Query 039490
Match_columns 423
No_of_seqs 433 out of 2363
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 17:25:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039490.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039490hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t1h_A Gspef-atpub14, armadill 99.5 1.6E-14 5.6E-19 113.7 4.5 67 135-203 5-71 (78)
2 2egp_A Tripartite motif-contai 99.5 2.5E-14 8.5E-19 112.5 4.5 66 134-199 8-77 (79)
3 3ztg_A E3 ubiquitin-protein li 99.5 2.5E-14 8.6E-19 116.1 3.9 69 134-203 9-79 (92)
4 2kre_A Ubiquitin conjugation f 99.5 1.8E-14 6.1E-19 119.9 3.0 68 134-204 25-92 (100)
5 2kr4_A Ubiquitin conjugation f 99.5 2.2E-14 7.7E-19 115.7 3.3 68 134-204 10-77 (85)
6 2ecw_A Tripartite motif-contai 99.5 1.1E-13 3.8E-18 109.8 7.3 65 135-199 16-83 (85)
7 2ecv_A Tripartite motif-contai 99.4 1.2E-13 4.2E-18 109.5 6.5 66 134-199 15-83 (85)
8 1wgm_A Ubiquitin conjugation f 99.4 7.9E-14 2.7E-18 115.5 4.3 68 134-204 18-86 (98)
9 2ysl_A Tripartite motif-contai 99.4 2E-13 6.7E-18 105.9 5.6 56 135-190 17-72 (73)
10 2djb_A Polycomb group ring fin 99.4 3.2E-13 1.1E-17 104.9 6.5 59 133-194 10-69 (72)
11 2yur_A Retinoblastoma-binding 99.4 3.4E-13 1.2E-17 105.5 5.5 54 133-187 10-64 (74)
12 2yu4_A E3 SUMO-protein ligase 99.4 1.8E-13 6.1E-18 112.3 3.6 71 135-205 4-81 (94)
13 2ecy_A TNF receptor-associated 99.4 4.2E-13 1.4E-17 102.3 5.1 54 135-190 12-65 (66)
14 1jm7_A BRCA1, breast cancer ty 99.4 2.5E-13 8.7E-18 113.8 3.7 67 137-203 20-86 (112)
15 3lrq_A E3 ubiquitin-protein li 99.4 1.3E-13 4.5E-18 114.2 1.9 61 136-198 20-81 (100)
16 3fl2_A E3 ubiquitin-protein li 99.3 1.9E-13 6.5E-18 117.2 1.8 60 137-198 51-111 (124)
17 2ct2_A Tripartite motif protei 99.3 9.3E-13 3.2E-17 105.5 5.7 57 134-190 11-71 (88)
18 3ng2_A RNF4, snurf, ring finge 99.3 2.3E-13 8E-18 104.7 2.1 56 136-194 8-70 (71)
19 2xeu_A Ring finger protein 4; 99.3 5.9E-13 2E-17 100.2 3.3 55 137-194 2-63 (64)
20 2d8t_A Dactylidin, ring finger 99.3 6.4E-13 2.2E-17 102.9 3.5 52 136-190 13-64 (71)
21 1g25_A CDK-activating kinase a 99.3 9.7E-13 3.3E-17 100.0 4.5 57 137-195 2-63 (65)
22 2csy_A Zinc finger protein 183 99.3 9.5E-13 3.2E-17 104.4 4.2 50 134-186 11-60 (81)
23 2ysj_A Tripartite motif-contai 99.3 1.7E-12 5.7E-17 98.0 5.3 48 134-181 16-63 (63)
24 2y43_A E3 ubiquitin-protein li 99.3 3.2E-13 1.1E-17 111.2 1.3 64 137-203 21-85 (99)
25 1z6u_A NP95-like ring finger p 99.3 2.9E-13 9.8E-18 120.5 0.2 64 136-201 76-140 (150)
26 4ayc_A E3 ubiquitin-protein li 99.3 9.3E-13 3.2E-17 115.2 3.1 47 138-187 53-99 (138)
27 2c2l_A CHIP, carboxy terminus 99.3 1.1E-12 3.7E-17 126.1 2.8 68 134-203 204-271 (281)
28 2ecj_A Tripartite motif-contai 99.3 3.5E-12 1.2E-16 94.2 4.8 48 134-181 11-58 (58)
29 2f42_A STIP1 homology and U-bo 99.3 1.5E-12 5E-17 119.1 3.0 68 134-203 102-169 (179)
30 1jm7_B BARD1, BRCA1-associated 99.2 1.1E-12 3.7E-17 111.6 1.3 60 137-201 21-81 (117)
31 2ect_A Ring finger protein 126 99.2 5.1E-12 1.7E-16 99.3 4.9 57 135-194 12-71 (78)
32 2ckl_A Polycomb group ring fin 99.2 1.5E-12 5.3E-17 108.9 1.7 50 136-188 13-63 (108)
33 2ea6_A Ring finger protein 4; 99.2 4.8E-12 1.6E-16 96.5 4.1 50 135-187 12-68 (69)
34 2ecn_A Ring finger protein 141 99.2 6.6E-12 2.3E-16 96.6 3.6 52 135-190 12-63 (70)
35 2ckl_B Ubiquitin ligase protei 99.2 2.2E-12 7.5E-17 115.9 0.5 62 135-198 51-114 (165)
36 1bor_A Transcription factor PM 99.2 8.1E-12 2.8E-16 92.5 3.1 46 136-187 4-49 (56)
37 3l11_A E3 ubiquitin-protein li 99.2 6.3E-12 2.2E-16 106.2 2.7 51 135-187 12-62 (115)
38 3hct_A TNF receptor-associated 99.2 1.4E-11 4.8E-16 104.8 4.3 60 134-195 14-73 (118)
39 1iym_A EL5; ring-H2 finger, ub 99.1 2.9E-11 9.9E-16 88.4 4.7 48 136-186 3-54 (55)
40 3htk_C E3 SUMO-protein ligase 99.1 8E-12 2.7E-16 119.9 1.9 70 133-203 176-248 (267)
41 2ecm_A Ring finger and CHY zin 99.1 2.8E-11 9.4E-16 88.4 4.3 47 137-186 4-54 (55)
42 2kiz_A E3 ubiquitin-protein li 99.1 2E-11 6.8E-16 93.6 3.5 50 135-187 11-63 (69)
43 4ap4_A E3 ubiquitin ligase RNF 99.1 1.7E-11 6E-16 104.8 3.5 58 136-196 5-69 (133)
44 1rmd_A RAG1; V(D)J recombinati 99.1 1.6E-11 5.3E-16 103.9 2.5 54 137-192 22-75 (116)
45 2l0b_A E3 ubiquitin-protein li 99.1 3E-11 1E-15 98.2 3.7 49 136-187 38-89 (91)
46 1e4u_A Transcriptional repress 99.1 5.2E-11 1.8E-15 94.5 4.7 54 135-190 8-65 (78)
47 1chc_A Equine herpes virus-1 r 99.1 2.5E-11 8.5E-16 92.7 2.5 47 137-186 4-51 (68)
48 1x4j_A Ring finger protein 38; 99.1 2.9E-11 9.9E-16 94.4 2.4 49 136-187 21-72 (75)
49 1z5z_A Helicase of the SNF2/RA 99.1 5.2E-11 1.8E-15 115.4 4.4 104 219-324 94-214 (271)
50 1v87_A Deltex protein 2; ring- 99.0 8E-11 2.7E-15 99.0 4.0 50 138-187 25-94 (114)
51 2ep4_A Ring finger protein 24; 99.0 6.8E-11 2.3E-15 91.8 3.2 49 136-187 13-64 (74)
52 3knv_A TNF receptor-associated 99.0 3.4E-11 1.2E-15 106.0 1.2 52 135-188 28-79 (141)
53 3mwy_W Chromo domain-containin 99.0 9.6E-11 3.3E-15 129.3 4.8 106 219-325 554-675 (800)
54 4ic3_A E3 ubiquitin-protein li 99.0 1.5E-10 5.1E-15 90.6 2.7 44 137-187 23-67 (74)
55 3hcs_A TNF receptor-associated 99.0 2.3E-10 7.8E-15 103.1 4.3 59 134-194 14-72 (170)
56 4ap4_A E3 ubiquitin ligase RNF 99.0 8.6E-11 2.9E-15 100.5 0.9 56 136-194 70-132 (133)
57 1z3i_X Similar to RAD54-like; 98.9 3E-10 1E-14 122.4 3.3 104 220-324 398-518 (644)
58 2ecl_A Ring-box protein 2; RNF 98.9 4.4E-10 1.5E-14 89.4 3.3 48 137-187 14-76 (81)
59 2bay_A PRE-mRNA splicing facto 98.9 2.1E-10 7E-15 86.8 1.2 55 138-195 3-58 (61)
60 2y1n_A E3 ubiquitin-protein li 98.9 5.1E-10 1.7E-14 113.3 3.0 52 137-190 331-382 (389)
61 2ecg_A Baculoviral IAP repeat- 98.9 7E-10 2.4E-14 86.8 2.3 44 137-187 24-68 (75)
62 2vje_A E3 ubiquitin-protein li 98.8 9E-10 3.1E-14 83.8 1.9 53 137-194 7-62 (64)
63 2ea5_A Cell growth regulator w 98.8 7.2E-09 2.5E-13 79.8 5.9 45 136-187 13-58 (68)
64 2vje_B MDM4 protein; proto-onc 98.8 1.7E-09 5.9E-14 81.9 1.6 47 137-186 6-55 (63)
65 3dpl_R Ring-box protein 1; ubi 98.8 3.7E-09 1.3E-13 88.6 3.8 46 138-186 37-100 (106)
66 2yho_A E3 ubiquitin-protein li 98.8 2.5E-09 8.4E-14 84.8 2.5 44 137-187 17-61 (79)
67 1wim_A KIAA0161 protein; ring 98.6 4.1E-09 1.4E-13 85.8 0.1 53 136-188 3-67 (94)
68 3t6p_A Baculoviral IAP repeat- 98.6 1.1E-08 3.7E-13 102.5 3.1 45 136-187 293-338 (345)
69 2d8s_A Cellular modulator of i 98.6 3.1E-08 1E-12 78.8 5.1 52 136-188 13-71 (80)
70 4a0k_B E3 ubiquitin-protein li 98.5 1.1E-08 3.7E-13 87.3 0.5 46 138-186 48-111 (117)
71 3hgt_A HDA1 complex subunit 3; 98.5 4.8E-08 1.6E-12 96.9 5.0 107 219-327 107-228 (328)
72 1z63_A Helicase of the SNF2/RA 98.5 6.3E-08 2.2E-12 100.1 3.8 104 219-324 323-443 (500)
73 2ct0_A Non-SMC element 1 homol 98.3 1.1E-06 3.9E-11 68.7 5.7 50 136-186 13-63 (74)
74 3k1l_B Fancl; UBC, ring, RWD, 98.0 1.4E-06 4.7E-11 86.4 1.8 52 136-187 306-373 (381)
75 3vk6_A E3 ubiquitin-protein li 97.9 4.6E-06 1.6E-10 68.4 3.1 46 140-187 3-49 (101)
76 1vyx_A ORF K3, K3RING; zinc-bi 97.9 5.1E-06 1.7E-10 62.3 3.1 51 136-187 4-59 (60)
77 1wp9_A ATP-dependent RNA helic 97.5 6.8E-05 2.3E-09 74.9 4.7 100 219-321 341-465 (494)
78 3dmq_A RNA polymerase-associat 97.0 0.00068 2.3E-08 76.3 7.1 98 217-323 485-604 (968)
79 2jgn_A DBX, DDX3, ATP-dependen 96.7 0.002 6.8E-08 58.0 5.7 118 220-346 30-170 (185)
80 3nw0_A Non-structural maintena 96.6 0.0015 5E-08 62.0 4.6 50 137-187 179-229 (238)
81 3m62_A Ubiquitin conjugation f 96.6 0.0005 1.7E-08 76.4 1.2 70 133-205 886-956 (968)
82 1t5i_A C_terminal domain of A 96.5 0.0031 1.1E-07 55.9 5.8 93 220-322 16-128 (172)
83 2hjv_A ATP-dependent RNA helic 96.2 0.0085 2.9E-07 52.3 7.0 93 220-322 20-132 (163)
84 2jun_A Midline-1; B-BOX, TRIM, 96.0 0.0025 8.6E-08 51.7 2.0 32 137-168 2-36 (101)
85 3tbk_A RIG-I helicase domain; 95.9 0.0075 2.6E-07 61.8 5.7 78 220-299 370-469 (555)
86 1fuk_A Eukaryotic initiation f 95.8 0.02 6.7E-07 50.0 7.0 113 222-344 17-152 (165)
87 2p6n_A ATP-dependent RNA helic 95.7 0.0045 1.5E-07 56.1 2.8 92 220-322 40-151 (191)
88 2rb4_A ATP-dependent RNA helic 95.6 0.009 3.1E-07 52.7 4.2 73 221-299 20-101 (175)
89 2yjt_D ATP-dependent RNA helic 93.8 0.0049 1.7E-07 54.3 0.0 120 220-345 15-153 (170)
90 4a2p_A RIG-I, retinoic acid in 94.8 0.027 9.1E-07 57.8 5.5 79 219-299 370-470 (556)
91 2fwr_A DNA repair protein RAD2 94.6 0.0088 3E-07 60.8 1.4 97 220-322 334-441 (472)
92 4a2w_A RIG-I, retinoic acid in 93.8 0.084 2.9E-06 59.1 7.1 79 219-299 611-711 (936)
93 4a2q_A RIG-I, retinoic acid in 93.8 0.065 2.2E-06 58.6 6.1 79 219-299 611-711 (797)
94 2ko5_A Ring finger protein Z; 93.1 0.054 1.9E-06 43.7 3.0 48 137-188 27-74 (99)
95 3i2d_A E3 SUMO-protein ligase 91.7 0.095 3.2E-06 52.5 3.4 56 136-192 247-305 (371)
96 3eaq_A Heat resistant RNA depe 91.6 0.23 7.7E-06 45.2 5.6 93 219-321 15-127 (212)
97 4fo9_A E3 SUMO-protein ligase 91.5 0.12 4.2E-06 51.5 3.9 57 135-192 212-271 (360)
98 2cs3_A Protein C14ORF4, MY039 91.1 0.14 4.8E-06 40.1 3.1 46 136-181 13-64 (93)
99 1xti_A Probable ATP-dependent 91.1 0.42 1.4E-05 46.4 7.3 93 220-322 235-347 (391)
100 1hv8_A Putative ATP-dependent 88.7 0.35 1.2E-05 46.3 4.5 92 220-322 224-335 (367)
101 1s2m_A Putative ATP-dependent 87.6 0.87 3E-05 44.4 6.7 114 220-343 243-379 (400)
102 2ykg_A Probable ATP-dependent 87.5 0.51 1.7E-05 50.1 5.3 79 219-299 378-478 (696)
103 2oca_A DAR protein, ATP-depend 85.3 0.32 1.1E-05 49.7 2.1 99 222-323 332-446 (510)
104 2j0s_A ATP-dependent RNA helic 82.9 1.4 4.9E-05 43.0 5.7 92 221-322 262-373 (410)
105 1wil_A KIAA1045 protein; ring 82.5 1.2 4.2E-05 35.2 3.9 45 137-182 14-74 (89)
106 3i32_A Heat resistant RNA depe 82.4 1.6 5.4E-05 42.2 5.6 92 220-321 13-124 (300)
107 2lv9_A Histone-lysine N-methyl 81.7 0.85 2.9E-05 36.9 2.9 47 136-183 26-75 (98)
108 3h1t_A Type I site-specific re 80.9 0.84 2.9E-05 47.7 3.3 82 236-321 437-545 (590)
109 3eiq_A Eukaryotic initiation f 80.0 1.8 6.3E-05 42.1 5.2 116 221-346 266-404 (414)
110 2db3_A ATP-dependent RNA helic 76.6 3 0.0001 41.7 5.8 91 220-321 286-396 (434)
111 1weu_A Inhibitor of growth fam 76.1 5.2 0.00018 31.9 5.8 47 136-185 34-86 (91)
112 2lri_C Autoimmune regulator; Z 75.5 3.5 0.00012 30.8 4.4 48 137-185 11-60 (66)
113 1wd2_A Ariadne-1 protein homol 74.5 0.89 3E-05 33.5 0.8 31 139-169 7-45 (60)
114 1wen_A Inhibitor of growth fam 74.4 4.7 0.00016 30.5 5.0 48 136-185 14-66 (71)
115 2fiy_A Protein FDHE homolog; F 73.7 0.92 3.2E-05 44.3 1.0 46 136-184 180-231 (309)
116 2k16_A Transcription initiatio 72.8 1.7 5.9E-05 33.0 2.2 51 136-186 16-70 (75)
117 1weo_A Cellulose synthase, cat 71.8 3.2 0.00011 33.1 3.5 48 138-187 16-70 (93)
118 3pey_A ATP-dependent RNA helic 68.9 8.8 0.0003 36.6 6.8 91 222-321 230-345 (395)
119 2i4i_A ATP-dependent RNA helic 68.9 3.8 0.00013 39.9 4.2 93 220-321 260-372 (417)
120 4gl2_A Interferon-induced heli 66.1 1.8 6E-05 45.9 1.2 76 221-299 381-481 (699)
121 1m3v_A FLIN4, fusion of the LI 65.2 2.8 9.5E-05 34.7 2.0 51 137-190 31-84 (122)
122 3o70_A PHD finger protein 13; 63.9 2 6.8E-05 32.4 0.8 49 134-183 15-66 (68)
123 2xqn_T Testin, TESS; metal-bin 63.3 5.4 0.00019 32.8 3.5 47 137-188 29-76 (126)
124 2lbm_A Transcriptional regulat 62.8 5.8 0.0002 34.3 3.7 47 136-182 61-115 (142)
125 1z60_A TFIIH basal transcripti 62.5 6 0.00021 29.1 3.1 39 140-181 17-58 (59)
126 2yt5_A Metal-response element- 61.8 2.7 9.2E-05 31.0 1.2 50 136-185 4-62 (66)
127 2jne_A Hypothetical protein YF 61.3 0.83 2.8E-05 37.0 -1.8 40 139-186 33-72 (101)
128 2zet_C Melanophilin; complex, 61.1 3.6 0.00012 36.0 2.0 44 138-183 68-116 (153)
129 2jtn_A LIM domain-binding prot 59.6 6.3 0.00021 34.8 3.4 48 137-189 86-133 (182)
130 1f62_A Transcription factor WS 59.1 5.7 0.0002 27.6 2.5 44 140-183 2-49 (51)
131 2z0m_A 337AA long hypothetical 58.8 4.7 0.00016 37.7 2.6 79 236-321 218-312 (337)
132 3oiy_A Reverse gyrase helicase 58.5 6 0.0002 38.8 3.4 73 221-299 239-318 (414)
133 1mm2_A MI2-beta; PHD, zinc fin 58.5 6.3 0.00021 28.8 2.7 47 136-184 7-56 (61)
134 2jmo_A Parkin; IBR, E3 ligase, 58.3 2.6 9E-05 32.6 0.6 14 155-168 55-68 (80)
135 2cup_A Skeletal muscle LIM-pro 58.0 7.1 0.00024 30.7 3.2 47 137-188 32-79 (101)
136 2rgt_A Fusion of LIM/homeobox 57.8 6.7 0.00023 34.2 3.3 48 137-189 32-79 (169)
137 1fuu_A Yeast initiation factor 56.1 2.4 8.1E-05 40.9 0.0 83 237-322 258-356 (394)
138 1joc_A EEA1, early endosomal a 55.6 4.3 0.00015 34.1 1.6 32 137-168 68-103 (125)
139 3mpx_A FYVE, rhogef and PH dom 55.4 2.5 8.5E-05 42.4 0.0 49 137-185 374-430 (434)
140 2pv0_B DNA (cytosine-5)-methyl 54.8 8.4 0.00029 38.7 3.7 47 136-183 91-147 (386)
141 3ql9_A Transcriptional regulat 53.9 11 0.00037 32.1 3.7 48 136-183 55-110 (129)
142 1we9_A PHD finger family prote 53.7 5.2 0.00018 29.2 1.6 48 136-183 4-57 (64)
143 3mjh_B Early endosome antigen 53.6 3.1 0.00011 27.2 0.3 15 137-151 4-18 (34)
144 3u5n_A E3 ubiquitin-protein li 53.5 5.3 0.00018 36.3 1.9 47 137-185 6-55 (207)
145 2l43_A N-teminal domain from h 52.5 7.2 0.00025 30.7 2.3 54 136-190 23-81 (88)
146 1vfy_A Phosphatidylinositol-3- 52.4 5.5 0.00019 30.1 1.5 30 139-168 12-45 (73)
147 1y02_A CARP2, FYVE-ring finger 51.9 2.5 8.7E-05 35.5 -0.5 44 137-183 18-65 (120)
148 2d8v_A Zinc finger FYVE domain 51.7 8.4 0.00029 28.9 2.4 32 136-168 6-38 (67)
149 2yw8_A RUN and FYVE domain-con 51.7 7.5 0.00026 30.1 2.3 33 136-168 17-53 (82)
150 1wev_A Riken cDNA 1110020M19; 51.4 2.3 7.9E-05 33.6 -0.8 48 138-185 16-73 (88)
151 1z2q_A LM5-1; membrane protein 50.7 11 0.00038 29.2 3.1 33 136-168 19-55 (84)
152 3o36_A Transcription intermedi 50.4 8 0.00027 34.3 2.6 48 138-186 4-53 (184)
153 2ct7_A Ring finger protein 31; 50.4 4.3 0.00015 31.7 0.7 29 140-168 27-61 (86)
154 1wfk_A Zinc finger, FYVE domai 50.0 7.9 0.00027 30.5 2.2 32 137-168 8-43 (88)
155 2l5u_A Chromodomain-helicase-D 49.8 12 0.0004 27.3 3.0 46 136-183 9-57 (61)
156 3t7l_A Zinc finger FYVE domain 49.4 6.5 0.00022 31.1 1.6 32 137-168 19-54 (90)
157 1wem_A Death associated transc 49.1 7.3 0.00025 29.5 1.8 47 137-184 15-70 (76)
158 1x4u_A Zinc finger, FYVE domai 49.0 7.9 0.00027 30.0 2.0 33 136-168 12-48 (84)
159 1rut_X Flinc4, fusion protein 48.2 5.6 0.00019 35.3 1.2 50 137-189 31-83 (188)
160 2xjy_A Rhombotin-2; oncoprotei 46.7 11 0.00037 31.1 2.7 50 137-189 28-80 (131)
161 3a1b_A DNA (cytosine-5)-methyl 45.9 14 0.00048 32.5 3.3 47 136-183 77-133 (159)
162 1dvp_A HRS, hepatocyte growth 45.1 7.6 0.00026 35.5 1.6 31 138-168 161-195 (220)
163 2e6r_A Jumonji/ARID domain-con 44.4 5.2 0.00018 31.8 0.3 49 136-184 14-66 (92)
164 2ro1_A Transcription intermedi 44.1 11 0.00036 33.9 2.3 46 139-184 3-49 (189)
165 3lqh_A Histone-lysine N-methyl 44.1 7.4 0.00025 35.0 1.2 47 139-185 3-64 (183)
166 2vnf_A ING 4, P29ING4, inhibit 43.8 6 0.00021 28.8 0.5 45 136-183 8-58 (60)
167 2yql_A PHD finger protein 21A; 43.7 5.7 0.0002 28.4 0.4 47 136-183 7-55 (56)
168 1oyw_A RECQ helicase, ATP-depe 43.5 39 0.0013 34.6 6.9 93 220-321 221-332 (523)
169 3c6w_A P28ING5, inhibitor of g 43.2 6.4 0.00022 28.6 0.6 45 136-183 7-57 (59)
170 3zyq_A Hepatocyte growth facto 42.8 9.1 0.00031 35.3 1.7 31 138-168 164-198 (226)
171 2ysm_A Myeloid/lymphoid or mix 41.5 18 0.00062 29.2 3.2 47 136-182 5-55 (111)
172 2gmg_A Hypothetical protein PF 40.9 12 0.0004 30.8 1.8 24 154-185 71-94 (105)
173 1wep_A PHF8; structural genomi 40.8 31 0.0011 26.2 4.3 49 136-185 10-64 (79)
174 2o35_A Hypothetical protein DU 40.8 8.7 0.0003 31.2 1.0 12 159-170 42-53 (105)
175 1fp0_A KAP-1 corepressor; PHD 40.6 28 0.00097 27.5 4.0 48 136-184 23-72 (88)
176 4g9i_A Hydrogenase maturation 40.6 9.6 0.00033 41.7 1.7 51 136-186 104-189 (772)
177 3fyb_A Protein of unknown func 40.3 8.9 0.00031 31.0 1.0 12 159-170 41-52 (104)
178 3ttc_A HYPF, transcriptional r 39.6 10 0.00034 40.8 1.6 50 136-185 15-99 (657)
179 2puy_A PHD finger protein 21A; 38.6 11 0.00036 27.3 1.1 47 137-184 4-52 (60)
180 1xwh_A Autoimmune regulator; P 38.6 10 0.00035 28.0 1.1 46 137-183 7-54 (66)
181 3fht_A ATP-dependent RNA helic 38.5 39 0.0013 32.3 5.6 73 220-298 251-332 (412)
182 3vth_A Hydrogenase maturation 38.2 11 0.00036 41.3 1.6 51 136-186 109-194 (761)
183 1iml_A CRIP, cysteine rich int 38.0 26 0.00089 25.8 3.4 44 137-185 26-71 (76)
184 2jmi_A Protein YNG1, ING1 homo 37.9 13 0.00044 29.6 1.6 46 136-183 24-75 (90)
185 2ku3_A Bromodomain-containing 37.8 18 0.0006 27.3 2.3 47 136-183 14-65 (71)
186 1wee_A PHD finger family prote 36.6 11 0.00037 28.3 0.9 49 135-184 13-66 (72)
187 1wew_A DNA-binding family prot 36.5 17 0.0006 27.6 2.2 48 136-184 14-72 (78)
188 4ayb_P DNA-directed RNA polyme 36.0 11 0.00039 26.3 0.9 27 154-185 7-33 (48)
189 2jrp_A Putative cytoplasmic pr 35.2 3.7 0.00013 32.2 -1.9 40 139-186 3-42 (81)
190 6rxn_A Rubredoxin; electron tr 35.1 14 0.00047 25.7 1.2 13 172-184 27-39 (46)
191 2g6q_A Inhibitor of growth pro 34.4 11 0.00036 27.7 0.6 45 136-183 9-59 (62)
192 1etf_B REV peptide; complex (R 32.7 11 0.00038 23.1 0.3 8 57-64 7-14 (26)
193 1zbd_B Rabphilin-3A; G protein 31.6 15 0.0005 31.3 1.1 47 137-183 54-106 (134)
194 2dar_A PDZ and LIM domain prot 30.9 33 0.0011 26.2 3.0 39 139-188 26-64 (90)
195 2v1x_A ATP-dependent DNA helic 30.3 67 0.0023 33.6 6.2 92 222-321 253-363 (591)
196 2ri7_A Nucleosome-remodeling f 28.6 13 0.00043 32.5 0.2 48 136-184 6-59 (174)
197 1x64_A Alpha-actinin-2 associa 27.4 46 0.0016 25.3 3.3 40 138-188 25-64 (89)
198 3ask_A E3 ubiquitin-protein li 26.6 17 0.00058 33.8 0.7 44 140-183 176-224 (226)
199 1nyp_A Pinch protein; LIM doma 26.4 51 0.0017 23.4 3.2 39 139-188 6-44 (66)
200 1wyh_A SLIM 2, skeletal muscle 26.2 58 0.002 23.4 3.5 39 139-188 6-46 (72)
201 2e6s_A E3 ubiquitin-protein li 25.7 26 0.00087 26.8 1.4 44 140-183 28-76 (77)
202 2l3k_A Rhombotin-2, linker, LI 25.3 83 0.0028 25.5 4.7 34 137-170 35-70 (123)
203 1b8t_A Protein (CRP1); LIM dom 25.2 39 0.0013 29.8 2.8 53 139-191 35-131 (192)
204 2x7l_M HIV REV; nuclear export 25.1 14 0.00047 30.6 -0.2 11 57-67 40-50 (115)
205 2d8x_A Protein pinch; LIM doma 24.7 44 0.0015 24.0 2.5 39 139-188 6-44 (70)
206 3ukx_C Bimax2 peptide; arm rep 24.4 27 0.00094 21.0 1.0 26 397-422 2-27 (28)
207 3shb_A E3 ubiquitin-protein li 24.2 27 0.00091 26.8 1.3 44 140-183 28-76 (77)
208 2l4z_A DNA endonuclease RBBP8, 23.0 38 0.0013 27.9 2.1 28 138-165 61-89 (123)
209 2d8z_A Four and A half LIM dom 22.8 71 0.0024 22.8 3.4 37 140-187 7-43 (70)
210 1x62_A C-terminal LIM domain p 22.6 43 0.0015 24.9 2.2 38 138-186 15-52 (79)
211 3v43_A Histone acetyltransfera 22.4 41 0.0014 27.3 2.1 44 140-183 63-111 (112)
212 2cor_A Pinch protein; LIM doma 22.0 86 0.0029 23.2 3.8 40 138-188 15-54 (79)
213 3lph_A Protein REV; helix-loop 21.7 22 0.00077 26.9 0.3 10 56-65 40-49 (72)
214 3c5k_A HD6, histone deacetylas 21.6 31 0.001 28.2 1.2 26 138-163 24-49 (109)
215 3asl_A E3 ubiquitin-protein li 21.1 44 0.0015 24.9 1.9 44 140-183 20-68 (70)
216 2egq_A FHL1 protein; LIM domai 20.7 35 0.0012 25.1 1.3 24 158-186 3-26 (77)
217 2ehe_A Four and A half LIM dom 20.6 26 0.0009 26.2 0.5 10 177-186 17-26 (82)
218 1v6g_A Actin binding LIM prote 20.6 61 0.0021 24.0 2.7 39 140-189 17-55 (81)
219 3o7a_A PHD finger protein 13 v 20.5 24 0.00083 24.6 0.3 41 143-183 8-51 (52)
220 1x4l_A Skeletal muscle LIM-pro 20.3 73 0.0025 22.9 3.0 37 140-187 7-47 (72)
No 1
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.48 E-value=1.6e-14 Score=113.69 Aligned_cols=67 Identities=25% Similarity=0.423 Sum_probs=57.9
Q ss_pred CCCccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCceecccCCCchhhh
Q 039490 135 GGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIYGNGNSNDLQ 203 (423)
Q Consensus 135 ~~e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~ 203 (423)
..+.+.|+||++.+.+|++++|||+||..||..|+. .+...||+|+..+...++.+++.+.+.+..+
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~--~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~ 71 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLD--AGHKTCPKSQETLLHAGLTPNYVLKSLIALW 71 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHT--TTCCBCTTTCCBCSSCCCEECTTTHHHHHHH
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHH--HCcCCCCCCcCCCChhhCccCHHHHHHHHHH
Confidence 356789999999999999999999999999999965 3477899999999988899988876665544
No 2
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.47 E-value=2.5e-14 Score=112.55 Aligned_cols=66 Identities=23% Similarity=0.444 Sum_probs=55.9
Q ss_pred CCCCccccccccccccCcEEccCCCccchhhHhhhhhhc----CCCCCCCCCCcccCCCCceecccCCCc
Q 039490 134 GGGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAY----RNVKECPACNGEVTDASIIPIYGNGNS 199 (423)
Q Consensus 134 ~~~e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~----~~~~~CP~Cr~~i~~~~l~~~~~~~~~ 199 (423)
...+.+.|+||++.+.+|+.++|||.||..||..|+... .....||+||..+...++.+++.+.++
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 345678999999999999999999999999999997531 236789999999998888888877654
No 3
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.46 E-value=2.5e-14 Score=116.14 Aligned_cols=69 Identities=20% Similarity=0.391 Sum_probs=56.0
Q ss_pred CCCCccccccccccccCcEEcc-CCCccchhhHhhhhhhcCCCCCCCCCCccc-CCCCceecccCCCchhhh
Q 039490 134 GGGEFFDCNICLDMARDPVLTC-CGHLFCWSCFYQLPYAYRNVKECPACNGEV-TDASIIPIYGNGNSNDLQ 203 (423)
Q Consensus 134 ~~~e~~~C~ICle~~~~pv~~~-CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i-~~~~l~~~~~~~~~~~~~ 203 (423)
...+.+.|+||++.|.+|++++ |||+||..||..|+.. .....||+||..+ ....+.+++.+.+.++..
