BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039491
(1379 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1
Length = 1213
Score = 814 bits (2102), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/1030 (44%), Positives = 630/1030 (61%), Gaps = 85/1030 (8%)
Query: 367 QQQKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSA 426
+Q A VV S A + F +LVP++ALDFPFELDNFQKEAIY+LE GDSVFVAAHTSA
Sbjct: 249 KQPDYAHVVDSS--APIENFQQLVPEMALDFPFELDNFQKEAIYHLEMGDSVFVAAHTSA 306
Query: 427 GKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVSLRPEASCL 485
GKTVVAEYA ALA KH T+A+YT+PIK +SNQK+RDF KF DVG+LTGDV + PE SCL
Sbjct: 307 GKTVVAEYAIALAQKHMTKAIYTSPIKALSNQKFRDFKHKFEDVGILTGDVQVNPEGSCL 366
Query: 486 IMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSAT 545
+MTTEILRSMLYRGAD+IRD+E+VIFDEVHYVND+ERGVVWEEVIIMLP H+ ++LLSAT
Sbjct: 367 LMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDLERGVVWEEVIIMLPPHVTLILLSAT 426
Query: 546 VPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEA-FIPQGWKAAK 604
VPNT EFA W+GRTK+K I V T KRPVPLEH L+ +K+ + F+ G+K+A
Sbjct: 427 VPNTKEFASWVGRTKKKNIYVISTLKRPVPLEHYLWVKQNMFKIVDQHGRFLMDGYKSAN 486
Query: 605 DAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWG 664
DA K+ + + + A G Q RG
Sbjct: 487 DALKKPDKPVIAKDNKNSARGRGAARGRGVQTNMMRGRGSAK-----------------S 529
Query: 665 LRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCD 724
+ R + + W+ LI L K++LLPV++F FSK C++ D ++ DL + EKSE+ V +
Sbjct: 530 VERRDANTWVHLIGHLHKQNLLPVIVFVFSKKRCEEYVDTLTNRDLNNHQEKSEVHVVIE 589
Query: 725 KAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETF 784
KA +RLK DR LPQI R++ +L RG+A+HH GLLPI+KE++E+LF RG+VKVLF+TETF
Sbjct: 590 KAVARLKKEDRLLPQIGRMREMLSRGLAVHHGGLLPIIKEIVEILFQRGLVKVLFATETF 649
Query: 785 AMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPG 844
AMGVN PA++VVF +K DGR FR LLPGEYTQ +GRAGRRGLD GTV++L R E+P
Sbjct: 650 AMGVNMPAKSVVFSGTQKHDGRNFRDLLPGEYTQCSGRAGRRGLDVTGTVIILSRSELPD 709
Query: 845 ESDLKHIIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHSQKKLPEQQQL 904
+ L+H+I+G +++L SQFRLTY MIL+LLRVE L++EDM+KRSF+E +Q +P+ ++
Sbjct: 710 TASLRHMIMGPSSKLISQFRLTYNMILNLLRVETLRIEDMIKRSFSENVNQTLVPQHEEK 769
Query: 905 LM---RKLAQPPKTI---------ECIKGEPAIEEYY-DMYYEAEKYNNQITEAFMQSAH 951
+ KL+ K + C+ + +EY M++ A IT A +
Sbjct: 770 IKSFEEKLSALKKEMSDVDLKEIKSCLLSSESFKEYTKKMHFRA------ITTA---NGK 820
Query: 952 QFLMPGRVLFVKS---QTGQDHLLGAVVKAPSANNKEYIVMLLKPDLPSASETSLDKKSG 1008
+ GRV+ + LLG ++ +A++ V L P + L +
Sbjct: 821 RIFKDGRVIVFQQLDFTRTVGVLLGTSIRT-NASDCTLEVAYLNPQNNLKRPSDLLAFAD 879
Query: 1009 DFSEGYFVIPKSKRGLEEEYCGSVSHRKGSGVINIKLPYHGAAAGVSYEVRGIDKKELLC 1068
F++ Y + S++ G+IN+ GI++
Sbjct: 880 AFNDVY-----------DNAIFDESNQFKYGLINLS---------------GIER----- 908
Query: 1069 ICNCKIKIDQVGLLEDVSSAAFSKTVQQLLVLKSDEKKYPQAL-DPVKDLKLKDMNLVEA 1127
+CN ++ID G + D AF K +Q + KK+ L + V K++D EA
Sbjct: 909 VCNTILRIDSGG-IRDRRGGAFRKLSEQFASI----KKFSDLLFEEVNWSKVRDFEFCEA 963
Query: 1128 YYKWAGLLRKMAANKCHGCIKLEEHMKLTKENKRHKDEVNTLKFQMSDEALQQMPDFQGR 1187
+ K L K++ N H L + + ++ L +SD+ L+ +PD++ R
Sbjct: 964 FEKRNFLQNKLSGNPIISTPNFLTHFALAYQEYELESNIDNLSSYISDQNLELLPDYEQR 1023
Query: 1188 IDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEAVAIMSAFVF 1247
I VL+E+G IDA+ V +KGRVACE+NS EL+ TE + EN L D EE +A++SAFVF
Sbjct: 1024 IKVLQELGYIDAERTVLLKGRVACEINSTSELVLTELILENSLADFSCEETIALLSAFVF 1083
Query: 1248 QQRNTSEPSLTPKLSVAKERLYNTAIRLGELQAHFKV-QIDPEEYARDNLKFGLVEVVYE 1306
++ EP+++P L KE + + A ++ ++Q H++V + +FGL+EV YE
Sbjct: 1084 DEKTEVEPTISPHLQKGKEMILSVAEKVNQIQEHYQVLYFNEGNDFESQPRFGLMEVCYE 1143
Query: 1307 WAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIMGNSALYKKMETASNAIKR 1366
WA+G F I +LTDV EG IVRTI+RLDE RE R AA ++G+S++Y KME N I+R
Sbjct: 1144 WARGMSFNRITDLTDVLEGSIVRTIIRLDEVLRECRGAARVVGDSSMYTKMEECQNLIRR 1203
Query: 1367 DIVFAASLYI 1376
+IVF SLY+
Sbjct: 1204 NIVFCPSLYM 1213
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3
Length = 1246
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/1055 (43%), Positives = 631/1055 (59%), Gaps = 95/1055 (9%)
Query: 348 EILSVKSGGTTSILDDGGGQQQKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKE 407
E L +K T + +E W + + F+ L+P A + FE D FQK+
Sbjct: 258 EDLVLKEASTAVSTPEAPEPPSQEQWAIPVDATSPVGDFYRLIPQPAFQWAFEPDVFQKQ 317
Query: 408 AIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF 467
AI +LE DSVFVAAHTSAGKTVVAEYA ALA KH TR +YT+PIK +SNQK+RDF F
Sbjct: 318 AILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTF 377
Query: 468 -DVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVW 526
DVGLLTGDV L PEASCLIMTTEILRSMLY G+D+IRD+EWVIFDEVHY+ND+ERGVVW
Sbjct: 378 GDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFDEVHYINDVERGVVW 437
Query: 527 EEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYS--- 583
EEV+IMLP H++I+LLSATVPN +EFADWIGR K+++I V T RPVPLEH L+
Sbjct: 438 EEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSS 497
Query: 584 ---GEFYKVCENE-AFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREH 639
GE + + ++ AF +G+ AA +A K R K
Sbjct: 498 KTQGELFLLLDSRGAFHTKGYYAAVEAKKE-----------------------RMSKHAQ 534
Query: 640 PNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCD 699
KQ H GG + G ++L+L+ L ++ LPVV+F FS+ CD
Sbjct: 535 TFGAKQPTHQ-------GGPAQDRG-------VYLSLLASLRTRAQLPVVVFTFSRGRCD 580
Query: 700 KLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLL 759
+ A G++ +DLT+SSEKSEI +F + +RL+GSDR LPQ++ + LL RG+ +HH+G+L
Sbjct: 581 EQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGIL 640
Query: 760 PIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQM 819
PI+KE++EMLF RG+VKVLF+TETFAMGVN PARTVVFD++RK DG FR LLPGEY QM
Sbjct: 641 PILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQM 700
Query: 820 AGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQFRLTYIMILHLLRVEEL 879
AGRAGRRGLD GTV++LC+ +P +DL +++G ++L+SQFRLTY MIL+LLRV+ L
Sbjct: 701 AGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDAL 760
Query: 880 KVEDMLKRSFAEFHSQKKLPEQQQLL------MRKLAQPPKTIECIKGEPAIEEYYDMYY 933
+VEDM+KRSF+EF S+K +Q L + L +P T + + + EYY
Sbjct: 761 RVEDMMKRSFSEFPSRKDSKAHEQALAELTKRLGALEEPDMTGQLVD----LPEYYSWGE 816
Query: 934 EAEKYNNQITEAFMQSAHQF--LMPGRVLFVKSQTGQDHLLGAVVKAPSANNKEYIVMLL 991
E + + I M+S + L GRV+ VK+Q + LG +++ S + L+
Sbjct: 817 ELTETQHMIQRRIMESVNGLKSLSAGRVVVVKNQE-HHNALGVILQVSSNSTSRVFTTLV 875
Query: 992 KPDLPSASETSLDKKSGDFSEGYFVIPKSKRG----LEEEYCGSVSHRKGSGVINIKLPY 1047
D P S+ D+ Y P G L E C V+ ++
Sbjct: 876 LCDKP-LSQDPQDRGPATAEVPY---PDDLVGFKLFLPEGPCDHT-------VVKLQ--- 921
Query: 1048 HGAAAGVSYEVRGIDKKELLCICNCKIKIDQVGLLEDVSSAAFSKTVQQLLVLKSDEKKY 1107
G A ++ +V ++ +++L + K Q +D AA + VQ+LL L
Sbjct: 922 PGDMAAITTKVLRVNGEKILEDFS---KRQQPKFKKDPPLAAVTTAVQELLRLAQAHPAG 978
Query: 1108 PQALDPVKDLKLKDMNLVEAYYKWAGLLRKMAANKC-HG------CIKLEEHMKLTKENK 1160
P LDPV DL+LKDM++VE + L + +C H +KL E M++ KE +
Sbjct: 979 PPTLDPVNDLQLKDMSVVEGGLRARKLEELIQGAQCVHSPRFPAQYLKLRERMQIQKEME 1038
Query: 1161 RHKDEVNTLKFQMSDEALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELI 1220
R L+F +SD++L +P++ R++VL+ +G +D V++ GRVAC M+S EL+
Sbjct: 1039 R-------LRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRVACAMSS-HELL 1090
Query: 1221 CTECLFENQLDDLEPEEAVAIMSAFVFQQRNTSEPSLTPKLSVAKERLYNTAIRLGELQA 1280
TE +F+N L L PEE A++S V Q + L L ER+ A R+GE+Q
Sbjct: 1091 LTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNTLKQGIERVRAVAKRIGEVQV 1150
Query: 1281 HFKVQIDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCRE 1340
+ EE+ + L FGLVEVVYEWA+G PF+++ L+ PEGL+VR I RL E CR
Sbjct: 1151 ACGLNQTVEEFVGE-LNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQRLAEMCRS 1209
Query: 1341 FRNAAAIMGNSALYKKMETASNAIKRDIVFAASLY 1375
R AA ++G L KMETA+ ++RDIVFAASLY
Sbjct: 1210 LRGAARLVGEPVLGAKMETAATLLRRDIVFAASLY 1244
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SKI2 PE=1 SV=2
Length = 1287
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/1034 (41%), Positives = 609/1034 (58%), Gaps = 72/1034 (6%)
Query: 370 KEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKT 429
K+ W + F EL+P+ A +PFELD FQKEA+Y+LE GDSVFVAAHTSAGKT
Sbjct: 299 KKEWAHVVDLNHKIENFDELIPNPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKT 358
Query: 430 VVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFD---VGLLTGDVSLRPEASCLI 486
VVAEYA A+A ++ T+ +YT+PIK +SNQK+RDF FD +GL+TGDV + P+A+CLI
Sbjct: 359 VVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCLI 418
Query: 487 MTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATV 546
MTTEILRSMLYRGAD+IRD+E+VIFDEVHYVND +RGVVWEEVIIMLP+H+ +LLSATV
Sbjct: 419 MTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATV 478
Query: 547 PNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVC-ENEAFIPQGWKAAKD 605
PNT EFA+WIGRTKQK I V T KRPVPLE ++ E V +N F+ ++ K+
Sbjct: 479 PNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKE 538
Query: 606 AYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGL 665
++ A T + G S+ R G R RG + +S G N GGS+ +
Sbjct: 539 ILNGESAKGAPSKTDNGRGGSTAR-GGRGGSNTRDGRGGRG-NSTRGGANRGGSRGAGAI 596
Query: 666 RRSEVSI----------WLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSE 715
++ W ++N L K+ LLP+V+F FSK C++ AD + GI+ ++ E
Sbjct: 597 GSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKE 656
Query: 716 KSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVV 775
KS+I +F +K+ +RLK DR+LPQI++ +SLL RGIA+HH GLLPIVKE+IE+LF +G +
Sbjct: 657 KSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFI 716
Query: 776 KVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVV 835
KVLF+TETFAMG+N P RTV+F ++RK DG R+L PGE+TQMAGRAGRRGLD GTV+
Sbjct: 717 KVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVI 776
Query: 836 VLCRDEIPGESDLKHIIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHSQ 895
V+ + + K + +G TRL+SQFRLTY MIL+LLR+E L+VE+M+K SF+E +
Sbjct: 777 VMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKE 836
Query: 896 KKLPEQQQLLMRKLAQPPKTIE---CIKGEPAIEEYYDMYYEAEKYNNQITEAFMQSAH- 951
PE ++ + + L + +TIE C + IE++ ++ ++ + + ++S
Sbjct: 837 TLQPEHEKQI-KVLQEELQTIEYKSCEICDNDIEKFLELMLAYKEATVNLMQEMVKSPSI 895
Query: 952 -QFLMPGRVLFVKSQTGQDHL-LGAVVKAPSANNKEYIVMLLKP-DLPSASETSLDKKSG 1008
L GR+ V + D L LG V K + I+ KP LP+ L
Sbjct: 896 LHILKEGRL--VAFRDPNDCLKLGFVFKVSLKDAVCVIMTFTKPYKLPNGEPNHLI---- 949
Query: 1009 DFSEGYFVIPKSKRGLEEEYCGSVSHRKGSGVINIKLPYHGAAAGVSYEVRGIDKKELLC 1068
YF PK+ +R+ + K ++ V+ + I K++
Sbjct: 950 -----YF--PKAD-----------GYRRRNFPKFQKTDFYMEEVPVT-AIEVITKRKFAA 990
Query: 1069 ICNCKIKIDQVGLLE---DVSSAAFSKTVQQLLVLKSDEKKYPQALDPVKDLKLKDMNLV 1125
IK D L E + ++ KT+++ + ++ K Q L L N+
Sbjct: 991 PLGKVIKKDVAALNEFNAETNNILDGKTLKEAINIEKQGLKIHQIL-------LDRTNIR 1043
Query: 1126 EAYYKWAGLLRKMAANKCHGCIKLEEHMKLTKENKRHKDEVNTLKFQMSDEALQQMPDFQ 1185
+ +K K C L +H+ + K ++ L MSD+ L +PD++
Sbjct: 1044 DEIFKL----------KSIKCPNLSQHIVPKFKAHVIKKKIEELYHLMSDQNLSLLPDYE 1093
Query: 1186 GRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEAVAIMSAF 1245
R+ VLK+ ID + V +KGRVACE+NSG EL+ TE + +N L EPEE VA++S F
Sbjct: 1094 KRLAVLKDTEFIDQNHNVLLKGRVACEINSGYELVLTELILDNFLGSFEPEEIVALLSVF 1153
Query: 1246 VFQQRNTSE--PSLTPKLSVAKERLYNTAIR-LGELQAHFKVQIDPEEYARDNLKFGLVE 1302
V++ + E P +TP+L+ K+R+ + L H E D +F ++
Sbjct: 1154 VYEGKTREEEPPIVTPRLAKGKQRIEEIYKKMLCVFNTHQIPLTQDEAEFLDRKRFAMMN 1213
Query: 1303 VVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIMGNSALYKKMETASN 1362
VVYEWA+G F +I E++ EG +VR I LDE CRE + A+ I+GNS L+ KM A
Sbjct: 1214 VVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDEICREVKTASIIIGNSTLHMKMSRAQE 1273
Query: 1363 AIKRDIVFAASLYI 1376
IKRDIVFAASLY+
Sbjct: 1274 LIKRDIVFAASLYL 1287
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1
Length = 1073
Score = 603 bits (1554), Expect = e-171, Method: Compositional matrix adjust.
