21.8 10.7 63 228-290 19-87 (99)
493 3vmx_A Voltage-gated hydrogen 25.1 1.6E+02 0.0056 19.9 5.5 33 266-298 7-39 (48)
494 2vs0_A Virulence factor ESXA; 25.1 1.9E+02 0.0064 20.6 10.8 66 234-299 9-82 (97)
495 2p4v_A Transcription elongatio 25.0 1.5E+02 0.0051 24.4 6.2 45 237-281 8-71 (158)
496 3vp9_A General transcriptional 25.0 1.6E+02 0.0053 22.6 5.7 63 235-297 18-81 (92)
497 3ci9_A Heat shock factor-bindi 25.0 70 0.0024 21.6 3.3 34 261-294 15-48 (48)
498 2d4x_A Flagellar HOOK-associat 24.9 99 0.0034 26.8 5.4 58 241-298 185-242 (248)
499 4emc_A Monopolin complex subun 24.9 1.9E+02 0.0064 25.0 6.8 72 233-304 8-79 (190)
500 3n94_A Fusion protein of malto 24.8 1E+02 0.0035 28.9 5.8 49 248-296 343-391 (475)
No 1
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=100.00 E-value=3.9e-46 Score=318.11 Aligned_cols=139 Identities=33% Similarity=0.732 Sum_probs=131.5
Q ss_pred HHHHHHHHhcCCCCCCCCCCchhhHHHHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEE
Q 039489 15 IQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVII 94 (304)
Q Consensus 15 ~~~wL~~vl~~~~~~a~~Y~~~~k~~v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~I 94 (304)
..+||.++|+ +|.+... +.+|+.++|++||+|+|++++|+ |++++||||+|||||.|+|.+|||||+|
T Consensus 8 ~~~~l~~~l~-------~Y~~~d~--t~~dv~~vl~~yp~L~p~~~~y~---G~~~~LL~l~GtIpv~y~g~~y~iPi~I 75 (146)
T 3obq_A 8 SESQLKKMVS-------KYKYRDL--TVRETVNVITLYKDLKPVLDSYG---TGSRELMNLTGTIPVPYRGNTYNIPICL 75 (146)
T ss_dssp CHHHHHHHTT-------TCSSHHH--HHHHHHHHHHHCTTEEEEEEESS---STTCEEEEEEEEEEEECSSCEEEEEEEE
T ss_pred CHHHHHHHHh-------cCCCcch--hHHHHHHHHHhCCCCceEeeeee---CChheEEEEEEEeeeeecCccccceEEE
Confidence 4689999998 4876443 67999999999999999999998 9999999999999999999999999999
Q ss_pred eecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccccccCCCCCHHHHHHHHHHHhccCCCCCCCC
Q 039489 95 WLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLYSQR 166 (304)
Q Consensus 95 wlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~~W~~~~s~L~~Lv~~l~~~F~~~pPl~~~~ 166 (304)
|||++||++||+|||+||.+|.|+ .|+|||++|+||+|||++|++++|||++||++|+++|+++||||+||
T Consensus 76 wlp~~YP~~pP~vfv~pt~~m~I~-~~~~Vd~~G~i~lpyL~~W~~~~snL~~ll~~l~~~F~~epPv~sk~ 146 (146)
T 3obq_A 76 WLLDTYPYNPPICFVKPTSSMTIK-TGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFSRP 146 (146)
T ss_dssp ECCTTTTTSCCEEEECCCTTEEEC-CBTTBCTTCBBCCHHHHTCCTTTCCHHHHHHHHHHHHHHSCSEEECC
T ss_pred EeCccCCCCCCEEEEeCCCCCEEC-CCCCCCCCCCEecccccccCCCCCCHHHHHHHHHHHHhhCCCCccCC
Confidence 999999999999999999999995 59999999999999999999999999999999999999999999985
No 2
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=100.00 E-value=6.5e-44 Score=309.17 Aligned_cols=145 Identities=30% Similarity=0.530 Sum_probs=132.5
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCCCCCchhhHHHHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcc-
Q 039489 9 PPNPQQIQQFLSSVLSQRGPSALPYAEDTKWLIRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVT- 87 (304)
Q Consensus 9 ~~~~~~~~~wL~~vl~~~~~~a~~Y~~~~k~~v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~- 87 (304)
+++||+|++||++||++ .|.+. + .+++|+.++|++||+|+|++++|||+||++++||||+|||||.|+|.+
T Consensus 9 ~~~p~~v~~wl~~vl~p------~Y~~~-~-~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~ 80 (162)
T 3r3q_A 9 ISVPEAVVNWLFKVIQP------IYNDG-R-TTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSP 80 (162)
T ss_dssp -CCCHHHHHHHHHHHTT------TCTTH-H-HHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSC
T ss_pred cCCCHHHHHHHHHhcCc------cccCh-h-HHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCccc
Confidence 37999999999999997 47653 3 366999999999999999999999999999999999999999999998
Q ss_pred cceeEEEeecccCCCCCCeEEEec-CCCceec----CCCCcccCCCceeccccccccCCCCCHHHHHHHHHHHhccCCC
Q 039489 88 YNIPVIIWLMESYPRHPPCVYVNP-TRDMIIK----RPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPP 161 (304)
Q Consensus 88 ynIPi~Iwlp~~YP~~pPivyV~p-t~~m~I~----~~~~~Vd~~G~v~lpyL~~W~~~~s~L~~Lv~~l~~~F~~~pP 161 (304)
|||||+||||++||++||+|||+| |.+|.++ ..|+|||++|+||+|||++|++++|+|.+||++|+.+|++-.|
T Consensus 81 Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD~~G~I~lpyL~~W~p~~s~L~~ll~~l~~lf~ep~~ 159 (162)
T 3r3q_A 81 HSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHAWDPAAMNLIMVVQELMSLLHEPPQ 159 (162)
T ss_dssp CEEEEEEECCTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBCTTSBBCCGGGGSCCGGGCCHHHHHHHHHHTTSCCCC
T ss_pred ccccEEEEeCcccCCCCCEEEEECCCccccccccccCCCCCCCCCCcEeCcccccCCCCcCcHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999998 8888632 3499999999999999999998889999999999999997654
No 3
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=99.48 E-value=1.7e-13 Score=104.37 Aligned_cols=68 Identities=9% Similarity=0.246 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSD 301 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~ 301 (304)
|+++||+|||++++++.+.+.++|+++|.+|++||++|+.+|++||++|++|+++|+++|+.|..+..
T Consensus 3 SllSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~ 70 (78)
T 3iv1_A 3 SLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDE 70 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999977643
No 4
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=99.17 E-value=6.6e-11 Score=90.10 Aligned_cols=71 Identities=15% Similarity=0.231 Sum_probs=67.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 224 TEDQTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 224 ~~~a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
..+|+||++|+++.+.+++.++||++|++|.+++.+|..+++ ++|++++++|+++|+.|+++.+||++.++
T Consensus 4 llSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l~ 77 (78)
T 3iv1_A 4 LISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSALE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457999999999999999999999999999999999999999 99999999999999999999999998653
No 5
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=98.99 E-value=3.9e-09 Score=90.22 Aligned_cols=107 Identities=22% Similarity=0.404 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEeccc----ccccCcccceeEEEeecccCCCCCCeEEEecCCCce
Q 039489 41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVP----MPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMI 116 (304)
Q Consensus 41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIP----i~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~ 116 (304)
+.+++..+.+.-+ ...........|| ..+|+...|+|. -.|.|..|.+ .|++|++||+.||.|++. |.
T Consensus 9 L~kE~~~l~~~~~-~g~~~~p~~~~~~-~~nl~~w~~~I~Gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~--- 80 (157)
T 2gjd_A 9 LQEERKKWRKDHP-FGFYAKPVKKADG-SMDLQKWEAGIPGKEGTNWAGGVYPI--TVEYPNEYPSKPPKVKFP-AG--- 80 (157)
T ss_dssp HHHHHHHHHHCCC-TTCEEEEEECTTS-CEEEEEEEEEEECCTTSTTTTBEEEE--EEECCTTTTTSCCEEECC-TT---
T ss_pred HHHHHHHHHhCCC-CCEEEEeccccCC-CCcccEEEEEEECCCCCCcCCeEEEE--EEEcCCCCCCCCCeeecc-CC---
Confidence 4477777755422 2222222222344 247777777774 3688887775 999999999999999996 42
Q ss_pred ecCCCCcccCCCceecccccc---ccCCCCCHHHHHHHHHHHhcc
Q 039489 117 IKRPHPHVTPSGLVSIPYLQN---WIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 117 I~~~~~~Vd~~G~v~lpyL~~---W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
.-|++||.+|+||+.+|+. |++ ..+|..++..|..+|.+
T Consensus 81 --i~HPnv~~~G~iCl~iL~~~~~W~p-~~~i~~vl~~i~~ll~~ 122 (157)
T 2gjd_A 81 --FYHPNVYPSGTICLSILNEDQDWRP-AITLKQIVLGVQDLLDS 122 (157)
T ss_dssp --CCCTTBCTTSBBCCGGGCTTTTCCT-TCCHHHHHHHHHHHHTS
T ss_pred --CccCCCCCCCcEeeecccCCCCCCC-CCcHHHHHHHHHHHHhC
Confidence 3499999999999999996 996 78999999999999954
No 6
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=98.97 E-value=5.7e-09 Score=89.55 Aligned_cols=107 Identities=21% Similarity=0.445 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEeccc----ccccCcccceeEEEeecccCCCCCCeEEEecCCCce
Q 039489 41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVP----MPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMI 116 (304)
Q Consensus 41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIP----i~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~ 116 (304)
+.+|+..+.+.-+ ...........|| ..+|+...|+|. -.|.|..|.+ .|++|++||+.||.|++. |+
T Consensus 12 L~kE~~~l~~~~~-~g~~~~p~~~~~~-~~nl~~w~~~i~Gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~--- 83 (161)
T 2grr_A 12 LAQERKAWRKDHP-FGFVAVPTKNPDG-TMNLMNWECAIPGKKGTPWEGGLFKL--RMLFKDDYPSSPPKCKFE-PP--- 83 (161)
T ss_dssp HHHHHHHHHHSCC-TTCEEEEEECTTS-CEEEEEEEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEES-SC---
T ss_pred HHHHHHHHHhCCC-CCEEEEeccccCC-CCCccEEEEEEECCCCCCccCCEEEE--EEEcCcccCCCCCEEEEe-cC---
Confidence 4477777765432 1112222222233 257888888874 3688888876 999999999999999996 43
Q ss_pred ecCCCCcccCCCceecccccc---ccCCCCCHHHHHHHHHHHhcc
Q 039489 117 IKRPHPHVTPSGLVSIPYLQN---WIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 117 I~~~~~~Vd~~G~v~lpyL~~---W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
.-|++||.+|+||+.+|+. |++ ..+|..++..|..+|.+
T Consensus 84 --i~HPnv~~~G~iCl~iL~~~~~W~p-~~~i~~vl~~i~~ll~~ 125 (161)
T 2grr_A 84 --LFHPNVYPSGTVCLSILEEDKDWRP-AITIKQILLGIQELLNE 125 (161)
T ss_dssp --CCSTTBCTTSBBCCGGGCTTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred --cccCCCCCCCeEeehhcCCCCCcCC-CCcHHHHHHHHHHHHhC
Confidence 3499999999999999985 996 78999999999999874
No 7
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=98.88 E-value=2e-08 Score=85.27 Aligned_cols=102 Identities=19% Similarity=0.394 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEeccc----ccccCcccceeEEEeecccCCCCCCeEEEecCCCce
Q 039489 41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVP----MPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMI 116 (304)
Q Consensus 41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIP----i~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~ 116 (304)
+.+|+..+.+.-+. ... .. .++ .+|+...|+|. -.|.|..|.+ .|++|++||+.||.|++. |+
T Consensus 9 L~~E~~~l~~~~~~-~i~--~~--~~~--~~l~~w~~~i~Gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~--- 75 (152)
T 2aak_A 9 LMRDFKRLQQDPPA-GIS--GA--PQD--NNIMLWNAVIFGPDDTPWDGGTFKL--SLQFSEDYPNKPPTVRFV-SR--- 75 (152)
T ss_dssp HHHHHHHHHHSCCT-TEE--EE--EET--TEEEEEEEEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC---
T ss_pred HHHHHHHHHhCCCC-CEE--EE--eCC--CCccEEEEEEeCCCCCCccCCEEEE--EEECCCCCCCCCCEEEEe-cC---
Confidence 44777777654321 111 11 111 25666666663 4688888776 999999999999999996 43
Q ss_pred ecCCCCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489 117 IKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 117 I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
.-|++||.+|+||+.+|. +|++ ..+|..++..|..+|.+
T Consensus 76 --i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~ 115 (152)
T 2aak_A 76 --MFHPNIYADGSICLDILQNQWSP-IYDVAAILTSIQSLLCD 115 (152)
T ss_dssp --CCCTTBCTTSBBCCGGGTTSCCT-TCCHHHHHHHHHHHHTS
T ss_pred --cccCCCCCCCEEechhhcCCCCC-CCcHHHHHHHHHHHHhC
Confidence 349999999999999998 6997 78999999999999864
No 8
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=98.87 E-value=1.9e-08 Score=84.21 Aligned_cols=108 Identities=17% Similarity=0.353 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhCC-CCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecC
Q 039489 41 IRQHLLTLISTFP-SLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKR 119 (304)
Q Consensus 41 v~~dv~~vl~~yp-~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~ 119 (304)
+.+|+..+.+.-+ ++.... ...+|.-..--..|.|.---.|+|..|.+ .|.+|++||+.||.|.+. |+ |-+
T Consensus 27 L~kEl~~l~~~~~~gi~v~~--~~~~~nl~~W~~~I~GP~~TpYegG~f~l--~i~fp~~YP~~PP~v~F~-T~---i~~ 98 (136)
T 2a7l_A 27 LQKELLALQNDPPPGMTLNE--KSVQNSITQWIVDMEGAPGTLYEGEKFQL--LFKFSSRYPFDSPQVMFT-GE---NIP 98 (136)
T ss_dssp HHHHHHHHHHSCCTTCCCCT--TCCCCSCEEEEEEEECCTTSTTTTCEEEE--EEEECTTTTTSCCEEEEE-SS---CCC
T ss_pred HHHHHHHHHhCCCCCEEEEE--eeCccccceeEEEEECCCCCccccEEEEE--EEECCCCCCCCCCEEEEe-CC---CcC
Confidence 4488888765422 222110 01112111222334444345788888877 889999999999999886 43 213
Q ss_pred CCCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhc
Q 039489 120 PHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFS 157 (304)
Q Consensus 120 ~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~ 157 (304)
-|++||.+|+||+..|. +|++ ..+|..++..++..++
T Consensus 99 ~HPNV~~~G~ICL~iL~~~WsP-~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 99 VHPHVYSNGHICLSILTEDWSP-ALSVQSVCLSIISMLS 136 (136)
T ss_dssp CBTTBCTTCBBCCGGGTTTCCT-TSCHHHHHHHHHHHTC
T ss_pred CCccCCCCCeEEchhcCCCCCC-CCcHHHHHHHHHHHhC
Confidence 49999999999999995 8997 7789999999888763
No 9
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=98.86 E-value=2.1e-08 Score=84.89 Aligned_cols=102 Identities=23% Similarity=0.402 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCce
Q 039489 41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMI 116 (304)
Q Consensus 41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~ 116 (304)
+.+|+..+.+.-+ -.... . .++ .+|+...++| --.|.|..|.+ .|.+|++||+.||.|.+. |+
T Consensus 9 L~kEl~~l~~~~~-~~~~~--~--~~~--~~l~~w~~~i~Gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~--- 75 (150)
T 1z2u_A 9 IQKELQDLGRDPP-AQCSA--G--PVG--DDLFHWQATIMGPPESPYQGGVFFL--TIHFPTDYPFKPPKVAFT-TR--- 75 (150)
T ss_dssp HHHHHHHHHHSCC-SSEEE--E--EET--TEEEEEEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEES-SC---
T ss_pred HHHHHHHHHhCCC-CCEEE--E--ECC--CcceEEEEEEECCCCCCcCCCEEEE--EEECCCCCCCCCcEEEEe-cC---
Confidence 4477877755422 11111 1 122 2455555555 46799988887 899999999999999985 43
Q ss_pred ecCCCCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489 117 IKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 117 I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
.-|++||.+|+||+.+|. +|++ ..+|..++..|..+|.+
T Consensus 76 --i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~ 115 (150)
T 1z2u_A 76 --IYHPNINSNGSICLDILRSQWSP-ALTISKVLLSICSLLCD 115 (150)
T ss_dssp --CCBTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred --cccCcCCCCCeEeeccccCCCCC-CCCHHHHHHHHHHHhhC
Confidence 249999999999999998 8997 78999999999999874
No 10
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=98.83 E-value=2.8e-08 Score=85.71 Aligned_cols=77 Identities=22% Similarity=0.452 Sum_probs=65.8
Q ss_pred EEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-cccCCCCCHHHHHHH
Q 039489 73 LQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRE 151 (304)
Q Consensus 73 L~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~ 151 (304)
..|.|.---.|.|..|.+ .|.+|++||+.||.|.+. |+ .-|++||.+|+||+..|. +|++ ..+|..++..
T Consensus 53 ~~I~GP~~TpYegg~f~l--~i~fp~~YP~~PP~v~F~-T~-----i~HPnV~~~G~ICl~iL~~~W~P-~~ti~~vL~s 123 (165)
T 2c4o_A 53 ATIMGPNDSPYQGGVFFL--TIHFPTDYPFKPPKVAFT-TR-----IYHPNINSNGSICLDILRSQWSP-ALTISKVLLS 123 (165)
T ss_dssp EEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEEC-SC-----CCBTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHH
T ss_pred EEEECCCCCCccCceEEE--EEECCCcCCCCCCEEEEe-cC-----CcCCcCCCCCeEeehhhcCCCCC-cCcHHHHHHH
Confidence 455665557799998887 899999999999999986 43 249999999999999998 8997 7899999999
Q ss_pred HHHHhcc
Q 039489 152 LSACFSR 158 (304)
Q Consensus 152 l~~~F~~ 158 (304)
|..+|.+
T Consensus 124 i~~ll~~ 130 (165)
T 2c4o_A 124 ICSLLCD 130 (165)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 9999874
No 11
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=98.82 E-value=4.2e-08 Score=80.75 Aligned_cols=107 Identities=21% Similarity=0.358 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489 41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP 120 (304)
Q Consensus 41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~ 120 (304)
+.+|+..+.+.-+ -.... ...+|.-..--..+.|.---.|+|..|.+ .|.+|++||+.||.|.+. |. + .-
T Consensus 11 L~kEl~~l~~~~~-~~~~~--~~~~~~l~~w~~~i~GP~~tpYegg~f~~--~i~fp~~YP~~PP~v~f~-t~--i--~~ 80 (125)
T 2fo3_A 11 IQKELHNFLNNPP-INCTL--DVHPNNIRIWIVKYVGLENTIYANEVYKL--KIIFPDDYPLKPPIVYFL-QK--P--PK 80 (125)
T ss_dssp HHHHHHHHHHSCC-TTEEE--EECTTCTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEEC-SS--C--CC
T ss_pred HHHHHHHHHhCCC-CCEEE--EeCcchhhhhheEEeCCCCCCcCCCEEEE--EEEcCCCCCCCCCEEEEe-CC--C--CC
Confidence 4578888755422 11111 11222222223445665556799988877 889999999999999885 43 1 24
Q ss_pred CCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489 121 HPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 121 ~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
|++||.+|+||+..|. +|++ ..+|..++..++..|..
T Consensus 81 HPnv~~~G~iCl~iL~~~W~P-~~~i~~vl~si~~ll~~ 118 (125)
T 2fo3_A 81 HTHVYSNGDICLSLLGDDYNP-SLSISGLVLSIISMLSS 118 (125)
T ss_dssp BTTBCTTSBBCCGGGTTTCCT-TCCHHHHHHHHHHHHC-
T ss_pred CCcCCCCCEEEchhcCCCCCC-CCcHHHHHHHHHHHHhC
Confidence 9999999999999995 8997 78999999999998864
No 12
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=98.82 E-value=3.4e-08 Score=84.14 Aligned_cols=102 Identities=21% Similarity=0.355 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEeccc----ccccCcccceeEEEeecccCCCCCCeEEEecCCCce
Q 039489 41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVP----MPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMI 116 (304)
Q Consensus 41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIP----i~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~ 116 (304)
+.+|+..+.+. +.-... ...++ .+|+...|+|. -.|.|..|.+ .|.+|++||+.||.|.+. |+
T Consensus 10 L~kE~~~l~~~-~~~~i~----~~~~~--~~l~~w~~~I~Gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~--- 76 (155)
T 1jat_A 10 IIKETEKLVSD-PVPGIT----AEPHD--DNLRYFQVTIEGPEQSPYEDGIFEL--ELYLPDDYPMEAPKVRFL-TK--- 76 (155)
T ss_dssp HHHHHHHHHHS-CCTTEE----EEEET--TEEEEEEEEEECCTTSTTTTEEEEE--EEECCTTTTTSCCEEEEC-SC---
T ss_pred HHHHHHHHHhC-CCCCEE----EEECC--CchhEEEEEEECCCCCCccCcEEEE--EEEcCCCCCCCCCcceee-cc---
Confidence 45788887654 211111 11122 26777777773 4688888776 899999999999999885 43
Q ss_pred ecCCCCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489 117 IKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 117 I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
.-|++||.+|+||+.+|. +|++ ..+|..++..|..+|..
T Consensus 77 --i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~ 116 (155)
T 1jat_A 77 --IYHPNIDRLGRICLDVLKTNWSP-ALQIRTVLLSIQALLAS 116 (155)
T ss_dssp --CCBTTBCTTCCBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred --cccCCCCCCCEEEchhhccCCCC-CCCHHHHHHHHHHHHhC
Confidence 249999999999999997 8997 88999999999999875
No 13
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=98.81 E-value=4.8e-08 Score=83.25 Aligned_cols=106 Identities=24% Similarity=0.394 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489 41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP 120 (304)
Q Consensus 41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~ 120 (304)
+.+|+..+.+.-+ .. ...+-.+|.-..--..|.|.---.|.|..|.+ .|.+|++||+.||.|.+. |+ .-
T Consensus 14 L~kEl~~l~~~~~-~~--i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~-----i~ 82 (156)
T 2e2c_A 14 LQQELRTLLMSGD-PG--ITAFPDGDNLFKWVATLDGPKDTVYESLKYKL--TLEFPSDYPYKPPVVKFT-TP-----CW 82 (156)
T ss_dssp HHHHHHHHHHHCC-TT--EEEEESSSCTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEES-SC-----CC
T ss_pred HHHHHHHHHhCCC-CC--EEEEECCCCccEEEEEEECCCCCCcCCcEEEE--EEECCCCCCCCCCEEEEe-CC-----cc
Confidence 4477877765422 11 11122222211222334554345689988877 999999999999999996 43 24
Q ss_pred CCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489 121 HPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 121 ~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
|++||.+|+||+.+|. +|++ ..+|..++..|..+|.+
T Consensus 83 HPnv~~~G~iCl~iL~~~W~p-~~~i~~vL~si~~ll~~ 120 (156)
T 2e2c_A 83 HPNVDQSGNICLDILKENWTA-SYDVRTILLSLQSLLGE 120 (156)
T ss_dssp BTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHTTS
T ss_pred cCCCccCceEECccccccCCC-CCcHHHHHHHHHHHHhC
Confidence 9999999999999998 6987 78999999999998864
No 14
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=98.81 E-value=3.9e-08 Score=83.75 Aligned_cols=106 Identities=23% Similarity=0.359 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489 41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP 120 (304)
Q Consensus 41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~ 120 (304)
+.+|+..+.+. +.-.... .-.+|.-..--..|.|.---.|.|..|.+ .|.+|++||+.||.|.+. |+ .-
T Consensus 10 L~kEl~~l~~~-~~~~i~~--~~~~~~l~~w~~~i~GP~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~-----i~ 78 (154)
T 2c2v_B 10 IIKETQRLLAE-PVPGIKA--EPDESNARYFHVVIAGPQDSPFEGGTFKL--ELFLPEEYPMAAPKVRFM-TK-----IY 78 (154)
T ss_dssp HHHHHHHHHHS-CCTTEEE--EECSSCTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEEC-SC-----CC
T ss_pred HHHHHHHHHhC-CCCCEEE--EECCCchheEEEEEECCCCCCcCCCeEEE--EEEcCCCCCCCCCEEEee-cC-----cc
Confidence 45788887654 2222211 22223222222344454345789988887 899999999999999986 43 24
Q ss_pred CCcccCCCceecccc-ccccCCCCCHHHHHHHHHHHhcc
Q 039489 121 HPHVTPSGLVSIPYL-QNWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 121 ~~~Vd~~G~v~lpyL-~~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
|++||.+|+||+..| ++|++ ..+|..++..|..+|.+
T Consensus 79 HPnv~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~ 116 (154)
T 2c2v_B 79 HPNVDKLGRICLDILKDKWSP-ALQIRTVLLSIQALLSA 116 (154)
T ss_dssp CTTBCTTCBBCCHHHHTSCCT-TCCHHHHHHHHHHHTTS
T ss_pred cCcCccCCeEEchhccCCCCC-CCcHHHHHHHHHHHHhC
Confidence 999999999999999 58997 88999999999998864
No 15
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=98.77 E-value=7.3e-08 Score=80.52 Aligned_cols=107 Identities=21% Similarity=0.353 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489 41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP 120 (304)
Q Consensus 41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~ 120 (304)
+.+|+..+.+.-+ -.... ...+|.-..--..+.|.---.|.|..|.+ .|.+|++||+.||.|.+. |+ | .-
T Consensus 25 L~kEl~~l~~~~~-~~~~~--~~~~~nl~~W~~~I~GP~~tpYegg~f~~--~i~fp~~YP~~PP~v~f~-t~---i-~~ 94 (136)
T 2h2y_A 25 IQKELNNFLKNPP-INCTI--DVHPSNIRIWIVQYVGLENTIYANEVYKI--KIIFPDNYPLKPPIVYFL-QK---P-PK 94 (136)
T ss_dssp HHHHHHHHHHSCC-TTEEE--EECTTCTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEEC-SS---C-CC
T ss_pred HHHHHHHHHhCCC-CCeEE--EeccccccccEEEEECCCCCceeCCEEEE--EEEeCCCCCCCCCEEEEe-CC---C-CC
Confidence 4578887755422 11111 11222222222445665556799988887 899999999999999885 43 1 24
Q ss_pred CCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489 121 HPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 121 ~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
|++|+.+|+||+..|. +|++ ..+|..++..++..|..
T Consensus 95 HPnv~~~G~ICl~iL~~~WsP-~~ti~~vL~si~sll~~ 132 (136)
T 2h2y_A 95 HTHVYSNGDICLSVLGDDYNP-SLSISGLILSIISMLSS 132 (136)
T ss_dssp CTTBCTTCCBCCGGGTTTCCT-TCCHHHHHHHHHHHHSS
T ss_pred CCcCCCCCEEECccccCCCCC-CCcHHHHHHHHHHHHhC
Confidence 9999999999999997 8987 78999999999998864
No 16
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=98.77 E-value=4.9e-08 Score=83.46 Aligned_cols=77 Identities=19% Similarity=0.455 Sum_probs=64.7
Q ss_pred EEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-cccCCCCCHHHHHHH
Q 039489 73 LQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRE 151 (304)
Q Consensus 73 L~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~ 151 (304)
..|.|.---.|+|..|.+ .|.+|++||+.||.|.+. |+ .-|++||.+|+||+..|. +|.+ ..+|..++..
T Consensus 47 ~~i~Gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~-----i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vL~~ 117 (158)
T 1zdn_A 47 VTIEGPEGTPYAGGLFRM--KLLLGKDFPASPPKGYFL-TK-----IFHPNVGANGEICVNVLKRDWTA-ELGIRHVLLT 117 (158)
T ss_dssp EEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC-----CCCTTBCTTSBBCHHHHTTTCCT-TCCHHHHHHH
T ss_pred EEEECCCCCCccCcEEEE--EEEcCCCCCCCCCEEEec-cC-----cccCCCCCCCEEehhhcCCCCCC-CCcHHHHHHH
Confidence 345554445799988887 899999999999999996 43 249999999999999997 8997 7899999999
Q ss_pred HHHHhcc
Q 039489 152 LSACFSR 158 (304)
Q Consensus 152 l~~~F~~ 158 (304)
|..+|..
T Consensus 118 i~~ll~~ 124 (158)
T 1zdn_A 118 IKCLLIH 124 (158)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 9998864
No 17
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=98.76 E-value=7.2e-08 Score=83.46 Aligned_cols=79 Identities=22% Similarity=0.510 Sum_probs=66.1
Q ss_pred eEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-cccCCCCCH
Q 039489 71 NLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-NWIYPSSNL 145 (304)
Q Consensus 71 ~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L 145 (304)
+|+...|+| --.|.|..|.+ .|.||.+||+.||.|.+. |+ .-|++|+.+|+||+.+|. +|++ ..+|
T Consensus 32 nl~~W~~~I~GP~~tpYegG~f~l--~i~fp~~YP~~PP~v~F~-t~-----i~HPNI~~~G~ICl~iL~~~WsP-~~~i 102 (169)
T 1ayz_A 32 NVMVWNAMIIGPADTPYEDGTFRL--LLEFDEEYPNKPPHVKFL-SE-----MFHPNVYANGEICLDILQNRWTP-TYDV 102 (169)
T ss_dssp EEEEEEEEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC-----CCCTTBCTTSBBCCGGGTTTCCT-TCCH
T ss_pred ccccceEEEECCCCCCcCCCEEEE--EEECcccCCCCCCccccc-cC-----CccCCCCCCCeEeehhhccCCCC-cCcH
Confidence 566655555 35688988887 899999999999999996 43 249999999999999998 6997 7899
Q ss_pred HHHHHHHHHHhcc
Q 039489 146 VDLVRELSACFSR 158 (304)
Q Consensus 146 ~~Lv~~l~~~F~~ 158 (304)
..++..|+.+|..
T Consensus 103 ~~vL~si~~ll~~ 115 (169)
T 1ayz_A 103 ASILTSIQSLFND 115 (169)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998863
No 18
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=98.76 E-value=3.2e-08 Score=84.65 Aligned_cols=76 Identities=26% Similarity=0.522 Sum_probs=63.3
Q ss_pred EEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccC-CCceeccccc-cccCCCCCHHHHHHH
Q 039489 74 QADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTP-SGLVSIPYLQ-NWIYPSSNLVDLVRE 151 (304)
Q Consensus 74 ~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~-~G~v~lpyL~-~W~~~~s~L~~Lv~~ 151 (304)
.|.|.---.|.|..|.+ .|.+|++||+.||.|.+. |+ .-|++||. +|+||+.+|. +|++ ..+|..++..
T Consensus 46 ~i~Gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~-----i~HPni~~~~G~iCl~iL~~~W~p-~~~i~~vl~~ 116 (159)
T 2bep_A 46 EIAGPPDTPYEGGRYQL--EIKIPETYPFNPPKVRFI-TK-----IWHPNISSVTGAICLDILKDQWAA-AMTLRTVLLS 116 (159)
T ss_dssp EEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEES-SC-----CCBTTBCTTTCBBCCGGGTTTCCT-TCCHHHHHHH
T ss_pred EEECCCCCCccCCEEEE--EEeCCCcCCCCCCEEEee-CC-----CCccCCCCCCCEEeChhhhccCCC-CCcHHHHHHH
Confidence 44454445799988876 999999999999999996 43 24999994 9999999998 5997 8899999999
Q ss_pred HHHHhcc
Q 039489 152 LSACFSR 158 (304)
Q Consensus 152 l~~~F~~ 158 (304)
|..+|..
T Consensus 117 i~~ll~~ 123 (159)
T 2bep_A 117 LQALLAA 123 (159)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 9999874
No 19
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=98.76 E-value=6.8e-08 Score=81.74 Aligned_cols=79 Identities=25% Similarity=0.478 Sum_probs=66.0
Q ss_pred eEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-cccCCCCCH
Q 039489 71 NLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-NWIYPSSNL 145 (304)
Q Consensus 71 ~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L 145 (304)
+|+...++| --.|.|..|.+ .|.+|++||+.||.|.+. |+ .-|++||.+|+||+..|. +|++ ..+|
T Consensus 29 ~l~~w~~~i~Gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~-----i~HPnv~~~G~iCl~iL~~~W~p-~~~i 99 (149)
T 2r0j_A 29 NYRHFNILINGPDGTPYEGGTYKL--ELFLPEQYPMEPPKVRFL-TK-----IYHPNIDKLGRICLDILKDKWSP-ALQI 99 (149)
T ss_dssp EEEEEEEEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEEC-SC-----CCBTTBCTTCBBCCGGGTTTCCT-TSCH
T ss_pred cccEEEEEEECCCCCCcCCCEEEE--EEeCCcccCCCCCeeEec-cC-----CccCCCCCCCEEechhcCCCCCC-CCcH
Confidence 566555555 35688888877 899999999999999986 43 249999999999999998 8997 7899
Q ss_pred HHHHHHHHHHhcc
Q 039489 146 VDLVRELSACFSR 158 (304)
Q Consensus 146 ~~Lv~~l~~~F~~ 158 (304)
..++..|..+|.+
T Consensus 100 ~~vl~~i~~ll~~ 112 (149)
T 2r0j_A 100 RTVLLSIQALLSS 112 (149)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998864
No 20
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=98.75 E-value=8.7e-08 Score=82.71 Aligned_cols=106 Identities=20% Similarity=0.332 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489 41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP 120 (304)
Q Consensus 41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~ 120 (304)
+.+|+..+.+. +.-.... .-.+|.-..--..|.|.---.|.|..|.+ .|.+|++||+.||.|.+. |+ .-
T Consensus 26 L~kEl~~l~~~-~~~gi~~--~~~~~nl~~W~~~I~GP~~TpYegG~f~l--~i~fp~~YP~~PP~V~F~-T~-----i~ 94 (166)
T 2ayv_A 26 INKELNDLSKD-PPTNCSA--GPVGDDMFHWQATIMGPEDSPYSGGVFFL--NIHFPSDYPFKPPKVNFT-TK-----IY 94 (166)
T ss_dssp HHHHHHHHHHS-CCTTEEE--EECSSCTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEEC-SC-----CC
T ss_pred HHHHHHHHHhC-CCCCEEE--EEcCCCcceeeEEEECCCCCCcCCCEEEE--EEeCCCcCCCCCceeeec-cC-----Cc
Confidence 45788877554 2111211 11222222223445554446799988877 899999999999999885 43 24
Q ss_pred CCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489 121 HPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 121 ~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
|++||.+|+||+..|. +|++ ..+|..++..|..+|..
T Consensus 95 HPNI~~~G~ICL~iL~~~WsP-~~ti~~vL~sI~sll~~ 132 (166)
T 2ayv_A 95 HPNINSQGAICLDILKDQWSP-ALTISKVLLSISSLLTD 132 (166)
T ss_dssp BTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred CCcCCCCCeEEcccccccCCC-CCcHHHHHHHHHHHHhC
Confidence 9999999999999998 8997 78999999999999874
No 21
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=98.74 E-value=7.8e-08 Score=84.07 Aligned_cols=102 Identities=21% Similarity=0.362 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCce
Q 039489 41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMI 116 (304)
Q Consensus 41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~ 116 (304)
+.+|+..+...-+ ..+ +...++. +|+...|+| --.|.|..|.+ .|.||++||+.||.|.+. |+
T Consensus 35 L~kEl~~l~~~~~-~gi----~~~p~~~--nl~~W~~~I~GP~~TpYegG~f~l--~i~fp~~YP~~PP~V~F~-T~--- 101 (179)
T 1i7k_A 35 LQQELMTLMMSGD-KGI----SAFPESD--NLFKWVGTIHGAAGTVYEDLRYKL--SLEFPSGYPYNAPTVKFL-TP--- 101 (179)
T ss_dssp HHHHHHHHHHHCC-TTE----EEEEETT--EEEEEEEEEEBCTTSTTBTCEEEE--EEECCTTTTTSCCEEEES-SC---
T ss_pred HHHHHHHHHhCCC-CCE----EEEEcCC--cccccEEEEECCCCCCcCCCEEEE--EEECCCcCCCCCceEEEe-cC---
Confidence 4478887766421 111 1222222 555555555 35688888877 899999999999999986 43
Q ss_pred ecCCCCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489 117 IKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 117 I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
.-|++||.+|+||+..|. +|.+ ..+|..++..|..+|.+
T Consensus 102 --i~HPNV~~~G~ICL~iL~~~WsP-~~ti~~vL~sI~sll~~ 141 (179)
T 1i7k_A 102 --CYHPNVDTQGNISLDILKEKWSA-LYDVRTILLSIQSLLGE 141 (179)
T ss_dssp --CCSTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred --CccCccccCCeEEcccCcCcCCC-CCCHHHHHHHHHHHHhC
Confidence 249999999999999998 6997 78999999999998864
No 22
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=98.73 E-value=1.2e-07 Score=80.47 Aligned_cols=106 Identities=19% Similarity=0.294 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489 41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP 120 (304)
Q Consensus 41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~ 120 (304)
+.+|+..+.+.-+ -.... .-.+|.-..--..|.|.---.|.|..|.+ .|.++++||+.||.|.+. |+ .-
T Consensus 9 L~kEl~~l~~~~~-~~i~~--~p~~~nl~~w~~~i~Gp~~tpyegg~f~~--~i~fp~~YP~~pP~v~f~-t~-----i~ 77 (151)
T 4gpr_A 9 IQKELREIQQDPP-CNCSA--GPVGDDIFHWTATITGPDDSPYQGGLFFL--DVHFPVDYPFKAPRVTFM-TK-----VY 77 (151)
T ss_dssp HHHHHHHHHHSCC-TTEEE--EESSSCTTEEEEEEECCSSSTTTTCEEEE--EEECCTTTTSSCCEEEES-SC-----CC
T ss_pred HHHHHHHHHhCCC-CCEEE--EEcCCCceEEEEEEeCCCCCCcCCCEEEE--EEECCCCCCCCcceeEEe-cC-----cc
Confidence 3477777755422 11111 11222222333445554446789988887 889999999999999885 43 23
Q ss_pred CCcccCCCceecccc-ccccCCCCCHHHHHHHHHHHhcc
Q 039489 121 HPHVTPSGLVSIPYL-QNWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 121 ~~~Vd~~G~v~lpyL-~~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
|++|+.+|+||+..| .+|++ ..+|..++..|..+|..