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~ 79 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE-SDEHTCPTCHQNDVSPDALIANKFLRQAVNNF 79 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHH-CTTCCCTTTCCSSCCTTSCEECHHHHHHHHHH
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHh-cCCCcCcCCCCcCCCccccCcCHHHHHHHHHH
Confidence 3467789999999999999999 9999999999999863 3457899999997 566777777665554443
No 4
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.45 E-value=1.8e-14 Score=119.87 Aligned_cols=68 Identities=15% Similarity=0.099 Sum_probs=59.0
Q ss_pred CCCCccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCceecccCCCchhhhh
Q 039490 134 GGGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIYGNGNSNDLQK 204 (423)
Q Consensus 134 ~~~e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~k 204 (423)
...+.+.||||+++|.+||+++|||+||+.||..||. ....||+|+.++...++++|..+.+.+..+.
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~---~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL---NSPTDPFNRQTLTESMLEPVPELKEQIQAWM 92 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT---SCSBCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH---cCCCCCCCCCCCChhhceECHHHHHHHHHHH
Confidence 3467899999999999999999999999999999975 3678999999999999999988766655553
No 5
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.45 E-value=2.2e-14 Score=115.65 Aligned_cols=68 Identities=13% Similarity=0.065 Sum_probs=58.7
Q ss_pred CCCCccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCceecccCCCchhhhh
Q 039490 134 GGGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIYGNGNSNDLQK 204 (423)
Q Consensus 134 ~~~e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~k 204 (423)
...+.+.||||+++|.+||+++|||+||+.||..||.. ...||+|+.++...++++|..+.+.+..+.
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~---~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN---SPTDPFNRQMLTESMLEPVPELKEQIQAWM 77 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH---CSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc---CCCCCCCcCCCChHhcchHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999873 578999999999889999987766555543
No 6
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=1.1e-13 Score=109.79 Aligned_cols=65 Identities=26% Similarity=0.512 Sum_probs=56.4
Q ss_pred CCCccccccccccccCcEEccCCCccchhhHhhhhhhc---CCCCCCCCCCcccCCCCceecccCCCc
Q 039490 135 GGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAY---RNVKECPACNGEVTDASIIPIYGNGNS 199 (423)
Q Consensus 135 ~~e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~---~~~~~CP~Cr~~i~~~~l~~~~~~~~~ 199 (423)
..+.+.|+||++.+.+|++++|||.||..|+..|+... .....||+||..+...++.+++.+.++
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred CccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 45678999999999999999999999999999998742 236789999999999899998877664
No 7
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.2e-13 Score=109.54 Aligned_cols=66 Identities=27% Similarity=0.533 Sum_probs=56.7
Q ss_pred CCCCccccccccccccCcEEccCCCccchhhHhhhhhh---cCCCCCCCCCCcccCCCCceecccCCCc
Q 039490 134 GGGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYA---YRNVKECPACNGEVTDASIIPIYGNGNS 199 (423)
Q Consensus 134 ~~~e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~---~~~~~~CP~Cr~~i~~~~l~~~~~~~~~ 199 (423)
...+.+.|+||++.+.+|+.++|||.||..|+..|+.. ......||+||..+...++.+++.+.++
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 34567899999999999999999999999999999763 2347889999999999888888877664
No 8
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.42 E-value=7.9e-14 Score=115.51 Aligned_cols=68 Identities=15% Similarity=-0.030 Sum_probs=59.1
Q ss_pred CCCCccccccccccccCcEEccCC-CccchhhHhhhhhhcCCCCCCCCCCcccCCCCceecccCCCchhhhh
Q 039490 134 GGGEFFDCNICLDMARDPVLTCCG-HLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIYGNGNSNDLQK 204 (423)
Q Consensus 134 ~~~e~~~C~ICle~~~~pv~~~CG-H~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~k 204 (423)
...+++.||||+++|.+||+++|| |+||+.||..||. ....||+|+.++...+++++..+.+.+..+.
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~---~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 86 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLL---SDQTDPFNRSPLTMDQIRPNTELKEKIQRWL 86 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTT---TSCBCTTTCSBCCTTTSEECHHHHHHHHHHH
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHH---hCCCCCCCCCCCChhhceEcHHHHHHHHHHH
Confidence 345789999999999999999999 9999999999976 3578999999999999999988776665554
No 9
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2e-13 Score=105.86 Aligned_cols=56 Identities=36% Similarity=0.703 Sum_probs=48.0
Q ss_pred CCCccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCc
Q 039490 135 GGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASI 190 (423)
Q Consensus 135 ~~e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l 190 (423)
..+.+.|+||++.+.+|++++|||.||..||..|+........||+||+.+...++
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred CccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 45678999999999999999999999999999996533456789999999886654
No 10
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=3.2e-13 Score=104.89 Aligned_cols=59 Identities=27% Similarity=0.487 Sum_probs=50.6
Q ss_pred CCCCCccccccccccccCcEEc-cCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCceecc
Q 039490 133 AGGGEFFDCNICLDMARDPVLT-CCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIY 194 (423)
Q Consensus 133 ~~~~e~~~C~ICle~~~~pv~~-~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l~~~~ 194 (423)
....+.+.|+||++.+.+|+.+ +|||.||..||..|+.. ...||+||+.+...++..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY---SNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH---CSSCTTTCCCCCSSCSCCCC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc---CCcCCCcCcccCcccccccC
Confidence 3446788999999999999986 99999999999999763 57899999999887776654
No 11
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.38 E-value=3.4e-13 Score=105.46 Aligned_cols=54 Identities=24% Similarity=0.556 Sum_probs=45.8
Q ss_pred CCCCCccccccccccccCcEEcc-CCCccchhhHhhhhhhcCCCCCCCCCCcccCC
Q 039490 133 AGGGEFFDCNICLDMARDPVLTC-CGHLFCWSCFYQLPYAYRNVKECPACNGEVTD 187 (423)
Q Consensus 133 ~~~~e~~~C~ICle~~~~pv~~~-CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~ 187 (423)
....+.+.|+||++.+.+|+.++ |||+||..||..|+.. .....||+||+.+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE-SDEHTCPTCHQNDVS 64 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHH-SSSSCCSSSCCSSCC
T ss_pred ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHh-cCCCcCCCCCCcCCC
Confidence 34467889999999999999999 9999999999999863 335789999997543
No 12
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.8e-13 Score=112.28 Aligned_cols=71 Identities=18% Similarity=0.372 Sum_probs=58.6
Q ss_pred CCCccccccccccccCcEEcc-CCCccchhhHhhhhhhc---CCCCCCCC--CCcc-cCCCCceecccCCCchhhhhh
Q 039490 135 GGEFFDCNICLDMARDPVLTC-CGHLFCWSCFYQLPYAY---RNVKECPA--CNGE-VTDASIIPIYGNGNSNDLQKL 205 (423)
Q Consensus 135 ~~e~~~C~ICle~~~~pv~~~-CGH~FC~~Ci~~~~~~~---~~~~~CP~--Cr~~-i~~~~l~~~~~~~~~~~~~k~ 205 (423)
..+.+.||||+++|.+||+++ |||+||+.||..||... .....||+ |+.. +...+++++..+...+..++.
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~ 81 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNK 81 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHT
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHH
Confidence 356789999999999999995 99999999999998743 24578999 9887 888899999887666655543
No 13
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=4.2e-13 Score=102.34 Aligned_cols=54 Identities=28% Similarity=0.621 Sum_probs=47.3
Q ss_pred CCCccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCc
Q 039490 135 GGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASI 190 (423)
Q Consensus 135 ~~e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l 190 (423)
..+.+.|+||++.+.+|+.++|||.||..||..|+. .....||+||+.+...++
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLS--SSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHT--TSSCCCTTTCCCCCTTTC
T ss_pred CCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHH--hCcCCCCCCCcCCChhhc
Confidence 356789999999999999999999999999999964 456789999999987654
No 14
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.36 E-value=2.5e-13 Score=113.79 Aligned_cols=67 Identities=27% Similarity=0.661 Sum_probs=55.8
Q ss_pred CccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCceecccCCCchhhh
Q 039490 137 EFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIYGNGNSNDLQ 203 (423)
Q Consensus 137 e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~ 203 (423)
+.+.|+||++.+.+|+.++|||.||..||..|+........||+||..+...++.++..+....+..
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~ 86 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEEL 86 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHH
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHH
Confidence 4568999999999999999999999999999987444456899999999988888877765554433
No 15
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.36 E-value=1.3e-13 Score=114.19 Aligned_cols=61 Identities=26% Similarity=0.610 Sum_probs=52.0
Q ss_pred CCccccccccccccCcEE-ccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCceecccCCC
Q 039490 136 GEFFDCNICLDMARDPVL-TCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIYGNGN 198 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~-~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~ 198 (423)
.+.+.|+||++.+.+|+. ++|||.||..||..|+... ...||+||.++...++.++..+..
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~l~~~~~~~~ 81 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ--RAQCPHCRAPLQLRELVNCRWAEE 81 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT--CSBCTTTCCBCCGGGCEECTTHHH
T ss_pred CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC--cCCCCCCCCcCCHHHhHhhHHHHH
Confidence 456799999999999999 9999999999999997632 268999999998888877765543
No 16
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.34 E-value=1.9e-13 Score=117.24 Aligned_cols=60 Identities=25% Similarity=0.491 Sum_probs=50.0
Q ss_pred CccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCC-CCceecccCCC
Q 039490 137 EFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTD-ASIIPIYGNGN 198 (423)
Q Consensus 137 e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~-~~l~~~~~~~~ 198 (423)
+.+.|+||++.+.+|+.++|||+||..||..|+. .....||+||..+.. ..+.+++.+.+
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~~~~~~~~~~n~~l~~ 111 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFR--AQVFSCPACRYDLGRSYAMQVNQPLQT 111 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHH--TTCCBCTTTCCBCCTTCCCCCCHHHHH
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHh--HCcCCCCCCCccCCCCCCCCCCHHHHH
Confidence 5578999999999999999999999999999976 345689999999976 55666655443
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=9.3e-13 Score=105.47 Aligned_cols=57 Identities=30% Similarity=0.643 Sum_probs=48.4
Q ss_pred CCCCccccccccccccC----cEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCc
Q 039490 134 GGGEFFDCNICLDMARD----PVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASI 190 (423)
Q Consensus 134 ~~~e~~~C~ICle~~~~----pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l 190 (423)
...+.+.|+||++.+.+ |++++|||.||..|+..|+........||+||..+...++
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSL 71 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence 34567899999999998 9999999999999999998754456789999999876543
No 18
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.33 E-value=2.3e-13 Score=104.74 Aligned_cols=56 Identities=34% Similarity=0.774 Sum_probs=49.4
Q ss_pred CCccccccccccccCc-------EEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCceecc
Q 039490 136 GEFFDCNICLDMARDP-------VLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIY 194 (423)
Q Consensus 136 ~e~~~C~ICle~~~~p-------v~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l~~~~ 194 (423)
.+.+.|+||++.+.+| +.++|||.||..||..|+. ....||+||..+...++.++|
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~---~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH---HCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH---cCCCCCCCCCccChhheeecc
Confidence 4567999999999887 8899999999999999976 346899999999998888776
No 19
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.32 E-value=5.9e-13 Score=100.16 Aligned_cols=55 Identities=33% Similarity=0.789 Sum_probs=48.7
Q ss_pred CccccccccccccCc-------EEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCceecc
Q 039490 137 EFFDCNICLDMARDP-------VLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIY 194 (423)
Q Consensus 137 e~~~C~ICle~~~~p-------v~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l~~~~ 194 (423)
+.+.|+||++.+.++ +.++|||.||..|+..|+.. ...||+||..+...++.++|
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH---CSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc---CCCCCCCCccCCccceeeee
Confidence 457899999999887 78999999999999999763 67899999999998888876
No 20
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=6.4e-13 Score=102.89 Aligned_cols=52 Identities=29% Similarity=0.688 Sum_probs=45.1
Q ss_pred CCccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCc
Q 039490 136 GEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASI 190 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l 190 (423)
.+.+.|+||++.+.+|+.++|||.||..||..|+. ....||+||..+...++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASW---LGKRCALCRQEIPEDFL 64 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTT---CSSBCSSSCCBCCHHHH
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHH---CCCcCcCcCchhCHhhc
Confidence 46679999999999999999999999999999954 45789999999875443
No 21
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.32 E-value=9.7e-13 Score=100.01 Aligned_cols=57 Identities=26% Similarity=0.567 Sum_probs=48.5
Q ss_pred Cccccccccc-cccCc----EEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCceeccc
Q 039490 137 EFFDCNICLD-MARDP----VLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIYG 195 (423)
Q Consensus 137 e~~~C~ICle-~~~~p----v~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~ 195 (423)
+++.|+||++ .+.+| ++++|||+||..||..|+. .....||+||+.+...++.+++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~~~~~~~~~~~~ 63 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV--RGAGNCPECGTPLRKSNFRVQLF 63 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH--TTSSSCTTTCCCCSSCCCEEECC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH--cCCCcCCCCCCccccccceeecc
Confidence 3568999999 88888 5689999999999999965 34678999999999988887754
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=9.5e-13 Score=104.42 Aligned_cols=50 Identities=30% Similarity=0.588 Sum_probs=44.3
Q ss_pred CCCCccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccC
Q 039490 134 GGGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVT 186 (423)
Q Consensus 134 ~~~e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~ 186 (423)
...+.+.|+||++.+.+|++++|||+||..||..|+. ....||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFR---ATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHH---HCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHH---CCCcCCCcCcccc
Confidence 3456789999999999999999999999999999975 3678999999886
No 23
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.7e-12 Score=98.00 Aligned_cols=48 Identities=38% Similarity=0.754 Sum_probs=42.0
Q ss_pred CCCCccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCC
Q 039490 134 GGGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPAC 181 (423)
Q Consensus 134 ~~~e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~C 181 (423)
...+.+.|+||++.+.+|++++|||+||..||..|++.......||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345678999999999999999999999999999998744456789998
No 24
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.30 E-value=3.2e-13 Score=111.22 Aligned_cols=64 Identities=19% Similarity=0.447 Sum_probs=53.7
Q ss_pred CccccccccccccCcEEc-cCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCceecccCCCchhhh
Q 039490 137 EFFDCNICLDMARDPVLT-CCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIYGNGNSNDLQ 203 (423)
Q Consensus 137 e~~~C~ICle~~~~pv~~-~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~ 203 (423)
+.+.|+||++.+.+|+.+ +|||.||..||..|+. ....||+||..+...++.+++.+.+.+...
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~ 85 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS---YKTQCPTCCVTVTEPDLKNNRILDELVKSL 85 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT---TCCBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH---CCCCCCCCCCcCChhhCCcCHHHHHHHHHH
Confidence 467999999999999987 8999999999999965 457899999999887788877665554443
No 25
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.29 E-value=2.9e-13 Score=120.48 Aligned_cols=64 Identities=28% Similarity=0.480 Sum_probs=52.0
Q ss_pred CCccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCC-CceecccCCCchh
Q 039490 136 GEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDA-SIIPIYGNGNSND 201 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~-~l~~~~~~~~~~~ 201 (423)
.+.+.|+||++.+.+|++++|||+||..||..|+. .....||+||..+... .+.+++.+.+++.
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~ 140 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFK--AQVFSCPACRHDLGQNYIMIPNEILQTLLD 140 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHH--TTCCBCTTTCCBCCTTCCCCBCHHHHHHHH
T ss_pred ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHH--hCCCcCCCCCccCCCCCCCCCCHHHHHHHH
Confidence 35679999999999999999999999999999976 3456899999999876 5666655544433
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.28 E-value=9.3e-13 Score=115.21 Aligned_cols=47 Identities=28% Similarity=0.661 Sum_probs=42.2
Q ss_pred ccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCC
Q 039490 138 FFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTD 187 (423)
Q Consensus 138 ~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~ 187 (423)
++.|+||++.+.+|++++|||+||..||..|+. ....||+||+++..
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~---~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMK---RKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTT---TCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCceECCCCCCccHHHHHHHHH---cCCcCCCCCCcCCC
Confidence 468999999999999999999999999999954 56789999998864
No 27
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.26 E-value=1.1e-12 Score=126.08 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=57.0
Q ss_pred CCCCccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCceecccCCCchhhh
Q 039490 134 GGGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIYGNGNSNDLQ 203 (423)
Q Consensus 134 ~~~e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~ 203 (423)
...+.+.||||++.|.+||+++|||+||+.||..|+.. ....||+|+.++...++++|..+.+.+..+
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~--~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~ 271 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQR--VGHFNPVTRSPLTQEQLIPNLAMKEVIDAF 271 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHH--TCSSCTTTCCCCCGGGCEECHHHHHHHHHH
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHH--CCCCCcCCCCCCchhcCcccHHHHHHHHHH
Confidence 33578899999999999999999999999999999863 234499999999988899988776655544
No 28
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3.5e-12 Score=94.22 Aligned_cols=48 Identities=29% Similarity=0.699 Sum_probs=41.7
Q ss_pred CCCCccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCC
Q 039490 134 GGGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPAC 181 (423)
Q Consensus 134 ~~~e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~C 181 (423)
...+.+.|+||++.+.+|++++|||+||..||..|+........||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345678999999999999999999999999999997644567889998
No 29
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.25 E-value=1.5e-12 Score=119.07 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=58.2
Q ss_pred CCCCccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCceecccCCCchhhh
Q 039490 134 GGGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIYGNGNSNDLQ 203 (423)
Q Consensus 134 ~~~e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~ 203 (423)
...+.+.||||+++|.+||+++|||+||..||..|+... ...||+|+.++...+++||..+.+.+..+
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~--~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~ 169 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV--GHFDPVTRSPLTQDQLIPNLAMKEVIDAF 169 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT--CSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhC--CCCCCCCcCCCChhhCcchHHHHHHHHHH
Confidence 446889999999999999999999999999999998732 23799999999998999998876655544
No 30
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.24 E-value=1.1e-12 Score=111.55 Aligned_cols=60 Identities=22% Similarity=0.487 Sum_probs=51.3
Q ss_pred CccccccccccccCcEEc-cCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCceecccCCCchh
Q 039490 137 EFFDCNICLDMARDPVLT-CCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIYGNGNSND 201 (423)
Q Consensus 137 e~~~C~ICle~~~~pv~~-~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~ 201 (423)
+.+.|+||++.+.+|+++ +|||+||..||..|+. ..||+||..+...++.+++.+.+++.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-----~~CP~Cr~~~~~~~~~~n~~l~~l~~ 81 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-----TGCPVCYTPAWIQDLKINRQLDSMIQ 81 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-----TBCSSSCCBCSCSSCCCCHHHHHHHH
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-----CCCcCCCCcCccccccccHHHHHHHH
Confidence 467999999999999998 9999999999999954 78999999998777877776655443
No 31
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.24 E-value=5.1e-12 Score=99.26 Aligned_cols=57 Identities=23% Similarity=0.392 Sum_probs=46.7
Q ss_pred CCCccccccccccccCc---EEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCceecc
Q 039490 135 GGEFFDCNICLDMARDP---VLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIY 194 (423)
Q Consensus 135 ~~e~~~C~ICle~~~~p---v~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l~~~~ 194 (423)
..+...|+||++.|..+ +.++|||.||..||..|+. ....||+||+.+...++.++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~---~~~~CP~Cr~~~~~~~~~~~~ 71 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE---QHDSCPVCRKSLTGQNTATNP 71 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT---TTCSCTTTCCCCCCSCSCCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH---cCCcCcCcCCccCCcccCCCC
Confidence 34567999999999765 4579999999999999964 457899999999887766553
No 32
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.23 E-value=1.5e-12 Score=108.87 Aligned_cols=50 Identities=26% Similarity=0.556 Sum_probs=44.2
Q ss_pred CCccccccccccccCcEEc-cCCCccchhhHhhhhhhcCCCCCCCCCCcccCCC
Q 039490 136 GEFFDCNICLDMARDPVLT-CCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDA 188 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~~-~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~ 188 (423)
.+.+.|+||++.+.+|+.+ +|||+||..||..|+. ....||.|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE---TSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHT---SCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHH---hCCcCcCCCcccccc
Confidence 3567999999999999987 9999999999999965 358899999998865
No 33
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=4.8e-12 Score=96.54 Aligned_cols=50 Identities=30% Similarity=0.723 Sum_probs=43.2
Q ss_pred CCCccccccccccccCc-------EEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCC
Q 039490 135 GGEFFDCNICLDMARDP-------VLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTD 187 (423)
Q Consensus 135 ~~e~~~C~ICle~~~~p-------v~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~ 187 (423)
..+.+.|+||++.+.++ ++++|||.||..||..|+.. ...||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH---CSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc---CCCCCCCCCccCc
Confidence 35677999999999887 88999999999999999763 5689999998764
No 34
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=6.6e-12 Score=96.56 Aligned_cols=52 Identities=29% Similarity=0.635 Sum_probs=44.7
Q ss_pred CCCccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCc
Q 039490 135 GGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASI 190 (423)
Q Consensus 135 ~~e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l 190 (423)
..+.+.|+||++.+.+ +.++|||.||..|+..|+. ....||+||..+...+.
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~---~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD---RHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC---CCSSCHHHHHCTTCCCC
T ss_pred CCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH---CcCcCCCcCCcccCCCc
Confidence 3456799999999999 8899999999999999944 67889999999876543
No 35
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.19 E-value=2.2e-12 Score=115.94 Aligned_cols=62 Identities=31% Similarity=0.557 Sum_probs=49.5
Q ss_pred CCCccccccccccccCcEEc-cCCCccchhhHhhhhhhcCCCCCCCCCCcccCC-CCceecccCCC
Q 039490 135 GGEFFDCNICLDMARDPVLT-CCGHLFCWSCFYQLPYAYRNVKECPACNGEVTD-ASIIPIYGNGN 198 (423)
Q Consensus 135 ~~e~~~C~ICle~~~~pv~~-~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~-~~l~~~~~~~~ 198 (423)
..+.+.|+||++.+.+|+.+ +|||+||..||..|+. .....||+||..+.. ..+.+++.+..
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~~~~~~~l~~~~~l~~ 114 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALR--SGNKECPTCRKKLVSKRSLRPDPNFDA 114 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH--TTCCBCTTTCCBCCSGGGEEECHHHHH
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHH--hCcCCCCCCCCcCCCcccCCcCHHHHH
Confidence 34678999999999999987 9999999999999976 346789999999854 44555554433
No 36
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.18 E-value=8.1e-12 Score=92.53 Aligned_cols=46 Identities=28% Similarity=0.597 Sum_probs=40.9
Q ss_pred CCccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCC
Q 039490 136 GEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTD 187 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~ 187 (423)
.+.+.|+||++.+.+|++++|||+||..|+..| ...||+||+.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS------GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS------SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC------CCCCCcCCcEeec
Confidence 467899999999999999999999999999874 5689999998764
No 37
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.18 E-value=6.3e-12 Score=106.21 Aligned_cols=51 Identities=27% Similarity=0.657 Sum_probs=44.4
Q ss_pred CCCccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCC
Q 039490 135 GGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTD 187 (423)
Q Consensus 135 ~~e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~ 187 (423)
..+++.|+||++.+.+|+.++|||+||..||..|+. .....||+||..+..
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVE--KASLCCPFCRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCC--TTTSBCTTTCCBCHH
T ss_pred CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHh--HCcCCCCCCCcccCc
Confidence 356789999999999999999999999999999964 346789999998863
No 38
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.16 E-value=1.4e-11 Score=104.78 Aligned_cols=60 Identities=28% Similarity=0.529 Sum_probs=50.0
Q ss_pred CCCCccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCceeccc
Q 039490 134 GGGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIYG 195 (423)
Q Consensus 134 ~~~e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~ 195 (423)
...+.+.|+||++.+.+|+.++|||+||..||..|+.. ....||+||..+...++.++..
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~~~~~~~~ 73 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRD--AGHKCPVDNEILLENQLFPDNF 73 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH--HCSBCTTTCCBCCGGGCEECHH
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhh--CCCCCCCCCCCcCHHhcccCHH
Confidence 44677899999999999999999999999999999763 2348999999998766665543
No 39
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.15 E-value=2.9e-11 Score=88.44 Aligned_cols=48 Identities=27% Similarity=0.542 Sum_probs=40.3
Q ss_pred CCccccccccccccC---cEEcc-CCCccchhhHhhhhhhcCCCCCCCCCCcccC
Q 039490 136 GEFFDCNICLDMARD---PVLTC-CGHLFCWSCFYQLPYAYRNVKECPACNGEVT 186 (423)
Q Consensus 136 ~e~~~C~ICle~~~~---pv~~~-CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~ 186 (423)
++...|+||++.+.+ ++.++ |||.||..|+..|++ ....||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~---~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG---SHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT---TCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHH---cCCcCcCCCCEeE
Confidence 355689999999987 67776 999999999999954 4678999998764
No 40
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.14 E-value=8e-12 Score=119.87 Aligned_cols=70 Identities=17% Similarity=0.303 Sum_probs=58.2
Q ss_pred CCCCCccccccccccccCcEE-ccCCCccchhhHhhhhhhcCCCCCCCC--CCcccCCCCceecccCCCchhhh
Q 039490 133 AGGGEFFDCNICLDMARDPVL-TCCGHLFCWSCFYQLPYAYRNVKECPA--CNGEVTDASIIPIYGNGNSNDLQ 203 (423)
Q Consensus 133 ~~~~e~~~C~ICle~~~~pv~-~~CGH~FC~~Ci~~~~~~~~~~~~CP~--Cr~~i~~~~l~~~~~~~~~~~~~ 203 (423)
......+.||||+++|.+||. +.|||+||+.||..||.. .+...||+ |++.+...++.++..+.+.+...
