BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039490
(423 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P93030|RMA2_ARATH E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana GN=RMA2
PE=1 SV=1
Length = 193
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 58/105 (55%), Gaps = 22/105 (20%)
Query: 127 DTKRAGAGGGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKE--------- 177
DT +GG FDCNICLD RDPV+T CGHLFCW C ++ YA N ++
Sbjct: 9 DTTLVDSGGD--FDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKR 66
Query: 178 ----CPACNGEVTDASIIPIYGNGNSNDLQKLKSKESCLKVPPRP 218
CP C +V++A+++PIYG G K+ +S VP RP
Sbjct: 67 EPPKCPVCKSDVSEATLVPIYGRGQ-------KAPQSGSNVPSRP 104
>sp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3
PE=1 SV=1
Length = 243
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 68/150 (45%), Gaps = 22/150 (14%)
Query: 117 LIAKALGIHTDTKRAG-AGGGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAY--- 172
IAK T AG A FDCNICLD A DPV+T CGHLFCW C Y+ +
Sbjct: 19 FIAKQKPNLTTAPTAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSS 78
Query: 173 ----RNVKECPACNGEVTDASIIPIYGNGNSNDLQKLKSKESCLKVPPRPLARRIESVRQ 228
++ CP C +T S++P+YG G S+ SK+ +
Sbjct: 79 VSVDQHQNNCPVCKSNITITSLVPLYGRGMSSPSSTFGSKK--------------QDALS 124
Query: 229 QLVNRRPVSTPIEVRIQQFNSIVDAARHQT 258
+ RRP + + I +S+ + +HQT
Sbjct: 125 TDIPRRPAPSALRNPITSASSLNPSLQHQT 154
>sp|Q99942|RNF5_HUMAN E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1
Length = 180
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Query: 133 AGGGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIP 192
G G F+CNICL+ AR+ V++ CGHL+CW C +Q +ECP C ++ ++P
Sbjct: 19 GGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVP 78
Query: 193 IYGNGNSNDLQKLKSKESCLKVPPRPLARR 222
+YG G+ K ++ LK PPRP +R
Sbjct: 79 LYGRGSQ------KPQDPRLKTPPRPQGQR 102
>sp|Q09463|RNF5_CAEEL RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1
Length = 235
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 52/93 (55%), Gaps = 9/93 (9%)
Query: 139 FDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIYG-NG 197
F+CNICLD A+D V++ CGHLFCW C Q N + CP C + ++PIYG G
Sbjct: 24 FECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQVCPVCKSAIDGNKVVPIYGRGG 83
Query: 198 NSNDLQKLKSKESCLKVPPRPLARRIESVRQQL 230
+S+D +K KVPPRP +R E Q
Sbjct: 84 DSSDPRK--------KVPPRPKGQRSEPPPQSF 108
>sp|Q91YT2|RN185_MOUSE E3 ubiquitin-protein ligase RNF185 OS=Mus musculus GN=Rnf185 PE=2
SV=1
Length = 192
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 8/108 (7%)
Query: 119 AKALGIHTDTKRAGAGGGE--FFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVK 176
+ A G + G GG+ F+CNICLD A+D V++ CGHLFCW C +Q N +
Sbjct: 15 SNAGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQ 74
Query: 177 ECPACNGEVTDASIIPIYGNGNSNDLQKLKSKESCLKVPPRPLARRIE 224
CP C ++ +IP+YG G++ + K PPRP +R E
Sbjct: 75 VCPVCKAGISRDKVIPLYGRGSTGQQDPRE------KTPPRPQGQRPE 116
>sp|Q5M807|RNF5_RAT E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2
SV=1
Length = 180
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 6/84 (7%)
Query: 139 FDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIYGNGN 198
F+CNICL+ AR+ V++ CGHL+CW C +Q + +ECP C ++ ++P+YG G+
Sbjct: 25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVPLYGRGS 84
Query: 199 SNDLQKLKSKESCLKVPPRPLARR 222
K ++ LK PPRP +R
Sbjct: 85 Q------KPQDPRLKTPPRPQGQR 102
>sp|O35445|RNF5_MOUSE E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1
Length = 180
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 6/84 (7%)
Query: 139 FDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIYGNGN 198