T Consensus 78 HPnv~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~ 115 (151)
T 4gpr_A 78 HPNINKNGVICLDILKDQWSP-ALTLSRVLLSISSLLTD 115 (151)
T ss_dssp BTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHC
T ss_pred cceECCCCEEEcccccCCCCC-CCcHHHHHHHHHHHhcC
Confidence 999999999999999 58997 78999999999999875
No 23
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=98.71 E-value=6.2e-08 Score=83.07 Aligned_cols=73 Identities=19% Similarity=0.304 Sum_probs=61.6
Q ss_pred ecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-cccCCCCCHHHHHHHHHHH
Q 039489 77 GTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSAC 155 (304)
Q Consensus 77 GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~ 155 (304)
|.---.|.|..|.+ .|.+|++||+.||.|.+. |+ .-|++||.+|+||+..|+ +|++ ..+|..++..|..+
T Consensus 42 gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~-----i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vL~~i~~l 112 (160)
T 1y8x_A 42 CPDEGFYKSGKFVF--SFKVGQGYPHDPPKVKCE-TM-----VYHPNIDLEGNVCLNILREDWKP-VLTINSIIYGLQYL 112 (160)
T ss_dssp CCSSSTTTTBCEEE--EEECCTTTTTSCCEEEEC-SC-----CCBTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCEEEE--EEeCCCcCCCCCCEEEEe-cC-----CccCcCCCCCeEEcccchhhccC-CCCHHHHHHHHHHH
Confidence 43334688888777 999999999999999986 43 249999999999999995 8997 78999999999998
Q ss_pred hcc
Q 039489 156 FSR 158 (304)
Q Consensus 156 F~~ 158 (304)
|.+
T Consensus 113 l~~ 115 (160)
T 1y8x_A 113 FLE 115 (160)
T ss_dssp HHS
T ss_pred HhC
Confidence 875
No 24
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=98.71 E-value=1.3e-07 Score=80.98 Aligned_cols=106 Identities=17% Similarity=0.195 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhCCCCccccceeecCC-CceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecC
Q 039489 41 IRQHLLTLISTFPSLDPKTATFTHND-GRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKR 119 (304)
Q Consensus 41 v~~dv~~vl~~yp~L~p~~~~ft~~d-G~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~ 119 (304)
+.+|+..+...-+ -.... .-.++ .-..--..|.|.---.|.|..|.+ .|.+|++||+.||.|.+. |+ .
T Consensus 8 L~kEl~~l~~~~~-~gi~~--~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~-----i 76 (164)
T 3h8k_A 8 LMAEYKQLTLNPP-EGIVA--GPMNEENFFEWEALIMGPEDTCFEFGVFPA--ILSFPLDYPLSPPKMRFT-CE-----M 76 (164)
T ss_dssp HHHHHHHHHHSCC-TTEEE--EESSTTCTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEEC-SC-----C
T ss_pred HHHHHHHHHhCCC-CCEEE--EECCCCCccEEEEEEeCCCCCCCCCCEEEE--EEECCCCCCCCCCEEEEc-CC-----C
Confidence 4477877765422 11111 11122 222233445554446799999886 889999999999999886 43 2
Q ss_pred CCCcccCCCceecccc--------------ccccCCCCCHHHHHHHHHHHhcc
Q 039489 120 PHPHVTPSGLVSIPYL--------------QNWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 120 ~~~~Vd~~G~v~lpyL--------------~~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
-|++|+.+|+||+..| .+|++ ..+|..++..|...|..
T Consensus 77 ~HPNV~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p-~~ti~~vL~~i~~ll~~ 128 (164)
T 3h8k_A 77 FHPNIYPDGRVCISILHAPGDDPMGYESSAERWSP-VQSVEKILLSVVSMLAE 128 (164)
T ss_dssp CCTTBCTTSBBCCGGGSCSCSCCCSCCTTCCCCCT-TCCHHHHHHHHHHHHHS
T ss_pred ccCCCCCCCcEeeecccCcccccccccccccCCCC-CCcHHHHHHHHHHHHcC
Confidence 3999999999999999 47987 78899999999998875
No 25
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=98.71 E-value=6.6e-08 Score=84.55 Aligned_cols=73 Identities=19% Similarity=0.309 Sum_probs=61.7
Q ss_pred ecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-cccCCCCCHHHHHHHHHHH
Q 039489 77 GTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSAC 155 (304)
Q Consensus 77 GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~ 155 (304)
|.---.|.|..|.+ .|.+|++||+.||.|.+. |+ .-|++||.+|+||+..|+ +|++ ..+|..++..|..+
T Consensus 62 gP~~tpYegg~f~~--~i~fp~~YP~~PP~v~F~-t~-----i~HPNV~~~G~iCl~iL~~~W~p-~~~i~~vL~si~~l 132 (180)
T 2nvu_C 62 CPDEGFYKSGKFVF--SFKVGQGYPHDPPKVKCE-TM-----VYHPNIDLEGNVALNILREDWKP-VLTINSIIYGLQYL 132 (180)
T ss_dssp CCCSGGGTTBCEEE--EEECCTTTTTSCCEEEEC-SC-----CCBTTBCTTSBBCCGGGTTSCCT-TCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCEEEE--EEeCCCcCCCCCCcCcee-cc-----CccCCCCCCCcEEcccccccCCC-CCCHHHHHHHHHHH
Confidence 43345688888777 899999999999999996 43 249999999999999995 7997 78999999999998
Q ss_pred hcc
Q 039489 156 FSR 158 (304)
Q Consensus 156 F~~ 158 (304)
|.+
T Consensus 133 l~~ 135 (180)
T 2nvu_C 133 FLE 135 (180)
T ss_dssp HHS
T ss_pred HhC
Confidence 874
No 26
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=98.70 E-value=1.3e-07 Score=83.56 Aligned_cols=76 Identities=20% Similarity=0.378 Sum_probs=63.1
Q ss_pred EEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-cccCCCCCHHHHHHHH
Q 039489 74 QADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVREL 152 (304)
Q Consensus 74 ~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l 152 (304)
.|.|.---.|.|..|.+ .|.||++||+.||.|.+. |. .-|++||.+|+||+.+|. +|.+ ..+|..+|..|
T Consensus 83 ~I~GP~~TpYegG~f~l--~i~fp~~YP~~PP~V~F~-T~-----i~HPNV~~~G~ICL~iL~~~WsP-~~ti~~vL~sI 153 (194)
T 3bzh_A 83 TILGPPGSVYEGGVFFL--DITFTPEYPFKPPKVTFR-TR-----IYHCNINSQGVICLDILKDNWSP-ALTISKVLLSI 153 (194)
T ss_dssp EEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC-----CCBTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHH
T ss_pred EEeCCCCCCccCCEEEE--EEECCCcCCCCCcccccc-CC-----CccceECCCCceechhhhccCCC-cCcHHHHHHHH
Confidence 34443334688988777 889999999999999986 43 249999999999999998 7997 78999999999
Q ss_pred HHHhcc
Q 039489 153 SACFSR 158 (304)
Q Consensus 153 ~~~F~~ 158 (304)
..+|..
T Consensus 154 ~~ll~~ 159 (194)
T 3bzh_A 154 CSLLTD 159 (194)
T ss_dssp HHHHHS
T ss_pred HHHHhC
Confidence 998864
No 27
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=98.70 E-value=1.8e-07 Score=80.53 Aligned_cols=107 Identities=20% Similarity=0.397 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEeccc----ccccCcccceeEEEeecccCCCCCCeEEEecCCCce
Q 039489 41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVP----MPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMI 116 (304)
Q Consensus 41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIP----i~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~ 116 (304)
+.+++..+.+.-+ -.........+||+ .+|+...|+|. ..|.|..|.+ .|.++++||+.||.|.+. |.
T Consensus 15 L~kEl~~l~~~~p-~gi~~~p~~~~d~~-~nl~~W~~~I~Gp~~Tpyegg~f~l--~i~fp~~YP~~pP~v~F~-t~--- 86 (163)
T 3rcz_B 15 LQEERKQWRRDHP-FGFYAKPCKSSDGG-LDLMNWKVGIPGKPKTSWEGGLYKL--TMAFPEEYPTRPPKCRFT-PP--- 86 (163)
T ss_dssp HHHHHHHHHHSCC-TTCEEEEEECTTSS-EEEEEEEEEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC---
T ss_pred HHHHHHHHHhCCC-CCEEEEEccCcCCC-CCccEEEEEEECCCCCCcCCCEEEE--EEECCCCCCCCCCEEEEe-CC---
Confidence 4478888766533 12222222333563 46777677663 4688988886 899999999999999986 43
Q ss_pred ecCCCCcccCCCceecccccc---ccCCCCCHHHHHHHHHHHhcc
Q 039489 117 IKRPHPHVTPSGLVSIPYLQN---WIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 117 I~~~~~~Vd~~G~v~lpyL~~---W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
.-|++||.+|+||+..|.. |++ ..+|..++..|..+|.+
T Consensus 87 --i~HPnV~~~G~iCl~iL~~~~~W~p-~~ti~~vL~~i~~ll~~ 128 (163)
T 3rcz_B 87 --LFHPNVYPSGTVCLSILNEEEGWKP-AITIKQILLGIQDLLDD 128 (163)
T ss_dssp --CCSTTBCTTSBBCCGGGCTTTTCCT-TCCHHHHHHHHHHHHTS
T ss_pred --CccCCCCCCCcEeccccCCCCCcCC-cCcHHHHHHHHHHHHhC
Confidence 3499999999999999974 997 78999999999998843
No 28
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=98.69 E-value=1.3e-07 Score=80.40 Aligned_cols=103 Identities=22% Similarity=0.425 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEeccc---ccccCcccceeEEEeecccCCCCCCeEEEecCCCcee
Q 039489 41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVP---MPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMII 117 (304)
Q Consensus 41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIP---i~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I 117 (304)
+.+|+..+.+.-+. ..... ..++ .+|+...|+|. -.|.|..|.+ .|.+|++||+.||.|.+. |+
T Consensus 9 L~kEl~~l~~~~~~---~i~~~-~~~~--~~l~~w~~~I~P~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~---- 75 (155)
T 1wzv_A 9 VVKELEDLQKKPPP---YLRNL-SSDD--ANVLVWHALLLPDQPPYHLKAFNL--RISFPPEYPFKPPMIKFT-TK---- 75 (155)
T ss_dssp HHHHHHHHHHSCCT---TEEEE-EECS--SCTTEEEEEECCCSTTGGGEEEEE--EEECCTTTTSSCCEEEES-SC----
T ss_pred HHHHHHHHHhCCCC---CEEEE-ecCC--CchheEEEEEcCCCCCCCCCEEEE--EEECCCCCCCCCCcceee-CC----
Confidence 45778777654331 11110 1232 25666777764 2366666555 999999999999999986 43
Q ss_pred cCCCCcccCCCceecccc--ccccCCCCCHHHHHHHHHHHhcc
Q 039489 118 KRPHPHVTPSGLVSIPYL--QNWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 118 ~~~~~~Vd~~G~v~lpyL--~~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
.-|++||.+|+||+..| ++|++ ..+|..++..|..+|.+
T Consensus 76 -i~HPnV~~~G~iCl~iL~~~~W~p-~~~i~~vl~~i~~ll~~ 116 (155)
T 1wzv_A 76 -IYHPNVDENGQICLPIISSENWKP-CTKTCQVLEALNVLVNR 116 (155)
T ss_dssp -CCBTTBCTTCBCCCGGGCTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred -CccCcCCCCCeEeecCCCccCCCC-CCcHHHHHHHHHHHHhC
Confidence 24999999999999999 58996 78999999999999874
No 29
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=98.69 E-value=1.1e-07 Score=80.46 Aligned_cols=76 Identities=22% Similarity=0.409 Sum_probs=63.0
Q ss_pred EEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccC-CCceeccccc-cccCCCCCHHHHHHH
Q 039489 74 QADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTP-SGLVSIPYLQ-NWIYPSSNLVDLVRE 151 (304)
Q Consensus 74 ~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~-~G~v~lpyL~-~W~~~~s~L~~Lv~~ 151 (304)
.|.|.---.|.|..|.+ .|.+|++||+.||.|.+. |. .-|++||. +|+||+.+|. +|++ ..+|..++..
T Consensus 37 ~I~Gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~-----i~HPni~~~~G~iCl~iL~~~W~p-~~~i~~vl~~ 107 (149)
T 1fxt_A 37 TFLGPPGTPYEGGKFVV--DIEVPMEYPFKPPKMQFD-TK-----VYHPNISSVTGAICLDILKNAWSP-VITLKSALIS 107 (149)
T ss_dssp EEECCSSSTTCSSEEEE--EEECCTTTTSSCCEEEES-SC-----CCBTTBCSSSCCBCCHHHHTSCCT-TCCHHHHHHH
T ss_pred EEECCCCCCcCCcEEEE--EEECCCCCCCCCCEEEEe-CC-----CccCCCcCCCCeEeCCcCCCCCCC-CCcHHHHHHH
Confidence 33443335688988876 999999999999999996 43 24999998 9999999997 6997 7899999999
Q ss_pred HHHHhcc
Q 039489 152 LSACFSR 158 (304)
Q Consensus 152 l~~~F~~ 158 (304)
|..+|..
T Consensus 108 i~~ll~~ 114 (149)
T 1fxt_A 108 LQALLQS 114 (149)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 9999875
No 30
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=98.67 E-value=4.8e-08 Score=83.03 Aligned_cols=79 Identities=27% Similarity=0.501 Sum_probs=65.6
Q ss_pred eEEEEEeccc---ccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc--cccCCCCCH
Q 039489 71 NLLQADGTVP---MPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ--NWIYPSSNL 145 (304)
Q Consensus 71 ~LL~L~GtIP---i~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~--~W~~~~s~L 145 (304)
+|+...|+|. -.|.|..|.+ .|.+|++||+.||.|.+. |+ .-|++|+.+|+||+..|+ +|++ ..+|
T Consensus 31 ~l~~w~~~i~P~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~-----i~HPnv~~~G~iCl~iL~~~~W~p-~~~i 101 (154)
T 1c4z_D 31 NLLTWQGLIVPDNPPYDKGAFRI--EINFPAEYPFKPPKITFK-TK-----IYHPNIDEKGQVCLPVISAENWKP-ATKT 101 (154)
T ss_dssp SSSEEEEEECCCSSSCCSCCEEE--EEECCTTTTTSCCEEEES-SC-----CCCTTBCTTCBBCCTTTSSSSCCT-TCCH
T ss_pred chheEEEEEeCCCCCccCCeEEE--EEEeCCCCCCCCCEEEEe-CC-----CccccCCCCCEEECCCCCCCCCCC-CCcH
Confidence 5666667663 3488888776 999999999999999996 43 249999999999999995 8997 7789
Q ss_pred HHHHHHHHHHhcc
Q 039489 146 VDLVRELSACFSR 158 (304)
Q Consensus 146 ~~Lv~~l~~~F~~ 158 (304)
..++..+..+|.+
T Consensus 102 ~~vl~~i~~ll~~ 114 (154)
T 1c4z_D 102 DQVIQSLIALVND 114 (154)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcC
Confidence 9999999998864
No 31
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=98.64 E-value=7.9e-08 Score=82.56 Aligned_cols=76 Identities=21% Similarity=0.428 Sum_probs=63.1
Q ss_pred EEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceecccc--------------cccc
Q 039489 74 QADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYL--------------QNWI 139 (304)
Q Consensus 74 ~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL--------------~~W~ 139 (304)
.|.|.---.|.|..|.+ .|.+|++||+.||.|.+. |. .-|++|+.+|+||+..| .+|+
T Consensus 40 ~i~GP~~tpYegg~f~~--~i~fp~~YP~~PP~v~f~-t~-----i~HPNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~ 111 (165)
T 2ucz_A 40 LIQGPPDTPYADGVFNA--KLEFPKDYPLSPPKLTFT-PS-----ILHPNIYPNGEVCISILHSPGDDPNMYELAEERWS 111 (165)
T ss_dssp EEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC-----CSCTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCC
T ss_pred EEECCCCCCccCcEEEE--EEECCccCCCCCCEEEEe-CC-----CccCCCCCCCcEeehhhCCccccccccCCCCCCCC
Confidence 44554445789988877 899999999999999986 43 24999999999999999 4798
Q ss_pred CCCCCHHHHHHHHHHHhcc
Q 039489 140 YPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 140 ~~~s~L~~Lv~~l~~~F~~ 158 (304)
+ ..+|..++..|+.+|.+
T Consensus 112 p-~~~i~~vL~si~~ll~~ 129 (165)
T 2ucz_A 112 P-VQSVEKILLSVMSMLSE 129 (165)
T ss_dssp T-TCCHHHHHHHHHHHHHS
T ss_pred C-cCcHHHHHHHHHHHHhC
Confidence 7 78999999999998864
No 32
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=98.64 E-value=2.8e-07 Score=79.61 Aligned_cols=76 Identities=22% Similarity=0.439 Sum_probs=63.3
Q ss_pred EEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-----cccCCCCCHHHH
Q 039489 74 QADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-----NWIYPSSNLVDL 148 (304)
Q Consensus 74 ~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-----~W~~~~s~L~~L 148 (304)
.|.|.---.|.|..|.+ .|.+|++||+.||.|.+. |+ .-|++||.+|+||+..|+ +|++ ..+|..+
T Consensus 39 ~I~GP~~tpYegg~f~~--~i~fp~~YP~~PP~v~f~-t~-----i~HPNv~~~G~iCl~iL~~~~~~~W~p-~~~i~~v 109 (169)
T 1yh2_A 39 QILGGANTPYEKGVFKL--EVIIPERYPFEPPQIRFL-TP-----IYHPNIDSAGRICLDVLKLPPKGAWRP-SLNIATV 109 (169)
T ss_dssp EEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEES-SC-----CCBTTBCTTCBBCCGGGSCTTTSCCCT-TSCHHHH
T ss_pred EEECCCCCCccCCEEEE--EEEeCCCCCCCCcEEEee-cC-----CccccCCcCCeEecccccCCcccCCCC-CCcHHHH
Confidence 34454345789988887 889999999999999986 43 249999999999999995 8997 7899999
Q ss_pred HHHHHHHhcc
Q 039489 149 VRELSACFSR 158 (304)
Q Consensus 149 v~~l~~~F~~ 158 (304)
+..|..+|..
T Consensus 110 L~si~~ll~~ 119 (169)
T 1yh2_A 110 LTSIQLLMSE 119 (169)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhC
Confidence 9999998865
No 33
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=98.63 E-value=1.5e-07 Score=84.71 Aligned_cols=102 Identities=19% Similarity=0.409 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCce
Q 039489 41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMI 116 (304)
Q Consensus 41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~ 116 (304)
+.+|+..+...-+ -.+. ....+| +|+...|+| --.|.|..|.+ .|.||++||+.||.|.+. |+ +
T Consensus 28 L~kEl~~l~~~~~-~gi~--~~p~~~----nl~~W~~~I~GP~~TpYegG~f~l--~i~fP~~YP~~PP~V~F~-T~--i 95 (216)
T 2pwq_A 28 LQKELKDIENENV-QEID--AHIKDS----NFFEWVGFIKGPEGTPYEGGHFTL--AITIPNDYPYNPPKIKFV-TK--I 95 (216)
T ss_dssp HHHHHHHHHHSCT-TTEE--EEECSS----CTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEES-SC--C
T ss_pred HHHHHHHHHhCCC-CCEE--EEEcCC----ccceeEEEEeCCCCCCccceEEEE--EEECCCcCCCCCCccccc-CC--C
Confidence 4578887755432 1111 122222 344445544 35799988877 899999999999999986 43 2
Q ss_pred ecCCCCccc-CCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489 117 IKRPHPHVT-PSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 117 I~~~~~~Vd-~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
-|++|| .+|.||+..|. +|++ ..+|..++..|..+|..
T Consensus 96 ---~HPNI~~~~G~ICL~iL~~~WsP-~~ti~~VL~sI~sLL~~ 135 (216)
T 2pwq_A 96 ---WHPNISSQTGAICLDVLKNEWSP-ALTIRTALLSIQALLSD 135 (216)
T ss_dssp ---CBTTBCTTTCBBCCHHHHHHCCT-TCCHHHHHHHHHHHHHS
T ss_pred ---cCCCCcCCCCEEEchhhcccCCC-CCcHHHHHHHHHHHHhC
Confidence 399999 58999999998 5997 78999999999999875
No 34
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=98.62 E-value=1.1e-07 Score=83.85 Aligned_cols=76 Identities=22% Similarity=0.315 Sum_probs=63.4
Q ss_pred EEEeccc---ccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-cccCCCCCHHHHH
Q 039489 74 QADGTVP---MPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLV 149 (304)
Q Consensus 74 ~L~GtIP---i~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv 149 (304)
...|+|. -.|.|..|.+ .|.+|++||+.||.|.+. |+ .-|++||.+|+||+..|. +|++ ..+|..++
T Consensus 65 ~w~~~I~p~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~-----i~HPnV~~~G~iCl~iL~~~W~p-~~~i~~vL 135 (190)
T 3o2u_A 65 KLEVIVRPDEGYYNYGSINF--NLDFNEVYPIEPPKVVCL-KK-----IFHPNIDLKGNVCLNILREDWSP-ALDLQSII 135 (190)
T ss_dssp EEEEEECCSSSTTTTCCEEE--EEECCTTTTTSCCEEEEC-SC-----CCCTTBCTTSBBCCGGGTTTCCT-TCCHHHHH
T ss_pred eEEEEEcCCCCCCCCCEEEE--EEECCCCCCCCCceeEEe-cC-----cccCCCCCCCeEechhccCCCCC-CCCHHHHH
Confidence 5555552 4688888876 889999999999999886 43 249999999999999995 8987 88999999
Q ss_pred HHHHHHhcc
Q 039489 150 RELSACFSR 158 (304)
Q Consensus 150 ~~l~~~F~~ 158 (304)
..|...|.+
T Consensus 136 ~~i~~ll~~ 144 (190)
T 3o2u_A 136 TGLLFLFLE 144 (190)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhC
Confidence 999998875
No 35
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=98.61 E-value=7.1e-08 Score=82.57 Aligned_cols=76 Identities=22% Similarity=0.382 Sum_probs=63.8
Q ss_pred EEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCce---eccccccccCCCCCHHHHHH
Q 039489 74 QADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLV---SIPYLQNWIYPSSNLVDLVR 150 (304)
Q Consensus 74 ~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v---~lpyL~~W~~~~s~L~~Lv~ 150 (304)
.|.|.---.|+|..|.+ .|.+|++||+.||.|.+. |+ .-|++||.+|+| |+..|.+|++ ..+|..++.
T Consensus 60 ~I~GP~~TpYegG~f~l--~i~fp~~YP~~PP~v~F~-t~-----i~HPNV~~~G~icisCL~iL~~WsP-~~ti~~vL~ 130 (156)
T 2q0v_A 60 TIFGQPGTVFENRIYSL--TIFCDDNYPDSPPTVKFD-TK-----IEMSCVDNCGRVIKNNLHILKNWNR-NYTIETILI 130 (156)
T ss_dssp EEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-BC-----CCCTTBCTTSBBCGGGSHHHHTCCT-TCCHHHHHH
T ss_pred EEECCCCCCcCCcEEEE--EEECCCcCCCCCCeEEEE-cc-----cccCCCccCCeEehhhcccccCCCC-cCcHHHHHH
Confidence 44443345699988876 899999999999999886 43 249999999999 8999999997 789999999
Q ss_pred HHHHHhcc
Q 039489 151 ELSACFSR 158 (304)
Q Consensus 151 ~l~~~F~~ 158 (304)
.|+.+|..
T Consensus 131 sI~~ll~~ 138 (156)
T 2q0v_A 131 SLRQEMLS 138 (156)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHhC
Confidence 99998875
No 36
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=98.60 E-value=3e-07 Score=79.59 Aligned_cols=105 Identities=19% Similarity=0.314 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhCC-CCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecC
Q 039489 41 IRQHLLTLISTFP-SLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKR 119 (304)
Q Consensus 41 v~~dv~~vl~~yp-~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~ 119 (304)
+.+|+..+.+.-+ ++. ....+|.-..--..|.|.---.|+|..|.+ .|.+|++||+.||.|.+. |+ .
T Consensus 28 L~kEl~~l~~~~~~gi~----~~p~~~nl~~W~~~I~GP~~TpYegG~f~l--~i~fp~~YP~~PP~V~F~-T~-----i 95 (169)
T 1yrv_A 28 LHRDFCDLKENNYKGIT----AKPVSEDMMEWEVEIEGLQNSVWQGLVFQL--TIHFTSEYNYAPPVVKFI-TI-----P 95 (169)
T ss_dssp HHHHHHHHHHHCCTTEE----EEECSTTSCEEEEEEECCTTSTTTTCEEEE--EEECCTTBTTBCCEEEES-SC-----C
T ss_pred HHHHHHHHHhCCCCCEE----EEEcCCccccceeEEECCCCCCccceEEEE--EEECCccCCCCCCcceec-CC-----C
Confidence 4577777765422 222 222223222223344444345788988876 899999999999999986 43 2
Q ss_pred CCCcc-cCCCceeccccc---cccCCCCCHHHHHHHHHHHhcc
Q 039489 120 PHPHV-TPSGLVSIPYLQ---NWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 120 ~~~~V-d~~G~v~lpyL~---~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
-|++| +.+|+||+..|. +|++ ..+|..++..|..+|.+
T Consensus 96 ~HPNI~~~~G~ICL~iL~~~~~WsP-~~ti~~vL~sI~sll~~ 137 (169)
T 1yrv_A 96 FHPNVDPHTGQPCIDFLDNPEKWNT-NYTLSSILLALQVMLSN 137 (169)
T ss_dssp CCTTBCTTTCCBCCHHHHCGGGCCT-TCCHHHHHHHHHHHHTS
T ss_pred ccCcccCCCCeEeehhhcCCcCCCC-cCCHHHHHHHHHHHHhC
Confidence 49999 799999999996 8997 88999999999999864
No 37
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=98.59 E-value=4.1e-07 Score=78.82 Aligned_cols=78 Identities=21% Similarity=0.384 Sum_probs=64.3
Q ss_pred EEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCccc-CCCceeccccc--cccCCCCCHHHHH
Q 039489 73 LQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVT-PSGLVSIPYLQ--NWIYPSSNLVDLV 149 (304)
Q Consensus 73 L~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd-~~G~v~lpyL~--~W~~~~s~L~~Lv 149 (304)
..|.|.---.|.|..|.+ .|.+|++||+.||.|.+..+. .-|++|| .+|+||+..|+ +|++ ..+|..++
T Consensus 52 ~~I~Gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~t~~-----i~HPni~~~~G~iCl~iL~~~~W~p-~~~i~~vL 123 (172)
T 2y9m_A 52 AIISGPSDTPYENHQFRI--LIEVPSSYPMNPPKISFMQNN-----ILHCNVKSATGEICLNILKPEEWTP-VWDLLHCV 123 (172)
T ss_dssp EEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEECTTS-----CCCTTEETTTTEECCGGGSTTTCCT-TCCHHHHH
T ss_pred EEEECCCCCcccCCEEEE--EEECCCcCCCCCCEEEEeeCC-----eecCCCcCCCCEEeccccCCCCCCC-cCcHHHHH
Confidence 344554446789988877 899999999999999996322 2499997 79999999996 8997 78999999
Q ss_pred HHHHHHhcc
Q 039489 150 RELSACFSR 158 (304)
Q Consensus 150 ~~l~~~F~~ 158 (304)
..|..+|.+
T Consensus 124 ~si~~ll~~ 132 (172)
T 2y9m_A 124 HAVWRLLRE 132 (172)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhC
Confidence 999998875
No 38
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=98.59 E-value=2.9e-07 Score=81.37 Aligned_cols=79 Identities=20% Similarity=0.470 Sum_probs=65.8
Q ss_pred eEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCccc-CCCceeccccc-cccCCCCC
Q 039489 71 NLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVT-PSGLVSIPYLQ-NWIYPSSN 144 (304)
Q Consensus 71 ~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd-~~G~v~lpyL~-~W~~~~s~ 144 (304)
+|+...|+| --.|.|..|.+ .|.+|++||+.||.|.+. |+ + -|++|+ .+|+||+..|. +|++ ..+
T Consensus 73 nl~~W~~~I~GP~~TpYegG~f~l--~i~fp~~YP~~PP~V~F~-T~--i---~HPNI~~~~G~ICL~iL~~~WsP-~~t 143 (193)
T 2f4z_A 73 DIHRWRGFIAGPLGTPYEGGHFTL--DIVIPPDYPYNPPKMKFV-TK--I---WHPNISSQTGAICLDILKHEWSP-ALT 143 (193)
T ss_dssp EEEEEEEEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC--C---CBTTBCTTTCBBCCGGGTTTCCT-TSC
T ss_pred CcceEEEEEeCCCCCCcCCCEEEE--EEECCCcCCCCCCeEEEe-cC--C---ccCCCcCCCCEEECccccccCCC-CCC
Confidence 566666666 24688888776 899999999999999986 43 2 399999 59999999998 5997 789
Q ss_pred HHHHHHHHHHHhcc
Q 039489 145 LVDLVRELSACFSR 158 (304)
Q Consensus 145 L~~Lv~~l~~~F~~ 158 (304)
|..++..|..+|..
T Consensus 144 i~~vL~sI~sll~~ 157 (193)
T 2f4z_A 144 IRTALLSIQAMLAD 157 (193)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998874
No 39
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=98.58 E-value=3.7e-07 Score=78.65 Aligned_cols=80 Identities=24% Similarity=0.394 Sum_probs=62.0
Q ss_pred eeEEEEEeccccccc--CcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-cccCCCCCHH
Q 039489 70 VNLLQADGTVPMPFQ--GVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLV 146 (304)
Q Consensus 70 ~~LL~L~GtIPi~y~--g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~ 146 (304)
.--+.|.|.--..|. |..|.+ .|.++++||+.||.|.+. |+ + -|++|+.+|+||+..|. +|++ ..++.
T Consensus 51 ~w~~~i~Gp~~tpye~~gg~f~~--~i~fp~~YP~~pP~v~f~-t~--i---~HPnv~~~G~iCl~il~~~W~p-~~~i~ 121 (167)
T 4ds2_A 51 NWILKVKAPADSVYGGAGNTYQL--SVLFSDDYPHEPPTVRFV-TP--V---YSPLVTGEGGICDRMVNDFWTP-DQHAS 121 (167)
T ss_dssp EEEEEEECCTTSGGGTTCCEEEE--EEECCTTTTTSCCEEEES-SC--C---CCSSCCTTSCCCTHHHHTTCCT-TSCHH
T ss_pred EEEEEEECCCCCCccCCCCEEEE--EEECCCCCCCCCCEEEEe-CC--c---ccccCCCCCEEEcccCcCCCCC-CCChH
Confidence 334455664455788 777776 889999999999999986 43 2 39999999999999995 8987 77887
Q ss_pred HH-HHHHHHHhcc
Q 039489 147 DL-VRELSACFSR 158 (304)
Q Consensus 147 ~L-v~~l~~~F~~ 158 (304)
.+ +..|..+|..
T Consensus 122 ~vll~~l~~l~~~ 134 (167)
T 4ds2_A 122 DVIKLVLDRVFSQ 134 (167)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhc
Confidence 74 4567777775
No 40
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=98.58 E-value=3.2e-07 Score=78.91 Aligned_cols=73 Identities=25% Similarity=0.396 Sum_probs=61.1
Q ss_pred ecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccc-------cccCCCCCHHHHH
Q 039489 77 GTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQ-------NWIYPSSNLVDLV 149 (304)
Q Consensus 77 GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~-------~W~~~~s~L~~Lv 149 (304)
|----.|.|..|.+ .|.||++||+.||.|.+. |+ .-|++|+.+|+||+..|. +|++ ..+|..++
T Consensus 52 gp~~tpyegg~f~~--~i~fp~~YP~~pP~v~f~-t~-----i~HPnv~~~G~iCl~iL~~~~~~~~~W~p-~~~i~~vl 122 (167)
T 3fn1_B 52 TPDEGYYQGGKFQF--ETEVPDAYNMVPPKVKCL-TK-----IWHPNITETGEICLSLLREHSIDGTGWAP-TRTLKDVV 122 (167)
T ss_dssp CCSSSTTTTCCEEE--EEECCTTBTTBCCEEEEC-SC-----CCCSSBCTTCCBCCGGGSBCSSSTTSBCT-TCCHHHHH
T ss_pred CCCCCccCCCEEEE--EEECCCCCCCCCCeeEec-CC-----cccCCCCCCCEEechhhccCCCCCCCCCC-cCcHHHHH
Confidence 43334688988886 889999999999999885 43 249999999999999998 4886 78999999
Q ss_pred HHHHHHhcc
Q 039489 150 RELSACFSR 158 (304)
Q Consensus 150 ~~l~~~F~~ 158 (304)
..|...|.+
T Consensus 123 ~~i~~ll~~ 131 (167)
T 3fn1_B 123 WGLNSLFTD 131 (167)
T ss_dssp HHHHHTTTT
T ss_pred HHHHHHHcC
Confidence 999997765
No 41
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=98.57 E-value=1.7e-07 Score=81.27 Aligned_cols=106 Identities=18% Similarity=0.250 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhCCCCccccceeecC-CCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecC
Q 039489 41 IRQHLLTLISTFPSLDPKTATFTHN-DGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKR 119 (304)
Q Consensus 41 v~~dv~~vl~~yp~L~p~~~~ft~~-dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~ 119 (304)
+.+++..+.+. +.-.... ...+ |--..--..|.|.---.|.|..|.+ .|.+|++||+.||.|.+. |+ .
T Consensus 22 L~kEl~~l~~~-~~~gi~~--~p~~~~nl~~W~~~I~GP~~TpYegG~f~~--~i~fp~~YP~~PP~v~F~-T~-----i 90 (172)
T 2awf_A 22 LRRQLAELNKN-PVEGFSA--GLIDDNDLYRWEVLIIGPPDTLYEGGVFKA--HLTFPKDYPLRPPKMKFI-TE-----I 90 (172)
T ss_dssp HHHHHHHHHHS-CCTTEEE--EESSTTCTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEEC-SC-----C
T ss_pred HHHHHHHHHhC-CCCCEEE--EECCCccccccEEEEeCCCCCCcCCcEEEE--EEECCcccCCCCCccccc-CC-----C
Confidence 45778877554 2111111 1112 1212222345554446799988887 899999999999999986 43 2
Q ss_pred CCCcccCCCceeccccc--------------cccCCCCCHHHHHHHHHHHhcc
Q 039489 120 PHPHVTPSGLVSIPYLQ--------------NWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 120 ~~~~Vd~~G~v~lpyL~--------------~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
-|++|+.+|+||+..|. +|++ ..+|..++..|+.+|.+
T Consensus 91 ~HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP-~~ti~~vL~sI~sll~~ 142 (172)
T 2awf_A 91 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLP-IHTVETIMISVISMLAD 142 (172)
T ss_dssp CCTTBCTTCBBCCGGGSCC---------CTTSCCT-TCCHHHHHHHHHHHHSC
T ss_pred ccCCCCCCCcEehhhcCCcccccccccccCCCCCC-cCcHHHHHHHHHHHHHC
Confidence 49999999999999995 6887 78999999999998864
No 42
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=98.55 E-value=2e-07 Score=81.61 Aligned_cols=106 Identities=16% Similarity=0.226 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhCC-CCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecC
Q 039489 41 IRQHLLTLISTFP-SLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKR 119 (304)
Q Consensus 41 v~~dv~~vl~~yp-~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~ 119 (304)
+.+++..+...-+ ++... ....|.-..--+.|.|.---.|.|..|.+ .|.||++||+.||.|.+. |+ +
T Consensus 12 L~kEl~~l~~~~~~gi~~~---~~~~~nl~~W~~~I~Gp~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~--i--- 80 (183)
T 3rz3_A 12 LLLELKGLQEEPVEGFRVT---LVDEGDLYNWEVAIFGPPNTYYEGGYFKA--RLKFPIDYPYSPPAFRFL-TK--M--- 80 (183)
T ss_dssp HHHHHHHHHHSCCTTEEEE---ECTTCCTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEES-SC--C---
T ss_pred HHHHHHHHHhCCCCCEEEE---ecCccchhheeeeeeCCCCCCCCCCeEEE--EEECCCCCCCCCCeeEec-CC--C---
Confidence 3477777755422 22211 01122222233445554446789988886 889999999999999886 43 2
Q ss_pred CCCcccCCCceecccc--------------ccccCCCCCHHHHHHHHHHHhcc
Q 039489 120 PHPHVTPSGLVSIPYL--------------QNWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 120 ~~~~Vd~~G~v~lpyL--------------~~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
-|++|+.+|+||+..| .+|++ ..+|..++..|+.+|.+
T Consensus 81 ~HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p-~~~i~~vL~si~~ll~~ 132 (183)
T 3rz3_A 81 WHPNIYETGDVCISILHPPVDDPQSGELPSERWNP-TQNVRTILLSVISLLNE 132 (183)
T ss_dssp CCTTBCTTSBBCCTTC--------------CCCCT-TCCHHHHHHHHHHHHHS
T ss_pred ccCCCCCCCcEehhhcCcccccccccccccCCCCC-cCcHHHHHHHHHHHHhC
Confidence 3999999999999999 47987 77899999999998853
No 43
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.55 E-value=2.5e-07 Score=81.92 Aligned_cols=76 Identities=26% Similarity=0.522 Sum_probs=62.9
Q ss_pred EEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccC-CCceeccccc-cccCCCCCHHHHHHH
Q 039489 74 QADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTP-SGLVSIPYLQ-NWIYPSSNLVDLVRE 151 (304)
Q Consensus 74 ~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~-~G~v~lpyL~-~W~~~~s~L~~Lv~~ 151 (304)
.|.|.---.|.|..|.+ .|.+|.+||+.||.|.+. |+ .-|++||. +|+||+.+|. +|++ ..+|..++..