T Consensus 176 ~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~-~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~ 248 (267)
T 3htk_C 176 EGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQG-YTTRDCPQAACSQVVSMRDFVRDPIMELRCKIA 248 (267)
T ss_dssp CSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTT-CSCEECSGGGCSCEECGGGEEECHHHHHHHHHH
T ss_pred cCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHh-CCCCCCCcccccCcCchhhCCcCHHHHHHHHHH
Confidence 344678999999999999998 599999999999999863 34578999 99999999999988776554443
No 41
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.14 E-value=2.8e-11 Score=88.45 Aligned_cols=47 Identities=28% Similarity=0.664 Sum_probs=40.0
Q ss_pred CccccccccccccC----cEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccC
Q 039490 137 EFFDCNICLDMARD----PVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVT 186 (423)
Q Consensus 137 e~~~C~ICle~~~~----pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~ 186 (423)
+...|+||++.+.+ ++.++|||.||..||..|+.. ...||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE---GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH---TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc---CCcCCCCCCcCC
Confidence 45689999999865 677999999999999999763 388999998764
No 42
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.13 E-value=2e-11 Score=93.58 Aligned_cols=50 Identities=30% Similarity=0.552 Sum_probs=40.9
Q ss_pred CCCcccccccccccc---CcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCC
Q 039490 135 GGEFFDCNICLDMAR---DPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTD 187 (423)
Q Consensus 135 ~~e~~~C~ICle~~~---~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~ 187 (423)
......|+||++.+. .++.++|||.||..||..|+.. ...||+||..+..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~---~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT---NKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH---CSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc---CCCCcCcCccccC
Confidence 345678999999885 3467999999999999999763 4579999998864
No 43
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.13 E-value=1.7e-11 Score=104.84 Aligned_cols=58 Identities=33% Similarity=0.724 Sum_probs=50.8
Q ss_pred CCccccccccccccCc-------EEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCceecccC
Q 039490 136 GEFFDCNICLDMARDP-------VLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIYGN 196 (423)
Q Consensus 136 ~e~~~C~ICle~~~~p-------v~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~ 196 (423)
.+.+.|+||++.+.+| +.++|||+||..||..|++ ....||+||+.+....+.+++..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~---~~~~CP~Cr~~~~~~~l~~l~i~ 69 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NANTCPTCRKKINHKRYHPIYIG 69 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT---TCSBCTTTCCBCTTTCEEECBCS
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH---hCCCCCCCCCcCccccccccccC
Confidence 3567999999999988 8899999999999999965 45699999999999888887754
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.12 E-value=1.6e-11 Score=103.94 Aligned_cols=54 Identities=30% Similarity=0.637 Sum_probs=46.4
Q ss_pred CccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCcee
Q 039490 137 EFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIP 192 (423)
Q Consensus 137 e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l~~ 192 (423)
+.+.|+||++.+.+|+.++|||.||..||..|+.. ....||+||..+...++.+
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~~~~~ 75 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKV--MGSYCPSCRYPCFPTDLES 75 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH--TCSBCTTTCCBCCGGGCBC
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhH--CcCcCCCCCCCCCHhhccc
Confidence 46789999999999999999999999999999763 2568999999988765543
No 45
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.11 E-value=3e-11 Score=98.17 Aligned_cols=49 Identities=22% Similarity=0.424 Sum_probs=41.7
Q ss_pred CCccccccccccccC---cEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCC
Q 039490 136 GEFFDCNICLDMARD---PVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTD 187 (423)
Q Consensus 136 ~e~~~C~ICle~~~~---pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~ 187 (423)
.+...|+||++.+.. ++.++|||.||..||..|+. ....||+||..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~---~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ---KSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT---TTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH---cCCcCcCcCccCCC
Confidence 456789999999877 66789999999999999964 45689999998764
No 46
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.10 E-value=5.2e-11 Score=94.48 Aligned_cols=54 Identities=20% Similarity=0.541 Sum_probs=43.4
Q ss_pred CCCcccccccccccc--CcEEcc--CCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCc
Q 039490 135 GGEFFDCNICLDMAR--DPVLTC--CGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASI 190 (423)
Q Consensus 135 ~~e~~~C~ICle~~~--~pv~~~--CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l 190 (423)
.++++.||||++.+. ++++++ |||.||..|+..+|. .....||.||+++....+
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~--~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRT--DENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTT--SSCSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHh--cCCCCCCCCCCccCCCch
Confidence 456789999999884 445555 999999999999864 356789999999987554
No 47
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.09 E-value=2.5e-11 Score=92.69 Aligned_cols=47 Identities=28% Similarity=0.600 Sum_probs=40.9
Q ss_pred CccccccccccccCc-EEccCCCccchhhHhhhhhhcCCCCCCCCCCcccC
Q 039490 137 EFFDCNICLDMARDP-VLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVT 186 (423)
Q Consensus 137 e~~~C~ICle~~~~p-v~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~ 186 (423)
....|+||++.+.++ +.++|||.||..|+..|+. ....||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~---~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIR---QNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHH---HSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHh---CcCcCcCCChhhH
Confidence 456899999999997 6789999999999999975 3478999999886
No 48
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=2.9e-11 Score=94.37 Aligned_cols=49 Identities=22% Similarity=0.440 Sum_probs=41.6
Q ss_pred CCccccccccccccCc---EEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCC
Q 039490 136 GEFFDCNICLDMARDP---VLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTD 187 (423)
Q Consensus 136 ~e~~~C~ICle~~~~p---v~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~ 187 (423)
.+...|+||++.+..+ +.++|||.||..||..|+.. ...||+||+.+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~---~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA---NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH---CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc---CCcCcCcCCcCCC
Confidence 4566899999999877 66899999999999999763 4689999998764
No 49
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.07 E-value=5.2e-11 Score=115.40 Aligned_cols=104 Identities=6% Similarity=-0.087 Sum_probs=68.4
Q ss_pred CchhhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhC-CCCccccc---------chhcccCCCCCcceEEEec
Q 039490 219 LARRIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSL-DLDAAVRS---------GELEVNDPLLHISRVLPAS 288 (423)
Q Consensus 219 ~stKieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~-gi~~~~~d---------~~l~~f~~~dp~~~VLL~S 288 (423)
.+.|++.|.++|.... ..+.|.|||+||+.++++|+..|... |+.+...+ ..++.| +.++.+.|||+|
T Consensus 94 ~s~K~~~L~~ll~~~~-~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F-~~~~~~~v~L~s 171 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEAL-DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKF-QNNPSVKFIVLS 171 (271)
T ss_dssp TCHHHHHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHH-HHCTTCCEEEEE
T ss_pred cCHHHHHHHHHHHHHH-hCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHh-cCCCCCCEEEEe
Confidence 3678888887776542 14569999999999999999999885 88866544 456889 666678899999
Q ss_pred ccccccccchhc-------hhhhhhhccccceeeccccCcccc
Q 039490 289 ISSLSSALTSAM-------DSAERLVGDLEAYINSDNLRRNHQ 324 (423)
Q Consensus 289 LkaggvGLN~~l-------~~A~~~~~~~qa~~r~hriGq~~~ 324 (423)
.++||.|||++- ++-|.+..+.||+.|+||+||...
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~ 214 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRN 214 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------C
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCc
Confidence 999999999543 444444555799999999997553
No 50
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.05 E-value=8e-11 Score=99.03 Aligned_cols=50 Identities=26% Similarity=0.529 Sum_probs=40.7
Q ss_pred ccccccccccccCcE------------------EccCCCccchhhHhhhhhhc--CCCCCCCCCCcccCC
Q 039490 138 FFDCNICLDMARDPV------------------LTCCGHLFCWSCFYQLPYAY--RNVKECPACNGEVTD 187 (423)
Q Consensus 138 ~~~C~ICle~~~~pv------------------~~~CGH~FC~~Ci~~~~~~~--~~~~~CP~Cr~~i~~ 187 (423)
+..|+||++.|..+. +++|||.||..||..|+... .....||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 358999999997654 68999999999999997522 346789999998764
No 51
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=6.8e-11 Score=91.82 Aligned_cols=49 Identities=27% Similarity=0.503 Sum_probs=40.5
Q ss_pred CCccccccccccccCcE---EccCCCccchhhHhhhhhhcCCCCCCCCCCcccCC
Q 039490 136 GEFFDCNICLDMARDPV---LTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTD 187 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv---~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~ 187 (423)
.+...|+||++.+..+. .++|||.||..||..|+.. ...||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~---~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV---RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH---CSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc---CCcCCCcCccccc
Confidence 45678999999997663 4599999999999999763 3589999998764
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.04 E-value=3.4e-11 Score=105.95 Aligned_cols=52 Identities=25% Similarity=0.559 Sum_probs=44.7
Q ss_pred CCCccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCC
Q 039490 135 GGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDA 188 (423)
Q Consensus 135 ~~e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~ 188 (423)
..+.+.|+||++.+.+|+.++|||.||..||..|+. .....||+||.++...
T Consensus 28 l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~--~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILS--SGPQNCAACVHEGIYE 79 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGG--GSCEECHHHHHTTCCC
T ss_pred CCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHh--cCCCCCCCCCCccccc
Confidence 457789999999999999999999999999999975 3445899999986543
No 53
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.03 E-value=9.6e-11 Score=129.25 Aligned_cols=106 Identities=11% Similarity=0.048 Sum_probs=83.0
Q ss_pred CchhhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhCCCCcccccc---------hhcccCCCCCcceEEEecc
Q 039490 219 LARRIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSLDLDAAVRSG---------ELEVNDPLLHISRVLPASI 289 (423)
Q Consensus 219 ~stKieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~gi~~~~~d~---------~l~~f~~~dp~~~VLL~SL 289 (423)
.+.|+..|.++|.... ..+.|.|||+||+.+|++|+..|...|+.+.+.+| .++.|+..+....|||+|.
T Consensus 554 ~s~K~~~L~~lL~~~~-~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt 632 (800)
T 3mwy_W 554 SSGKMVLLDQLLTRLK-KDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLST 632 (800)
T ss_dssp TCHHHHHHHHHHHHHT-TTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEH
T ss_pred cChHHHHHHHHHHHHh-hCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEec
Confidence 3668888888876543 34679999999999999999999999999877665 4588944455667999999
Q ss_pred cccccccchhc-------hhhhhhhccccceeeccccCccccc
Q 039490 290 SSLSSALTSAM-------DSAERLVGDLEAYINSDNLRRNHQE 325 (423)
Q Consensus 290 kaggvGLN~~l-------~~A~~~~~~~qa~~r~hriGq~~~~ 325 (423)
+|||.|||++- ++-|.+..+.||+.|+|||||.+..
T Consensus 633 ~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V 675 (800)
T 3mwy_W 633 RAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHV 675 (800)
T ss_dssp HHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCE
T ss_pred ccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceE
Confidence 99999999643 3434444456999999999976544
No 54
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.98 E-value=1.5e-10 Score=90.56 Aligned_cols=44 Identities=36% Similarity=0.706 Sum_probs=39.9
Q ss_pred CccccccccccccCcEEccCCCc-cchhhHhhhhhhcCCCCCCCCCCcccCC
Q 039490 137 EFFDCNICLDMARDPVLTCCGHL-FCWSCFYQLPYAYRNVKECPACNGEVTD 187 (423)
Q Consensus 137 e~~~C~ICle~~~~pv~~~CGH~-FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~ 187 (423)
+.+.|+||++.+.++++++|||. ||..|+..| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-------ccCCCcCcCccC
Confidence 45689999999999999999999 999999987 679999998864
No 55
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.98 E-value=2.3e-10 Score=103.11 Aligned_cols=59 Identities=29% Similarity=0.567 Sum_probs=49.9
Q ss_pred CCCCccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCceecc
Q 039490 134 GGGEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIY 194 (423)
Q Consensus 134 ~~~e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l~~~~ 194 (423)
...+.+.|+||++.+.+|+.++|||+||..||..|+.. ....||+||..+...++.++.
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~~~~~~~ 72 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRD--AGHKCPVDNEILLENQLFPDN 72 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH--HCSBCTTTCCBCCGGGCEECH
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHh--CCCCCCCCccCcchhhhhhhH
Confidence 44678999999999999999999999999999999763 234899999999876666543
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.97 E-value=8.6e-11 Score=100.50 Aligned_cols=56 Identities=34% Similarity=0.774 Sum_probs=49.5
Q ss_pred CCccccccccccccCc-------EEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCceecc
Q 039490 136 GEFFDCNICLDMARDP-------VLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIY 194 (423)
Q Consensus 136 ~e~~~C~ICle~~~~p-------v~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l~~~~ 194 (423)
.+...|+||++.+.++ +.++|||.||..||..|++ ....||+||..+..++++++|
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~---~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH---HCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH---cCCCCCCCCCcCChhcceeee
Confidence 4567899999999876 7899999999999999976 356999999999999988886
No 57
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.92 E-value=3e-10 Score=122.43 Aligned_cols=104 Identities=11% Similarity=-0.026 Sum_probs=78.0
Q ss_pred chhhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhCCCCcccccc---------hhcccCCCCCc-ceEEEecc
Q 039490 220 ARRIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSLDLDAAVRSG---------ELEVNDPLLHI-SRVLPASI 289 (423)
Q Consensus 220 stKieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~gi~~~~~d~---------~l~~f~~~dp~-~~VLL~SL 289 (423)
+.|+..+..++......++.|.|||+||+.++++|+..|...|+.+...+| .++.| +..+. ..|||+|.
T Consensus 398 s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F-~~~~~~~~v~L~st 476 (644)
T 1z3i_X 398 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERF-NNPSSPEFIFMLSS 476 (644)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHH-HSTTCCCCEEEEEG
T ss_pred ChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHh-cCCCCCcEEEEEec
Confidence 567776666665443345679999999999999999999999999877665 45788 44333 45899999
Q ss_pred cccccccchhc-------hhhhhhhccccceeeccccCcccc
Q 039490 290 SSLSSALTSAM-------DSAERLVGDLEAYINSDNLRRNHQ 324 (423)
Q Consensus 290 kaggvGLN~~l-------~~A~~~~~~~qa~~r~hriGq~~~ 324 (423)
++||+|||++- ++-|....+.||+.|+|||||...
T Consensus 477 ~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 518 (644)
T 1z3i_X 477 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKT 518 (644)
T ss_dssp GGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSC
T ss_pred ccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCc
Confidence 99999999543 333333334699999999997653
No 58
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=4.4e-10 Score=89.40 Aligned_cols=48 Identities=27% Similarity=0.472 Sum_probs=38.3
Q ss_pred CccccccccccccC--------------cEEc-cCCCccchhhHhhhhhhcCCCCCCCCCCcccCC
Q 039490 137 EFFDCNICLDMARD--------------PVLT-CCGHLFCWSCFYQLPYAYRNVKECPACNGEVTD 187 (423)
Q Consensus 137 e~~~C~ICle~~~~--------------pv~~-~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~ 187 (423)
++..|+||++.+.+ ++.+ +|||.||..||.+|+. ....||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~---~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK---QNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT---TCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH---hCCCCCCcCCCcch
Confidence 44579999998866 3444 5999999999999955 45699999998764
No 59
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.91 E-value=2.1e-10 Score=86.76 Aligned_cols=55 Identities=24% Similarity=0.259 Sum_probs=48.8
Q ss_pred ccccccccccccCcEEc-cCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCceeccc
Q 039490 138 FFDCNICLDMARDPVLT-CCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIYG 195 (423)
Q Consensus 138 ~~~C~ICle~~~~pv~~-~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~ 195 (423)
.+.||||++.+.+||++ +|||+||+.||..|+.. ...||+++.++...+++++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~---~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD---TGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH---HSBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh---CCCCcCCcCCCChhhcEECcc
Confidence 47899999999999998 99999999999999763 345999999999999998864
No 60
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.88 E-value=5.1e-10 Score=113.33 Aligned_cols=52 Identities=31% Similarity=0.704 Sum_probs=44.7
Q ss_pred CccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCc
Q 039490 137 EFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASI 190 (423)
Q Consensus 137 e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l 190 (423)
....|+||++.+.+|+.++|||.||..|+..|+.. ....||+||..+....+
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~--~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES--EGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHH--TCSBCTTTCCBCCEEEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhc--CCCCCCCCCCccCCcee
Confidence 34689999999999999999999999999999652 56789999999876443
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=7e-10 Score=86.81 Aligned_cols=44 Identities=36% Similarity=0.706 Sum_probs=38.8
Q ss_pred CccccccccccccCcEEccCCCc-cchhhHhhhhhhcCCCCCCCCCCcccCC
Q 039490 137 EFFDCNICLDMARDPVLTCCGHL-FCWSCFYQLPYAYRNVKECPACNGEVTD 187 (423)
Q Consensus 137 e~~~C~ICle~~~~pv~~~CGH~-FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~ 187 (423)
+...|+||++.+.+|++++|||. ||..|+..+ ..||+||.++..
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-------DKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-------SBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-------CCCccCCceecC
Confidence 45689999999999999999999 999999653 679999998865
No 62
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.82 E-value=9e-10 Score=83.79 Aligned_cols=53 Identities=28% Similarity=0.656 Sum_probs=43.5
Q ss_pred CccccccccccccCcEEc--cCCCc-cchhhHhhhhhhcCCCCCCCCCCcccCCCCceecc
Q 039490 137 EFFDCNICLDMARDPVLT--CCGHL-FCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIY 194 (423)
Q Consensus 137 e~~~C~ICle~~~~pv~~--~CGH~-FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l~~~~ 194 (423)
++..|+||++.+.+++++ +|||. ||..|+..|+. ....||+||+++.. ++.+|
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~---~~~~CPiCR~~i~~--~i~i~ 62 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK---RNKPCPVCRQPIQM--IVLTY 62 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH---TTCCCTTTCCCCCE--EEEEE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH---cCCcCCCcCcchhc--eEeee
Confidence 455899999999999877 99999 89999999964 45689999998853 44444
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=7.2e-09 Score=79.80 Aligned_cols=45 Identities=29% Similarity=0.629 Sum_probs=39.7
Q ss_pred CCccccccccccccCcEEccCCCc-cchhhHhhhhhhcCCCCCCCCCCcccCC
Q 039490 136 GEFFDCNICLDMARDPVLTCCGHL-FCWSCFYQLPYAYRNVKECPACNGEVTD 187 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~~~CGH~-FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~ 187 (423)
.+...|+||++.+.+++++||||. ||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-------FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-------CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-------CCCCCCCCcchhc
Confidence 456789999999999999999999 99999985 2689999998865
No 64
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.76 E-value=1.7e-09 Score=81.94 Aligned_cols=47 Identities=30% Similarity=0.675 Sum_probs=40.4
Q ss_pred CccccccccccccCcEEc--cCCCc-cchhhHhhhhhhcCCCCCCCCCCcccC
Q 039490 137 EFFDCNICLDMARDPVLT--CCGHL-FCWSCFYQLPYAYRNVKECPACNGEVT 186 (423)
Q Consensus 137 e~~~C~ICle~~~~pv~~--~CGH~-FC~~Ci~~~~~~~~~~~~CP~Cr~~i~ 186 (423)
....|+||++.+.+++++ +|||. ||..|+..|+. ....||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~---~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKK---AGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHH---TTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHH---hCCcCCCcCchhh
Confidence 345899999999999877 99998 99999999864 3478999999885
No 65
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.76 E-value=3.7e-09 Score=88.60 Aligned_cols=46 Identities=26% Similarity=0.513 Sum_probs=38.4
Q ss_pred ccccccccccccCc------------------EEccCCCccchhhHhhhhhhcCCCCCCCCCCcccC
Q 039490 138 FFDCNICLDMARDP------------------VLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVT 186 (423)
Q Consensus 138 ~~~C~ICle~~~~p------------------v~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~ 186 (423)
...|+||++.|.++ +.++|||.||..||..|+. ....||+||+.+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~---~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK---TRQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT---TCSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH---cCCcCcCCCCcce
Confidence 45799999998765 3479999999999999955 4678999999864
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.75 E-value=2.5e-09 Score=84.85 Aligned_cols=44 Identities=34% Similarity=0.779 Sum_probs=39.3
Q ss_pred CccccccccccccCcEEccCCCc-cchhhHhhhhhhcCCCCCCCCCCcccCC
Q 039490 137 EFFDCNICLDMARDPVLTCCGHL-FCWSCFYQLPYAYRNVKECPACNGEVTD 187 (423)
Q Consensus 137 e~~~C~ICle~~~~pv~~~CGH~-FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~ 187 (423)
+...|+||++.+.++++++|||. ||..|+..| ..||+||..+..
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-------QSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-------SBCTTTCCBCCE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-------CcCCCCCchhhC
Confidence 34589999999999999999999 999999886 289999998875
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.62 E-value=4.1e-09 Score=85.81 Aligned_cols=53 Identities=23% Similarity=0.522 Sum_probs=41.1
Q ss_pred CCccccccccccccCcEEc---cCCCccchhhHhhhhhhc---C--CCCCCCC--CCcc--cCCC
Q 039490 136 GEFFDCNICLDMARDPVLT---CCGHLFCWSCFYQLPYAY---R--NVKECPA--CNGE--VTDA 188 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~~---~CGH~FC~~Ci~~~~~~~---~--~~~~CP~--Cr~~--i~~~ 188 (423)
.+.+.|+||++.+..+.++ +|||.||..|+..|+... . ....||. |+.. +...
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~ 67 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH
Confidence 3567999999999887543 799999999999998632 1 2457999 9987 5543
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.62 E-value=1.1e-08 Score=102.54 Aligned_cols=45 Identities=36% Similarity=0.856 Sum_probs=40.4
Q ss_pred CCccccccccccccCcEEccCCCc-cchhhHhhhhhhcCCCCCCCCCCcccCC
Q 039490 136 GEFFDCNICLDMARDPVLTCCGHL-FCWSCFYQLPYAYRNVKECPACNGEVTD 187 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~~~CGH~-FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~ 187 (423)
.+.+.|+||++.+.+|+.++|||. ||..|+..| ..||+||.++..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-------RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-------SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-------CcCCCCCCCccC
Confidence 356799999999999999999999 999999986 579999998864
No 69
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=3.1e-08 Score=78.81 Aligned_cols=52 Identities=23% Similarity=0.434 Sum_probs=41.9
Q ss_pred CCcccccccccccc--CcEEccCC-----CccchhhHhhhhhhcCCCCCCCCCCcccCCC
Q 039490 136 GEFFDCNICLDMAR--DPVLTCCG-----HLFCWSCFYQLPYAYRNVKECPACNGEVTDA 188 (423)
Q Consensus 136 ~e~~~C~ICle~~~--~pv~~~CG-----H~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~ 188 (423)
.+...|.||++.+. ++++++|+ |.|+..||.+|+.. .....||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~-~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS-SDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH-HCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh-CCCCCCCCCCCeeecC
Confidence 34568999998874 56789996 99999999999873 3456899999988653
No 70
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.54 E-value=1.1e-08 Score=87.27 Aligned_cols=46 Identities=28% Similarity=0.537 Sum_probs=0.4
Q ss_pred ccccccccccccCc-----------------E-EccCCCccchhhHhhhhhhcCCCCCCCCCCcccC
Q 039490 138 FFDCNICLDMARDP-----------------V-LTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVT 186 (423)
Q Consensus 138 ~~~C~ICle~~~~p-----------------v-~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~ 186 (423)
...|+||++.|.++ + .++|||.||..||..|+. ....||+||+++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~---~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK---TRQVCPLDNREWE 111 (117)
T ss_dssp C------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH---cCCcCCCCCCeee
Confidence 35899999998763 2 258999999999999955 4678999999865
No 71
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.53 E-value=4.8e-08 Score=96.92 Aligned_cols=107 Identities=7% Similarity=-0.029 Sum_probs=71.5
Q ss_pred CchhhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhCCCCcccccchhc--ccCCCCCcceEEEeccccccccc
Q 039490 219 LARRIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSLDLDAAVRSGELE--VNDPLLHISRVLPASISSLSSAL 296 (423)
Q Consensus 219 ~stKieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~gi~~~~~d~~l~--~f~~~dp~~~VLL~SLkaggvGL 296 (423)
.+.|+.-|.++|..... .+.|.++|||++.+||+||.-+...|+++.|.||... ..+.....+.++|++ ++||.|.
T Consensus 107 ~SGKf~~L~~LL~~l~~-~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k~~~~~~~i~Llt-sag~~gi 184 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQE-YETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAAANDFSCTVHLFS-SEGINFT 184 (328)
T ss_dssp TCHHHHHHHHHHHHHTT-SCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-------CCSEEEEEEE-SSCCCTT
T ss_pred cCccHHHHHHHHHHHHh-CCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhhcccCCceEEEEE-CCCCCCc
Confidence 37788888777765543 4669999999999999999999999999999998631 111112356777764 6888887
Q ss_pred chh------------chhhhhhhcc-ccceeeccccCccccccC
Q 039490 297 TSA------------MDSAERLVGD-LEAYINSDNLRRNHQEFS 327 (423)
Q Consensus 297 N~~------------l~~A~~~~~~-~qa~~r~hriGq~~~~~~ 327 (423)
|++ +|+-|..-.| +||++|.||||+.|.+++
T Consensus 185 n~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v 228 (328)
T 3hgt_A 185 KYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYA 228 (328)
T ss_dssp TSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------C
T ss_pred CcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcc
Confidence 632 2666666555 799999999964444443
No 72
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.46 E-value=6.3e-08 Score=100.09 Aligned_cols=104 Identities=7% Similarity=-0.058 Sum_probs=77.0
Q ss_pred CchhhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhC-CCCccc---------ccchhcccCCCCCcceEEEec
Q 039490 219 LARRIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSL-DLDAAV---------RSGELEVNDPLLHISRVLPAS 288 (423)
Q Consensus 219 ~stKieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~-gi~~~~---------~d~~l~~f~~~dp~~~VLL~S 288 (423)
.+.|+..+.+.+.... ..+.|.+||++|..+++.+...|... |+.+.. +...++.| +..+.+.|+|+|
T Consensus 323 ~s~K~~~l~~~l~~~~-~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F-~~~~~~~vil~s 400 (500)
T 1z63_A 323 RSGKMIRTMEIIEEAL-DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKF-QNNPSVKFIVLS 400 (500)
T ss_dssp TCHHHHHHHHHHHHHH-TTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHH-HHCTTCCCCEEE
T ss_pred cchhHHHHHHHHHHHH-ccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHh-cCCCCCCEEEEe
Confidence 4678888777776442 24679999999999999999999885 887554 34456889 666677899999
Q ss_pred ccccccccchhc-------hhhhhhhccccceeeccccCcccc
Q 039490 289 ISSLSSALTSAM-------DSAERLVGDLEAYINSDNLRRNHQ 324 (423)
Q Consensus 289 LkaggvGLN~~l-------~~A~~~~~~~qa~~r~hriGq~~~ 324 (423)
.++++.|||++- ++-+......|++.|+||+||...
T Consensus 401 t~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~ 443 (500)
T 1z63_A 401 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRN 443 (500)
T ss_dssp CCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSC
T ss_pred cccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCe
Confidence 999999999543 333444444799999999997653
No 73
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.26 E-value=1.1e-06 Score=68.71 Aligned_cols=50 Identities=22% Similarity=0.424 Sum_probs=40.3
Q ss_pred CCccccccccccccCcEE-ccCCCccchhhHhhhhhhcCCCCCCCCCCcccC
Q 039490 136 GEFFDCNICLDMARDPVL-TCCGHLFCWSCFYQLPYAYRNVKECPACNGEVT 186 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~-~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~ 186 (423)
+....|.||.+.+..... ..|+|.|+..||..|++. .....||+|+..+.
