Query 039491
Match_columns 1379
No_of_seqs 669 out of 3588
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 10:12:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039491.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039491hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0947 Cytoplasmic exosomal R 100.0 8E-233 2E-237 2054.9 82.7 1228 9-1376 4-1248(1248)
2 KOG0948 Nuclear exosomal RNA h 100.0 1E-198 3E-203 1724.8 67.3 903 392-1376 121-1041(1041)
3 COG4581 Superfamily II RNA hel 100.0 2E-143 4E-148 1344.9 71.4 924 369-1376 93-1041(1041)
4 PRK02362 ski2-like helicase; P 100.0 6.3E-54 1.4E-58 550.9 45.5 433 372-894 2-457 (737)
5 PRK01172 ski2-like helicase; P 100.0 9.8E-51 2.1E-55 517.6 42.0 418 372-894 2-437 (674)
6 COG1204 Superfamily II helicas 100.0 2.5E-51 5.3E-56 517.7 31.0 421 397-897 27-471 (766)
7 PRK00254 ski2-like helicase; P 100.0 6.6E-50 1.4E-54 512.6 44.0 426 372-894 2-447 (720)
8 KOG0952 DNA/RNA helicase MER3/ 100.0 3.5E-48 7.6E-53 472.5 29.4 397 397-890 106-542 (1230)
9 PF08148 DSHCT: DSHCT (NUC185) 100.0 2.8E-48 6.1E-53 415.8 13.1 177 1197-1376 1-180 (180)
10 KOG0330 ATP-dependent RNA heli 100.0 2.2E-45 4.7E-50 410.7 25.8 339 367-851 57-415 (476)
11 PRK11776 ATP-dependent RNA hel 100.0 2.3E-44 5E-49 440.5 37.4 328 371-841 4-349 (460)
12 PRK04837 ATP-dependent RNA hel 100.0 2.7E-44 5.9E-49 435.4 35.9 330 369-841 6-362 (423)
13 PRK10590 ATP-dependent RNA hel 100.0 6.8E-44 1.5E-48 435.5 34.8 326 372-841 2-352 (456)
14 COG1202 Superfamily II helicas 100.0 8.5E-45 1.8E-49 419.5 24.4 324 393-841 208-553 (830)
15 PRK11192 ATP-dependent RNA hel 100.0 5E-43 1.1E-47 425.8 38.2 326 372-840 2-351 (434)
16 COG0513 SrmB Superfamily II DN 100.0 2.2E-43 4.7E-48 434.5 34.6 339 371-852 29-390 (513)
17 PTZ00110 helicase; Provisional 100.0 4.1E-43 8.9E-48 435.7 36.7 332 369-841 128-484 (545)
18 PRK04537 ATP-dependent RNA hel 100.0 5E-43 1.1E-47 436.5 37.5 328 371-841 9-364 (572)
19 KOG0338 ATP-dependent RNA heli 100.0 3.5E-44 7.5E-49 410.3 23.0 343 370-854 180-544 (691)
20 KOG0331 ATP-dependent RNA heli 100.0 3.3E-43 7.3E-48 417.9 31.3 335 370-841 90-448 (519)
21 PLN00206 DEAD-box ATP-dependen 100.0 7.7E-43 1.7E-47 431.7 35.7 329 368-841 118-475 (518)
22 PRK11634 ATP-dependent RNA hel 100.0 1.9E-42 4.1E-47 433.8 37.3 329 370-841 5-352 (629)
23 PTZ00424 helicase 45; Provisio 100.0 1.3E-42 2.9E-47 417.5 34.4 330 370-841 27-374 (401)
24 PRK01297 ATP-dependent RNA hel 100.0 1.3E-41 2.8E-46 417.7 37.8 329 369-841 85-442 (475)
25 TIGR03817 DECH_helic helicase/ 100.0 4.4E-41 9.6E-46 428.9 39.8 342 378-841 21-386 (742)
26 KOG0345 ATP-dependent RNA heli 100.0 6.5E-41 1.4E-45 382.1 31.8 340 370-853 3-373 (567)