T Consensus 43 ~i~Gp~~tpyegg~f~~--~i~fp~~YP~~pP~v~f~-t~-----i~HPnv~~~~G~iCl~iL~~~W~p-~~~i~~vL~~ 113 (201)
T 3k9o_A 43 EIAGPPDTPYEGGRYQL--EIKIPETYPFNPPKVRFI-TK-----IWHPNISSVTGAICLDILKDQWAA-AMTLRTVLLS 113 (201)
T ss_dssp EEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC-----CCBTTBCTTTCBBCCGGGTTTCCT-TCCHHHHHHH
T ss_pred EEECCCCCCCCCCEEEE--EEECCCcCCCCCCccccc-cC-----cccCCCcCCCCeeeCcccccCCCC-CCCHHHHHHH
Confidence 34444446789988876 889999999999999985 43 24999995 9999999995 8987 8899999999
Q ss_pred HHHHhcc
Q 039489 152 LSACFSR 158 (304)
Q Consensus 152 l~~~F~~ 158 (304)
|...|..
T Consensus 114 i~~ll~~ 120 (201)
T 3k9o_A 114 LQALLAA 120 (201)
T ss_dssp HHHHHHS
T ss_pred HHHHhcC
Confidence 9998875
No 44
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=98.54 E-value=1.4e-07 Score=78.78 Aligned_cols=77 Identities=22% Similarity=0.320 Sum_probs=64.1
Q ss_pred EEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCC-Cce--eccccccccCCCCCHHHHH
Q 039489 73 LQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPS-GLV--SIPYLQNWIYPSSNLVDLV 149 (304)
Q Consensus 73 L~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~-G~v--~lpyL~~W~~~~s~L~~Lv 149 (304)
..+.|.---.|+|..|.+ .|.++++||+.||.|.+. |+ .-|++||.+ |+| |+..|.+|++ ..+|..++
T Consensus 44 ~~i~GP~~tpyegg~f~~--~i~fp~~YP~~PP~v~f~-t~-----i~HPnv~~~~G~i~~cL~~l~~W~p-~~~i~~vl 114 (138)
T 1jat_B 44 GTILGPPHSNHENRIYSL--SIDCGPNYPDSPPKVTFI-SK-----INLPCVNPTTGEVQTDFHTLRDWKR-AYTMETLL 114 (138)
T ss_dssp EEEECCSSSTTTTCEEEE--EEECCTTTTTSCCEEEES-BC-----CCCTTBCTTTCBBCTTSHHHHTCCT-TCCHHHHH
T ss_pred EEEECCCCCCccceEEEE--EEECCCCCCCCCCceEEE-cc-----cccCCEeCCCCEEeeecccCCCCCC-cCcHHHHH
Confidence 345554455799988877 899999999999999885 43 249999997 999 8888899997 78999999
Q ss_pred HHHHHHhcc
Q 039489 150 RELSACFSR 158 (304)
Q Consensus 150 ~~l~~~F~~ 158 (304)
..+...|.+
T Consensus 115 ~~i~~ll~~ 123 (138)
T 1jat_B 115 LDLRKEMAT 123 (138)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHcC
Confidence 999998864
No 45
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=98.54 E-value=2.1e-07 Score=79.96 Aligned_cols=77 Identities=21% Similarity=0.273 Sum_probs=63.1
Q ss_pred EEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCccc-CCCceeccccc---cccCCCCCHHHH
Q 039489 73 LQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVT-PSGLVSIPYLQ---NWIYPSSNLVDL 148 (304)
Q Consensus 73 L~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd-~~G~v~lpyL~---~W~~~~s~L~~L 148 (304)
..|.|.---.|+|..|.+ .|.++++||+.||.|.+. |+ .-|++|| .+|+||+.+|+ +|++ ..+|..+
T Consensus 63 ~~I~GP~~TpYegG~f~l--~i~fp~~YP~~PP~v~F~-T~-----i~HPNV~~~~G~ICl~iL~~~~~WsP-~~ti~~v 133 (160)
T 2a4d_A 63 GMIIGPPRTIYENRIYSL--KIECGPKYPEAPPFVRFV-TK-----INMNGVNSSNGVVDPRAISVLAKWQN-SYSIKVV 133 (160)
T ss_dssp EEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-BC-----CCCTTBCTTTCBBCGGGSHHHHTCCT-TCCHHHH
T ss_pred EEEECCCCCCccCeEEEE--EEECCCcCCCCCcEEEEe-cC-----ceeCCEECCCCEEehhhcCCccCCCc-cCcHHHH
Confidence 345554445799988876 899999999999999886 43 2499999 69999998884 8997 7899999
Q ss_pred HHHHHHHhcc
Q 039489 149 VRELSACFSR 158 (304)
Q Consensus 149 v~~l~~~F~~ 158 (304)
+..|+..|..
T Consensus 134 L~sI~~ll~~ 143 (160)
T 2a4d_A 134 LQELRRLMMS 143 (160)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHHcc
Confidence 9999999864
No 46
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=98.54 E-value=5.6e-07 Score=79.07 Aligned_cols=100 Identities=16% Similarity=0.273 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCce
Q 039489 41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMI 116 (304)
Q Consensus 41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~ 116 (304)
+.+|+..+...-+ +.....-.+ .+|+...++| --.|.|..|.+ .|.+|++||+.||.|.+. |+
T Consensus 19 L~kEl~~l~~~~~---~~i~~~p~~----~nl~~W~~~I~GP~~TpYegG~f~l--~i~fP~~YP~~PP~v~f~-T~--- 85 (187)
T 2f4w_A 19 LKQDYLRIKKDPV---PYICAEPLP----SNILEWHYVVRGPEMTPYEGGYYHG--KLIFPREFPFKPPSIYMI-TP--- 85 (187)
T ss_dssp HHHHHHHHHHSCC---TTEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEEC-SC---
T ss_pred HHHHHHHHHhCCC---CCEEEEEcC----CccceeEEEEeCCCCCCCCCCEEEE--EEEcCCCCCCCCCccccc-CC---
Confidence 4478887765422 111111112 2566555555 35688988877 889999999999999885 42
Q ss_pred ecCCCCcccCCCceecccc----ccccCCCCCHHHHHHHHHHHhcc
Q 039489 117 IKRPHPHVTPSGLVSIPYL----QNWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 117 I~~~~~~Vd~~G~v~lpyL----~~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
|++|+.+|+||+.+| ++|++ ..+|..++..|...|..
T Consensus 86 ----~~~~~~~G~ICL~iL~~~~~~W~P-~~ti~~vL~si~sll~~ 126 (187)
T 2f4w_A 86 ----NGRFKCNTRLCLSITDFHPDTWNP-AWSVSTILTGLLSFMVE 126 (187)
T ss_dssp ----CSSBCTTSCBC----------CCT-TCCHHHHHHHHHHHHHS
T ss_pred ----CceeccCCeEeeeccccCccCCCC-cCcHHHHHHHHHHHhcC
Confidence 778899999999999 58987 88999999999998875
No 47
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=98.53 E-value=2e-07 Score=80.84 Aligned_cols=77 Identities=21% Similarity=0.271 Sum_probs=63.2
Q ss_pred EEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCccc-CCCceecccc---ccccCCCCCHHHH
Q 039489 73 LQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVT-PSGLVSIPYL---QNWIYPSSNLVDL 148 (304)
Q Consensus 73 L~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd-~~G~v~lpyL---~~W~~~~s~L~~L 148 (304)
..|.|----.|.|..|.+ .|.++++||+.||.|.+. |+ .-|++|| .+|+||+.+| .+|++ ..+|..+
T Consensus 73 ~~I~GP~~TpYegG~f~l--~i~fp~~YP~~PP~v~F~-T~-----i~HPNV~~~~G~ICl~iL~~~~~WsP-~~ti~~v 143 (170)
T 2hlw_A 73 GMIIGPPRTIYENRIYSL--KIECGPKYPEAPPFVRFV-TK-----INMNGVNSSNGVVDPRAISVLAKWQN-SYSIKVV 143 (170)
T ss_dssp EEECCCSSSTTSSCCBCE--EEECCSSCTTSCCEEEEC-BC-----CCCSSBCSSSCBBCTTTCHHHHTCCS-SCCHHHH
T ss_pred EEEeCCCCCCcCCcEEEE--EEECCCCCCCCCCeeEEe-cc-----cccCCEeCCCCEEEhhhcCCCCCCCc-cCcHHHH
Confidence 344554345799998887 899999999999999886 43 2499999 7999998888 58997 7899999
Q ss_pred HHHHHHHhcc
Q 039489 149 VRELSACFSR 158 (304)
Q Consensus 149 v~~l~~~F~~ 158 (304)
+..|..+|..
T Consensus 144 L~sI~~ll~~ 153 (170)
T 2hlw_A 144 LQELRRLMMS 153 (170)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHcc
Confidence 9999998875
No 48
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=98.51 E-value=3.1e-07 Score=84.40 Aligned_cols=76 Identities=28% Similarity=0.550 Sum_probs=62.8
Q ss_pred EEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccC-CCceeccccc-cccCCCCCHHHHHHH
Q 039489 74 QADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTP-SGLVSIPYLQ-NWIYPSSNLVDLVRE 151 (304)
Q Consensus 74 ~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~-~G~v~lpyL~-~W~~~~s~L~~Lv~~ 151 (304)
.|.|.---.|.|..|.+ .|.||.+||+.||.|.+. |+ + -|++||. +|+||+.+|. +|.+ ..+|..++..
T Consensus 95 ~I~GP~~TpYegG~f~l--~i~fp~~YP~~PP~V~F~-T~--i---~HPNV~~~~G~ICL~iL~~~WsP-~~ti~~vL~s 165 (253)
T 3e46_A 95 EIAGPPDTPYEGGRYQL--EIKIPETYPFNPPKVRFI-TK--I---WHPNISSVTGAICLDILKDQWAA-AMTLRTVLLS 165 (253)
T ss_dssp EEECCTTSTTTTCEEEE--EEECCTTTTSSCCEEEES-SC--C---CBTTBCTTTCBBCCGGGTTCCCT-TCCHHHHHHH
T ss_pred EEECCCCCCcCCCEEEE--EEECCCCCCCCCCeeeec-CC--C---ccCCccCCCCeeecccccCCCCC-CCCHHHHHHH
Confidence 34444445788988877 889999999999999885 43 2 4999995 9999999995 8987 8999999999
Q ss_pred HHHHhcc
Q 039489 152 LSACFSR 158 (304)
Q Consensus 152 l~~~F~~ 158 (304)
|..+|..
T Consensus 166 I~~ll~~ 172 (253)
T 3e46_A 166 LQALLAA 172 (253)
T ss_dssp HHHHHHS
T ss_pred HHHHhcC
Confidence 9998875
No 49
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=98.51 E-value=8.3e-07 Score=84.19 Aligned_cols=117 Identities=18% Similarity=0.402 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhCCC-Cccccceee--cCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCcee
Q 039489 41 IRQHLLTLISTFPS-LDPKTATFT--HNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMII 117 (304)
Q Consensus 41 v~~dv~~vl~~yp~-L~p~~~~ft--~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I 117 (304)
+.+++..+...-+. ... ..|. ..|.-..--..|.|.---.|.|..|.+ .|.||.+||+.||.|.+.-..+-.+
T Consensus 81 L~kEl~~L~k~~p~g~~~--~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l--~I~fP~dYP~~PP~V~F~T~~g~~~ 156 (323)
T 3ceg_A 81 LAQEAVTLSTSLPLSSSS--SVFVRCDEERLDIMKVLITGPADTPYANGCFEF--DVYFPQDYPSSPPLVNLETTGGHSV 156 (323)
T ss_dssp HHHHHHHHHHHCCCCSSC--CEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEE--EEECCTTTTTSCCEEEECCSTTTTC
T ss_pred HHHHHHHHHhCCCCCccc--ceeecccCCCccccEEEEeCCCCCCcCCCEEEE--EEeCCCCCCCCCCeEEEeccCCCcc
Confidence 34677777665432 211 2222 222222222345665556799988877 8899999999999999863222111
Q ss_pred cCCCCcccCCCceeccccc--------cccCCCCCHHHHHHHHHHHhccCCCC
Q 039489 118 KRPHPHVTPSGLVSIPYLQ--------NWIYPSSNLVDLVRELSACFSREPPL 162 (304)
Q Consensus 118 ~~~~~~Vd~~G~v~lpyL~--------~W~~~~s~L~~Lv~~l~~~F~~~pPl 162 (304)
.-|++|+.+|+||+.+|. +|++..++|..++..|+.+|...-|-
T Consensus 157 -ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn 208 (323)
T 3ceg_A 157 -RFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPY 208 (323)
T ss_dssp -CCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGG
T ss_pred -cccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCC
Confidence 239999999999999996 78874458999999999998644343
No 50
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=98.50 E-value=1.5e-07 Score=84.53 Aligned_cols=75 Identities=23% Similarity=0.437 Sum_probs=62.6
Q ss_pred EEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccC-CCceeccccc-cccCCCCCHHHHHHHH
Q 039489 75 ADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTP-SGLVSIPYLQ-NWIYPSSNLVDLVREL 152 (304)
Q Consensus 75 L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~-~G~v~lpyL~-~W~~~~s~L~~Lv~~l 152 (304)
|.|.---.|.|..|.+ .|.+|.+||+.||.|.+. |+ + -|++||. +|+||+..|. +|++ ..+|..++..|
T Consensus 39 I~GP~~TpYegG~f~l--~i~fP~~YP~~PP~V~F~-T~--i---~HPNI~~~~G~ICL~iL~~~WsP-~~ti~~VL~sI 109 (215)
T 1tte_A 39 FLGPPGTPYEGGKFVV--DIEVPMEYPFKPPKMQFD-TK--V---YHPNISSVTGAICLDILRNAWSP-VITLKSALISL 109 (215)
T ss_dssp CCEEEEETTEEECCEE--EEECCSCSSSCCCEEEET-TT--C---CCSSSCSSSSCCCSSTTTCCSCT-TCCHHHHHHHH
T ss_pred EeCCCCCCcCCCEEEE--EEeCCccCCCCCCccccc-CC--C---ccCcCcCCCCEEECccCCCCCCC-cCcHHHHHHHH
Confidence 3343334688888876 899999999999999995 43 2 4999999 9999999998 6997 78999999999
Q ss_pred HHHhcc
Q 039489 153 SACFSR 158 (304)
Q Consensus 153 ~~~F~~ 158 (304)
..+|..
T Consensus 110 ~sLL~~ 115 (215)
T 1tte_A 110 QALLQS 115 (215)
T ss_dssp HHHHTS
T ss_pred HHHHhC
Confidence 999875
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=98.48 E-value=1.6e-07 Score=82.47 Aligned_cols=80 Identities=15% Similarity=0.300 Sum_probs=63.7
Q ss_pred eEEEEEeccc-----ccccC-----------cccceeEEEeecccCCCCCCeEEEecCCCceecCCCC-cccCCCceecc
Q 039489 71 NLLQADGTVP-----MPFQG-----------VTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHP-HVTPSGLVSIP 133 (304)
Q Consensus 71 ~LL~L~GtIP-----i~y~g-----------~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~-~Vd~~G~v~lp 133 (304)
+|+...++|- -.|.| ..| -+.|.||++||+.||.|.+. |+ ++ |+ +||.+|.||+.
T Consensus 58 nl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f--~l~i~fp~~YP~~PP~V~f~-tp--i~---hPnnV~~~G~ICL~ 129 (186)
T 1zuo_A 58 SLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYI--LLNFSFKDNFPFDPPFVRVV-LP--VL---SGGYVLGGGALCME 129 (186)
T ss_dssp EEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSE--EEEEECCTTTTSSCCEEEEE-ES--CE---ESTTBCGGGBBCCG
T ss_pred ccceeEEEEECCCCCCCccccchhhccccCceEE--EEEEECCCCCCCCCCeEEEe-CC--cc---CCCccCCCCcEEec
Confidence 6777777764 23554 344 45899999999999999886 33 33 77 79999999999
Q ss_pred ccc--cccCCCCCHHHHHHHHHHHhccC
Q 039489 134 YLQ--NWIYPSSNLVDLVRELSACFSRE 159 (304)
Q Consensus 134 yL~--~W~~~~s~L~~Lv~~l~~~F~~~ 159 (304)
.|. +|++ ..+|..+|..|+.+|.+-
T Consensus 130 iL~~~~WsP-~~ti~~VL~sI~slL~~p 156 (186)
T 1zuo_A 130 LLTKQGWSS-AYSIESVIMQINATLVKG 156 (186)
T ss_dssp GGSTTTCCT-TSCHHHHHHHHHHHHHHT
T ss_pred cCCCCCCCC-cCcHHHHHHHHHHHHcCC
Confidence 996 7997 889999999999998764
No 52
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=98.44 E-value=7.6e-07 Score=75.66 Aligned_cols=78 Identities=21% Similarity=0.376 Sum_probs=62.2
Q ss_pred eEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCccc-CCCceeccccc-cccCCCCC
Q 039489 71 NLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVT-PSGLVSIPYLQ-NWIYPSSN 144 (304)
Q Consensus 71 ~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd-~~G~v~lpyL~-~W~~~~s~ 144 (304)
+|....++| --.|.|..|.+ .|.+|++||+.||.|.+. |. .-|++|| .+|+||+..|. +|++ ..+
T Consensus 27 ~l~~w~~~i~Gp~~tpyegg~f~~--~i~fp~~YP~~pP~v~f~-t~-----i~HPni~~~~G~iCl~il~~~W~p-~~~ 97 (152)
T 2onu_A 27 STQDFDVMFHGPNGTAYEGGIWKV--HVTLPDDYPFASPSIGFM-NK-----LLHPNVDEASGSVCLDVINQTWTP-LYS 97 (152)
T ss_dssp EEEEEEEEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC-----CCCTTBCTTTCBBCHHHHHHHCCT-TCC
T ss_pred ccceEEEEEECCCCCcccceEEEE--EEcCcccCCCCCCeEEEe-cC-----CccCcCcCcCCeEecccccccCCC-CCC
Confidence 566655555 35788888876 889999999999999886 43 2499999 59999999997 6997 788
Q ss_pred HHHHHHH-HHHHhc
Q 039489 145 LVDLVRE-LSACFS 157 (304)
Q Consensus 145 L~~Lv~~-l~~~F~ 157 (304)
|..++.. +..+|.
T Consensus 98 i~~vl~~ii~~Ll~ 111 (152)
T 2onu_A 98 LVNVFEVFLPQLLT 111 (152)
T ss_dssp HHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 9888877 456665
No 53
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=98.38 E-value=3.3e-07 Score=80.11 Aligned_cols=76 Identities=20% Similarity=0.440 Sum_probs=61.8
Q ss_pred EEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccC-CCceeccccc-cccCCCCCHHHHHH
Q 039489 73 LQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTP-SGLVSIPYLQ-NWIYPSSNLVDLVR 150 (304)
Q Consensus 73 L~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~-~G~v~lpyL~-~W~~~~s~L~~Lv~ 150 (304)
..|.|.---.|.|..|.+ .|.+|++||+.||.|.+. |+ .-|++||. +|+||+..|. +|++ ..+|..++.
T Consensus 55 ~~I~GP~~tpYegG~f~l--~i~fp~~YP~~PP~V~F~-t~-----i~HPNV~~~~G~ICL~iL~~~WsP-~~ti~~iL~ 125 (179)
T 2z5d_A 55 VKFYGPQGTPYEGGVWKV--RVDLPDKYPFKSPSIGFM-NK-----IFHPNIDEASGTVCLDVINQTWTA-LYDLTNIFE 125 (179)
T ss_dssp EEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC-----CCBTTBCTTTCBBCHHHHHHHCCT-TCCTTHHHH
T ss_pred EEEECCCCCCccCCEEEE--EeeCCCCCCCCCceEEEe-cC-----CccCcCCCCCCeEeccccccCCCC-CCCHHHHHH
Confidence 345554446789988877 889999999999999985 43 24999999 9999999995 8997 788888888
Q ss_pred H-HHHHhc
Q 039489 151 E-LSACFS 157 (304)
Q Consensus 151 ~-l~~~F~ 157 (304)
. |..+|.
T Consensus 126 s~I~~Ll~ 133 (179)
T 2z5d_A 126 SFLPQLLA 133 (179)
T ss_dssp THHHHHHH
T ss_pred HHHHHHHh
Confidence 8 777775
No 54
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=98.37 E-value=3.1e-07 Score=79.64 Aligned_cols=101 Identities=18% Similarity=0.316 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCC
Q 039489 41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRP 120 (304)
Q Consensus 41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~ 120 (304)
+.+|+..+...-.+ +.. +|.-..--+.|.|.---.|.|..|.+ .|.++++||+.||.|.+. |. .-
T Consensus 17 L~~El~~l~~~~~~------v~~-~~~l~~w~~~I~GP~~tpyegg~f~~--~i~fp~~YP~~PP~v~F~-t~-----i~ 81 (171)
T 1yf9_A 17 REMDYMRLCNSTRK------VYP-SDTVAEFWVEFKGPEGTPYEDGTWML--HVQLPSDYPFKSPSIGFC-NR-----IL 81 (171)
T ss_dssp HHHHHHHHHSSSSC------EEE-CSSTTEEEEEEECCTTSTTTTCEEEE--EEECCTTTTTSCCEEEES-SC-----CC
T ss_pred HHHHHHHHHhCCCC------CCC-CCCceEEEEEEECCCCCCccCceEEE--EEEcCCCCCCCCCeEEee-cC-----cc
Confidence 34788887654211 222 23222233445554445789988887 899999999999999985 43 24
Q ss_pred CCccc-CCCceeccccc-cccCCCCCHHHHHHHH-HHHhc
Q 039489 121 HPHVT-PSGLVSIPYLQ-NWIYPSSNLVDLVREL-SACFS 157 (304)
Q Consensus 121 ~~~Vd-~~G~v~lpyL~-~W~~~~s~L~~Lv~~l-~~~F~ 157 (304)
|++|| .+|+||+.+|. +|++ ..+|..++..+ ..+|.
T Consensus 82 HPNi~~~~G~iCl~iL~~~W~p-~~~i~~vL~sil~~ll~ 120 (171)
T 1yf9_A 82 HPNVDERSGSVCLDVINQTWTP-MYQLENIFDVFLPQLLR 120 (171)
T ss_dssp BTTBCTTTCBBCHHHHHHHCCT-TCCTHHHHHTHHHHHHH
T ss_pred cccCcccCCeEeccccccCCCC-CCcHHHHHHHHHHHHHh
Confidence 99999 59999999998 8997 77888888876 46665
No 55
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=98.35 E-value=2.7e-06 Score=82.71 Aligned_cols=102 Identities=23% Similarity=0.416 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhCCCCccccceeecCCCceeeEEEEEecc----cccccCcccceeEEEeecccCCCCCCeEEEecCCCce
Q 039489 41 IRQHLLTLISTFPSLDPKTATFTHNDGRSVNLLQADGTV----PMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMI 116 (304)
Q Consensus 41 v~~dv~~vl~~yp~L~p~~~~ft~~dG~~~~LL~L~GtI----Pi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~ 116 (304)
+.+|+..+.+.-+. ... .. .++ .+|+...|+| -..|.|..|.+ .|.+|.+||+.||.|.+. |+
T Consensus 8 L~kEl~~l~~~~~~-~~~--~~--p~~--~nl~~w~~~i~Gp~~tpyegg~f~~--~i~fp~~YP~~pP~v~f~-t~--- 74 (399)
T 4ddg_A 8 IHKELNDLARDPPA-QCS--AG--PVG--DDMFHWQATIMGPNDSPYQGGVFFL--TIHFPTDYPFKPPKVAFT-TR--- 74 (399)
T ss_dssp HHHHHHHHHHSCCS-SEE--EE--EET--TEEEEEEEEEECCTTSSSTTCEEEE--EEECCSSTTTSCCEEEES-SC---
T ss_pred HHHHHHHHHhCCCC-CEE--EE--EcC--CcceEEEEEEECCCCCCCCCCEEEE--EEECCcccCCCCcEEEee-cc---
Confidence 34777777654221 111 11 122 2566666666 35789998886 899999999999999886 43
Q ss_pred ecCCCCcccCCCceeccccc-cccCCCCCHHHHHHHHHHHhcc
Q 039489 117 IKRPHPHVTPSGLVSIPYLQ-NWIYPSSNLVDLVRELSACFSR 158 (304)
Q Consensus 117 I~~~~~~Vd~~G~v~lpyL~-~W~~~~s~L~~Lv~~l~~~F~~ 158 (304)
.-|++||.+|+||+..|. +|++ ..++..++..|...|..
T Consensus 75 --i~HPnv~~~G~iCl~il~~~W~p-~~~i~~vL~~i~~ll~~ 114 (399)
T 4ddg_A 75 --IYHPNINSNGSISLDILRSQWSP-ALTISKVLLSICSLLCD 114 (399)
T ss_dssp --CCCTTBCTTCBBCCGGGTTSCCT-TCCHHHHHHHHHHHHHS
T ss_pred --ccccccCCCCeEeCcccccCCCc-cccHHHHHHHHHHHHcC
Confidence 249999999999999995 8987 78999999999998875
No 56
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=97.72 E-value=5.7e-05 Score=65.66 Aligned_cols=71 Identities=11% Similarity=0.139 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039489 230 VFKRNAVNKLVEMVHADITGMRKAREVEV-EGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNS 300 (304)
Q Consensus 230 ~~r~s~lsal~dkl~~el~~l~~t~~ae~-e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~ 300 (304)
+.+.+.|+++.++.+.++.+...+.++++ .++.+.+.+|+.+.++|+.+++.|++++++|+++++.+..+.
T Consensus 15 ~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~ 86 (174)
T 2p22_A 15 QNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANR 86 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999988888888888888 777889999999999999999999999999999999887743
No 57
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=97.59 E-value=3.5e-05 Score=66.61 Aligned_cols=59 Identities=20% Similarity=0.372 Sum_probs=46.9
Q ss_pred cccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceecccccc--ccC--CCCCHHHHH
Q 039489 86 VTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQN--WIY--PSSNLVDLV 149 (304)
Q Consensus 86 ~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~~--W~~--~~s~L~~Lv 149 (304)
..|.+.+.|-||++||..||.|.+ ++.++. |++|+.+|+|||..|.+ |.. +..++..++
T Consensus 81 ~~y~F~L~~~fPe~YP~~PPeV~F-~~~~~~----hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL 143 (172)
T 2z6o_A 81 LKYEFDIEFDIPITYPTTAPEIAV-PELDGK----TAKMYRGGKICLTDHFKPLWARNVPKFGLAHLM 143 (172)
T ss_dssp EEEEEEEEEECCTTTTTSCCCCBC-GGGTTT----CSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHH
T ss_pred cceEEEEEEECCCCCCCCCCeeee-CCCCCC----CCCCCCCCcEechhhccccccccCCccCHHHHH
Confidence 467888899999999999999988 454443 89999999999999943 662 366766555
No 58
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=97.24 E-value=0.00047 Score=59.89 Aligned_cols=68 Identities=13% Similarity=0.251 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 039489 236 VNKLVEMVHADITGMRKARE-VEVEGLFSTQALL----RRREEEIDRGLKELQDEREGLEQQLQIVLMNSDIL 303 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~-ae~e~l~~~q~eL----~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~ 303 (304)
-+++.++|+.-|.++.++.. .++|.++..|.+| +++++.++++.++|++++++||++.+.|.+++++|
T Consensus 10 ~~~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l 82 (174)
T 2p22_A 10 HHEMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVL 82 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566778888888888665 8888998887655 99999999999999999999999999999999876
No 59
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=96.16 E-value=0.0014 Score=55.79 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=44.9
Q ss_pred EecccccccCcccceeEEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccccccC
Q 039489 76 DGTVPMPFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIY 140 (304)
Q Consensus 76 ~GtIPi~y~g~~ynIPi~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~~W~~ 140 (304)
.|.-=..|+-.+|-+-+.|-+|.+||..||.|.+ |+.++ .|+.+..+|+|||..+ |.+
T Consensus 73 ~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~F-p~ldg----kt~kmYr~GkICLdIh--wkP 130 (168)
T 3kpa_A 73 YGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIAL-PELEG----KTVKMYRGGKICMTTH--FFP 130 (168)
T ss_dssp EEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBC-GGGTT----TCSSEETTTEECCCTT--HHH
T ss_pred cCccceeeccceeEEEEEEeCCccCCCCCCEeec-ccccC----cCccccCCCcEEeccc--cch
Confidence 3433333455589999999999999999999988 56543 3889999999999885 763
No 60
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.82 E-value=0.097 Score=39.86 Aligned_cols=36 Identities=22% Similarity=0.439 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSD 301 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~ 301 (304)
++++.+++.+++.++.|++|...++.+|..|..+.|
T Consensus 44 ~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 44 QNAQHQREELERENNHLKEQQNGWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 677777888999999999999999999999988765
No 61
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=95.70 E-value=0.073 Score=39.50 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489 237 NKLVEMVHADITGMRKAREVEVEGLFSTQ-ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSD 301 (304)
Q Consensus 237 sal~dkl~~el~~l~~t~~ae~e~l~~~q-~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~ 301 (304)
+.+...+|+.-+++-....+|+|..++.+ ++|...-..=.+.++..+.|..||.+.|+.|....+
T Consensus 8 ~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 8 TAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777888888888888888888887 677777666666677777777777777777765543
No 62
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.77 E-value=1.7 Score=35.34 Aligned_cols=61 Identities=11% Similarity=0.172 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
+.+...++..+...|..+.++|.+.+...+ ..|..++.+|+..|..|....++.+.....|
T Consensus 39 le~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L 102 (129)
T 2fxo_A 39 LEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAEL 102 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555555555554444 4555555555666655555555544444444
No 63
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=92.57 E-value=1 Score=37.36 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 274 EIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
.+++.+++|++|..+|++++.+|..
T Consensus 107 ~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 107 SSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666643
No 64
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=92.44 E-value=0.98 Score=43.51 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 240 VEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 240 ~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
.+++|..+..++++...-..+...+|+.|++...+-++-|++|+.|..+|+..|+.++..
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 406 LTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAE 465 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444455667777776666677777777777777777766543
No 65
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.17 E-value=0.87 Score=44.95 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 039489 278 GLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 278 ~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
.+.+|++|.+.+++.+..++.+
T Consensus 559 ~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 559 KQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 66
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=91.86 E-value=2.5 Score=34.16 Aligned_cols=54 Identities=9% Similarity=0.131 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489 248 TGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSD 301 (304)
Q Consensus 248 ~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~ 301 (304)
.+-+.|...++++|.+.++.-.++-++|+..|+.|.++..+.+..++.|+..+.
T Consensus 49 aTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 49 ATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 344556666777777655443444556666666666666666666666655443
No 67
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.55 E-value=1.1 Score=48.53 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 262 FSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 262 ~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
..+++++.+-+++|++.|..|++|++.|++++..|+
T Consensus 1008 ~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1008 KTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444555555556666666665555554
No 68
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.49 E-value=1.7 Score=42.85 Aligned_cols=9 Identities=44% Similarity=0.534 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 039489 284 DEREGLEQQ 292 (304)
Q Consensus 284 ~E~~eLe~~ 292 (304)
+|+++||+.
T Consensus 544 ~~~~~le~~ 552 (597)
T 3oja_B 544 QENIALEKQ 552 (597)
T ss_dssp HHHHHHHHH
T ss_pred hhhHHHHHH
Confidence 333333333
No 69
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=90.18 E-value=1.3 Score=29.69 Aligned_cols=37 Identities=24% Similarity=0.405 Sum_probs=29.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 258 VEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 258 ~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
+..|.+-.-+|++.++.|+++|..|++|.+.||.++.
T Consensus 12 iarlkkdnlqlerdeqnlekiianlrdeiarleneva 48 (52)
T 3he5_B 12 IARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 3344555567888899999999999999999998764
No 70
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=89.74 E-value=1.4 Score=35.32 Aligned_cols=64 Identities=11% Similarity=0.214 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 231 FKRNAVNKLVEMVHADITGMRKAREVEVEG----LFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 231 ~r~s~lsal~dkl~~el~~l~~t~~ae~e~----l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
++-+-|....++|+.|+++.+...+..... ...+| +.|+..++.+..-|++|+.+.+.||++--
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R 73 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 73 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 566677777888888887777755554332 33344 66777777888888888888888877643
No 71
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=89.46 E-value=6.1 Score=31.57 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489 272 EEEIDRGLKELQDEREGLEQQLQIVLMNSD 301 (304)
Q Consensus 272 ~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~ 301 (304)
...|++-|..|+++++.|...|..|+.++|
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~ND 66 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQAND 66 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 333444444444444444444444443333
No 72
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=89.35 E-value=0.53 Score=31.59 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 263 STQALLRRREEEIDRGLKELQDEREGLEQQLQI 295 (304)
Q Consensus 263 ~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~ 295 (304)
.+..+|..|++.|++-|..|+.|.+.|.+.++.
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 466899999999999999999999999888864
No 73
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=89.08 E-value=3.8 Score=33.83 Aligned_cols=56 Identities=18% Similarity=0.152 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 240 VEMVHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQI 295 (304)
Q Consensus 240 ~dkl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~ 295 (304)
.+.+..+++++.+...++.+.+.+++ .++++.-+++.+-+..|+.+..+||..+..
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666666666666666666 555666667777777777777777766643
No 74
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=88.37 E-value=0.45 Score=35.73 Aligned_cols=70 Identities=14% Similarity=0.279 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 227 QTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 227 a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
..|-.|+..|+..++.|+.-+=......-.-.+-|...- ..|.++.+.++..+++|+++.++|+..|+.|
T Consensus 8 ~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 8 ALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677777888888777665433211111111122211 6667777777888888888888888888654
No 75
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=88.34 E-value=4 Score=29.93 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 245 ADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 245 ~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
.||....+..++|++.|..+=..|+..=.+..++=++|+++...++..+..|..+
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~ 60 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKK 60 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Confidence 3666777788999999999999999999999999999999999999998888643
No 76
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=88.04 E-value=3 Score=36.39 Aligned_cols=12 Identities=17% Similarity=0.254 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHh
Q 039489 286 REGLEQQLQIVL 297 (304)
Q Consensus 286 ~~eLe~~l~~l~ 297 (304)
+..|...|-.|.
T Consensus 104 ~~~l~~~ireLE 115 (189)
T 2v71_A 104 KEQLHKYVRELE 115 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 77
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=88.03 E-value=5.1 Score=32.46 Aligned_cols=54 Identities=7% Similarity=0.104 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 237 NKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 237 sal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
+.....|+.+++.++.+...+-..+..++......-..++..|..|+.+...+.
T Consensus 44 rr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r 97 (131)
T 3tnu_A 44 RRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLR 97 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777777777777667766665555555555555555555544433
No 78
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=87.65 E-value=6.4 Score=31.75 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 237 NKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGL 289 (304)
Q Consensus 237 sal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eL 289 (304)
+.....|+.+++.++.+...+-..+..++......-..++..|..|+.+...+
T Consensus 42 rr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~ 94 (129)
T 3tnu_B 42 NRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKA 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34456777788888887777777777766555555555555555555444433
No 79
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=87.42 E-value=3.4 Score=31.22 Aligned_cols=8 Identities=25% Similarity=0.185 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 039489 234 NAVNKLVE 241 (304)
Q Consensus 234 s~lsal~d 241 (304)
++.+++..
T Consensus 14 eLQSALea 21 (81)
T 1wt6_A 14 ELQEALEE 21 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444333
No 80
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=87.33 E-value=7.4 Score=30.14 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 264 TQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 264 ~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
+...|+++.+.+++.|++|+.+.+.+++.+..+..+
T Consensus 71 a~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~ 106 (117)
T 2zqm_A 71 AVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQ 106 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447888888888888888888888888888777653
No 81
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=86.88 E-value=6.6 Score=31.64 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039489 276 DRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 276 ~~~I~~L~~E~~eLe~~l~~l 296 (304)
.+-|++|++|.+.|++.|++.
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a 90 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDA 90 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 82
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=86.87 E-value=3.4 Score=33.78 Aligned_cols=58 Identities=19% Similarity=0.254 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 242 MVHADITGMRKAREVEVEGLFST--------QALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 242 kl~~el~~l~~t~~ae~e~l~~~--------q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
.++.|+++..++.+.......++ ..|+..-..+|+..|+.++...++|++.|..++.+
T Consensus 31 ~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~n 96 (130)
T 4dnd_A 31 VVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEAN 96 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444444444444444443321 24777778888888888888888888888877654
No 83
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=86.75 E-value=3.3 Score=32.57 Aligned_cols=61 Identities=18% Similarity=0.164 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----H--------------------HHHHHHHHHHHHHHHHHHHHHH
Q 039489 238 KLVEMVHADITGMRKAREVEVEGLFSTQALLRR----R--------------------EEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 238 al~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~----~--------------------~~~l~~~I~~L~~E~~eLe~~l 293 (304)
+-.++++.++++|....+.+.+.+..++.+|.+ | .+..++.++.|+.|.+.|...+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888888877777777766 1 1245667777777777777766
Q ss_pred HHHhh
Q 039489 294 QIVLM 298 (304)
Q Consensus 294 ~~l~~ 298 (304)
..|..