F+CNICL+ AR+ V++ CGHL+CW C +Q + +ECP C ++ ++P+YG G+
Sbjct: 25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVPLYGRGS 84
Query: 199 SNDLQKLKSKESCLKVPPRPLARR 222
K ++ LK PPRP +R
Sbjct: 85 Q------KPQDPRLKTPPRPQGQR 102
>sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1
PE=1 SV=1
Length = 252
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 11/94 (11%)
Query: 139 FDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVK---------ECPACNGEVTDAS 189
FDCNICLD +PV+T CGHL+CW C Y+ Y +++V +CP C EV++ +
Sbjct: 39 FDCNICLDCVHEPVITLCGHLYCWPCIYKWIY-FQSVSSENSDQQQPQCPVCKAEVSEKT 97
Query: 190 IIPIYG-NGNSNDLQKLKSKESCLKVPPRPLARR 222
+IP+YG G S + K+ + +P RP + R
Sbjct: 98 LIPLYGRGGQSTKPSEGKAPNLGIVIPQRPPSPR 131
>sp|Q568Y3|RN185_RAT E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus GN=Rnf185
PE=2 SV=1
Length = 192
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 139 FDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIYGNGN 198
F+CNICLD A+D V++ CGHLFCW C +Q N + CP C ++ +IP+YG G+
Sbjct: 37 FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGS 96
Query: 199 SNDLQKLKSKESCLKVPPRPLARRIE 224
+ + K PPRP +R E
Sbjct: 97 TGQQDPRE------KTPPRPQGQRPE 116
>sp|Q96GF1|RN185_HUMAN E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1
SV=1
Length = 192
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 139 FDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIYGNGN 198
F+CNICLD A+D V++ CGHLFCW C +Q N + CP C ++ +IP+YG G+
Sbjct: 37 FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGS 96
Query: 199 SNDLQKLKSKESCLKVPPRPLARRIE 224
+ + K PPRP +R E
Sbjct: 97 TGQQDPRE------KTPPRPQGQRPE 116
>sp|Q5RFK9|RN185_PONAB E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2
SV=1
Length = 192
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 139 FDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIYGNGN 198
F+CNICLD A+D V++ CGHLFCW C +Q N + CP C ++ +IP+YG G+
Sbjct: 37 FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGS 96
Query: 199 SNDLQKLKSKESCLKVPPRPLARRIE 224
+ + K PPRP +R E
Sbjct: 97 TGQQDPRE------KTPPRPQGQRPE 116
>sp|Q5ZIR9|RN185_CHICK E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus GN=RNF185 PE=2
SV=1
Length = 194
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 139 FDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIYGNGN 198
F+CNICLD A+D V++ CGHLFCW C +Q N + CP C ++ +IP+YG G+
Sbjct: 39 FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGS 98
Query: 199 SNDLQKLKSKESCLKVPPRPLARRIE 224
+ + +E K PPRP +R E
Sbjct: 99 TG---QQDPRE---KTPPRPQGQRPE 118
>sp|Q6PC78|RN185_DANRE E3 ubiquitin-protein ligase RNF185 OS=Danio rerio GN=rnf185 PE=2
SV=1
Length = 194
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 139 FDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIYGNGN 198
F+CNICLD ++D V++ CGHLFCW C +Q N + CP C ++ +IP+YG G+
Sbjct: 39 FECNICLDTSKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGS 98
Query: 199 SNDLQKLKSKESCLKVPPRPLARRIE 224
+ + +E K PPRP +R E
Sbjct: 99 TG---QQDPRE---KTPPRPQGQRPE 118
>sp|O64425|RMA1_ARATH E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1
PE=1 SV=1
Length = 249
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 78/152 (51%), Gaps = 24/152 (15%)
Query: 139 FDCNICLDMARDPVLTCCGHLFCWSCFYQL--------PYAYRNVKECPACNGEVTDASI 190
FDCNICLD ++PV+T CGHLFCW C ++ Y+ ++CP C +V+ +++
Sbjct: 46 FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTL 105
Query: 191 IPIYGNGNSNDLQKLKSKESCLKVPPRPLARRIESVRQQLVNRRPVSTPIEVRIQQ---F 247
+P+YG G ++ K+ VP RP+ R ++ N ST ++R+ Q F