Identities = 370/1006 (36%), Positives = 578/1006 (57%), Gaps = 98/1006 (9%)
Query: 394 ALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIK 453
A +PF LD FQ AI ++ G+SV V+AHTSAGKTVVAEYA A + K+ R +YT+PIK
Sbjct: 143 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIK 202
Query: 454 TISNQKYRDFSGKF-DVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFD 512
+SNQKYR+ +F DVGL+TGD+++ P+A CL+MTTEILRSMLYRG++++R++ WVIFD
Sbjct: 203 ALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFD 262
Query: 513 EVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKR 572
EVHY+ D ERGVVWEE II+LP + V LSAT+PN +EFA+WI + + + T R
Sbjct: 263 EVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR 322
Query: 573 PVPLEHCLY--YSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRD 630
P PL+H L+ + Y V + K ++ +N A + + G
Sbjct: 323 PTPLQHYLFPAHGDGIYLVVDE-----------KSTFREENFQKAMASISNQIGDDPNST 371
Query: 631 GARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVI 690
+R +K G GGS G + ++ ++ + KK PV++
Sbjct: 372 DSRGKK---------------GQTYKGGSAK--GDAKGDI---YKIVKMIWKKKYNPVIV 411
Query: 691 FCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRG 750
F FSK C++LA MS +D S EK + + A + L +DR LPQI + LLRRG
Sbjct: 412 FSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRG 471
Query: 751 IAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQ 810
I IHH+GLLPI+KEVIE+LF G +KVLF+TETF++G+N PA+TVVF ++RK+DG++FR
Sbjct: 472 IGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRW 531
Query: 811 LLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQFRLTYIMI 870
+ GEY QM+GRAGRRGLD G V+++ DE K ++ G A RL+S F L Y MI
Sbjct: 532 VSGGEYIQMSGRAGRRGLDDRGIVIMMI-DEKMEPQVAKGMVKGQADRLDSAFHLGYNMI 590
Query: 871 LHLLRVEELKVEDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTIECI--KGEPAIEEY 928
L+L+RVE + E ML+ SF +F + +P ++ +KLA+ K + I + E ++EY
Sbjct: 591 LNLMRVEGISPEFMLEHSFFQFQNVISVP----VMEKKLAELKKDFDGIEVEDEENVKEY 646
Query: 929 YDMYYEAEKYNNQITEAFMQSAH--QFLMPGRVLFVKSQTGQDHLLGAVV--------KA 978
+++ + Y + + A+ FL PGR++ + ++ GAVV +
Sbjct: 647 HEIEQAIKGYREDVRQVVTHPANALSFLQPGRLVEISVNGKDNYGWGAVVDFAKRINKRN 706
Query: 979 PSA---NNKEYIVMLLKPDLPSASETSLDKKSGDFSEGYFVIPKSKRGLEEEYCGSVSHR 1035
PSA +++ YIV ++ + S +L K +P+ R EE +
Sbjct: 707 PSAVYTDHESYIVNVVVNTMYIDSPVNLLKPFNP------TLPEGIRPAEE------GEK 754
Query: 1036 KGSGVINIKLPYHGAAAGVSYEVRGIDKKELLCICNCKIKIDQVGLLEDVSSAAFSKTVQ 1095
VI I L + I N ++ + + D+ ++ +TV
Sbjct: 755 SICAVIPITL------------------DSIKSIGNLRLYMPK-----DIRASGQKETVG 791
Query: 1096 QLLVLKSDEKKYPQA---LDPVKDLKLKDMNLVEAYYKWAGLLRKMAANKCHGCIKLEE- 1151
+ L+ +++P LDPVK++K++D + ++ K L K+++N ++LEE
Sbjct: 792 K--SLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEEL 849
Query: 1152 HMKLTKENKRHKDEVNTLKFQMSD-EALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVA 1210
+ K ++++ H+D + LK ++S+ +A+ Q+ D + R VL+ +G + ++++KGRVA
Sbjct: 850 YGKYSRKHDLHED-MKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVA 908
Query: 1211 CEMNSGEELICTECLFENQLDDLEPEEAVAIMSAFVFQQRNTSEPSLTPKLSVAKERLYN 1270
CE++SG+EL+ TE +F ++L+PE+A A++S F FQ+R P L P+L+ + +
Sbjct: 909 CEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMRE 968
Query: 1271 TAIRLGELQAHFKVQIDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRT 1330
A ++ ++ K+++ ++Y ++ + L+EVVYEW +G F IC++TDV EG ++R
Sbjct: 969 IAAKIAKIMKDSKIEVVEKDYV-ESFRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRM 1027
Query: 1331 IVRLDETCREFRNAAAIMGNSALYKKMETASNAIKRDIVFAASLYI 1376
RL+E +E + A +GNS+L +KME I RDIV A SLY+
Sbjct: 1028 FKRLEELVKELVDVANTIGNSSLKEKMEAVLKLIHRDIVSAGSLYL 1073
>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2
PE=1 SV=3
Length = 1042
Score = 592 bits (1526), Expect = e-168, Method: Compositional matrix adjust.
Identities = 369/998 (36%), Positives = 543/998 (54%), Gaps = 103/998 (10%)
Query: 394 ALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIK 453
A ++PF LD FQ+EAI ++N SV V+AHTSAGKTV AEYA ALA + R ++T+PIK
Sbjct: 133 AKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK 192
Query: 454 TISNQKYRDFSGKF-DVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFD 512
+SNQKYR+ +F DVGL+TGDV++ P ASCL+MTTEILRSMLYRG++++R++ WVIFD
Sbjct: 193 ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFD 252
Query: 513 EVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKR 572
E+HY+ D ERGVVWEE II+LP +++ V LSAT+PN +FA+WI ++ V T R
Sbjct: 253 EIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYR 312
Query: 573 PVPLEHCLYYSGE---FYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPR 629
P PL+H ++ +G V EN F + A + A A G G
Sbjct: 313 PTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLR----DAGDLAKGDQKG----- 363
Query: 630 DGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVV 689
R+ +G N +V + + +++ PV+
Sbjct: 364 -------RKGGTKGPSNVFKIVKM--------------------------IMERNFQPVI 390
Query: 690 IFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRR 749
IF FSK C+ A M+ +D + EK + A L D+ LPQ+ V LL+R
Sbjct: 391 IFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLLKR 450
Query: 750 GIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFR 809
GI IHH GLLPI+KE IE+LF G++K LF+TETFAMG+N PARTV+F N RKFDG++FR
Sbjct: 451 GIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFR 510
Query: 810 QLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQFRLTYIM 869
+ GEY QM+GRAGRRG+D G +V+L DE + K ++ GSA L S F LTY M
Sbjct: 511 WISSGEYIQMSGRAGRRGMDDRG-IVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNM 569
Query: 870 ILHLLRVEELKVEDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTIECIKGEPAIEEYY 929
+L+LLRVEE+ E ML++SF +F + +P + + Q K + I E ++ YY
Sbjct: 570 VLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKNSEEQYNKIV--IPNEESVVIYY 627
Query: 930 DMYYEAEKYNNQITEAFMQSAH--QFLMPGRVLFVKSQTGQDHLLGAVVKAPSANNKEYI 987
+ + K +I E + + FL PGR++ VK++ G D G VV +N
Sbjct: 628 KIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNE-GDDFGWGVVVNFSKKSN---- 682
Query: 988 VMLLKPDLPSASETSLDKKSGDFSEGYFV---IPKSKRGLEEEYCGSVSHRKGS--GVIN 1042
+KP+ SG+ Y V + SK L+ + K G +
Sbjct: 683 ---VKPN------------SGELDPLYVVEVLLRCSKESLKNSATEAAKPAKPDEKGEMQ 727
Query: 1043 IKLPYHGAAAGVSYEVRGIDKKELLCICNCKIKIDQVGLLEDVSSAAFSKTVQQLLVLKS 1102
+ +P VR K+L + N + K++Q++
Sbjct: 728 V-VPVLVHLLSAISSVRLYIPKDLRPVDN---------------RQSVLKSIQEV----- 766
Query: 1103 DEKKYPQA---LDPVKDLKLKDMNLVEAYYKWAGLLRKMAANKCHGCIKLEEHMKLTKEN 1159
+K++P LDP+ D+ ++D L + K +M ++ H LE L ++
Sbjct: 767 -QKRFPDGIPLLDPIDDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKK 825
Query: 1160 KRHKDEVNTLKFQMSD-EALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEE 1218
+ ++ + K ++ + QM + + R VL+ +G + V+++KGRVACE++S +E
Sbjct: 826 AQIAIDIKSAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADE 885
Query: 1219 LICTECLFENQLDDLEPEEAVAIMSAFVFQQRNTSEPSLTPKLSVAKERLYNTAIRLGEL 1278
L+ TE +F +DL E+A A++S FVFQ+ ++ P LT +L+ ++ A R+ ++
Sbjct: 886 LLLTEMMFNGLFNDLSAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKV 945
Query: 1279 QAHFKVQIDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETC 1338
A K++ID E Y + K L++VVY WA G FA IC++TDV EG I+R + RL+E
Sbjct: 946 SAEAKLEIDEETYL-SSFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELL 1004
Query: 1339 REFRNAAAIMGNSALYKKMETASNAIKRDIVFAASLYI 1376
R+ AA +GN+ L K IKRDIVFAASLY+
Sbjct: 1005 RQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL 1042
>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2
PE=2 SV=1
Length = 1040
Score = 588 bits (1517), Expect = e-167, Method: Compositional matrix adjust.
Identities = 364/998 (36%), Positives = 537/998 (53%), Gaps = 103/998 (10%)
Query: 394 ALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIK 453
A ++PF LD FQ+EAI ++N SV V+AHTSAGKTV AEYA ALA + R ++T+PIK
Sbjct: 131 AKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK 190
Query: 454 TISNQKYRDFSGKF-DVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFD 512
+SNQKYR+ +F DVGL+TGDV++ P ASCL+MTTEILRSMLYRG++++R++ WVIFD
Sbjct: 191 ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFD 250
Query: 513 EVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKR 572
E+HY+ D ERGVVWEE II+LP +++ V LSAT+PN +FA+WI ++ V T R
Sbjct: 251 EIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYR 310
Query: 573 PVPLEHCLYYSGE---FYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPR 629
P PL+H ++ +G V EN F + A + A G G P
Sbjct: 311 PTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGP- 369
Query: 630 DGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVV 689
S ++ + +++ PV+
Sbjct: 370 -----------------------------------------SNVFKIVKMIMERNFQPVI 388
Query: 690 IFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRR 749
IF FSK C+ A M+ +D + EK + + A L D+ LPQ+ V LL+R
Sbjct: 389 IFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLPQVEHVLPLLKR 448
Query: 750 GIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFR 809
GI IHH GLLPI+KE IE+LF G++K LF+TETFAMG+N PARTV+F N RK+DG++FR
Sbjct: 449 GIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKYDGKDFR 508
Query: 810 QLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQFRLTYIM 869
+ GEY QM+GRAGRRG+D G +V+L DE + K ++ GSA L S F LTY M
Sbjct: 509 WISSGEYIQMSGRAGRRGMDDRG-IVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNM 567
Query: 870 ILHLLRVEELKVEDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTIECIKGEPAIEEYY 929
+L+LLRVEE+ E ML++SF +F + +P + + Q K + I E + YY
Sbjct: 568 VLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKNSEEQYNKIV--IPNEENVVIYY 625
Query: 930 DMYYEAEKYNNQITEAFMQSAH--QFLMPGRVLFVKSQTGQDHLLGAVVKAPSANNKEYI 987
+ + K +I E + + FL PGR++ VK++ G D G VV +N
Sbjct: 626 KIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNE-GDDFGWGVVVNFSKKSN---- 680
Query: 988 VMLLKPDLPSASETSLDKKSGDFSEGYFV---IPKSKRGLEEEYCGSVSHRKGS--GVIN 1042
+KP+ SG+ Y V + SK L+ + K G +
Sbjct: 681 ---VKPN------------SGELDPLYVVEVLLRCSKESLKNSATEAAKPAKPDEKGEMQ 725
Query: 1043 IKLPYHGAAAGVSYEVRGIDKKELLCICNCKIKIDQVGLLEDVSSAAFSKTVQQLLVLKS 1102
+ +P VR K+L + N + K++Q++
Sbjct: 726 V-VPVLVHLLSAISTVRLYIPKDLRPVDN---------------RQSVLKSIQEV----- 764
Query: 1103 DEKKYPQA---LDPVKDLKLKDMNLVEAYYKWAGLLRKMAANKCHGCIKLEEHMKLTKEN 1159
++++P LDP+ D+ ++D L + K +M ++ H LE L +
Sbjct: 765 -QRRFPDGVPLLDPIDDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCERK 823
Query: 1160 KRHKDEVNTLKFQMSD-EALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEE 1218
+ ++ + K ++ + QM + + R VL+ +G + V+++KGRVACE++S +E
Sbjct: 824 AQIALDIKSAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADE 883
Query: 1219 LICTECLFENQLDDLEPEEAVAIMSAFVFQQRNTSEPSLTPKLSVAKERLYNTAIRLGEL 1278
L+ TE +F +DL E+A A++S FVFQ+ ++ P LT +L+ ++ A R+ ++
Sbjct: 884 LLLTEMMFNGLFNDLSSEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKV 943
Query: 1279 QAHFKVQIDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETC 1338
A K++ID E Y + K L++VVY WA G FA IC++TDV EG I+R + RL+E
Sbjct: 944 SAEAKLEIDEETYL-SSFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELL 1002
Query: 1339 REFRNAAAIMGNSALYKKMETASNAIKRDIVFAASLYI 1376
R+ AA +GN+ L K IKRDIVFAASLY+
Sbjct: 1003 RQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL 1040
>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mtr4 PE=1 SV=1
Length = 1117
Score = 581 bits (1498), Expect = e-164, Method: Compositional matrix adjust.
Identities = 367/1004 (36%), Positives = 550/1004 (54%), Gaps = 99/1004 (9%)
Query: 394 ALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIK 453
A +PF LD FQ +I +E +SV V+AHTSAGKTVVAEYA A + + R +YT+PIK
Sbjct: 192 ARTYPFTLDPFQAVSIACIERQESVLVSAHTSAGKTVVAEYAVAQSLRDKQRVIYTSPIK 251
Query: 454 TISNQKYRDFSGKF-DVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFD 512
+SNQKYR+ +F DVGL+TGDV++ P+A+CL+MTTEILRSMLYRG++++R++ WVIFD
Sbjct: 252 ALSNQKYRELLAEFGDVGLMTGDVTINPDATCLVMTTEILRSMLYRGSEVMREVAWVIFD 311
Query: 513 EVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKR 572
E+HY+ D ERGVVWEE II+LP + V LSAT+PN ++FA+WI + ++ V T R
Sbjct: 312 EIHYMRDKERGVVWEETIILLPDKSHFVFLSATIPNAMQFAEWITKIHRQPCHVVYTDFR 371
Query: 573 PVPLEHCLYYSGE--FYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRD 630
P PL+H L+ SG + V + K ++ +N A A G
Sbjct: 372 PTPLQHYLFPSGSDGIHLVVDE-----------KSNFREENFQRAMSALMEKQG------ 414
Query: 631 GARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVI 690
+ + + K + S ++ + K+ PV++
Sbjct: 415 ---------------DDPAAMATKGNAKKGKTGKGGVKGPSDIYKIVKMIMVKNYNPVIV 459
Query: 691 FCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRG 750
F FSK C+ LA MS +D+ +E+ + + A ++L DR LPQI + LLRRG
Sbjct: 460 FSFSKRECEALALQMSKLDMNDQTERDLVTTIFNNAVNQLSEKDRELPQIEHILPLLRRG 519
Query: 751 IAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQ 810
I IHH+GLLPI+KEVIE+LF G++KVLF+TETF++G+N PA+TVVF N+RKFDG+ FR
Sbjct: 520 IGIHHSGLLPILKEVIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTNVRKFDGKTFRW 579
Query: 811 LLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQFRLTYIMI 870
+ GEY QM+GRAGRRGLD G +V+L DE K ++ G A RL+S F L+Y MI
Sbjct: 580 ISGGEYIQMSGRAGRRGLDDRG-IVILMIDEKMDPPVAKSMLKGEADRLDSAFHLSYNMI 638
Query: 871 LHLLRVEELKVEDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTIE--CIKGEPAIEEY 928
L+LLRVE + E ML+R F +F + ++P+ L KL + + + I E +EEY
Sbjct: 639 LNLLRVEGISPEFMLERCFFQFQNSLEVPK----LEAKLEESQQHYDSFTILDERPLEEY 694
Query: 929 YDMYYEAEKYNNQITEAFMQSAH--QFLMPGRVLFVKSQTGQDHLLGAVVKA-----PSA 981
+ + + E+Y + FL GR++ VK +D G VV P
Sbjct: 695 HTLKTQLERYRTDVRTVVNHPNFCLSFLQGGRLVRVKV-GNEDFDWGVVVNVSKRPLPKG 753
Query: 982 NNKEYI---VMLLKPDLPSASETS-LDKKSGDFSEGYFVIPKSKRGLEEEYCGSVSHRKG 1037
+ EY+ ++ + AS+T L +SG E + + K G E +S G
Sbjct: 754 QSNEYLPQESYIVHTLVMVASDTGPLRIRSGHLPEVHPPAAEDK-GKFEVVPFLLSSLDG 812
Query: 1038 SGVINIKLPYHGAAAGVSYEVRGIDKKELLCICNCKIKIDQVGLLEDVSSAAFSKTVQQL 1097
I + LP D+ S TV +
Sbjct: 813 IAHIRVFLP------------------------------------NDLKSQGQKLTVGK- 835
Query: 1098 LVLKSDEKKYPQA---LDPVKDLKLKDMNLVEAYYKWAGLLRKMAANKCHGCIKLEEHMK 1154
L ++++P+ LDPV+++ +K+ ++ K L ++ +N H +LEE
Sbjct: 836 -ALSEVKRRFPEGITLLDPVENMNIKEPTFIKLMKKVNILESRLLSNPLHNFSELEEKYA 894
Query: 1155 LTKENKRHKDEVNTLKFQMSD-EALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEM 1213
+EV LK ++S ++ Q+ + R VL+ +G +D V+++KGRVACE+
Sbjct: 895 EYLRKLALLEEVKDLKKKLSKARSIMQLDELNSRKRVLRRLGFTTSDDVIEVKGRVACEI 954
Query: 1214 NSGEELICTECLFENQLDDLEPEEAVAIMSAFVFQQRNTSEPS-LTPKLSVAKERLYNTA 1272
+SG+ L+ TE +F +DL PE+ A++S VFQ+++ E + +L+ + L A
Sbjct: 955 SSGDGLLLTELIFNGMFNDLTPEQCAALLSCLVFQEKSEVENQRMKEELAGPLKILQEMA 1014
Query: 1273 IRLGELQAHFKVQIDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIV 1332
R+ ++ K +++ EEY ++ K L+EVVY WA G FA IC++TDV EG ++R
Sbjct: 1015 RRIAKVSKESKQELNEEEYV-NSFKPSLMEVVYAWAHGASFAQICKMTDVYEGSLIRMFR 1073
Query: 1333 RLDETCREFRNAAAIMGNSALYKKMETASNAIKRDIVFAASLYI 1376
RL+E R+ +AA ++GN++L +KME I RDIVF+ASLY+
Sbjct: 1074 RLEELIRQMVDAAKVIGNTSLQQKMEDTIACIHRDIVFSASLYL 1117
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3
SV=1
Length = 1026
Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust.