T Consensus 92 ~~lEe 96 (100)
T 1go4_E 92 RAMER 96 (100)
T ss_dssp TTCC-
T ss_pred HHHhc
Confidence 65543
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.63 E-value=4.1 Score=39.30 Aligned_cols=49 Identities=8% Similarity=0.026 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 246 DITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 246 el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
+++..+.....+++...+..+.|+++.+++++-+++++.+.++....++
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 425 EQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHH
Confidence 3333444444444444444445555555555555444444444444333
No 85
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=86.54 E-value=6.1 Score=31.65 Aligned_cols=56 Identities=9% Similarity=0.109 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 241 EMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 241 dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
++|+.++..++++.+.+++....++..+.+-.++-.+-|..|....+.-|..|..|
T Consensus 9 ~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~L 64 (112)
T 1x79_B 9 KKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEEL 64 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444333
No 86
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=86.36 E-value=7.3 Score=34.82 Aligned_cols=36 Identities=8% Similarity=0.197 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 261 LFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 261 l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
+..++++|...+..++..+.+++.+.++|......+
T Consensus 134 l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l 169 (256)
T 3na7_A 134 MLELEKLALELESLVENEVKNIKETQQIIFKKKEDL 169 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444555555544444444443
No 87
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=85.99 E-value=7 Score=28.00 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 232 KRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
|..+|.++..++.. ++.+......+++.+...=+.+.++...-.+.|+.|+.+..++|+.|
T Consensus 4 ~~~~~~~le~kl~~-lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~~~l 64 (65)
T 3m0d_C 4 KEKLLAELEGKLRV-FENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQQTL 64 (65)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Confidence 44566666555433 66666654445555444444443444444777888888888887644
No 88
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=85.62 E-value=4.3 Score=28.96 Aligned_cols=44 Identities=20% Similarity=0.315 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 246 DITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGL 289 (304)
Q Consensus 246 el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eL 289 (304)
|++....+.+|-+..|.+....|.++-..+.+.|.+|+.|...|
T Consensus 17 evK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 17 ELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 34444555666666666666666666566666777777766655
No 89
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=85.58 E-value=10 Score=28.88 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 264 TQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 264 ~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
+...|+++.+.+++.|++|+.+.+.+++.+..+..+
T Consensus 66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 66 LTEELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999999999888754
No 90
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=85.52 E-value=7.5 Score=30.19 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 039489 286 REGLEQQLQIV 296 (304)
Q Consensus 286 ~~eLe~~l~~l 296 (304)
.+.|.++|+-|
T Consensus 88 v~~L~Rriqll 98 (101)
T 3u1c_A 88 VASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 91
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=85.23 E-value=3.3 Score=44.84 Aligned_cols=13 Identities=15% Similarity=0.174 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 039489 284 DEREGLEQQLQIV 296 (304)
Q Consensus 284 ~E~~eLe~~l~~l 296 (304)
++...|+++.++|
T Consensus 1023 ~kv~~L~~e~~~L 1035 (1080)
T 2dfs_A 1023 QLVSELKEQNTLL 1035 (1080)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 92
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=85.08 E-value=6.4 Score=30.76 Aligned_cols=59 Identities=14% Similarity=0.077 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 239 LVEMVHADITGMRKAREVEVEGLFSTQALLRRREE----EIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 239 l~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~----~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
-..+|+.++.+-+..+.+--..+.+++.||+.=.. +.++||..-+.+...++.....|.
T Consensus 27 e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~ 89 (97)
T 2eqb_B 27 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLT 89 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444445555544433 556777777777777777766664
No 93
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=84.79 E-value=5.8 Score=35.47 Aligned_cols=47 Identities=11% Similarity=0.018 Sum_probs=23.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 253 AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 253 t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
..++..+.+..+++++...+.+++....+++.+.++++..+..+..+
T Consensus 119 ~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~ 165 (256)
T 3na7_A 119 EIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKK 165 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444455555555555555555555555555555433
No 94
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=84.15 E-value=1.3 Score=40.33 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=31.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 258 VEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 258 ~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
++.+.+.-..|..+.++|...++++++|...|+++|+.|.+
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44455555777777788888999999999999999988853
No 95
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=84.06 E-value=11 Score=28.24 Aligned_cols=23 Identities=4% Similarity=-0.005 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q 039489 243 VHADITGMRKAREVEVEGLFSTQ 265 (304)
Q Consensus 243 l~~el~~l~~t~~ae~e~l~~~q 265 (304)
..++++.|.....++.++..++.
T Consensus 7 mgkevEnLi~EN~eLl~TKNaLn 29 (77)
T 2w83_C 7 MGREVENLILENTQLLETKNALN 29 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666655554
No 96
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=83.40 E-value=3.7 Score=39.70 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 039489 241 EMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDI 302 (304)
Q Consensus 241 dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~ 302 (304)
+.|..|+++++++.+++.+...+++++++..+++| .+.+.++..|...++.+..+..|
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l----~~~~~~rr~l~n~~~~l~gnIrV 63 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL----FQSNMERKELHNTVMDLRDNIRV 63 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCEEE
Confidence 56778888888888888888888888887777665 44678888899999998877654
No 97
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=83.36 E-value=7.3 Score=30.36 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEID 276 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~ 276 (304)
.+|...+|..+.+|++-.++.+.+++.|..++.+++.=+++..
T Consensus 39 arLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~ 81 (96)
T 1t3j_A 39 ARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAV 81 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4455555555555555555555555555555544444444333
No 98
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=83.35 E-value=11 Score=29.17 Aligned_cols=12 Identities=33% Similarity=0.601 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 039489 285 EREGLEQQLQIV 296 (304)
Q Consensus 285 E~~eLe~~l~~l 296 (304)
+.+.|.++|+-|
T Consensus 87 evasLnRriqll 98 (101)
T 3u59_A 87 EVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 99
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=83.23 E-value=11 Score=28.04 Aligned_cols=11 Identities=18% Similarity=0.184 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 039489 242 MVHADITGMRK 252 (304)
Q Consensus 242 kl~~el~~l~~ 252 (304)
.++.+.+....
T Consensus 10 ~lk~e~d~a~~ 20 (81)
T 1ic2_A 10 MLKLDKENALD 20 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 100
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=83.23 E-value=8.3 Score=29.15 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 238 KLVEMVHADITGMRKARE---VEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 238 al~dkl~~el~~l~~t~~---ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
+++++|.++++.+.++-. -|++.|+.-...|.+..+.+..+.+.|++|.+.|......-.+
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~ 69 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 455566666555555433 3555565555666666666666666666666666666554433
No 101
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=83.13 E-value=2.9 Score=31.03 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 039489 279 LKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 279 I~~L~~E~~eLe~~l~~l~~ 298 (304)
|++|+.+..+.|..|+.|..
T Consensus 42 I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 102
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=82.45 E-value=10 Score=28.22 Aligned_cols=50 Identities=18% Similarity=0.183 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 237 NKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDER 286 (304)
Q Consensus 237 sal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~ 286 (304)
-+.+++|..-|+.|.....-++....+.|..|++|-.+|+..+..+..+.
T Consensus 6 EEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~~~~~ 55 (74)
T 3swf_A 6 EEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKPLIDTE 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence 34455566666666666666677778899999999999988887755443
No 103
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=82.12 E-value=11 Score=35.99 Aligned_cols=10 Identities=30% Similarity=0.378 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 039489 286 REGLEQQLQI 295 (304)
Q Consensus 286 ~~eLe~~l~~ 295 (304)
.+|||.+|..
T Consensus 445 ~~~~~~~~~~ 454 (471)
T 3mq9_A 445 VEELEGEITT 454 (471)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 104
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=81.82 E-value=2.8 Score=32.54 Aligned_cols=59 Identities=24% Similarity=0.308 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 239 LVEMVHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 239 l~dkl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
-..++..+|+++-+...+.-..+..++ ..|....++.=+.-+.++.+.-+++..+..+.
T Consensus 19 eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~ 80 (96)
T 3q8t_A 19 EEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVE 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443333333333333 23333333333444444444444444444443
No 105
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=81.77 E-value=18 Score=31.43 Aligned_cols=68 Identities=10% Similarity=0.189 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 229 EVFKRNAVNKLVEMVHADITGMRKAREVEVEG----LFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 229 E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~----l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
-.++-+-+.....+++.+++..+...+..... +.++| +.|+...+.+..-|++|+...+.||++.-..
T Consensus 54 ~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~ 128 (189)
T 2v71_A 54 AEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT 128 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34555666666777777777766555444333 33333 5666666677777777777777777665443
No 106
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=81.44 E-value=17 Score=28.25 Aligned_cols=47 Identities=21% Similarity=0.169 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 249 GMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 249 ~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
.-+.|...++++|.+-++. ..+-.+-+++|++|.+.|++.|++....
T Consensus 43 TCNqTV~tL~~SL~kekaq----~q~qq~~v~elqgEI~~Lnq~Lqda~~~ 89 (99)
T 3ni0_A 43 SCNLTVVTLQESLEKKVSQ----ALEQQARIKELENEVTKLNQELENLRIQ 89 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555444322 2222345788888888888888776543
No 107
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=81.29 E-value=11 Score=37.48 Aligned_cols=32 Identities=31% Similarity=0.361 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
++|+++..+|++.|..|+.+..++++.+..+.
T Consensus 119 ~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 119 QSLRARGREIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666677777777778878778777776654
No 108
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=81.03 E-value=14 Score=29.37 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc
Q 039489 280 KELQDEREGLEQQLQIVLMNSDI 302 (304)
Q Consensus 280 ~~L~~E~~eLe~~l~~l~~~~~~ 302 (304)
+++..|+++|+..+..|.....-
T Consensus 86 Ekl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 86 EKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHHHHHHh
Confidence 45777788888877777665443
No 109
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=80.81 E-value=12 Score=29.11 Aligned_cols=69 Identities=16% Similarity=0.036 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 230 VFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ--------ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 230 ~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q--------~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
.-|++.|....+.++.+++...+.+++.+.-+..-. ..+...-.++...|+.|+.+...++.-|..+..
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667777777788888777766544443332211 233444456666777777777776666666543
No 110
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=80.73 E-value=18 Score=28.22 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=26.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 256 VEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 256 ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
+.-++|++..++|...+.+++++.++|++-.+..+..+
T Consensus 52 anTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLl 89 (114)
T 2xzr_A 52 ANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEIL 89 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666778888888888888887776555444433
No 111
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=80.59 E-value=19 Score=28.32 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=24.4
Q ss_pred HHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 254 REVEVEGLFSTQALLRRREE---EIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 254 ~~ae~e~l~~~q~eL~~~~~---~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
.++.++.+-+++.+|..+.+ .+++.++.++.+..+|...+..+..
T Consensus 49 ~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~ 96 (107)
T 2no2_A 49 TQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEK 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566666544 3445555666666666666555543
No 112
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=80.41 E-value=11 Score=36.91 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
++|+++..+|++.|+.|+.+..++++.+..+..
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (455)
T 2dq0_A 72 DELLAKSREIVKRIGELENEVEELKKKIDYYLW 104 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888888888888888887654
No 113
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=80.03 E-value=18 Score=27.75 Aligned_cols=33 Identities=12% Similarity=0.205 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
.+|+.+...|...++.|.+|.+++.+++..+..
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 114
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=79.98 E-value=11 Score=29.16 Aligned_cols=56 Identities=29% Similarity=0.288 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhccccc
Q 039489 248 TGMRKAREVEVEGLFSTQA-------LLRRREEEIDRGLKELQDER---EGLEQQLQIVLMNSDIL 303 (304)
Q Consensus 248 ~~l~~t~~ae~e~l~~~q~-------eL~~~~~~l~~~I~~L~~E~---~eLe~~l~~l~~~~~~~ 303 (304)
+++.++-+++...+.++.+ .|+.=+.++++.++.|++|+ -+||.++.+.+....+|
T Consensus 21 eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~EklAkldLE~RLsKtEKDkAiL 86 (101)
T 1d7m_A 21 EQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELEKLARMELEARLAKTEKDRAIL 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhhhhhHHHHH
Confidence 3444455555555554442 33333456667777777664 57888888776655444
No 115
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=79.37 E-value=12 Score=37.04 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
++|.++..+|++.|..|+.+..+++.++..+..
T Consensus 74 ~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 74 KDLIAEKEKLSNEKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777778888888888888888888876643
No 116
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=79.23 E-value=14 Score=28.02 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 039489 281 ELQDEREGLEQQLQIV 296 (304)
Q Consensus 281 ~L~~E~~eLe~~l~~l 296 (304)
+|+++.+...+.|..|
T Consensus 62 ~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 62 RLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333334444444444
No 117
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=79.00 E-value=13 Score=29.20 Aligned_cols=51 Identities=12% Similarity=0.019 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 039489 243 VHADITGMRKAREVEVEGLFSTQALLRR---REEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 243 l~~el~~l~~t~~ae~e~l~~~q~eL~~---~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
+..+++.|++..++.-|.+..++.+++. .-+.+++.+..|+.+.++|...|
T Consensus 28 l~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 28 FMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777777777777744443 34455666677777777766555
No 118
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=78.79 E-value=16 Score=29.39 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEG----LFSTQALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~----l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
|...+++++.+++.++...+..+.. +..++++|...+...++.+.+.++-+.+++
T Consensus 20 Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 20 LYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677888887777655554444 445777777776665665555555444444
No 119
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=78.75 E-value=11 Score=28.14 Aligned_cols=13 Identities=8% Similarity=0.230 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 039489 284 DEREGLEQQLQIV 296 (304)
Q Consensus 284 ~E~~eLe~~l~~l 296 (304)
+-|-.||..|..+
T Consensus 61 nvK~~Ld~EIatY 73 (84)
T 1gk4_A 61 NVKMALDIEIATY 73 (84)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHH
Confidence 3344455555433
No 120
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=78.37 E-value=7.8 Score=37.17 Aligned_cols=12 Identities=42% Similarity=0.407 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDR 277 (304)
Q Consensus 266 ~eL~~~~~~l~~ 277 (304)
.+|+++.+.|++
T Consensus 116 ~eLe~~i~~lk~ 127 (390)
T 1deq_A 116 EDLRSRIEILRR 127 (390)
T ss_pred HHHHHHHHHHHH
Confidence 345554443333
No 121
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=77.33 E-value=3.8 Score=25.94 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 271 REEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 271 ~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
|-++|++-+++|=.++++|+.++.+|.+
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3456777777777777777777776653
No 122
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.25 E-value=4.8 Score=40.19 Aligned_cols=10 Identities=40% Similarity=0.385 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 039489 267 LLRRREEEID 276 (304)
Q Consensus 267 eL~~~~~~l~ 276 (304)
||+++.+.|+
T Consensus 114 ELRRrIqyLK 123 (562)
T 3ghg_A 114 DLRSRIEVLK 123 (562)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555544333
No 123
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=76.36 E-value=4 Score=26.11 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 272 EEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 272 ~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
-++|++-+++|-.++.+|+..+.+|.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34555555555555556655555553
No 124
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=76.32 E-value=19 Score=35.36 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 039489 278 GLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 278 ~I~~L~~E~~eLe~~l~~l~ 297 (304)
.|+.|+...++|+..|+.|+
T Consensus 169 ~i~~L~~~~~~l~~ki~~l~ 188 (464)
T 1m1j_B 169 SLRVLRAVIDSLHKKIQKLE 188 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 125
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=76.30 E-value=9.2 Score=36.91 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
++|+++..++++.|+.|+.+..+++..+..+..
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKEARLEALLL 99 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788888888888888888888876643
No 126
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=76.00 E-value=13 Score=25.54 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
..|.++.++|.+.+++-++|...|..+|++|
T Consensus 19 ~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 19 DSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555555555555555554
No 127
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=75.90 E-value=23 Score=26.69 Aligned_cols=70 Identities=19% Similarity=0.202 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 228 TEVFKRNAVNKLVEMVHADITGMRK-AREVEVEGLFS-TQ--ALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 228 ~E~~r~s~lsal~dkl~~el~~l~~-t~~ae~e~l~~-~q--~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
.|-.|+.-|+..++.|+.-+=.+.. ..-.-..-|.+ ++ ..|.+....+...++.|+++.+.|.++|+.|.
T Consensus 13 ~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 13 LERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666666666666665543320 00000111111 11 67777777777788889999999999988775
No 128
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=75.81 E-value=17 Score=35.82 Aligned_cols=52 Identities=6% Similarity=0.015 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 241 EMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQ 292 (304)
Q Consensus 241 dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~ 292 (304)
+.|+..++++-.+..+..+-...++..|+.++.++..+++.+++-.++||+.
T Consensus 103 qeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~ 154 (464)
T 1m1j_B 103 RDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELH 154 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 3344444444444444334444455555555555555554444444444333
No 129
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=75.71 E-value=11 Score=26.72 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=26.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 254 REVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 254 ~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
..++++.+..--.+|+.+..+|+.-|..|+.|..-|...|.
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555567777777777777777777777765553
No 130
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=75.43 E-value=24 Score=26.61 Aligned_cols=17 Identities=29% Similarity=0.040 Sum_probs=6.5
Q ss_pred HHHHHHHHhHHHHHHHH
Q 039489 252 KAREVEVEGLFSTQALL 268 (304)
Q Consensus 252 ~t~~ae~e~l~~~q~eL 268 (304)
...++||.+...++.||
T Consensus 17 SALeaEIqAKQ~i~EEL 33 (81)
T 1wt6_A 17 EALEEEVLTRQSLSREM 33 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333443333333333
No 131
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=75.33 E-value=17 Score=27.00 Aligned_cols=69 Identities=17% Similarity=0.194 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 227 QTEVFKRNAVNKLVEMVHADITGMRK-AREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQI 295 (304)
Q Consensus 227 a~E~~r~s~lsal~dkl~~el~~l~~-t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~ 295 (304)
..|-.||.-|+..++.|+.-+=.+.+ ....-.+-|.+.- ..|+++..++...++.|++|.++|.+.|+.
T Consensus 7 ~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 7 EMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667778888888887775422100 0000011111111 556666666677777777788888777653
No 132
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=75.25 E-value=4.6 Score=25.49 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 271 REEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 271 ~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
|-++|++-+++|=.++.+|+.++.+|.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 345666666667777777777666664
No 133
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=75.12 E-value=3.8 Score=28.46 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 039489 240 VEMVHADITGMRKAREVEVEGLFSTQALLR 269 (304)
Q Consensus 240 ~dkl~~el~~l~~t~~ae~e~l~~~q~eL~ 269 (304)
+|.|+.|+++|+...+++.+.+..++++|+
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666666666665555555554
No 134
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=75.08 E-value=15 Score=27.65 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 039489 246 DITGMRKAREVEVEGLFSTQALLRRR-------EEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 246 el~~l~~t~~ae~e~l~~~q~eL~~~-------~~~l~~~I~~L~~E~~eLe 290 (304)
+|+++....+++-+.+..++.+|... +.+|++.++.|..|..||.
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~ 65 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELS 65 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444444444444444444333332 3455555666665555443
No 135
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=74.60 E-value=29 Score=27.67 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 039489 261 LFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDI 302 (304)
Q Consensus 261 l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~ 302 (304)
|..++..-.+-++.+...+.+|...++.+...|.+|...+|-
T Consensus 61 L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~ 102 (112)
T 1x79_B 61 LEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDS 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 333333334444556666666666666666666666655553
No 136
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=74.27 E-value=19 Score=26.29 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=15.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 253 AREVEVEGLFSTQALLRRREEEIDRGLKELQDERE 287 (304)
Q Consensus 253 t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~ 287 (304)
..++.++.|....+.|..+.+.|...|..|..|.+
T Consensus 33 ~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444443
No 137
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=74.22 E-value=3.4 Score=26.47 Aligned_cols=24 Identities=17% Similarity=0.356 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 273 EEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 273 ~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
++|+.-+++|-.++.+||.++.+|
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL 27 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARL 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344555555555555555555544
No 138
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=74.13 E-value=32 Score=29.38 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVE 259 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e 259 (304)
..++++.++.+.+.++++++..+..+
T Consensus 74 ~ql~~I~~e~r~~~~~Lr~ql~akr~ 99 (175)
T 3lay_A 74 ATAQKIYDDYYTQTSALRQQLISKRY 99 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666665544443333
No 139
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=74.00 E-value=14 Score=24.93 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 039489 238 KLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDR 277 (304)
Q Consensus 238 al~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~ 277 (304)
+.++++..-++.+.....-++....+.|..|++|-.+|+.
T Consensus 5 ekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 5 EKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555566677777777666654
No 140
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=73.80 E-value=12 Score=30.55 Aligned_cols=31 Identities=16% Similarity=0.359 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
+.|++..++|++.|++|++.++.|+..++.+
T Consensus 84 ~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 114 (142)
T 3gp4_A 84 ELLKKQRIELKNRIDVMQEALDRLDFKIDNY 114 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444433
No 141
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=73.61 E-value=7.2 Score=29.44 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 039489 232 KRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALL 268 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL 268 (304)
+.+.|.++.++...+++.+..+....-+.+.++.+++
T Consensus 15 Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~ 51 (86)
T 1x8y_A 15 KEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARM 51 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666665555555444444444443333
No 142
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=73.47 E-value=21 Score=24.99 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 270 RREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 270 ~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
++..++++.+++=++-+.+||+.+-++.
T Consensus 24 qe~k~m~k~lEeEqkARk~LE~~vrk~~ 51 (56)
T 2w6b_A 24 QDNKKMKKSLEEEQRARKDLEKLVRKVL 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555566666555543
No 143
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.41 E-value=12 Score=29.35 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.1
Q ss_pred ceeEEEeecccCCCCCCeEEEe
Q 039489 89 NIPVIIWLMESYPRHPPCVYVN 110 (304)
Q Consensus 89 nIPi~Iwlp~~YP~~pPivyV~ 110 (304)
.+=+.|.+|.+||..+|.+.|.
T Consensus 56 ~~~L~v~~p~~YP~~~P~i~l~ 77 (128)
T 2ebm_A 56 QTTLKFTYSEKYPDEAPLYEIF 77 (128)
T ss_dssp BEEEEEECCSSTTTSCCEEEEE
T ss_pred eEEEEEEeCCCCCCCCceEEEE
Confidence 4557899999999999999886
No 144
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.27 E-value=34 Score=27.36 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 272 EEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 272 ~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
+...+..++.++....+||.+++.+
T Consensus 70 e~~~~~~l~~~q~~i~~lE~eL~~~ 94 (129)
T 3tnu_B 70 EQRGELALKDARNKLAELEEALQKA 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3333444445555555555555444
No 145
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=73.00 E-value=5.7 Score=24.93 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 273 EEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 273 ~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
++|++-+++|=.++.+||.++.+|.
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4566666666667777776666654
No 146
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=72.41 E-value=31 Score=28.91 Aligned_cols=38 Identities=11% Similarity=-0.114 Sum_probs=14.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 254 REVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQ 291 (304)
Q Consensus 254 ~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~ 291 (304)
.++++++..+.-+.|..+-..|+-.+..++++...|++
T Consensus 87 Leeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 87 LKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333333333333333333333333333
No 147
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=72.35 E-value=28 Score=31.31 Aligned_cols=53 Identities=17% Similarity=0.237 Sum_probs=43.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 039489 251 RKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDIL 303 (304)
Q Consensus 251 ~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~ 303 (304)
+.....||..+-.==+.|+..++.+-+-|..|+++..+||..|..+..+.|.+
T Consensus 172 K~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~ 224 (242)
T 3uux_B 172 KNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFL 224 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 45677788887776688999999999999999999999999998887776654
No 148
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.33 E-value=25 Score=28.23 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 039489 279 LKELQDEREGLEQQLQ 294 (304)
Q Consensus 279 I~~L~~E~~eLe~~l~ 294 (304)
++.++....+||.+++
T Consensus 79 l~~~q~~i~~lE~eL~ 94 (131)
T 3tnu_A 79 LAQIQEMIGSVEEQLA 94 (131)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 149
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=72.15 E-value=4.6 Score=25.42 Aligned_cols=26 Identities=15% Similarity=0.260 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 273 EEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 273 ~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
++|++-+++|-.|+.+|+.++.+|.+
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45666777777777777777776653
No 150
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=72.03 E-value=6.2 Score=24.77 Aligned_cols=25 Identities=4% Similarity=0.040 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 273 EEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 273 ~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
++|++-|++|-.++.+|+.++.++.
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4566667777777777777776664
No 151
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=71.42 E-value=38 Score=27.14 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039489 275 IDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 275 l~~~I~~L~~E~~eLe~~l~~l 296 (304)
.++....|..++..|+..++.|
T Consensus 95 eee~~~~L~~~kkkle~e~~~L 116 (129)
T 2fxo_A 95 EEEMNAELTAKKRKLEDECSEL 116 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 152
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=71.07 E-value=5.5 Score=25.20 Aligned_cols=27 Identities=11% Similarity=0.171 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 272 EEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 272 ~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
-++|++-+++|=.++.+|+.++.+|.+
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356677777777777777777776653
No 153
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=71.01 E-value=10 Score=31.07 Aligned_cols=34 Identities=9% Similarity=0.253 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 263 STQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 263 ~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
...+-|++..++|++.|++|++..+.|+..|..+
T Consensus 95 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 128 (148)
T 3gpv_A 95 HRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKY 128 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555666666666666666666555544
No 154
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=70.96 E-value=25 Score=34.75 Aligned_cols=30 Identities=13% Similarity=0.354 Sum_probs=22.0
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 269 RRR-EEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 269 ~~~-~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
.++ ..+|++.|..|+.+..+++.++..+..
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 139 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKLML 139 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 667777888888888888888776643
No 155
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=70.65 E-value=24 Score=30.10 Aligned_cols=22 Identities=5% Similarity=0.185 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039489 275 IDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 275 l~~~I~~L~~E~~eLe~~l~~l 296 (304)
|...+..|+..+.+|++.+..|
T Consensus 53 Lq~~~~~L~~~k~~Leke~~~L 74 (168)
T 3o0z_A 53 LQERNRILENSKSQTDKDYYQL 74 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555554444
No 156
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=70.46 E-value=5.7 Score=33.29 Aligned_cols=45 Identities=13% Similarity=0.099 Sum_probs=38.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 253 AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 253 t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
..++..+.+.+++.|++.-.+++++.|++.++..+.++..|..+.
T Consensus 86 seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia 130 (151)
T 1yke_B 86 SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFV 130 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888999999999999999999999999999888887654
No 157
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=70.23 E-value=37 Score=26.54 Aligned_cols=71 Identities=18% Similarity=0.216 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH------HHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 227 QTEVFKRNAVNKLVEMVHADIT------GMRKAR---EVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 227 a~E~~r~s~lsal~dkl~~el~------~l~~t~---~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
+.++|...=.+++-+++|+|-- +|.... ++.++.+.+-...|+........-|++|+.|.+.|....+.|.
T Consensus 6 d~eeFl~KdFSe~YE~~h~ErL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 6 DGSEFLQRDFSETYERYHTESLQNMSKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp --------CCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666532 222221 2222222222233444444444555556666666555555554
No 158
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=70.13 E-value=35 Score=26.25 Aligned_cols=14 Identities=29% Similarity=0.385 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 039489 280 KELQDEREGLEQQL 293 (304)
Q Consensus 280 ~~L~~E~~eLe~~l 293 (304)
.+.+..++=||-.+
T Consensus 77 sKtEKDkAiLELkL 90 (101)
T 1d7m_A 77 AKTEKDRAILELKL 90 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHH
Confidence 33333333333333
No 159
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=69.81 E-value=30 Score=25.43 Aligned_cols=20 Identities=15% Similarity=0.126 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039489 272 EEEIDRGLKELQDEREGLEQ 291 (304)
Q Consensus 272 ~~~l~~~I~~L~~E~~eLe~ 291 (304)
+.+|++.++.|..|..||..
T Consensus 41 ~~Elk~~~e~Ld~KI~eL~e 60 (72)
T 3cve_A 41 RSNLKTLLEILDGKIFELTE 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 34566666666666555543
No 160
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=69.61 E-value=25 Score=24.79 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=23.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 255 EVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 255 ~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
.+.++.|..--..|+.....|...|..|+.|...|...+
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445666666666677777777777776554
No 161
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=69.34 E-value=17 Score=34.90 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 039489 242 MVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDI 302 (304)
Q Consensus 242 kl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~ 302 (304)
.++.+++.+.++.+++.+.+.+++.++ +++++.+.+.+.++..|...++++..|..|
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~rr~l~n~~~elkgnIrV 63 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGM----KELNEILIKEETVRRTLHNELQELRGNIRV 63 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 344455555555544444444444443 344555566667777788888888776554
No 162
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=69.18 E-value=49 Score=28.60 Aligned_cols=65 Identities=12% Similarity=0.141 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhh
Q 039489 233 RNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRG----------LKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 233 ~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~----------I~~L~~E~~eLe~~l~~l~~ 298 (304)
++.+.++ ..+..++++++++.++.++.+.+++.+.+....+++.. ..+|+...++.|.....+..
T Consensus 75 ~s~ae~l-l~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~eeeS~~l~~ 149 (192)
T 2p22_C 75 RDQFKQL-EENFEDLHEQKDKVQALLENARILESKYVASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQLET 149 (192)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 34555677777777777777777776666555444322 35566666666666555543
No 163
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=69.17 E-value=15 Score=37.50 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039489 264 TQALLRRREEEIDRGLKEL 282 (304)
Q Consensus 264 ~q~eL~~~~~~l~~~I~~L 282 (304)
++......++.|++.++..
T Consensus 635 ~~~~i~~~~~~l~~~~~~~ 653 (695)
T 2j69_A 635 INDDIVSRKSELDNLVKQK 653 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 164
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=68.99 E-value=27 Score=27.26 Aligned_cols=23 Identities=13% Similarity=0.398 Sum_probs=19.5
Q ss_pred ceeEEEeecccCCCCCCeEEEec
Q 039489 89 NIPVIIWLMESYPRHPPCVYVNP 111 (304)
Q Consensus 89 nIPi~Iwlp~~YP~~pPivyV~p 111 (304)
.+=+.|.+|.+||..+|.+++..
T Consensus 60 ~~~L~~~~p~~YP~~~P~i~~~~ 82 (128)
T 2day_A 60 CFTLVLQVPAEYPHEVPQISIRN 82 (128)
T ss_dssp EEEEEEEECSSTTSSCCEEEEEE
T ss_pred eEEEEEEcCCCCCCCCCCeEEEc
Confidence 34467899999999999999974
No 165
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=68.78 E-value=35 Score=25.72 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 232 KRNAVNKLVEMVHADITGMRKAREVEVEG--L-FSTQALLRRREEEIDRGLKELQDEREGLEQQLQI 295 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t~~ae~e~--l-~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~ 295 (304)
....|....++++.+|.+|+...+.+..+ . -.-.+.-...+.+.+...++|.+-..++.+.|..
T Consensus 19 ~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~l~~ 85 (103)
T 4i0x_B 19 VTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEEAART 85 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554444 1 1112333344445555555555555555555443
No 166
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=68.56 E-value=7.9 Score=31.60 Aligned_cols=44 Identities=14% Similarity=0.096 Sum_probs=36.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 253 AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 253 t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
..++..+.+.+++.|++.-.+++.+.|++.++..+.++..+..+
T Consensus 86 see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i 129 (132)
T 1ykh_B 86 SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIEDF 129 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888889999988899888888888888888777543
No 167
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=67.96 E-value=36 Score=25.58 Aligned_cols=11 Identities=18% Similarity=0.296 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 039489 284 DEREGLEQQLQ 294 (304)
Q Consensus 284 ~E~~eLe~~l~ 294 (304)
.+++.|.+..+
T Consensus 66 ~~~~~L~~~n~ 76 (88)
T 1nkp_A 66 SEEDLLRKRRE 76 (88)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 168
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=67.47 E-value=35 Score=25.16 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=39.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 039489 251 RKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDIL 303 (304)
Q Consensus 251 ~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~ 303 (304)
+..+.+|++.+..-=+.|+.-++.+=+-|..++++...||..|..+..+-|.+
T Consensus 16 Knma~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~ 68 (72)
T 2xu6_A 16 KNSTMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34566777777766688888888888889999999999999998887776543
No 169
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=66.92 E-value=28 Score=23.87 Aligned_cols=39 Identities=3% Similarity=0.140 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 039489 241 EMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGL 279 (304)
Q Consensus 241 dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I 279 (304)
.+++..+.+.........+.+.++++.|++..+.|+..-
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~ 46 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIR 46 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555544444444444445555554444444433
No 170
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=66.87 E-value=79 Score=31.27 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 239 LVEMVHADITGMRKAREV---EVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 239 l~dkl~~el~~l~~t~~a---e~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
--++|+.++.+.+..... .+.+++..-+.+..+++..++.+..+++|++.++.++..+.
T Consensus 350 e~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~ 411 (602)
T 1cii_A 350 EWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGIN 411 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 456666555555543333 33333333355555666667777777777777766655543
No 171
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=66.83 E-value=7.5 Score=24.58 Aligned_cols=26 Identities=15% Similarity=0.265 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 272 EEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 272 ~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
-++|++-+++|=.++.+|+.++.+|.
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 34566666666677777777666664
No 172
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=66.62 E-value=46 Score=26.33 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 039489 241 EMVHADITGMRKAREVEVEGLFSTQA 266 (304)
Q Consensus 241 dkl~~el~~l~~t~~ae~e~l~~~q~ 266 (304)
+.++..++.++...++|+..-..+++
T Consensus 44 dn~~~~~edfk~KyE~E~~~r~~~E~ 69 (119)
T 3ol1_A 44 DNLAEDIMRLREKLQEEMLQREEAEN 69 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44445555555555555554444443
No 173
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=66.32 E-value=15 Score=22.55 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 270 RREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 270 ~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
+.-.+|+..+.+|++..+.||.-+|
T Consensus 6 e~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 6 EDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333455555555555555555443
No 174
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=65.79 E-value=48 Score=26.23 Aligned_cols=8 Identities=25% Similarity=0.588 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 039489 289 LEQQLQIV 296 (304)
Q Consensus 289 Le~~l~~l 296 (304)
||..++.|
T Consensus 88 LE~~iesL 95 (119)
T 3ol1_A 88 LERKVESL 95 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444333
No 175
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=65.59 E-value=26 Score=25.84 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 274 EIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
++++.|.+.+++..+|...|.++.
T Consensus 44 eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 44 ELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444445555555555554443
No 176
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=65.08 E-value=5 Score=33.21 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.4
Q ss_pred ceeEEEeecccCCCCCCeEEEec
Q 039489 89 NIPVIIWLMESYPRHPPCVYVNP 111 (304)
Q Consensus 89 nIPi~Iwlp~~YP~~pPivyV~p 111 (304)
.|=+.|.+|.+||..+|.+.|.-
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~ 98 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRS 98 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEEC
T ss_pred eEEEEEEcCCCCCCCCCcEEEEe
Confidence 56679999999999999999974
No 177
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=64.83 E-value=31 Score=26.78 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 226 DQTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 226 ~a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
..-++--.+-|+.++++|...+..-.+..++|++.|.+--+.|+. +.+..+.|+.|-.-|+.+|+.-
T Consensus 24 sncshQVQqELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~----iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 24 ANCSHQVQQEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEK----MQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHH
Confidence 344566667788888888888888888888888777665555543 4444455666666666666554
No 178
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=64.59 E-value=6.9 Score=36.37 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHh
Q 039489 144 NLVDLVRELSACF 156 (304)
Q Consensus 144 ~L~~Lv~~l~~~F 156 (304)
.+++++.-|+.+.
T Consensus 102 ~~Lg~L~WLvel~ 114 (315)
T 2ve7_A 102 HIVAALVWLIDCI 114 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3666666665543
No 179
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=64.36 E-value=61 Score=28.38 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHhccC-CCC
Q 039489 144 NLVDLVRELSACFSRE-PPL 162 (304)
Q Consensus 144 ~L~~Lv~~l~~~F~~~-pPl 162 (304)
.--+.+..|..+|+.. .|.
T Consensus 62 ~~eey~~~l~~aL~~~~~p~ 81 (213)
T 1ik9_A 62 EKGKYVGELRKALLSGAGPA 81 (213)
T ss_dssp CHHHHHHHHHHHHCC----C
T ss_pred CHHHHHHHHHHHHhCCCCCC
Confidence 5566788889999877 453
No 180
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=64.13 E-value=62 Score=26.90 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 233 RNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRRE-------EEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 233 ~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~-------~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
...+.+.++.....|.+..+..++|++.-.++..-|+.-. .+.++.+++.+++.+.+.....+|.+
T Consensus 70 ~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~ 142 (152)
T 4fla_A 70 AERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKS 142 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666554443333 33444555555555555544444443
No 181
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=64.12 E-value=60 Score=26.99 Aligned_cols=45 Identities=20% Similarity=0.177 Sum_probs=31.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 039489 259 EGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDIL 303 (304)
Q Consensus 259 e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~ 303 (304)
.++.+-...++.....++..+..++.+.++|+...++|....-|.
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIs 113 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQIS 113 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 555554455555566777888888888888888888887665554
No 182
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=64.09 E-value=7.7 Score=25.70 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039489 270 RREEEIDRGLKELQDEREG 288 (304)
Q Consensus 270 ~~~~~l~~~I~~L~~E~~e 288 (304)
.+-.+|+.-|..|+.|..-
T Consensus 17 ~~naeLEervstLq~EN~m 35 (42)
T 2oqq_A 17 NKNSELEERLSTLQNENQM 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHH
Confidence 3333333333333333333
No 183
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=64.06 E-value=49 Score=26.63 Aligned_cols=28 Identities=11% Similarity=0.076 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489 274 EIDRGLKELQDEREGLEQQLQIVLMNSD 301 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~l~~~~~ 301 (304)
..+.-+..+++.+.+|++.|.......|
T Consensus 72 ~y~~l~k~Y~~~~keLd~~ik~qekiId 99 (119)
T 3etw_A 72 QYQELASKYEDALKKLEAEMEQQKAVIS 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567788888888888876665444
No 184
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=63.89 E-value=38 Score=24.38 Aligned_cols=58 Identities=9% Similarity=0.130 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 235 AVNKLVEMVHADITGMRKAREVEVEGLFSTQ-ALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 235 ~lsal~dkl~~el~~l~~t~~ae~e~l~~~q-~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
--.++..+.+.|+++.....-+++......+ .+|+.-+. .|.+|++....|+-.|+.+
T Consensus 17 QYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~----Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 17 QYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQ----ESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHhh
Confidence 4567888889999988877666655444443 55554433 3455555555555555544
No 185
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=63.63 E-value=45 Score=25.08 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 272 EEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 272 ~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
-.+++....+|...+.+||..|..+.+
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777788877777654
No 186
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=63.30 E-value=5.4 Score=26.61 Aligned_cols=29 Identities=10% Similarity=0.216 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 039489 274 EIDRGLKELQDEREGLEQQLQIVLMNSDI 302 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~l~~~~~~ 302 (304)
.+-+++.+|....++||++|..|+.|-|.