Sbjct: 106 VPLYGRGRCTTQEEGKN-----SVPKRPVG---PVYRLEMPNSPYAST--DLRLSQRVHF 155
Query: 248 NSIVDAARHQTGSLDLDAAVRSGELEVNDPLL 279
NS + +G + ++ S L DP++
Sbjct: 156 NSPQEGYYPVSGVMSSNSLSYSAVL---DPVM 184
>sp|P48754|BRCA1_MOUSE Breast cancer type 1 susceptibility protein homolog OS=Mus musculus
GN=Brca1 PE=1 SV=3
Length = 1812
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 137 EFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASI 190
+ +C ICL++ ++PV T C H+FC C +L + +CP C E+T S+
Sbjct: 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNEITKRSL 73
>sp|O54952|BRCA1_RAT Breast cancer type 1 susceptibility protein homolog OS=Rattus
norvegicus GN=Brca1 PE=1 SV=1
Length = 1817
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 137 EFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASI 190
+ +C ICL++ ++PV T C H+FC C +L + +CP C E+T S+
Sbjct: 20 KILECPICLELIKEPVSTQCDHIFCKFCMLKLLNQKKGPSQCPLCKNEITKRSL 73
>sp|Q864U1|BRCA1_BOVIN Breast cancer type 1 susceptibility protein homolog OS=Bos taurus
GN=BRCA1 PE=1 SV=1
Length = 1849
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 137 EFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASI 190
+ +C ICL++ ++PV T C H+FC C +L + +CP C ++T S+
Sbjct: 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|P93471|COP1_PEA E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1
Length = 672
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 139 FDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIY 194
F C IC+ + +D LT CGH FC+ C + RN +CP C +T++++ P +
Sbjct: 45 FLCPICMQIIKDAFLTACGHSFCYMC---IITHLRNKSDCPCCGHYLTNSNLFPNF 97
>sp|P38398|BRCA1_HUMAN Breast cancer type 1 susceptibility protein OS=Homo sapiens
GN=BRCA1 PE=1 SV=2
Length = 1863
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 137 EFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASI 190
+ +C ICL++ ++PV T C H+FC C +L + +CP C ++T S+
Sbjct: 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q6J6J0|BRCA1_PONPY Breast cancer type 1 susceptibility protein homolog OS=Pongo
pygmaeus GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 137 EFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASI 190
+ +C ICL++ ++PV T C H+FC C +L + +CP C ++T S+
Sbjct: 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q95153|BRCA1_CANFA Breast cancer type 1 susceptibility protein homolog OS=Canis
familiaris GN=BRCA1 PE=3 SV=1
Length = 1878
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 137 EFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASI 190
+ +C ICL++ ++PV T C H+FC C +L + +CP C ++T S+
Sbjct: 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQRKGPSQCPLCKNDITKRSL 73
>sp|Q6J6I8|BRCA1_GORGO Breast cancer type 1 susceptibility protein homolog OS=Gorilla
gorilla gorilla GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 137 EFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASI 190
+ +C ICL++ ++PV T C H+FC C +L + +CP C ++T S+
Sbjct: 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q9GKK8|BRCA1_PANTR Breast cancer type 1 susceptibility protein homolog OS=Pan
troglodytes GN=BRCA1 PE=2 SV=2
Length = 1863
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 137 EFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASI 190
+ +C ICL++ ++PV T C H+FC C +L + +CP C ++T S+
Sbjct: 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q6J6I9|BRCA1_MACMU Breast cancer type 1 susceptibility protein homolog OS=Macaca
mulatta GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 137 EFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASI 190
+ +C ICL++ ++PV T C H+FC C +L + +CP C ++T S+
