BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039490
(423 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 48.5 bits (114), Expect = 7e-06, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 137 EFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASI 190
+ +C ICL++ ++PV T C H+FC C +L + +CP C ++T S+
Sbjct: 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 42.0 bits (97), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 141 CNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASI 190
C ICLD+ + PV CGH FC C Q+ +CP C V +I
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 141 CNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPAC 181
C ICLD+ + PV CGH FC C Q+ +CP C
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 37.0 bits (84), Expect = 0.021, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 141 CNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPAC 181
C++CL+ ++PV+ CGH FC +C + CP C
Sbjct: 18 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 35.8 bits (81), Expect = 0.048, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 136 GEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNV-KECPACNGEVTDASIIP 192
G ++C ICL R+ V T CGH FC +C + + R+ +CP N + + + P
Sbjct: 4 GSKYECPICLMALREAVQTPCGHRFCKACIIK---SIRDAGHKCPVDNEILLENQLFP 58
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 34.7 bits (78), Expect = 0.093, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 139 FDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNV-KECPACNGEVTDASIIP 192
++C ICL R+ V T CGH FC +C + + R+ +CP N + + + P
Sbjct: 19 YECPICLMALREAVQTPCGHRFCKACIIK---SIRDAGHKCPVDNEILLENQLFP 70
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 135 GGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEV 185
G F C IC + +D + CGHL C SC + + + CP C E+
Sbjct: 23 GSTFQLCKICAENDKDVKIEPCGHLMCTSCL--TAWQESDGQGCPFCRCEI 71
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
Query: 132 GAGGGEFFDCNICLDM-------ARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGE 184
GA G C IC+D R V T CGH+FC C + +N CP C +
Sbjct: 1 GAMGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD---SLKNANTCPTCRKK 57
Query: 185 VTDASIIPIY-GNG 197
+ PIY G+G
Sbjct: 58 INHKRYHPIYIGSG 71
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 135 GGEFFDCNICLDM-------ARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTD 187
G C IC+D R V T CGH+FC C + +N CP C ++
Sbjct: 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD---SLKNANTCPTCRKKINH 125
Query: 188 ASIIPIY 194
PIY
Sbjct: 126 KRYHPIY 132
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 141 CNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVK---ECPAC 181
C ICL++ ++PV C H FC +C + RN CP C
Sbjct: 22 CPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVC 65
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 139 FDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNV-KECPACNGEVTDASIIP 192
++C ICL R+ V T CGH FC +C + + R+ +CP N + + + P
Sbjct: 26 YECPICLMALREAVQTPCGHRFCKACIIK---SIRDAGHKCPVDNEILLENQLFP 77
>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger
Protein 183-Like 1
Length = 81
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 139 FDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACN 182
F C IC ++PV+T C H FC SC + +R C C+
Sbjct: 16 FRCFICRQAFQNPVVTKCRHYFCESCALE---HFRATPRCYICD 56
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 33.9 bits (76), Expect = 0.16, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 135 GGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEV 185
G F C IC + +D + CGHL C SC + + CP C E+
Sbjct: 21 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTS--WQESEGQGCPFCRCEI 69
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 33.9 bits (76), Expect = 0.20, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 135 GGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEV 185
G F C IC + +D + CGHL C SC + + CP C E+
Sbjct: 24 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTS--WQESEGQGCPFCRCEI 72
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 33.5 bits (75), Expect = 0.21, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 141 CNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPAC 181
C IC + DPV T C HLFC C + + CP+C
Sbjct: 26 CQICEHILADPVETSCKHLFCRICILRCLKVMGSY--CPSC 64
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 136 GEFFDCNICLDM-------ARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDA 188
G C IC+D R V T CGH+FC C L + +N CP C ++
Sbjct: 1 GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQC---LRDSLKNANTCPTCRKKINHK 57
Query: 189 SIIPIY 194
PIY
Sbjct: 58 RYHPIY 63
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 141 CNICLDMARDPVLTC-CGHLFCWSCFYQLPYAYRNV-KECPACNGE-VTDASIIP 192
C ICLDM ++ + T C H FC C A R+ KECP C + V+ S+ P
Sbjct: 57 CPICLDMLKNTMTTKECLHRFCADCIIT---ALRSGNKECPTCRKKLVSKRSLRP 108
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 135 GGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEV 185
G F C IC + +D + CGHL C SC + + + CP C E+
Sbjct: 335 GSTFQLCKICAENDKDVKIEPCGHLMCTSCL--TAWQESDGQGCPFCRCEI 383