T Consensus 6 ~mydlvsel~~r~e~LE~Ri~~LE~KLd~ 34 (43)
T 2pnv_A 6 IMYDMISDLNERSEDFEKRIVTLETKLET 34 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666555443
No 187
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=63.24 E-value=16 Score=26.32 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=31.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039489 257 EVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNS 300 (304)
Q Consensus 257 e~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~ 300 (304)
.|-.|..-=.+.++.+.+|+..|.-.+...+|||..|..++...
T Consensus 13 kI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~~v 56 (64)
T 3t97_C 13 KITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEESV 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444466777778888888888888888888887776554
No 188
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=63.13 E-value=53 Score=26.44 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 274 EIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
+.+..+.+.++-+.+||+.|.....-
T Consensus 72 eY~~L~KkYk~~~~~Ld~eI~~qe~i 97 (119)
T 2avr_X 72 QYQELASKYEDALKKLEAEMEQQKAV 97 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666677777766655443
No 189
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=63.12 E-value=3.7 Score=24.29 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039489 274 EIDRGLKELQDEREGLEQQLQI 295 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~ 295 (304)
+|+.++++|++|...||.++.+
T Consensus 5 kldanvkrlekevgklegevar 26 (28)
T 4dac_A 5 KLDANVKRLEKEVGKLEGEVAR 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT
T ss_pred eccccHHHHHHHHhhhhhhhhh
Confidence 6788888888888888876644
No 190
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=63.08 E-value=15 Score=27.35 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 262 FSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 262 ~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
....+-|++..+++++-|++|++-++.|+..+..+.
T Consensus 38 ~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 73 (99)
T 1q08_A 38 QESKGIVQERLQEVEARIAELQSMQRSLQRLNDACC 73 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566777777777777777777777777666554
No 191
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=62.88 E-value=15 Score=28.94 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 258 VEGLFSTQALLRRREEEIDRGLKELQDEREGLEQ 291 (304)
Q Consensus 258 ~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~ 291 (304)
|+.+.++|.|+.+.+.+|.....+|+++.+..|+
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~ 67 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVEV 67 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 192
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=62.73 E-value=10 Score=24.01 Aligned_cols=25 Identities=16% Similarity=0.221 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 273 EEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 273 ~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
++|++-+++|=.++.+||.++.+|.
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4566666666666666666666654
No 193
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=62.40 E-value=50 Score=25.80 Aligned_cols=50 Identities=20% Similarity=0.160 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 246 DITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQI 295 (304)
Q Consensus 246 el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~ 295 (304)
+|+.-..+.++|...|+....+...+-.+|+..|++|..|...|-+.-+.
T Consensus 41 ~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46667778888888888888888888899999999999999999776654
No 194
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=62.40 E-value=47 Score=25.97 Aligned_cols=72 Identities=18% Similarity=0.308 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhHHH----------------HHHHHHHHH--HHHHHHHHH
Q 039489 228 TEVFKRNAVNKLVEMVHADITGMRKAREV--------EVEGLFS----------------TQALLRRRE--EEIDRGLKE 281 (304)
Q Consensus 228 ~E~~r~s~lsal~dkl~~el~~l~~t~~a--------e~e~l~~----------------~q~eL~~~~--~~l~~~I~~ 281 (304)
.+++.++.+..+.+.+..+++.++...++ ..+.+.- +++.++++. +.++..+.+
T Consensus 18 ~~~L~~~lL~~fl~~~~~~~~~l~~a~~~~d~~~l~~~aHkLkGaa~~~Ga~~L~~~~~~LE~~~r~~~~~~~l~~~~~~ 97 (119)
T 3myf_A 18 KSNLALEMLKMLLDSLPETVEKIQTALGQNDQATMLSTIHKLHGASCYCGVPTTQRLCQEIESALKRQTPVEDLEPEILE 97 (119)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHTTCCGGGGHHHHHH
T ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35677778888888888877777764432 2222221 334444442 356677778
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 039489 282 LQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 282 L~~E~~eLe~~l~~l~~~ 299 (304)
|.+|.+.+++.++....+
T Consensus 98 L~~ei~~v~~~~~~~l~~ 115 (119)
T 3myf_A 98 LLDELTKVESAVKQVLSQ 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 888888888877776654
No 195
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=61.90 E-value=54 Score=25.46 Aligned_cols=52 Identities=12% Similarity=0.173 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 039489 242 MVHADITGMRKAREVEVEGLFSTQALLRR---REEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 242 kl~~el~~l~~t~~ae~e~l~~~q~eL~~---~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
+++.++..+......--..+.+++.+|.+ .+..+++....++.|.++|...|
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433333333333334433333 33355555666666666664443
No 196
>3pwx_A Putative flagellar HOOK-associated protein; structural genomics, structural protein, PSI-2, protein STRU initiative; 2.50A {Vibrio parahaemolyticus}
Probab=61.89 E-value=40 Score=29.75 Aligned_cols=55 Identities=7% Similarity=0.051 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 244 HADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 244 ~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
+..+.+.....++-++.+...+++|=.+++.|+..+..+++...-++..++++++
T Consensus 173 ~~~~~~al~~ld~a~~~v~~~ra~lGa~~nrle~~~~~l~~~~~~l~~~~S~i~D 227 (239)
T 3pwx_A 173 QAEVDASLNAIDDTMANVLGAMTEIGGRHNNLDLMDGAHSENKLFVDKVSGDLSA 227 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence 5667788888888999999999999999999999999999999999988877654
No 197
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=61.77 E-value=12 Score=36.07 Aligned_cols=33 Identities=21% Similarity=0.446 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
++|+++..++++.|+.|+.+..++++.+..+..
T Consensus 71 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 2dq3_A 71 TEIQNRVKELKEEIDRLEEELRKVEEELKNTLL 103 (425)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677778888888888888888888877643
No 198
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=61.71 E-value=45 Score=29.88 Aligned_cols=49 Identities=20% Similarity=0.217 Sum_probs=28.9
Q ss_pred HHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhc
Q 039489 251 RKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQ------DEREGLEQQLQIVLMN 299 (304)
Q Consensus 251 ~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~------~E~~eLe~~l~~l~~~ 299 (304)
.++...-+..++..+ +.+++++++|.+-|.+|+ .+...||++|...+..
T Consensus 89 ~d~yR~~LK~IR~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae 146 (234)
T 3plt_A 89 YDQYRVTLKSIRNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAE 146 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence 334444455555555 556666777777777776 3556666666555443
No 199
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=61.41 E-value=25 Score=26.10 Aligned_cols=37 Identities=14% Similarity=0.081 Sum_probs=13.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 254 REVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 254 ~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
.+..++.|..+=.+..+.-++|++.++.|.++.++++
T Consensus 26 qE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 26 QEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444433333333333344444444554444444
No 200
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=61.26 E-value=42 Score=25.06 Aligned_cols=27 Identities=11% Similarity=0.048 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 039489 242 MVHADITGMRKAREVEVEGLFSTQALL 268 (304)
Q Consensus 242 kl~~el~~l~~t~~ae~e~l~~~q~eL 268 (304)
+.+++++.|-+.-+++-+.+..++++|
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444
No 201
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=61.21 E-value=38 Score=23.50 Aligned_cols=39 Identities=23% Similarity=0.220 Sum_probs=22.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 255 EVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 255 ~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
.+.++.|..--.+|......|...|..|+.|...|...|
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444445666666666666666666666665543
No 202
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=61.04 E-value=65 Score=26.55 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039489 231 FKRNAVNKLVEMVHADITGMRK 252 (304)
Q Consensus 231 ~r~s~lsal~dkl~~el~~l~~ 252 (304)
+|.++-.+-..+||+++..+.+
T Consensus 53 KRn~~HQKEi~~Lrae~~~~QR 74 (167)
T 4gkw_A 53 KRNVAHQKEIGKLRAELGTAQR 74 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666554433
No 203
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=60.97 E-value=22 Score=27.02 Aligned_cols=55 Identities=11% Similarity=0.167 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 241 EMVHADITGMRKAREVEVEGLFSTQALLRRR--EEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 241 dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~--~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
+++++++++|..+..++-..+..+.++|+.. ...+++.|+.|. +=.|+...-+.|
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh-~YNeiKD~gq~L 60 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLH-TYNEIRDIALGM 60 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-HHhHHHHHHHHH
Confidence 4667777777777666666666666666543 445666665553 334444443333
No 204
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=60.88 E-value=30 Score=41.74 Aligned_cols=61 Identities=15% Similarity=0.232 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 232 KRNAVNKLVEMVHADITGMRKAR---EVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQ 292 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t~---~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~ 292 (304)
|+.-+.+..++++..|+.|..+. ++..+.|...|.+|++.+++.++.++++..++++.|+.
T Consensus 1911 K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~ 1974 (3245)
T 3vkg_A 1911 KRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIK 1974 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667776666666554 45555666667888888888888888877766665543
No 205
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=60.67 E-value=14 Score=29.89 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDERE 287 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~ 287 (304)
.++.++.++|++.|.+|+..+.
T Consensus 39 ~qf~~E~~~l~k~I~~lk~~q~ 60 (123)
T 2lf0_A 39 AELEKEKATLEAEIARLREVHS 60 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666667777766665543
No 206
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=60.19 E-value=23 Score=35.41 Aligned_cols=8 Identities=0% Similarity=0.094 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 039489 243 VHADITGM 250 (304)
Q Consensus 243 l~~el~~l 250 (304)
|+.+++++
T Consensus 69 LKnqLEdl 76 (562)
T 3ghg_A 69 LKNSLFEY 76 (562)
T ss_dssp HHHHHTHH
T ss_pred HHHHHHHH
Confidence 33333333
No 207
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=60.13 E-value=43 Score=23.80 Aligned_cols=71 Identities=7% Similarity=-0.038 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 228 TEVFKRNAVNKLVEMVHADITG----MRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 228 ~E~~r~s~lsal~dkl~~el~~----l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
+=....+.++...++++.-+++ +....++....+..+...++.=.+..++.++.+++.-+.+++.++.+..
T Consensus 38 Ei~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 112 (115)
T 3zrx_A 38 EIGILAKSIERLRRSLKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFID 112 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777777777776666 4444444444444444322222222244455555666666665555543
No 208
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=59.59 E-value=20 Score=25.11 Aligned_cols=11 Identities=27% Similarity=0.604 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 039489 283 QDEREGLEQQL 293 (304)
Q Consensus 283 ~~E~~eLe~~l 293 (304)
++|...||..|
T Consensus 54 eeevkkleeei 64 (67)
T 1lq7_A 54 EEEVKKLEEEI 64 (67)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 209
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=59.48 E-value=55 Score=32.19 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 039489 279 LKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 279 I~~L~~E~~eLe~~l~~l~~~ 299 (304)
|+.|+.-.+.+-..|++|+..
T Consensus 134 IrvLq~~l~~q~skIQRLE~d 154 (491)
T 1m1j_A 134 IKALQNSIQEQVVEMKRLEVD 154 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 210
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=59.42 E-value=45 Score=25.06 Aligned_cols=50 Identities=8% Similarity=0.025 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 246 DITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQI 295 (304)
Q Consensus 246 el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~ 295 (304)
|+..|+-..++.-..-.+-+-.|+.-++++-..=+.|+.+.+|++..-..
T Consensus 27 Ei~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 27 ELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444433333322223333445555444444444444444444443333
No 211
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=58.87 E-value=34 Score=34.46 Aligned_cols=43 Identities=12% Similarity=0.220 Sum_probs=18.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 039489 254 REVEVEGLFSTQALLRRREEEIDRGL----KELQDEREGLEQQLQIV 296 (304)
Q Consensus 254 ~~ae~e~l~~~q~eL~~~~~~l~~~I----~~L~~E~~eLe~~l~~l 296 (304)
.+.+.+.+.++|+.++..+...++.| ++|++|++.+-++.+++
T Consensus 503 ~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~ 549 (592)
T 1f5n_A 503 AKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERT 549 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444333333 33444444444444433
No 212
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=58.78 E-value=94 Score=27.29 Aligned_cols=39 Identities=10% Similarity=0.086 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 039489 237 NKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEI 275 (304)
Q Consensus 237 sal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l 275 (304)
+.+.+.|..-.++....+....+...+++.+|..-..++
T Consensus 94 ~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l 132 (301)
T 2efk_A 94 VRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQL 132 (301)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443333333333333344444444443333333
No 213
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=58.67 E-value=58 Score=24.74 Aligned_cols=31 Identities=26% Similarity=0.172 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 268 LRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 268 L~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
.++..+.++..++...++.++|...|+.|..
T Consensus 54 ~kk~~~~V~~eL~~sn~kl~~L~~eL~eL~a 84 (86)
T 1cxz_B 54 LGRSLGPVELLLRGSSRRLDLLHQQLQELHA 84 (86)
T ss_dssp HTCCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4445567777777777777777777777654
No 214
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=58.66 E-value=77 Score=27.45 Aligned_cols=48 Identities=6% Similarity=0.040 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 239 LVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDER 286 (304)
Q Consensus 239 l~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~ 286 (304)
++.+|..|...|..+.+..-+.+.+++.+|..-+++....=..+.++.
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~ 68 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQA 68 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 445555555555555555555555555555555555443333333333
No 215
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=58.60 E-value=36 Score=22.41 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=20.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 253 AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 253 t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
+.+.|..+|..-.+-|++..-.-++.|.-|++|.+.|.+.|
T Consensus 7 qlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 7 QLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444455444444555555665555555444
No 216
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=58.54 E-value=95 Score=27.20 Aligned_cols=18 Identities=6% Similarity=-0.014 Sum_probs=7.2
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 039489 259 EGLFSTQALLRRREEEID 276 (304)
Q Consensus 259 e~l~~~q~eL~~~~~~l~ 276 (304)
+...+++.+|.+-..+++
T Consensus 123 ~~~~k~~k~~~~~~~~l~ 140 (305)
T 2efl_A 123 HDGRKAQQHIETCWKQLE 140 (305)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444333333
No 217
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=58.52 E-value=44 Score=25.46 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
.||.+.+++.+..+..++++.++|...|+.....
T Consensus 64 del~~~~~~~~~~~~~~~~~i~~L~~~le~aL~~ 97 (104)
T 1t3u_A 64 HDLLHRKERLDQESSSTRERVRELLDRVDRALAN 97 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555556666666777788888887777766543
No 218
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=57.89 E-value=30 Score=22.88 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 267 LLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 267 eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
+|+.+..+++....+|+.+..-|+.+-++|+
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4555555555555555555555555444443
No 219
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=57.68 E-value=53 Score=24.00 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 247 ITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 247 l~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
++++....+++.|++....+.|+.|-++|..==++-++|++=|+....
T Consensus 10 ~q~ll~EN~~LreAlkqsNq~mkeR~eeL~~wqekQkeErefl~~kf~ 57 (70)
T 3brv_B 10 LQRCLEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQ 57 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 455677788888888888888888888776666666666555554444
No 220
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=57.54 E-value=51 Score=24.17 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 039489 243 VHADITGMRKAREVEVEGLFSTQALLRRR 271 (304)
Q Consensus 243 l~~el~~l~~t~~ae~e~l~~~q~eL~~~ 271 (304)
|+.+++.+....++..+.+.+.|+++.+-
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ee~~~~ 32 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAEEEYKLE 32 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555566666666555543
No 221
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=57.38 E-value=58 Score=29.74 Aligned_cols=50 Identities=8% Similarity=0.124 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 249 GMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 249 ~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
+...-.+..+..+..-=..++++-.++++.|+++-.+...||++++++..
T Consensus 209 ~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 258 (268)
T 2yo3_A 209 EANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKK 258 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334444444434566666677777777777788888888877654
No 222
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=56.79 E-value=11 Score=30.15 Aligned_cols=24 Identities=17% Similarity=0.265 Sum_probs=20.3
Q ss_pred cceeEEEeecccCCCCCCeEEEec
Q 039489 88 YNIPVIIWLMESYPRHPPCVYVNP 111 (304)
Q Consensus 88 ynIPi~Iwlp~~YP~~pPivyV~p 111 (304)
..|=+.|.+|.+||..+|.+.|..
T Consensus 62 ~~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 62 SSITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp CEEEEEEECCSSTTSSCCEEEEEC
T ss_pred eEEEEEEECCCCCCCCCCeEEEec
Confidence 356678899999999999999964
No 223
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=56.71 E-value=87 Score=26.21 Aligned_cols=15 Identities=27% Similarity=0.138 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhHH
Q 039489 248 TGMRKAREVEVEGLF 262 (304)
Q Consensus 248 ~~l~~t~~ae~e~l~ 262 (304)
+..+.+.+.|+|.|.
T Consensus 78 E~~~~~ie~ElEeLT 92 (154)
T 2ocy_A 78 EEEADKLNKEVEDLT 92 (154)
T ss_dssp HTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444443
No 224
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=56.70 E-value=8 Score=26.24 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 264 TQALLRRREEEIDRGLKELQDEREGLEQQ 292 (304)
Q Consensus 264 ~q~eL~~~~~~l~~~I~~L~~E~~eLe~~ 292 (304)
+-++|+.....|++.|..|++..+.||+.
T Consensus 25 ivarlendnanlekdianlekdianlerd 53 (56)
T 3he4_A 25 IVARLENDNANLEKDIANLEKDIANLERD 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 34555555556666666666666555554
No 225
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=56.63 E-value=54 Score=24.31 Aligned_cols=64 Identities=5% Similarity=-0.080 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEGL-------FSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~l-------~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
..+.+-.+.-+..++.+..+.+.+++.- ..++..|..=....++....+.+.+..|+.++..+.
T Consensus 46 ~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~Le~aL~~~Q 116 (119)
T 3uun_A 46 EGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNLHRVLMDLQ 116 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556777888888888777532 234455555555556666666667777777766543
No 226
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=56.52 E-value=76 Score=25.47 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039489 272 EEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 272 ~~~l~~~I~~L~~E~~eLe~~l 293 (304)
-.++++.+..|+++.++.++-|
T Consensus 77 ~k~Y~~~~keLd~~ik~qekiI 98 (119)
T 3etw_A 77 ASKYEDALKKLEAEMEQQKAVI 98 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 227
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=56.46 E-value=60 Score=31.89 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039489 274 EIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~ 294 (304)
.|+.+|+.+.-|.+.||..|.
T Consensus 136 vLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 136 ALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555553
No 228
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=56.34 E-value=36 Score=24.98 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhhc
Q 039489 287 EGLEQQLQIVLMN 299 (304)
Q Consensus 287 ~eLe~~l~~l~~~ 299 (304)
..|-+.|..++=+
T Consensus 54 ~~l~~~I~~ILYa 66 (75)
T 3mtu_A 54 DPVLQRIVDILYA 66 (75)
T ss_dssp CHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 3444555444433
No 229
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=56.18 E-value=18 Score=25.39 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
.+|..+.+.|..-|..|+.|...|.
T Consensus 32 ~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 32 KTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555544443
No 230
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=56.16 E-value=20 Score=26.90 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 039489 278 GLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 278 ~I~~L~~E~~eLe~~l~~l~ 297 (304)
.|..|++|..+|++.+...-
T Consensus 53 ~V~~lq~Ki~elkrqlAd~v 72 (78)
T 2ic6_A 53 AVSALETKLGELKRELADLI 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45668888888888887653
No 231
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=56.07 E-value=57 Score=27.96 Aligned_cols=13 Identities=23% Similarity=0.204 Sum_probs=9.4
Q ss_pred CHHHHHHHHHHHh
Q 039489 144 NLVDLVRELSACF 156 (304)
Q Consensus 144 ~L~~Lv~~l~~~F 156 (304)
..-..|++|..+|
T Consensus 65 e~e~Yv~el~kAl 77 (175)
T 3mud_A 65 EKGKYVGELRKAL 77 (175)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 4456788888887
No 232
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=55.60 E-value=57 Score=23.71 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 248 TGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQI 295 (304)
Q Consensus 248 ~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~ 295 (304)
.+.+...++-|..|..--.+|+...+.+......|+++...|...+..
T Consensus 21 RafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 21 RAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666654444566655555555555555555555555543
No 233
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=55.43 E-value=48 Score=24.49 Aligned_cols=22 Identities=5% Similarity=0.193 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039489 275 IDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 275 l~~~I~~L~~E~~eLe~~l~~l 296 (304)
|+....+|+.|++.|.++.+.|
T Consensus 52 L~~~~~~l~~e~~~L~~e~~~L 73 (80)
T 1nlw_A 52 LEDSDRKAVHQIDQLQREQRHL 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444333
No 234
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=55.16 E-value=57 Score=24.70 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
.+|+++.+.|..-|+.|+.|...|...+.
T Consensus 46 ~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 46 LELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777777765554
No 235
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=55.13 E-value=1.3e+02 Score=27.81 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhHHH---------------HHHHHHHHHHHHHHHHHHHHHH
Q 039489 227 QTEVFKRNAVNKLVEMVHADITGMRKAREV------EVEGLFS---------------TQALLRRREEEIDRGLKELQDE 285 (304)
Q Consensus 227 a~E~~r~s~lsal~dkl~~el~~l~~t~~a------e~e~l~~---------------~q~eL~~~~~~l~~~I~~L~~E 285 (304)
++..-+|+.+....++++.+++.+..+.-+ -++.|.. .|..|.++ .+++..-..+..+
T Consensus 13 ~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le~E-re~~~~Rd~~a~~ 91 (302)
T 3ibp_A 13 SNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLERE-REAIVERDEVGAR 91 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 344457888888889999988888774332 2222222 12333333 3444445577777
Q ss_pred HHHHHHHHHHHhh
Q 039489 286 REGLEQQLQIVLM 298 (304)
Q Consensus 286 ~~eLe~~l~~l~~ 298 (304)
++.|++.|+.|..
T Consensus 92 k~~Le~~ierLs~ 104 (302)
T 3ibp_A 92 KNAVDEEIERLSQ 104 (302)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcC
Confidence 8888888888765
No 236
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=55.13 E-value=64 Score=24.18 Aligned_cols=48 Identities=17% Similarity=0.190 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 246 DITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 246 el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
+++....+..+++..|+.--++...+.+.|.+.-..|+.+..+|+.++
T Consensus 39 ele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 39 ELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333344444443333334445555555555666667766666655
No 237
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=54.93 E-value=63 Score=24.02 Aligned_cols=64 Identities=9% Similarity=0.031 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEG-------LFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~-------l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
..+.+-.+.-+..++.+..+.+.+++. ...++..|..=....++....+.+.+..|+.++..+.
T Consensus 46 ~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~~aL~~~Q 116 (118)
T 3uul_A 46 ETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRLHDALMELQ 116 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555666677888888888888763 2235555555555666666677777777777776554
No 238
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=54.79 E-value=8 Score=31.99 Aligned_cols=14 Identities=7% Similarity=0.204 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 039489 274 EIDRGLKELQDERE 287 (304)
Q Consensus 274 ~l~~~I~~L~~E~~ 287 (304)
++++.+++|+.+..
T Consensus 43 ~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 43 DQRKEIERLKSVIA 56 (171)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 239
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=54.13 E-value=74 Score=27.60 Aligned_cols=25 Identities=8% Similarity=0.020 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Q 039489 238 KLVEMVHADITGMRKAREVEVEGLF 262 (304)
Q Consensus 238 al~dkl~~el~~l~~t~~ae~e~l~ 262 (304)
+..|+.+++..+.+...+..+..+.
T Consensus 132 ~~~D~~~~e~~e~kn~le~~i~~~~ 156 (227)
T 1u00_A 132 AEQDVKARMLAEQKVEAARVLESLH 156 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666555544
No 240
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=53.95 E-value=82 Score=27.54 Aligned_cols=24 Identities=13% Similarity=0.014 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Q 039489 242 MVHADITGMRKAREVEVEGLFSTQ 265 (304)
Q Consensus 242 kl~~el~~l~~t~~ae~e~l~~~q 265 (304)
++.++.+.+..+.++-+.+...++
T Consensus 150 ~l~~~~~~l~~qlE~~v~~K~~~E 173 (213)
T 1ik9_A 150 RLLRDWNDVQGRFEKAVSAKEALE 173 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 241
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=53.70 E-value=80 Score=25.23 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHH
Q 039489 240 VEMVHADITGMRKAREVEVEGLFSTQ----ALLRRREEEIDRGLKELQ 283 (304)
Q Consensus 240 ~dkl~~el~~l~~t~~ae~e~l~~~q----~eL~~~~~~l~~~I~~L~ 283 (304)
.+||+.+.+.+.+..++- ..+++ .|+.+=+.+.+..+.+++
T Consensus 41 LeRLr~~~d~~~K~HE~k---klqLkse~e~E~ae~k~KYD~~lqe~e 85 (115)
T 3vem_A 41 LEKLRRESENSKKTFEEK---KSILKAELERKMAEVQAEFRRKFHEVE 85 (115)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666665555555443 22233 344444444445555544
No 242
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=53.55 E-value=63 Score=23.67 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 039489 245 ADITGMRKAREVEVEGLFSTQALLRR 270 (304)
Q Consensus 245 ~el~~l~~t~~ae~e~l~~~q~eL~~ 270 (304)
.+++.+....++..+.+.+.|+++.+
T Consensus 4 k~v~~l~~E~eel~~klk~~~ee~~~ 29 (71)
T 1uix_A 4 SDVANLANEKEELNNKLKEAQEQLSR 29 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555544443
No 243
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=53.50 E-value=42 Score=23.48 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=23.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 254 REVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 254 ~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
.+..+..|+.....|...-++|+....++++|.+.|.+.+
T Consensus 9 se~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 9 SERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666666666666666665544
No 244
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=53.47 E-value=22 Score=27.34 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 272 EEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 272 ~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
..++++++++|++-.++|++.|..++.+
T Consensus 38 ~~El~~~l~el~e~l~DL~~SI~i~e~~ 65 (95)
T 2c5k_T 38 EEEIQDILKDVEETIVDLDRSIIVMKRD 65 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566666666666666666666665543
No 245
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=53.30 E-value=50 Score=22.42 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=21.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 258 VEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 258 ~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
+..|+.....|..+-.+|+....++++|.+.|.+-|
T Consensus 6 l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LL 41 (48)
T 3vmx_A 6 ILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLL 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 444555556666666666666666666666555443
No 246
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=53.16 E-value=35 Score=31.96 Aligned_cols=19 Identities=16% Similarity=0.114 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039489 275 IDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 275 l~~~I~~L~~E~~eLe~~l 293 (304)
+++.|.+|+.+..+|+..+
T Consensus 38 ~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 38 NQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444555555554443
No 247
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=53.01 E-value=1.7 Score=41.47 Aligned_cols=48 Identities=23% Similarity=0.419 Sum_probs=4.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 243 VHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 243 l~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
...+.+++.++.+++..+...++++|.+.+++++.-|++++.|.++|+
T Consensus 338 ~~~~~~e~~kklee~~~~r~e~~~~~~~~e~~~~~~~~~~~~~~~~~~ 385 (386)
T 2bnx_A 338 SEAKATELEKKLDSELTARHELQVEMKKMENDFEQKLQDLQGEKDALD 385 (386)
T ss_dssp HHTTTCC-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444567778888888888888999999988888888888888877764
No 248
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=52.92 E-value=23 Score=22.38 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 273 EEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 273 ~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
++|++-+++|-.|+.+|+.++.+|
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl 27 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARV 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345555555555555555555544
No 249
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=52.74 E-value=51 Score=22.96 Aligned_cols=22 Identities=14% Similarity=0.370 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039489 275 IDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 275 l~~~I~~L~~E~~eLe~~l~~l 296 (304)
|+.-++.|+.+.++|...|..|
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L 48 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANML 48 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443
No 250
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=52.48 E-value=53 Score=22.47 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 039489 242 MVHADITGMRKAREVEVEGLFSTQALLRRREEEIDR 277 (304)
Q Consensus 242 kl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~ 277 (304)
.+++++..+..+.+.+.+.|.+..++|.+=+++|++
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777777777777777777776665555554
No 251
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=52.46 E-value=1.4e+02 Score=29.42 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 274 EIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
+.+.-+...++++++.++.+..++.
T Consensus 84 eY~~kl~aYe~~~~~~~k~lae~ek 108 (497)
T 3iox_A 84 DYPVKLKAYEDEQTSIKAALAELEK 108 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444455555566666666665544
No 252
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=52.40 E-value=28 Score=24.85 Aligned_cols=34 Identities=32% Similarity=0.483 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
.+|+++...+.+-+++-++.+.+||+.+-++..+
T Consensus 17 ~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~ 50 (61)
T 3l4f_A 17 QELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555556666666666666777766666443
No 253
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=52.32 E-value=71 Score=23.90 Aligned_cols=58 Identities=7% Similarity=0.126 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 232 KRNAVNKLVEMVHADITGMRKA---REVEVEGLFSTQALLRRREEEIDRGLKELQDEREGL 289 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t---~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eL 289 (304)
....|.+..+.|+..++.|... .-+--+.-...+.+.++.-++++..|..|.+....-
T Consensus 26 ~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~l~~a 86 (103)
T 4i0x_B 26 FKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEEAARTA 86 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777888888888877 555556666667777777777777777777665543
No 254
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=52.18 E-value=72 Score=23.87 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q 039489 241 EMVHADITGMRKAREVEVEGLFSTQ 265 (304)
Q Consensus 241 dkl~~el~~l~~t~~ae~e~l~~~q 265 (304)
|.++..++.++...++|+..-...+
T Consensus 24 dn~~~~~edfk~KyE~E~~~R~~~E 48 (86)
T 3swk_A 24 DNLAEDIMRLREKLQEEMLQREEAE 48 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555444444
No 255
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=52.15 E-value=15 Score=34.35 Aligned_cols=19 Identities=5% Similarity=0.198 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039489 272 EEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 272 ~~~l~~~I~~L~~E~~eLe 290 (304)
-++|++-|..|+.+..+++
T Consensus 37 le~L~~KI~~LE~~v~~q~ 55 (323)
T 1lwu_B 37 LEHLRAKMQRMEEAIKTQK 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444455544444443
No 256
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=52.06 E-value=26 Score=24.09 Aligned_cols=21 Identities=29% Similarity=0.216 Sum_probs=7.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 039489 257 EVEGLFSTQALLRRREEEIDR 277 (304)
Q Consensus 257 e~e~l~~~q~eL~~~~~~l~~ 277 (304)
++|+|..--++|+++-+.|.+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~ 40 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVE 40 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 257
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=51.89 E-value=28 Score=27.89 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 262 FSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 262 ~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
....+-|++..+++++.|++|++.++.|+..+...
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~ 112 (135)
T 1q06_A 78 ADVKRRTLEKVAEIERHIEELQSMRDQLLALANAC 112 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666777777777777777777776665433
No 258
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=51.70 E-value=75 Score=23.99 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=24.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 255 EVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQ 291 (304)
Q Consensus 255 ~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~ 291 (304)
.+..|.+.++|.|-+...+.|+-+++.|+.-.+.|++
T Consensus 46 ~~qGeqIkeLq~eqkaQg~tl~lil~tL~~~nkRLDk 82 (85)
T 2ba2_A 46 DAQGEQIKELQVEQKAQGKTLQLILEALQGINKRLDN 82 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455556666766677777777777777766655543
No 259
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=51.50 E-value=53 Score=31.86 Aligned_cols=69 Identities=19% Similarity=0.180 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhh
Q 039489 230 VFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQD------EREGLEQQLQIVLM 298 (304)
Q Consensus 230 ~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~------E~~eLe~~l~~l~~ 298 (304)
..++..|+........+........++..+.+.++. .+..++.+.++..+.++.+ |.++|++.+..|..
T Consensus 164 ~~rr~~LD~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~ql~ei~~~~l~~~E~e~L~~~~~~L~~ 241 (517)
T 4ad8_A 164 ANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASQRERARQIDLLAFQVQEISEVSPDPGEEEGLNTELSRLSN 241 (517)
T ss_dssp HHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 345556655444333333333333333333333322 2233344455566666666 66777777666654
No 260
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=51.17 E-value=60 Score=25.96 Aligned_cols=7 Identities=14% Similarity=0.064 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 039489 279 LKELQDE 285 (304)
Q Consensus 279 I~~L~~E 285 (304)
|+.++.+
T Consensus 55 L~~~~~~ 61 (157)
T 2fup_A 55 LERNGRA 61 (157)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 261
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=50.89 E-value=1.1e+02 Score=29.24 Aligned_cols=66 Identities=11% Similarity=0.190 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHh
Q 039489 232 KRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRG------------LKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~------------I~~L~~E~~eLe~~l~~l~ 297 (304)
++..|..-+..+...|+.++.....+|+..-.-=..|-++=++|++. -..|.|+++.|-++|..+.
T Consensus 72 ~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~~~~~~g~~~ndLlDqRD~ll~eLS~~v 149 (463)
T 2d4y_A 72 KAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLDQRDQLVSELNKIV 149 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHhHHHHHHHHHHHHhhc
Confidence 34444444444555555555555555544333223333333333333 3468888888888888764
No 262
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=50.65 E-value=24 Score=27.13 Aligned_cols=33 Identities=12% Similarity=0.293 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 039489 264 TQALLRRREEEIDRGLKE---LQDEREGLEQQLQIV 296 (304)
Q Consensus 264 ~q~eL~~~~~~l~~~I~~---L~~E~~eLe~~l~~l 296 (304)
++++|.+-+.++.+.+++ |=+-|-.||..|..+
T Consensus 49 lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatY 84 (95)
T 3mov_A 49 KEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAY 84 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443322 334445566555544
No 263
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=50.53 E-value=74 Score=31.37 Aligned_cols=26 Identities=8% Similarity=-0.020 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 274 EIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
+|...++.|+++.++||..+..++++
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~ 145 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQ 145 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677777777777777766554
No 264
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=50.05 E-value=29 Score=21.23 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=8.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 039489 257 EVEGLFSTQALLRRREEEIDR 277 (304)
Q Consensus 257 e~e~l~~~q~eL~~~~~~l~~ 277 (304)
++..|..+-++|.+|-+.|++
T Consensus 7 ~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 7 DVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444433
No 265
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=50.05 E-value=1.3e+02 Score=26.11 Aligned_cols=28 Identities=7% Similarity=0.052 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039489 237 NKLVEMVHADITGMRKAREVEVEGLFST 264 (304)
Q Consensus 237 sal~dkl~~el~~l~~t~~ae~e~l~~~ 264 (304)
-+..|+.+++..+.+...+..+....+.
T Consensus 134 ~~~eD~~~r~~~e~kn~le~~i~~~~~~ 161 (219)
T 4e81_A 134 NAEADRKFEELVQTRNQGDHLLHSTRKQ 161 (219)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777666666666666555443
No 266
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=49.59 E-value=83 Score=23.86 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039489 275 IDRGLKELQDEREGLEQQLQI 295 (304)
Q Consensus 275 l~~~I~~L~~E~~eLe~~l~~ 295 (304)
|.+.|..+..++..|+-++..
T Consensus 61 Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 61 LRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433
No 267
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=49.53 E-value=37 Score=25.09 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDERE 287 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~ 287 (304)
++|+++.++|++.++.|+...+
T Consensus 49 ~~l~~~i~~L~~~~~~L~~~~~ 70 (99)
T 1q08_A 49 QEVEARIAELQSMQRSLQRLND 70 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 268
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=49.47 E-value=58 Score=21.99 Aligned_cols=28 Identities=11% Similarity=0.312 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 272 EEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 272 ~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
..+|+.++.+|+...+.||+.|..|+..
T Consensus 19 naklenivarlendnanlekdianlekd 46 (56)
T 3he4_A 19 NAKLENIVARLENDNANLEKDIANLEKD 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchHHHHHHHHHHH
Confidence 4466666666666666666666665543
No 269
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=49.23 E-value=1e+02 Score=24.81 Aligned_cols=11 Identities=18% Similarity=0.253 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 039489 266 ALLRRREEEID 276 (304)
Q Consensus 266 ~eL~~~~~~l~ 276 (304)
+||.+|+.-+.
T Consensus 105 ~Ei~~Rr~fV~ 115 (130)
T 4dnd_A 105 GDLQERKVFVE 115 (130)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555433
No 270
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=49.01 E-value=9 Score=23.11 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 039489 275 IDRGLKELQDERE 287 (304)
Q Consensus 275 l~~~I~~L~~E~~ 287 (304)
|+..++.|+++.+
T Consensus 13 lesklqalekkle 25 (31)
T 3ljm_A 13 LESKLQALEKKLE 25 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 271
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=49.00 E-value=74 Score=27.42 Aligned_cols=60 Identities=12% Similarity=0.070 Sum_probs=34.2
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 234 NAVNKLVEMV--HADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 234 s~lsal~dkl--~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
.++.+.+.++ -.++.+.+......++.+..++..|...+.+++..+..++.=..+.....