Identities = 238/573 (41%), Positives = 337/573 (58%), Gaps = 48/573 (8%)
Query: 397 FPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTIS 456
+PF+LD FQK+AI ++N SV V+AHTSAGKTVVA YA A + R +YT+PIK +S
Sbjct: 122 YPFQLDAFQKQAILCIDNNQSVLVSAHTSAGKTVVATYAIAKCLREKQRVIYTSPIKALS 181
Query: 457 NQKYRDFSGKF-DVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVH 515
NQKYR+ +F DVGL+TGDV+L P+ASCL+MTTEILRSMLYRG++I++++ WV++DE+H
Sbjct: 182 NQKYRELEEEFKDVGLMTGDVTLNPDASCLVMTTEILRSMLYRGSEIMKEVGWVVYDEIH 241
Query: 516 YVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVP 575
Y+ D ERGVVWEE II++ ++I LSAT+PN +FA W+ KQ+ + V T RP P
Sbjct: 242 YMRDKERGVVWEETIILMSKNIKQAFLSATIPNARQFAQWVASIKQQPVNVVYTDYRPTP 301
Query: 576 LEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQ 635
L+H +Y P G + + K + +G ++ D A
Sbjct: 302 LQHWIY---------------PVGGEGMYEVVNVKGEFREDKFRDAMSGLATAGDSA--- 343
Query: 636 KREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSK 695
G NK + GG+Q + + L +I ++ L ++F FS+
Sbjct: 344 -------GSFNKR-----RTGGGTQGDSNV--------LKIIRSVASNDGLNCIVFSFSR 383
Query: 696 NHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHH 755
C+ A + +D EK ++ + A ++L D+ LPQI+ + LLRRGI +HH
Sbjct: 384 KECESYAISLKDMDFNKDHEKGMVKSVYESAIAQLSPEDQKLPQILNILPLLRRGIGVHH 443
Query: 756 AGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGE 815
+GL+PI+KE IE+LF G+VKVLF+TETF+MG+N PARTVVF + RKFDG + R + GE
Sbjct: 444 SGLMPILKETIEILFGEGLVKVLFATETFSMGLNMPARTVVFTSARKFDGSDNRYITSGE 503
Query: 816 YTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQFRLTYIMILHLLR 875
Y QMAGRAGRRG D GTV+++ D D K II G+ L SQFRLTY M+L+L+R
Sbjct: 504 YIQMAGRAGRRGKDDRGTVILMV-DSAMSADDAKQIIKGATDPLNSQFRLTYNMVLNLMR 562
Query: 876 VEELKVEDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTIECIK--GEPAIEEYYDMYY 933
VE + V ++ SF +F S K+PE + +K Q + I E + D+
Sbjct: 563 VEGMAVSWIINNSFHQFQSYAKIPE----IDKKCVQVERKIASFNFPWENEMRTLVDLQD 618
Query: 934 EAEKYNNQITEAFMQSAH--QFLMPGRVLFVKS 964
+ E +I + + + FL GR+ VKS
Sbjct: 619 QLEATRQRIIQIQREPKYIVGFLHAGRLFKVKS 651
Score = 147 bits (370), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 152/270 (56%), Gaps = 9/270 (3%)
Query: 1111 LDPVKDLKLKDMNLVEAYYKWAGLLRKMAANKCHGCIKLEEHMKLTKENKRHKD---EVN 1167
LDP++D+++K + + E + L ++ + H K + L K+ ++ +D E+N
Sbjct: 762 LDPIQDMEIKTVEMKELIAREKSLEGRL---ETHSMTKRDNMKDLKKQFEQKQDAVKELN 818
Query: 1168 TLKFQM-SDEALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLF 1226
LK + S ++ + + R VL+ +G + D + +KG VACE+++ +ELI TE L
Sbjct: 819 ALKAERKSVQSTLHLEELNNRKRVLRRLGYLGNDDALVLKGSVACELSASDELILTEMLL 878
Query: 1227 ENQLDDLEPEEAVAIMSAFVFQQRNTSEPSLTPKLSVAKERLYNTAIRLGELQAHFKVQI 1286
+ + L+ + A++S FVFQ + + P L +L L+ A + ++ K+++
Sbjct: 879 KGIFNTLDVAQTAALLSCFVFQDK-CAAPKLATELQTCLSELHEQARNVAKVSNECKMEV 937
Query: 1287 DPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAAA 1346
++Y + GL++VVY+W G F++I + TDV EG I+RT+ RL+E RE NAA
Sbjct: 938 MEDKYV-SSFNPGLMDVVYQWVNGATFSEIVKTTDVFEGSIIRTLRRLEEVLREMINAAK 996
Query: 1347 IMGNSALYKKMETASNAIKRDIVFAASLYI 1376
+ N L +K E A +KRDIVFAASLY+
Sbjct: 997 ALANKELEQKFEDARKNLKRDIVFAASLYL 1026
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1
Length = 1030
Score = 431 bits (1107), Expect = e-119, Method: Compositional matrix adjust.
Identities = 239/576 (41%), Positives = 339/576 (58%), Gaps = 53/576 (9%)
Query: 394 ALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIK 453
A +PFELD FQ AI +E +SV V+AHTSAGKTV+AEYA A A K+ R +YT+PIK
Sbjct: 119 AKTYPFELDPFQSTAIKCVERMESVLVSAHTSAGKTVIAEYAIAQALKNRQRVIYTSPIK 178
Query: 454 TISNQKYRDFSGKF-DVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFD 512
++SNQKYR+ +F DVGL+TGDVS+ P ASCLIMTTEILR+MLY+ ++I+ +I WVIFD
Sbjct: 179 SLSNQKYRELLSEFGDVGLMTGDVSINPSASCLIMTTEILRAMLYKNSEIMHEIAWVIFD 238
Query: 513 EVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKR 572
EVHY+ D +RGVVWEE +I+LP I + LSAT+PN ++FA WI ++ V T R
Sbjct: 239 EVHYMRDKDRGVVWEETLILLPDAIRFIFLSATLPNALQFARWISEIHKQPCHVVYTDYR 298
Query: 573 PVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGA 632
P PL+H +Y PQG DG
Sbjct: 299 PTPLQHFIY---------------PQG-----------------------------ADGI 314
Query: 633 RAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTL---INKLSKKSLLPVV 689
E +N V+ + + Q N+ +V +L IN + P++
Sbjct: 315 YMLVDEKNKFKTENFKKVLEVLDHSTRQENYSKSSKKVKKSSSLERIINMVLSNRYDPII 374
Query: 690 IFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRR 749
+FCFSK C+ A +DL + K + D A ++L DR L Q ++SLL R
Sbjct: 375 VFCFSKKECEINAHQFGKLDLNDTENKELVTEIFDSAINQLSEEDRGLRQFEEMRSLLLR 434
Query: 750 GIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFR 809
GI IHH+GLLPI+KE++E+LF G+V++LF+TETF++G+N PARTV+F +KF G FR
Sbjct: 435 GIGIHHSGLLPILKELVEILFQEGLVRILFATETFSIGLNMPARTVLFTKAQKFSGNNFR 494
Query: 810 QLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQFRLTYIM 869
L GEY QM+GRAGRRG+D G +V+ D+ E + ++ G A L S F L+Y M
Sbjct: 495 WLTSGEYMQMSGRAGRRGIDTKGLSIVIL-DQSIDEQAARCLMNGQADVLNSAFHLSYGM 553
Query: 870 ILHLLRVEELKVEDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTIECIKGEPAIEEYY 929
IL+L+R+EE+ ED+LK+SF +F + + LP ++ LM +L +I I E A++E++
Sbjct: 554 ILNLMRIEEISPEDILKKSFYQFQNMESLPLIKEELM-QLKNEETSIN-IPNETAVKEFH 611
Query: 930 DMYYEAEKYNNQITEAFMQ--SAHQFLMPGRVLFVK 963
D+ + EKY +I + + +L GR++ +K
Sbjct: 612 DLKLQLEKYGEEIQKVMTHPDNCLPYLQSGRLIQIK 647
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 117/205 (57%), Gaps = 8/205 (3%)
Query: 1176 EALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDDLEP 1235
EA+ Q+ + + R VL+ +G + V+ IKGRVACE+ SG+EL+ E +F+ + + P
Sbjct: 830 EAIIQLRELKIRQRVLRRLGFCTLENVIDIKGRVACEITSGDELLLVELIFQGFFNQMPP 889
Query: 1236 EEAVAIMSAFVFQQRNTSEPSLTPKLSVAKERLYNTAI----RLGELQAHFKVQIDPEEY 1291
EE A +S FV++ + SE S T L +++Y T I R+ + K+Q + +Y
Sbjct: 890 EEIAAALSCFVYEDK--SEVS-TLNLKEPFKKMYLTIIEAAKRIATVSLESKLQFNESDY 946
Query: 1292 ARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIMGNS 1351
K ++E V W G F +IC ++ + EG IVRT RLDE ++ +AA ++GN+
Sbjct: 947 LH-QFKPDIMEPVSLWINGASFQEICIVSKLYEGSIVRTFRRLDELLKQLEHAAIVLGNN 1005
Query: 1352 ALYKKMETASNAIKRDIVFAASLYI 1376
L +K + RDI+F+ASLY+
Sbjct: 1006 ELKEKSVLTEQKLHRDIIFSASLYL 1030
>sp|B9DFG3|ISE2_ARATH DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic
OS=Arabidopsis thaliana GN=ISE2 PE=1 SV=2
Length = 1171
Score = 287 bits (735), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 185/490 (37%), Positives = 268/490 (54%), Gaps = 32/490 (6%)
Query: 397 FPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTIS 456
+ F +D FQ+ AI G SV V+A TS+GKT++AE A R YT P+K +S
Sbjct: 151 YDFRIDKFQRLAIEAFLRGSSVVVSAPTSSGKTLIAEAAAVSTVAKGRRLFYTTPLKALS 210
Query: 457 NQKYRDFSGKF---DVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADI------IRDIE 507
NQK+R+F F +VGLLTGD ++ +A +IMTTEILR+MLY+ + + ++
Sbjct: 211 NQKFREFRETFGDDNVGLLTGDSAINKDAQIVIMTTEILRNMLYQSVGMASSGTGLFHVD 270
Query: 508 WVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVT 567
++ DEVHY++DI RG VWEE++I P+ + ++ LSATV N E A WIG K VT
Sbjct: 271 AIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGEIHGKTELVT 330
Query: 568 GTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASS 627
+T+RPVPL Y+S + + +P + + ++ +L+ + S A
Sbjct: 331 -STRRPVPL--TWYFSTK-------HSLLPLLDEKGINVNRKLSLNYLQ-LSASEARFRD 379
Query: 628 PRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWG-LRRSEVSIWLTLINKLSKKSLL 686
DG R ++R G + +++V + + S+N +RRS+V + L K++L
Sbjct: 380 DDDGYR-KRRSKKRGGDTSYNNLVNVTDYPLSKNEINKIRRSQVPQISDTLWHLQGKNML 438
Query: 687 PVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVR--VQ 744
P + F F++ CD + L EKSE+ + K F L P VR +
Sbjct: 439 PAIWFIFNRRGCDAAVQYVENFQLLDDCEKSEVELALKK-FRVL------YPDAVRESAE 491
Query: 745 SLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFD 804
L RGIA HHAG LP+ K IE LF RG+VKV+F+TET A G+N PART V +L K
Sbjct: 492 KGLLRGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKKA 551
Query: 805 GREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQFR 864
G E +L P E QMAGRAGRRG+D+ G VL + G + ++ L SQF
Sbjct: 552 GNERIELGPNELYQMAGRAGRRGIDEKG-YTVLVQTAFEGAEECCKLVFAGVKPLVSQFT 610
Query: 865 LTYIMILHLL 874
+Y M+L+L+
Sbjct: 611 ASYGMVLNLV 620
>sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3
SV=1
Length = 906
Score = 287 bits (734), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 184/514 (35%), Positives = 264/514 (51%), Gaps = 50/514 (9%)
Query: 396 DFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTI 455
+ PF LD+FQ+ A LE G V V A T AGKTVV E+A LA ++ YT P+K +
Sbjct: 13 ELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFYTTPLKAL 72
Query: 456 SNQKYRDFSGKF---DVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFD 512
SNQK+ D + ++ +GLLTGD+S+ A ++MTTE+LR+MLY + ++ + +V+ D
Sbjct: 73 SNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQGLSYVVMD 132
Query: 513 EVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKR 572
EVH++ D RG VWEEVI+ LP + +V LSATV N EF WI +T + V R
Sbjct: 133 EVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWI-QTVRGDTTVVVDEHR 191
Query: 573 PVPL-EHCLYYSGEF----YKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASS 627
PVPL +H L F Y++ E E + + R+ + G+
Sbjct: 192 PVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRMADWQPRRRGSGR 251
Query: 628 PRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLP 687
P G G R EV I KL + LLP
Sbjct: 252 P-----------------------GFYRPPG--------RPEV------IAKLDAEGLLP 274
Query: 688 VVIFCFSKNHCDKLADG--MSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQS 745
+ F FS+ CD S + LTS E++ I D L SD + +
Sbjct: 275 AITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWRE 334
Query: 746 LLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDG 805
L RG+A HHAG+LP + +E LF G+VK +F+TET A+G+N PARTVV + L KF+G
Sbjct: 335 GLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNG 394
Query: 806 REFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQFRL 865
+ L PGEYTQ+ GRAGRRG+D G VV+ EI S++ + L S F
Sbjct: 395 EQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIE-PSEVAGLASTRTFPLRSSFAP 453
Query: 866 TYIMILHLL-RVEELKVEDMLKRSFAEFHSQKKL 898
+Y M ++L+ R+ + +L++SFA++ + + +
Sbjct: 454 SYNMTINLVHRMGPQQAHRLLEQSFAQYQADRSV 487
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 102/252 (40%), Gaps = 30/252 (11%)
Query: 1137 KMAANKCHGCIKLEEHMKLTKENKRHKDEVNTLKFQMSDEALQQMPDFQGRIDVLKEIGC 1196
++ + H LE+ ++ + R + + L+ +++ F + +L E
Sbjct: 661 QLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTEREF 720
Query: 1197 IDA---DLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEAVAIMSAFVFQQRNTS 1253
ID D VV GR+ + S +L+ ECL + L+P E ++SA V++ R
Sbjct: 721 IDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYETRGGD 780
Query: 1254 EPSL-------TPKL--SVAKERLYNTAIRLGELQAHFKVQIDPEEYARDNLKFGLVEVV 1304
TP+L ++ + +T +R E QAH +I P D G V V+
Sbjct: 781 GQGAPFGADVPTPRLRQALTQTSRLSTTLRADE-QAH---RITPSREPDD----GFVRVI 832
Query: 1305 YEWAKGTPFADICELTDVP-------EGLIVRTIVRLDETCREFRNAAAIMGNSALYKKM 1357
Y W++ A DV G VR ++ + + RNAA N L
Sbjct: 833 YRWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAP---NPELRATA 889
Query: 1358 ETASNAIKRDIV 1369
+ A I+R +V
Sbjct: 890 KRAIGDIRRGVV 901
>sp|Q9ZBD8|HELY_MYCLE Probable helicase HelY OS=Mycobacterium leprae (strain TN) GN=helY
PE=3 SV=1
Length = 920
Score = 277 bits (708), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 178/511 (34%), Positives = 269/511 (52%), Gaps = 38/511 (7%)
Query: 396 DFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTI 455
+ PF LD+FQ+ A LE G V V A T AGKTVV E+A LA + YT P+K +
Sbjct: 13 ELPFSLDDFQQRACAALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGGKCFYTTPLKAL 72
Query: 456 SNQKYRDFSGKFD---VGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFD 512
SNQKY D + ++ +GLLTGD S+ ++ ++MTTE+LR+MLY + ++ + V+ D
Sbjct: 73 SNQKYTDLTARYGRNRIGLLTGDQSVNGDSPVVVMTTEVLRNMLYADSFALQGLSHVVMD 132
Query: 513 EVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKR 572
EVH++ D RG VWEEVI+ LP + +V LSATV N EF W+ +T + V R
Sbjct: 133 EVHFIADRMRGPVWEEVILHLPDDVRMVSLSATVSNAEEFGGWV-QTVRGDTTVVVDEHR 191
Query: 573 PVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGA 632