27 KOG0328 Predicted ATP-dependen 100.0 8.4E-42 1.8E-46 367.5 22.1 332 367-841 23-373 (400)
28 KOG0951 RNA helicase BRR2, DEA 100.0 2.9E-41 6.3E-46 414.8 28.9 410 369-874 287-732 (1674)
29 PRK13767 ATP-dependent helicas 100.0 4.7E-40 1E-44 427.0 40.3 343 401-861 33-421 (876)
30 TIGR00614 recQ_fam ATP-depende 100.0 9.6E-40 2.1E-44 400.3 34.1 320 394-856 4-346 (470)
31 KOG0333 U5 snRNP-like RNA heli 100.0 5.4E-40 1.2E-44 377.7 28.4 343 368-853 242-637 (673)
32 KOG0342 ATP-dependent RNA heli 100.0 7.4E-40 1.6E-44 376.4 26.4 334 369-841 80-437 (543)
33 KOG0949 Predicted helicase, DE 100.0 1.8E-39 3.8E-44 392.0 30.0 456 397-874 508-1077(1330)
34 KOG0326 ATP-dependent RNA heli 100.0 2.8E-40 6.1E-45 360.5 20.6 354 344-841 59-429 (459)
35 KOG0343 RNA Helicase [RNA proc 100.0 1.7E-39 3.6E-44 374.6 24.9 332 369-841 67-422 (758)
36 PLN03137 ATP-dependent DNA hel 100.0 9.2E-39 2E-43 404.4 33.5 317 395-853 454-797 (1195)
37 KOG0340 ATP-dependent RNA heli 100.0 4.4E-39 9.6E-44 356.6 24.3 340 369-851 5-369 (442)
38 PRK11057 ATP-dependent DNA hel 100.0 2E-37 4.4E-42 389.7 35.0 317 396-856 20-356 (607)
39 PRK09751 putative ATP-dependen 100.0 2E-37 4.2E-42 407.6 35.1 384 420-887 1-437 (1490)
40 KOG0348 ATP-dependent RNA heli 100.0 7.3E-38 1.6E-42 360.4 26.0 394 367-853 132-563 (708)
41 TIGR01389 recQ ATP-dependent D 100.0 4E-37 8.6E-42 387.3 34.0 316 395-854 7-342 (591)
42 KOG0332 ATP-dependent RNA heli 100.0 7.6E-37 1.6E-41 340.4 28.0 342 364-842 83-444 (477)
43 KOG0347 RNA helicase [RNA proc 100.0 3.1E-37 6.8E-42 356.1 21.9 421 367-916 177-642 (731)
44 COG1201 Lhr Lhr-like helicases 100.0 2.2E-36 4.7E-41 377.3 30.4 312 399-836 20-359 (814)
45 KOG0335 ATP-dependent RNA heli 100.0 1.1E-36 2.5E-41 356.6 25.5 327 372-841 75-444 (482)
46 KOG0336 ATP-dependent RNA heli 100.0 5.3E-36 1.2E-40 335.1 23.5 332 377-852 226-581 (629)
47 KOG0950 DNA polymerase theta/e 100.0 5.5E-36 1.2E-40 366.0 23.5 388 401-863 224-631 (1008)
48 TIGR00580 mfd transcription-re 100.0 2.2E-34 4.7E-39 370.9 36.2 303 394-841 445-770 (926)
49 KOG0339 ATP-dependent RNA heli 100.0 1.4E-34 3.1E-39 330.9 28.7 336 364-841 216-575 (731)
50 KOG0346 RNA helicase [RNA proc 100.0 9.6E-35 2.1E-39 328.9 26.9 328 371-841 19-410 (569)
51 PRK10917 ATP-dependent DNA hel 100.0 4E-34 8.6E-39 363.7 35.9 307 396-840 257-588 (681)
52 PRK10689 transcription-repair 100.0 4.7E-34 1E-38 374.8 34.6 303 393-840 593-918 (1147)
53 TIGR00643 recG ATP-dependent D 100.0 5.3E-34 1.1E-38 360.3 32.5 308 396-840 231-565 (630)
54 KOG0350 DEAD-box ATP-dependent 100.0 5.6E-34 1.2E-38 327.1 22.8 320 401-853 160-550 (620)
55 KOG0341 DEAD-box protein abstr 100.0 3.8E-35 8.3E-40 326.2 11.4 332 369-842 168-529 (610)