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~-~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQS-NAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTT-CSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHh-cCCCCCCCCcCcCC
Confidence 345689999999876554 489999999999999763 33478999998775
No 74
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.00 E-value=1.4e-06 Score=86.44 Aligned_cols=52 Identities=23% Similarity=0.510 Sum_probs=39.8
Q ss_pred CCccccccccccccC----cE----EccCCCccchhhHhhhhhhcCC--------CCCCCCCCcccCC
Q 039490 136 GEFFDCNICLDMARD----PV----LTCCGHLFCWSCFYQLPYAYRN--------VKECPACNGEVTD 187 (423)
Q Consensus 136 ~e~~~C~ICle~~~~----pv----~~~CGH~FC~~Ci~~~~~~~~~--------~~~CP~Cr~~i~~ 187 (423)
+....|+||++.+.+ |. ...|||.|+..|+.+|+..... ...||+|+.+++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 456789999998876 21 2479999999999999864322 2569999998863
No 75
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.92 E-value=4.6e-06 Score=68.42 Aligned_cols=46 Identities=26% Similarity=0.584 Sum_probs=38.9
Q ss_pred ccccccccccCc-EEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCC
Q 039490 140 DCNICLDMARDP-VLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTD 187 (423)
Q Consensus 140 ~C~ICle~~~~p-v~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~ 187 (423)
.|++|.-++..- .++||+|+||..|+..|.+ .....||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~--~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEK--KGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHH--TTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHh--ccCCCCcCcCCeeee
Confidence 699998887765 4789999999999999843 567889999998875
No 76
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.91 E-value=5.1e-06 Score=62.26 Aligned_cols=51 Identities=18% Similarity=0.327 Sum_probs=40.4
Q ss_pred CCccccccccccccCcEEccCC--C---ccchhhHhhhhhhcCCCCCCCCCCcccCC
Q 039490 136 GEFFDCNICLDMARDPVLTCCG--H---LFCWSCFYQLPYAYRNVKECPACNGEVTD 187 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~~~CG--H---~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~ 187 (423)
++...|.||++...++.++||. | .|+..|+.+|+.. ++...||+|+..+..
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~-~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI-SRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH-HTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHh-CCCCccCCCCCeeec
Confidence 3556899999887777778865 4 8999999999863 346789999988753
No 77
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=97.48 E-value=6.8e-05 Score=74.90 Aligned_cols=100 Identities=7% Similarity=0.014 Sum_probs=72.1
Q ss_pred CchhhHHHHHHHHhcC-CCCCCceEEcccchhHHHHHHHhhhhCCCCcccccc-----------------hhcccCCCCC
Q 039490 219 LARRIESVRQQLVNRR-PVSTPIEVRIQQFNSIVDAARHQTGSLDLDAAVRSG-----------------ELEVNDPLLH 280 (423)
Q Consensus 219 ~stKieaLr~~L~~~~-~~p~~K~iVFSQftsfLdlle~~L~~~gi~~~~~d~-----------------~l~~f~~~dp 280 (423)
...|++.+.+.|...- ..++.|.+||.++...++.+...|...|+......| .++.| +. .
T Consensus 341 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F-~~-~ 418 (494)
T 1wp9_A 341 DHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEF-AR-G 418 (494)
T ss_dssp SCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHH-HH-T
T ss_pred CChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHH-hc-C
Confidence 4668888888776531 135679999999999999999999999888665555 45677 33 3
Q ss_pred cceEEEecccccccccchhc-------hhhhhhhccccceeeccccCc
Q 039490 281 ISRVLPASISSLSSALTSAM-------DSAERLVGDLEAYINSDNLRR 321 (423)
Q Consensus 281 ~~~VLL~SLkaggvGLN~~l-------~~A~~~~~~~qa~~r~hriGq 321 (423)
.+.|| ++-++++.|||.+- ++.+......|++.|+||.|+
T Consensus 419 ~~~vL-v~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~ 465 (494)
T 1wp9_A 419 EFNVL-VATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP 465 (494)
T ss_dssp SCSEE-EECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC
T ss_pred CceEE-EECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC
Confidence 35564 55699999999542 322222233599999999995
No 78
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=97.05 E-value=0.00068 Score=76.30 Aligned_cols=98 Identities=14% Similarity=-0.008 Sum_probs=74.7
Q ss_pred CCCchhhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhh-hCCCCccc---------ccchhcccCCCCC-cceEE
Q 039490 217 RPLARRIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTG-SLDLDAAV---------RSGELEVNDPLLH-ISRVL 285 (423)
Q Consensus 217 ~~~stKieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~-~~gi~~~~---------~d~~l~~f~~~dp-~~~VL 285 (423)
.....|++.|.+.+.. .++.|.+||.++...++.+...|. ..|+.... +...++.| +... .+.||
T Consensus 485 ~~~~~K~~~L~~ll~~---~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F-~~g~~~~~vL 560 (968)
T 3dmq_A 485 WNFDPRVEWLMGYLTS---HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWF-AEEDTGAQVL 560 (968)
T ss_dssp TTTSHHHHHHHHHHHH---TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHH-HSTTSSCEEE
T ss_pred cCccHHHHHHHHHHHh---CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH-hCCCCcccEE
Confidence 4456789999888875 456799999999999999999999 46888554 44466888 4443 46777
Q ss_pred Eecccccccccchhc-----------hhhhhhhccccceeeccccCccc
Q 039490 286 PASISSLSSALTSAM-----------DSAERLVGDLEAYINSDNLRRNH 323 (423)
Q Consensus 286 L~SLkaggvGLN~~l-----------~~A~~~~~~~qa~~r~hriGq~~ 323 (423)
+.+ .+++.|||.+- +++.. .|++.|+||+||..
T Consensus 561 vaT-~v~~~GlDl~~~~~VI~~d~p~~~~~~----~Q~~GR~~R~Gq~~ 604 (968)
T 3dmq_A 561 LCS-EIGSEGRNFQFASHMVMFDLPFNPDLL----EQRIGRLDRIGQAH 604 (968)
T ss_dssp ECS-CCTTCSSCCTTCCEEECSSCCSSHHHH----HHHHHTTSCSSSCS
T ss_pred Eec-chhhcCCCcccCcEEEEecCCCCHHHH----HHHhhccccCCCCc
Confidence 655 99999999531 44443 59999999999765
No 79
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=96.67 E-value=0.002 Score=58.00 Aligned_cols=118 Identities=10% Similarity=-0.012 Sum_probs=72.3
Q ss_pred chhhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhCCCCccc---------ccchhcccCCCCCcceEEEeccc
Q 039490 220 ARRIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSLDLDAAV---------RSGELEVNDPLLHISRVLPASIS 290 (423)
Q Consensus 220 stKieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~gi~~~~---------~d~~l~~f~~~dp~~~VLL~SLk 290 (423)
..|++.|.++|.... ++.|.|||.......+.+...|+..|+.... +...++.| .+....||+.+ .
T Consensus 30 ~~K~~~L~~ll~~~~--~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f--~~g~~~vLvaT-~ 104 (185)
T 2jgn_A 30 SDKRSFLLDLLNATG--KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF--RSGKSPILVAT-A 104 (185)
T ss_dssp GGHHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHH--HHTSSSEEEEE-C
T ss_pred HHHHHHHHHHHHhcC--CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHH--HcCCCeEEEEc-C
Confidence 468888888887543 5679999999999999999999999988544 34456777 23455666555 8
Q ss_pred ccccccchhc-----------hhhhhhhccccceeeccccCccccccC---CCCccccchhhheeccCcc
Q 039490 291 SLSSALTSAM-----------DSAERLVGDLEAYINSDNLRRNHQEFS---HADTDSVSLISADVQAGSQ 346 (423)
Q Consensus 291 aggvGLN~~l-----------~~A~~~~~~~qa~~r~hriGq~~~~~~---~~~~~~~~~~~~~~~~~~~ 346 (423)
+++.|||.+- +.... .|.+.|++|.|+.-.--+ ..|..-+..|...++...|
T Consensus 105 ~~~~Gldi~~~~~VI~~d~p~s~~~~----~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 170 (185)
T 2jgn_A 105 VAARGLDISNVKHVINFDLPSDIEEY----VHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQ 170 (185)
T ss_dssp ------CCCSBSEEEESSCCSSHHHH----HHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTC
T ss_pred hhhcCCCcccCCEEEEeCCCCCHHHH----HHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccC
Confidence 8899998421 33333 499999999995432211 3334444444444444333
No 80
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.61 E-value=0.0015 Score=62.00 Aligned_cols=50 Identities=22% Similarity=0.403 Sum_probs=40.2
Q ss_pred CccccccccccccCcEEc-cCCCccchhhHhhhhhhcCCCCCCCCCCcccCC
Q 039490 137 EFFDCNICLDMARDPVLT-CCGHLFCWSCFYQLPYAYRNVKECPACNGEVTD 187 (423)
Q Consensus 137 e~~~C~ICle~~~~pv~~-~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~ 187 (423)
....|.||.+.....+.- .|+|.|+..|+..|++ ......||.|+.....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~-~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQ-SNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTT-TCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHH-hCCCCCCCCCCCCCCC
Confidence 356899999998876653 4999999999999976 3445789999987654
No 81
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=96.58 E-value=0.0005 Score=76.43 Aligned_cols=70 Identities=11% Similarity=-0.061 Sum_probs=60.2
Q ss_pred CCCCCccccccccccccCcEEccCC-CccchhhHhhhhhhcCCCCCCCCCCcccCCCCceecccCCCchhhhhh
Q 039490 133 AGGGEFFDCNICLDMARDPVLTCCG-HLFCWSCFYQLPYAYRNVKECPACNGEVTDASIIPIYGNGNSNDLQKL 205 (423)
Q Consensus 133 ~~~~e~~~C~ICle~~~~pv~~~CG-H~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~k~ 205 (423)
....++|.|||-++.+.+||+++.| ++|-+.+|..|+. ...+||+-|.+++..+++||+.+...+..+..
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~---~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~ 956 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLL---SDSTDPFNRMPLKLEDVTPNEELRQKILCFKK 956 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT---TCCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHh---cCCCCCCCCCCCCcccccccHHHHHHHHHHHH
Confidence 4556899999999999999999998 6999999999965 36789999999999999999988776666543
No 82
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=96.51 E-value=0.0031 Score=55.91 Aligned_cols=93 Identities=12% Similarity=-0.013 Sum_probs=69.5
Q ss_pred chhhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhCCCCccc---------ccchhcccCCCCCcceEEEeccc
Q 039490 220 ARRIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSLDLDAAV---------RSGELEVNDPLLHISRVLPASIS 290 (423)
Q Consensus 220 stKieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~gi~~~~---------~d~~l~~f~~~dp~~~VLL~SLk 290 (423)
..|++.|.+++... +..|.+||..+....+.+...|...|+.... +...++.| .+....||+.+ .
T Consensus 16 ~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f--~~g~~~vLvaT-~ 89 (172)
T 1t5i_A 16 NEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQF--KDFQRRILVAT-N 89 (172)
T ss_dssp GGHHHHHHHHHHHS---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH--HTTSCSEEEES-S
T ss_pred HHHHHHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHH--HCCCCcEEEEC-C
Confidence 45788888887644 3458999999999999999999999988544 33456788 34566777655 8
Q ss_pred ccccccchhc-----------hhhhhhhccccceeeccccCcc
Q 039490 291 SLSSALTSAM-----------DSAERLVGDLEAYINSDNLRRN 322 (423)
Q Consensus 291 aggvGLN~~l-----------~~A~~~~~~~qa~~r~hriGq~ 322 (423)
+++.|||.+- +.+.. .|.+.|++|.|+.
T Consensus 90 ~~~~Gldi~~~~~Vi~~d~p~~~~~~----~qr~GR~~R~g~~ 128 (172)
T 1t5i_A 90 LFGRGMDIERVNIAFNYDMPEDSDTY----LHRVARAGRFGTK 128 (172)
T ss_dssp CCSTTCCGGGCSEEEESSCCSSHHHH----HHHHHHHTGGGCC
T ss_pred chhcCcchhhCCEEEEECCCCCHHHH----HHHhcccccCCCC
Confidence 8999999531 33333 4999999999953
No 83
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=96.25 E-value=0.0085 Score=52.34 Aligned_cols=93 Identities=8% Similarity=0.050 Sum_probs=68.1
Q ss_pred chhhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhCCCCccc---------ccchhcccCCCCCcceEEEeccc
Q 039490 220 ARRIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSLDLDAAV---------RSGELEVNDPLLHISRVLPASIS 290 (423)
Q Consensus 220 stKieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~gi~~~~---------~d~~l~~f~~~dp~~~VLL~SLk 290 (423)
..|++.|..++... ...|.+||.......+.+...|...|+.... +...++.| + +....||+.+ .
T Consensus 20 ~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f-~-~g~~~vlv~T-~ 93 (163)
T 2hjv_A 20 ENKFSLLKDVLMTE---NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEF-K-RGEYRYLVAT-D 93 (163)
T ss_dssp GGHHHHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH-H-TTSCSEEEEC-G
T ss_pred HHHHHHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH-H-cCCCeEEEEC-C
Confidence 46788888887654 2358999999999999999999999988544 33456788 3 4456676544 8
Q ss_pred ccccccchh-----------chhhhhhhccccceeeccccCcc
Q 039490 291 SLSSALTSA-----------MDSAERLVGDLEAYINSDNLRRN 322 (423)
Q Consensus 291 aggvGLN~~-----------l~~A~~~~~~~qa~~r~hriGq~ 322 (423)
+++.|||.+ .+++.. .|.+.|++|.|+.
T Consensus 94 ~~~~Gld~~~~~~Vi~~~~p~~~~~~----~qr~GR~~R~g~~ 132 (163)
T 2hjv_A 94 VAARGIDIENISLVINYDLPLEKESY----VHRTGRTGRAGNK 132 (163)
T ss_dssp GGTTTCCCSCCSEEEESSCCSSHHHH----HHHTTTSSCTTCC
T ss_pred hhhcCCchhcCCEEEEeCCCCCHHHH----HHhccccCcCCCC
Confidence 888999843 133333 4889999999853
No 84
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.97 E-value=0.0025 Score=51.74 Aligned_cols=32 Identities=28% Similarity=0.551 Sum_probs=27.1
Q ss_pred Ccccccccccc-ccCcEE--ccCCCccchhhHhhh
Q 039490 137 EFFDCNICLDM-ARDPVL--TCCGHLFCWSCFYQL 168 (423)
Q Consensus 137 e~~~C~ICle~-~~~pv~--~~CGH~FC~~Ci~~~ 168 (423)
++..|+||.+. +.+++. +.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 35789999975 677877 899999999999983
No 85
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.90 E-value=0.0075 Score=61.79 Aligned_cols=78 Identities=12% Similarity=0.058 Sum_probs=49.1
Q ss_pred chhhHHHHHHHHhc-CCCCCCceEEcccchhHHHHHHHhhhhCCC---------------------CcccccchhcccCC
Q 039490 220 ARRIESVRQQLVNR-RPVSTPIEVRIQQFNSIVDAARHQTGSLDL---------------------DAAVRSGELEVNDP 277 (423)
Q Consensus 220 stKieaLr~~L~~~-~~~p~~K~iVFSQftsfLdlle~~L~~~gi---------------------~~~~~d~~l~~f~~ 277 (423)
..|++.|.+.|... ...+..|.|||.++....+.|...|...++ ....|...++.| +
T Consensus 370 ~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F-~ 448 (555)
T 3tbk_A 370 NPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAF-R 448 (555)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHH-h
Confidence 57888888877643 223467999999999999999999998742 123456688999 5
Q ss_pred CCCcceEEEecccccccccchh
Q 039490 278 LLHISRVLPASISSLSSALTSA 299 (423)
Q Consensus 278 ~dp~~~VLL~SLkaggvGLN~~ 299 (423)
.+....|| ++-.+++.|||.+
T Consensus 449 ~~g~~~vL-vaT~~~~~GlDlp 469 (555)
T 3tbk_A 449 ASGDNNIL-IATSVADEGIDIA 469 (555)
T ss_dssp ---CCSEE-EECCCTTCCEETT
T ss_pred cCCCeeEE-EEcchhhcCCccc
Confidence 54667776 4679999999954
No 86
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=95.76 E-value=0.02 Score=50.00 Aligned_cols=113 Identities=10% Similarity=0.069 Sum_probs=71.3
Q ss_pred hhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhCCCCccc---------ccchhcccCCCCCcceEEEeccccc
Q 039490 222 RIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSLDLDAAV---------RSGELEVNDPLLHISRVLPASISSL 292 (423)
Q Consensus 222 KieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~gi~~~~---------~d~~l~~f~~~dp~~~VLL~SLkag 292 (423)
|.+.|.+++... +..|.+||.......+.+...|...|+.... +...++.| .+....||+.+ .+.
T Consensus 17 K~~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f--~~g~~~vlv~T-~~~ 90 (165)
T 1fuk_A 17 KYECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEF--RSGSSRILIST-DLL 90 (165)
T ss_dssp HHHHHHHHHHHT---TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH--HTTSCSEEEEE-GGG
T ss_pred HHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHH--HcCCCEEEEEc-Chh
Confidence 788888877653 3468999999999999999999999888543 33456788 34556677554 788
Q ss_pred ccccchh-----------chhhhhhhccccceeeccccCccccccC---CCCccccchhhheeccC
Q 039490 293 SSALTSA-----------MDSAERLVGDLEAYINSDNLRRNHQEFS---HADTDSVSLISADVQAG 344 (423)
Q Consensus 293 gvGLN~~-----------l~~A~~~~~~~qa~~r~hriGq~~~~~~---~~~~~~~~~~~~~~~~~ 344 (423)
+.|+|.+ .+.+.. .|.+.|++|.|+.-.--+ ..|.+-+..|...+..+
T Consensus 91 ~~G~d~~~~~~Vi~~~~p~~~~~~----~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 152 (165)
T 1fuk_A 91 ARGIDVQQVSLVINYDLPANKENY----IHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQ 152 (165)
T ss_dssp TTTCCCCSCSEEEESSCCSSGGGG----GGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCC
T ss_pred hcCCCcccCCEEEEeCCCCCHHHH----HHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccC
Confidence 8898842 133333 488888888884322211 33444445554444433
No 87
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=95.73 E-value=0.0045 Score=56.07 Aligned_cols=92 Identities=14% Similarity=0.055 Sum_probs=64.2
Q ss_pred chhhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhCCCCccc---------ccchhcccCCCCCcceEEEeccc
Q 039490 220 ARRIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSLDLDAAV---------RSGELEVNDPLLHISRVLPASIS 290 (423)
Q Consensus 220 stKieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~gi~~~~---------~d~~l~~f~~~dp~~~VLL~SLk 290 (423)
..|++.|.+.|... ..|.|||.+.....+.+...|...|+.... +...++.| + +....||+.+ .
T Consensus 40 ~~K~~~L~~~l~~~----~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F-~-~g~~~vLvaT-~ 112 (191)
T 2p6n_A 40 EAKMVYLLECLQKT----PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF-R-EGKKDVLVAT-D 112 (191)
T ss_dssp GGHHHHHHHHHTTS----CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHH-H-HTSCSEEEEC-H
T ss_pred HHHHHHHHHHHHhC----CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH-h-cCCCEEEEEc-C
Confidence 46888888877543 348999999999999999999998888554 34456788 3 3455666554 7
Q ss_pred ccccccchh-----------chhhhhhhccccceeeccccCcc
Q 039490 291 SLSSALTSA-----------MDSAERLVGDLEAYINSDNLRRN 322 (423)
Q Consensus 291 aggvGLN~~-----------l~~A~~~~~~~qa~~r~hriGq~ 322 (423)
+++.|||.+ .+.... .|.+.|++|.|+.
T Consensus 113 ~~~~Gldi~~v~~VI~~d~p~~~~~~----~qr~GR~gR~g~~ 151 (191)
T 2p6n_A 113 VASKGLDFPAIQHVINYDMPEEIENY----VHRIGRTGCSGNT 151 (191)
T ss_dssp HHHTTCCCCCCSEEEESSCCSSHHHH----HHHHTTSCC---C
T ss_pred chhcCCCcccCCEEEEeCCCCCHHHH----HHHhCccccCCCC
Confidence 888898842 133333 4899999999853
No 88
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=95.58 E-value=0.009 Score=52.74 Aligned_cols=73 Identities=5% Similarity=-0.058 Sum_probs=54.2
Q ss_pred hhhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhCCCCccc---------ccchhcccCCCCCcceEEEecccc
Q 039490 221 RRIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSLDLDAAV---------RSGELEVNDPLLHISRVLPASISS 291 (423)
Q Consensus 221 tKieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~gi~~~~---------~d~~l~~f~~~dp~~~VLL~SLka 291 (423)
.|++.|..++... +..|.|||.......+.+...|...|+.... +...++.| + +....||+.+ .+
T Consensus 20 ~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f-~-~g~~~vLvaT-~~ 93 (175)
T 2rb4_A 20 DKYQALCNIYGSI---TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRF-R-DGKEKVLITT-NV 93 (175)
T ss_dssp HHHHHHHHHHTTS---CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHH-H-TTSCSEEEEC-CS
T ss_pred hHHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH-H-cCCCeEEEEe-cc
Confidence 3777777776532 4568999999999999999999999888544 34456788 3 4456666554 88
Q ss_pred cccccchh
Q 039490 292 LSSALTSA 299 (423)
Q Consensus 292 ggvGLN~~ 299 (423)
++.|||.+
T Consensus 94 ~~~Gid~~ 101 (175)
T 2rb4_A 94 CARGIDVK 101 (175)
T ss_dssp CCTTTCCT
T ss_pred hhcCCCcc
Confidence 89999953
No 89
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=93.84 E-value=0.0049 Score=54.30 Aligned_cols=120 Identities=8% Similarity=-0.010 Sum_probs=75.4
Q ss_pred chhhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhCCCCccc---------ccchhcccCCCCCcceEEEeccc
Q 039490 220 ARRIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSLDLDAAV---------RSGELEVNDPLLHISRVLPASIS 290 (423)
Q Consensus 220 stKieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~gi~~~~---------~d~~l~~f~~~dp~~~VLL~SLk 290 (423)
..|++.|.+++.. .++.|.|||.......+.+...|...|+.... +...++.| + +....||+ +-.
T Consensus 15 ~~k~~~l~~ll~~---~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f-~-~g~~~vLv-aT~ 88 (170)
T 2yjt_D 15 EHKTALLVHLLKQ---PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRL-T-EGRVNVLV-ATD 88 (170)
Confidence 3466666666543 23468999999999999999999998877443 44456777 3 33455554 448
Q ss_pred ccccccchhc-------hhhhhhhccccceeeccccCccccccC---CCCccccchhhheeccCc
Q 039490 291 SLSSALTSAM-------DSAERLVGDLEAYINSDNLRRNHQEFS---HADTDSVSLISADVQAGS 345 (423)
Q Consensus 291 aggvGLN~~l-------~~A~~~~~~~qa~~r~hriGq~~~~~~---~~~~~~~~~~~~~~~~~~ 345 (423)
+++.|||.+- +..+....-.|.+.|++|.|+.-..-+ ..|..-|..|...++.+.
T Consensus 89 ~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (170)
T 2yjt_D 89 VAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPI 153 (170)
Confidence 8899998432 111111222599999999985433222 344555555655554443
No 90
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=94.82 E-value=0.027 Score=57.83 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=40.4
Q ss_pred CchhhHHHHHHHHhc-CCCCCCceEEcccchhHHHHHHHhhhhC------------CC---------CcccccchhcccC
Q 039490 219 LARRIESVRQQLVNR-RPVSTPIEVRIQQFNSIVDAARHQTGSL------------DL---------DAAVRSGELEVND 276 (423)
Q Consensus 219 ~stKieaLr~~L~~~-~~~p~~K~iVFSQftsfLdlle~~L~~~------------gi---------~~~~~d~~l~~f~ 276 (423)
...|++.|.+.|... ...++.|.|||.++....+.|...|... |. ...++...++.|
T Consensus 370 ~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F- 448 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF- 448 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------------------
T ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHh-
Confidence 367888888888644 2235679999999999999999999876 22 233466778999
Q ss_pred CCCCcceEEEecccccccccchh
Q 039490 277 PLLHISRVLPASISSLSSALTSA 299 (423)
Q Consensus 277 ~~dp~~~VLL~SLkaggvGLN~~ 299 (423)
+.+....|| ++-.+++.|||.+
T Consensus 449 ~~~g~~~vL-vaT~~~~~GiDip 470 (556)
T 4a2p_A 449 KTSKDNRLL-IATSVADEGIDIV 470 (556)
T ss_dssp -----CCEE-EEEC---------
T ss_pred cccCceEEE-EEcCchhcCCCch
Confidence 554667776 5559999999953
No 91
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=94.64 E-value=0.0088 Score=60.82 Aligned_cols=97 Identities=11% Similarity=0.002 Sum_probs=67.5
Q ss_pred chhhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhCCCC----cccccchhcccCCCCCcceEEEecccccccc
Q 039490 220 ARRIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSLDLD----AAVRSGELEVNDPLLHISRVLPASISSLSSA 295 (423)
Q Consensus 220 stKieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~gi~----~~~~d~~l~~f~~~dp~~~VLL~SLkaggvG 295 (423)
..|++.+.+.+.. ..+.|.+||.++...++.+...|....+. ...+...++.| + +....|| ++-.+++.|
T Consensus 334 ~~k~~~l~~~l~~---~~~~k~lvF~~~~~~~~~l~~~l~~~~~~g~~~~~~R~~~~~~F-~-~g~~~vL-v~T~~~~~G 407 (472)
T 2fwr_A 334 KNKIRKLREILER---HRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGF-R-TGRFRAI-VSSQVLDEG 407 (472)
T ss_dssp SHHHHHHHHHHHH---TSSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSHHHHTHHHHH-H-HSSCSBC-BCSSCCCSS
T ss_pred hHHHHHHHHHHHh---CCCCcEEEEECCHHHHHHHHHHhCcceeeCCCCHHHHHHHHHHH-h-CCCCCEE-EEcCchhcC
Confidence 4567777777765 34679999999999999999988643333 23456678899 3 3556676 555999999
Q ss_pred cchhc-------hhhhhhhccccceeeccccCcc
Q 039490 296 LTSAM-------DSAERLVGDLEAYINSDNLRRN 322 (423)
Q Consensus 296 LN~~l-------~~A~~~~~~~qa~~r~hriGq~ 322 (423)
||.+- ++.+.+....|++.|++|+|+.
T Consensus 408 ldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~ 441 (472)
T 2fwr_A 408 IDVPDANVGVIMSGSGSAREYIQRLGRILRPSKG 441 (472)
T ss_dssp SCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTT
T ss_pred cccccCcEEEEECCCCCHHHHHHHHhhccCCCCC
Confidence 99432 2112222225999999999954
No 92
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=93.80 E-value=0.084 Score=59.05 Aligned_cols=79 Identities=11% Similarity=0.056 Sum_probs=44.5
Q ss_pred CchhhHHHHHHHHhc-CCCCCCceEEcccchhHHHHHHHhhhhC------------CCC---------cccccchhcccC
Q 039490 219 LARRIESVRQQLVNR-RPVSTPIEVRIQQFNSIVDAARHQTGSL------------DLD---------AAVRSGELEVND 276 (423)
Q Consensus 219 ~stKieaLr~~L~~~-~~~p~~K~iVFSQftsfLdlle~~L~~~------------gi~---------~~~~d~~l~~f~ 276 (423)
...|++.|.++|... ...++.|.|||.++..+++.|...|... |.+ ..+|...++.|
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~F- 689 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF- 689 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHh-
Confidence 477899999888764 3456789999999999999999999986 222 22455677889
Q ss_pred CCCCcceEEEecccccccccchh
Q 039490 277 PLLHISRVLPASISSLSSALTSA 299 (423)
Q Consensus 277 ~~dp~~~VLL~SLkaggvGLN~~ 299 (423)
+.+....| |++.++++.|||.+
T Consensus 690 r~~g~~~V-LVaT~~~~eGIDlp 711 (936)
T 4a2w_A 690 KTSKDNRL-LIATSVADEGIDIV 711 (936)
T ss_dssp ----CCSE-EEEECC------CC
T ss_pred hccCCeeE-EEEeCchhcCCcch
Confidence 54455665 47889999999953
No 93
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=93.75 E-value=0.065 Score=58.61 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=42.2
Q ss_pred CchhhHHHHHHHHhc-CCCCCCceEEcccchhHHHHHHHhhhhC------------CCC---------cccccchhcccC
Q 039490 219 LARRIESVRQQLVNR-RPVSTPIEVRIQQFNSIVDAARHQTGSL------------DLD---------AAVRSGELEVND 276 (423)
Q Consensus 219 ~stKieaLr~~L~~~-~~~p~~K~iVFSQftsfLdlle~~L~~~------------gi~---------~~~~d~~l~~f~ 276 (423)
...|++.|.+.|... ...++.|.|||.++..+++.|...|... |.+ ...+...++.|
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F- 689 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF- 689 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------------------
T ss_pred CChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHh-
Confidence 467889888888753 2235679999999999999999999874 222 22456678899
Q ss_pred CCCCcceEEEecccccccccchh
Q 039490 277 PLLHISRVLPASISSLSSALTSA 299 (423)
Q Consensus 277 ~~dp~~~VLL~SLkaggvGLN~~ 299 (423)
+.+....|| ++-++++.|||.+
T Consensus 690 ~~~g~~~vL-VaT~~~~~GIDlp 711 (797)
T 4a2q_A 690 KTSKDNRLL-IATSVADEGIDIV 711 (797)
T ss_dssp ----CCSEE-EEECC-------C
T ss_pred hccCCceEE-EEcCchhcCCCch
Confidence 554666665 5669999999953
No 94
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.11 E-value=0.054 Score=43.71 Aligned_cols=48 Identities=21% Similarity=0.536 Sum_probs=36.8
Q ss_pred CccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCC
Q 039490 137 EFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDA 188 (423)
Q Consensus 137 e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~ 188 (423)
.-+.|..|.-..+ ..+....|.+|..|+... ...+..||+|+.++..+
T Consensus 27 G~~nCKsCWf~~k-~LV~C~dHYLCl~CLtlm---L~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENK-GLVECNNHYLCLNCLTLL---LSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCS-SEEECSSCEEEHHHHHHT---CSSSSEETTTTEECCCC
T ss_pred CcccChhhccccC-CeeeecchhhHHHHHHHH---HhhccCCcccCCcCCcc
Confidence 4568999975554 344555799999999987 56788999999988754
No 95
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=91.69 E-value=0.095 Score=52.50 Aligned_cols=56 Identities=18% Similarity=0.360 Sum_probs=42.2
Q ss_pred CCccccccccccccCcEE-ccCCCccchhhHhhhhh--hcCCCCCCCCCCcccCCCCcee
Q 039490 136 GEFFDCNICLDMARDPVL-TCCGHLFCWSCFYQLPY--AYRNVKECPACNGEVTDASIIP 192 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~-~~CGH~FC~~Ci~~~~~--~~~~~~~CP~Cr~~i~~~~l~~ 192 (423)
.-.+.|||-...+..|+. ..|.|.-|.+-. .|+. .....+.||+|.+.+...+|..