PVPL + + + + ++ + Q + NL + R+
Sbjct: 192 PVPLWQHVLVGKRLFDLFDYDSNVDQ-------SPVNPNL---------LRHIAHCREAD 235
Query: 633 RAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFC 692
R +P R + + S G++ + L R EV I L + LLP + F
Sbjct: 236 RMSDWRNPRR-RAGRGS--GVR----PRFYRSLARPEV------IAILDAEGLLPAITFV 282
Query: 693 FSKNHCDKLADGM--SGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRG 750
FS+ CD S + LTS E+++I D L +D + + L RG
Sbjct: 283 FSRFGCDAAVQQCLRSPLRLTSEEERAQIAEVIDHRCGDLADADLAVLGYYEWREGLLRG 342
Query: 751 IAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQ 810
+A HHAG+LP + +E LF G+VK +F+TET A+G+N PARTVV + L KF+G++
Sbjct: 343 LAAHHAGMLPAFRHAVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGKQHVP 402
Query: 811 LLPGEYTQMAGRAGRRGLDKIGTVVVLCR--DEIPGESDLKHIIVGSATRLESQFRLTYI 868
L PGEYTQ+ GRAGRRG+D G VV+ ++ G S + + L S F +Y
Sbjct: 403 LTPGEYTQLTGRAGRRGIDVEGHAVVIWHPSEDTSGPSAVAGLASARTFPLRSSFVPSYN 462
Query: 869 MILHLLR-VEELKVEDMLKRSFAEFHSQKKL 898
M ++L+ + + +L++SFA++ + + +
Sbjct: 463 MTINLVHWMSPERAHALLEQSFAQYQADRSV 493
Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 19/120 (15%)
Query: 1200 DLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEAVAIMSAFVFQQRNTSEP---- 1255
D V GR+ + S +L+ ECL L P E A++SA +++ R P
Sbjct: 741 DPQVTDDGRLLARIYSESDLLVAECLRTGAWAGLRPAELAAVVSAVLYETRGDDGPGGPV 800
Query: 1256 ---SLTPKLSVAKE---RLYNTAIRLGELQAHFKVQIDPEEYARDNLKFGLVEVVYEWAK 1309
+ TP+L A + RL T +R E + + +P++ G V V+Y WA+
Sbjct: 801 DAEAPTPRLRQALQHTSRLSAT-LRADEQRHRIALSREPDD--------GFVGVIYCWAR 851
>sp|Q9YFQ8|HELS_AERPE Putative ski2-type helicase OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0191.1
PE=3 SV=2
Length = 735
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 86/150 (57%), Gaps = 4/150 (2%)
Query: 689 VIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLR 748
++F +S+ LA + L E RV+ +A SR +G+ R++ + + SL+
Sbjct: 250 LVFTYSRRRAVTLAK-RAAKRLGRRLSSREARVYSAEA-SRAEGAPRSVAE--ELASLIA 305
Query: 749 RGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREF 808
GIA HHAGL P +++ +E F G VKV++ST T A GVN PAR VV D+ +++
Sbjct: 306 AGIAYHHAGLPPSLRKTVEEAFRAGAVKVVYSTPTLAAGVNLPARRVVIDSYYRYEAGFR 365
Query: 809 RQLLPGEYTQMAGRAGRRGLDKIGTVVVLC 838
+ EY QMAGRAGR GLD+ G +++
Sbjct: 366 EPIRVAEYKQMAGRAGRPGLDEFGEAIIVA 395
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 97/185 (52%), Gaps = 15/185 (8%)
Query: 412 LENGDSVFVAAHTSAGKTVVAEYAFALA-TKHCTRAVYTAPIKTISNQKYRDFSGKFDVG 470
+E G+++ VAA T +GKT +A A + + RA Y P+K+++ +KY FS +G
Sbjct: 40 VEKGENLVVAAPTGSGKTFIALVAIVNSLARAGGRAFYLVPLKSVAYEKYTSFSILSRMG 99
Query: 471 L----LTGDV-SLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVV 525
L GD PEA +I T E S+L + R++ +I DE+H V+D +RG +
Sbjct: 100 LKLKISVGDFREGPPEAPVVIATYEKFDSLLRVSPSLARNVSVLIVDEIHSVSDPKRGPI 159
Query: 526 WEEVI---IMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYY 582
E ++ + +V LSATVPN E A+WIG ++ ++ RPVPL ++
Sbjct: 160 LESIVSRMLASAGEAQLVGLSATVPNAGEIAEWIGG------KIVESSWRPVPLREYVFK 213
Query: 583 SGEFY 587
+ Y
Sbjct: 214 EYKLY 218
>sp|Q09475|YP93_CAEEL Uncharacterized helicase C28H8.3 OS=Caenorhabditis elegans GN=C28H8.3
PE=3 SV=2
Length = 1714
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 82/154 (53%), Gaps = 20/154 (12%)
Query: 746 LLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDG 805
L RGI HHAGL + + +E+LF G + VLFST T ++GVN P +TV+F G
Sbjct: 1277 LFERGIGYHHAGLNTVERGAVEVLFRSGNLAVLFSTSTLSLGVNMPCKTVMF-------G 1329
Query: 806 REFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQFRL 865
+ QL P Y QM+GRAGRRG D G V+ + IP S ++ ++ S + L+
Sbjct: 1330 VDTLQLTPLLYRQMSGRAGRRGFDHSGNVIFMS---IP-TSKVRRLLTASLSNLQGNPPF 1385
Query: 866 TYIMILHL---------LRVEELKVEDMLKRSFA 890
T + +L L L E KV M +R+FA
Sbjct: 1386 TVLFLLRLFAYVHQQDILNEEGQKVSTMKQRAFA 1419
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 92/182 (50%), Gaps = 19/182 (10%)
Query: 399 FELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAF--ALATKHCTRAVYTAPIKTIS 456
F D +Q++ + ++ G+S + A TSAGKT V+ Y L + VY AP K +
Sbjct: 783 FAPDGWQRKMLDSVDRGNSALIIAPTSAGKTFVSYYCIEKVLRSSDNDVVVYVAPSKALI 842
Query: 457 NQ-------KYRDFSGKFDV---GLLTGDVSLRP-EASCLIMTTEILRS-MLYRGADI-- 502
NQ ++R+ S K + G LT + S + LI E L+ ML R +
Sbjct: 843 NQVCGSVYARFRNKSMKRGISLFGTLTQEYSQNAMQCQVLITVPECLQELMLSRTPAVQK 902
Query: 503 -IRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQ 561
+ I++V+FDEVH + E +WE++++++ + LSAT+ N + +W+ ++Q
Sbjct: 903 FVSHIKYVVFDEVHSIGASEESHIWEQLLLLI--QCPFLALSATIGNANKLHEWLNSSEQ 960
Query: 562 KK 563
K
Sbjct: 961 AK 962
>sp|Q9HMV6|HELS_HALSA Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=VNG_2368G PE=3 SV=1
Length = 783
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 115/458 (25%), Positives = 183/458 (39%), Gaps = 104/458 (22%)
Query: 405 QKEAIYY-LENGDSVFVAAHTSAGKTVVAEYAFALATKHCT---------RAVYTAPIKT 454
Q EA+ + G ++ + T++GKT++A+ A A A+Y P++
Sbjct: 29 QAEAVERGVTEGANLVASVPTASGKTLIAQLAMLSAIAEGGDSPTFSGDGTALYIVPLRA 88
Query: 455 ISNQKYRDFSG----KFDVGLLTG----DVSLRPEASCLIMTTEILRSMLYRGADIIRDI 506
++ +K ++F VG+ TG D + + ++ T+E + S++ GA I D+
Sbjct: 89 LAGEKAQEFEAFERFGLSVGVSTGNYERDGARLADNDIVVATSEKVDSLVRNGAGWIDDL 148
Query: 507 EWVIFDEVHYVNDIERGVVWEEVIIMLPRHI---NIVLLSATVPNTVEFADWIGRTKQKK 563
V+ DEVH V+D RG E + L + + +V LSATV N E A W+
Sbjct: 149 SCVVADEVHLVDDDHRGPTLEVTLAKLRQQVADLQVVALSATVGNAGELAAWL------D 202
Query: 564 IRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGA-TGSY 622
+ + RP+ L ++Y + D + LS SG+ T +
Sbjct: 203 AELVDSDWRPIELRTGVHYGQSLH----------------YDDGTQAELSVGSGSQTAAV 246
Query: 623 AGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSK 682
+ DG S + NS RR+ + S
Sbjct: 247 VADTLADDG-----------------STLVFVNS---------RRN---------AEASA 271
Query: 683 KSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVR 742
+ L V S ++LAD +EIR D + SD +
Sbjct: 272 RRLADVTGNALSSAERERLAD-----------IAAEIRGVSDT-----ETSDELADAVAS 315
Query: 743 VQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRK 802
+ G+A H +E++E F +VK + +T T A GVN PAR VV + ++
Sbjct: 316 GAAFHHAGLAREH-------RELVEEAFRDRLVKAVSATPTLAAGVNTPARRVVVRDWQR 368
Query: 803 FDGRE--FRQLLPGEYTQMAGRAGRRGLDKIGTVVVLC 838
+DG + L E QM GRAGR GLD G V+L
Sbjct: 369 YDGTAGGMQPLDVLEVHQMFGRAGRPGLDPYGEAVLLA 406
>sp|B0R7Q2|HELS_HALS3 Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=OE_4325F PE=3 SV=1
Length = 783
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 115/458 (25%), Positives = 183/458 (39%), Gaps = 104/458 (22%)
Query: 405 QKEAIYY-LENGDSVFVAAHTSAGKTVVAEYAFALATKHCT---------RAVYTAPIKT 454
Q EA+ + G ++ + T++GKT++A+ A A A+Y P++
Sbjct: 29 QAEAVERGVTEGANLVASVPTASGKTLIAQLAMLSAIAEGGDSPTFSGDGTALYIVPLRA 88
Query: 455 ISNQKYRDFSG----KFDVGLLTG----DVSLRPEASCLIMTTEILRSMLYRGADIIRDI 506
++ +K ++F VG+ TG D + + ++ T+E + S++ GA I D+
Sbjct: 89 LAGEKAQEFEAFERFGLSVGVSTGNYERDGARLADNDIVVATSEKVDSLVRNGAGWIDDL 148
Query: 507 EWVIFDEVHYVNDIERGVVWEEVIIMLPRHI---NIVLLSATVPNTVEFADWIGRTKQKK 563
V+ DEVH V+D RG E + L + + +V LSATV N E A W+
Sbjct: 149 SCVVADEVHLVDDDHRGPTLEVTLAKLRQQVADLQVVALSATVGNAGELAAWL------D 202
Query: 564 IRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGA-TGSY 622
+ + RP+ L ++Y + D + LS SG+ T +
Sbjct: 203 AELVDSDWRPIELRTGVHYGQSLH----------------YDDGTQAELSVGSGSQTAAV 246
Query: 623 AGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSK 682
+ DG S + NS RR+ + S
Sbjct: 247 VADTLADDG-----------------STLVFVNS---------RRN---------AEASA 271
Query: 683 KSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVR 742
+ L V S ++LAD +EIR D + SD +
Sbjct: 272 RRLADVTGNALSSAERERLAD-----------IAAEIRGVSDT-----ETSDELADAVAS 315
Query: 743 VQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRK 802
+ G+A H +E++E F +VK + +T T A GVN PAR VV + ++
Sbjct: 316 GAAFHHAGLAREH-------RELVEEAFRDRLVKAVSATPTLAAGVNTPARRVVVRDWQR 368
Query: 803 FDGRE--FRQLLPGEYTQMAGRAGRRGLDKIGTVVVLC 838
+DG + L E QM GRAGR GLD G V+L
Sbjct: 369 YDGTAGGMQPLDVLEVHQMFGRAGRPGLDPYGEAVLLA 406
>sp|Q97VY9|HELS_SULSO Putative ski2-type helicase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=SSO2462 PE=1 SV=1
Length = 708
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 84/141 (59%), Gaps = 6/141 (4%)
Query: 743 VQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRK 802
++SL+ +G+A HHAGL ++++IE F + +KV+ +T T A GVN PARTV+ ++ +
Sbjct: 300 LKSLISKGVAYHHAGLSKALRDIIEESFRKRKIKVIVATPTLAAGVNLPARTVIIGDIYR 359
Query: 803 FDGR---EFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRL 859
F+ + + ++ EY QM+GRAGR G D+IG +++ RD+ + K I+ +
Sbjct: 360 FNRKIVGYYDEIPVMEYKQMSGRAGRPGFDQIGESIIVVRDKEDVDRVFKKYILSDVEPI 419
Query: 860 ESQF---RLTYIMILHLLRVE 877
ES+ R Y +L +L E
Sbjct: 420 ESKLGSERAFYTFLLGILSAE 440
Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 16/180 (8%)
Query: 412 LENGDSVFVAAHTSAGKTVVAEYAF-ALATKHCTRAVYTAPIKTISNQKYRDF----SGK 466
L +G+ + + + T +GKT++AE + K+ +A+Y P++ ++N+KY F S
Sbjct: 36 LLDGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWESIG 95
Query: 467 FDVGLLTGDV----SLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIER 522
F V + +GD + +I T E L S+ D + + + + DE+HY+ND ER
Sbjct: 96 FKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPDWLNEANYFVLDELHYLNDPER 155
Query: 523 GVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYY 582
G V E V I R N++ LSAT+ N + A W+G T RPVPL + Y
Sbjct: 156 GPVVESVTIRAKRR-NLLALSATISNYKQIAKWLGAEP------VATNWRPVPLMEGVMY 208
>sp|Q9V0A9|HELS_PYRAB Putative ski2-type helicase OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB08810 PE=3 SV=1
Length = 715
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 94/179 (52%), Gaps = 15/179 (8%)
Query: 415 GDSVFVAAHTSAGKTVVAEYAFA-LATKHCTRAVYTAPIKTISNQKYRDFSG----KFDV 469
G+++ VA T++GKT++AE A A + +AVY P+K ++ +K+R+F V
Sbjct: 39 GENLLVAIPTASGKTLIAEIAIANKLLEEGGKAVYIVPLKALAEEKFREFKDWERLGLKV 98
Query: 470 GLLTGDVSLRPE----ASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVV 525
+ TGD + E +I T E S+L G+ IRD++ ++ DE+H + +RG
Sbjct: 99 AMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIRDVKMLVIDEIHLIGSRDRGAT 158
Query: 526 WEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSG 584
E +I + I+ LSAT+ N E A+W+ K IR + RPV L ++Y G
Sbjct: 159 LEFIITQMLGRAQIIGLSATIGNPEELAEWLN---AKLIR---SDWRPVKLRKGVFYQG 211
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 10/179 (5%)
Query: 738 PQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVF 797
P ++ L G+A HHAGL + ++E F +G++KV+ +T T + G+N PA V+
Sbjct: 284 PTNEKLAKALLSGVAFHHAGLGRDERVLVEDNFRKGLIKVVVATPTLSAGINTPAFRVII 343
Query: 798 DNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSAT 857
+ ++ ++ E QM GRAGR D++G +++ E P + H I G
Sbjct: 344 RDTWRYSEFGMERIPVLEVQQMMGRAGRPRYDEVGEAIIVSTTEEPSLV-IDHYIKGKPE 402
Query: 858 RLESQFRLTYIM---ILHLLRV----EELKVEDMLKRSFAEFHSQKKLPEQQQLLMRKL 909
+L SQ I+ IL L+ E ++ D L+R+F + Q K P + +R++
Sbjct: 403 KLFSQLSNESILRSQILALIATFGYSEFKEIYDFLERTF--YAHQGKDPYMLEEKIRRI 459
>sp|Q9HJX7|HELS_THEAC Putative ski2-type helicase OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta0835 PE=3 SV=1
Length = 674
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 105/201 (52%), Gaps = 19/201 (9%)
Query: 399 FELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQ 458
F+L + Q+ AI + G +V V+ T+AGKT++A A + +++Y P+++++ +
Sbjct: 21 FQLYDHQRMAIEQIRKGRNVVVSVPTAAGKTLIAYSAIYETFQRNLKSIYIVPLRSLAME 80
Query: 459 KYRDFSGKFDVGLLT----GDVSLRPE----ASCLIMTTEILRSMLYRGADIIRDIEWVI 510
K+ + S D+GL GD P+ +I+T+E S+L+ I+ D+ ++
Sbjct: 81 KFSELSRLRDLGLKVKMSIGDYDDSPDFIKRYDAVILTSEKADSLLHHDPYILNDVGLLV 140
Query: 511 FDEVHYVNDIERGVVWEEVIIMLPRHIN----IVLLSATVPNTVEFADWIGRTKQKKIRV 566
DE+H + D RG E V + R++N I+ LSATV N +E A W+ + K
Sbjct: 141 LDEIHTIGDESRGPTLETV-ASIARYVNPDVRILALSATVSNAMELASWLDASLIK---- 195
Query: 567 TGTTKRPVPLEHCLYYSGEFY 587
+ RPVPL+ + Y + Y
Sbjct: 196 --SDFRPVPLKTGILYRDQLY 214
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 49/90 (54%)
Query: 743 VQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRK 802
+ +L RG+A HHAGL + IE F +KV+ +T T A GVN PAR V+ ++ +
Sbjct: 280 LNEILPRGVAFHHAGLSNDQRAFIEREFRARRIKVIVATPTLAAGVNLPARLVIVRDITR 339
Query: 803 FDGREFRQLLPGEYTQMAGRAGRRGLDKIG 832