56 KOG0327 Translation initiation 100.0 7.1E-34 1.5E-38 320.5 21.6 338 370-853 25-380 (397)
57 TIGR01970 DEAH_box_HrpB ATP-de 100.0 6.1E-33 1.3E-37 354.3 32.8 388 403-935 5-412 (819)
58 PRK11664 ATP-dependent RNA hel 100.0 1.1E-32 2.3E-37 352.9 32.5 388 403-935 8-415 (812)
59 KOG0344 ATP-dependent RNA heli 100.0 4.3E-33 9.3E-38 327.7 24.0 312 397-841 154-495 (593)
60 KOG0334 RNA helicase [RNA proc 100.0 1.1E-32 2.4E-37 341.6 24.9 331 367-840 361-719 (997)
61 KOG4284 DEAD box protein [Tran 100.0 3.8E-33 8.3E-38 325.7 19.1 346 370-851 24-388 (980)
62 COG0514 RecQ Superfamily II DN 100.0 4.5E-32 9.7E-37 328.6 25.2 319 394-854 10-348 (590)
63 PHA02558 uvsW UvsW helicase; P 100.0 9E-31 2E-35 323.2 33.2 315 398-829 112-442 (501)
64 TIGR02621 cas3_GSU0051 CRISPR- 100.0 8.1E-31 1.8E-35 329.3 30.8 302 397-837 12-388 (844)
65 TIGR01587 cas3_core CRISPR-ass 100.0 5.9E-31 1.3E-35 312.1 27.8 294 417-841 1-336 (358)
66 COG1111 MPH1 ERCC4-like helica 100.0 4.6E-30 1E-34 298.3 28.7 404 399-849 14-489 (542)
67 KOG0337 ATP-dependent RNA heli 100.0 2.4E-31 5.1E-36 300.5 16.9 329 369-841 19-368 (529)
68 PF13234 rRNA_proc-arch: rRNA- 100.0 3.4E-31 7.3E-36 302.1 17.7 253 882-1175 1-267 (268)
69 PHA02653 RNA helicase NPH-II; 100.0 2.6E-29 5.6E-34 314.6 29.5 311 403-841 167-514 (675)
70 TIGR03158 cas3_cyano CRISPR-as 100.0 4.2E-29 9.1E-34 295.9 28.8 284 404-824 1-357 (357)
71 PRK13766 Hef nuclease; Provisi 100.0 2.4E-28 5.1E-33 317.4 35.2 397 397-842 12-480 (773)
72 COG1205 Distinct helicase fami 100.0 6.3E-29 1.4E-33 318.7 29.1 325 398-840 68-421 (851)
73 PRK11131 ATP-dependent RNA hel 100.0 2.6E-28 5.7E-33 316.8 32.9 341 402-877 76-440 (1294)
74 TIGR00603 rad25 DNA repair hel 100.0 9.6E-28 2.1E-32 299.2 32.8 327 397-842 252-608 (732)
75 KOG0354 DEAD-box like helicase 100.0 6.4E-28 1.4E-32 295.0 28.4 396 398-840 60-528 (746)
76 PRK09401 reverse gyrase; Revie 100.0 5.9E-28 1.3E-32 318.2 29.8 312 371-825 54-430 (1176)
77 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.9E-27 4E-32 310.1 31.0 342 402-877 69-433 (1283)
78 PRK14701 reverse gyrase; Provi 100.0 1.7E-27 3.8E-32 319.4 28.5 314 372-829 54-446 (1638)
79 TIGR01054 rgy reverse gyrase. 100.0 3.7E-27 8E-32 311.1 30.6 287 372-798 53-404 (1171)
80 KOG0352 ATP-dependent DNA heli 100.0 6E-28 1.3E-32 272.2 19.1 338 395-859 13-378 (641)
81 COG1200 RecG RecG-like helicas 100.0 1.2E-26 2.6E-31 280.3 27.9 307 396-842 258-592 (677)
82 KOG0351 ATP-dependent DNA heli 99.9 2.4E-27 5.2E-32 302.0 21.6 318 396-855 259-604 (941)
83 COG1061 SSL2 DNA or RNA helica 99.9 5.7E-25 1.2E-29 267.2 31.0 327 395-826 31-376 (442)
84 PRK09200 preprotein translocas 99.9 5.8E-25 1.3E-29 276.8 29.8 350 394-841 72-541 (790)