T Consensus 52 dlL~~~v~~l~~~q~~~~~~e~l~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~ 113 (192)
T 2p22_C 52 HQLELYVTKFNPLTDFAGKIHAFRDQFKQLEENFEDLHEQKDKVQALLENARILESKYVASW 113 (192)
T ss_dssp HHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554443 22333333333555556667777788777777777766666555554444
No 272
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=48.38 E-value=1.1e+02 Score=25.09 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Q 039489 246 DITGMRKAREVEVEGLFSTQALLRRREEEIDRG---LKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 246 el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~---I~~L~~E~~eLe~~l~~l~~ 298 (304)
+|++.-...+.+-+++-.+..||+.++-++.+. .++|+-|.+.+.++|+.++.
T Consensus 106 DLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR~ 161 (167)
T 4gkw_A 106 DLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYRA 161 (167)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHH
Confidence 333333344444444444445555555444433 35666666777777766543
No 273
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=48.22 E-value=1.2e+02 Score=25.18 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRR---EEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~---~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
..+.+-..+|.+|++.-+.-.+.+.+.....++.|.+- -++.++-++++..-+.+|+.-++.|
T Consensus 82 ~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 82 LLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 56677777888888777776666666666666555444 4455666677777888888777654
No 274
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=47.88 E-value=55 Score=24.97 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039489 274 EIDRGLKELQDEREGLEQQLQI 295 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~ 295 (304)
.++..|..|+.+.+++++.+..
T Consensus 75 ~l~~~i~~l~~~i~~l~~~~~~ 96 (112)
T 1l8d_A 75 NSKNTLAKLIDRKSELERELRR 96 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444433333
No 275
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=47.81 E-value=40 Score=27.75 Aligned_cols=21 Identities=10% Similarity=0.072 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039489 276 DRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 276 ~~~I~~L~~E~~eLe~~l~~l 296 (304)
++||..-+.+...+|+.+..|
T Consensus 88 N~MVa~ar~~~~~~e~r~~~L 108 (135)
T 2e7s_A 88 NNLVADARMEKYAIEILNKRL 108 (135)
T ss_dssp HHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 276
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=47.64 E-value=73 Score=22.63 Aligned_cols=70 Identities=6% Similarity=-0.064 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 228 TEVFKRNAVNKLVEMVHADITGMRK----AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 228 ~E~~r~s~lsal~dkl~~el~~l~~----t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
+=......++...++++...++... ..++...-+..+..-++.-.++.+..++.+.++.++|+..++.+.
T Consensus 38 Ei~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~~~~~~~~~i~~~~~~l~~~i~~ll 111 (114)
T 3zcc_A 38 EIGILAKSIERLRRSLKQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFI 111 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666667666666665555333 223333333333321111111223334666666666666666654
No 277
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=47.51 E-value=1.6e+02 Score=27.29 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhc
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQD-------EREGLEQQLQIVLMN 299 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~-------E~~eLe~~l~~l~~~ 299 (304)
+.+..+.|+..+.......+..++.|..-+..|...+..++.....|.. ..+.|+++|+.+...
T Consensus 121 l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~ 191 (346)
T 2nrj_A 121 LKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGS 191 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 4444577777777777778888888877777766555544444433332 234555555555443
No 278
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=47.49 E-value=56 Score=24.64 Aligned_cols=11 Identities=9% Similarity=0.181 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 039489 242 MVHADITGMRK 252 (304)
Q Consensus 242 kl~~el~~l~~ 252 (304)
+++.++++...
T Consensus 9 ~vq~ev~evk~ 19 (91)
T 3hd7_A 9 QTQAQVDEVVD 19 (91)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 279
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=47.38 E-value=1.2e+02 Score=29.18 Aligned_cols=24 Identities=8% Similarity=0.030 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEV 258 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~ 258 (304)
.-|+++++ +-.+++.+..+.+.++
T Consensus 38 ~~l~~LE~-~l~elsn~ts~v~~Lv 61 (409)
T 1m1j_C 38 GELLEIEG-LLQQATNSTGSIEYLI 61 (409)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 44444422 2224444444444443
No 280
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=47.31 E-value=60 Score=28.40 Aligned_cols=30 Identities=13% Similarity=0.227 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039489 271 REEEIDRGLKELQDEREGLEQQLQIVLMNS 300 (304)
Q Consensus 271 ~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~ 300 (304)
+-++|++.+++|+.|...|...+.+|+.++
T Consensus 45 ~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~ 74 (206)
T 3oa7_A 45 EYNDLTKSHNTLSKELDNLRSRFGNLEGNT 74 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHccCCH
Confidence 344666666677777777777777776554
No 281
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=47.19 E-value=19 Score=28.26 Aligned_cols=31 Identities=13% Similarity=0.085 Sum_probs=13.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 253 AREVEVEGLFSTQALLRRREEEIDRGLKELQ 283 (304)
Q Consensus 253 t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~ 283 (304)
..++|++.|.+.+++|.+.-..++..|+.|.
T Consensus 10 ~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 10 GLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444443
No 282
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=47.01 E-value=24 Score=31.65 Aligned_cols=41 Identities=5% Similarity=0.041 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhHHHHHHHHHH
Q 039489 230 VFKRNAVNKLVEMVHA------DITGMRKAREVEVEGLFSTQALLRR 270 (304)
Q Consensus 230 ~~r~s~lsal~dkl~~------el~~l~~t~~ae~e~l~~~q~eL~~ 270 (304)
..-++.|+++.+=++- ..+++.+..++.++.+.++++|+++
T Consensus 120 ~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~ 166 (250)
T 2ve7_C 120 KRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQE 166 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777765553 2334444555555555555555433
No 283
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=47.00 E-value=63 Score=24.40 Aligned_cols=6 Identities=33% Similarity=0.612 Sum_probs=2.3
Q ss_pred HHHHHH
Q 039489 232 KRNAVN 237 (304)
Q Consensus 232 r~s~ls 237 (304)
||.+|.
T Consensus 29 Rr~AL~ 34 (83)
T 1wlq_A 29 RRKALY 34 (83)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 284
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=46.82 E-value=1.3e+02 Score=25.43 Aligned_cols=13 Identities=8% Similarity=0.026 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 039489 245 ADITGMRKAREVE 257 (304)
Q Consensus 245 ~el~~l~~t~~ae 257 (304)
.++.+++.+.+++
T Consensus 92 ~ql~akr~EL~aL 104 (175)
T 3lay_A 92 QQLISKRYEYNAL 104 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 285
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=46.66 E-value=94 Score=23.91 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDER 286 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~ 286 (304)
+.|++.-+++.+.|+.+..+.
T Consensus 52 aKL~Rk~DKl~~ele~l~~~l 72 (93)
T 3sjb_C 52 TKNNRKLDSLDKEINNLKDEI 72 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444443333
No 286
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=46.57 E-value=72 Score=22.25 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 247 ITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 247 l~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
++.+......+++.+...-+.++++...-.+.|..|+.+...|+..|
T Consensus 17 ~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~~~l 63 (66)
T 3m0a_A 17 FENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLERSI 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHH
Confidence 33333444444444444445555666666888888999888888765
No 287
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=46.33 E-value=40 Score=28.39 Aligned_cols=52 Identities=8% Similarity=0.081 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 244 HADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 244 ~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
|.++..+.... +|...++.-- .++++-.+++++.+++++++.++|++.+..+
T Consensus 140 Qg~~~~~l~~~-~er~~~l~~i~g~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 194 (203)
T 3qks_A 140 QGQIDAILESD-EAREKVVREVLNLDKFETAYKKLSELKKTINNRIKEYRDILART 194 (203)
T ss_dssp TTHHHHHHHCH-HHHHHHHHHHTCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHhCc-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55666665544 4433333322 5556666677777777777777777766554
No 288
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=45.96 E-value=68 Score=23.42 Aligned_cols=28 Identities=7% Similarity=0.145 Sum_probs=15.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 257 EVEGLFSTQALLRRREEEIDRGLKELQD 284 (304)
Q Consensus 257 e~e~l~~~q~eL~~~~~~l~~~I~~L~~ 284 (304)
.|+++++.-+-|+.+.+.+...++.|++
T Consensus 3 ~m~aiKkkmqaLk~Ekdna~e~~e~lE~ 30 (75)
T 3mtu_A 3 SMDAIKKKMQMLKLDKENALDRAEQAEA 30 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455544445566666666666666666
No 289
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=45.81 E-value=84 Score=31.61 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHhhc
Q 039489 284 DEREGLEQQLQIVLMN 299 (304)
Q Consensus 284 ~E~~eLe~~l~~l~~~ 299 (304)
.|-+.|+++|+.|..+
T Consensus 567 ~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 567 KESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444555555555443
No 290
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=45.43 E-value=40 Score=31.21 Aligned_cols=20 Identities=20% Similarity=0.322 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039489 268 LRRREEEIDRGLKELQDERE 287 (304)
Q Consensus 268 L~~~~~~l~~~I~~L~~E~~ 287 (304)
|.++.+++.+.|+.|+++.+
T Consensus 248 l~~~~~e~~~~V~~LE~~~D 267 (319)
T 2p90_A 248 QTEESSEIQRVVGALEQQYD 267 (319)
T ss_dssp HHHHCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHhhhh
Confidence 33333444455555554443
No 291
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=45.41 E-value=36 Score=21.52 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039489 274 EIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l 293 (304)
....-|++|+++..-||.+|
T Consensus 11 a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHH
Confidence 34444444555555555444
No 292
>1t98_A KICB protein, chromosome partition protein MUKF; winged helix, helix-turn helix, domain swapped, condensin; 2.90A {Escherichia coli} SCOP: a.4.5.65 a.47.6.1
Probab=45.38 E-value=1.4e+02 Score=27.10 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Q 039489 232 KRNAVNKLVEMVHADITGMRKA--------REVEV----EGLFSTQALLRRREEEIDRGLKELQDER------EGLEQQL 293 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t--------~~ae~----e~l~~~q~eL~~~~~~l~~~I~~L~~E~------~eLe~~l 293 (304)
..+.|++--..++.++.+|..+ +|.++ .+|+.+|.-|..-..++...|-++++-. +-+|+.+
T Consensus 174 ~QR~mDeQQ~~Vk~~IA~LL~qDW~~AI~~CE~LL~eTs~tLRELqDtL~aagd~lqa~Ll~IQ~~~~~~~~l~~vd~l~ 253 (287)
T 1t98_A 174 TQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLV 253 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 5566777777777777766652 23222 3455566666666666666665555432 2334455
Q ss_pred HHHhhccc
Q 039489 294 QIVLMNSD 301 (304)
Q Consensus 294 ~~l~~~~~ 301 (304)
..|.++-|
T Consensus 254 ~~Lq~klD 261 (287)
T 1t98_A 254 FDLQSKLD 261 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544433
No 293
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=45.32 E-value=38 Score=19.78 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039489 269 RRREEEIDRGLKELQDEREG 288 (304)
Q Consensus 269 ~~~~~~l~~~I~~L~~E~~e 288 (304)
+.+-.+|+..++.|++|.+.
T Consensus 6 kdevgelkgevralkdevkd 25 (27)
T 3v86_A 6 KDEVGELKGEVRALKDEVKD 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHhc
Confidence 33333444444444444443
No 294
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=45.29 E-value=98 Score=23.45 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=16.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 255 EVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 255 ~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
+++|+.|++.=..+...+.+++-.|..|+++.+++.
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443
No 295
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=45.24 E-value=79 Score=31.16 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 274 EIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
++...++.|+++.++||.++..++++
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~ 100 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKN 100 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777788888888887777654
No 296
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=45.09 E-value=94 Score=23.42 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 039489 269 RRREEEIDRGLKELQ 283 (304)
Q Consensus 269 ~~~~~~l~~~I~~L~ 283 (304)
+.+++++++..+.|.
T Consensus 55 ~er~~Kl~~~~e~l~ 69 (86)
T 3nr7_A 55 EERTRKLQQYREMLI 69 (86)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444433333
No 297
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=44.70 E-value=86 Score=29.87 Aligned_cols=40 Identities=13% Similarity=0.224 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039489 235 AVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEE 274 (304)
Q Consensus 235 ~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~ 274 (304)
.+.+..+.++.+.+++.+..++..+.+..++++|.+++..
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 46 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETV 46 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555443
No 298
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=44.68 E-value=43 Score=25.85 Aligned_cols=15 Identities=0% Similarity=0.133 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 039489 263 STQALLRRREEEIDR 277 (304)
Q Consensus 263 ~~q~eL~~~~~~l~~ 277 (304)
++..+|...+...+.
T Consensus 67 ~l~~~l~~~k~~F~~ 81 (93)
T 3sjb_C 67 NLKDEIQSENKAFQA 81 (93)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 299
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=44.64 E-value=23 Score=26.01 Aligned_cols=19 Identities=5% Similarity=0.167 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 039489 279 LKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 279 I~~L~~E~~eLe~~l~~l~ 297 (304)
|..|+++.++|+..++.|.
T Consensus 59 I~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 59 IQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544443
No 300
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=44.51 E-value=64 Score=31.34 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 274 EIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
+|...++.|+++.++||..+..+.++
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~ 98 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEELKKK 98 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677777777777777776554
No 301
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=44.47 E-value=79 Score=22.25 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039489 275 IDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 275 l~~~I~~L~~E~~eLe~~l~~l 296 (304)
|+.-++.|+.+.++|+..+..|
T Consensus 35 Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 35 LEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444
No 302
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=44.45 E-value=43 Score=26.51 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
+.|+..-+.+...+..|+.+..++++.++.+
T Consensus 11 q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l 41 (133)
T 1fxk_C 11 NIYQSQVELIQQQMEAVRATISELEILEKTL 41 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 303
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=44.45 E-value=80 Score=30.26 Aligned_cols=26 Identities=23% Similarity=0.157 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 274 EIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
+|...++.|+++.++||..+..+.++
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (421)
T 1ses_A 68 ALIARGKALGEEAKRLEEALREKEAR 93 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666665543
No 304
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=44.37 E-value=95 Score=30.85 Aligned_cols=61 Identities=10% Similarity=0.151 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhh
Q 039489 238 KLVEMVHADITGMRKAREVEVEGLFSTQALL-----RRREEEIDRGLKELQD-----EREGLEQQLQIVLM 298 (304)
Q Consensus 238 al~dkl~~el~~l~~t~~ae~e~l~~~q~eL-----~~~~~~l~~~I~~L~~-----E~~eLe~~l~~l~~ 298 (304)
+..|+.+++..+.+...+..+..+.+.-.++ ...++++++.|+++++ ..+++++.++.|..
T Consensus 523 ~~~d~~~~~~~~~~n~~e~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 593 (605)
T 2kho_A 523 AEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQ 593 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4456667777777766666666555433222 2334455555554442 23455555555544
No 305
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=44.27 E-value=27 Score=27.08 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
+-|.+|+. .|..|++|..+|++.+...
T Consensus 45 ~~~~~R~~----~V~~lq~Ki~elkr~lAd~ 71 (96)
T 2ic9_A 45 STLQSRRA----AVSALETKLGELKRELADL 71 (96)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 44444444 3456788888888877655
No 306
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=44.14 E-value=1e+02 Score=23.29 Aligned_cols=8 Identities=13% Similarity=0.605 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 039489 247 ITGMRKAR 254 (304)
Q Consensus 247 l~~l~~t~ 254 (304)
|+.|+...
T Consensus 42 L~~LKkkl 49 (84)
T 1gmj_A 42 LAALKKHK 49 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33344333
No 307
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=43.96 E-value=1.1e+02 Score=23.43 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 249 GMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 249 ~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
.=+...-++++.|.....+|..+.+.|...+.++.+|.+.+.+..+.|
T Consensus 41 ~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 41 SCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455566666777777777777778888888888888887777655
No 308
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=43.91 E-value=9.7 Score=30.25 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=19.1
Q ss_pred ceeEEEeecccCCCCCCeEEEe
Q 039489 89 NIPVIIWLMESYPRHPPCVYVN 110 (304)
Q Consensus 89 nIPi~Iwlp~~YP~~pPivyV~ 110 (304)
.+=+.|.+|.+||..+|.+++.
T Consensus 64 ~~~L~v~~p~~YP~~~P~i~l~ 85 (137)
T 1ukx_A 64 QVELRVKCPPTYPDVVPEIDLK 85 (137)
T ss_dssp EEEEEECCCTTTTSSCCCCEEE
T ss_pred EEEEEEECCCCCCCCCCcEEEe
Confidence 4667889999999999999984
No 309
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=43.84 E-value=1e+02 Score=23.31 Aligned_cols=61 Identities=13% Similarity=0.259 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhc
Q 039489 232 KRNAVNKLVEMVHADITGMRKAREVEVEGL--FSTQALLRRREEEIDRGLKELQDEREG-LEQQLQIVLMN 299 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l--~~~q~eL~~~~~~l~~~I~~L~~E~~e-Le~~l~~l~~~ 299 (304)
|+.+|+++ ++...|+.++.++.+-|+.++ -..+ +..+..-|+..+.+.+. |++.+..+.+.
T Consensus 32 Rk~~i~~i-e~~ldEA~ell~qMelE~~~~~~p~~~------R~~~~~klr~Yk~dl~~~lk~~lk~l~d~ 95 (97)
T 3onj_A 32 RNTTLKHV-EQQQDELFDLLDQMDVEVNNSIGDASE------RATYKAKLREWKKTIQSDIKRPLQSLVDS 95 (97)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCHHH------HHHHHHHHHHHHHHHHHHTHHHHHHHHHS
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 44445444 445567777777777777666 3222 34555566666666666 66666666554
No 310
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=43.67 E-value=1.5e+02 Score=29.43 Aligned_cols=27 Identities=7% Similarity=0.040 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 039489 237 NKLVEMVHADITGMRKAREVEVEGLFS 263 (304)
Q Consensus 237 sal~dkl~~el~~l~~t~~ae~e~l~~ 263 (304)
.+..|+.+++..+.+...+..+....+
T Consensus 522 ~~~~d~~~~~~~~~~n~~e~~~~~~~~ 548 (605)
T 4b9q_A 522 NAEADRKCEELVQTRNQGDHLLHSTRK 548 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677776666666666655544
No 311
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=43.60 E-value=35 Score=26.70 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
++|.++++.|++.|+.+++....|.
T Consensus 16 ~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 16 RQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555666666666665555554
No 312
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=43.56 E-value=1e+02 Score=23.31 Aligned_cols=31 Identities=10% Similarity=0.123 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
.+|+.+-.+++..+..++.+.++|+..+.++
T Consensus 74 ~~l~~~i~~l~~~i~~l~~~~~~l~~~~~~~ 104 (112)
T 1l8d_A 74 NNSKNTLAKLIDRKSELERELRRIDMEIKRL 104 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666777777777777777766633
No 313
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=43.55 E-value=1.6e+02 Score=25.41 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 039489 247 ITGMRKAREVEVEGLFSTQALLRRREEEIDRGL 279 (304)
Q Consensus 247 l~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I 279 (304)
++..++...++.++..+++.++......+++.-
T Consensus 110 ~~~~rK~~~~~~~~~~~~~~~~~~~~~~l~Kak 142 (276)
T 2v0o_A 110 QVKSHKKTKEEVAGTLEAVQTIQSITQALQKSK 142 (276)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444434444444444334444333
No 314
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=43.53 E-value=97 Score=22.90 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
.+|+++...|..-|..|+.|...|.
T Consensus 46 ~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 46 LELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666665555554
No 315
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=43.51 E-value=1e+02 Score=23.05 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=15.6
Q ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 263 STQALLRRREE------EIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 263 ~~q~eL~~~~~------~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
+.+.|+..|+. .+.+.+..+---+.+||..++.|.
T Consensus 36 KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~ 76 (86)
T 3swk_A 36 KLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34455554443 233334444444444555554443
No 316
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=43.43 E-value=56 Score=28.20 Aligned_cols=14 Identities=21% Similarity=0.140 Sum_probs=10.7
Q ss_pred CHHHHHHHHHHHhc
Q 039489 144 NLVDLVRELSACFS 157 (304)
Q Consensus 144 ~L~~Lv~~l~~~F~ 157 (304)
..-+.|++|..+|-
T Consensus 82 ~~e~Yv~eL~kAl~ 95 (184)
T 3w03_C 82 EKGKYVGELRKALL 95 (184)
T ss_dssp CHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHh
Confidence 56778888888883
No 317
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=43.17 E-value=13 Score=30.41 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.0
Q ss_pred ceeEEEeecccCCCCCCeEEEec
Q 039489 89 NIPVIIWLMESYPRHPPCVYVNP 111 (304)
Q Consensus 89 nIPi~Iwlp~~YP~~pPivyV~p 111 (304)
.|=+.|.+|.+||..+|.+.|+.
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~ 96 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRS 96 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEEC
T ss_pred eEEEEEECCCCCCCCCCeEEEEc
Confidence 45678999999999999999974
No 318
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=43.09 E-value=46 Score=26.92 Aligned_cols=55 Identities=16% Similarity=0.113 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 235 AVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGL 289 (304)
Q Consensus 235 ~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eL 289 (304)
-|.++.+.++.+++++...-.+.++.+..++.+-..-+...-++|.++.++.++.
T Consensus 6 ~i~~ei~e~~~~i~~l~~~Ik~il~~~~st~~~~~~lEsiAAKIIkDisdkId~C 60 (129)
T 3f6n_A 6 QIQKEVSEILSDQKSMKADIKAILELLGSQNPIKESLETVAAKIVNDLTKLINDC 60 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHHHHHHHHHHhcC
Confidence 3566677777788888877777777777766555555566667777777776643
No 319
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=42.97 E-value=1.4e+02 Score=28.80 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=10.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Q 039489 256 VEVEGLFSTQALLRRREEEIDRGLK 280 (304)
Q Consensus 256 ae~e~l~~~q~eL~~~~~~l~~~I~ 280 (304)
+..+...++|.+|.....+|++.-+
T Consensus 133 ~~~~~~~k~qk~l~~~~~~l~KaKk 157 (486)
T 3haj_A 133 EAEDGFRKAQKPWAKKLKEVEAAKK 157 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455444444444443333
No 320
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=42.90 E-value=71 Score=22.43 Aligned_cols=33 Identities=9% Similarity=0.165 Sum_probs=15.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 258 VEGLFSTQALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 258 ~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
.+.+.++|++|.+=+..+.++|+++=+.-+.|+
T Consensus 8 ~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd 40 (65)
T 1gl2_A 8 NDRVRNLQSEVEGVKNIMTQNVERILARGENLD 40 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344555555555555555555554444444333
No 321
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=42.85 E-value=96 Score=22.65 Aligned_cols=22 Identities=5% Similarity=0.120 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 039489 244 HADITGMRKAREVEVEGLFSTQ 265 (304)
Q Consensus 244 ~~el~~l~~t~~ae~e~l~~~q 265 (304)
+..|+.++...+.-++.+...+
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e 26 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAE 26 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444433333333333333
No 322
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=42.77 E-value=1.5e+02 Score=25.58 Aligned_cols=9 Identities=11% Similarity=0.667 Sum_probs=6.0
Q ss_pred ccCCCceec
Q 039489 124 VTPSGLVSI 132 (304)
Q Consensus 124 Vd~~G~v~l 132 (304)
+|.||.+..
T Consensus 90 iD~nGiL~V 98 (219)
T 4e81_A 90 IDADGILHV 98 (219)
T ss_dssp ECTTCCEEE
T ss_pred eCCCCCEee
Confidence 477776654
No 323
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=42.45 E-value=27 Score=32.31 Aligned_cols=19 Identities=26% Similarity=0.620 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhccCCCCCC
Q 039489 145 LVDLVRELSACFSREPPLYS 164 (304)
Q Consensus 145 L~~Lv~~l~~~F~~~pPl~~ 164 (304)
|++|++.... +....+.|.
T Consensus 110 Lvel~~~~~~-~~~~~~~~~ 128 (315)
T 2ve7_A 110 LIDCIKIHTA-MKESSPLFD 128 (315)
T ss_dssp HHHHHHHHHH-HHHCC----
T ss_pred HHHHHHHHHH-hhhcccccc
Confidence 4555544332 333445554
No 324
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=42.23 E-value=95 Score=24.95 Aligned_cols=56 Identities=25% Similarity=0.309 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH-HH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFS-TQ----ALLRRREEEIDRGLKELQDEREGLEQ 291 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~-~q----~eL~~~~~~l~~~I~~L~~E~~eLe~ 291 (304)
|..+.++-..-+++|..-.++|-+.|.+ -+ .++.++++.+=..|+.+++++..+..
T Consensus 9 L~~~L~~~~~~l~~L~~lL~~E~~~L~~~~d~~~L~~i~~~K~~ll~~L~~~~~~R~~~l~ 69 (154)
T 3opc_A 9 LKSCLERENALVVEFLHALEAETEALMDRRAHESLQAAVQRKETLADDLAQLGAERDALLS 69 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555 33 55555566666666666666655543
No 325
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=42.15 E-value=66 Score=21.23 Aligned_cols=21 Identities=14% Similarity=0.414 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039489 272 EEEIDRGLKELQDEREGLEQQ 292 (304)
Q Consensus 272 ~~~l~~~I~~L~~E~~eLe~~ 292 (304)
-++.++-|.+|+.+..+||+.
T Consensus 18 I~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 18 ITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334455556677777777654
No 326
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=42.05 E-value=1.3e+02 Score=24.06 Aligned_cols=19 Identities=11% Similarity=0.232 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039489 234 NAVNKLVEMVHADITGMRK 252 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~ 252 (304)
..+.++.+-+..|-+.|.+
T Consensus 18 ~~l~~L~~lL~~E~~~L~~ 36 (154)
T 3opc_A 18 ALVVEFLHALEAETEALMD 36 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444444445444444444
No 327
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=42.04 E-value=1.8e+02 Score=28.89 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039489 263 STQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNS 300 (304)
Q Consensus 263 ~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~ 300 (304)
+.-+++.+++.+-.+-+.+++-+.++.+..+.+...+.
T Consensus 335 k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~ 372 (551)
T 2b5u_A 335 EDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEI 372 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhh
Confidence 33344444555556666666666666666666555443
No 328
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=41.80 E-value=85 Score=24.70 Aligned_cols=27 Identities=7% Similarity=0.146 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 228 TEVFKRNAVNKLVEMVHADITGMRKAR 254 (304)
Q Consensus 228 ~E~~r~s~lsal~dkl~~el~~l~~t~ 254 (304)
.+++.+.++..+.+.+..+++.++...
T Consensus 27 ~~~La~elL~~fl~~~~~~~~~l~~a~ 53 (123)
T 3iqt_A 27 KTDLARDMLQMLLDFLPEVRNKVEEQL 53 (123)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888887643
No 329
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=41.75 E-value=5.5 Score=38.43 Aligned_cols=13 Identities=15% Similarity=0.064 Sum_probs=8.9
Q ss_pred CceeccccccccC
Q 039489 128 GLVSIPYLQNWIY 140 (304)
Q Consensus 128 G~v~lpyL~~W~~ 140 (304)
|...++.++.|.-
T Consensus 167 ~v~iIlVinK~Dl 179 (418)
T 2qag_C 167 KVNIIPLIAKADT 179 (418)
T ss_dssp TSEEEEEEESTTS
T ss_pred cCcEEEEEEcccC
Confidence 5556778888863
No 330
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=41.74 E-value=74 Score=26.10 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039489 273 EEIDRGLKELQDEREGLEQQ 292 (304)
Q Consensus 273 ~~l~~~I~~L~~E~~eLe~~ 292 (304)
...++....++.|.++|...
T Consensus 63 ~~aE~~~~~ie~ElE~LTas 82 (135)
T 2e7s_A 63 TKAEEEADKLNKEVEDLTAS 82 (135)
T ss_dssp HHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555443
No 331
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=41.57 E-value=2.2e+02 Score=26.83 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=8.0
Q ss_pred CCHHHHHHHHHH
Q 039489 143 SNLVDLVRELSA 154 (304)
Q Consensus 143 s~L~~Lv~~l~~ 154 (304)
.+|.+||..-..
T Consensus 78 ~SL~eLV~~Y~~ 89 (373)
T 3hhm_B 78 SSVVELINHYRN 89 (373)
T ss_dssp SSSHHHHHHHHH
T ss_pred CCHHHHHHHHhh
Confidence 477888776544
No 332
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=41.56 E-value=1.1e+02 Score=22.79 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=3.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039489 277 RGLKELQDEREGLEQQL 293 (304)
Q Consensus 277 ~~I~~L~~E~~eLe~~l 293 (304)
....+|+.+..|||+.+
T Consensus 58 ~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 58 QAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444333
No 333
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=41.53 E-value=63 Score=21.31 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 267 LLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 267 eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
+|-+.-+++++.|..-+.+..+|.+.+..|+.
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666666666666666554
No 334
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=41.41 E-value=42 Score=25.72 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 039489 279 LKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 279 I~~L~~E~~eLe~~l~~l~ 297 (304)
+++++.+.++|++.+..+.
T Consensus 61 ~e~i~~k~~eL~~~~~~i~ 79 (113)
T 3lof_A 61 KDEFEHKRKELEQVCNPII 79 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5667777777777666553
No 335
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=41.26 E-value=74 Score=27.89 Aligned_cols=9 Identities=22% Similarity=0.287 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 039489 231 FKRNAVNKL 239 (304)
Q Consensus 231 ~r~s~lsal 239 (304)
.||.||.+.
T Consensus 105 ~RR~AL~ea 113 (209)
T 2wvr_A 105 KRRKALYEA 113 (209)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345454443
No 336
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=41.20 E-value=42 Score=29.32 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 264 TQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 264 ~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
+.+-|+++.+++++.|++|++.++.|+..++.+.
T Consensus 80 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~ 113 (278)
T 1r8e_A 80 LFAFYTEQERQIREKLDFLSALEQTISLVKKRMK 113 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666666665555443
No 337
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=41.13 E-value=34 Score=20.12 Aligned_cols=21 Identities=14% Similarity=0.370 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039489 269 RRREEEIDRGLKELQDEREGL 289 (304)
Q Consensus 269 ~~~~~~l~~~I~~L~~E~~eL 289 (304)
++....|+..|..|+-|.+.|
T Consensus 6 kqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 6 KQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHh
Confidence 333333333333343333333
No 338
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=41.06 E-value=1.6e+02 Score=24.60 Aligned_cols=30 Identities=23% Similarity=0.322 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQI 295 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~ 295 (304)
.+-..|-+..++.|..|+.+.+.||..|..
T Consensus 87 KEAE~RAE~AERsv~kLEk~id~lEd~L~~ 116 (155)
T 2efr_A 87 KEAETRAEFAERSVTKLEKSIDDLEDELYA 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555555555443
No 339
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=40.91 E-value=42 Score=27.31 Aligned_cols=32 Identities=3% Similarity=-0.002 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
..|.+..+.|++.+++|++-.+.|+..+..+.
T Consensus 83 ~~L~~q~~~L~~~i~~l~~~l~~l~~~i~~~~ 114 (146)
T 3hh0_A 83 RQMHFQREVLLAEQERIAKVLSHMDEMTKKFQ 114 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445555555555555555555555555543
No 340
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=40.85 E-value=64 Score=30.11 Aligned_cols=25 Identities=24% Similarity=0.098 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 274 EIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
.|+..|+.++.+..+|++.|..++.
T Consensus 30 ~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 30 ELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554443
No 341
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.69 E-value=11 Score=29.83 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=19.1
Q ss_pred ceeEEEeecccCCCCCCeEEEe
Q 039489 89 NIPVIIWLMESYPRHPPCVYVN 110 (304)
Q Consensus 89 nIPi~Iwlp~~YP~~pPivyV~ 110 (304)
.+=+.|.+|.+||..+|.+.|.
T Consensus 57 ~~~L~~~~p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 57 PLELVFHLPVNYPSCLPGISIN 78 (128)
T ss_dssp EEEEEEEECSSTTSSCCCCCCC
T ss_pred EEEEEEECCCCCCCCCCeEEEE
Confidence 4567899999999999999886
No 342
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=40.61 E-value=81 Score=24.05 Aligned_cols=13 Identities=8% Similarity=0.212 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRG 278 (304)
Q Consensus 266 ~eL~~~~~~l~~~ 278 (304)
++|........+.
T Consensus 68 e~L~~~S~~F~k~ 80 (96)
T 1sfc_A 68 DALQAGASQFETS 80 (96)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 343
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=40.52 E-value=55 Score=19.63 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039489 275 IDRGLKELQDEREGLEQQLQI 295 (304)
Q Consensus 275 l~~~I~~L~~E~~eLe~~l~~ 295 (304)
|++....|+.+.+.||+.++.
T Consensus 6 lekkcaalesklqalekklea 26 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 344
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=40.34 E-value=1.6e+02 Score=24.55 Aligned_cols=15 Identities=13% Similarity=0.322 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 039489 276 DRGLKELQDEREGLE 290 (304)
Q Consensus 276 ~~~I~~L~~E~~eLe 290 (304)
++||..-+.+...+|
T Consensus 100 N~MVa~ar~~~~~~e 114 (154)
T 2ocy_A 100 NNMVADARKEKYAIE 114 (154)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344433333333333
No 345
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=40.34 E-value=1.4e+02 Score=23.81 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 238 KLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDE 285 (304)
Q Consensus 238 al~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E 285 (304)
.+.+.|+++++.++...+..+-.-.+.-.+|+.+-..|+..+..-+..
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888777777777776677777777776666554433
No 346
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=40.32 E-value=46 Score=22.53 Aligned_cols=27 Identities=11% Similarity=0.299 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 272 EEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 272 ~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
+.+....|+.|.++.+++-++++.|+.
T Consensus 18 Q~~v~~~l~~Lt~kL~~vt~rle~lEn 44 (47)
T 1aq5_A 18 QTKVEELINTLQQKLEAVAKRIEALEN 44 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555566666666666655543
No 347
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=40.31 E-value=1.4e+02 Score=29.58 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
.|-+.|.++-.++|+.++++.+.|.++|+
T Consensus 178 kE~~~Rt~dE~~mi~~yr~k~~aL~~aIe 206 (526)
T 3iyk_A 178 KEIGERTHAETVMVKEYRDKIDALKNAIE 206 (526)
T ss_pred HHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555667777777777777766665
No 348
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Probab=40.15 E-value=1.4e+02 Score=25.16 Aligned_cols=19 Identities=26% Similarity=0.576 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039489 278 GLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 278 ~I~~L~~E~~eLe~~l~~l 296 (304)
+...|+++.++.|.+|..-
T Consensus 104 ~f~~Lq~eL~~~EnrIa~A 122 (171)
T 2etd_A 104 NFRQLMDELAGTENRIAVA 122 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445677777777777643
No 349
>2f8x_M MAM-1, mastermind-like protein 1; notch, CSL, HES-1, ankyrin repeats, REL- homology region, transcription/DNA complex; 3.25A {Homo sapiens} PDB: 3nbn_C 3v79_M*
Probab=40.05 E-value=1e+02 Score=22.09 Aligned_cols=37 Identities=11% Similarity=0.003 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 039489 237 NKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREE 273 (304)
Q Consensus 237 sal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~ 273 (304)
++++|+|+++|+--++...+=.-...+++.++.+.+.
T Consensus 6 ~avvdRLRrRIE~~Rrhh~~C~~Rye~~~~~~~e~er 42 (63)
T 2f8x_M 6 SAVMERLRRRIELCRRHHSTCEARYEAVSPERLELER 42 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhccchhHHHHHhHHHHHHHH
Confidence 6799999999998888766666666666655444433
No 350
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=39.98 E-value=1.1e+02 Score=22.39 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 039489 235 AVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLK 280 (304)
Q Consensus 235 ~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~ 280 (304)
.+..+...+..|++.......+.-+..-+++..|+....++.+.++
T Consensus 30 ~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~ 75 (82)
T 2nps_D 30 VLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSH 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444443
No 351
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=39.88 E-value=1.2e+02 Score=23.01 Aligned_cols=15 Identities=13% Similarity=0.162 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 039489 242 MVHADITGMRKAREV 256 (304)
Q Consensus 242 kl~~el~~l~~t~~a 256 (304)
+++.++++......+
T Consensus 34 ~vq~eldeVk~IM~~ 48 (96)
T 1sfc_A 34 QTQAQVDEVVDIMRV 48 (96)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444333
No 352
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=39.84 E-value=92 Score=21.57 Aligned_cols=16 Identities=19% Similarity=0.135 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 039489 264 TQALLRRREEEIDRGL 279 (304)
Q Consensus 264 ~q~eL~~~~~~l~~~I 279 (304)
+|++|..=+..+.++|
T Consensus 9 v~~~l~ev~~iM~~NI 24 (63)
T 1n7s_A 9 TQAQVDEVVDIMRVNV 24 (63)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 353
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=39.70 E-value=35 Score=34.21 Aligned_cols=13 Identities=8% Similarity=0.179 Sum_probs=6.2
Q ss_pred HHHHHHHhCCCCc
Q 039489 44 HLLTLISTFPSLD 56 (304)
Q Consensus 44 dv~~vl~~yp~L~ 56 (304)
..+.+++..|.+-
T Consensus 190 ~yL~~a~~lp~YG 202 (575)
T 2i1j_A 190 EYLKIAQDLEMYG 202 (575)
T ss_dssp HHHHHHTTSTTTT
T ss_pred HHHHHHHhccccC
Confidence 3444555555443
No 354
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=39.51 E-value=1.7e+02 Score=24.47 Aligned_cols=8 Identities=13% Similarity=0.422 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 039489 245 ADITGMRK 252 (304)
Q Consensus 245 ~el~~l~~ 252 (304)
.++++++.
T Consensus 89 kdlee~r~ 96 (185)
T 3r2p_A 89 KDLEEVKA 96 (185)
T ss_dssp HHHHHHHH
T ss_pred ccHHHHHH
Confidence 33333333
No 355
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=39.31 E-value=1.3e+02 Score=24.13 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=20.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 259 EGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQI 295 (304)
Q Consensus 259 e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~ 295 (304)
+-+.+..++|+++-++|++.++.|+.+.+..++.+..