+ L E QM GRAGR G D+ G
Sbjct: 340 WGSDGISYLTNMEIKQMIGRAGRPGYDQYG 369
>sp|Q5JGV6|HELS_PYRKO Putative ski2-type helicase OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1332 PE=3 SV=1
Length = 1125
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 94/384 (24%), Positives = 161/384 (41%), Gaps = 101/384 (26%)
Query: 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCT---RAVYTAPIKTISNQKYRDFSGKFDVGL 471
G ++ +A T++GKT+V+E + K + +AVY P+K ++ +KYR+F +GL
Sbjct: 39 GKNLVLAIPTASGKTLVSE--IVMVNKLLSEGGKAVYLVPLKALAEEKYREFKEWEVLGL 96
Query: 472 ----LTGDVSLRPE----ASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERG 523
TGD E ++ T E S+L GA I+D++ V+ DEVH + +RG
Sbjct: 97 RVAATTGDYDSTDEWLGRYDIIVATAEKFDSLLRHGASWIKDVKLVVADEVHLIGSYDRG 156
Query: 524 VVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYS 583
E ++ + I+ LSATV N E A+W+ + + + RPV L +++
Sbjct: 157 ATLEMILTHMLGKAQILALSATVGNAEELAEWLDAS------LVVSDWRPVELRKGVFHL 210
Query: 584 GEFYKVCENEAFIPQGWKA-AKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNR 642
G+ + P+ W++ DA K +
Sbjct: 211 GQLFWEDGKIDHYPENWESLVLDAVK---------------------------------K 237
Query: 643 GKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLA 702
GKQ ++V + RRS ++L +K+SK +K +L
Sbjct: 238 GKQ---ALVFVNT----------RRSAEKEAISLSSKVSK---------LLTKPETRRLE 275
Query: 703 DGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIV 762
+ +S I+ ++EK ++ L+ G+A HHAGL
Sbjct: 276 ELISSIEDNPTTEK--------------------------LKRALKGGVAFHHAGLSRAE 309
Query: 763 KEVIEMLFCRGVVKVLFSTETFAM 786
+ +IE F G++KV+ +T T M
Sbjct: 310 RTLIEDAFRNGLIKVITATPTLCM 333
Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 785 AMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPG 844
+ G+N PA V+ + +++ + + E QM GRAGR DK+G +++ R E P
Sbjct: 735 SAGINLPAFRVIIRDTKRYANFGWTDIPVLEIQQMMGRAGRPKYDKVGEAIIVARTEDPK 794
Query: 845 ESDLKHIIVGSATRL------ESQFRLTYIMILHLLRVEELK-VEDMLKRSF 889
+ + I G +L E FR + ++ VE+ + + D L R+F
Sbjct: 795 KL-IDRYIHGKPEKLFSMLANEQAFRSQVLALITNFGVEDFRELVDFLSRTF 845
>sp|O59025|HELS_PYRHO Putative ski2-type helicase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=PH1280 PE=3 SV=1
Length = 715
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 105/206 (50%), Gaps = 19/206 (9%)
Query: 415 GDSVFVAAHTSAGKTVVAEYAFA-LATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGL-- 471
G++ +A T++GKT++AE A K +AVY P+K ++ +K+++F ++GL
Sbjct: 39 GENALIAIPTASGKTLIAEIAIVNRLLKEGGKAVYLVPLKALAEEKFKEFKDWEELGLKV 98
Query: 472 --LTGDVSLRPE----ASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVV 525
TGD + E +I T E S+L G+ IR+++ ++ DE+H + +RG
Sbjct: 99 AMATGDYDSKDEWLGGYDIIIATAEKFDSLLRHGSSWIRNVKVLVVDEIHLIGSRDRGAT 158
Query: 526 WEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSG- 584
E +I + I+ LSAT+ N E A+W+ ++ + RPV L ++Y G
Sbjct: 159 LEFIITQMLNRAQIIGLSATIGNPEELAEWLN------AKLIKSDWRPVKLRRGVFYQGF 212
Query: 585 EFYKVCENEAFIPQGWKA-AKDAYKR 609
F++ + E F W+ DA KR
Sbjct: 213 VFWEDGKTEKF--NSWEELVYDAIKR 236
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 8/165 (4%)
Query: 738 PQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVF 797
P ++ L+ G+A HHAGL + ++E F +G++KV+ +T T + G+N PA V+
Sbjct: 284 PTNEKLAKALQGGVAFHHAGLGREERVLVEENFKKGLIKVVVATPTLSAGINTPAFRVIV 343
Query: 798 DNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSAT 857
+ ++ ++ E QM GRAGR D++G +++ E P + ++ I G
Sbjct: 344 RDTWRYSEFGMERIPILEIQQMMGRAGRPKYDEVGEAIIVSTTEEPS-TVMERYIKGKPE 402
Query: 858 RLESQFRLTYIM---ILHLLRVEEL----KVEDMLKRSFAEFHSQ 895
+L SQ I+ IL L+ ++ D L+R+F + +
Sbjct: 403 KLFSQLSNESILRGQILALIATFNFSSFREIYDFLERTFYAYQGK 447
>sp|A7IB61|HELS_METB6 Putative ski2-type helicase OS=Methanoregula boonei (strain 6A8)
GN=Mboo_2458 PE=3 SV=1
Length = 723
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 95/179 (53%), Gaps = 14/179 (7%)
Query: 412 LENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGK-FDVG 470
L +G ++ VA T++GKT++AE A + + +Y P+K ++++KY +F K VG
Sbjct: 36 LLDGKNLLVAIPTASGKTLIAEMAMHRHIANGGKCLYIVPLKALASEKYEEFGNKGVKVG 95
Query: 471 LLTGDVSLRPEA----SCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVW 526
L TGD+ R +A ++ T+E + S+L GA I DI V+ DE+H ++ +RG
Sbjct: 96 LSTGDLDRRDDALGKNDIIVATSEKVDSLLRNGARWIPDITLVVIDEIHLIDSPDRGPTL 155
Query: 527 EEVIIMLPRH---INIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYY 582
E VI + + ++ LSAT+ N A W+ + ++ RPV L ++Y
Sbjct: 156 EMVIAKMRSKNPGMQLIGLSATIGNPKVLAGWL------DAELVTSSWRPVDLRQGVFY 208
Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 696 NHC-DKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLP-------------QIV 741
N C D +A+G + SS +E F +A +K D L +
Sbjct: 232 NLCLDTIAEGGQCLVFVSSRRNAE--AFAKRAAGAIKSEDAALAACAERLLEGTPTEMVK 289
Query: 742 RVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLR 801
+ + + +G A HHAGL + ++E F + ++K + ST T A G+N PAR V+ +
Sbjct: 290 TLAACVAKGAAFHHAGLSRKERSIVEEAFRKNLLKCISSTPTLAAGLNLPARRVIIRDYL 349
Query: 802 KFDGREFRQLLP-GEYTQMAGRAGRRGLDKIGTVVVLCRD 840
+F E Q +P EY QMAGRAGR LD G V++ ++
Sbjct: 350 RFSAGEGMQPIPVSEYRQMAGRAGRPRLDPYGEAVLIAKE 389
>sp|Q54G57|HELC1_DICDI Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium
discoideum GN=ascc3 PE=3 SV=1
Length = 2195
Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 114/481 (23%), Positives = 195/481 (40%), Gaps = 114/481 (23%)
Query: 413 ENGDSVFVAAHTSAGKTVVAEYA-----------FALATKHCTRAVYTAPIKTISNQKYR 461
++ +++ ++A T AGKT +A + K + +Y AP+K ++++
Sbjct: 496 KSNENILISAPTGAGKTNIALLTILHEIESNINPYGYLDKDNFKIIYIAPLKALASEMVE 555
Query: 462 DFSGKFD-VGL----LTGDVSLR----PEASCLIMTTEILRSMLYRGADI--IRDIEWVI 510
FS +G+ LTGD+ L E ++ T E + + +D+ + + +I
Sbjct: 556 KFSNSLKYLGIVSKELTGDMQLTQKELKETQIIVTTPEKWDVITRKSSDVALTKLVRLII 615
Query: 511 FDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTT 570
DE+H +++ ERG V E ++ R + T Q+ IR+ G +
Sbjct: 616 IDEIHLLHE-ERGPVLECIVARTLRQV--------------------ETTQEMIRIVGLS 654
Query: 571 KRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRD 630
A +P YK + A+G++ SS R
Sbjct: 655 -----------------------ATLPN--------YKDVARFIRAPASGTHFFDSSYRP 683
Query: 631 GARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVI 690
Q G ++ ++ +KN+ N R E S+ K V+I
Sbjct: 684 VPLTQNF----IGVKDNQGIMVMKNN---MNQLCYERLEKSL----------KEGHQVMI 726
Query: 691 FCFSKNHCDKLADGMSGI----DLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSL 746
F S+ K A+ +S + S+E E K F ++K + ++SL
Sbjct: 727 FVHSRKDTVKSAEILSDMAKEKHFRFSNE--EPSFGAKKEFEKVKSKE--------IRSL 776
Query: 747 LRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGR 806
+ GI++HHAGLL + V+E F G +KVL T T A GVN PA TV+ + ++ +
Sbjct: 777 FQHGISVHHAGLLRSDRNVVEKYFANGTIKVLVCTATLAWGVNLPAHTVIIKGTQVYNAK 836
Query: 807 E--FRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHI--IVGSATRLESQ 862
F L + Q+ GRAGR D G +L + L H ++ S+ +ES+
Sbjct: 837 NGGFMDLGISDVMQIFGRAGRPQFDTSGEGFLLT-----SKDKLDHYLSLMSSSMPIESK 891
Query: 863 F 863
F
Sbjct: 892 F 892
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 63/134 (47%), Gaps = 19/134 (14%)
Query: 738 PQIVRVQS-----LLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPA 792
P + RV+ L GI +HHAGL + ++E LF +++L ST T A GVN PA
Sbjct: 1597 PTLARVKDQHLRHTLSFGIGMHHAGLNDGDRTIVESLFGENKIQILISTSTLAWGVNLPA 1656
Query: 793 RTVVFDNLRKFDGREFRQL-LP-GEYTQMAGRAGRRGLDKIGTVVVLCR----------- 839
V+ FDG+ R + P + QM GRAGR DK G +V+
Sbjct: 1657 HLVIIKGTEYFDGKTKRYVDFPLTDVLQMIGRAGRPQFDKEGKAMVMVHEPKKQFYKKFL 1716
Query: 840 -DEIPGESDLKHII 852
D P ES LK +
Sbjct: 1717 YDPFPVESHLKDFL 1730
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 30/204 (14%)
Query: 408 AIYYLENGDSVFVAAHTSAGKTVVAEYAF--ALATKHCTRAVYTAPIKTISNQKYRDFSG 465
+YY N +V + + T +GKT+ AE A + + VY AP+K + ++ D+
Sbjct: 1337 TLYYTNN--NVLLGSPTGSGKTICAELAMFKVFRDEPHMKVVYIAPLKALVRERMNDWKV 1394
Query: 466 KFDVGL------LTGDVSLRPEASCL----IMTTEILR----SMLYRGADIIRDIEWVIF 511
KF L LTGD + P L I+TT + S ++ + + +I
Sbjct: 1395 KFQEKLGKKLVELTGDYT--PNMIALQNADIVTTTPEKWDGISRNWKNRSYVTSVSLLII 1452
Query: 512 DEVHYVNDIERGVVWEEVIIMLPR-------HINIVLLSATVPNTVEFADWIGRTKQKKI 564
DE+H + ++ RG + E ++ + +I +V LS + N ++ ++W+G +
Sbjct: 1453 DEIHLIGEL-RGPILEVIVSRMKLISKQTGVNIRVVGLSTAMANAIDLSEWMGIDRVGLF 1511
Query: 565 RVTGTTKRPVPLE-HCLYYSGEFY 587
+ RPVP+E H + G+ Y
Sbjct: 1512 NFRPSC-RPVPIEVHIQGFQGKNY 1534
>sp|A8MB76|HELS_CALMQ Putative ski2-type helicase OS=Caldivirga maquilingensis (strain
ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=Cmaq_0318 PE=3 SV=1
Length = 756
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 67/103 (65%), Gaps = 3/103 (2%)
Query: 743 VQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRK 802
+ L++ G++ HHAGL V+ VIE F RGV++VL ST T A GVN PAR V+ + R+
Sbjct: 302 LTGLIKCGVSFHHAGLELEVRRVIEEGFRRGVLRVLASTTTLAAGVNLPARRVIVNEYRR 361
Query: 803 FD-GREFRQLLPGEYTQMAGRAGRRGLDKIG--TVVVLCRDEI 842
++ G F ++ EY QMAGRAGR GLD G ++V +DE+
Sbjct: 362 YEPGYGFIEIPVMEYKQMAGRAGRPGLDPYGEAIIIVSSKDEV 404
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 19/205 (9%)
Query: 405 QKEAIYY-LENGDSVFVAAHTSAGKTVVAEYA-FALATKHCTRAVYTAPIKTISNQKYRD 462
Q+EAI L NG+++ + + T++GKT++AE A + +++ P+K ++ +K D
Sbjct: 29 QEEAIRAGLLNGENILMVSATASGKTLLAEVAAVNNVLVNDKKSLVAVPLKALAFEKLND 88
Query: 463 FSGKFDVGLL----TGDVSLRPE----ASCLIMTTEILRSMLYRGADIIRDIEWVIFDEV 514
F+ ++G+ TGD + + +I T E L S+L I ++ +I DE+
Sbjct: 89 FNTYSELGIRVAASTGDYNSEDKWLGSYDVIITTYEKLDSLLRLKPSWIWNVGQLIIDEI 148
Query: 515 HYVNDIERGVVWEEVII---MLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTK 571
H++ND ERG + E ++ ML + I+ LSAT+ N E A+W+ ++ +
Sbjct: 149 HFINDDERGPIIESIVAKLRMLNLNPQIIGLSATIGNPEELANWL------NAKLVKSDW 202
Query: 572 RPVPLEHCLYYSGEFYKVCENEAFI 596
RPV L +Y+ G V + E I
Sbjct: 203 RPVSLREGVYHKGVVTYVNDGEKRI 227
>sp|Q97AI2|HELS_THEVO Putative ski2-type helicase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0828 PE=3 SV=1
Length = 674
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 104/201 (51%), Gaps = 19/201 (9%)
Query: 399 FELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQ 458
FEL + Q+ AI G ++ V+ T+AGKT++A A K +++Y P+++++ +
Sbjct: 21 FELYDHQRMAIEQFRKGKNIMVSVPTAAGKTLIAYSAIYETFKKKLKSIYIVPLRSLAME 80
Query: 459 KYRDFSGKFDVG----LLTGDVSLRPE----ASCLIMTTEILRSMLYRGADIIRDIEWVI 510
KY + S ++G L G+ P+ +I+T+E S+++ ++ ++ ++
Sbjct: 81 KYEELSRLRELGMRVKLSIGNYDDTPDFIKRYDVVILTSEKADSLMHHDPYMMEEVGLMV 140
Query: 511 FDEVHYVNDIERGVVWEEVIIMLPRHIN----IVLLSATVPNTVEFADWIGRTKQKKIRV 566
DE+H + D RG E VI R++N I+ LSATV N E A+W+ + K
Sbjct: 141 IDEIHMIGDEYRGPTLETVITT-ARYVNPETRIIALSATVSNASEIAEWLNASLIK---- 195
Query: 567 TGTTKRPVPLEHCLYYSGEFY 587
++ RPVPL+ + Y +
Sbjct: 196 --SSFRPVPLKVGILYRNRLF 214
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 24/156 (15%)
Query: 688 VVIFCFSKNHCDKLADGMSGI-----DLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVR 742
V+IF S+ + +A +S + DL SSE + V+ D
Sbjct: 239 VLIFVSSRKRAEDMAKNLSQLFDPINDLKVSSEDAN--VYDD-----------------L 279
Query: 743 VQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRK 802
+ +L G++ HHAGL + IE F +KV+ +T T A GVN PAR V+ ++ +
Sbjct: 280 LNEMLPHGVSFHHAGLSNEQRSFIEKAFRHRKLKVIVATPTLAAGVNLPARLVIVKDVTR 339
Query: 803 FDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLC 838
+ L E QM GRAGR G D+ G ++
Sbjct: 340 YGDLGITYLSNMEVKQMIGRAGRPGYDQYGIGIIYA 375
>sp|Q4JC00|HELS_SULAC Putative ski2-type helicase OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=Saci_0263 PE=3 SV=1
Length = 705
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 17/176 (9%)
Query: 418 VFVAAHTSAGKTVVAEYAF-ALATKHCTRAVYTAPIKTISNQKYRDFSG----KFDVGLL 472
+ + T++GKT++AE + +A+Y P++ ++++KY F F VG+
Sbjct: 45 LLITTPTASGKTLMAELGMISHLLNKGGKAIYVTPLRALTSEKYSTFKDWEKLGFKVGVT 104
Query: 473 TGDVS-----LRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWE 527
+GD LR ++ T E L S+ A+ ++DI++ + DE HY+ND +RG V E
Sbjct: 105 SGDYDTDDPWLR-NFDIIVTTYEKLDSLWRHSAEWLKDIDYFVLDEFHYMNDGDRGPVVE 163
Query: 528 EVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYS 583
V + R I+ LSAT+ N + A W+ + T RPVPL+ + YS
Sbjct: 164 GVAVRAKRQGTILALSATIGNAKDVAKWLNAD------IVATNWRPVPLKEGVMYS 213
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 86/160 (53%), Gaps = 6/160 (3%)