Sbjct: 20 KILECPICLELIKEPVSTKCDHIFCRFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|P43254|COP1_ARATH E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1
PE=1 SV=2
Length = 675
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 131 AGAGGGEF--------FDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACN 182
G+GG E C IC+ + +D LT CGH FC+ C + RN +CP C+
Sbjct: 34 GGSGGSEIGAPDLDKDLLCPICMQIIKDAFLTACGHSFCYMC---IITHLRNKSDCPCCS 90
Query: 183 GEVTDASIIPIY 194
+T+ + P +
Sbjct: 91 QHLTNNQLYPNF 102
>sp|O77666|TRI26_PIG Tripartite motif-containing protein 26 OS=Sus scrofa GN=TRIM26 PE=3
SV=2
Length = 545
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%)
Query: 141 CNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIY 194
C+ICLD RDPV CGH+FC SC + CP C T +I P++
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTTDIHPVSGGRPVCPLCKKPFTKENIRPVW 69
>sp|Q9SYU4|PEX10_ARATH Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana GN=PEX10
PE=1 SV=1
Length = 381
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 141 CNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVK-ECPACNGEVTDASIIPIY 194
C +CL + P T CGH+FCWSC + + N K ECP C T +S++ +Y
Sbjct: 327 CTLCLSTRQHPTATPCGHVFCWSCIME----WCNEKQECPLCRTPNTHSSLVCLY 377
>sp|P62603|TRI26_RAT Tripartite motif-containing protein 26 OS=Rattus norvegicus
GN=Trim26 PE=2 SV=1
Length = 542
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%)
Query: 141 CNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIY 194
C+ICLD RDPV CGH+FC SC + N CP C +I P++
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTSDIRPISGNRPVCPLCKKPFKKENIRPVW 69
>sp|Q99PN3|TRI26_MOUSE Tripartite motif-containing protein 26 OS=Mus musculus GN=Trim26
PE=2 SV=3
Length = 545
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%)
Query: 141 CNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIY 194
C+ICLD RDPV CGH+FC SC + N CP C +I P++
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTSDIRPISGNRPVCPLCKKPFKKENIRPVW 69
>sp|Q91431|NF7O_XENLA Nuclear factor 7, ovary OS=Xenopus laevis PE=2 SV=1
Length = 610
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 18/99 (18%)
Query: 132 GAGG--GEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTD-- 187
GA G E C +C+++ +DPV+ CGH FC SC ++ + ++ CP C +TD
Sbjct: 135 GAAGDFAEELTCPLCVELFKDPVMVACGHNFCRSCIDKV-WEGQSSFACPECKESITDRK 193
Query: 188 ASIIPIYGNGNSNDLQKLKSKESCLKVPP-----RPLAR 221
+I + N L K +C V P RPL +
Sbjct: 194 YTINRVLAN--------LAKKAACTPVTPVEKKTRPLEK 224
>sp|Q9R1A8|RFWD2_MOUSE E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1
SV=2
Length = 733
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 139 FDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIYGNGN 198
F C IC DM + +T CGH FC+ C +Q + + CP CN V + I +Y N
Sbjct: 136 FVCPICFDMIEEAYMTKCGHSFCYKCIHQ---SLEDNNRCPKCNYVVDN--IDHLYPNFL 190
Query: 199 SNDL---QKLKSKESCLKV 214
N+L QK + +E K+
Sbjct: 191 VNELILKQKQRFEEKRFKL 209
>sp|Q8NHY2|RFWD2_HUMAN E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1
SV=1
Length = 731
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 139 FDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIYGNGN 198
F C IC DM + +T CGH FC+ C +Q + + CP CN V + I +Y N
Sbjct: 134 FVCPICFDMIEEAYMTKCGHSFCYKCIHQ---SLEDNNRCPKCNYVVDN--IDHLYPNFL 188
Query: 199 SNDL---QKLKSKESCLKV 214
N+L QK + +E K+
Sbjct: 189 VNELILKQKQRFEEKRFKL 207
>sp|Q5PPX5|RN170_XENLA E3 ubiquitin-protein ligase RNF170 OS=Xenopus laevis GN=rnf170 PE=2
SV=1
Length = 257
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 141 CNICLDMARDPVLTCCGHLFCWSCF--YQLPYAYRNVKECPACNGEVTDASIIPIYGNGN 198