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 140 DCNICLDM-------ARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIP 192
C IC+D R V T CGH+FC C + +N CP C ++ P
Sbjct: 12 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD---SLKNANTCPTCRKKINHKRYHP 68
Query: 193 IY 194
IY
Sbjct: 69 IY 70
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 32.0 bits (71), Expect = 0.71, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 141 CNICLDMARDPVLTC-CGHLFCWSCFYQLPYAYRN-VKECPACNGE-VTDASIIP 192
C ICLDM ++ + T C H FC C A R+ KECP C + V+ S+ P
Sbjct: 37 CPICLDMLKNTMTTKECLHRFCADCIIT---ALRSGNKECPTCRKKLVSKRSLRP 88
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 135 GGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEV 185
G F C IC + +D + CGHL C SC + + CP C E+
Sbjct: 331 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTS--WQESEGQGCPFCRCEI 379
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 135 GGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEV 185
G F C IC + +D + CGHL C SC + + CP C E+
Sbjct: 331 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTS--WQESEGQGCPFCRCEI 379
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 135 GGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEV 185
G F C IC + +D + CGHL C SC + + CP C E+
Sbjct: 329 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTS--WQESEGQGCPFCRCEI 377
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 135 GGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEV 185
G F C IC + +D + CGHL C SC + + CP C E+
Sbjct: 329 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTS--WQESEGQGCPFCRCEI 377
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 137 EFFDCNICLDMARD----PVLTCCGHLFCWSCFYQLPYAYRNVKECPACN 182
E +C IC++ + P L CGH C C +L + N CP C+
Sbjct: 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCS 63
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3 Ubiquitin-
Protein Ligase Uhrf1
Length = 124
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 18/76 (23%)
Query: 137 EFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYR-NVKECPACNGEVTDA------- 188
E F C C ++ P+ T C H C C L ++R V CPAC ++ +
Sbjct: 51 ETFQCICCQELVFRPITTVCQHNVCKDC---LDRSFRAQVFSCPACRYDLGRSYAMQVNQ 107
Query: 189 -------SIIPIYGNG 197
+ P YGNG
Sbjct: 108 PLQTVLNQLFPGYGNG 123
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 140 DCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDA 188
+C IC+D D +L C H FC C + +RN CP C ++T A
Sbjct: 17 ECCICMDGRADLILPC-AHSFCQKCIDKWSDRHRN---CPICRLQMTGA 61
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 140 DCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTD 187
+C ICL PV C H+FC+ C + K C C E+ +
Sbjct: 17 ECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG---KRCALCRQEIPE 61
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 141 CNICLDMARDPVLTC-CGHLFCWSCFYQLPYAYRNV-KECPACNGEV 185
C ICLDM ++ + T C H FC C A R+ KECP C ++
Sbjct: 56 CPICLDMLKNTMTTKECLHRFCADCIIT---ALRSGNKECPTCRKKL 99
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 139 FDCNICLDMARDPVLTCCGHLFCWSC 164
++C ICL R+ V T CGH FC +C
Sbjct: 19 YECPICLMALREAVQTPCGHRFCKAC 44
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 137 EFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIY 194
E+F C I L++ +DPV+ G + S + A K CP + A + P Y
Sbjct: 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGH--KTCPKSQETLLHAGLTPNY 62
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 137 EFFDCNICLDMARDPVLTCCGHLFCWSCF 165
E C ICL++ P+ CGH FC +C
Sbjct: 18 EEVTCPICLELLTQPLSLDCGHSFCQACL 46
>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
Polycomb Group Ring Finger Protein 6
Length = 72
Score = 29.3 bits (64), Expect = 4.8, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 141 CNICLDMARDPV-LTCCGHLFCWSCFYQLPYAYRNVKECPACN 182
C+IC D +T C H FC SC + Y Y N CP CN
Sbjct: 18 CSICKGYLIDATTITECLHTFCKSCIVRHFY-YSN--RCPKCN 57
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 141 CNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEV 185
C +CLD A V CGHL C C L + CP C V
Sbjct: 16 CKVCLDRAVSIVFVPCGHLVCAECAPGL-------QLCPICRAPV 53
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 8/44 (18%)
Query: 141 CNICLDMARDPVLTCCGHL-FCWSCFYQLPYAYRNVKECPACNG 183
C +C+D V CGHL C C L ++CP C G
Sbjct: 298 CKVCMDKEVSVVFIPCGHLVVCQECAPSL-------RKCPICRG 334
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 28.1 bits (61), Expect = 8.9, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 241 EVRIQQFNSIVDAARHQTGSLDLDAAVRSGELEVNDPLL 279
EVRI N AA+ + GS L A R+G LEV LL
Sbjct: 39 EVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL 77
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 28.1 bits (61), Expect = 9.6, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 241 EVRIQQFNSIVDAARHQTGSLDLDAAVRSGELEVNDPLL 279
EVRI N AA+ + GS L A R+G LEV LL
Sbjct: 21 EVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,614,304
Number of Sequences: 62578
Number of extensions: 302359
Number of successful extensions: 750
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 716
Number of HSP's gapped (non-prelim): 46
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)