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~-sfL~~~~~~~~W~CPIC~k~~~~~dL~I 305 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDAL-WFLHSQLQIPTWQCPVCQIDIALENLAI 305 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHH-HHHHHHHHSCCCBCTTTCCBCCGGGEEE
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHH-HHHHHhhcCCceeCCCCCcccCHHHeeE
Confidence 456799999999999986 689999776542 2222 2467789999999988777653
No 96
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=91.59 E-value=0.23 Score=45.24 Aligned_cols=93 Identities=14% Similarity=0.034 Sum_probs=65.2
Q ss_pred CchhhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhCCCCccc---------ccchhcccCCCCCcceEEEecc
Q 039490 219 LARRIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSLDLDAAV---------RSGELEVNDPLLHISRVLPASI 289 (423)
Q Consensus 219 ~stKieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~gi~~~~---------~d~~l~~f~~~dp~~~VLL~SL 289 (423)
...|++.|.+++.... ..+.+||-......+.+...|...|+.... +...++.| ......||+.+
T Consensus 15 ~~~k~~~l~~ll~~~~---~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f--~~g~~~vlvaT- 88 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVAS---PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAF--RQGEVRVLVAT- 88 (212)
T ss_dssp TTSHHHHHHHHHHHHC---CSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHH--HSSSCCEEEEC-
T ss_pred HHHHHHHHHHHHHhCC---CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHH--HCCCCeEEEec-
Confidence 3578899988887443 358999999999999999999998888443 34456788 33456676554
Q ss_pred cccccccchh-----------chhhhhhhccccceeeccccCc
Q 039490 290 SSLSSALTSA-----------MDSAERLVGDLEAYINSDNLRR 321 (423)
Q Consensus 290 kaggvGLN~~-----------l~~A~~~~~~~qa~~r~hriGq 321 (423)
.+.+.|||.+ .+.+.. .|.+-|+.|.|+
T Consensus 89 ~~~~~Gidi~~v~~Vi~~~~p~~~~~~----~qr~GR~gR~g~ 127 (212)
T 3eaq_A 89 DVAARGLDIPQVDLVVHYRLPDRAEAY----QHRSGRTGRAGR 127 (212)
T ss_dssp TTTTCSSSCCCBSEEEESSCCSSHHHH----HHHHTTBCCCC-
T ss_pred ChhhcCCCCccCcEEEECCCCcCHHHH----HHHhcccCCCCC
Confidence 7778888832 133333 377777777774
No 97
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=91.46 E-value=0.12 Score=51.53 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=42.2
Q ss_pred CCCccccccccccccCcEE-ccCCCccchhhHhhhhh--hcCCCCCCCCCCcccCCCCcee
Q 039490 135 GGEFFDCNICLDMARDPVL-TCCGHLFCWSCFYQLPY--AYRNVKECPACNGEVTDASIIP 192 (423)
Q Consensus 135 ~~e~~~C~ICle~~~~pv~-~~CGH~FC~~Ci~~~~~--~~~~~~~CP~Cr~~i~~~~l~~ 192 (423)
..-.+.|||-...+..|+. ..|.|.-|.+-. .|+. .....+.||+|.+.+...+|.-
T Consensus 212 ~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~-sfL~~~~~~~~W~CPiC~k~~~~~dL~I 271 (360)
T 4fo9_A 212 LRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAA-LYLQMNEKKPTWICPVCDKKAAYESLIL 271 (360)
T ss_dssp EEEESBCTTTCSBCSSEEEETTCCCCCCEEHH-HHHHHHHHSCCCBCTTTCSBCCGGGEEE
T ss_pred eEEeeeCCCccceeccCCcCCCCCCCccCCHH-HHHHHHhhCCCeECCCCCcccCHHHeEE
Confidence 3456789999999999986 689999665532 2322 2356789999999998777653
No 98
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=91.11 E-value=0.14 Score=40.11 Aligned_cols=46 Identities=24% Similarity=0.444 Sum_probs=33.8
Q ss_pred CCccccccccccccCcEEcc----CCCccchhhHhhhhhhc--CCCCCCCCC
Q 039490 136 GEFFDCNICLDMARDPVLTC----CGHLFCWSCFYQLPYAY--RNVKECPAC 181 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~~~----CGH~FC~~Ci~~~~~~~--~~~~~CP~C 181 (423)
...+.|.+|.+.+++..... =+|.||..|-..+++.+ .....||.=
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 45679999999999975443 47999999999887633 233456653
No 99
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=91.06 E-value=0.42 Score=46.36 Aligned_cols=93 Identities=11% Similarity=-0.013 Sum_probs=65.8
Q ss_pred chhhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhCCCCccc---------ccchhcccCCCCCcceEEEeccc
Q 039490 220 ARRIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSLDLDAAV---------RSGELEVNDPLLHISRVLPASIS 290 (423)
Q Consensus 220 stKieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~gi~~~~---------~d~~l~~f~~~dp~~~VLL~SLk 290 (423)
..|.+.+...+... ...|.+||.........+...|...|+.... +...++.| + +....|| ++-.
T Consensus 235 ~~~~~~l~~~l~~~---~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f-~-~~~~~vl-v~T~ 308 (391)
T 1xti_A 235 NEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQF-K-DFQRRIL-VATN 308 (391)
T ss_dssp GGHHHHHHHHHHHS---CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH-H-TTCCSEE-EESC
T ss_pred hhHHHHHHHHHHhc---CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHH-h-cCCCcEE-EECC
Confidence 45666676666543 4468999999999999999999999887443 34456788 3 3345555 4558
Q ss_pred ccccccchhc-----------hhhhhhhccccceeeccccCcc
Q 039490 291 SLSSALTSAM-----------DSAERLVGDLEAYINSDNLRRN 322 (423)
Q Consensus 291 aggvGLN~~l-----------~~A~~~~~~~qa~~r~hriGq~ 322 (423)
+.+.|+|.+- +.+.. .|.+.|++|.|+.
T Consensus 309 ~~~~Gidi~~~~~Vi~~~~p~s~~~~----~Qr~GR~~R~g~~ 347 (391)
T 1xti_A 309 LFGRGMDIERVNIAFNYDMPEDSDTY----LHRVARAGRFGTK 347 (391)
T ss_dssp CCSSCBCCTTEEEEEESSCCSSHHHH----HHHHCBCSSSCCC
T ss_pred hhhcCCCcccCCEEEEeCCCCCHHHH----HHhcccccCCCCc
Confidence 8899999541 22222 4999999999953
No 100
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=88.74 E-value=0.35 Score=46.28 Aligned_cols=92 Identities=10% Similarity=0.074 Sum_probs=64.8
Q ss_pred chhhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhCCCCccc---------ccchhcccCCCCCcceEEEeccc
Q 039490 220 ARRIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSLDLDAAV---------RSGELEVNDPLLHISRVLPASIS 290 (423)
Q Consensus 220 stKieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~gi~~~~---------~d~~l~~f~~~dp~~~VLL~SLk 290 (423)
..|++.+.+.+. ....+.+||.........+...|...|+.... +...++.| + +....||+. -.
T Consensus 224 ~~~~~~l~~~l~----~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f-~-~~~~~vlv~-T~ 296 (367)
T 1hv8_A 224 NERFEALCRLLK----NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLF-K-QKKIRILIA-TD 296 (367)
T ss_dssp GGHHHHHHHHHC----STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHH-H-TTSSSEEEE-CT
T ss_pred HHHHHHHHHHHh----cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHH-H-cCCCeEEEE-CC
Confidence 456777776664 34568999999999999999999999888443 33456778 3 334556654 47
Q ss_pred ccccccchh-----------chhhhhhhccccceeeccccCcc
Q 039490 291 SLSSALTSA-----------MDSAERLVGDLEAYINSDNLRRN 322 (423)
Q Consensus 291 aggvGLN~~-----------l~~A~~~~~~~qa~~r~hriGq~ 322 (423)
+.+.|+|.+ .+.+.. .|.+.|++|.|+.
T Consensus 297 ~~~~Gid~~~~~~Vi~~~~~~s~~~~----~Q~~GR~~R~g~~ 335 (367)
T 1hv8_A 297 VMSRGIDVNDLNCVINYHLPQNPESY----MHRIGRTGRAGKK 335 (367)
T ss_dssp THHHHCCCSCCSEEEESSCCSCHHHH----HHHSTTTCCSSSC
T ss_pred hhhcCCCcccCCEEEEecCCCCHHHh----hhcccccccCCCc
Confidence 888898842 123222 4999999999953
No 101
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=87.60 E-value=0.87 Score=44.38 Aligned_cols=114 Identities=9% Similarity=0.038 Sum_probs=73.0
Q ss_pred chhhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhCCCCccc---------ccchhcccCCCCCcceEEEeccc
Q 039490 220 ARRIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSLDLDAAV---------RSGELEVNDPLLHISRVLPASIS 290 (423)
Q Consensus 220 stKieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~gi~~~~---------~d~~l~~f~~~dp~~~VLL~SLk 290 (423)
..|...+...+... ...|.+||.......+.+...|...|+.... +...++.| + +....||+ +-.
T Consensus 243 ~~k~~~l~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f-~-~g~~~vLv-~T~ 316 (400)
T 1s2m_A 243 RQKLHCLNTLFSKL---QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEF-R-QGKVRTLV-CSD 316 (400)
T ss_dssp GGHHHHHHHHHHHS---CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHH-H-TTSSSEEE-ESS
T ss_pred hhHHHHHHHHHhhc---CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHH-h-cCCCcEEE-EcC
Confidence 45666666666543 3458999999999999999999998887443 34456788 3 34455664 447
Q ss_pred ccccccchhc-----------hhhhhhhccccceeeccccCccccccC---CCCccccchhhheecc
Q 039490 291 SLSSALTSAM-----------DSAERLVGDLEAYINSDNLRRNHQEFS---HADTDSVSLISADVQA 343 (423)
Q Consensus 291 aggvGLN~~l-----------~~A~~~~~~~qa~~r~hriGq~~~~~~---~~~~~~~~~~~~~~~~ 343 (423)
+.+.|||.+- +.+.. .|.+.|++|.|+.-.--. ..|..-+..|...++.
T Consensus 317 ~~~~Gidip~~~~Vi~~~~p~s~~~~----~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~ 379 (400)
T 1s2m_A 317 LLTRGIDIQAVNVVINFDFPKTAETY----LHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGT 379 (400)
T ss_dssp CSSSSCCCTTEEEEEESSCCSSHHHH----HHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred ccccCCCccCCCEEEEeCCCCCHHHH----HHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCC
Confidence 8889999421 22222 499999999995432222 3344444444443333
No 102
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=87.52 E-value=0.51 Score=50.11 Aligned_cols=79 Identities=13% Similarity=0.073 Sum_probs=48.7
Q ss_pred CchhhHHHHHHHHhc-CCCCCCceEEcccchhHHHHHHHhhhhCC----CCcc-----------------cccchhcccC
Q 039490 219 LARRIESVRQQLVNR-RPVSTPIEVRIQQFNSIVDAARHQTGSLD----LDAA-----------------VRSGELEVND 276 (423)
Q Consensus 219 ~stKieaLr~~L~~~-~~~p~~K~iVFSQftsfLdlle~~L~~~g----i~~~-----------------~~d~~l~~f~ 276 (423)
...|++.|.+++... ...++.+.|||.++....+.|...|...| +... ++...++.|
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F- 456 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF- 456 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHH-
Confidence 356888888887654 33456799999999999999999999887 4422 244566788
Q ss_pred CCCCcceEEEecccccccccchh
Q 039490 277 PLLHISRVLPASISSLSSALTSA 299 (423)
Q Consensus 277 ~~dp~~~VLL~SLkaggvGLN~~ 299 (423)
+.+....| |++-.+++.|||.+
T Consensus 457 ~~~g~~~v-LVaT~v~~~GiDip 478 (696)
T 2ykg_A 457 KASGDHNI-LIATSVADEGIDIA 478 (696)
T ss_dssp ----CCSC-SEEEESSCCC---C
T ss_pred HhcCCccE-EEEechhhcCCcCc
Confidence 44355666 46779999999953
No 103
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=85.33 E-value=0.32 Score=49.72 Aligned_cols=99 Identities=9% Similarity=-0.083 Sum_probs=64.4
Q ss_pred hhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhCCCCccc---------ccchhcccCCCCCcceEEEeccccc
Q 039490 222 RIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSLDLDAAV---------RSGELEVNDPLLHISRVLPASISSL 292 (423)
Q Consensus 222 KieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~gi~~~~---------~d~~l~~f~~~dp~~~VLL~SLkag 292 (423)
|.+.+.+.+.......+.+.++|.. +.....+...|...+..... +...++.| + +....||+++..++
T Consensus 332 ~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f-~-~g~~~vLv~T~~~~ 408 (510)
T 2oca_A 332 RNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLA-E-NGKGIIIVASYGVF 408 (510)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHH-H-HCCSCEEEEEHHHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHH-h-CCCCCEEEEEcChh
Confidence 3344444444332334557899988 77788899999998665333 34456788 3 45567888888999
Q ss_pred ccccchhc-------hhhhhhhccccceeeccccCccc
Q 039490 293 SSALTSAM-------DSAERLVGDLEAYINSDNLRRNH 323 (423)
Q Consensus 293 gvGLN~~l-------~~A~~~~~~~qa~~r~hriGq~~ 323 (423)
+.|||.+- ++-+.+..-.|.+.|++|.|+..
T Consensus 409 ~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~ 446 (510)
T 2oca_A 409 STGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSK 446 (510)
T ss_dssp HHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCC
T ss_pred hcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCC
Confidence 99999432 11111112259999999999643
No 104
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=82.88 E-value=1.4 Score=43.01 Aligned_cols=92 Identities=12% Similarity=0.043 Sum_probs=63.9
Q ss_pred hhhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhCCCCcccc---------cchhcccCCCCCcceEEEecccc
Q 039490 221 RRIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSLDLDAAVR---------SGELEVNDPLLHISRVLPASISS 291 (423)
Q Consensus 221 tKieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~gi~~~~~---------d~~l~~f~~~dp~~~VLL~SLka 291 (423)
.|.+.+...+.... ..|.+||.......+.+...|...|+..... ...++.| + +....|| ++-.+
T Consensus 262 ~k~~~l~~~~~~~~---~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f-~-~g~~~vl-v~T~~ 335 (410)
T 2j0s_A 262 WKFDTLCDLYDTLT---ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEF-R-SGASRVL-ISTDV 335 (410)
T ss_dssp HHHHHHHHHHHHHT---SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHH-H-HTSSCEE-EECGG
T ss_pred hHHHHHHHHHHhcC---CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHH-H-CCCCCEE-EECCh
Confidence 36777777665443 2489999999999999999999998885443 3456778 3 3345555 46678
Q ss_pred cccccchhc-----------hhhhhhhccccceeeccccCcc
Q 039490 292 LSSALTSAM-----------DSAERLVGDLEAYINSDNLRRN 322 (423)
Q Consensus 292 ggvGLN~~l-----------~~A~~~~~~~qa~~r~hriGq~ 322 (423)
.+.|||.+- +.+.. .|.+.|++|.|+.
T Consensus 336 ~~~Gidi~~v~~Vi~~~~p~s~~~~----~Qr~GR~gR~g~~ 373 (410)
T 2j0s_A 336 WARGLDVPQVSLIINYDLPNNRELY----IHRIGRSGRYGRK 373 (410)
T ss_dssp GSSSCCCTTEEEEEESSCCSSHHHH----HHHHTTSSGGGCC
T ss_pred hhCcCCcccCCEEEEECCCCCHHHH----HHhcccccCCCCc
Confidence 889998421 22222 4888888888843
No 105
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=82.53 E-value=1.2 Score=35.16 Aligned_cols=45 Identities=18% Similarity=0.358 Sum_probs=29.8
Q ss_pred CccccccccccccCcEEc---cCCCccchhhHhhhh--h-----------hcCCCCCCCCCC
Q 039490 137 EFFDCNICLDMARDPVLT---CCGHLFCWSCFYQLP--Y-----------AYRNVKECPACN 182 (423)
Q Consensus 137 e~~~C~ICle~~~~pv~~---~CGH~FC~~Ci~~~~--~-----------~~~~~~~CP~Cr 182 (423)
.+..|.||.. +....++ .|+-+|+..|+.+.- . .......||.|.
T Consensus 14 ~D~~C~VC~~-~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 14 NDEMCDVCEV-WTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CSCCCTTTCC-CCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred CCcccCcccc-ccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 4458999954 4444444 489999999998841 0 012346799994
No 106
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=82.41 E-value=1.6 Score=42.20 Aligned_cols=92 Identities=13% Similarity=0.028 Sum_probs=61.1
Q ss_pred chhhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhCCCCccc---------ccchhcccCCCCCcceEEEeccc
Q 039490 220 ARRIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSLDLDAAV---------RSGELEVNDPLLHISRVLPASIS 290 (423)
Q Consensus 220 stKieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~gi~~~~---------~d~~l~~f~~~dp~~~VLL~SLk 290 (423)
..|++.|.+++.... ..+.|||-......+.+...|...|+.... +...++.| + .....||++. .
T Consensus 13 ~~K~~~L~~ll~~~~---~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f-~-~g~~~vLVaT-~ 86 (300)
T 3i32_A 13 RGRLEVLSDLLYVAS---PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAF-R-QGEVRVLVAT-D 86 (300)
T ss_dssp SSHHHHHHHHHHHHC---CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHH-H-HTSCCEEEEC-S
T ss_pred HHHHHHHHHHHHhcC---CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHh-h-cCCceEEEEe-c
Confidence 568899988887543 458999999999999999999998888443 34456778 2 3345666554 6
Q ss_pred ccccccchh-----------chhhhhhhccccceeeccccCc
Q 039490 291 SLSSALTSA-----------MDSAERLVGDLEAYINSDNLRR 321 (423)
Q Consensus 291 aggvGLN~~-----------l~~A~~~~~~~qa~~r~hriGq 321 (423)
+.+-|||.+ -+.+.. .|.+-|+.|.|+
T Consensus 87 va~~Gidi~~v~~VI~~d~p~s~~~y----~Qr~GRagR~g~ 124 (300)
T 3i32_A 87 VAARGLDIPQVDLVVHYRMPDRAEAY----QHRSGRTGRAGR 124 (300)
T ss_dssp TTTCSTTCCCCSEEEESSCCSSTTHH----HHHHTCCC----
T ss_pred hhhcCccccceeEEEEcCCCCCHHHH----HHHccCcCcCCC
Confidence 667788732 133333 366777777764
No 107
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=81.72 E-value=0.85 Score=36.90 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=31.4
Q ss_pred CCccccccccccccCcEEc---cCCCccchhhHhhhhhhcCCCCCCCCCCc
Q 039490 136 GEFFDCNICLDMARDPVLT---CCGHLFCWSCFYQLPYAYRNVKECPACNG 183 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~~---~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~ 183 (423)
.+...| ||........++ .|.-.|+..|+..-.........||.|+.
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 345678 898766554443 58888999998653332344678999963
No 108
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=80.90 E-value=0.84 Score=47.66 Aligned_cols=82 Identities=15% Similarity=0.093 Sum_probs=59.3
Q ss_pred CCCCceEEcccchhHHHHHHHhhhhCCCCc---------------cc-ccchhcccCCCCCcceEEEecccccccccchh
Q 039490 236 VSTPIEVRIQQFNSIVDAARHQTGSLDLDA---------------AV-RSGELEVNDPLLHISRVLPASISSLSSALTSA 299 (423)
Q Consensus 236 ~p~~K~iVFSQftsfLdlle~~L~~~gi~~---------------~~-~d~~l~~f~~~dp~~~VLL~SLkaggvGLN~~ 299 (423)
.+..|.+||.......+.+...|...+... .. +...++.|+..+....++|++-.+.+.|+|.+
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip 516 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQLLTTGVDAP 516 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCT
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECChhhcCccch
Confidence 456799999999999999999998754321 11 45677889322234678889999999999943
Q ss_pred c-----------hhhhhhhccccceeeccccCc
Q 039490 300 M-----------DSAERLVGDLEAYINSDNLRR 321 (423)
Q Consensus 300 l-----------~~A~~~~~~~qa~~r~hriGq 321 (423)
- +.+.. .|.+.|++|+|.
T Consensus 517 ~v~~Vi~~~~~~s~~~~----~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 517 TCKNVVLARVVNSMSEF----KQIVGRGTRLRE 545 (590)
T ss_dssp TEEEEEEESCCCCHHHH----HHHHTTSCCCBG
T ss_pred heeEEEEEecCCChHHH----HHHHhhhcccCc
Confidence 1 22222 499999999995
No 109
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=79.99 E-value=1.8 Score=42.07 Aligned_cols=116 Identities=10% Similarity=0.067 Sum_probs=66.6
Q ss_pred hhhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhCCCCccc---------ccchhcccCCCCCcceEEEecccc
Q 039490 221 RRIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSLDLDAAV---------RSGELEVNDPLLHISRVLPASISS 291 (423)
Q Consensus 221 tKieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~gi~~~~---------~d~~l~~f~~~dp~~~VLL~SLka 291 (423)
.|++.+...+... ...|.+||-......+.+...|...++.... +...++.| + +....| |++-.+
T Consensus 266 ~~~~~l~~~~~~~---~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f-~-~g~~~v-lv~T~~ 339 (414)
T 3eiq_A 266 WKLDTLCDLYETL---TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREF-R-SGSSRV-LITTDL 339 (414)
T ss_dssp THHHHHHHHHHSS---CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHH-S-CC---C-EEECSS
T ss_pred hHHHHHHHHHHhC---CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHH-H-cCCCcE-EEECCc
Confidence 3667776666533 3458999999999999999999999888544 34456788 3 333444 566678
Q ss_pred cccccchhc-----------hhhhhhhccccceeeccccCccccccC---CCCccccchhhheeccCcc
Q 039490 292 LSSALTSAM-----------DSAERLVGDLEAYINSDNLRRNHQEFS---HADTDSVSLISADVQAGSQ 346 (423)
Q Consensus 292 ggvGLN~~l-----------~~A~~~~~~~qa~~r~hriGq~~~~~~---~~~~~~~~~~~~~~~~~~~ 346 (423)
.+.|||.+- +.+.. .|.+-|++|.|+.-.--. ..|...+..|...++.+..
T Consensus 340 ~~~Gidip~v~~Vi~~~~p~s~~~~----~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (414)
T 3eiq_A 340 LARGIDVQQVSLVINYDLPTNRENY----IHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIE 404 (414)
T ss_dssp CC--CCGGGCSCEEESSCCSSTHHH----HHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCE
T ss_pred cccCCCccCCCEEEEeCCCCCHHHh----hhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCcc
Confidence 889999421 23222 488888888884322211 3334455555555544443
No 110
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=76.60 E-value=3 Score=41.72 Aligned_cols=91 Identities=10% Similarity=-0.005 Sum_probs=62.6
Q ss_pred chhhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhCCCCccc---------ccchhcccCCCCCcceEEEeccc
Q 039490 220 ARRIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSLDLDAAV---------RSGELEVNDPLLHISRVLPASIS 290 (423)
Q Consensus 220 stKieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~gi~~~~---------~d~~l~~f~~~dp~~~VLL~SLk 290 (423)
..|...|.+.+..... +.+||-......+.+...|...|+.... |...++.| + .....|| ++-.
T Consensus 286 ~~k~~~l~~~l~~~~~----~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F-~-~g~~~vL-vaT~ 358 (434)
T 2db3_A 286 YAKRSKLIEILSEQAD----GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDF-K-NGSMKVL-IATS 358 (434)
T ss_dssp GGHHHHHHHHHHHCCT----TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHH-H-TSSCSEE-EECG
T ss_pred HHHHHHHHHHHHhCCC----CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHH-H-cCCCcEE-EEch
Confidence 4577778777765442 5999999999999999999999888443 45567888 3 3345565 4456
Q ss_pred ccccccchh-----------chhhhhhhccccceeeccccCc
Q 039490 291 SLSSALTSA-----------MDSAERLVGDLEAYINSDNLRR 321 (423)
Q Consensus 291 aggvGLN~~-----------l~~A~~~~~~~qa~~r~hriGq 321 (423)
+.+.|||.+ .+.... .|.+-|+.|.|+
T Consensus 359 v~~rGlDi~~v~~VI~~d~p~~~~~y----~qriGR~gR~g~ 396 (434)
T 2db3_A 359 VASRGLDIKNIKHVINYDMPSKIDDY----VHRIGRTGRVGN 396 (434)
T ss_dssp GGTSSCCCTTCCEEEESSCCSSHHHH----HHHHTTSSCTTC
T ss_pred hhhCCCCcccCCEEEEECCCCCHHHH----HHHhcccccCCC
Confidence 777888832 122222 377777777774
No 111
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.09 E-value=5.2 Score=31.93 Aligned_cols=47 Identities=23% Similarity=0.502 Sum_probs=30.4
Q ss_pred CCccccccccccccCcEEc---c--CC-CccchhhHhhhhhhcCCCCCCCCCCccc
Q 039490 136 GEFFDCNICLDMARDPVLT---C--CG-HLFCWSCFYQLPYAYRNVKECPACNGEV 185 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~~---~--CG-H~FC~~Ci~~~~~~~~~~~~CP~Cr~~i 185 (423)
.+...| ||....... ++ . |. ..|+..|+.-- ........||.|+...
T Consensus 34 ~e~~yC-iC~~~~~g~-MI~CD~~dC~~~WfH~~CVgl~-~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCCSC-CCCCSCSSCSCCCCCSTTTTCS-SCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCCCC-EeEecCCCCCCCCEecccCCcC-cCCCCCEECcCccCcC
Confidence 455678 999865433 43 3 55 57999998732 2234568899997643
No 112
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=75.53 E-value=3.5 Score=30.82 Aligned_cols=48 Identities=27% Similarity=0.625 Sum_probs=32.4
Q ss_pred CccccccccccccCcEE-ccCCCccchhhHhhhhhh-cCCCCCCCCCCccc
Q 039490 137 EFFDCNICLDMARDPVL-TCCGHLFCWSCFYQLPYA-YRNVKECPACNGEV 185 (423)
Q Consensus 137 e~~~C~ICle~~~~pv~-~~CGH~FC~~Ci~~~~~~-~~~~~~CP~Cr~~i 185 (423)
....|.||.+.- +-+. -.|...|+..|+...+.. -.....||.|....