T Consensus 84 ~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 120 (142)
T 3gp4_A 84 ELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIP 120 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344666666666666666666666666555443
No 356
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=39.30 E-value=34 Score=27.88 Aligned_cols=13 Identities=15% Similarity=0.388 Sum_probs=1.8
Q ss_pred HHHHHHHHHHHHH
Q 039489 236 VNKLVEMVHADIT 248 (304)
Q Consensus 236 lsal~dkl~~el~ 248 (304)
|++.++.|+++++
T Consensus 4 l~~~~~~l~~~~~ 16 (182)
T 3kqg_A 4 LNAQIPELKSDLE 16 (182)
T ss_dssp ---------CHHH
T ss_pred hhhhHHHHHHHHH
Confidence 4444444444444
No 357
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=39.21 E-value=36 Score=27.04 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 227 QTEVFKRNAVNKLVEMVHADITGMR---------KAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 227 a~E~~r~s~lsal~dkl~~el~~l~---------~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
..|-.||..|++-+..|+.-+-... ...+.-++=+..+|.+..+-++ .+...+.|+.+...|...|+.|+
T Consensus 33 ~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~-~~~~~~~l~~~n~~L~~riqeLE 111 (118)
T 4ati_A 33 LIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD-LENRQKKLEHANRHLLLRVQELE 111 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHH-HCC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888887776543221 1223333334444432222211 12234556777777777777776
Q ss_pred hccc
Q 039489 298 MNSD 301 (304)
Q Consensus 298 ~~~~ 301 (304)
+.+.
T Consensus 112 ~~a~ 115 (118)
T 4ati_A 112 MQAR 115 (118)
T ss_dssp ----
T ss_pred HHHH
Confidence 6543
No 358
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=39.03 E-value=2.5e+02 Score=27.70 Aligned_cols=23 Identities=17% Similarity=0.033 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 039489 241 EMVHADITGMRKAREVEVEGLFS 263 (304)
Q Consensus 241 dkl~~el~~l~~t~~ae~e~l~~ 263 (304)
++..+++++...+-++|.+.+++
T Consensus 33 e~~~ae~~a~n~~i~aeNeaikk 55 (497)
T 3iox_A 33 EAAVAANNAANAALTAENTAIKK 55 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHH
Confidence 33344444444444445555544
No 359
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=39.00 E-value=78 Score=25.64 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039489 274 EIDRGLKELQDEREGLEQQLQI 295 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~ 295 (304)
+|++-|.+|+.+.++|+.++..
T Consensus 65 eL~~ki~eL~~kvA~le~e~~~ 86 (125)
T 2pms_C 65 ELSDKIDELDAEIAKLEDQLKA 86 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555554443
No 360
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=38.74 E-value=97 Score=21.55 Aligned_cols=14 Identities=21% Similarity=0.190 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 039489 246 DITGMRKAREVEVE 259 (304)
Q Consensus 246 el~~l~~t~~ae~e 259 (304)
+++++.+.-+++..
T Consensus 26 rieelkkkweelkk 39 (67)
T 1lq7_A 26 RIEELKKKWEELKK 39 (67)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 44455444444433
No 361
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=38.71 E-value=96 Score=30.50 Aligned_cols=21 Identities=29% Similarity=0.378 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 039489 279 LKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 279 I~~L~~E~~eLe~~l~~l~~~ 299 (304)
.+.|+++.++||..+..+.++
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~ 133 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEE 133 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 667778888888887777654
No 362
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=38.71 E-value=1.3e+02 Score=25.58 Aligned_cols=45 Identities=16% Similarity=0.230 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 039489 241 EMVHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDE 285 (304)
Q Consensus 241 dkl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E 285 (304)
+.|+++|+++....+.+.+.|.... -+|+++-+.++-.|-.|...
T Consensus 99 e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~ 146 (170)
T 3l4q_C 99 ERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKI 146 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4455555554444333333333222 33444444444444333333
No 363
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=38.63 E-value=1.3e+02 Score=23.04 Aligned_cols=61 Identities=8% Similarity=0.249 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEG---LFSTQALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~---l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
.-|....++++..++++.+..++-+.+ ...+..+|..--.++.+..+.++.+.+.|++.+.
T Consensus 15 ~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~ 78 (127)
T 1ez3_A 15 EEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIE 78 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544433321 1123344444444444444555555555554443
No 364
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=38.51 E-value=36 Score=30.82 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGL 289 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eL 289 (304)
..|+.....+++.|++|++|.+.|
T Consensus 71 e~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 71 SKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444445555555555555544
No 365
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=38.41 E-value=1.3e+02 Score=23.22 Aligned_cols=24 Identities=4% Similarity=0.218 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 234 NAVNKLVEMVHADITGMRKAREVE 257 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae 257 (304)
+-|..-.|.|+.++..|..+-..+
T Consensus 16 ~~L~~F~d~Lq~~~~~L~~~f~~L 39 (94)
T 3fx7_A 16 GHLERFKELLREEVNSLSNHFHNL 39 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444445555555554444443
No 366
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=38.14 E-value=50 Score=20.82 Aligned_cols=27 Identities=33% Similarity=0.594 Sum_probs=14.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 039489 255 EVEVEGLFSTQALLRRREEEIDRGLKE 281 (304)
Q Consensus 255 ~ae~e~l~~~q~eL~~~~~~l~~~I~~ 281 (304)
+++...|....+.|+++++.|..-|+.
T Consensus 6 q~dE~kLl~ekE~l~~r~eqL~~kLe~ 32 (34)
T 1a93_A 6 QAEEQKLISEEDLLRKRREQLKHKLEQ 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555555555555443
No 367
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=37.91 E-value=1.3e+02 Score=22.84 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039489 271 REEEIDRGLKELQDEREGL 289 (304)
Q Consensus 271 ~~~~l~~~I~~L~~E~~eL 289 (304)
.++.|+..|..++.|.+.|
T Consensus 33 e~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 33 NRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333
No 368
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=37.85 E-value=2.3e+02 Score=27.21 Aligned_cols=25 Identities=8% Similarity=-0.004 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 274 EIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
.|+..++.++.+.++|+..|..|+.
T Consensus 109 ~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 109 QLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444444445555555555544443
No 369
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=37.82 E-value=1.4e+02 Score=23.19 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039489 268 LRRREEEIDRGLKELQDEREG 288 (304)
Q Consensus 268 L~~~~~~l~~~I~~L~~E~~e 288 (304)
++.....++..-++|..+..|
T Consensus 49 ~~eq~~~le~lk~eL~~~~~e 69 (107)
T 2no2_A 49 TQEQLEVLESLKQELATSQRE 69 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444443333
No 370
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=37.80 E-value=2e+02 Score=24.82 Aligned_cols=10 Identities=40% Similarity=0.770 Sum_probs=7.3
Q ss_pred cccCCCceec
Q 039489 123 HVTPSGLVSI 132 (304)
Q Consensus 123 ~Vd~~G~v~l 132 (304)
.+|.||.+.+
T Consensus 86 ~iD~nGiL~V 95 (227)
T 1u00_A 86 QVDADGLLSV 95 (227)
T ss_dssp EECTTCCEEE
T ss_pred EECCCCcEEE
Confidence 4688887765
No 371
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=37.68 E-value=1.1e+02 Score=21.74 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=16.4
Q ss_pred ChHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 039489 226 DQTEVF--KRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ 265 (304)
Q Consensus 226 ~a~E~~--r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q 265 (304)
++.+.+ .++++.+-+.|++ .|++....+-|.|+.+|
T Consensus 10 it~qeylevK~ALaaSeAkiQ----QLmkVN~~ls~Elr~mQ 47 (63)
T 2w6a_A 10 VTLQEYLELKKALATSEAKVQ----QLMKVNSSLSDELRKLQ 47 (63)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhHHHHH----HHHHHhHhhhHHHHHHH
Confidence 334444 4455555554443 34444444444444444
No 372
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=37.54 E-value=7 Score=36.27 Aligned_cols=15 Identities=20% Similarity=0.425 Sum_probs=7.0
Q ss_pred ecccCCCCCCeEEEe
Q 039489 96 LMESYPRHPPCVYVN 110 (304)
Q Consensus 96 lp~~YP~~pPivyV~ 110 (304)
+...++..-|++|..
T Consensus 303 l~~~ns~~NPiIY~~ 317 (448)
T 2z73_A 303 FAKASAIHNPMIYSV 317 (448)
T ss_dssp HHHHGGGSHHHHHHH
T ss_pred HHHHHHhhcchHHHH
Confidence 333444445555543
No 373
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=37.54 E-value=94 Score=21.04 Aligned_cols=7 Identities=29% Similarity=0.093 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 039489 283 QDEREGL 289 (304)
Q Consensus 283 ~~E~~eL 289 (304)
.++..++
T Consensus 46 ~~~I~~~ 52 (60)
T 3htk_A 46 RDEVIKK 52 (60)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 374
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=37.25 E-value=78 Score=25.95 Aligned_cols=19 Identities=11% Similarity=0.123 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039489 241 EMVHADITGMRKAREVEVE 259 (304)
Q Consensus 241 dkl~~el~~l~~t~~ae~e 259 (304)
++|+.+|+.....+.+.++
T Consensus 13 ~~L~~el~~~~~~r~~~~~ 31 (156)
T 2f23_A 13 ERLMQQLERERERLQEATK 31 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555553333333333
No 375
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=36.84 E-value=1.8e+02 Score=24.15 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 039489 235 AVNKLVEMVHADITGMRKAREVEVEGLFSTQ----ALLRRREE-EIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 235 ~lsal~dkl~~el~~l~~t~~ae~e~l~~~q----~eL~~~~~-~l~~~I~~L~~E~~eLe~~l~ 294 (304)
.+.++-++|+.++++++.+.+.-++.+...- ++|+++=+ -+++..+.+....++|...|.
T Consensus 96 ~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~eeL~~~~~~~~eeLr~kL~ 160 (165)
T 1gs9_A 96 ELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLA 160 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 3344444555555555554444444333311 34443322 233333444444455554443
No 376
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=36.75 E-value=7.3 Score=37.84 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=20.5
Q ss_pred CCceeccccccccC-CCCCHHHHHHHHHHHhc-cCCCCCC
Q 039489 127 SGLVSIPYLQNWIY-PSSNLVDLVRELSACFS-REPPLYS 164 (304)
Q Consensus 127 ~G~v~lpyL~~W~~-~~s~L~~Lv~~l~~~F~-~~pPl~~ 164 (304)
.+.-+++.+..|.. ....+..+.+.+...+. ..-++|.
T Consensus 175 ~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~ 214 (427)
T 2qag_B 175 SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQ 214 (427)
T ss_dssp SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCC
T ss_pred hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEe
Confidence 34456777778863 12345666666665333 3345543
No 377
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=36.39 E-value=2.5e+02 Score=25.57 Aligned_cols=31 Identities=10% Similarity=0.214 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 039489 231 FKRNAVNKLVEMVHADITGMRKAREVEVEGL 261 (304)
Q Consensus 231 ~r~s~lsal~dkl~~el~~l~~t~~ae~e~l 261 (304)
...+.++...++++.-+..+....+...++.
T Consensus 38 ~l~~~~n~~~~~l~~~i~~v~~~~~~l~~~~ 68 (341)
T 3zx6_A 38 ILAKSIERLRRSLMRTVGDVRNGANAIYSGA 68 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666655555555444444333
No 378
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=36.33 E-value=1.2e+02 Score=24.08 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 272 EEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 272 ~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
++++..-+++|+++.+.|.++++.|
T Consensus 85 REkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 85 REKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 4466666777777777777766543
No 379
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=36.31 E-value=1.8e+02 Score=24.05 Aligned_cols=68 Identities=15% Similarity=0.238 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 229 EVFKRNAVNKLVE---MVHADITGMRKAREVEVEGLFS---------TQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 229 E~~r~s~lsal~d---kl~~el~~l~~t~~ae~e~l~~---------~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
|..|..++.++.+ ++-.+++.|.-+.+..++.+.+ +++.+..=+.+++....++.++++.|...++.+
T Consensus 24 e~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv 103 (150)
T 4dci_A 24 PTWKEEAEREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQV 103 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443 4445666666555544444433 123344445566666666666666666665544
No 380
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=36.30 E-value=1.4e+02 Score=22.60 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 262 FSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 262 ~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
.+-...|+..-+.|++.++.++++.++++..+..+
T Consensus 76 ~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 76 KEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444443
No 381
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=35.96 E-value=1.6e+02 Score=24.13 Aligned_cols=22 Identities=9% Similarity=0.244 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhH
Q 039489 240 VEMVHADITGMRK-AREVEVEGL 261 (304)
Q Consensus 240 ~dkl~~el~~l~~-t~~ae~e~l 261 (304)
.++|+.||+.|+. .+-+-.+.+
T Consensus 11 ~~~L~~El~~L~~~~rp~i~~~i 33 (158)
T 1grj_A 11 AEKLREELDFLKSVRRPEIIAAI 33 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhhHhhH
Confidence 4677888888877 344444344
No 382
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=35.94 E-value=45 Score=24.40 Aligned_cols=21 Identities=5% Similarity=0.378 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 039489 278 GLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 278 ~I~~L~~E~~eLe~~l~~l~~ 298 (304)
.|.+|+.++-.|..+|..+..
T Consensus 45 ~l~~LKk~KL~LKDeI~~lL~ 65 (76)
T 1zhc_A 45 EVSHMKKQKLKLKDEIHSMII 65 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 455555555555555555443
No 383
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=35.82 E-value=2.1e+02 Score=24.59 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGL 289 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eL 289 (304)
..|+.+++.+++.++...++...+
T Consensus 87 ~vL~ar~e~i~~v~~~a~~~L~~~ 110 (233)
T 4efa_E 87 KVLSAREQSLDGIFEETKEKLSGI 110 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555566666666555555544
No 384
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=35.42 E-value=83 Score=20.01 Aligned_cols=10 Identities=10% Similarity=0.431 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 039489 274 EIDRGLKELQ 283 (304)
Q Consensus 274 ~l~~~I~~L~ 283 (304)
.|+..+.+|+
T Consensus 19 ~Le~EV~RL~ 28 (36)
T 1kd8_A 19 HLENEVARLE 28 (36)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 385
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=35.31 E-value=1.6e+02 Score=24.58 Aligned_cols=52 Identities=10% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHH-HHH
Q 039489 238 KLVEMVHADITGMRKAREVEVEGLFSTQ----ALLRRREEEIDRGLKELQDER-EGL 289 (304)
Q Consensus 238 al~dkl~~el~~l~~t~~ae~e~l~~~q----~eL~~~~~~l~~~I~~L~~E~-~eL 289 (304)
+...-+++++.++....+++++.+..-- ..|..+-+.++..|....+.. +||
T Consensus 23 r~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~~r~el 79 (171)
T 2p2u_A 23 AEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATFATLNKTEM 79 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
No 386
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=35.28 E-value=1.9e+02 Score=24.82 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 262 FSTQALLRRREEEIDRGLKELQDEREGL 289 (304)
Q Consensus 262 ~~~q~eL~~~~~~l~~~I~~L~~E~~eL 289 (304)
.+.++||+.-+++.+..-+.|.+|...|
T Consensus 182 ~kae~el~~ak~~ye~ln~~L~~eLp~l 209 (251)
T 2fic_A 182 AKAEEELIKAQKVFEEMNVDLQEELPSL 209 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444
No 387
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=35.24 E-value=84 Score=27.60 Aligned_cols=35 Identities=11% Similarity=0.199 Sum_probs=16.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 254 REVEVEGLFSTQALLRRREEEIDRGLKELQDEREG 288 (304)
Q Consensus 254 ~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~e 288 (304)
.+.-+++|..+|.++.+-+++..+.+-+|+++-..
T Consensus 28 ~~~~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~ 62 (225)
T 2e50_A 28 QQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNK 62 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555554444444444444444443
No 388
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=35.07 E-value=1.1e+02 Score=28.87 Aligned_cols=23 Identities=17% Similarity=0.188 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039489 274 EIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
+.++-+++++++.+.+++.+..+
T Consensus 278 k~~~~~~~~~~~~~~~~~~~~~~ 300 (426)
T 1lrz_A 278 KAHNKRDNLQQQLDANEQKIEEG 300 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666665554
No 389
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=34.89 E-value=1.6e+02 Score=22.77 Aligned_cols=19 Identities=16% Similarity=0.337 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 039489 279 LKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 279 I~~L~~E~~eLe~~l~~l~ 297 (304)
.+.++.+.++|++.+..+.
T Consensus 70 ~e~ik~k~~eL~~~~~~i~ 88 (120)
T 2p32_A 70 KEEFEHQQKDLEGLANPII 88 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666665554
No 390
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=34.76 E-value=1e+02 Score=31.29 Aligned_cols=31 Identities=13% Similarity=0.349 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
.+++++-++++..+++|++..++++..+..+
T Consensus 362 ~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~ 392 (695)
T 2j69_A 362 NELKKRIDSVEPEFNKLTGIRDEFQKEIINT 392 (695)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555544433
No 391
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=34.65 E-value=1.4e+02 Score=28.62 Aligned_cols=36 Identities=11% Similarity=0.103 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRR 271 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~ 271 (304)
|.+..+.++.+++++.+..++..+.+..++++|.++
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 43 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQS 43 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443
No 392
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=34.51 E-value=99 Score=27.17 Aligned_cols=10 Identities=10% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q 039489 287 EGLEQQLQIV 296 (304)
Q Consensus 287 ~eLe~~l~~l 296 (304)
+-|.++|.+|
T Consensus 192 ~~L~~cIadl 201 (214)
T 2cly_A 192 ETIAKCIADL 201 (214)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 393
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=34.35 E-value=1.2e+02 Score=27.88 Aligned_cols=11 Identities=36% Similarity=0.301 Sum_probs=5.9
Q ss_pred HHHHHHHHHHH
Q 039489 231 FKRNAVNKLVE 241 (304)
Q Consensus 231 ~r~s~lsal~d 241 (304)
.|++.++.+..
T Consensus 147 ~Rr~~ld~~~~ 157 (371)
T 3auy_A 147 EKLETVAKLLG 157 (371)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 35556665543
No 394
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=34.20 E-value=35 Score=33.96 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhCCCCccccceeecCCCc-eeeEEEEEecccccccCcccceeEEEeecccCCCC-CCeEEEecCCCcee
Q 039489 40 LIRQHLLTLISTFPSLDPKTATFTHNDGR-SVNLLQADGTVPMPFQGVTYNIPVIIWLMESYPRH-PPCVYVNPTRDMII 117 (304)
Q Consensus 40 ~v~~dv~~vl~~yp~L~p~~~~ft~~dG~-~~~LL~L~GtIPi~y~g~~ynIPi~Iwlp~~YP~~-pPivyV~pt~~m~I 117 (304)
-.++|+..+...-. -..-.|. ..|. ....+.|+|.==| .|.. -+||.|-|.. |-. .+.=||.-+. ..|
T Consensus 23 ~a~~dl~eL~~kL~---S~lv~Y~-~~G~~~di~i~lkgPdkI--YGfS-AFPVqi~i~~--~~~~~~~~~vhIt~-Vki 92 (526)
T 2wb7_A 23 AAHKAAAELTAKLR---SDFVEYG-NGGTAGQVLIHIYGPGLI--YGFS-AFPVQIRLEI--PNQPVPFNKVHITE-VTA 92 (526)
T ss_dssp HHHHHHHHHHHHTC---CCEEEEE-EBCSCSSSEEEEEEESCE--ETTC-EEEEEEEEEE--CCCSSTTCCEEEEE-EEE
T ss_pred HHHHHHHHHHHHhh---hheEEec-cCCcccceEEEEEcCccc--cccc-cCcEEEEEec--CCCCcccCceEEEE-EEE
Confidence 36788888877644 3344465 5555 5567888884322 2321 2677777666 322 2222333331 111
Q ss_pred cCCCCcccCCCceeccccccccC
Q 039489 118 KRPHPHVTPSGLVSIPYLQNWIY 140 (304)
Q Consensus 118 ~~~~~~Vd~~G~v~lpyL~~W~~ 140 (304)
-.||.||+-+ ++..|+.
T Consensus 93 ----YVvd~ng~ky--~~~~~~~ 109 (526)
T 2wb7_A 93 ----YVIDENNRTY--WTRVWNS 109 (526)
T ss_dssp ----EEEETTSCEE--EEEEEEG
T ss_pred ----EEEcCCCceE--EEEEecc
Confidence 2358888733 4455654
No 395
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=34.07 E-value=1.3e+02 Score=21.49 Aligned_cols=65 Identities=5% Similarity=-0.005 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 232 KRNAVNKLVEMVHADITGMRKAREVEVEGLF-----STQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l~-----~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
.+..+....+.++..+..|....+.+..... +-.+...+-...+++.++.|++-.++|.+..+.+
T Consensus 17 ~A~~~~~~~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~A~~~ 86 (93)
T 4ioe_A 17 IAGNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILEGISTDLKRIADKF 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666555532211 1123333333344444444444444444444333
No 396
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=33.89 E-value=60 Score=28.00 Aligned_cols=52 Identities=19% Similarity=0.427 Sum_probs=37.9
Q ss_pred EEEeecccCCCCCCeEEEecCCCceecCCCCcccCCCceeccccccccCCCCCHHHHHHHHHHHhccCCCCC
Q 039489 92 VIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVTPSGLVSIPYLQNWIYPSSNLVDLVRELSACFSREPPLY 163 (304)
Q Consensus 92 i~Iwlp~~YP~~pPivyV~pt~~m~I~~~~~~Vd~~G~v~lpyL~~W~~~~s~L~~Lv~~l~~~F~~~pPl~ 163 (304)
|.|-++..||.++|.|.++-.- +. --+|.. .|+|.++++........--+++
T Consensus 42 l~v~l~~~yp~~~P~~~~DlP~--------~~-----------~~~w~~-~ssL~~v~~qF~~~Le~lq~Fw 93 (186)
T 3zqs_A 42 ITLKLKAKYPAESPDYFVDFPV--------PF-----------CASWTP-QSSLISIYSQFLAAIESLKAFW 93 (186)
T ss_dssp EEEECCTTTTTSCCEEECCCSS--------CC-----------CCCCCT-TCCHHHHHHHHHHHHHHTHHHH
T ss_pred EEEEECCCCCCCCCeeEEcCCC--------Cc-----------ccccCC-CccHHHHHHHHHHHHHHHHHHH
Confidence 3788899999999999996321 11 138887 5789888887777766666665
No 397
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=33.79 E-value=2.3e+02 Score=25.39 Aligned_cols=69 Identities=13% Similarity=0.058 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489 232 KRNAVNKLVEMVHADITGMRKAREVEVEGLFS-TQ-ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSD 301 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~-~q-~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~ 301 (304)
...++..+...+.++++.+.......++.|.. +. ..|++=. ...+.+..++++...+.++|+.++++.|
T Consensus 128 LEa~L~~v~~~Le~e~~~l~~~~~~~L~~L~~~i~~~~L~~Ll-~~~k~L~~~~~kv~~vr~~leelLddDe 198 (261)
T 3rkg_A 128 LESIFINVMSALETDFKLHSQICIQILNDLENEVNRLKLRHLL-IKSKDLTLFYQKTLLIRDLLDELLENDD 198 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 45667777777888888887777766666542 11 3333222 2334567777777777777777766544
No 398
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=33.73 E-value=65 Score=25.40 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039489 278 GLKELQDEREGLEQQLQI 295 (304)
Q Consensus 278 ~I~~L~~E~~eLe~~l~~ 295 (304)
.++.|+++.+.||.++..
T Consensus 97 ~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 97 KNKALKSVIQHLEVELNR 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 399
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=33.66 E-value=57 Score=19.63 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039489 263 STQALLRRREEEIDRGLKELQD 284 (304)
Q Consensus 263 ~~q~eL~~~~~~l~~~I~~L~~ 284 (304)
.+..||.+=+.+++.-+++|++
T Consensus 3 ~IkkELtQIK~kvDsLLe~Le~ 24 (28)
T 1txp_A 3 AIKKELTQIKQKVDSLLENLEK 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777777777766664
No 400
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=33.57 E-value=1.3e+02 Score=21.38 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 268 LRRREEEIDRGLKELQDEREGLEQQLQI 295 (304)
Q Consensus 268 L~~~~~~l~~~I~~L~~E~~eLe~~l~~ 295 (304)
|++..++|++..+.|+.|++.-++.+..
T Consensus 26 lE~~~~~Lee~t~~L~~EK~ktd~LL~~ 53 (66)
T 3hls_A 26 LEMLTDRLQLTLRALEDEKKKTDTLLYS 53 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555666666666666555543
No 401
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=33.56 E-value=1e+02 Score=22.20 Aligned_cols=13 Identities=15% Similarity=0.327 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRG 278 (304)
Q Consensus 266 ~eL~~~~~~l~~~ 278 (304)
+.|++.-+++.+.
T Consensus 35 aKL~Rk~DKl~~e 47 (65)
T 3sja_C 35 TKNNRKLDSLDKE 47 (65)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444443333333
No 402
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=33.06 E-value=81 Score=27.30 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
.+|...-+.+...|..++.+.++|++.++.+++.
T Consensus 39 ~~~~~h~~~~~~~i~~~~~~i~~~~~~l~~l~~~ 72 (228)
T 1flk_A 39 GLLESQLSRHDQMLSVHDIRLADMDLRFQVLETA 72 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4456666666777888888888888888888765
No 403
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=32.67 E-value=2.1e+02 Score=26.92 Aligned_cols=10 Identities=20% Similarity=0.079 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 039489 262 FSTQALLRRR 271 (304)
Q Consensus 262 ~~~q~eL~~~ 271 (304)
.++|.++.+-
T Consensus 122 ~klqk~~~k~ 131 (406)
T 4dyl_A 122 QQLQQELTKT 131 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344333333
No 404
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=32.67 E-value=2.3e+02 Score=24.03 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRR-EEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~-~~~l~~~I~~L~~E~~eLe~~l 293 (304)
.++.++.++++ .+.+.++..++..+.+..++..+... .+-++.+++..++|.+++=+.+
T Consensus 122 ~~~~~l~~~L~-~l~~~l~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 181 (202)
T 2p4w_A 122 VKMRELAEFLH-ELNERIREIIEEKRELEEARILIETYIENTMRRLAEENRQIIEEIFRDI 181 (202)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
No 405
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=32.51 E-value=2.3e+02 Score=24.01 Aligned_cols=18 Identities=11% Similarity=0.071 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039489 279 LKELQDEREGLEQQLQIV 296 (304)
Q Consensus 279 I~~L~~E~~eLe~~l~~l 296 (304)
|..++.+..++|+.+...
T Consensus 80 I~llrErea~lEqkVaeq 97 (169)
T 3k29_A 80 IKVVAIQLSEEEEKVNKQ 97 (169)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555556666555544
No 406
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=32.38 E-value=58 Score=25.40 Aligned_cols=30 Identities=33% Similarity=0.444 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQI 295 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~ 295 (304)
..|+++-+.|+..-.+|++++++||..|+.
T Consensus 15 ~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 15 DTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666666666666655
No 407
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=32.34 E-value=2.4e+02 Score=24.09 Aligned_cols=49 Identities=18% Similarity=0.178 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 237 NKLVEMVHADITGMRKAREVEVEGLFST----QALLRRREEEIDRGLKELQDEREG 288 (304)
Q Consensus 237 sal~dkl~~el~~l~~t~~ae~e~l~~~----q~eL~~~~~~l~~~I~~L~~E~~e 288 (304)
.+..+..+- ++|..+.+-++.+.++ +.+.++.++++++.-.+.-.+.++
T Consensus 120 k~~~E~aKv---aiRniRrda~~~lKk~~kiseD~~k~~e~~iQkltd~~i~~id~ 172 (184)
T 1ge9_A 120 HKITEEARV---RVRNVRREAKEMIEELEGISEDEKKRALERLQKLTDKYIDEINK 172 (184)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444554 4444555555555554 466666666666555444444433
No 408
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=32.33 E-value=51 Score=26.75 Aligned_cols=7 Identities=29% Similarity=0.582 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 039489 285 EREGLEQ 291 (304)
Q Consensus 285 E~~eLe~ 291 (304)
+++||++
T Consensus 108 KkAEleK 114 (125)
T 2pms_C 108 KKAELEK 114 (125)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 409
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=32.30 E-value=46 Score=22.92 Aligned_cols=14 Identities=14% Similarity=0.126 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 039489 282 LQDEREGLEQQLQI 295 (304)
Q Consensus 282 L~~E~~eLe~~l~~ 295 (304)
|+++.++||+.|..
T Consensus 49 L~~ri~~Le~~l~~ 62 (70)
T 1zme_C 49 LQKDLNDKTEENNR 62 (70)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 410
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=31.98 E-value=2.6e+02 Score=24.42 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 235 AVNKLVEMVHADITGMRKAREVEVEGLFS----TQALLRRREEEIDRGLKELQDEREGL 289 (304)
Q Consensus 235 ~lsal~dkl~~el~~l~~t~~ae~e~l~~----~q~eL~~~~~~l~~~I~~L~~E~~eL 289 (304)
.+.+..+..+--+..+|+...+.+..+.+ .+.++++.++++++.-.+.-.+.+++
T Consensus 140 ~ak~~~E~aKvaIRniRrda~~~lKk~~K~~~isEDe~k~~e~eiQklTd~~i~~iD~~ 198 (209)
T 4gfq_A 140 VVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEI 198 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544443 22566666666666555444444433
No 411
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=31.98 E-value=1.2e+02 Score=26.60 Aligned_cols=19 Identities=5% Similarity=-0.057 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 039489 247 ITGMRKAREVEVEGLFSTQ 265 (304)
Q Consensus 247 l~~l~~t~~ae~e~l~~~q 265 (304)
++++.....+..+.+.+++
T Consensus 68 l~~l~~e~~el~d~~lR~~ 86 (213)
T 4ani_A 68 IAELEAKLSEMEHRYLRLY 86 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 412
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=31.97 E-value=1.3e+02 Score=30.35 Aligned_cols=37 Identities=8% Similarity=0.126 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039489 264 TQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNS 300 (304)
Q Consensus 264 ~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~ 300 (304)
.+.++++++..+++++..|.+++.|+-..+.++....
T Consensus 53 ~~~~~~~~~~~l~~~~~~l~~~R~~~~~~~~~~~~~~ 89 (575)
T 1bf5_A 53 AKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVT 89 (575)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777888899999999999988877666655443
No 413
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=31.88 E-value=1.5e+02 Score=21.54 Aligned_cols=29 Identities=14% Similarity=0.129 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 039489 274 EIDRGLKELQDEREGLEQQLQIVLMNSDI 302 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~l~~~~~~ 302 (304)
.|++.+..|+.|.++|.+.++.|...-..
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677777777777777776655443
No 414
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=31.85 E-value=9.8 Score=36.93 Aligned_cols=10 Identities=20% Similarity=0.654 Sum_probs=6.5
Q ss_pred HHHHHHHHHH
Q 039489 229 EVFKRNAVNK 238 (304)
Q Consensus 229 E~~r~s~lsa 238 (304)
|.+|.+.|++
T Consensus 296 E~yR~~~L~~ 305 (427)
T 2qag_B 296 ELYRRCKLEE 305 (427)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 6676666664
No 415
>3vjf_A WA20; protein design, de novo protein, binary patterned design, FO bundle, rudimentary enzymatic activitie; 2.20A {Synthetic construct}
Probab=31.81 E-value=1.6e+02 Score=21.96 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=23.2
Q ss_pred HHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 039489 256 VEVEGLFSTQALLRRR---EEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 256 ae~e~l~~~q~eL~~~---~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
..||.||.-=+-..++ ..+|..+|-+|++=...++..++
T Consensus 35 qqmeqlfqefqhfmqgnqddgklqnmihemqqfmnqvdnhlq 76 (102)
T 3vjf_A 35 QQMEQLFQEFQHFMQGNQDDGKLQNMIHEMQQFMNQVDNHLQ 76 (102)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555433333333 33788888888877777766554
No 416
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=31.76 E-value=69 Score=24.05 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 039489 227 QTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQA 266 (304)
Q Consensus 227 a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~ 266 (304)
+.||+.|+++- .+++++.+++...+-|+.|.++.+
T Consensus 62 aiehier~rl~-----ykreie~l~~~ekeime~ls~l~~ 96 (99)
T 3aei_A 62 AIEHIERSRLV-----YKREIEKLKKREKEIMEELSKLRA 96 (99)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 67777776653 567888888888888888877654
No 417
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=31.66 E-value=90 Score=21.34 Aligned_cols=25 Identities=12% Similarity=0.276 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 274 EIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
+|+.-+..|+.|...|...++.|..
T Consensus 26 ~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 26 SLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444456666666666666666654
No 418
>4ehp_B Catenin alpha-1; adherens junctions, vinculin binding site, vinculin binding helix bundle, cell adhesion; 2.66A {Homo sapiens}
Probab=31.62 E-value=17 Score=28.99 Aligned_cols=54 Identities=9% Similarity=0.254 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 231 FKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQ 292 (304)
Q Consensus 231 ~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~ 292 (304)
-+|..|=+.-+.+|..|+.|.... .+.+.. +.+.+.|+..|..|.++-.+|.++
T Consensus 57 e~RerIv~eCnavRqaLQdLlsey-------m~~~g~-ke~se~L~~aI~km~~kt~dLrRq 110 (111)
T 4ehp_B 57 DRRERIVAECNAVRQALQDLLSEY-------MGNAGR-KERSDALNSAIDKMTKKTRDLRRQ 110 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HGGGCC-CCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHhccc-cccchhHHHHHHHHHHHHHHHHhc
Confidence 344444444444444444444332 222222 455678999999999999998765
No 419
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=31.59 E-value=1.1e+02 Score=20.01 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039489 275 IDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 275 l~~~I~~L~~E~~eLe~~l~~l 296 (304)
++..++.|+++...|...++.+
T Consensus 25 leselqalekklaalksklqal 46 (48)
T 1g6u_A 25 LESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455555555555555544
No 420
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=31.55 E-value=1.8e+02 Score=25.81 Aligned_cols=36 Identities=11% Similarity=-0.051 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 039489 232 KRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQAL 267 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~e 267 (304)
-++.+.++++.++.+|++..+.++..++.-+.+...
T Consensus 16 ~~~~i~~iF~~~~~~Ld~~~d~REriik~sRdIt~~ 51 (249)
T 3axj_A 16 SNFVNLDIFSNYQKYIDNEQEVRENIRIVVREIEHL 51 (249)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888888888777776666555533
No 421
>2wam_A RV2714, conserved hypothetical alanine and leucine rich protein; unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=31.50 E-value=63 Score=30.47 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHhcc
Q 039489 144 NLVDLVRELSACFSR 158 (304)
Q Consensus 144 ~L~~Lv~~l~~~F~~ 158 (304)
.+...|..+...|+-
T Consensus 158 ~fa~~vl~~a~~~gV 172 (351)
T 2wam_A 158 RFITAVRLLAERLGV 172 (351)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCC
Confidence 344444445554443
No 422
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=31.41 E-value=63 Score=23.92 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 273 EEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 273 ~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
+.|++-|.+|.++...||.+...|+.+
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666666666666543
No 423
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=31.04 E-value=2e+02 Score=22.88 Aligned_cols=28 Identities=11% Similarity=0.237 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 039489 242 MVHADITGMRKAREVEVEGLFSTQALLR 269 (304)
Q Consensus 242 kl~~el~~l~~t~~ae~e~l~~~q~eL~ 269 (304)
=|+.||+.|+...+...........+|+
T Consensus 36 PL~~ELeRLr~~~d~~~K~HE~kklqLk 63 (115)
T 3vem_A 36 PFLHELEKLRRESENSKKTFEEKKSILK 63 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333333333
No 424
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=30.84 E-value=1.8e+02 Score=22.40 Aligned_cols=16 Identities=31% Similarity=0.520 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 039489 273 EEIDRGLKELQDEREG 288 (304)
Q Consensus 273 ~~l~~~I~~L~~E~~e 288 (304)
++++++|+.|++|..|
T Consensus 81 ~el~~~I~~LrqEl~~ 96 (98)
T 4fm3_A 81 GELDKSLKRLRKQLGE 96 (98)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcC
Confidence 3555566666655543
No 425
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=30.48 E-value=2.1e+02 Score=28.28 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 039489 281 ELQDEREGLEQQLQIV 296 (304)
Q Consensus 281 ~L~~E~~eLe~~l~~l 296 (304)
.++++.++|++.+..+
T Consensus 583 ~~~~~~~~l~~~~~~~ 598 (605)
T 4b9q_A 583 AIEAKMQELAQVSQKL 598 (605)
T ss_dssp HHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555555544444
No 426
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=30.28 E-value=1.5e+02 Score=21.18 Aligned_cols=26 Identities=12% Similarity=-0.043 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 232 KRNAVNKLVEMVHADITGMRKAREVE 257 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t~~ae 257 (304)
.+..+....+.++..+..|....+.+
T Consensus 17 ~A~~~~~~~~~i~~~l~~L~~~v~~L 42 (99)
T 3zbh_A 17 VARQYNVESSNVTELIARLDQMSHTL 42 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544443
No 427
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=30.04 E-value=1.4e+02 Score=22.93 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 039489 253 AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDI 302 (304)
Q Consensus 253 t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~ 302 (304)
+.+.+...|...+.-|...+.+++++-+++.+.++.+ ..++.|....+|
T Consensus 3 ~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~-E~i~vLk~Qv~I 51 (94)
T 3jsv_C 3 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM-ETVPVLKAQADI 51 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
No 428
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=29.79 E-value=80 Score=25.56 Aligned_cols=40 Identities=13% Similarity=0.198 Sum_probs=22.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 256 VEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQI 295 (304)
Q Consensus 256 ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~ 295 (304)
+..+-+.+..++|+++.++|++.++.|+.+.+.+++.++.