85 PRK12898 secA preprotein trans 99.9 5E-25 1.1E-29 272.2 27.9 123 394-518 97-255 (656)
86 PRK05580 primosome assembly pr 99.9 2.4E-24 5.1E-29 273.7 32.3 354 397-841 141-549 (679)
87 TIGR03714 secA2 accessory Sec 99.9 4.6E-24 9.9E-29 266.4 30.1 344 401-841 69-537 (762)
88 KOG0329 ATP-dependent RNA heli 99.9 6.2E-26 1.4E-30 242.0 11.0 297 370-841 41-355 (387)
89 COG1197 Mfd Transcription-repa 99.9 4.8E-24 1E-28 269.9 29.3 301 393-840 587-912 (1139)
90 COG4098 comFA Superfamily II D 99.9 1.2E-23 2.7E-28 233.5 28.7 308 397-841 94-416 (441)
91 COG1643 HrpA HrpA-like helicas 99.9 5.1E-24 1.1E-28 268.9 27.9 387 402-935 52-464 (845)
92 TIGR00963 secA preprotein tran 99.9 5.9E-24 1.3E-28 263.8 26.4 350 394-841 50-517 (745)
93 PRK09694 helicase Cas3; Provis 99.9 2.6E-23 5.6E-28 266.3 32.0 324 398-828 284-664 (878)
94 KOG0353 ATP-dependent DNA heli 99.9 6.7E-24 1.5E-28 235.8 21.2 301 401-839 95-465 (695)
95 KOG0951 RNA helicase BRR2, DEA 99.9 2.6E-24 5.6E-29 266.5 19.4 353 401-865 1144-1515(1674)
96 KOG0922 DEAH-box RNA helicase 99.9 1.7E-23 3.6E-28 250.7 23.5 381 402-927 53-458 (674)
97 PRK04914 ATP-dependent helicas 99.9 2.9E-23 6.3E-28 267.3 27.2 397 399-854 151-617 (956)
98 TIGR00595 priA primosomal prot 99.9 6E-23 1.3E-27 252.6 27.9 329 419-840 1-380 (505)
99 KOG0349 Putative DEAD-box RNA 99.9 8.2E-24 1.8E-28 238.7 14.0 300 445-841 288-615 (725)
100 PRK11448 hsdR type I restricti 99.9 2.1E-21 4.6E-26 255.2 33.4 344 398-828 411-802 (1123)
101 cd00268 DEADc DEAD-box helicas 99.9 5.2E-22 1.1E-26 216.6 20.2 184 373-566 1-202 (203)
102 KOG0923 mRNA splicing factor A 99.9 2.7E-21 5.8E-26 228.4 23.5 385 402-934 267-682 (902)
103 KOG0924 mRNA splicing factor A 99.8 5.9E-20 1.3E-24 217.0 23.5 387 403-935 359-774 (1042)
104 PF00270 DEAD: DEAD/DEAH box h 99.8 1.2E-20 2.6E-25 199.1 14.4 146 402-547 1-163 (169)
105 KOG0953 Mitochondrial RNA heli 99.8 7.2E-20 1.6E-24 213.8 20.6 306 415-873 191-507 (700)
106 KOG0920 ATP-dependent RNA heli 99.8 2.9E-19 6.3E-24 225.0 25.3 347 402-840 175-543 (924)
107 PRK13104 secA preprotein trans 99.8 1.5E-18 3.3E-23 218.5 26.8 122 395-518 77-215 (896)
108 PRK12906 secA preprotein trans 99.8 6.6E-19 1.4E-23 221.0 23.3 351 393-841 73-553 (796)
109 KOG0926 DEAH-box RNA helicase 99.8 5.2E-19 1.1E-23 212.1 19.8 346 405-841 261-704 (1172)
110 PRK12904 preprotein translocas 99.8 1.8E-18 3.9E-23 217.9 25.3 123 394-518 75-214 (830)
111 COG1203 CRISPR-associated heli 99.8 1.1E-17 2.4E-22 214.8 24.5 312 401-841 196-550 (733)
112 PLN03142 Probable chromatin-re 99.8 4.3E-17 9.3E-22 211.3 28.1 376 400-848 169-606 (1033)