C +CL A PV T CGHLFC SC Y + CP C VT + P++G +
Sbjct: 87 CPVCLQQATFPVETNCGHLFCGSCIIAYWRYGTWLGAINCPICRQTVT--LLFPLFGATD 144
Query: 199 SNDLQKLKSKES 210
D Q + + +
Sbjct: 145 QEDAQNILQEAT 156
>sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 1
OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1
Length = 881
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 131 AGAGGGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASI 190
A GE FDC IC+ + ++T C H+FC +C Q R+ CP C G +T + +
Sbjct: 625 AALQDGEDFDCPICISPPTNIIITRCAHIFCRACILQT--LQRSKPLCPLCRGSLTQSDL 682
>sp|Q12899|TRI26_HUMAN Tripartite motif-containing protein 26 OS=Homo sapiens GN=TRIM26
PE=2 SV=1
Length = 539
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 141 CNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIY 194
C+ICLD RDPV CGH+FC SC + + CP C +I P++
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPFKKENIRPVW 69
>sp|Q54S31|PEX10_DICDI Peroxisome biogenesis factor 10 OS=Dictyostelium discoideum
GN=pex10 PE=3 SV=2
Length = 374
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 141 CNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIYG 195
C +CL++ T CGHLFCW C + N ++CP C ++ + +P+Y
Sbjct: 322 CTLCLEVRTHTTATICGHLFCWHCITEWC---NNKEQCPVCRCPISIRTCVPLYN 373
>sp|Q7YR34|TRI26_PANTR Tripartite motif-containing protein 26 OS=Pan troglodytes GN=TRIM26
PE=3 SV=1
Length = 539
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 141 CNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIY 194
C+ICLD RDPV CGH+FC SC + + CP C +I P++
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPFKKENIRPVW 69
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1
SV=1
Length = 1003
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 140 DCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEV 185
+C ICLD PV+T C H+FC C Q+ ++ + +CP C E+
Sbjct: 753 ECAICLDSLTFPVITHCAHVFCKPCICQVIHSEQPHAKCPLCRNEI 798
>sp|Q00940|PEX10_PICAN Peroxisome biogenesis factor 10 OS=Pichia angusta GN=PEX10 PE=3
SV=1
Length = 295
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 141 CNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPI 193
C +CL +DP CGH+FCW C + +ECP C ++ ++ ++P+
Sbjct: 245 CMLCLSPMKDPSCGECGHVFCWKCVLDWV---KERQECPLCRAKMRESQLLPL 294
>sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis PE=1 SV=1
Length = 609
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 18/99 (18%)
Query: 132 GAGG--GEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTD-- 187
GA G E C +C+++ +DPV+ CGH FC SC + + ++ CP C +TD
Sbjct: 134 GAAGDFAEELTCPLCVELFKDPVMVACGHNFCRSCIDK-AWEGQSSFACPECRESITDRK 192
Query: 188 ASIIPIYGNGNSNDLQKLKSKESCLKVPP-----RPLAR 221
+I + N L K +C V P RPL +
Sbjct: 193 YTINRVLAN--------LAKKAACTPVTPVEKKTRPLEK 223
>sp|Q8RXD6|BRE1A_ARATH E3 ubiquitin-protein ligase BRE1-like 1 OS=Arabidopsis thaliana
GN=HUB1 PE=1 SV=1
Length = 878
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 137 EFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIY 194
E C C D ++ V+T C HLFC C +L + K+CP C+ I PIY
Sbjct: 822 EILKCKACNDRPKEVVITKCYHLFCNPCVQKLTGTRQ--KKCPTCSASFGPNDIKPIY 877
>sp|O60683|PEX10_HUMAN Peroxisome biogenesis factor 10 OS=Homo sapiens GN=PEX10 PE=1 SV=1
Length = 326
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 141 CNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVK-ECPACNGEVTDASII 191
C +CL+ R P T CGHLFCW C A+ + K ECP C + +I
Sbjct: 273 CTLCLEERRHPTATPCGHLFCWECI----TAWCSSKAECPLCREKFPPQKLI 320
>sp|Q8HXW8|PEX10_MACFA Peroxisome biogenesis factor 10 OS=Macaca fascicularis GN=PEX10
PE=2 SV=1