Query: 745 SLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFD 804
+L+ RG+A HHAGL ++++IE F ++KV+ +T T A GVN PAR VV ++ +F+
Sbjct: 305 NLIVRGVAFHHAGLSKGLRDIIEASFRERIIKVITATPTLAAGVNLPARAVVIGDIYRFN 364
Query: 805 GR--EFRQLLPG-EYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLES 861
+ F +++ EY QM+GRAGR G D G ++L R ++ + + + +ES
Sbjct: 365 RKIVGFTEMISTMEYRQMSGRAGRPGYDNHGEAIILVRSKVEVDKVIDKYLHSDIEPIES 424
Query: 862 QFRLT---YIMILHLLRVEELKVEDMLKRSFAEFHSQKKL 898
+ + +L L+ E ED LK + K+L
Sbjct: 425 KLGAEGPFFSFVLSLIASEGEITEDRLKDYVEDTMLSKQL 464
>sp|Q5H9U9|DDX6L_HUMAN Probable ATP-dependent RNA helicase DDX60-like OS=Homo sapiens
GN=DDX60L PE=2 SV=2
Length = 1706
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 89/165 (53%), Gaps = 20/165 (12%)
Query: 743 VQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRK 802
+++L +RGI HH+ + KE +E+LF +G+++V+ +TET A+G++ P ++VVF
Sbjct: 1237 LKALAQRGIGYHHSSMYFKEKEFVEILFVKGLIRVVTATETLALGIHMPCKSVVF----- 1291
Query: 803 FDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQ 862
++ L Y QM+GRAGRRG D +G V +IP +K ++ S L Q
Sbjct: 1292 --AQDSVYLDALNYRQMSGRAGRRGQDLLGNVYFF---DIPLPK-IKRLLASSVPELRGQ 1345
Query: 863 FRLTYIMILHLLRV---------EELKVEDMLKRSFAEFHSQKKL 898
F L+ ++L L+ + + KV +LK S F ++ +
Sbjct: 1346 FPLSITLVLRLMLLASKGDDPEDAKAKVLSVLKHSLLSFKRRRAM 1390
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 20/174 (11%)
Query: 404 FQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAF--ALATKHCTRAVYTAPIKTISNQKYR 461
+Q+E + ++ +S + A TS+GKT + Y L VY AP K++ Q
Sbjct: 747 WQQELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLRESDVGVVVYVAPAKSLVGQVAA 806
Query: 462 DFSGKFD---------VGLLTGDVSLRPEASCLIMTT-----EILRSMLYRGADIIRDIE 507
+F G T D +C ++ T EIL +R + R I
Sbjct: 807 TVENRFTKTLPAGRTLCGAFTRDYC-HNVLNCQVLITVPECFEILLLAPHRQKWVER-IR 864
Query: 508 WVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQ 561
+VIFDEVHY+ WE +++++ ++LSAT+ N W+ KQ
Sbjct: 865 YVIFDEVHYLGREVGAKFWELLLVII--RCPFLVLSATINNPNLLTKWLQSVKQ 916
>sp|A3MSA1|HELS_PYRCJ Putative ski2-type helicase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=Pcal_0078 PE=3 SV=1
Length = 708
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Query: 746 LLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDG 805
L+ RG+A H+AGL V+ ++E F RG++KV+ ST T A GVN PAR VV + +FD
Sbjct: 299 LVARGVAFHNAGLELEVRRLVEDGFRRGLLKVVVSTTTLAAGVNLPARRVVVADYERFDP 358
Query: 806 REFRQLLPG-EYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQF 863
R+ +P EY QMAGRAGR GLD G V++ R + E ++ + G + S
Sbjct: 359 ALGREEIPVLEYRQMAGRAGRPGLDPYGEAVLVARSKGEAEYLMERYVRGQVEGVRSHI 417
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 94/182 (51%), Gaps = 18/182 (9%)
Query: 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFS---GKFDVG 470
+G SV + T++GK+++AE A A A+Y P+K ++ +K FS G VG
Sbjct: 38 DGRSVLLCTATASGKSLLAEVAAVKAGLEGRMALYAVPLKALAYEKLVHFSYYRGLVKVG 97
Query: 471 LLTGDVS----LRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVW 526
+ TGD E +++T E L S+L + + + V+ DE+HY+ D RG V
Sbjct: 98 VSTGDFDSDDRRLHEFDVVVVTYEKLDSLLRHRPNWLGLVGVVVVDEIHYLGDPRRGPVL 157
Query: 527 EEVIIMLPRHINI----VLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYY 582
E ++ L RH+ + + LSATV N E A W+G R+ ++ RPVPL +Y+
Sbjct: 158 ESIVAKL-RHLGLKTQFIGLSATVGNAGEVAAWLG------ARLVESSWRPVPLREGVYH 210
Query: 583 SG 584
G
Sbjct: 211 GG 212
>sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2
Length = 2590
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 86/164 (52%), Gaps = 16/164 (9%)
Query: 688 VVIFCFSKNHCDKLADGMS---------GIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLP 738
V++FC SK C+KLAD ++ L SE + + K + R LP
Sbjct: 340 VLLFCPSKKWCEKLADIIAREFYNLHHQAEGLVKPSECPPV-ILEQKELLEVMDQLRRLP 398
Query: 739 QIVR--VQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVV 796
+ +Q + G+A HHAGL +++IE F +G+++VL +T T + GVN PAR V+
Sbjct: 399 SGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVI 458
Query: 797 FDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRD 840
F GR L Y QM GRAGR+G+D +G +++C++
Sbjct: 459 IRT-PIFGGRPLDIL---TYKQMVGRAGRKGVDTVGESILICKN 498
Score = 41.6 bits (96), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 79/202 (39%), Gaps = 35/202 (17%)
Query: 415 GDSVFVAAHTSAGKTVVAE-YAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLL 472
G ++ +A TSAGKT+VAE + +A++ P +++ +K F +VG+
Sbjct: 108 GKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEVGIK 167
Query: 473 TGDVSLRPEASCLIMTTEILRSMLYRGADII-RDIE--------WVIFDEVHYVNDIERG 523
S + +I + R +I R IE V+ DE+H + D RG
Sbjct: 168 VDGYMGSTSPSRHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHRG 227
Query: 524 VVWEEVII------------------MLPRHINIVLLSATVPNTVEFADWIGRTKQKKIR 565
+ E ++ L + IV +SAT+PN A W+
Sbjct: 228 YLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWLN------AE 281
Query: 566 VTGTTKRPVPLEHCLYYSGEFY 587
+ T RPVPL + Y
Sbjct: 282 LYHTDFRPVPLLESVKVGNSIY 303
>sp|Q974S1|HELS_SULTO Putative ski2-type helicase OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=STK_05900 PE=3
SV=1
Length = 704
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 94/189 (49%), Gaps = 18/189 (9%)
Query: 405 QKEAIYY-LENGDSVFVAAHTSAGKTVVAEYAFA--LATKHCTRAVYTAPIKTISNQKYR 461
Q EAI L +G + V + T++GKT++AE L +K +A+Y P++ ++N+KY
Sbjct: 31 QSEAIRKGLLDGKRLLVTSPTASGKTLIAELGMINYLLSK-GGKAIYITPLRALTNEKYN 89
Query: 462 DFSGKFDVGLLTG--------DVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDE 513
F +G+ TG D + ++ T E L S+ A + ++ + + DE
Sbjct: 90 TFKDWETLGIKTGMTSGDYDTDDAWLENYDIIVTTYEKLDSLWRHKAKWLNEVSYFVLDE 149
Query: 514 VHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRP 573
HY+ND ERG E V I + ++ LSAT+ N E A+W+ + T RP
Sbjct: 150 FHYLNDPERGPTVESVAIRAKKRGIVLGLSATISNGKEIANWLNA------ELVATNWRP 203
Query: 574 VPLEHCLYY 582
VPL+ + Y
Sbjct: 204 VPLKEGIIY 212
Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 74/122 (60%), Gaps = 3/122 (2%)
Query: 745 SLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFD 804
+L+ RG+A HHAGL ++++IE F ++KV+ +T T A GVN PAR VV ++ +++
Sbjct: 304 NLVLRGVAYHHAGLSKGLRDIIESSFRDRILKVIVATPTLAAGVNLPARAVVIGDIYRYN 363
Query: 805 GR--EFRQLLP-GEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLES 861
+ + L+P +Y QM+GRAGR G D+ G VV+ R++ E + ++ +ES
Sbjct: 364 RKVVGYMDLIPVMDYKQMSGRAGRPGFDENGEAVVVVRNKREAEKVYERYLMSDVEPIES 423
Query: 862 QF 863
+
Sbjct: 424 KL 425
>sp|Q8TL39|HELS_METAC Putative ski2-type helicase OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3203 PE=3
SV=1
Length = 730
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 81/153 (52%), Gaps = 6/153 (3%)
Query: 689 VIFCFSKNHCDKLAD-GMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLL 747
++F S+ +C A S + T S+E E A L+ S+ + ++ S +
Sbjct: 247 LVFESSRKNCMGFAKKATSAVKKTLSAEDKE--KLAGIADEILENSETDTASVL--ASCV 302
Query: 748 RRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGRE 807
R G A HHAGL ++E++E F G VK++ ST T A G+N PAR V+ + R++
Sbjct: 303 RAGTAFHHAGLTSPLRELVETGFREGYVKLISSTPTLAAGLNLPARRVIIRSYRRYSSDS 362
Query: 808 FRQLLPG-EYTQMAGRAGRRGLDKIGTVVVLCR 839
Q +P EY QMAGRAGR LD G V+L +
Sbjct: 363 GMQPIPVLEYKQMAGRAGRPRLDPYGEAVLLAK 395
Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 35/231 (15%)
Query: 394 ALDFPFELDNF------------QKEAIYY-LENGDSVFVAAHTSAGKTVVAEYAFALAT 440
+LD P E+ F Q EA+ L G ++ A T++GKT++AE A +
Sbjct: 5 SLDLPDEVKRFYENSGIPELYPPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSV 64
Query: 441 KHCTRAVYTAPIKTISNQKYR---DFSG-KFDVGLLTGDVSLRPEA----SCLIMTTEIL 492
+A+Y P++ ++++K+R DFS VG+ TGD R E ++ T+E
Sbjct: 65 LAGGKALYIVPLRALASEKFRRFQDFSELGIRVGISTGDYDRRDEGLGINDIIVATSEKT 124
Query: 493 RSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHIN----IVLLSATVPN 548
S+L +++I V+ DEVH ++ +RG E + L R +N I+ LSATV N
Sbjct: 125 DSLLRNETAWMQEISVVVVDEVHLIDSADRGPTLEVTLAKL-RKMNPFCQILALSATVGN 183
Query: 549 TVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCEN-EAFIPQ 598
E A W+ + + RP L +++ G F+ C++ E I Q
Sbjct: 184 ADELAAWL------DAELVLSEWRPTDLMEGVFFDGTFF--CKDKEKLIEQ 226
>sp|Q8PZR7|HELS_METMA Putative ski2-type helicase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0425 PE=3 SV=1
Length = 730
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 83/153 (54%), Gaps = 6/153 (3%)
Query: 689 VIFCFSKNHCDKLAD-GMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLL 747
++F S+ +C A +S + T S+E E A ++ S+ ++ ++ + +
Sbjct: 247 LVFESSRKNCMGFAKKAVSAVKKTLSNEDRE--TLAGIADEIIENSETDVSSVL--ATCV 302
Query: 748 RRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGRE 807
R G A HHAGL ++E++E F G +K++ ST T A G+N PAR V+ + R++
Sbjct: 303 RSGTAFHHAGLTTPLRELVENGFREGRIKIISSTPTLAAGLNLPARRVIIRSYRRYSSDS 362
Query: 808 FRQLLPG-EYTQMAGRAGRRGLDKIGTVVVLCR 839
Q +P EY QMAGRAGR LD G V+L +
Sbjct: 363 GMQPIPVLEYKQMAGRAGRPRLDPYGEAVLLAK 395
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 103/218 (47%), Gaps = 30/218 (13%)
Query: 394 ALDFPFELDNF------------QKEAIYY-LENGDSVFVAAHTSAGKTVVAEYAFALAT 440
+LD P E+ F Q EA+ L G ++ A T++GKT++AE A +
Sbjct: 5 SLDLPDEIKRFYENSGILELYPPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSV 64
Query: 441 KHCTRAVYTAPIKTISNQKYRDFSG----KFDVGLLTGDVSLRPEA----SCLIMTTEIL 492
+ +A+Y P++ ++++K+R F VG+ TGD R E ++ T+E
Sbjct: 65 LNGGKALYIVPLRALASEKFRRFQEFSVLGMRVGISTGDYDRRDEGLGINDIIVATSEKT 124
Query: 493 RSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPR---HINIVLLSATVPNT 549
S+L +++I V+ DEVH ++ +RG E + L R ++ LSATV N
Sbjct: 125 DSLLRNETAWMQEISVVVADEVHLIDSPDRGPTLEITLSKLRRMNPSCQVLALSATVGNA 184
Query: 550 VEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFY 587
E A W+ + + RP L ++Y+G FY
Sbjct: 185 DELAAWL------DAELVLSEWRPTDLMEGVFYNGIFY 216
>sp|Q465R3|HELS_METBF Putative ski2-type helicase OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3508 PE=3 SV=1
Length = 729
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 747 LRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGR 806
+R G A HHAGL ++E++E F G +K++ ST T A G+N PAR V+ N R++
Sbjct: 302 IRSGTAFHHAGLTTPLRELVEDGFRAGRIKLISSTPTLAAGLNLPARRVIIRNYRRYSSE 361
Query: 807 EFRQLLPG-EYTQMAGRAGRRGLDKIGTVVVLCR 839
+ Q +P EY QMAGRAGR LD G V++ +
Sbjct: 362 DGMQPIPVLEYKQMAGRAGRPRLDPYGEAVLVAK 395
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 32/219 (14%)
Query: 394 ALDFPFELDNF------------QKEAIYY-LENGDSVFVAAHTSAGKTVVAEYAFALAT 440
+LD P E+ F Q EA+ L G ++ A T++GKT++AE A +
Sbjct: 5 SLDLPDEVKQFYLNSGIMELYPPQAEAVEKGLLEGRNLLAAIPTASGKTLLAELAMLKSI 64
Query: 441 KHCTRAVYTAPIKTISNQKYRDFSG----KFDVGLLTGDVSLRPEA----SCLIMTTEIL 492
+A+Y P++ ++++K+R F VG+ TGD LR E ++ T+E
Sbjct: 65 LAGGKALYIVPLRALASEKFRRFREFSELGIRVGISTGDYDLRDEGLGVNDIIVATSEKT 124
Query: 493 RSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHIN----IVLLSATVPN 548
S+L +++I V+ DEVH ++ +RG E + L R +N I+ LSATV N
Sbjct: 125 DSLLRNETVWMQEISVVVADEVHLIDSPDRGPTLEVTLAKL-RKMNPSCQILALSATVGN 183
Query: 549 TVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFY 587
E A W+ + + + RP L ++++G FY
Sbjct: 184 ADELAVWL------EAELVVSEWRPTELLEGVFFNGTFY 216
>sp|Q12WZ6|HELS_METBU Putative ski2-type helicase OS=Methanococcoides burtonii (strain
DSM 6242) GN=Mbur_1102 PE=3 SV=1
Length = 760
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 747 LRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGR 806
+R+G+A HHAGL ++++E F + ++KV+ ST T A G+N PAR V+ + R+FD
Sbjct: 302 IRKGVAFHHAGLNSNHRKLVENGFRQNLIKVISSTPTLAAGLNLPARRVIIRSYRRFDSN 361
Query: 807 EFRQLLPG-EYTQMAGRAGRRGLDKIGTVVVLCR 839
Q +P EY QMAGRAGR LD G V+L +
Sbjct: 362 FGMQPIPVLEYKQMAGRAGRPHLDPYGESVLLAK 395
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 405 QKEAIYY-LENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDF 463
Q EAI L ++ A T++GKT++AE A A + +A+Y P++ ++++K+ F
Sbjct: 28 QAEAIEMGLLEKKNLLAAIPTASGKTLLAELAMIKAIREGGKALYIVPLRALASEKFERF 87
Query: 464 SG----KFDVGLLTGDVSLRPE----ASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVH 515
VG+ TGD+ R + ++ T+E S+L G + +I V+ DE+H
Sbjct: 88 KELAPFGIKVGISTGDLDSRADWLGVNDIIVATSEKTDSLLRNGTSWMDEITTVVVDEIH 147
Query: 516 YVNDIERGVVWEEVIIMLPR---HINIVLLSATVPNTVEFADWIG 557
++ RG E I L R + +V LSATV N E ADW+G