T Consensus 11 ~~~~C~vC~~~~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDGT-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCCT-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCCC-eEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 345799998642 2222 369999999999765432 24567899997543
No 113
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=74.50 E-value=0.89 Score=33.54 Aligned_cols=31 Identities=23% Similarity=0.657 Sum_probs=23.3
Q ss_pred cccccccccccCc-----EEc-c--CCCccchhhHhhhh
Q 039490 139 FDCNICLDMARDP-----VLT-C--CGHLFCWSCFYQLP 169 (423)
Q Consensus 139 ~~C~ICle~~~~p-----v~~-~--CGH~FC~~Ci~~~~ 169 (423)
-.||-|.-.++.. +.- . |+|.||+.|...|-
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcc
Confidence 4799998877653 222 3 99999999999884
No 114
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=74.41 E-value=4.7 Score=30.54 Aligned_cols=48 Identities=23% Similarity=0.509 Sum_probs=31.0
Q ss_pred CCccccccccccccCcEEc--c--CC-CccchhhHhhhhhhcCCCCCCCCCCccc
Q 039490 136 GEFFDCNICLDMARDPVLT--C--CG-HLFCWSCFYQLPYAYRNVKECPACNGEV 185 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~~--~--CG-H~FC~~Ci~~~~~~~~~~~~CP~Cr~~i 185 (423)
.+...| ||........+. . |. ..|+..|+.- .........||.|...-
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl-~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGL-TTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTC-SSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCc-CcCCCCCEECCCCCccc
Confidence 456678 899865443332 3 55 6899999873 22224678899997643
No 115
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=73.65 E-value=0.92 Score=44.34 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=35.0
Q ss_pred CCccccccccccccCcEEc----cCC--CccchhhHhhhhhhcCCCCCCCCCCcc
Q 039490 136 GEFFDCNICLDMARDPVLT----CCG--HLFCWSCFYQLPYAYRNVKECPACNGE 184 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~~----~CG--H~FC~~Ci~~~~~~~~~~~~CP~Cr~~ 184 (423)
...-.||+|.....-.++. .=| |.+|.-|-..| ......||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W---~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEW---HYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEE---ECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEE---eecCcCCcCCCCC
Confidence 4567999999987665543 234 57899999999 4567789999875
No 116
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=72.77 E-value=1.7 Score=32.98 Aligned_cols=51 Identities=16% Similarity=0.481 Sum_probs=34.2
Q ss_pred CCccccccccccccCc-EEc--cCCCccchhhHhhhhhh-cCCCCCCCCCCcccC
Q 039490 136 GEFFDCNICLDMARDP-VLT--CCGHLFCWSCFYQLPYA-YRNVKECPACNGEVT 186 (423)
Q Consensus 136 ~e~~~C~ICle~~~~p-v~~--~CGH~FC~~Ci~~~~~~-~~~~~~CP~Cr~~i~ 186 (423)
.+...|+||....... .+. .|...|+..|+..-... ......||.|...+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 4556799998875442 332 58889999998754221 124678999976554
No 117
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=71.79 E-value=3.2 Score=33.08 Aligned_cols=48 Identities=23% Similarity=0.482 Sum_probs=34.8
Q ss_pred ccccccccccccC-----cEE--ccCCCccchhhHhhhhhhcCCCCCCCCCCcccCC
Q 039490 138 FFDCNICLDMARD-----PVL--TCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTD 187 (423)
Q Consensus 138 ~~~C~ICle~~~~-----pv~--~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~ 187 (423)
.-.|.||.+..-- +.+ -.|+-..|+.|+.-- .......||.|+.....
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYE--rkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYE--RREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHH--HHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHH--HhccCccccccCCcccc
Confidence 3489999997532 222 258888999998643 24678899999988764
No 118
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=68.94 E-value=8.8 Score=36.64 Aligned_cols=91 Identities=8% Similarity=0.064 Sum_probs=60.8
Q ss_pred hhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhCCCCccc---------ccchhcccCCCCCcceEEEeccccc
Q 039490 222 RIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSLDLDAAV---------RSGELEVNDPLLHISRVLPASISSL 292 (423)
Q Consensus 222 KieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~gi~~~~---------~d~~l~~f~~~dp~~~VLL~SLkag 292 (423)
+...+...+. .....|.+||-......+.+...|+..|+.... +...++.| + +....| |++-.+.
T Consensus 230 ~~~~l~~~~~---~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f-~-~g~~~v-lv~T~~~ 303 (395)
T 3pey_A 230 KFDVLTELYG---LMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDF-R-EGRSKV-LITTNVL 303 (395)
T ss_dssp HHHHHHHHHT---TTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHH-H-TTSCCE-EEECGGG
T ss_pred HHHHHHHHHH---hccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHH-H-CCCCCE-EEECChh
Confidence 4444444433 234568999999999999999999999888443 34456788 3 334555 4566888
Q ss_pred ccccchhc-------h---------hhhhhhccccceeeccccCc
Q 039490 293 SSALTSAM-------D---------SAERLVGDLEAYINSDNLRR 321 (423)
Q Consensus 293 gvGLN~~l-------~---------~A~~~~~~~qa~~r~hriGq 321 (423)
+.|+|.+- + +.... .|.+-|++|.|+
T Consensus 304 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~---~Qr~GR~gR~g~ 345 (395)
T 3pey_A 304 ARGIDIPTVSMVVNYDLPTLANGQADPATY---IHRIGRTGRFGR 345 (395)
T ss_dssp SSSCCCTTEEEEEESSCCBCTTSSBCHHHH---HHHHTTSSCTTC
T ss_pred hcCCCcccCCEEEEcCCCCCCcCCCCHHHh---hHhccccccCCC
Confidence 89999531 1 11222 488888888884
No 119
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=68.89 E-value=3.8 Score=39.89 Aligned_cols=93 Identities=10% Similarity=0.004 Sum_probs=62.0
Q ss_pred chhhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhCCCCccc---------ccchhcccCCCCCcceEEEeccc
Q 039490 220 ARRIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSLDLDAAV---------RSGELEVNDPLLHISRVLPASIS 290 (423)
Q Consensus 220 stKieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~gi~~~~---------~d~~l~~f~~~dp~~~VLL~SLk 290 (423)
..|.+.+...+... ..+.|.+||-......+.+...|...|+.... +...++.| + +....|| ++-.
T Consensus 260 ~~~~~~l~~~l~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f-~-~g~~~vl-vaT~ 334 (417)
T 2i4i_A 260 SDKRSFLLDLLNAT--GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF-R-SGKSPIL-VATA 334 (417)
T ss_dssp GGHHHHHHHHHHTC--CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH-H-HTSSCEE-EECH
T ss_pred HhHHHHHHHHHHhc--CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHH-H-cCCCCEE-EECC
Confidence 45667777776643 24568999999999999999999999888543 34456778 3 3344555 4456
Q ss_pred ccccccchhc-----------hhhhhhhccccceeeccccCc
Q 039490 291 SLSSALTSAM-----------DSAERLVGDLEAYINSDNLRR 321 (423)
Q Consensus 291 aggvGLN~~l-----------~~A~~~~~~~qa~~r~hriGq 321 (423)
+.+.|||.+- +.... .|.+-|+.|.|+
T Consensus 335 ~~~~Gidip~v~~Vi~~~~p~s~~~~----~Qr~GR~gR~g~ 372 (417)
T 2i4i_A 335 VAARGLDISNVKHVINFDLPSDIEEY----VHRIGRTGRVGN 372 (417)
T ss_dssp HHHTTSCCCCEEEEEESSCCSSHHHH----HHHHTTBCC--C
T ss_pred hhhcCCCcccCCEEEEEcCCCCHHHH----HHhcCccccCCC
Confidence 7888888421 22222 488888888884
No 120
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=66.10 E-value=1.8 Score=45.92 Aligned_cols=76 Identities=5% Similarity=-0.002 Sum_probs=47.8
Q ss_pred hhhHHHHHHHHhc-CCCC-CCceEEcccchhHHHHHHHhhhhC------CCCcccc-----------------cchhccc
Q 039490 221 RRIESVRQQLVNR-RPVS-TPIEVRIQQFNSIVDAARHQTGSL------DLDAAVR-----------------SGELEVN 275 (423)
Q Consensus 221 tKieaLr~~L~~~-~~~p-~~K~iVFSQftsfLdlle~~L~~~------gi~~~~~-----------------d~~l~~f 275 (423)
.|++.|.+.|... ...+ +.+.|||.++....+.|...|... |+..... ...++.|
T Consensus 381 ~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F 460 (699)
T 4gl2_A 381 EKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKF 460 (699)
T ss_dssp -CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHH
Confidence 4455555555432 2223 579999999999999999999987 6664333 3456888
Q ss_pred CCCCCcceEEEecccccccccchh
Q 039490 276 DPLLHISRVLPASISSLSSALTSA 299 (423)
Q Consensus 276 ~~~dp~~~VLL~SLkaggvGLN~~ 299 (423)
+. ....| |++-.+++.|||.+
T Consensus 461 -~~-g~~~V-LVaT~~~~~GIDip 481 (699)
T 4gl2_A 461 -RT-GKINL-LIATTVAEEGLDIK 481 (699)
T ss_dssp -CC----CC-SEEECSCCTTSCCC
T ss_pred -hc-CCCcE-EEEccccccCCccc
Confidence 33 44455 46778999999943
No 121
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=65.21 E-value=2.8 Score=34.70 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=37.9
Q ss_pred CccccccccccccC---cEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCc
Q 039490 137 EFFDCNICLDMARD---PVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASI 190 (423)
Q Consensus 137 e~~~C~ICle~~~~---pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l 190 (423)
+-|.|..|...+.+ .....=|..||..|....+ .....|..|..+|....+
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f---~~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF---GNSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHH---CCCCSSSCSSCCSCCEES
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHc---CCCCccccCCCCcCchhe
Confidence 44789999998863 3456788999999998753 223479999999886443
No 122
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=63.92 E-value=2 Score=32.36 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=31.5
Q ss_pred CCCCccccccccccccCcEEc---cCCCccchhhHhhhhhhcCCCCCCCCCCc
Q 039490 134 GGGEFFDCNICLDMARDPVLT---CCGHLFCWSCFYQLPYAYRNVKECPACNG 183 (423)
Q Consensus 134 ~~~e~~~C~ICle~~~~pv~~---~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~ 183 (423)
...+...| ||........++ .|...|+..|+.--.........||.|+.
T Consensus 15 ~~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 15 YFQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 33466788 999876654343 57888888888653222235677888854
No 123
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=63.26 E-value=5.4 Score=32.78 Aligned_cols=47 Identities=15% Similarity=0.426 Sum_probs=37.3
Q ss_pred CccccccccccccC-cEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCC
Q 039490 137 EFFDCNICLDMARD-PVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDA 188 (423)
Q Consensus 137 e~~~C~ICle~~~~-pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~ 188 (423)
+-|.|..|...+.. +....=|..||..|.... ....|..|.++|...
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~-----~~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN-----HAVVCQGCHNAIDPE 76 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH-----SCCBCTTTCSBCCTT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcC-----cCccCcccCCcCCcC
Confidence 45889999988875 345678899999998774 356899999999864
No 124
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=62.78 E-value=5.8 Score=34.29 Aligned_cols=47 Identities=21% Similarity=0.371 Sum_probs=32.2
Q ss_pred CCccccccccccccCcEEccCCCccchhhHhhhhh--------hcCCCCCCCCCC
Q 039490 136 GEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPY--------AYRNVKECPACN 182 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~--------~~~~~~~CP~Cr 182 (423)
..+..|.+|.+-=.--.--.|-..||..|+..-+. .....+.||.|.
T Consensus 61 g~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 61 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp SCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 34568999987432111136889999999986542 135678999996
No 125
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=62.51 E-value=6 Score=29.06 Aligned_cols=39 Identities=26% Similarity=0.678 Sum_probs=29.0
Q ss_pred ccccccccccCcE---EccCCCccchhhHhhhhhhcCCCCCCCCC
Q 039490 140 DCNICLDMARDPV---LTCCGHLFCWSCFYQLPYAYRNVKECPAC 181 (423)
Q Consensus 140 ~C~ICle~~~~pv---~~~CGH~FC~~Ci~~~~~~~~~~~~CP~C 181 (423)
.|--|+..+.+.. -..|++.||.+|=.=. ...-..||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fi---He~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFV---HDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTT---TTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHH---HhhccCCcCC
Confidence 5999998886543 2479999999995432 3456689988
No 126
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=61.81 E-value=2.7 Score=31.01 Aligned_cols=50 Identities=18% Similarity=0.295 Sum_probs=34.1
Q ss_pred CCcccccccccccc---CcEEc--cCCCccchhhHhhhhhh----cCCCCCCCCCCccc
Q 039490 136 GEFFDCNICLDMAR---DPVLT--CCGHLFCWSCFYQLPYA----YRNVKECPACNGEV 185 (423)
Q Consensus 136 ~e~~~C~ICle~~~---~pv~~--~CGH~FC~~Ci~~~~~~----~~~~~~CP~Cr~~i 185 (423)
.+...|.||..... ..+++ .|...|+..|+..-+.. ......||.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 45568999997642 23333 68889999998864321 35678899996543
No 127
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=61.26 E-value=0.83 Score=37.03 Aligned_cols=40 Identities=25% Similarity=0.556 Sum_probs=29.1
Q ss_pred cccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccC
Q 039490 139 FDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVT 186 (423)
Q Consensus 139 ~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~ 186 (423)
..||+|...+.. .=|+.+|..|-..+ .....||-|..++.
T Consensus 33 ~~CP~Cq~eL~~----~g~~~hC~~C~~~f----~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ----DNGHARCRSCGEFI----EMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE----ETTEEEETTTCCEE----EEEEECTTTCSBCE
T ss_pred ccCccCCCccee----cCCEEECccccchh----hccccCcchhhHHH
Confidence 689999987653 12455699997765 34567999998875
No 128
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=61.10 E-value=3.6 Score=36.04 Aligned_cols=44 Identities=23% Similarity=0.350 Sum_probs=31.0
Q ss_pred cccccccccccc---Cc-E-EccCCCccchhhHhhhhhhcCCCCCCCCCCc
Q 039490 138 FFDCNICLDMAR---DP-V-LTCCGHLFCWSCFYQLPYAYRNVKECPACNG 183 (423)
Q Consensus 138 ~~~C~ICle~~~---~p-v-~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~ 183 (423)
+..|.+|...|. +. . -..|.|.+|..|-. |.. ......|-+|.+
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~-~~~~W~C~vC~k 116 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHP-EEQGWLCDPCHL 116 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCS-SSSSCEEHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhccccc-ccC-CCCcEeeHHHHH
Confidence 458999999763 22 2 35799999999984 322 345677888865
No 129
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=59.62 E-value=6.3 Score=34.80 Aligned_cols=48 Identities=15% Similarity=0.398 Sum_probs=32.3
Q ss_pred CccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCC
Q 039490 137 EFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDAS 189 (423)
Q Consensus 137 e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~ 189 (423)
+-|.|..|...+.......=|..||..|.... ....|..|..+|....
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~-----f~~kC~~C~~~I~~~~ 133 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKR-----FGTKCAACQLGIPPTQ 133 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHT-----TSCCCTTTCCCCCSSC
T ss_pred ccCccCCCCCccCCCceeECCEeeecCccccc-----cccccccCCCccCCCc
Confidence 44677777776654433445777888887663 3568999998886543
No 130
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=59.06 E-value=5.7 Score=27.62 Aligned_cols=44 Identities=25% Similarity=0.643 Sum_probs=28.5
Q ss_pred ccccccccccCc-EE--ccCCCccchhhHhhhhh-hcCCCCCCCCCCc
Q 039490 140 DCNICLDMARDP-VL--TCCGHLFCWSCFYQLPY-AYRNVKECPACNG 183 (423)
Q Consensus 140 ~C~ICle~~~~p-v~--~~CGH~FC~~Ci~~~~~-~~~~~~~CP~Cr~ 183 (423)
.|.||...-... ++ -.|...|+..|+..-+. ...+...||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488888653322 22 26888999999965322 2245678999965
No 131
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=58.78 E-value=4.7 Score=37.70 Aligned_cols=79 Identities=13% Similarity=0.061 Sum_probs=54.0
Q ss_pred CCCCceEEcccchhHHHHHHHhhhhC-----CCCcccccchhcccCCCCCcceEEEecccccccccchhc----------
Q 039490 236 VSTPIEVRIQQFNSIVDAARHQTGSL-----DLDAAVRSGELEVNDPLLHISRVLPASISSLSSALTSAM---------- 300 (423)
Q Consensus 236 ~p~~K~iVFSQftsfLdlle~~L~~~-----gi~~~~~d~~l~~f~~~dp~~~VLL~SLkaggvGLN~~l---------- 300 (423)
..+.+.+||.........+...|... ++....+...++.| + +....|| ++-.+.+.|+|.+-
T Consensus 218 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~r~~~~~~f-~-~~~~~vl-v~T~~~~~Gid~~~~~~Vi~~~~~ 294 (337)
T 2z0m_A 218 NKDKGVIVFVRTRNRVAKLVRLFDNAIELRGDLPQSVRNRNIDAF-R-EGEYDML-ITTDVASRGLDIPLVEKVINFDAP 294 (337)
T ss_dssp CCCSSEEEECSCHHHHHHHHTTCTTEEEECTTSCHHHHHHHHHHH-H-TTSCSEE-EECHHHHTTCCCCCBSEEEESSCC
T ss_pred CCCCcEEEEEcCHHHHHHHHHHhhhhhhhcCCCCHHHHHHHHHHH-H-cCCCcEE-EEcCccccCCCccCCCEEEEecCC
Confidence 34568999999999999998888742 22233456677888 3 3345555 45678889999531
Q ss_pred -hhhhhhhccccceeeccccCc
Q 039490 301 -DSAERLVGDLEAYINSDNLRR 321 (423)
Q Consensus 301 -~~A~~~~~~~qa~~r~hriGq 321 (423)
+.+.. .|.+.|++|.|+
T Consensus 295 ~s~~~~----~Q~~GR~gR~g~ 312 (337)
T 2z0m_A 295 QDLRTY----IHRIGRTGRMGR 312 (337)
T ss_dssp SSHHHH----HHHHTTBCGGGC
T ss_pred CCHHHh----hHhcCccccCCC
Confidence 22222 499999999985
No 132
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=58.49 E-value=6 Score=38.82 Aligned_cols=73 Identities=12% Similarity=-0.018 Sum_probs=53.6
Q ss_pred hhhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhCCCCcc-cccch---hcccCCCCCcceEEEec---ccccc
Q 039490 221 RRIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSLDLDAA-VRSGE---LEVNDPLLHISRVLPAS---ISSLS 293 (423)
Q Consensus 221 tKieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~gi~~~-~~d~~---l~~f~~~dp~~~VLL~S---Lkagg 293 (423)
.+.+.+...+...+ .+.+||-.-....+.+...|...|+... ...+. ++.| ......||+.+ -.+.+
T Consensus 239 ~~~~~l~~~l~~~~----~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~r~~~~f--~~g~~~vLvat~s~T~~~~ 312 (414)
T 3oiy_A 239 RSKEKLVELLEIFR----DGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKNFEDF--KVGKINILIGVQAYYGKLT 312 (414)
T ss_dssp CCHHHHHHHHHHHC----SSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCHHHHHHHH--HTTSCSEEEEECCTTCCCC
T ss_pred CHHHHHHHHHHHcC----CCEEEEECCHHHHHHHHHHHHHcCCceehhhcCcchHHHHH--hCCCCeEEEEecCcCchhh
Confidence 35667777766533 5899999999999999999999998865 22111 8889 34567788774 57778
Q ss_pred cccchh
Q 039490 294 SALTSA 299 (423)
Q Consensus 294 vGLN~~ 299 (423)
.|||.+
T Consensus 313 ~GiDip 318 (414)
T 3oiy_A 313 RGVDLP 318 (414)
T ss_dssp CCCCCT
T ss_pred ccCccc
Confidence 888854
No 133
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=58.46 E-value=6.3 Score=28.78 Aligned_cols=47 Identities=19% Similarity=0.378 Sum_probs=30.8
Q ss_pred CCccccccccccccCcEE--ccCCCccchhhHhhhhh-hcCCCCCCCCCCcc
Q 039490 136 GEFFDCNICLDMARDPVL--TCCGHLFCWSCFYQLPY-AYRNVKECPACNGE 184 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~--~~CGH~FC~~Ci~~~~~-~~~~~~~CP~Cr~~ 184 (423)
.....|.||.+.- .++ -.|...|+..|+..-+. .-.....||.|...
T Consensus 7 ~~~~~C~vC~~~g--~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDGG--ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCCS--SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCCC--CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 3456799998632 222 25888899999975322 22456789999754
No 134
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=58.28 E-value=2.6 Score=32.58 Aligned_cols=14 Identities=36% Similarity=0.885 Sum_probs=13.2
Q ss_pred cCCCccchhhHhhh
Q 039490 155 CCGHLFCWSCFYQL 168 (423)
Q Consensus 155 ~CGH~FC~~Ci~~~ 168 (423)
.|||.||..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 59999999999998
No 135
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=58.00 E-value=7.1 Score=30.67 Aligned_cols=47 Identities=17% Similarity=0.487 Sum_probs=36.2
Q ss_pred CccccccccccccCc-EEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCC
Q 039490 137 EFFDCNICLDMARDP-VLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDA 188 (423)
Q Consensus 137 e~~~C~ICle~~~~p-v~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~ 188 (423)
+=|.|..|...+... ....=|..||..|..+. ....|..|.++|...
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~-----~~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRE-----DSPKCKGCFKAIVAG 79 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTC-----CCCBCSSSCCBCCSS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhh-----cCCccccCCCccccC
Confidence 457899999888654 44567889999998653 457899999998753
No 136
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=57.83 E-value=6.7 Score=34.16 Aligned_cols=48 Identities=15% Similarity=0.398 Sum_probs=36.9
Q ss_pred CccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCC
Q 039490 137 EFFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDAS 189 (423)
Q Consensus 137 e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~ 189 (423)
+-|.|..|...+.......=|..||..|.... ....|..|...|...+
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~-----f~~~C~~C~~~I~~~~ 79 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKR-----FGTKCAACQLGIPPTQ 79 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHH-----HSCBCTTTCCBCCTTS
T ss_pred ccCccCCCCCcCCCCCcccCCeeeeccccccc-----ccccccccccccCCCc
Confidence 56899999988876544567899999998775 2467999998887644
No 137
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=56.06 E-value=2.4 Score=40.88 Aligned_cols=83 Identities=13% Similarity=0.067 Sum_probs=0.0
Q ss_pred CCCceEEcccchhHHHHHHHhhhhCCCCccc---------ccchhcccCCCCCcceEEEecccccccccchhc-------
Q 039490 237 STPIEVRIQQFNSIVDAARHQTGSLDLDAAV---------RSGELEVNDPLLHISRVLPASISSLSSALTSAM------- 300 (423)
Q Consensus 237 p~~K~iVFSQftsfLdlle~~L~~~gi~~~~---------~d~~l~~f~~~dp~~~VLL~SLkaggvGLN~~l------- 300 (423)
...|.+||.........+...|+..|+.... +...++.| + +....|| ++-.+.+.|||.+-
T Consensus 258 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f-~-~~~~~vl-v~T~~~~~Gldi~~~~~Vi~~ 334 (394)
T 1fuu_A 258 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEF-R-SGSSRIL-ISTDLLARGIDVQQVSLVINY 334 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHH-H-CCCCcEE-EECChhhcCCCcccCCEEEEe
Confidence 3458999999999999999999988877443 34456777 3 3334444 56678889999431
Q ss_pred hhhhhhhccccceeeccccCcc
Q 039490 301 DSAERLVGDLEAYINSDNLRRN 322 (423)
Q Consensus 301 ~~A~~~~~~~qa~~r~hriGq~ 322 (423)
+.......-.|.+.|++|.|+.
T Consensus 335 ~~p~s~~~~~Qr~GR~~R~g~~ 356 (394)
T 1fuu_A 335 DLPANKENYIHRIGRGGRFGRK 356 (394)
T ss_dssp ----------------------
T ss_pred CCCCCHHHHHHHcCcccCCCCC
Confidence 1111112225899999999853
No 138
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=55.58 E-value=4.3 Score=34.15 Aligned_cols=32 Identities=25% Similarity=0.487 Sum_probs=23.7
Q ss_pred CccccccccccccCc----EEccCCCccchhhHhhh
Q 039490 137 EFFDCNICLDMARDP----VLTCCGHLFCWSCFYQL 168 (423)
Q Consensus 137 e~~~C~ICle~~~~p----v~~~CGH~FC~~Ci~~~ 168 (423)
+...|.+|...|.-- .--.||++||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 344799999987632 12479999999998654
No 139
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=55.35 E-value=2.5 Score=42.38 Aligned_cols=49 Identities=24% Similarity=0.410 Sum_probs=0.0
Q ss_pred CccccccccccccCc----EEccCCCccchhhHhhhhhh----cCCCCCCCCCCccc
Q 039490 137 EFFDCNICLDMARDP----VLTCCGHLFCWSCFYQLPYA----YRNVKECPACNGEV 185 (423)
Q Consensus 137 e~~~C~ICle~~~~p----v~~~CGH~FC~~Ci~~~~~~----~~~~~~CP~Cr~~i 185 (423)
+...|.+|...|.-- .--.||++||..|....... ......|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 456899999887522 22469999999998765321 11234577775443
No 140
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=54.83 E-value=8.4 Score=38.67 Aligned_cols=47 Identities=21% Similarity=0.403 Sum_probs=32.9
Q ss_pred CCccccccccccccCcEE-c--cCCCccchhhHhhhhh-------hcCCCCCCCCCCc
Q 039490 136 GEFFDCNICLDMARDPVL-T--CCGHLFCWSCFYQLPY-------AYRNVKECPACNG 183 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~-~--~CGH~FC~~Ci~~~~~-------~~~~~~~CP~Cr~ 183 (423)
..+..|.+|.+--. -+. - .|...||..||..++. .......|-+|.-
T Consensus 91 G~~~yCr~C~~Gg~-l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 91 GYQSYCSICCSGET-LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSBCSCTTTCCCSS-CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCcccceEcCCCCe-EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 45568999987432 222 2 6999999999998752 1246788999964
No 141
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=53.95 E-value=11 Score=32.08 Aligned_cols=48 Identities=21% Similarity=0.363 Sum_probs=31.5
Q ss_pred CCccccccccccccCcEEccCCCccchhhHhhhh------hh--cCCCCCCCCCCc
Q 039490 136 GEFFDCNICLDMARDPVLTCCGHLFCWSCFYQLP------YA--YRNVKECPACNG 183 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~------~~--~~~~~~CP~Cr~ 183 (423)
..+..|.||.+--.-..--.|-..||..|+..-+ +. ......|+.|.-
T Consensus 55 g~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3445799998642211112688999999998642 22 356789999954
No 142
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=53.67 E-value=5.2 Score=29.22 Aligned_cols=48 Identities=21% Similarity=0.427 Sum_probs=31.6
Q ss_pred CCccccccccccccC-cEEc---cCCCccchhhHhhhhhh--cCCCCCCCCCCc
Q 039490 136 GEFFDCNICLDMARD-PVLT---CCGHLFCWSCFYQLPYA--YRNVKECPACNG 183 (423)
Q Consensus 136 ~e~~~C~ICle~~~~-pv~~---~CGH~FC~~Ci~~~~~~--~~~~~~CP~Cr~ 183 (423)
.+...|+||...+.+ ..++ .|...|+..|+.--... ......||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 456689999988742 2233 57888888998643211 135678999965
No 143
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=53.56 E-value=3.1 Score=27.18 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=9.5
Q ss_pred CccccccccccccCc
Q 039490 137 EFFDCNICLDMARDP 151 (423)
Q Consensus 137 e~~~C~ICle~~~~p 151 (423)
+.|.||||+..+..+
T Consensus 4 EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 4 EGFICPQCMKSLGSA 18 (34)
T ss_dssp EEEECTTTCCEESSH
T ss_pred cccCCcHHHHHcCCH
Confidence 446777777666554
No 144
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=53.49 E-value=5.3 Score=36.29 Aligned_cols=47 Identities=17% Similarity=0.279 Sum_probs=31.6
Q ss_pred CccccccccccccCcEEc--cCCCccchhhHhhhhh-hcCCCCCCCCCCccc
Q 039490 137 EFFDCNICLDMARDPVLT--CCGHLFCWSCFYQLPY-AYRNVKECPACNGEV 185 (423)
Q Consensus 137 e~~~C~ICle~~~~pv~~--~CGH~FC~~Ci~~~~~-~~~~~~~CP~Cr~~i 185 (423)
....|.+|.+.-. ++. .|...|+..|+..-+. ...+...||.|+..-
T Consensus 6 ~~~~C~~C~~~g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNGGD--LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCCEE--EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCc--eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3457999985422 222 5888999999876432 234568899998644
No 145
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=52.47 E-value=7.2 Score=30.74 Aligned_cols=54 Identities=19% Similarity=0.313 Sum_probs=35.5
Q ss_pred CCccccccccccc--c-CcEEc--cCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCCc
Q 039490 136 GEFFDCNICLDMA--R-DPVLT--CCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDASI 190 (423)
Q Consensus 136 ~e~~~C~ICle~~--~-~pv~~--~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~l 190 (423)
.+...|.||...- . +.++. .|.-.|+..|+..-. ...+...||.|........+
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~-vP~g~W~C~~C~~~~~~~~~ 81 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY-IPEGQWLCRHCLQSRARPAL 81 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS-CCSSCCCCHHHHHHTTSCC-
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc-cCCCceECccccCccchhhh
Confidence 4566899999764 1 12332 588899999997532 23567889999776554443
No 146
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=52.37 E-value=5.5 Score=30.14 Aligned_cols=30 Identities=23% Similarity=0.353 Sum_probs=22.3
Q ss_pred cccccccccccCc----EEccCCCccchhhHhhh
Q 039490 139 FDCNICLDMARDP----VLTCCGHLFCWSCFYQL 168 (423)
Q Consensus 139 ~~C~ICle~~~~p----v~~~CGH~FC~~Ci~~~ 168 (423)
..|.+|...|.-- .--.||++||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 3799999887632 12469999999997643
No 147
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=51.87 E-value=2.5 Score=35.51 Aligned_cols=44 Identities=20% Similarity=0.411 Sum_probs=28.1
Q ss_pred CccccccccccccCc----EEccCCCccchhhHhhhhhhcCCCCCCCCCCc
Q 039490 137 EFFDCNICLDMARDP----VLTCCGHLFCWSCFYQLPYAYRNVKECPACNG 183 (423)
Q Consensus 137 e~~~C~ICle~~~~p----v~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~ 183 (423)
+...|..|...|.-- .--.||.+||..|..... .....|-.|-.