113 COG1198 PriA Primosomal protei 99.7 1.4E-16 3E-21 199.5 23.8 141 400-547 198-360 (730)
114 TIGR01407 dinG_rel DnaQ family 99.7 1.6E-15 3.5E-20 198.6 33.3 65 397-461 242-310 (850)
115 PRK12899 secA preprotein trans 99.7 7.4E-16 1.6E-20 194.0 28.5 125 394-518 86-228 (970)
116 TIGR00631 uvrb excinuclease AB 99.7 9.5E-16 2.1E-20 193.5 28.9 112 684-841 441-553 (655)
117 PRK13107 preprotein translocas 99.7 7.9E-16 1.7E-20 193.7 25.9 122 395-518 77-215 (908)
118 TIGR00348 hsdR type I site-spe 99.7 3E-15 6.5E-20 190.8 28.2 142 401-547 239-403 (667)
119 COG4096 HsdR Type I site-speci 99.7 2E-15 4.4E-20 185.4 23.9 146 400-551 165-325 (875)
120 KOG0925 mRNA splicing factor A 99.7 1.5E-15 3.2E-20 175.2 20.9 384 403-935 50-464 (699)
121 smart00487 DEXDc DEAD-like hel 99.7 1.1E-15 2.4E-20 163.0 18.5 158 397-554 5-178 (201)
122 COG1110 Reverse gyrase [DNA re 99.7 5.4E-15 1.2E-19 183.6 26.6 124 393-520 75-218 (1187)
123 PRK05298 excinuclease ABC subu 99.6 2.5E-14 5.5E-19 181.8 28.7 111 684-840 445-556 (652)
124 COG0556 UvrB Helicase subunit 99.6 4.3E-14 9.2E-19 165.9 22.5 109 685-840 446-556 (663)
125 KOG4150 Predicted ATP-dependen 99.6 7.7E-14 1.7E-18 162.7 21.4 339 385-838 270-639 (1034)
126 PF04851 ResIII: Type III rest 99.6 1.6E-14 3.4E-19 154.0 13.1 141 399-547 2-183 (184)
127 PRK12900 secA preprotein trans 99.5 3.1E-13 6.6E-18 171.1 23.4 122 669-841 580-711 (1025)
128 KOG0952 DNA/RNA helicase MER3/ 99.5 5E-16 1.1E-20 192.5 -2.0 177 401-581 928-1125(1230)
129 PRK07246 bifunctional ATP-depe 99.5 2.7E-12 5.8E-17 166.7 31.4 63 397-460 242-308 (820)
130 PRK08074 bifunctional ATP-depe 99.5 4.7E-12 1E-16 167.1 31.8 64 398-461 255-323 (928)
131 KOG1123 RNA polymerase II tran 99.5 6.5E-14 1.4E-18 162.0 11.7 300 401-827 303-635 (776)
132 cd00046 DEXDc DEAD-like helica 99.5 5.2E-13 1.1E-17 134.1 13.9 131 416-546 1-144 (144)
133 COG4889 Predicted helicase [Ge 99.4 6.5E-13 1.4E-17 161.1 15.2 356 397-839 158-586 (1518)
134 KOG0385 Chromatin remodeling c 99.4 2.1E-11 4.5E-16 148.0 26.7 377 398-850 165-608 (971)
135 cd00079 HELICc Helicase superf 99.4 9.9E-13 2.1E-17 132.3 12.3 116 673-837 14-131 (131)
136 PRK12326 preprotein translocas 99.4 3E-11 6.5E-16 149.8 27.3 123 394-518 72-211 (764)
137 PF00271 Helicase_C: Helicase 99.4 4.4E-13 9.4E-18 124.1 8.6 73 747-827 6-78 (78)
138 PRK13103 secA preprotein trans 99.4 1E-10 2.2E-15 148.4 27.1 121 396-518 78-215 (913)
139 KOG1000 Chromatin remodeling p 99.3 7.5E-11 1.6E-15 137.3 19.6 367 401-859 199-620 (689)
140 KOG0387 Transcription-coupled 99.3 6E-10 1.3E-14 136.3 26.3 376 401-848 206-665 (923)
141 KOG0384 Chromodomain-helicase 99.3 3.2E-10 7E-15 143.8 22.7 384 398-849 368-819 (1373)