Sbjct: 148 LLDSKNRGPTLEVTITKLMRLNPDVQVVALSATVGNAREMADWLG 192
>sp|A6UN73|HELS_METVS Putative ski2-type helicase OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=Mevan_0030 PE=3 SV=1
Length = 751
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 110/221 (49%), Gaps = 31/221 (14%)
Query: 412 LENGDSVFVAAHTSAGKTVVAEYA---------FALATKHCTRAVYTAPIKTISNQKYRD 462
L+ + + T++GKT++ E A + L K + ++ P+K ++++K+ +
Sbjct: 29 LDKSKNFLICIPTASGKTLIGEMALLNHVLDENYNLTGK---KGLFIVPLKALASEKFDE 85
Query: 463 FSGKFD-----VGLLTGDVSLRPEAS---CLIMTTEILRSMLYRGADIIRDIEWVIFDEV 514
F K++ VG+ GD + + S +I T+E L S++ + I+D+ + DE+
Sbjct: 86 FQKKYETYGIKVGMSIGDYDTKEDLSKYNIIITTSEKLDSLMRHNIEWIKDLSLAVIDEI 145
Query: 515 HYVNDIERGVVWEEVIIMLPRHIN--IVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKR 572
H + D ERG EVI+ ++IN IV LSATV N E A+W+ ++ R
Sbjct: 146 HLIGDNERGGTL-EVILTKLKNINAQIVGLSATVGNPEEIANWLNA------KLVTDEWR 198
Query: 573 PVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLS 613
PV L+ +Y E + N+ + +KA K + R NL+
Sbjct: 199 PVELKKGIYLENEINYI-NNQDSQKKSFKAVK-SISRNNLT 237
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 3/153 (1%)
Query: 689 VIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLR 748
+IFC SK + + + S +E +++ ++ S L+ + ++
Sbjct: 251 LIFCNSKRNAVGESKKHNLTKYLSKAELNDLNSISEEILSILETPTETCKSL---SECIK 307
Query: 749 RGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREF 808
+G+A HHAGL ++ +E F V+KV+ T T + G+N P R + ++R++
Sbjct: 308 KGVAFHHAGLTYQHRKAVEEGFRNKVIKVICCTPTLSAGLNLPCRRAIIRDIRRYSQNGL 367
Query: 809 RQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDE 841
+ E Q GRAGR GLD G ++L ++E
Sbjct: 368 IDIPKLEIHQCIGRAGRPGLDPYGEGIILAKNE 400
>sp|Q3IU46|HELS_NATPD Putative ski2-type helicase OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=NP_0492A PE=3 SV=1
Length = 747
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 91/178 (51%), Gaps = 17/178 (9%)
Query: 416 DSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSG----KFDVGL 471
+S+ + T++GKT+VA+ A A A+Y P++ ++++K +F+ VG+
Sbjct: 41 ESLVASVPTASGKTLVAQLAMLSAIDRGGTALYIVPLRALASEKREEFAAFEEYGLSVGV 100
Query: 472 LTGDVSLRPE----ASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWE 527
TG E ++ T+E + S++ GA I D++ V+ DEVH V+D RG E
Sbjct: 101 TTGSYEDTGEWLADKDIIVATSEKVDSLVRNGAPWIDDLDCVVADEVHLVDDEHRGPTLE 160
Query: 528 EVIIMLPR---HINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYY 582
+ L R ++ +V LSATV N E A+W+ + ++ RP+ L ++Y
Sbjct: 161 VTLAKLRRVNPNLQVVALSATVGNAGEMAEWL------DAELVDSSWRPIELRKGVHY 212
>sp|Q9P7T8|YIW2_SCHPO Uncharacterized helicase C694.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC694.02 PE=3 SV=1
Length = 1717
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 19/176 (10%)
Query: 399 FELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAF--ALATKHCTRAVYTAPIKTIS 456
F+ D +Q+E + L+ +SVFV A TS+GKT ++ YA L +Y AP K +
Sbjct: 734 FDPDEWQRETLDILDRDESVFVVAPTSSGKTFISFYAMEKVLRDNDDGVVIYVAPTKALV 793
Query: 457 NQ----------KYRDFSGKFDVGLLTGDVSLRPEASCLIMTT--EILRSMLYRGA---D 501
NQ K+ +G+ + T D + +C ++ T +L+SML + A
Sbjct: 794 NQLSAEVYARFNKHYPHAGQTVWSVYTRDYRINNPTNCQVLITVPHVLQSMLLQPALANA 853
Query: 502 IIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIG 557
I +IFDE+H + +E G+V E+++++ P IV LSATV N EF W+
Sbjct: 854 WCPKIRRIIFDEIHCIGQMEDGLVEEQLLLLAP--CPIVALSATVGNPQEFQVWLS 907
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 22/148 (14%)
Query: 735 RNLPQIVRVQSL-------LRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMG 787
R+L + R Q++ L RGI IHH+GL ++++E+LF G + V+ +T T ++G
Sbjct: 1202 RDLEALRRRQAVPEWYVDALYRGIGIHHSGLNRRYRQIVEVLFRCGQLTVVIATRTLSLG 1261
Query: 788 VNAPARTVVF--DNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGE 845
+N P RTVVF D+L QL + Q AGRAGRRG D +G V L +P
Sbjct: 1262 INMPCRTVVFLGDSL---------QLNALNFHQAAGRAGRRGFDLLGHVGFLG---VPLH 1309
Query: 846 SDLKHIIVGSATRLESQFRLTYIMILHL 873
+ ++ ++ QF LT ++L L
Sbjct: 1310 K-IYRLLTTKLWDIQGQFPLTTSLVLQL 1336
>sp|O73946|HELS_PYRFU Putative ski2-type helicase OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0677 PE=1 SV=1
Length = 720
Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 89/179 (49%), Gaps = 15/179 (8%)
Query: 415 GDSVFVAAHTSAGKTVVAEYAFA-LATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGL-- 471
G + ++ T++GKT++AE A +AVY P+K ++ +K+++F +GL
Sbjct: 39 GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRV 98
Query: 472 --LTGDVSLRPE----ASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVV 525
TGD + E +I T E S+L G+ I+D++ ++ DE+H + +RG
Sbjct: 99 AMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGAT 158
Query: 526 WEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSG 584
E ++ + I+ LSAT+ N E A+W+ + + RPV L ++Y G
Sbjct: 159 LEVILAHMLGKAQIIGLSATIGNPEELAEWLN------AELIVSDWRPVKLRRGVFYQG 211
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 7/175 (4%)
Query: 689 VIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLR 748
+IF + +++A +S + S K EIR A + L S P ++ +R
Sbjct: 241 LIFVNMRRKAERVALELSK-KVKSLLTKPEIR-----ALNELADSLEENPTNEKLAKAIR 294
Query: 749 RGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREF 808
G+A HHAGL + ++E F +G++K + +T T + G+N PA V+ ++ ++
Sbjct: 295 GGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGM 354
Query: 809 RQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQF 863
++ E QM GRAGR D++G +++ + P E + H I G +L SQ
Sbjct: 355 ERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREV-MNHYIFGKPEKLFSQL 408
>sp|O26901|HELS_METTH Putative ski2-type helicase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_810 PE=3 SV=1
Length = 690
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 90/183 (49%), Gaps = 15/183 (8%)
Query: 400 ELDNFQKEAIY--YLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISN 457
EL+ Q+ AI YLE+ D+ +A T++GKT++ A R +YT P+ +I N
Sbjct: 21 ELNPAQRSAIEAGYLESEDNYIIAIPTASGKTLLGIIAALKTVMEGGRVIYTVPLLSIQN 80
Query: 458 QKYRDFSGKFDVGLLTGDVSLRPEASCL-IMTTEILRSMLYRGADIIRDIEWVIFDEVHY 516
+K ++F + G+ G P S + +M E S+ +I+R+++ +I DE H
Sbjct: 81 EKIKEFRKLEEHGIRVGK---DPRTSDIAVMVFESFDSLTRFSWNILREVDLLIVDEFHM 137
Query: 517 VNDIERGVVWEEVII---MLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRP 573
+ + RG V E I L + IV LSAT+ N E A W+ RV RP
Sbjct: 138 IGEYTRGPVIESAITRARTLNPSVRIVALSATLSNMDEIAGWL------DARVVEHDYRP 191
Query: 574 VPL 576
VPL
Sbjct: 192 VPL 194
Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%)
Query: 741 VRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNL 800
+++ L GIA HHAGL +E+IE F G + ++ +T + GVN P+RTVV +
Sbjct: 283 LKLAECLEAGIAFHHAGLFNRQREIIEDEFRDGNILMITATPSLMYGVNLPSRTVVIRDY 342
Query: 801 RKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLE 860
++ + R++ +Y QM+GRAGR D G ++ R ++ I G R
Sbjct: 343 TRWTSQGPRRIPVFDYEQMSGRAGRPQYDDAGYSYLIARSHDEAMDLEEYYIRGEVERTT 402
Query: 861 SQF 863
S+
Sbjct: 403 SRI 405
>sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1
PE=2 SV=2
Length = 1435
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 55/98 (56%)
Query: 742 RVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLR 801
+++ +L+ G A HHAG+ ++V+E F G + VLF+T T AMGVN PA VV +
Sbjct: 574 KLRDILKDGAAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTM 633
Query: 802 KFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCR 839
+ G F + + QM GRAGR D T V++ R
Sbjct: 634 HYAGGLFEEYSETDILQMIGRAGRPQFDTTATAVIMTR 671
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 99/217 (45%), Gaps = 36/217 (16%)
Query: 396 DFPFELDNFQKEAIYYLENGDSVFV-AAHTSAGKTVVAEYAFALATKHC------TRAVY 448
+FP+ + Q +A L D FV A T +GKTVV E A + VY
Sbjct: 277 EFPY-FNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWLNIKIVY 335
Query: 449 TAPIKTISNQKYRDFSGKFD-VGL----LTGDVSL----RPEASCLIMTT-EILRSML-- 496
APIK + +Q++ D+ KF +GL LTGD + + + +IMTT E SM
Sbjct: 336 MAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRK 395
Query: 497 YRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPR---------------HINIVL 541
+R +++ + + DEVH V D RG E V+ + + V
Sbjct: 396 WRDNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKTVQSVSQTLKNTSTAIPMRFVA 455
Query: 542 LSATVPNTVEFADWIGRTKQKKIRV-TGTTKRPVPLE 577
+SAT+PN + A+W+ ++ + + + RPV L+
Sbjct: 456 VSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQ 492
>sp|Q5UYM9|HELS_HALMA Putative ski2-type helicase OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rrnAC2876
PE=3 SV=1
Length = 799
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 102/208 (49%), Gaps = 19/208 (9%)
Query: 388 ELVPD-LALDFPFELDNFQKEAIYY-LENGDSVFVAAHTSAGKTVVAEYAFALATKHCTR 445
E +PD L D EL Q EA+ + G+++ + T++GKT++AE A + +
Sbjct: 11 EWLPDHLRDDGIEELYPPQAEAVEAGVTEGENLVASIPTASGKTLIAELAMLSSVARGGK 70
Query: 446 AVYTAPIKTISNQKYRDFSG----KFDVGLLTGDVSLR----PEASCLIMTTEILRSMLY 497
A+Y P++ ++++K DF D+G+ TG+ + ++ T+E + S++
Sbjct: 71 ALYIVPLRALASEKQADFEEFEQYGLDIGVSTGNYESEGGWLADKDIVVATSEKVDSLVR 130
Query: 498 RGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPR---HINIVLLSATVPNTVEFAD 554
A I D+ V+ DEVH V+D ERG E + L R + V LSAT+ N A
Sbjct: 131 NDAPWIEDLTCVVTDEVHLVDDGERGPTLEVTLAKLRRLNPDLQTVALSATIGNAEALAT 190
Query: 555 WIGRTKQKKIRVTGTTKRPVPLEHCLYY 582
W+ + + RP+ L+ ++Y
Sbjct: 191 WL------DAGLVDSDWRPIDLQKGVHY 212
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 750 GIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGRE-- 807
G A HHAGL +E++E F +VKV+ +T T A GVN P+R VV + R++DG
Sbjct: 308 GAAFHHAGLSRGHRELVEDAFRDRLVKVVCATPTLAAGVNTPSRRVVVRDWRRYDGSAGG 367
Query: 808 FRQLLPGEYTQMAGRAGRRGLDKIGTVVVLC 838
L E QM GRAGR GLD G V++
Sbjct: 368 MAPLSVLEVHQMMGRAGRPGLDPYGEAVLIA 398
>sp|Q8IY21|DDX60_HUMAN Probable ATP-dependent RNA helicase DDX60 OS=Homo sapiens GN=DDX60
PE=1 SV=3
Length = 1712
Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 17/167 (10%)
Query: 709 DLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEM 768
D T + +K+ K F R+K + +++L RGI HH+ + K+++E+
Sbjct: 1223 DCTYADQKAVDTETLQKVFGRVKFERKG----EELKALAERGIGYHHSAMSFKEKQLVEI 1278
Query: 769 LFCRGVVKVLFSTETFAMGVNAPARTVVF-DNLRKFDGREFRQLLPGEYTQMAGRAGRRG 827
LF +G ++V+ +T T A+GVN P ++VVF N D +R QM+GRAGRRG
Sbjct: 1279 LFRKGYLRVVTATGTLALGVNMPCKSVVFAQNSVYLDALNYR--------QMSGRAGRRG 1330
Query: 828 LDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQFRLTYIMILHLL 874
D +G V +IP + +I + L F L+ ++L L+
Sbjct: 1331 QDLMGDVYFF---DIPF-PKIGKLIKSNVPELRGHFPLSITLVLRLM 1373
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 18/174 (10%)
Query: 402 DNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAV--YTAPIKTISNQK 459
D +Q+E + ++ +S + A TS+GKT + Y K V Y AP K + NQ
Sbjct: 765 DTWQRELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLKESDDGVVVYVAPTKALVNQV 824
Query: 460 YRDFSGKFDVGLLTGDV-------SLRPEA-SCLIMTT-----EILRSMLYRGADIIRDI 506
+F L +G+V R +A +C ++ T EIL +R + ++ I
Sbjct: 825 AATVQNRFTKNLPSGEVLCGVFTREYRHDALNCQVLITVPACFEILLLAPHR-QNWVKKI 883
Query: 507 EWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTK 560
+VIFDEVH + +WE +++M+ + LSAT+ N +W+ K
Sbjct: 884 RYVIFDEVHCLGGEIGAEIWEHLLVMI--RCPFLALSATISNPEHLTEWLQSVK 935
>sp|Q0W6L1|HELS_UNCMA Putative ski2-type helicase OS=Uncultured methanogenic archaeon
RC-I GN=UNCMA_22030 PE=3 SV=1
Length = 740
Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 25/196 (12%)
Query: 405 QKEAIYY-LENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDF 463
Q EAI L +G ++ A T++GKT++AE A + +A+Y P+K ++++KY F
Sbjct: 28 QAEAIRQGLLDGKNLLAAIPTASGKTLLAEMAMLKSIAEGGKAIYIVPLKALASEKYDRF 87
Query: 464 ---------SGKFDVGLLTGDVSLRP----EASCLIMTTEILRSMLYRGADIIRDIEWVI 510
VG+ TGD R E ++ T+E S+L GA + + V+
Sbjct: 88 LEFSKLPIKPDGVKVGIATGDFDSRDEYLGEKDIIVATSEKTDSLLRNGASWLSGLSVVV 147
Query: 511 FDEVHYVNDIERGVVWEEVIIMLPRHINIVL----LSATVPNTVEFADWIGRTKQKKIRV 566
DEVH ++ RG E + L R IN+ L LSAT+ N A W+ +
Sbjct: 148 ADEVHLIDSPNRGPTLEVTLAKL-RKINVNLQILALSATIGNAKALAKWMDAA------L 200
Query: 567 TGTTKRPVPLEHCLYY 582
+ RP L+ ++Y
Sbjct: 201 VQSEWRPTTLKEGVFY 216
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 750 GIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFR 809
G+A HHAGL + ++E F + ++KV+ T T A G+N PAR V+ + ++FD
Sbjct: 310 GVAFHHAGLKGEHRRIVEDGFRQNILKVIACTPTLAAGLNLPARRVIIRDYKRFDVNYGS 369