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~---~~vRVC~~C~~ 65 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG---NGPRLCLLCQR 65 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-------CCEEHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCC---CCceECHHHHH
Confidence 345899999887532 224799999999987642 23455777743
No 148
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=51.68 E-value=8.4 Score=28.92 Aligned_cols=32 Identities=31% Similarity=0.613 Sum_probs=24.3
Q ss_pred CCccccccccccccCcEEccC-CCccchhhHhhh
Q 039490 136 GEFFDCNICLDMARDPVLTCC-GHLFCWSCFYQL 168 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~~~C-GH~FC~~Ci~~~ 168 (423)
++..-|.||.+... -.-+.| |-.||..|+.+.
T Consensus 6 ee~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNEDAT-LRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSCCC-EEETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCCCe-EEecCCCCceehHHHHHHH
Confidence 45567999998743 123678 899999999885
No 149
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=51.67 E-value=7.5 Score=30.05 Aligned_cols=33 Identities=27% Similarity=0.539 Sum_probs=24.3
Q ss_pred CCccccccccccccCc----EEccCCCccchhhHhhh
Q 039490 136 GEFFDCNICLDMARDP----VLTCCGHLFCWSCFYQL 168 (423)
Q Consensus 136 ~e~~~C~ICle~~~~p----v~~~CGH~FC~~Ci~~~ 168 (423)
.+...|.+|...|.-- .--.||++||..|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 3445799999987632 12469999999998764
No 150
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=51.42 E-value=2.3 Score=33.62 Aligned_cols=48 Identities=21% Similarity=0.461 Sum_probs=33.8
Q ss_pred cccccccccccc---CcEEc--cCCCccchhhHhhhhh-----hcCCCCCCCCCCccc
Q 039490 138 FFDCNICLDMAR---DPVLT--CCGHLFCWSCFYQLPY-----AYRNVKECPACNGEV 185 (423)
Q Consensus 138 ~~~C~ICle~~~---~pv~~--~CGH~FC~~Ci~~~~~-----~~~~~~~CP~Cr~~i 185 (423)
...|.||...-. +.+++ .|...|+..|+..-+. .....+.|+.|....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 457999997643 34444 6889999999986533 245678899996543
No 151
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=50.71 E-value=11 Score=29.23 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=24.7
Q ss_pred CCccccccccccccCc----EEccCCCccchhhHhhh
Q 039490 136 GEFFDCNICLDMARDP----VLTCCGHLFCWSCFYQL 168 (423)
Q Consensus 136 ~e~~~C~ICle~~~~p----v~~~CGH~FC~~Ci~~~ 168 (423)
.+...|.+|...|.-- .--.||++||..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 4556899999987632 12479999999998664
No 152
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=50.45 E-value=8 Score=34.31 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=31.4
Q ss_pred ccccccccccccCcEE-ccCCCccchhhHhhhhhh-cCCCCCCCCCCcccC
Q 039490 138 FFDCNICLDMARDPVL-TCCGHLFCWSCFYQLPYA-YRNVKECPACNGEVT 186 (423)
Q Consensus 138 ~~~C~ICle~~~~pv~-~~CGH~FC~~Ci~~~~~~-~~~~~~CP~Cr~~i~ 186 (423)
+..|.+|.+.=. -+. -.|...|+..|+..-+.. ..+...||.|+..-.
T Consensus 4 ~~~C~~C~~~g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 4 EDWCAVCQNGGE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp CSSCTTTCCCSS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCccccCCCCCe-eeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 346999986422 111 258889999998664331 245688999986543
No 153
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=50.43 E-value=4.3 Score=31.71 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=20.6
Q ss_pred cccccccccc-----CcEEc-cCCCccchhhHhhh
Q 039490 140 DCNICLDMAR-----DPVLT-CCGHLFCWSCFYQL 168 (423)
Q Consensus 140 ~C~ICle~~~-----~pv~~-~CGH~FC~~Ci~~~ 168 (423)
-||-|...+. ..+.- .|||.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 4887766442 12444 49999999999988
No 154
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=50.01 E-value=7.9 Score=30.48 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=23.9
Q ss_pred CccccccccccccCc----EEccCCCccchhhHhhh
Q 039490 137 EFFDCNICLDMARDP----VLTCCGHLFCWSCFYQL 168 (423)
Q Consensus 137 e~~~C~ICle~~~~p----v~~~CGH~FC~~Ci~~~ 168 (423)
+...|.+|...|.-- .--.||++||..|....
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 445899999987632 12479999999998664
No 155
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=49.83 E-value=12 Score=27.27 Aligned_cols=46 Identities=17% Similarity=0.395 Sum_probs=31.6
Q ss_pred CCccccccccccccCcEEc--cCCCccchhhHhhhhh-hcCCCCCCCCCCc
Q 039490 136 GEFFDCNICLDMARDPVLT--CCGHLFCWSCFYQLPY-AYRNVKECPACNG 183 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~~--~CGH~FC~~Ci~~~~~-~~~~~~~CP~Cr~ 183 (423)
.....|.||... ..++. .|...|+..|+..-+. .......||.|..
T Consensus 9 ~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 345689999873 22332 6888999999986432 2345678999965
No 156
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=49.38 E-value=6.5 Score=31.07 Aligned_cols=32 Identities=25% Similarity=0.463 Sum_probs=23.9
Q ss_pred CccccccccccccCc----EEccCCCccchhhHhhh
Q 039490 137 EFFDCNICLDMARDP----VLTCCGHLFCWSCFYQL 168 (423)
Q Consensus 137 e~~~C~ICle~~~~p----v~~~CGH~FC~~Ci~~~ 168 (423)
+...|.+|...|.-- .--.||++||..|...+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 345799999887532 22479999999998765
No 157
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=49.12 E-value=7.3 Score=29.54 Aligned_cols=47 Identities=19% Similarity=0.350 Sum_probs=31.1
Q ss_pred CccccccccccccCcEEc---cCCCccchhhHhhhhhh------cCCCCCCCCCCcc
Q 039490 137 EFFDCNICLDMARDPVLT---CCGHLFCWSCFYQLPYA------YRNVKECPACNGE 184 (423)
Q Consensus 137 e~~~C~ICle~~~~pv~~---~CGH~FC~~Ci~~~~~~------~~~~~~CP~Cr~~ 184 (423)
....| ||........++ .|...|+..|+.--... ......||.|+..
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 34678 899877643333 58889999998542111 2357889999754
No 158
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.98 E-value=7.9 Score=30.03 Aligned_cols=33 Identities=24% Similarity=0.476 Sum_probs=23.9
Q ss_pred CCccccccccccccCc----EEccCCCccchhhHhhh
Q 039490 136 GEFFDCNICLDMARDP----VLTCCGHLFCWSCFYQL 168 (423)
Q Consensus 136 ~e~~~C~ICle~~~~p----v~~~CGH~FC~~Ci~~~ 168 (423)
.+...|.+|...|.-- .--.||++||..|....
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 3445899999987532 12469999999997653
No 159
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=48.21 E-value=5.6 Score=35.34 Aligned_cols=50 Identities=22% Similarity=0.495 Sum_probs=37.1
Q ss_pred CccccccccccccC---cEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCC
Q 039490 137 EFFDCNICLDMARD---PVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDAS 189 (423)
Q Consensus 137 e~~~C~ICle~~~~---pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~ 189 (423)
+-|.|..|...+.. .....=|..||..|....+. ....|+.|.++|...+
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~---~~~~C~~C~~~I~~~e 83 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG---NSGACSACGQSIPASE 83 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHS---CCEECTTTCCEECTTS
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccc---cCCccccCCCccccCc
Confidence 55889999988864 55667789999999887521 1227999999887543
No 160
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=46.73 E-value=11 Score=31.08 Aligned_cols=50 Identities=14% Similarity=0.369 Sum_probs=37.3
Q ss_pred Ccccccccccccc---CcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCC
Q 039490 137 EFFDCNICLDMAR---DPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDAS 189 (423)
Q Consensus 137 e~~~C~ICle~~~---~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~ 189 (423)
+-|.|..|...+. .+....=|..||..|....+ .....|..|.++|...+
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~---~~~~~C~~C~~~I~~~e 80 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLF---GQDGLCASCDKRIRAYE 80 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHH---CCCEECTTTCCEECTTS
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhC---CCccChhhcCCccCccc
Confidence 5689999998885 34566788999999988752 22237999999887543
No 161
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=45.86 E-value=14 Score=32.49 Aligned_cols=47 Identities=23% Similarity=0.454 Sum_probs=31.9
Q ss_pred CCccccccccccccCcEE-c--cCCCccchhhHhhhhh-------hcCCCCCCCCCCc
Q 039490 136 GEFFDCNICLDMARDPVL-T--CCGHLFCWSCFYQLPY-------AYRNVKECPACNG 183 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~-~--~CGH~FC~~Ci~~~~~-------~~~~~~~CP~Cr~ 183 (423)
..+..|.||.+-- +-+. - .|-..||..||..++. .......|-+|.-
T Consensus 77 G~~~yC~wC~~Gg-~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 77 GYQSYCTICCGGR-EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SSBSSCTTTSCCS-EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCcceeeEecCCC-eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 4556899998642 1111 1 5888999999988743 2345678999963
No 162
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=45.11 E-value=7.6 Score=35.53 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=23.2
Q ss_pred ccccccccccccCc----EEccCCCccchhhHhhh
Q 039490 138 FFDCNICLDMARDP----VLTCCGHLFCWSCFYQL 168 (423)
Q Consensus 138 ~~~C~ICle~~~~p----v~~~CGH~FC~~Ci~~~ 168 (423)
...|.+|...|.-- .--.||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 35899999887522 12469999999998654
No 163
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.42 E-value=5.2 Score=31.81 Aligned_cols=49 Identities=20% Similarity=0.419 Sum_probs=32.0
Q ss_pred CCccccccccccccC-cEEc--cCCCccchhhHhhhhh-hcCCCCCCCCCCcc
Q 039490 136 GEFFDCNICLDMARD-PVLT--CCGHLFCWSCFYQLPY-AYRNVKECPACNGE 184 (423)
Q Consensus 136 ~e~~~C~ICle~~~~-pv~~--~CGH~FC~~Ci~~~~~-~~~~~~~CP~Cr~~ 184 (423)
.+...|.||...-.. .+++ .|...|+..|+..-+. .......||.|...
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 455679999876432 2332 5888899999874322 23456789999653
No 164
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=44.15 E-value=11 Score=33.92 Aligned_cols=46 Identities=15% Similarity=0.285 Sum_probs=29.5
Q ss_pred cccccccccccCcEEccCCCccchhhHhhhhh-hcCCCCCCCCCCcc
Q 039490 139 FDCNICLDMARDPVLTCCGHLFCWSCFYQLPY-AYRNVKECPACNGE 184 (423)
Q Consensus 139 ~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~-~~~~~~~CP~Cr~~ 184 (423)
..|.+|.+.-.--.--.|...|+..|+..-+. ...+.+.||.|+..
T Consensus 3 ~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 36999985432111125778899999975332 23566789999865
No 165
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=44.08 E-value=7.4 Score=35.01 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=30.8
Q ss_pred cccccccccccCcE----Ec---cCCCccchhhHhhhh---hhc-----CCCCCCCCCCccc
Q 039490 139 FDCNICLDMARDPV----LT---CCGHLFCWSCFYQLP---YAY-----RNVKECPACNGEV 185 (423)
Q Consensus 139 ~~C~ICle~~~~pv----~~---~CGH~FC~~Ci~~~~---~~~-----~~~~~CP~Cr~~i 185 (423)
..||||...+.+.- ++ .|...|+..|+.--- +.. .....||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 46999998876541 33 588899999985321 000 1267899998653
No 166
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=43.83 E-value=6 Score=28.84 Aligned_cols=45 Identities=22% Similarity=0.505 Sum_probs=28.0
Q ss_pred CCccccccccccccCcEEc---c--CC-CccchhhHhhhhhhcCCCCCCCCCCc
Q 039490 136 GEFFDCNICLDMARDPVLT---C--CG-HLFCWSCFYQLPYAYRNVKECPACNG 183 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~~---~--CG-H~FC~~Ci~~~~~~~~~~~~CP~Cr~ 183 (423)
.+...| ||...... .++ . |. ..|+..|+.- .....+...||.|..
T Consensus 8 ~e~~~C-~C~~~~~g-~mi~CD~cdC~~~wfH~~Cvgl-~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVGL-TTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEECCS-EEEECSCTTCSSCEEETGGGTC-SSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcCCC-CEEEeCCCCCCCceEehhcCCC-CcCCCCCEECcCccC
Confidence 345677 89886543 344 3 55 5799999872 222246678999854
No 167
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.68 E-value=5.7 Score=28.35 Aligned_cols=47 Identities=17% Similarity=0.485 Sum_probs=30.1
Q ss_pred CCccccccccccccCcEE-ccCCCccchhhHhhhhh-hcCCCCCCCCCCc
Q 039490 136 GEFFDCNICLDMARDPVL-TCCGHLFCWSCFYQLPY-AYRNVKECPACNG 183 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~-~~CGH~FC~~Ci~~~~~-~~~~~~~CP~Cr~ 183 (423)
..+..|.||...- +-+. -.|...|+..|+..-+. .......||.|..
T Consensus 7 ~~~~~C~vC~~~g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKSG-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCSS-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCCC-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3456799998742 2222 36888999999875322 2245667998853
No 168
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=43.51 E-value=39 Score=34.62 Aligned_cols=93 Identities=8% Similarity=0.022 Sum_probs=62.3
Q ss_pred chhhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhCCCCccc---------ccchhcccCCCCCcceEEEeccc
Q 039490 220 ARRIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSLDLDAAV---------RSGELEVNDPLLHISRVLPASIS 290 (423)
Q Consensus 220 stKieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~gi~~~~---------~d~~l~~f~~~dp~~~VLL~SLk 290 (423)
..+.+.+.+.+... ++.+.|||-.-....+.+...|...|+.... +...++.| + .....||+ +-.
T Consensus 221 ~~~~~~l~~~l~~~---~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f-~-~g~~~vlV-aT~ 294 (523)
T 1oyw_A 221 FKPLDQLMRYVQEQ---RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKF-Q-RDDLQIVV-ATV 294 (523)
T ss_dssp SSHHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH-H-TTSCSEEE-ECT
T ss_pred CCHHHHHHHHHHhc---CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHH-H-cCCCeEEE-Eec
Confidence 34566676666543 4568999999999999999999999988544 33455778 3 33455654 456
Q ss_pred ccccccchhc----------hhhhhhhccccceeeccccCc
Q 039490 291 SLSSALTSAM----------DSAERLVGDLEAYINSDNLRR 321 (423)
Q Consensus 291 aggvGLN~~l----------~~A~~~~~~~qa~~r~hriGq 321 (423)
+.+.|+|.+- .+.... +|.+-|..|-|+
T Consensus 295 a~~~GiD~p~v~~VI~~~~p~s~~~y---~Qr~GRaGR~g~ 332 (523)
T 1oyw_A 295 AFGMGINKPNVRFVVHFDIPRNIESY---YQETGRAGRDGL 332 (523)
T ss_dssp TSCTTTCCTTCCEEEESSCCSSHHHH---HHHHTTSCTTSS
T ss_pred hhhCCCCccCccEEEEECCCCCHHHH---HHHhccccCCCC
Confidence 7889998321 122222 477888888774
No 169
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=43.17 E-value=6.4 Score=28.62 Aligned_cols=45 Identities=20% Similarity=0.451 Sum_probs=28.5
Q ss_pred CCccccccccccccCcEEc---c--CC-CccchhhHhhhhhhcCCCCCCCCCCc
Q 039490 136 GEFFDCNICLDMARDPVLT---C--CG-HLFCWSCFYQLPYAYRNVKECPACNG 183 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~~---~--CG-H~FC~~Ci~~~~~~~~~~~~CP~Cr~ 183 (423)
.+...| ||...... .++ . |. ..|+..|+.-- ........||.|+.
T Consensus 7 ~e~~yC-~C~~~~~g-~mi~CD~~~C~~~wfH~~Cvgl~-~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSYG-EMIGCDNPDCPIEWFHFACVDLT-TKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECCS-EEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCCC-CeeEeeCCCCCCCCEecccCCcc-cCCCCCEECcCccC
Confidence 345677 99886543 343 3 65 68999998732 22235678999854
No 170
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=42.79 E-value=9.1 Score=35.33 Aligned_cols=31 Identities=23% Similarity=0.489 Sum_probs=23.4
Q ss_pred ccccccccccccCc----EEccCCCccchhhHhhh
Q 039490 138 FFDCNICLDMARDP----VLTCCGHLFCWSCFYQL 168 (423)
Q Consensus 138 ~~~C~ICle~~~~p----v~~~CGH~FC~~Ci~~~ 168 (423)
...|.+|...|.-- .--.||++||..|....
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 34899999887632 22479999999998764
No 171
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=41.51 E-value=18 Score=29.23 Aligned_cols=47 Identities=21% Similarity=0.451 Sum_probs=30.7
Q ss_pred CCccccccccccccC-c-EE-ccCCCccchhhHhhhhhh-cCCCCCCCCCC
Q 039490 136 GEFFDCNICLDMARD-P-VL-TCCGHLFCWSCFYQLPYA-YRNVKECPACN 182 (423)
Q Consensus 136 ~e~~~C~ICle~~~~-p-v~-~~CGH~FC~~Ci~~~~~~-~~~~~~CP~Cr 182 (423)
.++..|.||.+.-.. . +. ..|+..|+..|+...... ......||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 355689999876432 2 33 479999999999876431 13456677664
No 172
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=40.86 E-value=12 Score=30.76 Aligned_cols=24 Identities=29% Similarity=0.672 Sum_probs=16.4
Q ss_pred ccCCCccchhhHhhhhhhcCCCCCCCCCCccc
Q 039490 154 TCCGHLFCWSCFYQLPYAYRNVKECPACNGEV 185 (423)
Q Consensus 154 ~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i 185 (423)
..||+.|+ .. ......||.|+..-
T Consensus 71 ~~CG~~F~----~~----~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 71 RKCGFVFK----AE----INIPSRCPKCKSEW 94 (105)
T ss_dssp TTTCCBCC----CC----SSCCSSCSSSCCCC
T ss_pred hhCcCeec----cc----CCCCCCCcCCCCCc
Confidence 46899982 22 34567899998653
No 173
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=40.85 E-value=31 Score=26.17 Aligned_cols=49 Identities=18% Similarity=0.353 Sum_probs=31.2
Q ss_pred CCcccccccccccc-CcEEc---cCCCccchhhHhhhhhhc--CCCCCCCCCCccc
Q 039490 136 GEFFDCNICLDMAR-DPVLT---CCGHLFCWSCFYQLPYAY--RNVKECPACNGEV 185 (423)
Q Consensus 136 ~e~~~C~ICle~~~-~pv~~---~CGH~FC~~Ci~~~~~~~--~~~~~CP~Cr~~i 185 (423)
.+...| ||..... ...++ .|...|+..|+.--.... .....||.|+...
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 345567 8988764 22232 588889999985432111 3567899998654
No 174
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=40.82 E-value=8.7 Score=31.17 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=10.5
Q ss_pred ccchhhHhhhhh
Q 039490 159 LFCWSCFYQLPY 170 (423)
Q Consensus 159 ~FC~~Ci~~~~~ 170 (423)
.||+.|+..|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999975
No 175
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=40.62 E-value=28 Score=27.47 Aligned_cols=48 Identities=19% Similarity=0.360 Sum_probs=31.5
Q ss_pred CCccccccccccccCcEE-ccCCCccchhhHhhhhh-hcCCCCCCCCCCcc
Q 039490 136 GEFFDCNICLDMARDPVL-TCCGHLFCWSCFYQLPY-AYRNVKECPACNGE 184 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~-~~CGH~FC~~Ci~~~~~-~~~~~~~CP~Cr~~ 184 (423)
.....|.+|.+.- +-+. -.|.-.|+..|+..-+. ...+...||.|...
T Consensus 23 ~n~~~C~vC~~~g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKPG-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSSS-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCCC-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 4556899998752 2111 25878899999866432 23456789999753
No 176
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=40.57 E-value=9.6 Score=41.69 Aligned_cols=51 Identities=27% Similarity=0.533 Sum_probs=35.2
Q ss_pred CCccccccccccccCc--------E--EccCCCcc--------------------chhhHhhhhhh-----cCCCCCCCC
Q 039490 136 GEFFDCNICLDMARDP--------V--LTCCGHLF--------------------CWSCFYQLPYA-----YRNVKECPA 180 (423)
Q Consensus 136 ~e~~~C~ICle~~~~p--------v--~~~CGH~F--------------------C~~Ci~~~~~~-----~~~~~~CP~ 180 (423)
-+.-.|+-|+..+.+| . .|.||--| |..|-.+|-.. ......||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 4556899999887776 1 25677665 99999998431 123356999
Q ss_pred CCcccC
Q 039490 181 CNGEVT 186 (423)
Q Consensus 181 Cr~~i~ 186 (423)
|.-.+.
T Consensus 184 CGP~l~ 189 (772)
T 4g9i_A 184 CGPSYR 189 (772)
T ss_dssp TSCCEE
T ss_pred CCceEE
Confidence 986553
No 177
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=40.32 E-value=8.9 Score=31.05 Aligned_cols=12 Identities=25% Similarity=0.650 Sum_probs=10.5
Q ss_pred ccchhhHhhhhh
Q 039490 159 LFCWSCFYQLPY 170 (423)
Q Consensus 159 ~FC~~Ci~~~~~ 170 (423)
.||+.|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999965
No 178
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=39.62 E-value=10 Score=40.79 Aligned_cols=50 Identities=26% Similarity=0.547 Sum_probs=34.1
Q ss_pred CCccccccccccccCc--------E--EccCCCcc--------------------chhhHhhhhhh-----cCCCCCCCC
Q 039490 136 GEFFDCNICLDMARDP--------V--LTCCGHLF--------------------CWSCFYQLPYA-----YRNVKECPA 180 (423)
Q Consensus 136 ~e~~~C~ICle~~~~p--------v--~~~CGH~F--------------------C~~Ci~~~~~~-----~~~~~~CP~ 180 (423)
-+.-.|+-|+..+.+| . .|.||--| |..|..+|-.. ......||.
T Consensus 15 pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~ 94 (657)
T 3ttc_A 15 PDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPE 94 (657)
T ss_dssp CCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCcc
Confidence 3456899999877765 1 24577655 99999998431 123456999
Q ss_pred CCccc
Q 039490 181 CNGEV 185 (423)
Q Consensus 181 Cr~~i 185 (423)
|.=.+
T Consensus 95 CGP~l 99 (657)
T 3ttc_A 95 CGPYL 99 (657)
T ss_dssp TSCCE
T ss_pred cCccc
Confidence 97655
No 179
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=38.59 E-value=11 Score=27.29 Aligned_cols=47 Identities=15% Similarity=0.440 Sum_probs=30.5
Q ss_pred CccccccccccccCcEE-ccCCCccchhhHhhhhh-hcCCCCCCCCCCcc
Q 039490 137 EFFDCNICLDMARDPVL-TCCGHLFCWSCFYQLPY-AYRNVKECPACNGE 184 (423)
Q Consensus 137 e~~~C~ICle~~~~pv~-~~CGH~FC~~Ci~~~~~-~~~~~~~CP~Cr~~ 184 (423)
.+..|.||... .+-+. -.|...|+..|+..-+. ...+...||.|...
T Consensus 4 ~~~~C~vC~~~-g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKS-GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCC-SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCC-CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 34579999874 22222 36888999999985322 22456789999643
No 180
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=38.55 E-value=10 Score=27.97 Aligned_cols=46 Identities=17% Similarity=0.397 Sum_probs=30.2
Q ss_pred CccccccccccccCcEE-ccCCCccchhhHhhhhh-hcCCCCCCCCCCc
Q 039490 137 EFFDCNICLDMARDPVL-TCCGHLFCWSCFYQLPY-AYRNVKECPACNG 183 (423)
Q Consensus 137 e~~~C~ICle~~~~pv~-~~CGH~FC~~Ci~~~~~-~~~~~~~CP~Cr~ 183 (423)
.+..|.||.+.- +-+. -.|...|+..|+..-+. .......||.|..
T Consensus 7 ~~~~C~vC~~~g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 7 NEDECAVCRDGG-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSBSSSSCCS-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCCC-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 456899998742 2222 26888899999875322 2345678999964
No 181
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=38.46 E-value=39 Score=32.29 Aligned_cols=73 Identities=7% Similarity=0.014 Sum_probs=51.6
Q ss_pred chhhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhCCCCccc---------ccchhcccCCCCCcceEEEeccc
Q 039490 220 ARRIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSLDLDAAV---------RSGELEVNDPLLHISRVLPASIS 290 (423)
Q Consensus 220 stKieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~gi~~~~---------~d~~l~~f~~~dp~~~VLL~SLk 290 (423)
..|+..+...+... ...+.+||-........+...|...++.... +...++.| + +....|| ++-.
T Consensus 251 ~~~~~~l~~~~~~~---~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f-~-~g~~~vl-v~T~ 324 (412)
T 3fht_A 251 DEKFQALCNLYGAI---TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF-R-EGKEKVL-VTTN 324 (412)
T ss_dssp HHHHHHHHHHHHHH---SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHH-H-TTSCSEE-EECG
T ss_pred HHHHHHHHHHHhhc---CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHH-H-CCCCcEE-EEcC
Confidence 34666666666543 2348999999999999999999999887443 34456888 3 3345554 5557
Q ss_pred ccccccch
Q 039490 291 SLSSALTS 298 (423)
Q Consensus 291 aggvGLN~ 298 (423)
+.+.|+|.
T Consensus 325 ~~~~Gidi 332 (412)
T 3fht_A 325 VCARGIDV 332 (412)
T ss_dssp GGTSSCCC
T ss_pred ccccCCCc
Confidence 88889995
No 182
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=38.20 E-value=11 Score=41.28 Aligned_cols=51 Identities=25% Similarity=0.518 Sum_probs=34.4
Q ss_pred CCccccccccccccCc--------E--EccCCCcc--------------------chhhHhhhhhh-----cCCCCCCCC
Q 039490 136 GEFFDCNICLDMARDP--------V--LTCCGHLF--------------------CWSCFYQLPYA-----YRNVKECPA 180 (423)
Q Consensus 136 ~e~~~C~ICle~~~~p--------v--~~~CGH~F--------------------C~~Ci~~~~~~-----~~~~~~CP~ 180 (423)
-+.-.|+-|+..+.+| . .|.||--| |..|..+|-.. ......||.
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 3556899999887765 1 25677544 99999998431 123356999
Q ss_pred CCcccC
Q 039490 181 CNGEVT 186 (423)
Q Consensus 181 Cr~~i~ 186 (423)
|.-.+.