Length = 326
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 141 CNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVK-ECPACNGEVTDASII 191
C +CL+ R P T CGHLFCW C A+ + K ECP C + +I
Sbjct: 273 CTLCLEERRHPTATPCGHLFCWECI----TAWCSSKAECPLCREKFPPQKLI 320
>sp|F1MK05|RN170_BOVIN E3 ubiquitin-protein ligase RNF170 OS=Bos taurus GN=RNF170 PE=3
SV=2
Length = 259
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 124 IHTDTKRAGAGGGEFFD---CNICLDMARDPVLTCCGHLFCWSCF--YQLPYAYRNVKEC 178
+ T+ A +F+ C ICL A PV T CGHLFC +C Y ++ C
Sbjct: 68 LQTEQDAPAAARQQFYTDMYCPICLHQASLPVETNCGHLFCGTCIVAYWRYGSWLGAISC 127
Query: 179 PACNGEVTDASIIPIYG-NGNSNDLQKLKSKES 210
P C VT ++P++G N S D+ L S
Sbjct: 128 PICRQTVT--LLLPVFGENDQSQDVVSLHQDIS 158
>sp|Q75EN0|RAD18_ASHGO Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=RAD18 PE=3 SV=1
Length = 443
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 141 CNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKE-CPACNGEV 185
C+IC DM + PVLT CGH FC C + Y N + CP C E+
Sbjct: 32 CHICKDMLQTPVLTQCGHTFCSLCIRE----YLNKESRCPLCLAEL 73
>sp|Q5XI59|RNF10_RAT RING finger protein 10 OS=Rattus norvegicus GN=Rnf10 PE=2 SV=1
Length = 802
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 141 CNICLDMARDPVLTCCGHLFCWSC-FYQLPYAYRNVKECPACNGEVTDASIIPI------ 193
C ICL +T CGH+FCW+C + L + R +CP C V + +
Sbjct: 225 CPICLYPPTAAKITRCGHIFCWACILHYLSLSERTWSKCPICYSSVHKKDLKSVVATESR 284
Query: 194 -YGNGNSNDLQKLKSKESCLKVPPR 217
Y G++ +Q +K ++ L P+
Sbjct: 285 QYVVGDTITMQLMKREKGVLVALPK 309
>sp|Q5NCC9|TRI58_MOUSE Tripartite motif-containing protein 58 OS=Mus musculus GN=Trim58
PE=2 SV=1
Length = 485
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 141 CNICLDMARDPVLTCCGHLFCWSC---FYQLPYAYRNVKECPACNGEVTDASIIP 192
C++CLD ++P+ CGH FC C F + + + V CP C G AS P
Sbjct: 15 CSVCLDFLQEPISVDCGHSFCLRCISEFCEKSDSAQGVYACPQCRGPFRPASFRP 69
>sp|Q3UIW5|RNF10_MOUSE RING finger protein 10 OS=Mus musculus GN=Rnf10 PE=2 SV=2
Length = 804
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 141 CNICLDMARDPVLTCCGHLFCWSC-FYQLPYAYRNVKECPACNGEVTDASIIPI------ 193
C ICL +T CGH+FCW+C + L + + +CP C V + +
Sbjct: 225 CPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESR 284
Query: 194 -YGNGNSNDLQKLKSKESCLKVPPR 217
Y G++ +Q +K ++ L P+
Sbjct: 285 QYAVGDTITMQLMKREKGVLVALPK 309
>sp|B1AUE5|PEX10_MOUSE Peroxisome biogenesis factor 10 OS=Mus musculus GN=Pex10 PE=2 SV=1
Length = 324
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 141 CNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVK-ECPACNGEVTDASIIPI 193
C +CL+ R T CGHLFCW C + + N K ECP C + ++ +
Sbjct: 271 CTLCLEERRHSTATPCGHLFCWECITE----WCNTKTECPLCREKFPPQKLVYL 320
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1
SV=2
Length = 1009
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 140 DCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASII 191
+C ICLD PV+T C H+FC C Q+ + +CP C ++ + +++
Sbjct: 759 ECAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLL 810
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,625,488
Number of Sequences: 539616
Number of extensions: 5807177
Number of successful extensions: 20017
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 276
Number of HSP's that attempted gapping in prelim test: 19595
Number of HSP's gapped (non-prelim): 652
length of query: 423
length of database: 191,569,459
effective HSP length: 120
effective length of query: 303
effective length of database: 126,815,539
effective search space: 38425108317
effective search space used: 38425108317
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)