T Consensus 95 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 134 (148)
T 3gpv_A 95 HRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444455777777777777777777777777666543
No 429
>3b8o_A Lipopolysaccharide biosynthesis protein WZZE; bacterial polysaccharide CO-polymerase, inner MEM lipopolysaccharide biosynthesis, membrane; 2.40A {Escherichia coli} SCOP: d.58.60.1
Probab=29.77 E-value=2e+02 Score=25.55 Aligned_cols=18 Identities=11% Similarity=0.041 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039489 230 VFKRNAVNKLVEMVHADI 247 (304)
Q Consensus 230 ~~r~s~lsal~dkl~~el 247 (304)
..++.-|.-+.++.+.++
T Consensus 120 ~lL~~YI~~v~~~~~~~l 137 (265)
T 3b8o_A 120 NLLRQYVAFASQRAASHL 137 (265)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555555
No 430
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=29.64 E-value=1.7e+02 Score=23.53 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 039489 278 GLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 278 ~I~~L~~E~~eLe~~l~~l~~ 298 (304)
+|..+.+|.+.|+..|+.|..
T Consensus 37 ~i~qf~~E~~~l~k~I~~lk~ 57 (123)
T 2lf0_A 37 KYAELEKEKATLEAEIARLRE 57 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666667666666643
No 431
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=29.60 E-value=1.3e+02 Score=22.80 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 039489 279 LKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 279 I~~L~~E~~eLe~~l~~l~ 297 (304)
.+.++++.++|++.+..+.
T Consensus 56 ~~~i~~~~~~L~~~~~~i~ 74 (113)
T 1ud0_A 56 KEEFEHQQKELEKVCNPII 74 (113)
T ss_dssp HHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566666665555443
No 432
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=29.60 E-value=2.6e+02 Score=23.80 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFS----TQALLRRREEEIDRGLKELQDER 286 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~----~q~eL~~~~~~l~~~I~~L~~E~ 286 (304)
+.+..+..+--+..+|+...+.+..+.+ .+.+.++.++++++.-.+.-.+.
T Consensus 118 ~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~i 172 (185)
T 1eh1_A 118 VRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKA 172 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544444444432 23555555555555544443333
No 433
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=29.58 E-value=1.6e+02 Score=21.14 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 233 RNAVNKLVEMVHADITGMRKAREVE 257 (304)
Q Consensus 233 ~s~lsal~dkl~~el~~l~~t~~ae 257 (304)
...|....+.++..|.+|....+.+
T Consensus 14 a~~~~~~~~~i~~~l~~l~~~v~~l 38 (94)
T 3fav_B 14 ASAIQGNVTSIHSLLDEGKQSLTKL 38 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544444
No 434
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=29.45 E-value=70 Score=30.66 Aligned_cols=26 Identities=38% Similarity=0.532 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 274 EIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 274 ~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
++...++.|+++.++||..+..+.++
T Consensus 72 ~l~~~~~~~~~~~~~~~~~~~~~~~~ 97 (425)
T 2dq3_A 72 EIQNRVKELKEEIDRLEEELRKVEEE 97 (425)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566666666666666665543
No 435
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.22 E-value=79 Score=30.40 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=13.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 254 REVEVEGLFSTQALLRRREEEIDRGLKELQDE 285 (304)
Q Consensus 254 ~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E 285 (304)
.+.+++-|..-+..|+.+...+++.+..+++|
T Consensus 54 le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee 85 (428)
T 4b4t_K 54 LEKEYELLTLQEDYIKDEQRHLKRELKRAQEE 85 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444433333344444444444444444443
No 436
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=29.17 E-value=6.6 Score=31.18 Aligned_cols=30 Identities=17% Similarity=0.421 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 267 LLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 267 eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
+|+.+...|..-++.|..|.++|.++++.+
T Consensus 62 ~LE~e~~~L~~e~e~L~~En~~l~~E~~~l 91 (107)
T 3a5t_A 62 ELEKQKAELQQEVEKLASENASMKLELDAL 91 (107)
T ss_dssp HHHHHHTTTSSTTTTTTSTTSHHHHTTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444333
No 437
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=29.00 E-value=2.1e+02 Score=29.39 Aligned_cols=36 Identities=8% Similarity=0.124 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039489 265 QALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNS 300 (304)
Q Consensus 265 q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~ 300 (304)
+.++++++..|++++..|..++.++-..+.++....
T Consensus 189 ~~~~~~~~~~lq~~~~~l~~~R~~~~~k~~~~l~~~ 224 (683)
T 1yvl_A 189 KSDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVT 224 (683)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777778899999999999988887776654433
No 438
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=28.85 E-value=2.8e+02 Score=27.14 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 039489 277 RGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 277 ~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
.+|+.|+.-.+.+.+.|+.|+.
T Consensus 163 ~~i~~l~~~~~~~~~~i~~l~~ 184 (461)
T 3ghg_B 163 TNLRVLRSILENLRSKIQKLES 184 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 439
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=28.55 E-value=85 Score=26.24 Aligned_cols=28 Identities=11% Similarity=0.220 Sum_probs=15.7
Q ss_pred ChHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 039489 226 DQTEVFKRNAV-NKLVEMVHADITGMRKA 253 (304)
Q Consensus 226 ~a~E~~r~s~l-sal~dkl~~el~~l~~t 253 (304)
.+.++++.+-+ .++..+|...++++...
T Consensus 46 ~~v~ql~~sel~qel~~~l~~~ld~l~~~ 74 (165)
T 1gs9_A 46 QVQEELLSSQVTQELRALMDETMKELKAY 74 (165)
T ss_dssp HHHHHHHSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666655 55555555555555443
No 440
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=28.53 E-value=1.1e+02 Score=29.50 Aligned_cols=56 Identities=20% Similarity=0.147 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQ 291 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~ 291 (304)
|..++++...-++.|-...+.-+++|.++|.++.+-+++..+.+-.|+++-..+-+
T Consensus 74 l~~l~~~~~~~i~sLp~~v~~rI~aLk~lQ~e~~~le~ef~~ev~eLE~Ky~~~~~ 129 (417)
T 2ayu_A 74 LGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYK 129 (417)
T ss_dssp TTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555666666667777888888888777777777777777777665543
No 441
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=28.46 E-value=1.2e+02 Score=19.61 Aligned_cols=30 Identities=23% Similarity=0.237 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 265 QALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 265 q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
-+||++|..+|+..-+-|+=.++|||=.+.
T Consensus 12 iqeleernaelknlkehlkfakaelefela 41 (46)
T 3he4_B 12 IQELEERNAELKNLKEHLKFAKAELEFELA 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHhHHHHHHHHHHHHHHHHH
Confidence 366777777777777777777777776553
No 442
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=28.42 E-value=2.8e+02 Score=23.65 Aligned_cols=53 Identities=15% Similarity=0.198 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFS----TQALLRRREEEIDRGLKELQDEREG 288 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~----~q~eL~~~~~~l~~~I~~L~~E~~e 288 (304)
+.+..+..+--+..+|+...+.+..+.+ .+.+.++.++++++.-.+.-.+.++
T Consensus 117 ~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~ 173 (185)
T 1is1_A 117 VRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDE 173 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555444444444444444332 2366666666666655444444433
No 443
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=28.35 E-value=1.3e+02 Score=26.89 Aligned_cols=8 Identities=25% Similarity=0.571 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 039489 275 IDRGLKEL 282 (304)
Q Consensus 275 l~~~I~~L 282 (304)
+++.+++|
T Consensus 39 ne~sL~dL 46 (233)
T 2yko_A 39 NEQSLQEI 46 (233)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 444
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=28.28 E-value=1.8e+02 Score=21.34 Aligned_cols=42 Identities=24% Similarity=0.196 Sum_probs=23.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 256 VEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 256 ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
.||..|...-.--.+.-++|++.|-.|.-|..-|++.++.+.
T Consensus 32 ~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 32 QEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 334333333333334456777777777777777777776654
No 445
>3gaa_A Uncharacterized protein TA1441; the protein with unknown function from thermoplasma acidophi structural genomics,PSI, MCSG; 2.70A {Thermoplasma acidophilum}
Probab=28.26 E-value=93 Score=27.53 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
.+|.++-+++++.|++|.++.++.+
T Consensus 217 ~~L~e~Ae~~e~~i~~l~e~~~~~~ 241 (252)
T 3gaa_A 217 DLLEEQVKALDEQIKKIEEQYKELQ 241 (252)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677777777777777766666543
No 446
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=28.23 E-value=1.1e+02 Score=28.99 Aligned_cols=37 Identities=16% Similarity=0.085 Sum_probs=24.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 253 AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGL 289 (304)
Q Consensus 253 t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eL 289 (304)
..+.-+++|..+|.++.+-+++..+.+-+|++|-..+
T Consensus 50 ~v~~rI~aLk~lQ~E~~~le~ef~eEv~~LE~KY~kl 86 (359)
T 3fs3_A 50 EQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDL 86 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567777777777777777777777777665544
No 447
>3t98_A Nuclear pore complex protein NUP54; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus}
Probab=28.16 E-value=1.4e+02 Score=20.38 Aligned_cols=26 Identities=15% Similarity=0.369 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 264 TQALLRRREEEIDRGLKELQDEREGL 289 (304)
Q Consensus 264 ~q~eL~~~~~~l~~~I~~L~~E~~eL 289 (304)
+++=|+..++-+...+..+++-.+.|
T Consensus 23 ik~~L~~QQ~g~~~Li~ivk~DleDL 48 (51)
T 3t98_A 23 IKQHLKQQQEGLSHLISIIKDDLEDI 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 34444444445555555555544444
No 448
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=28.14 E-value=2.3e+02 Score=25.36 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=12.0
Q ss_pred EEecccccccCcccceeE
Q 039489 75 ADGTVPMPFQGVTYNIPV 92 (304)
Q Consensus 75 L~GtIPi~y~g~~ynIPi 92 (304)
-.+.+|--|+|..-.|||
T Consensus 69 ~~~~~pSLFQGFeAsLPi 86 (242)
T 3uux_B 69 ASKKETSLFQGFKSYLPI 86 (242)
T ss_dssp ---CCCCHHHHHHHHHHH
T ss_pred cCCCCcchhhccccccHH
Confidence 366788889988777774
No 449
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=28.13 E-value=2.1e+02 Score=26.14 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 268 LRRREEEIDRGLKELQDEREGLEQ 291 (304)
Q Consensus 268 L~~~~~~l~~~I~~L~~E~~eLe~ 291 (304)
|-.+.+-.+.-|++++.|++++.+
T Consensus 433 ~~~~~~~a~~LL~ri~~er~~~~~ 456 (464)
T 2y7c_A 433 LISGENSAAALLEKIKAERAASGG 456 (464)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHhhccc
Confidence 334456678888888888877643
No 450
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=28.09 E-value=1.3e+02 Score=19.74 Aligned_cols=45 Identities=18% Similarity=0.250 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 239 LVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDERE 287 (304)
Q Consensus 239 l~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~ 287 (304)
++.++..|+..+ +.|.|+|.+-.---+.--.-|++.|..|+++.+
T Consensus 4 lvaqlenevasl----enenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 4 LVAQLENEVASL----ENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh----hcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444 344444444332222223345555555555543
No 451
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A {Enterobacteria phage HK97} PDB: 3qpr_A
Probab=28.04 E-value=12 Score=35.23 Aligned_cols=48 Identities=19% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 249 GMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 249 ~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
+..+.+.+|++.......+++..-++++..|.+|+++..+||+.+.+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 67 (385)
T 3p8q_A 20 QLFDAQKAEIESTGQVSKQLQSDLMKVQEELTKSGTRLFDLEQKLASG 67 (385)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 333333344444444445555555555566666666666666655443
No 452
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=28.00 E-value=3.1e+02 Score=24.12 Aligned_cols=66 Identities=9% Similarity=0.092 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 039489 231 FKRNAVNKLVEMVHADITGMRKA-------REVEVEGLFSTQALLRRREE----EIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 231 ~r~s~lsal~dkl~~el~~l~~t-------~~ae~e~l~~~q~eL~~~~~----~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
|...+|..++.++.-|.+-+.+. ...-.+++.+-+.||++.+. ...+.++.+..+..||+.=++.-
T Consensus 98 f~~elI~pLE~k~e~D~k~i~~~~K~y~~e~k~~~~~leK~~~elkK~~rksqk~~~k~~e~v~~~q~el~~f~~~s 174 (222)
T 3ok8_A 98 FHGDLLQHMEKNTKLDMQFIKDSCQHYEIEYRHRAANLEKCMSELWRMERKRDKNAREMKESVNRLHAQMQAFVSES 174 (222)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccChHHHHHHHHHHHhHHHHHHHHH
Confidence 34456666666666665554432 23334455556666655533 22334556666666666655543
No 453
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=27.86 E-value=2.8e+02 Score=23.60 Aligned_cols=52 Identities=17% Similarity=0.205 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFS----TQALLRRREEEIDRGLKELQDERE 287 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~----~q~eL~~~~~~l~~~I~~L~~E~~ 287 (304)
+.+..+..+--+..+|+...+.+..+.+ .+.+.++.++++++.-.+.-.+.+
T Consensus 117 ~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id 172 (185)
T 1dd5_A 117 AKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLD 172 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544444444433 235666666666655444444433
No 454
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=27.75 E-value=1.9e+02 Score=26.74 Aligned_cols=52 Identities=13% Similarity=0.133 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH-HH--------HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 248 TGMRKAREVEVEGLFSTQALLRR-RE--------EEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 248 ~~l~~t~~ae~e~l~~~q~eL~~-~~--------~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
.++..+..-++..+.++.+.+.+ =. .+=+..|..+.+++.++++++..+..+
T Consensus 237 ~e~~a~~afd~qk~qRl~q~~~~fv~~hl~vaF~~dPe~~l~~~~~~~~~~~r~l~~~~~~ 297 (302)
T 3ibp_A 237 SERFATLSFDVQKTQRLHQAFSRFIGSHLAVAFESDPEAEIRQLNSRRVELERALSNHEND 297 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSSCCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444555554444444 11 123447888888999999888766554
No 455
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=27.71 E-value=46 Score=25.47 Aligned_cols=12 Identities=17% Similarity=0.293 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDR 277 (304)
Q Consensus 266 ~eL~~~~~~l~~ 277 (304)
.|+.+|+..+..
T Consensus 68 ~EI~~Rk~~v~~ 79 (95)
T 2c5k_T 68 EDVSGREAQVKN 79 (95)
T ss_dssp CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555554433
No 456
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=27.59 E-value=2e+02 Score=21.66 Aligned_cols=29 Identities=21% Similarity=0.325 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
.+|.++-+.+++.|..|+.+.++|...++
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555556666666666654444
No 457
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=27.49 E-value=2.9e+02 Score=23.55 Aligned_cols=51 Identities=12% Similarity=0.185 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFS----TQALLRRREEEIDRGLKELQDER 286 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~----~q~eL~~~~~~l~~~I~~L~~E~ 286 (304)
+.+..+..+--+..+|+...+.+..+.+ .+.+.++.++++++.-.+.-.+.
T Consensus 117 ~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~i 171 (185)
T 1ise_A 117 VRGEAEQARVAVRNVGRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKI 171 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444444444433 23566666666665544444333
No 458
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=27.48 E-value=1.7e+02 Score=24.21 Aligned_cols=16 Identities=6% Similarity=-0.062 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 039489 280 KELQDEREGLEQQLQI 295 (304)
Q Consensus 280 ~~L~~E~~eLe~~l~~ 295 (304)
+..+..+.+++..++.
T Consensus 76 easr~akk~~ea~la~ 91 (146)
T 2xnx_M 76 EINRNLLGNAKLELDQ 91 (146)
T ss_dssp HTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHH
Confidence 3333333334333333
No 459
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=27.33 E-value=2.3e+02 Score=22.46 Aligned_cols=75 Identities=20% Similarity=0.262 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------------HHHHHHHHHHHHHHHHHH------------
Q 039489 228 TEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFS--------------TQALLRRREEEIDRGLKE------------ 281 (304)
Q Consensus 228 ~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~--------------~q~eL~~~~~~l~~~I~~------------ 281 (304)
+|+.--..|..+...+ ..+....++.++|++++.+ +..+++.-.+.+-++++.
T Consensus 5 eeE~~lK~L~~veksv-~~~~kkl~~~~~el~~iekGFL~kel~~eal~kldKrik~~~E~~MK~LE~lDsl~i~e~~~~ 83 (114)
T 1hx1_B 5 QEEVELKKLKHLEKSV-EKIADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQFMKILEEIDTLILPENFKD 83 (114)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCCCTTCHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCChhHHH
Confidence 3443333333333333 4444445555555555544 334444444555555543
Q ss_pred HHHHHHHHHHHHHHHhhccccc
Q 039489 282 LQDEREGLEQQLQIVLMNSDIL 303 (304)
Q Consensus 282 L~~E~~eLe~~l~~l~~~~~~~ 303 (304)
.+.+++.|=+.||.++...|-|
T Consensus 84 ~R~kRK~lV~~iQ~~l~~cD~l 105 (114)
T 1hx1_B 84 SRLKRKGLVKKVQAFLAECDTV 105 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 4567777777888777777654
No 460
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=27.25 E-value=1.3e+02 Score=30.46 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 267 LLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 267 eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
++++.+..+++++..|.+++.|+-..+..+...
T Consensus 69 ~~~~~~~~l~~~~~~l~~~R~e~~~k~~~~l~~ 101 (596)
T 1bg1_A 69 VTRQKMQQLEQMLTALDQMRRSIVSELAGLLSA 101 (596)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778889999988888887766665443
No 461
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=27.23 E-value=2.8e+02 Score=23.40 Aligned_cols=30 Identities=3% Similarity=0.318 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 267 LLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 267 eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
+|..-+++|+..++......-+||+.+..|
T Consensus 107 ~l~~sk~~L~e~L~~q~~~~relERemnsL 136 (170)
T 3l4q_C 107 EIHESRTKLEQELRAQASDNREIDKRMNSL 136 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445555555555555555555555544
No 462
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=27.12 E-value=44 Score=29.89 Aligned_cols=37 Identities=5% Similarity=-0.110 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 039489 231 FKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALL 268 (304)
Q Consensus 231 ~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL 268 (304)
+|..++.. .+.+..+.+++..+.+++.+.+++++++|
T Consensus 135 FRE~~~~~-~~e~~~~~e~~~~~i~ql~~En~~le~~I 171 (250)
T 2ve7_C 135 FREACRET-YMEFLWQYKSSADKMQQLNAAHQEALMKL 171 (250)
T ss_dssp HHHHHHHH-HHHHHHHTTHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555553 34444444444444444444444445333
No 463
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=27.01 E-value=2.3e+02 Score=22.22 Aligned_cols=20 Identities=10% Similarity=-0.002 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 039489 241 EMVHADITGMRKAREVEVEG 260 (304)
Q Consensus 241 dkl~~el~~l~~t~~ae~e~ 260 (304)
...+.++++|..+.+++...
T Consensus 14 ~~~~~ei~~L~~ei~eLk~~ 33 (106)
T 4e61_A 14 TKSQETIGSLNEEIEQYKGT 33 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555444444443333
No 464
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=27.00 E-value=1.2e+02 Score=22.45 Aligned_cols=25 Identities=16% Similarity=0.120 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
++|..+.++++..|+.+..+=++|+
T Consensus 59 ~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 59 QKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555544444554
No 465
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=26.70 E-value=1.5e+02 Score=19.87 Aligned_cols=44 Identities=16% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 256 VEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 256 ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
+.-|...+++.-|+.=+.++-+.+.+.+.-...|.++|..|+.+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 466
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=26.65 E-value=1.4e+02 Score=25.79 Aligned_cols=49 Identities=6% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 245 ADITGMRKA-REVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQL 293 (304)
Q Consensus 245 ~el~~l~~t-~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l 293 (304)
.+++++.+. .++..+-|.+..++|+++.++|++.++.|++..+.++...
T Consensus 67 ~~i~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~ 116 (278)
T 1r8e_A 67 EEMKKAQDLEMEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQM 116 (278)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 467
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=26.46 E-value=2e+02 Score=22.01 Aligned_cols=52 Identities=15% Similarity=0.300 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 227 QTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ--ALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 227 a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q--~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
.+|..|+..|.++..| +.++| .-=+-+-.+|++.|++|=+|+...|.+|-.|
T Consensus 25 ~AekWR~qvikEIs~K------------------v~~Iqn~~L~E~~IRdLNDEINkL~rEK~~WE~rI~eL 78 (92)
T 1x4t_A 25 KAEKWRRQIIGEISKK------------------VAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKEL 78 (92)
T ss_dssp HHHHHHHHHHHHHHHH------------------HHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------------------HHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 468
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=26.46 E-value=2.1e+02 Score=21.72 Aligned_cols=61 Identities=16% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFST-Q-ALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~~-q-~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
++++++....+.+.+......-++.+... . .+=++--.++++.|++.++=.+.+|-++..+
T Consensus 13 mSelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 13 SSEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 469
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=26.42 E-value=1.6e+02 Score=20.40 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 039489 235 AVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRR 270 (304)
Q Consensus 235 ~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~ 270 (304)
++..-+.-|+.|.+.+.++.++|-.+-.+++.-+++
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk 49 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRK 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 470
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=26.25 E-value=2.3e+02 Score=25.44 Aligned_cols=64 Identities=6% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 236 VNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRRE-------------EEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 236 lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~-------------~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
+....++++++++.+..+.+.....+...+.++++.+ ++.+..+...+.+.+.++.++..++.+
T Consensus 68 ~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~ 144 (369)
T 4dk0_A 68 QINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIE 144 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 471
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=26.22 E-value=94 Score=29.32 Aligned_cols=65 Identities=11% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489 237 NKLVEMVHADITGMRKAREVEVEGLFSTQALLRRR-EEEIDRGLKELQDEREGLEQQLQIVLMNSD 301 (304)
Q Consensus 237 sal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~-~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~ 301 (304)
.++.+.+...++++..-...--+++.+.++++++- ++..++.+.++++-.+++++.|..|....+
T Consensus 338 ~~i~~~~~~~l~~~~~G~~t~eeal~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 403 (463)
T 2xz3_A 338 SAFWYAVRTAVINAASGRQTVDAALAAAQTNAAALSHQRLTSLIHVLEQDQQRLITAINQTHYNLL 403 (463)
T ss_dssp HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 472
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=26.14 E-value=1.6e+02 Score=23.62 Aligned_cols=50 Identities=16% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHH
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEGLFSTQ-------ALLRRREEEIDRGLKELQ 283 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q-------~eL~~~~~~l~~~I~~L~ 283 (304)
+...++.+-|++++.-|+..-.+.+..+..+| .++++=+-+++=-|+.++
T Consensus 18 n~y~qvsedLrrrIe~LkrKV~~Qvq~i~~Lq~nVrdQvveMkRLEVDIDIKiRsCK 74 (119)
T 1lwu_A 18 VRYSEVLRELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRVEVDIDVALRACK 74 (119)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
No 473
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=26.10 E-value=88 Score=22.47 Aligned_cols=40 Identities=8% Similarity=0.097 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 259 EGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 259 e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
+.+.++|++|.+=+..+.++|+++=+.-+.|+...++...
T Consensus 8 d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~ 47 (74)
T 2nps_A 8 DKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSES 47 (74)
T ss_dssp SSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
No 474
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=26.07 E-value=1.8e+02 Score=20.82 Aligned_cols=51 Identities=12% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 039489 252 KAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDI 302 (304)
Q Consensus 252 ~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~ 302 (304)
++.+.-+|.+.+-=.||++++.....-|.+.+++..||..++-++..+-++
T Consensus 6 ~~H~~~Ld~i~~el~eLq~~~~~~~aki~e~krkl~eLsHRiLkvlv~QE~ 56 (65)
T 3t97_B 6 KQHQTRLDIISEDISELQKNQTTTMAKIAQYKRKLMDLSHRTLQVLIKQEI 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
No 475
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=26.04 E-value=1.6e+02 Score=23.73 Aligned_cols=47 Identities=13% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 253 AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 253 t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
+.++-++-+.+=-..|+..-+++++.+..++++...++..++.+...
T Consensus 95 ~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 95 SIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=25.93 E-value=2.5e+02 Score=22.40 Aligned_cols=72 Identities=11% Similarity=0.048 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 227 QTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ---------ALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 227 a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q---------~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
..|+-|=+-..+..+....+|.+.+......-+.+.+++ .+-+.--.+.++.+.+|+.+.++.++.|..-.
T Consensus 23 ~kE~qrynqeka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk~~~~~Ld~eI~~qe~iI~nFe 102 (119)
T 2avr_X 23 NQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKKLEAEMEQQKAVISDFE 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h
Q 039489 298 M 298 (304)
Q Consensus 298 ~ 298 (304)
.
T Consensus 103 ~ 103 (119)
T 2avr_X 103 K 103 (119)
T ss_dssp H
T ss_pred H
No 477
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=25.91 E-value=1.2e+02 Score=27.70 Aligned_cols=65 Identities=14% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHh
Q 039489 233 RNAVNKLVEMVHADITGMRKAREVE-------VEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQ---LQIVL 297 (304)
Q Consensus 233 ~s~lsal~dkl~~el~~l~~t~~ae-------~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~---l~~l~ 297 (304)
.+.+++...+++.=++.+....... ++.+.+.=.++.++-.++++.+++|+++.++|++. ++.|.
T Consensus 62 ~~~~~~~~~k~~~~~~~L~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~ 136 (357)
T 3rrk_A 62 LKRWEAVVSQAEQSLTVVGLATVPSSKPFTGSLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLA 136 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCCSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHhcccccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
No 478
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=25.90 E-value=42 Score=24.55 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 039489 240 VEMVHADITGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREG 288 (304)
Q Consensus 240 ~dkl~~el~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~e 288 (304)
.+.+...+..+.++.+-..+-|...+ +.|...-.-|++.|++|++..+.
T Consensus 17 ~eel~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlERnqeR 68 (71)
T 3bbp_D 17 KEELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQER 68 (71)
T ss_dssp ------------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhHhh
No 479
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=25.85 E-value=1.9e+02 Score=21.02 Aligned_cols=74 Identities=19% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHH--HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 039489 229 EVFKRNAVNKLVEMVHADITGMRKAREVEVEGL-FSTQ--ALLRRREE---EIDRGLKELQDEREGLEQQLQIVLMNSDI 302 (304)
Q Consensus 229 E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l-~~~q--~eL~~~~~---~l~~~I~~L~~E~~eLe~~l~~l~~~~~~ 302 (304)
+.-++..=+.++-+=+..|.+.+....+.+-+. .++. +-|..--+ .|+..+..|+.|.++|+..++....-.|+
T Consensus 3 ~~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~~~~~~ 82 (82)
T 1am9_A 3 RGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSKSLKDL 82 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
No 480
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=25.83 E-value=1.7e+02 Score=22.24 Aligned_cols=58 Identities=10% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 233 RNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ-ALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 233 ~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q-~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
|...-.-+++.-.|.+++.++.+-|+.++-..+ ..+..+-...++.|.+|+++.+.+.
T Consensus 36 rk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 36 KKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=25.68 E-value=1.6e+02 Score=23.20 Aligned_cols=43 Identities=16% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 254 REVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 254 ~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
.++|.+++.+--...+++-++|++.+.+|+++.++.+..++++
T Consensus 2 ~~~e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~ 44 (125)
T 1joc_A 2 NQDERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQEL 44 (125)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=25.67 E-value=95 Score=23.48 Aligned_cols=34 Identities=9% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 039489 271 REEEIDRGLKELQDEREGLEQQLQIVLMNSDILE 304 (304)
Q Consensus 271 ~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~~ 304 (304)
..+.|++-++.|+++.++|++.++.+....+.++
T Consensus 76 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~ 109 (109)
T 1r8d_A 76 RKAALQSQKEILMKKKQRMDEMIQTIDRTLLSVD 109 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 483
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=25.58 E-value=3.6e+02 Score=24.07 Aligned_cols=80 Identities=14% Similarity=0.143 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 225 EDQTEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ----------ALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 225 ~~a~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q----------~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
++......-....+-.+.++++++......+.....+.+.+ ++|.+-+.+++..-.+++.-+++|++.-.
T Consensus 64 d~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~ 143 (369)
T 4dk0_A 64 DSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEI 143 (369)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhcccccC
Q 039489 295 IVLMNSDILE 304 (304)
Q Consensus 295 ~l~~~~~~~~ 304 (304)
.+.....-|+
T Consensus 144 ~l~~a~~~l~ 153 (369)
T 4dk0_A 144 EVNTAETNLG 153 (369)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHhh
No 484
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=25.58 E-value=2.4e+02 Score=23.90 Aligned_cols=57 Identities=16% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 039489 232 KRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQ----ALLRRREEEIDRGLKELQDEREG 288 (304)
Q Consensus 232 r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q----~eL~~~~~~l~~~I~~L~~E~~e 288 (304)
+...+....+++..+++++.+..++.-+....++ +-+++..+.+++.++++-.|.++
T Consensus 123 ~~~~l~~~L~~l~~~l~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 183 (202)
T 2p4w_A 123 KMRELAEFLHELNERIREIIEEKRELEEARILIETYIENTMRRLAEENRQIIEEIFRDIEK 183 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 485
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=25.52 E-value=2.2e+02 Score=21.76 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 039489 242 MVHA--DITGMRKAREVEVEGLFSTQALLRRREE----EIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 242 kl~~--el~~l~~t~~ae~e~l~~~q~eL~~~~~----~l~~~I~~L~~E~~eLe~~l~ 294 (304)
+++. |.+....+.=.||+.++.+=-+|+..+. +.++.|.+|+.|.+.....++
T Consensus 34 k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r~~q~~ 92 (92)
T 3vp9_A 34 RLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQRDHQIA 92 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
No 486
>1vf6_A PALS-1, PALS1-associated tight junction protein; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Homo sapiens} SCOP: a.194.1.1
Probab=25.52 E-value=1.2e+02 Score=22.77 Aligned_cols=50 Identities=10% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 238 KLVEMVHADITGMRKAREVEVEGLFS--TQALLRRREEEIDRGLKELQDERE 287 (304)
Q Consensus 238 al~dkl~~el~~l~~t~~ae~e~l~~--~q~eL~~~~~~l~~~I~~L~~E~~ 287 (304)
.+.||+|..|++.-+..++|.=++.+ +|.=|-..-=-|...|+.|+++..
T Consensus 7 q~leRLQ~KL~erGd~s~~ekLs~lk~~LqSPLF~qILtlQqSikqLk~Qvn 58 (83)
T 1vf6_A 7 QVLDRLKMKLQEKGDTSQNEKLSMFYETLKSPLFNQILTLQQSIKQLKGQLN 58 (83)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccchHhHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhc
No 487
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.50 E-value=2.1e+02 Score=26.85 Aligned_cols=56 Identities=11% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcc
Q 039489 245 ADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDE---REGLEQQLQIVLMNS 300 (304)
Q Consensus 245 ~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E---~~eLe~~l~~l~~~~ 300 (304)
.++++.-+..+++.....++|++....+.+.++..++|++| +..||-.|.++..+.
T Consensus 3 ~~~~~~~~e~~~~~~~~~~vq~kA~~~E~~Yn~~~dKmeqE~lrRRkLENSIdElKG~I 61 (333)
T 4etp_B 3 SEIAALEKEIAALEKEIAALEKEISKQEKFYNDTYNTVCKELLRSRRLENSIIEQKGTM 61 (333)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCcE
No 488
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=25.45 E-value=1.9e+02 Score=20.81 Aligned_cols=66 Identities=12% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEGLFSTQ--------ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q--------~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
..|..+..+++....++......+...+..++ ..-....++++..++++.+..+++.+.|.....+
T Consensus 11 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~ 84 (98)
T 3gwk_C 11 EELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADI 84 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=25.43 E-value=2.3e+02 Score=24.73 Aligned_cols=46 Identities=11% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 246 DITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQ 291 (304)
Q Consensus 246 el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~ 291 (304)
+++.+....+++.+.+..++.++.+-+++.+..-+++++|++++.+
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~ 105 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEK 105 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=25.36 E-value=4.4e+02 Score=26.09 Aligned_cols=74 Identities=9% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039489 228 TEVFKRNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSD 301 (304)
Q Consensus 228 ~E~~r~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~ 301 (304)
.|..+.+-=.++.++...+|+++++-...+.+.-..-+.|.+-=+..++...+-.++|.+.|.+....|....+
T Consensus 108 ~d~~~~khn~~I~~k~g~~l~~v~~~~~~~~~~e~~e~~q~~~LekAl~s~~~i~~~e~~~l~~L~~AL~kE~~ 181 (526)
T 3iyk_A 108 NELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIG 181 (526)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
No 491
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=25.25 E-value=2.1e+02 Score=27.01 Aligned_cols=68 Identities=16% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 229 EVFKRNAVNKLVEMVHADITGMRK--AREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 229 E~~r~s~lsal~dkl~~el~~l~~--t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
+..+...+.+-...|+..++...+ +..++++.+..+-. =..-.+.++..+..|+.+.++||..|..++
T Consensus 27 d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~-D~e~~~~a~~e~~~l~~~~~~le~~l~~lL 96 (354)
T 3d5a_X 27 DKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLD-DPELKEMAKAEREALLARKEALEKELERHL 96 (354)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 492
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=25.22 E-value=2.4e+02 Score=21.80 Aligned_cols=63 Identities=14% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 228 TEVFKRNAVNKLVEMVHADI---TGMRKAREVEVEGLFSTQ---ALLRRREEEIDRGLKELQDEREGLE 290 (304)
Q Consensus 228 ~E~~r~s~lsal~dkl~~el---~~l~~t~~ae~e~l~~~q---~eL~~~~~~l~~~I~~L~~E~~eLe 290 (304)
+.+.+.+-|...-|-++.-- ..-+.|...++++|.+-+ .+=.++-++|+..|+.|.++..+..
T Consensus 19 vT~lLq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 19 TTHLLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=25.10 E-value=1.6e+02 Score=19.88 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 266 ALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 266 ~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
..|++-...|-..|..|+.--.++|++|.+|..
T Consensus 7 ~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 7 LRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
No 494
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=25.06 E-value=1.9e+02 Score=20.55 Aligned_cols=66 Identities=8% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039489 234 NAVNKLVEMVHADITGMRKAREVEVEGLFSTQ--------ALLRRREEEIDRGLKELQDEREGLEQQLQIVLMN 299 (304)
Q Consensus 234 s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q--------~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~ 299 (304)
..|.++..+++....++....+++...+..++ ..-....++++..+++|.+...++.+.|.....+
T Consensus 9 ~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~ 82 (97)
T 2vs0_A 9 EEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNSTADA 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=24.99 E-value=1.5e+02 Score=24.42 Aligned_cols=45 Identities=7% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-------------------HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 039489 237 NKLVEMVHADITGMRKA-------------------REVEVEGLFSTQALLRRREEEIDRGLKE 281 (304)
Q Consensus 237 sal~dkl~~el~~l~~t-------------------~~ae~e~l~~~q~eL~~~~~~l~~~I~~ 281 (304)
.+-.++|+.||+.|... .++|-+.-++-|.++++|-..|++.|+.
T Consensus 8 ~~g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~ 71 (158)
T 2p4v_A 8 REGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMEN 71 (158)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhh
No 496
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=24.97 E-value=1.6e+02 Score=22.58 Aligned_cols=63 Identities=10% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039489 235 AVNKLVEMVHADITGMRKAREVEVEGLFSTQ-ALLRRREEEIDRGLKELQDEREGLEQQLQIVL 297 (304)
Q Consensus 235 ~lsal~dkl~~el~~l~~t~~ae~e~l~~~q-~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~ 297 (304)
+|+.-+|.+-.+....+.+.+++.|....-| +||..=++.|-..=..=.+-++.-|++|..|+
T Consensus 18 ~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr 81 (92)
T 3vp9_A 18 AIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLK 81 (92)
T ss_dssp CTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=24.95 E-value=70 Score=21.64 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 261 LFSTQALLRRREEEIDRGLKELQDEREGLEQQLQ 294 (304)
Q Consensus 261 l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~ 294 (304)
|.++|.+-..=...+-.-|.+|....++||++|.
T Consensus 15 L~qmq~kFq~mS~~I~~riDdM~~RIDdLE~si~ 48 (48)
T 3ci9_A 15 LQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNIA 48 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
No 498
>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium}
Probab=24.90 E-value=99 Score=26.83 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039489 241 EMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLM 298 (304)
Q Consensus 241 dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~ 298 (304)
+.....+.......+.-++.+...+++|=.++++|+..+..|+....-|+..+.++++
T Consensus 185 ~~~~~~~~~al~~id~ai~~v~~~ra~lGa~qnrle~~~~~l~~~~~~l~~~~S~i~D 242 (248)
T 2d4x_A 185 EKAAAAIDKTNRGLKNSLNNVLTVRAELGTQLSELSTLDSLGSDRALGQKLQMSNLVD 242 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhc
No 499
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=24.85 E-value=1.9e+02 Score=25.02 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 039489 233 RNAVNKLVEMVHADITGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIVLMNSDILE 304 (304)
Q Consensus 233 ~s~lsal~dkl~~el~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l~~~~~~~~ 304 (304)
++.+.+-.++.+-.++.|-.....+.+.+...++|+++=+++|...=+....-...+.++.+.+.-.-|++|
T Consensus 8 K~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e 79 (190)
T 4emc_A 8 KNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYE 79 (190)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHH
No 500
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary adenylate cyclase 1 receptor-short...; G-protein coupled receptor; HET: MAL; 1.80A {Escherichia coli} PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A*
Probab=24.76 E-value=1e+02 Score=28.88 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039489 248 TGMRKAREVEVEGLFSTQALLRRREEEIDRGLKELQDEREGLEQQLQIV 296 (304)
Q Consensus 248 ~~l~~t~~ae~e~l~~~q~eL~~~~~~l~~~I~~L~~E~~eLe~~l~~l 296 (304)
..+....++-+.|....++-|++=++++++.|..|++|+++..+.++..
T Consensus 343 ~~~~~~~~~~~~G~~t~eeal~~~~~~~~~~l~~l~~e~~~C~~~~~~~ 391 (475)
T 3n94_A 343 YAVRTAVINAASGRQTVDEALKDAQTNAAAEFAIFKKEQAMCLEKIQRA 391 (475)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Done!