T Consensus 189 CGP~l~ 194 (761)
T 3vth_A 189 CGPSLS 194 (761)
T ss_dssp TSCCEE
T ss_pred cCCeeE
Confidence 976553
No 183
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=38.03 E-value=26 Score=25.81 Aligned_cols=44 Identities=14% Similarity=0.273 Sum_probs=32.7
Q ss_pred CccccccccccccC-cEEccCCCccch-hhHhhhhhhcCCCCCCCCCCccc
Q 039490 137 EFFDCNICLDMARD-PVLTCCGHLFCW-SCFYQLPYAYRNVKECPACNGEV 185 (423)
Q Consensus 137 e~~~C~ICle~~~~-pv~~~CGH~FC~-~Ci~~~~~~~~~~~~CP~Cr~~i 185 (423)
+-|.|..|...+.. .....=|..||. .|.... ....|..|...+
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~-----f~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAM-----FGPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHH-----SSCCCSSCCCSS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHH-----hCccCCCcCCce
Confidence 45789999988875 455667889999 698764 346788887544
No 184
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=37.89 E-value=13 Score=29.56 Aligned_cols=46 Identities=20% Similarity=0.420 Sum_probs=28.2
Q ss_pred CCccccccccccccCcEEc--cCC---CccchhhHhhhhhhcCCCCCCCC-CCc
Q 039490 136 GEFFDCNICLDMARDPVLT--CCG---HLFCWSCFYQLPYAYRNVKECPA-CNG 183 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~~--~CG---H~FC~~Ci~~~~~~~~~~~~CP~-Cr~ 183 (423)
.+...| ||........+. .|. ..|+..|+.-- ........||. |..
T Consensus 24 ~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVgl~-~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVGLK-QAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSSCS-SCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCCCC-cCCCCCccCChhhcc
Confidence 455678 999764444332 333 57888888631 12235678999 853
No 185
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=37.83 E-value=18 Score=27.33 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=32.1
Q ss_pred CCccccccccccc---cCcEEc--cCCCccchhhHhhhhhhcCCCCCCCCCCc
Q 039490 136 GEFFDCNICLDMA---RDPVLT--CCGHLFCWSCFYQLPYAYRNVKECPACNG 183 (423)
Q Consensus 136 ~e~~~C~ICle~~---~~pv~~--~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~ 183 (423)
.+...|.||.+.- .+.+++ .|.-.|+..|+..-. ...+...||.|..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~-vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY-IPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS-CCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc-CCCCCcCCccCcC
Confidence 4556899998753 233443 688899999987532 2346788999964
No 186
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=36.60 E-value=11 Score=28.32 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=30.5
Q ss_pred CCCccccccccccccCc-EEc---cCCCccchhhHhhhhh-hcCCCCCCCCCCcc
Q 039490 135 GGEFFDCNICLDMARDP-VLT---CCGHLFCWSCFYQLPY-AYRNVKECPACNGE 184 (423)
Q Consensus 135 ~~e~~~C~ICle~~~~p-v~~---~CGH~FC~~Ci~~~~~-~~~~~~~CP~Cr~~ 184 (423)
..+...| ||.....+. .++ .|...|+..|+.--.. .......||.|+..
T Consensus 13 ~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 13 DNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp CSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred CCcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 3466789 798876442 233 5777888888764311 12356779999653
No 187
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=36.50 E-value=17 Score=27.63 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=30.9
Q ss_pred CCccccccccccccCcEEc-----cCCCccchhhHhhhhh------hcCCCCCCCCCCcc
Q 039490 136 GEFFDCNICLDMARDPVLT-----CCGHLFCWSCFYQLPY------AYRNVKECPACNGE 184 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~~-----~CGH~FC~~Ci~~~~~------~~~~~~~CP~Cr~~ 184 (423)
.+...| ||........++ .|...|+..|+.---. .......||.|+..
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 456678 899874444333 5888999999864211 01246789999754
No 188
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=35.99 E-value=11 Score=26.31 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=16.6
Q ss_pred ccCCCccchhhHhhhhhhcCCCCCCCCCCccc
Q 039490 154 TCCGHLFCWSCFYQLPYAYRNVKECPACNGEV 185 (423)
Q Consensus 154 ~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i 185 (423)
+.||+.|-..=+.. -..-.||.|...+
T Consensus 7 ~rCg~~fs~~el~~-----lP~IrCpyCGyri 33 (48)
T 4ayb_P 7 GKCWKTFTDEQLKV-----LPGVRCPYCGYKI 33 (48)
T ss_dssp CCTTTTCCCCCSCC-----CSSSCCTTTCCSC
T ss_pred eccCCCccHHHHhh-----CCCcccCccCcEE
Confidence 45777766543332 2356799998654
No 189
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=35.16 E-value=3.7 Score=32.16 Aligned_cols=40 Identities=18% Similarity=0.502 Sum_probs=22.5
Q ss_pred cccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccC
Q 039490 139 FDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVT 186 (423)
Q Consensus 139 ~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~ 186 (423)
..||.|...+... =++.+|..|-..+ .....||-|.+++.
T Consensus 3 ~~CP~C~~~l~~~----~~~~~C~~C~~~~----~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERN----GDTAHCETCAKDF----SLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEEC----SSEEECTTTCCEE----EEEEECSSSCSCCC
T ss_pred CCCCCCCCccccC----CCceECccccccC----CCcccCcchhhHHH
Confidence 4788888765421 1244466666554 11226777776664
No 190
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=35.10 E-value=14 Score=25.73 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=9.7
Q ss_pred cCCCCCCCCCCcc
Q 039490 172 YRNVKECPACNGE 184 (423)
Q Consensus 172 ~~~~~~CP~Cr~~ 184 (423)
......||.|...
T Consensus 27 lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 27 LPDDWCCPVCGVS 39 (46)
T ss_dssp SCTTCBCTTTCCB
T ss_pred CCCCCcCcCCCCc
Confidence 4556789999864
No 191
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=34.43 E-value=11 Score=27.74 Aligned_cols=45 Identities=27% Similarity=0.614 Sum_probs=28.5
Q ss_pred CCccccccccccccCcEEc---c--CC-CccchhhHhhhhhhcCCCCCCCCCCc
Q 039490 136 GEFFDCNICLDMARDPVLT---C--CG-HLFCWSCFYQLPYAYRNVKECPACNG 183 (423)
Q Consensus 136 ~e~~~C~ICle~~~~pv~~---~--CG-H~FC~~Ci~~~~~~~~~~~~CP~Cr~ 183 (423)
.+...| ||...... .++ . |. ..|+..|+.-- ........||.|+.
T Consensus 9 ~e~~yC-~C~~~~~g-~MI~CD~c~C~~~WfH~~Cvgl~-~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVSYG-EMIGCDNEQCPIEWFHFSCVSLT-YKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEECCS-EEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCCCC-CeeeeeCCCCCcccEecccCCcC-cCCCCCEECcCccc
Confidence 345677 99886443 344 3 54 78999998732 12245678999964
No 192
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=32.67 E-value=11 Score=23.07 Aligned_cols=8 Identities=50% Similarity=1.290 Sum_probs=3.5
Q ss_pred HHHhhhhh
Q 039490 57 ARQRQRWR 64 (423)
Q Consensus 57 ~R~r~R~R 64 (423)
+.+|+|||
T Consensus 7 RnRRRRWR 14 (26)
T 1etf_B 7 RNRRRRWR 14 (26)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 33444444
No 193
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=31.55 E-value=15 Score=31.35 Aligned_cols=47 Identities=19% Similarity=0.321 Sum_probs=30.7
Q ss_pred Ccccccccccccc---Cc--EEccCCCccchhhHhhhhh-hcCCCCCCCCCCc
Q 039490 137 EFFDCNICLDMAR---DP--VLTCCGHLFCWSCFYQLPY-AYRNVKECPACNG 183 (423)
Q Consensus 137 e~~~C~ICle~~~---~p--v~~~CGH~FC~~Ci~~~~~-~~~~~~~CP~Cr~ 183 (423)
....|.+|...|. +. +-..|.|.+|..|-..... .......|-+|++
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 3458999999873 12 2357999999999765311 1123466888865
No 194
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.92 E-value=33 Score=26.22 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=26.4
Q ss_pred cccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCC
Q 039490 139 FDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDA 188 (423)
Q Consensus 139 ~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~ 188 (423)
..|..|...+...++..-|..|+..| ..|-.|++.|...
T Consensus 26 ~~C~~C~~~I~~~~v~a~~~~~H~~C-----------F~C~~C~~~L~~~ 64 (90)
T 2dar_A 26 PMCAHCNQVIRGPFLVALGKSWHPEE-----------FNCAHCKNTMAYI 64 (90)
T ss_dssp CBBSSSCCBCCSCEEEETTEEECTTT-----------CBCSSSCCBCSSS
T ss_pred CCCccCCCEecceEEEECCccccccC-----------CccCCCCCCCCCC
Confidence 47888888877666666666665555 3477787777643
No 195
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=30.31 E-value=67 Score=33.57 Aligned_cols=92 Identities=8% Similarity=-0.027 Sum_probs=59.3
Q ss_pred hhHHHHHHHHhcCCCCCCceEEcccchhHHHHHHHhhhhCCCCccc---------ccchhcccCCCCCcceEEEeccccc
Q 039490 222 RIESVRQQLVNRRPVSTPIEVRIQQFNSIVDAARHQTGSLDLDAAV---------RSGELEVNDPLLHISRVLPASISSL 292 (423)
Q Consensus 222 KieaLr~~L~~~~~~p~~K~iVFSQftsfLdlle~~L~~~gi~~~~---------~d~~l~~f~~~dp~~~VLL~SLkag 292 (423)
+++.+.+.+. ...++.+.|||-.-....+.+...|...|+.... +...++.| + .....||+ +-.+.
T Consensus 253 ~~~~l~~~l~--~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F-~-~g~~~VlV-AT~a~ 327 (591)
T 2v1x_A 253 FIEDIVKLIN--GRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKW-S-ANEIQVVV-ATVAF 327 (591)
T ss_dssp HHHHHHHHHT--TTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH-H-TTSSSEEE-ECTTS
T ss_pred HHHHHHHHHH--HhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHH-H-cCCCeEEE-Eechh
Confidence 3444444443 2235678999999999999999999999988544 34456778 3 33455654 44778
Q ss_pred ccccchhc----------hhhhhhhccccceeeccccCc
Q 039490 293 SSALTSAM----------DSAERLVGDLEAYINSDNLRR 321 (423)
Q Consensus 293 gvGLN~~l----------~~A~~~~~~~qa~~r~hriGq 321 (423)
+.|+|.+- .+.... +|.+-|..|-|+
T Consensus 328 ~~GID~p~V~~VI~~~~p~s~~~y---~Qr~GRaGR~G~ 363 (591)
T 2v1x_A 328 GMGIDKPDVRFVIHHSMSKSMENY---YQESGRAGRDDM 363 (591)
T ss_dssp CTTCCCSCEEEEEESSCCSSHHHH---HHHHTTSCTTSS
T ss_pred hcCCCcccccEEEEeCCCCCHHHH---HHHhccCCcCCC
Confidence 89998321 122222 377777777774
No 196
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=28.63 E-value=13 Score=32.55 Aligned_cols=48 Identities=19% Similarity=0.440 Sum_probs=31.0
Q ss_pred CCccccccccccccC-c-EE--ccCCCccchhhHhhhhhh--cCCCCCCCCCCcc
Q 039490 136 GEFFDCNICLDMARD-P-VL--TCCGHLFCWSCFYQLPYA--YRNVKECPACNGE 184 (423)
Q Consensus 136 ~e~~~C~ICle~~~~-p-v~--~~CGH~FC~~Ci~~~~~~--~~~~~~CP~Cr~~ 184 (423)
.+...| +|.....+ . .+ -.|...|+..|+.--... ......||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 456689 99987542 2 22 258889999998542111 2457889999753
No 197
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=27.37 E-value=46 Score=25.31 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=26.6
Q ss_pred ccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCC
Q 039490 138 FFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDA 188 (423)
Q Consensus 138 ~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~ 188 (423)
...|.-|.+.+...++..-+..|+..| ..|-.|...|...
T Consensus 25 ~~~C~~C~~~I~~~~~~a~~~~~H~~C-----------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKARDKYRHPEC-----------FVCADCNLNLKQK 64 (89)
T ss_dssp CCBCTTTCCBCCSCCEESSSCEECTTT-----------CCCSSSCCCTTTS
T ss_pred CCCcccCCCEecccEEEECCceECccC-----------CEecCCCCCCCCC
Confidence 347888888777665556666666555 3477787777653
No 198
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=26.65 E-value=17 Score=33.76 Aligned_cols=44 Identities=20% Similarity=0.431 Sum_probs=25.5
Q ss_pred ccccccccccCc-EEc--cCCCccchhhHhhhhhhc-CC-CCCCCCCCc
Q 039490 140 DCNICLDMARDP-VLT--CCGHLFCWSCFYQLPYAY-RN-VKECPACNG 183 (423)
Q Consensus 140 ~C~ICle~~~~p-v~~--~CGH~FC~~Ci~~~~~~~-~~-~~~CP~Cr~ 183 (423)
.|.+|...-... .++ .|...|+..|+..-+... .+ ...||.|..
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 588887643222 222 588889999998643322 33 578999964
No 199
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=26.37 E-value=51 Score=23.36 Aligned_cols=39 Identities=15% Similarity=0.288 Sum_probs=25.6
Q ss_pred cccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCC
Q 039490 139 FDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDA 188 (423)
Q Consensus 139 ~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~ 188 (423)
..|..|...+...++..-|..|+..| ..|-.|+.++...
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C-----------F~C~~C~~~L~~~ 44 (66)
T 1nyp_A 6 PICGACRRPIEGRVVNAMGKQWHVEH-----------FVCAKCEKPFLGH 44 (66)
T ss_dssp CEETTTTEECCSCEECCTTSBEETTT-----------CBCTTTCCBCSSS
T ss_pred CCCcccCCEecceEEEECccccccCc-----------CEECCCCCCCCCC
Confidence 36888888777666666666655555 3477787777643
No 200
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.20 E-value=58 Score=23.40 Aligned_cols=39 Identities=21% Similarity=0.511 Sum_probs=24.9
Q ss_pred ccccccccccc--CcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCC
Q 039490 139 FDCNICLDMAR--DPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDA 188 (423)
Q Consensus 139 ~~C~ICle~~~--~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~ 188 (423)
..|.-|...+. +.++..-|..|+..|+ .|-.|..++...
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~~ 46 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGGQTWHEHCF-----------LCSGCEQPLGSR 46 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTTCCEETTTC-----------BCTTTCCBTTTS
T ss_pred CCCccCCCccccCccEEEECccccCcccC-----------eECCCCCcCCCC
Confidence 36888888776 4566666666665553 466777776543
No 201
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.68 E-value=26 Score=26.83 Aligned_cols=44 Identities=18% Similarity=0.388 Sum_probs=28.8
Q ss_pred ccccccccccC-cEEc--cCCCccchhhHhhhhhh-cCC-CCCCCCCCc
Q 039490 140 DCNICLDMARD-PVLT--CCGHLFCWSCFYQLPYA-YRN-VKECPACNG 183 (423)
Q Consensus 140 ~C~ICle~~~~-pv~~--~CGH~FC~~Ci~~~~~~-~~~-~~~CP~Cr~ 183 (423)
.|.||...-.. .+++ .|...|+..|+..-+.. -.+ ...||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 68889864322 2332 68889999999854332 234 678999964
No 202
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=25.35 E-value=83 Score=25.48 Aligned_cols=34 Identities=24% Similarity=0.447 Sum_probs=26.4
Q ss_pred Ccccccccccccc--CcEEccCCCccchhhHhhhhh
Q 039490 137 EFFDCNICLDMAR--DPVLTCCGHLFCWSCFYQLPY 170 (423)
Q Consensus 137 e~~~C~ICle~~~--~pv~~~CGH~FC~~Ci~~~~~ 170 (423)
+-|.|..|...+. +.....=|..||..|....+.
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHH
T ss_pred ccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhc
Confidence 5688999999884 345566789999999988643
No 203
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=25.23 E-value=39 Score=29.76 Aligned_cols=53 Identities=23% Similarity=0.473 Sum_probs=0.0
Q ss_pred cccccccccccCc-EEccCCCccchhhHhhhhhhc-------------------------------------------CC
Q 039490 139 FDCNICLDMARDP-VLTCCGHLFCWSCFYQLPYAY-------------------------------------------RN 174 (423)
Q Consensus 139 ~~C~ICle~~~~p-v~~~CGH~FC~~Ci~~~~~~~-------------------------------------------~~ 174 (423)
|.|..|...+... ....=|..||..|....+... ..
T Consensus 35 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 114 (192)
T 1b8t_A 35 FLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGG 114 (192)
T ss_dssp CBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred CcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCCCcccccccccccccCCCCcCccccccccCC
Q ss_pred CCCCCCCCcccCCCCce
Q 039490 175 VKECPACNGEVTDASII 191 (423)
Q Consensus 175 ~~~CP~Cr~~i~~~~l~ 191 (423)
...|+.|.++|.....+
T Consensus 115 ~~~C~~C~~~I~~~~~v 131 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKV 131 (192)
T ss_dssp CEECTTTSCEECSSSCE
T ss_pred CCcCCCCCCEecCcEEE
No 204
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=25.13 E-value=14 Score=30.58 Aligned_cols=11 Identities=55% Similarity=0.519 Sum_probs=4.6
Q ss_pred HHHhhhhhccC
Q 039490 57 ARQRQRWRQGQ 67 (423)
Q Consensus 57 ~R~r~R~RQ~~ 67 (423)
+|+|||.||.|
T Consensus 40 RRRRWR~RQrQ 50 (115)
T 2x7l_M 40 RRRRWRERQRQ 50 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 205
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.70 E-value=44 Score=24.04 Aligned_cols=39 Identities=18% Similarity=0.449 Sum_probs=24.1
Q ss_pred cccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCC
Q 039490 139 FDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDA 188 (423)
Q Consensus 139 ~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~ 188 (423)
..|..|...+...++..-|..|+..| ..|-.|+.++...
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C-----------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 6 SGCHQCGEFIIGRVIKAMNNSWHPEC-----------FRCDLCQEVLADI 44 (70)
T ss_dssp SBCSSSCCBCCSCCEEETTEEECTTT-----------SBCSSSCCBCSSS
T ss_pred CcCccCCCEecceEEEECcccccccC-----------CEeCCCCCcCCCC
Confidence 36888887776555555555555544 3466777776654
No 206
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=24.42 E-value=27 Score=20.96 Aligned_cols=26 Identities=38% Similarity=0.424 Sum_probs=13.5
Q ss_pred ccccccccCccCCCCCcchhhhhhcc
Q 039490 397 SRRRSASLRASDVDSGICRELRRRRL 422 (423)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (423)
||||..--|--.-|..|..+..||||
T Consensus 2 srrrrrrkrkrewdddddppkkrrrl 27 (28)
T 3ukx_C 2 SRRRRRRKRKREWDDDDDPPKKRRRL 27 (28)
T ss_dssp ----CCCCCCCCCCCSSSCCSCCCCC
T ss_pred chhHHHHHhhcccccCCCchhhhhcc
Confidence 34444444555556666667777776
No 207
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=24.24 E-value=27 Score=26.79 Aligned_cols=44 Identities=20% Similarity=0.408 Sum_probs=27.0
Q ss_pred ccccccccccCc-EEc--cCCCccchhhHhhhhhh-cCCC-CCCCCCCc
Q 039490 140 DCNICLDMARDP-VLT--CCGHLFCWSCFYQLPYA-YRNV-KECPACNG 183 (423)
Q Consensus 140 ~C~ICle~~~~p-v~~--~CGH~FC~~Ci~~~~~~-~~~~-~~CP~Cr~ 183 (423)
.|.||...-... +++ .|...|+..|+..-+.. -... ..||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466676544322 332 58888999999864332 2233 78999974
No 208
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=22.97 E-value=38 Score=27.91 Aligned_cols=28 Identities=18% Similarity=0.365 Sum_probs=18.7
Q ss_pred ccccccccccccCc-EEccCCCccchhhH
Q 039490 138 FFDCNICLDMARDP-VLTCCGHLFCWSCF 165 (423)
Q Consensus 138 ~~~C~ICle~~~~p-v~~~CGH~FC~~Ci 165 (423)
...|.-|...+... ++..-|..|+..|+
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF 89 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCL 89 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTS
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEccccc
Confidence 35798898877765 35556666666664
No 209
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.84 E-value=71 Score=22.78 Aligned_cols=37 Identities=19% Similarity=0.397 Sum_probs=21.7
Q ss_pred ccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCC
Q 039490 140 DCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTD 187 (423)
Q Consensus 140 ~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~ 187 (423)
.|..|...+....+..-|..|+..| ..|-.|+.++..
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~C-----------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 7 GCVQCKKPITTGGVTYREQPWHKEC-----------FVCTACRKQLSG 43 (70)
T ss_dssp BCSSSCCBCCSSEEESSSSEEETTT-----------SBCSSSCCBCTT
T ss_pred CCcccCCeeccceEEECccccCCCC-----------CccCCCCCcCCc
Confidence 5777777666555555555555444 346667666643
No 210
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.59 E-value=43 Score=24.86 Aligned_cols=38 Identities=13% Similarity=0.294 Sum_probs=26.1
Q ss_pred ccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccC
Q 039490 138 FFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVT 186 (423)
Q Consensus 138 ~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~ 186 (423)
...|.-|...+...++..-+..|+..|+ .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPECY-----------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTTT-----------SCSSSCCCHH
T ss_pred CCccccCCCCccCcEEEECcceeCcCcC-----------eeCCCCCCCC
Confidence 3479999888776666666766666553 4777777764
No 211
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=22.40 E-value=41 Score=27.29 Aligned_cols=44 Identities=20% Similarity=0.479 Sum_probs=28.5
Q ss_pred ccccccccccC--cEE--ccCCCccchhhHhhhhh-hcCCCCCCCCCCc
Q 039490 140 DCNICLDMARD--PVL--TCCGHLFCWSCFYQLPY-AYRNVKECPACNG 183 (423)
Q Consensus 140 ~C~ICle~~~~--pv~--~~CGH~FC~~Ci~~~~~-~~~~~~~CP~Cr~ 183 (423)
.|.||...-.+ .++ -.|...|+..|+..-+. .-.+...||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 57788764322 223 25889999999975432 2345678999974
No 212
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.97 E-value=86 Score=23.25 Aligned_cols=40 Identities=18% Similarity=0.360 Sum_probs=26.8
Q ss_pred ccccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCC
Q 039490 138 FFDCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDA 188 (423)
Q Consensus 138 ~~~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~ 188 (423)
...|.-|...+...++..-|..|+..| ..|-.|+.+|...
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C-----------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDH-----------FNCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTT-----------SBCSSSCCBCCTT
T ss_pred CCCCccCCCEecceEEEECcceeCCCC-----------CEeCCCCCccCCC
Confidence 347888888777665555666655554 3577788877654
No 213
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=21.67 E-value=22 Score=26.94 Aligned_cols=10 Identities=50% Similarity=1.245 Sum_probs=4.4
Q ss_pred HHHHhhhhhc
Q 039490 56 RARQRQRWRQ 65 (423)
Q Consensus 56 R~R~r~R~RQ 65 (423)
|+.+|+|||+
T Consensus 40 RRNRRRRWR~ 49 (72)
T 3lph_A 40 RRNRRRRWRE 49 (72)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334445543
No 214
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=21.57 E-value=31 Score=28.23 Aligned_cols=26 Identities=19% Similarity=0.427 Sum_probs=19.2
Q ss_pred ccccccccccccCcEEccCCCccchh
Q 039490 138 FFDCNICLDMARDPVLTCCGHLFCWS 163 (423)
Q Consensus 138 ~~~C~ICle~~~~pv~~~CGH~FC~~ 163 (423)
...|..|...-..-+-+.|||++|..
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCgr 49 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCGR 49 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEECT
T ss_pred CCcCccccCCCCeeeeeecCccccCC
Confidence 34699998765444568999999954
No 215
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=21.14 E-value=44 Score=24.91 Aligned_cols=44 Identities=20% Similarity=0.415 Sum_probs=27.7
Q ss_pred ccccccccccCc-EEc--cCCCccchhhHhhhhhh-cCC-CCCCCCCCc
Q 039490 140 DCNICLDMARDP-VLT--CCGHLFCWSCFYQLPYA-YRN-VKECPACNG 183 (423)
Q Consensus 140 ~C~ICle~~~~p-v~~--~CGH~FC~~Ci~~~~~~-~~~-~~~CP~Cr~ 183 (423)
.|.||...-... ++. .|...|+..|+..-+.. -.+ ...||.|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 456777543222 332 58889999999854322 234 678999974
No 216
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=20.74 E-value=35 Score=25.05 Aligned_cols=24 Identities=21% Similarity=0.539 Sum_probs=14.1
Q ss_pred CccchhhHhhhhhhcCCCCCCCCCCcccC
Q 039490 158 HLFCWSCFYQLPYAYRNVKECPACNGEVT 186 (423)
Q Consensus 158 H~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~ 186 (423)
..||..|.... ....|+.|.++|.
T Consensus 3 ~~yC~~cy~~~-----~~~~C~~C~~~I~ 26 (77)
T 2egq_A 3 SGSSGDCYKNF-----VAKKCAGCKNPIT 26 (77)
T ss_dssp SSCCTTCCCSC-----CCCCCSSSCCCCC
T ss_pred CeEchhHhchh-----hCccCcccCCccc
Confidence 45666665442 2356777776665
No 217
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.55 E-value=26 Score=26.17 Aligned_cols=10 Identities=20% Similarity=0.737 Sum_probs=4.4
Q ss_pred CCCCCCcccC
Q 039490 177 ECPACNGEVT 186 (423)
Q Consensus 177 ~CP~Cr~~i~ 186 (423)
.|..|.++|.
T Consensus 17 ~C~~C~~~I~ 26 (82)
T 2ehe_A 17 TCAECQQLIG 26 (82)
T ss_dssp BCTTTCCBCC
T ss_pred cCccCCCccc
Confidence 3444444443
No 218
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.55 E-value=61 Score=24.00 Aligned_cols=39 Identities=18% Similarity=0.445 Sum_probs=25.5
Q ss_pred ccccccccccCcEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCCCC
Q 039490 140 DCNICLDMARDPVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTDAS 189 (423)
Q Consensus 140 ~C~ICle~~~~pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~~~ 189 (423)
.|..|...+...++..-|..|+..| ..|-.|++++....
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~wH~~C-----------F~C~~C~~~L~~~~ 55 (81)
T 1v6g_A 17 RCFSCDQFIEGEVVSALGKTYHPDC-----------FVCAVCRLPFPPGD 55 (81)
T ss_dssp BCTTTCCBCCSCCEEETTEEECTTT-----------SSCSSSCCCCCSSS
T ss_pred cCccccCEeccceEEECCceeCccC-----------CccccCCCCCCCCC
Confidence 6888888776555555565555554 35777888776443
No 219
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=20.49 E-value=24 Score=24.57 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=24.6
Q ss_pred cccccccCcEEc---cCCCccchhhHhhhhhhcCCCCCCCCCCc
Q 039490 143 ICLDMARDPVLT---CCGHLFCWSCFYQLPYAYRNVKECPACNG 183 (423)
Q Consensus 143 ICle~~~~pv~~---~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~ 183 (423)
||........++ .|..-|+..|+.--.........||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 576655443333 47778888887643222345677888854
No 220
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.26 E-value=73 Score=22.91 Aligned_cols=37 Identities=16% Similarity=0.470 Sum_probs=21.7
Q ss_pred ccccccccccC----cEEccCCCccchhhHhhhhhhcCCCCCCCCCCcccCC
Q 039490 140 DCNICLDMARD----PVLTCCGHLFCWSCFYQLPYAYRNVKECPACNGEVTD 187 (423)
Q Consensus 140 ~C~ICle~~~~----pv~~~CGH~FC~~Ci~~~~~~~~~~~~CP~Cr~~i~~ 187 (423)
.|.-|...+.. .++..-|..|+..|+ .|-.|+.++..
T Consensus 7 ~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF-----------~C~~C~~~L~~ 47 (72)
T 1x4l_A 7 GCAGCTNPISGLGGTKYISFEERQWHNDCF-----------NCKKCSLSLVG 47 (72)
T ss_dssp SBTTTTBCCCCSSSCSCEECSSCEECTTTC-----------BCSSSCCBCTT
T ss_pred CCcCCCccccCCCCcceEEECCcccCcccC-----------EeccCCCcCCC
Confidence 67777776664 444445555555542 46667666653
Done!