Query: 810 QLLPG-EYTQMAGRAGRRGLDKIGTVVVLCRD 840
+P EY QMAGRAGR LD G V++ ++
Sbjct: 370 VPIPVLEYKQMAGRAGRPRLDPYGEAVLIAKN 401
>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like
OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1
Length = 2237
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 12/180 (6%)
Query: 688 VVIFCFSKNHCDKLADGMSGIDLTSSS-EKSEIRVFCDKAFSR--LKGSDRNLPQIVRVQ 744
++IF S+ K +G DL + E I + SR L+ + Q ++
Sbjct: 791 ILIFVHSRRETAK-----TGKDLRDRAVEDQSIDRYIRDPASREILRATASKQIQNAELK 845
Query: 745 SLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFD 804
LL GI IHHAGL + ++E LF ++VL ST T A GVN PA TV+ + ++
Sbjct: 846 DLLPYGIGIHHAGLSRSDRSLVEDLFGDNRIQVLISTATLAWGVNLPAHTVIIKGTQIYN 905
Query: 805 GRE-FRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQF 863
+ + +L P + TQM GRAGR DK G +++ E ++ + +ESQF
Sbjct: 906 PEKGWCELSPLDVTQMLGRAGRPPFDKEGEGIIITSQH---ELQFYLSLLNTQLSIESQF 962
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 97/191 (50%), Gaps = 29/191 (15%)
Query: 413 ENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRA--VYTAPIKTISNQKYRDFSGKFDV- 469
++ D+ F++A T++GKTV AE A K +A VY AP++ +++ + +D+S KF V
Sbjct: 1411 QSNDNAFISAPTNSGKTVCAEIALIRCFKQNPKAKVVYLAPMQDLASVRLKDWSNKFGVK 1470
Query: 470 ---GL----LTGDVSLRP---EASCLIMTT----EILRSMLYRGADIIRDIEWVIFDEVH 515
GL LTGD + S +I+T +IL S ++ ++ I +I DE+H
Sbjct: 1471 SPFGLVVSDLTGDAVTDNKILDRSNIIVTNCEKWDIL-SRKWKQRKALQSINLLIVDELH 1529
Query: 516 YVNDIERGVVWEEVIIMLPRHIN--------IVLLSATVPNTVEFADWIGRTKQKKIRVT 567
+ E G E+++ R+I+ ++ LS+++ N + WIG T Q
Sbjct: 1530 LIGG-EYGPTM-EIVVSRMRYISTQTGNALRVIALSSSIANARDLVLWIGATPQTCYNFH 1587
Query: 568 GTTKRPVPLEH 578
RP+P+E+
Sbjct: 1588 PNV-RPIPVEY 1597
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 20/126 (15%)
Query: 747 LRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGV-NAPARTVVFDNLRKFDG 805
L+ G+A +H GL + V+E+LF G ++VL +T + A + N A+ VV + + G
Sbjct: 1686 LQMGVAFYHDGLTERERRVVEILFRSGSIRVLIATHSVAWLLDNVFAQLVVIMGTQLYQG 1745
Query: 806 REFRQL-LP-GEYTQMAGRAGRR---GL--DKIGTVVVLCR------------DEIPGES 846
++ R + P + QM GRAG++ G+ +K+ V++LC + +P ES
Sbjct: 1746 KDIRYIDYPINDILQMIGRAGKQEGGGVISNKVAKVLLLCHAPKKEYYKMFLNEPLPVES 1805
Query: 847 DLKHII 852
L H +
Sbjct: 1806 HLDHCL 1811
>sp|A2RUV5|HFM1_XENTR Probable ATP-dependent DNA helicase HFM1 OS=Xenopus tropicalis
GN=hfm1 PE=2 SV=1
Length = 1336
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 11/141 (7%)
Query: 742 RVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLR 801
+++ +L+ G+ HHAG+ ++VIE F G + VLF+T T AMGVN PA V+ +
Sbjct: 443 KLRDVLQYGVGYHHAGVDISDRKVIENSFLIGDLPVLFTTSTLAMGVNLPAHLVIVKSTM 502
Query: 802 KFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLES 861
+ F++ + QM GRAGR D T V++ R + + H++ G+ T +ES
Sbjct: 503 HYVSGMFQEYSETDILQMIGRAGRPQFDSTATAVIMTR--LSTKEKYVHMLDGADT-IES 559
Query: 862 QFRLTYIMILHLLRVEELKVE 882
LH VE L E
Sbjct: 560 S--------LHKHLVEHLNAE 572
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 92/196 (46%), Gaps = 35/196 (17%)
Query: 396 DFPFELDNFQKEAIYYLENGDSVFV-AAHTSAGKTVVAEYAFALATKHC------TRAVY 448
+FP+ + Q +A+ +L D FV A T +GKTV+ E A + VY
Sbjct: 146 EFPY-FNYIQSKALEHLLYSDRNFVLCAPTGSGKTVIFELAIIRLLMQVPMPWTNVKIVY 204
Query: 449 TAPIKTISNQKYRDFSGKFD-VGL----LTGDVSL----RPEASCLIMTT-EILRSMLYR 498
APIK + Q+Y D+ KF VGL LTGD + + + +IMTT E SM +
Sbjct: 205 MAPIKALCGQRYDDWKAKFGPVGLNCKELTGDTEMDDLFEIQHAHIIMTTPEKWDSMTRK 264
Query: 499 GAD--IIRDIEWVIFDEVHYVNDIERGVVWEEVI-----IMLPRHIN----------IVL 541
D +++ + + DEVH + + RG E V+ I H++ V
Sbjct: 265 WKDNTLVQLVRLFLIDEVHILKEENRGATLEVVVSRMKTIYSLSHLSEDRKAFIPMRFVA 324
Query: 542 LSATVPNTVEFADWIG 557
+SAT+PN + ADW+
Sbjct: 325 VSATIPNVEDIADWLS 340
>sp|Q2VPA6|HELQ_MOUSE Helicase POLQ-like OS=Mus musculus GN=Helq PE=2 SV=2
Length = 1069
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 105/439 (23%), Positives = 173/439 (39%), Gaps = 94/439 (21%)
Query: 424 TSAGKTVVAEYAFALATKHCTR--AVYTAPIKTISNQKYRDFSG-KFDVGLLTGD----- 475
TS GKT+VAE L C + + P I +K S ++G +
Sbjct: 320 TSGGKTLVAEI-LMLQELLCRQKDVLMILPYVAIVQEKISSLSSFGIELGFFVEEYAGSK 378
Query: 476 -----VSLRPEASCLIMTTEILRSMLYRGADIIR--DIEWVIFDEVHYVNDIERGVVWEE 528
+ R + S I T E S++ + R + V+ DE+H + + RG + E
Sbjct: 379 GRFPPIKRREKKSLYIATIEKAHSLVNALIETSRLSTLGLVVVDELHMIGEGSRGAILEM 438
Query: 529 V---IIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGE 585
++ + I+ +SAT+ N + ++ K + RPV L+ E
Sbjct: 439 TLAKVLYTSKTTQIIGMSATLNNVEDLQAFL------KAEYYTSQFRPVELK-------E 485
Query: 586 FYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQ 645
F KV D + AA G T S + + A K+ P+R
Sbjct: 486 FLKV--------------NDTIYEVDSQAADGMTFSRLLS---YKYSEALKKMDPDR--- 525
Query: 646 NKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGM 705
V++ +I S ++FC SK +C+ +A+ +
Sbjct: 526 -----------------------LVALVTEVIPNYS------CLVFCPSKKNCENVAEML 556
Query: 706 SGI---DLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIV 762
D + EK + V K+ + G+ + P + R GIA HH+GL
Sbjct: 557 CKFLSKDYLNHREKEKCEVI--KSLRNI-GNGKVCPVLKRTVPF---GIAYHHSGLTSEE 610
Query: 763 KEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGR 822
++++E + GV+ +L T T A GVN PAR V+ + F L +Y QM GR
Sbjct: 611 RKLLEEAYSTGVLCLLTCTSTLAAGVNLPARRVILRA--PYVANTF--LKRNQYKQMVGR 666
Query: 823 AGRRGLDKIGTVVVLCRDE 841
AGR G+D G ++L +++
Sbjct: 667 AGRAGIDTAGESILLLQEK 685
>sp|Q58524|HELS_METJA Putative ski2-type helicase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1124 PE=3 SV=1
Length = 1195
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 104/215 (48%), Gaps = 26/215 (12%)
Query: 384 DRFHELVPDLALDFPFELDNFQKEAIY--YLENGDSVFVAAHTSAGKTVVAEYAFAL--- 438
D+ E++ D + EL QK+A+ L+ + ++ T++GKT++ E A
Sbjct: 2 DKILEILKDFGI---VELRPPQKKALERGLLDKNKNFLISIPTASGKTLIGEMALINHLL 58
Query: 439 -ATKHCT--RAVYTAPIKTISNQKYRDFSGKFD-----VGLLTGDVSLRPEAS---CLIM 487
K+ T + ++ P+K ++++KY +F K++ + L GD + S +I
Sbjct: 59 DGNKNPTNKKGIFIVPLKALASEKYEEFKSKYERYGLRIALSIGDYDEDEDLSKYHLIIT 118
Query: 488 TTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPR-HINIVLLSATV 546
T E L S+ D I D+ V+ DE+H +ND RG E ++ L ++ I+ LSAT+
Sbjct: 119 TAEKLDSLWRHKIDWINDVSVVVVDEIHLINDETRGGTLEILLTKLKEFNVQIIGLSATI 178
Query: 547 PNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLY 581
N E A+W+ + RPV L+ +Y
Sbjct: 179 GNPDELAEWLNA------ELIVDDWRPVELKKGIY 207
Score = 40.8 bits (94), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 785 AMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDE 841
+ G+N P R + +L +F + R + E Q GRAGR GLD G +++ +++
Sbjct: 839 SAGLNLPCRRAIVKDLTRFTNKGMRYIPIMEIQQCIGRAGRPGLDPYGEGIIVAKND 895
>sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=brr2 PE=1 SV=1
Length = 2176
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 69/135 (51%), Gaps = 15/135 (11%)
Query: 733 SDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPA 792
SD NL + LL G AIHHAG+ ++ E LF G ++VL ST T A GVN PA
Sbjct: 809 SDENL------KDLLPYGFAIHHAGMRREDRQTSEDLFADGTIQVLVSTATLAWGVNLPA 862
Query: 793 RTVVFDNLRKFDGRE--FRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKH 850
TV+ + + + + +L P + QM GRAGR D G ++ I S+L++
Sbjct: 863 HTVIIKGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQFDTYGEGII-----ITAHSELQY 917
Query: 851 I--IVGSATRLESQF 863
++ +ESQF
Sbjct: 918 YLSLMNQQLPIESQF 932
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 42/212 (19%)
Query: 416 DSVFVAAHTSAGKTVVA--------------EYAFALATKHCTRAVYTAPIKTISNQKYR 461
+++ + A T AGKT VA + +F L + VY AP+K + +
Sbjct: 536 ENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQN---FKIVYIAPLKALVQEMVN 592
Query: 462 DFSGKFD-----VGLLTGDVSLRPEA---SCLIMTTEILRSMLYRGAD---IIRDIEWVI 510
+FS + V LTGD L + + +I+TT ++ R A+ + + VI
Sbjct: 593 NFSKRLTPYNIRVAELTGDSQLTKQQISETQIIVTTPEKWDIITRKANDLSYVNLVRLVI 652
Query: 511 FDEVHYVNDIERGVVWEEVIIMLPRH-------INIVLLSATVPNTVEFADWIGRTKQKK 563
DEVH ++D ERG V E ++ + RH + +V LSAT+PN + A ++ +K
Sbjct: 653 IDEVHLLHD-ERGPVLESIVARIFRHQEETLEQVRLVGLSATLPNYTDVASFLHVDPKKG 711
Query: 564 IRVTGTTKRPVPLEHCLYYSGEFYKVCENEAF 595
+ +T RP PL+ EF + E F
Sbjct: 712 LFYFDSTYRPCPLKQ------EFIGITEKTPF 737
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 90/186 (48%), Gaps = 24/186 (12%)
Query: 413 ENGDSVFVAAHTSAGKTVVAEYAFA--LATKHCTRAVYTAPIKTISNQKYRDFSGKF-DV 469
+ DSVF+ A +GKTV AE A + + AVY API+ I +++Y ++ GKF D+
Sbjct: 1378 KTNDSVFIGAPNGSGKTVCAELALLHHWSQEDYGTAVYIAPIQEIVDRRYEEWYGKFSDL 1437
Query: 470 G------LLTG----DVSLRPEASCLIMTTEILRSM--LYRGADIIRDIEWVIFDEVHYV 517
G LTG D+ L A + T S+ +R I+ +++ I DE+ +
Sbjct: 1438 GDGKVLVKLTGERSQDLKLIQVADLIFCTPSQWDSLSKRWRSMRSIQKVDFYICDELQLL 1497
Query: 518 NDIERGVVWEEVI-------IMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTT 570
G ++E VI + L ++I +V LS +V N + +W+G + Q +
Sbjct: 1498 GGF-YGPLYEIVISRIRYMAVQLEKNIRVVGLSVSVANARDLGEWLGTSPQCIFNFS-PK 1555
Query: 571 KRPVPL 576
RP PL
Sbjct: 1556 DRPNPL 1561
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 727 FSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAM 786
FS ++ N + +Q L+ GIA + +++ L+ G++KVL ++
Sbjct: 1628 FSLMENEAFNKVEDAALQQSLKHGIAYISEITSSNDQNIVQYLYRHGLIKVLIASRDVIY 1687
Query: 787 GVNAPARTVVFDNLRKFDGREFRQL-LP-GEYTQMAGRAGRRGLDKIGTVVVLC 838
+ A + V+ + +DG+E R + P E QM G G ++ V+++
Sbjct: 1688 SLKAKSNAVIVMGTQYYDGKEHRYIDYPISELLQMLGFTASIGSSELSQVILMT 1741
>sp|Q54XN7|Y8827_DICDI Uncharacterized helicase DDB_G0278827 OS=Dictyostelium discoideum
GN=DDB_G0278827 PE=3 SV=1
Length = 1816
Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 22/180 (12%)
Query: 399 FELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTR--AVYTAPIKTIS 456
F+ D +Q E + ++ +S + A TS+GKT ++ Y F K V+ P K +
Sbjct: 816 FKPDAWQVELLDIVDKRESALICASTSSGKTFISFYCFEQILKESNDGIVVFVCPTKALV 875
Query: 457 NQKYRDFSGKFD---------------VGLLTGDVSLRPEASCLIMTTEILRSMLY---R 498
NQ Y + G++D VG+ T D L E +++T +L+
Sbjct: 876 NQMYAEVLGRYDKNYQAINHRPSNHKMVGVFTRDFRLNIETCQILITVPQCLEILFLSIM 935
Query: 499 GADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGR 558
I+ ++IFDEVH + G +WE +++ P + LSAT+ N +F +++ +
Sbjct: 936 NTHFIQRCRYIIFDEVHQIASSVDGAIWERLLVFNPAP--FLALSATLGNLTDFHNFLKK 993
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 90/208 (43%), Gaps = 53/208 (25%)
Query: 675 TLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSS-------EKSEIRVFCDK-- 725
++ +L K+ LLP + F F+++ C +LA + D+T + EK ++ + ++
Sbjct: 1149 NIVLELQKQDLLPALFFSFNRSLCSRLAQRVYN-DITHRNTNPNIIEEKKQLDLVIERFQ 1207
Query: 726 ------------------AFSRLKGSDRNL----PQIVRVQS--------------LLRR 749
RLK +L PQ + S L +
Sbjct: 1208 KSLGRALADLEPNDPEKMELERLKAKRASLDYLKPQFGNLLSSDIDEKVKKDPLAPALTQ 1267
Query: 750 GIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFR 809
GIA HH G +E LF ++V+F+T T A+GVNAPA++ VF +
Sbjct: 1268 GIAAHHGGCDKNYLRNVEYLFRSKKIQVVFATSTLAVGVNAPAKSSVF-----LGDSPYL 1322
Query: 810 QLLPGEYTQMAGRAGRRGLDKIGTVVVL 837
+L + Q AGRAGRRG D G V+ +
Sbjct: 1323 NVLTSK--QCAGRAGRRGFDNYGNVIFV 1348
>sp|Q8TDG4|HELQ_HUMAN Helicase POLQ-like OS=Homo sapiens GN=HELQ PE=1 SV=2
Length = 1101
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 11/155 (7%)
Query: 689 VIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLK--GSDRNLPQIVRVQSL 746
++FC SK +C+ +A+ + L+ K + + C+ LK G+ P + R
Sbjct: 581 LVFCPSKKNCENVAEMICKF-LSKEYLKHKEKEKCE-VIKNLKNIGNGNLCPVLKRT--- 635
Query: 747 LRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGR 806
+ G+A HH+GL ++++E + GV+ + T T A GVN PAR V+ + +
Sbjct: 636 IPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILR--APYVAK 693
Query: 807 EFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDE 841
EF L +Y QM GRAGR G+D IG +++ +++
Sbjct: 694 EF--LKRNQYKQMIGRAGRAGIDTIGESILILQEK 726
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,585,781
Number of Sequences: 539616
Number of extensions: 22832456
Number of successful extensions: 57188
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 56762
Number of HSP's gapped (non-prelim): 333
length of query: 1379
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1249
effective length of database: 121,419,379
effective search space: 151652804371
effective search space used: 151652804371
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)