142 PRK11747 dinG ATP-dependent DN 99.2 4.4E-09 9.4E-14 135.3 31.8 63 398-460 23-95 (697)
143 KOG0390 DNA repair protein, SN 99.2 1.6E-09 3.5E-14 135.9 26.4 383 400-853 238-719 (776)
144 TIGR02562 cas3_yersinia CRISPR 99.2 7.2E-10 1.6E-14 141.6 22.6 147 402-550 410-638 (1110)
145 COG1199 DinG Rad3-related DNA 99.2 2.9E-09 6.2E-14 137.0 28.2 70 397-466 12-86 (654)
146 PRK14873 primosome assembly pr 99.2 4.3E-10 9.3E-15 142.4 19.7 117 424-547 169-304 (665)
147 smart00490 HELICc helicase sup 99.2 9.8E-11 2.1E-15 107.9 8.5 72 748-827 11-82 (82)
148 PF07652 Flavi_DEAD: Flaviviru 99.1 1.6E-10 3.5E-15 118.0 10.4 133 414-550 3-140 (148)
149 PRK12903 secA preprotein trans 99.1 7.7E-09 1.7E-13 130.3 24.5 122 395-518 73-211 (925)
150 CHL00122 secA preprotein trans 99.1 1.6E-08 3.6E-13 128.1 25.5 123 394-518 70-209 (870)
151 TIGR00604 rad3 DNA repair heli 99.0 2.7E-08 5.7E-13 128.9 25.9 70 396-465 5-82 (705)
152 PF00176 SNF2_N: SNF2 family N 98.9 8.5E-09 1.8E-13 119.0 15.2 145 404-557 1-185 (299)
153 KOG0392 SNF2 family DNA-depend 98.9 6.8E-08 1.5E-12 122.7 22.7 377 401-842 976-1455(1549)
154 KOG0921 Dosage compensation co 98.9 4.6E-09 1E-13 129.2 8.7 360 403-839 381-772 (1282)
155 KOG0389 SNF2 family DNA-depend 98.8 2.8E-07 6.1E-12 113.4 23.1 154 398-560 397-578 (941)
156 PRK12902 secA preprotein trans 98.7 7E-07 1.5E-11 113.5 21.6 122 395-518 80-218 (939)
157 PF02399 Herpes_ori_bp: Origin 98.7 2.9E-06 6.3E-11 107.0 26.4 150 416-570 50-213 (824)
158 TIGR03117 cas_csf4 CRISPR-asso 98.7 1.3E-07 2.8E-12 119.0 14.0 56 409-464 10-67 (636)
159 KOG1002 Nucleotide excision re 98.6 8.4E-06 1.8E-10 95.8 24.7 153 400-557 184-367 (791)
160 PRK12901 secA preprotein trans 98.4 1.1E-05 2.4E-10 103.8 20.5 121 396-518 165-303 (1112)
161 KOG4439 RNA polymerase II tran 98.2 0.00012 2.6E-09 89.9 21.3 148 398-549 323-505 (901)
162 COG0553 HepA Superfamily II DN 98.1 6.8E-05 1.5E-09 99.6 20.7 109 687-842 713-823 (866)
163 PF07517 SecA_DEAD: SecA DEAD- 98.1 1.1E-05 2.3E-10 92.1 11.2 122 395-518 72-210 (266)
164 smart00488 DEXDc2 DEAD-like he 98.1 5.8E-06 1.3E-10 96.1 9.1 71 396-466 4-84 (289)
165 smart00489 DEXDc3 DEAD-like he 98.1 5.8E-06 1.3E-10 96.1 9.1 71 396-466 4-84 (289)
166 COG0610 Type I site-specific r 98.1 0.00026 5.7E-09 94.3 23.7 127 416-546 274-413 (962)
167 PRK15483 type III restriction- 98.0 3.4E-05 7.5E-10 100.2 13.6 129 416-548 60-240 (986)
168 PF13604 AAA_30: AAA domain; P 98.0 2.8E-05 6.1E-10 85.3 10.7 122 400-544 1-129 (196)
169 KOG0386 Chromatin remodeling c 98.0 3.2E-05 7E-10 97.9 12.0 80 754-841 756-838 (1157)
170 PF13872 AAA_34: P-loop contai 97.8 0.00019 4.1E-09 82.5 12.8 144 401-546 38-220 (303)
171 PF02562 PhoH: PhoH-like prote 97.7 2.7E-05 5.9E-10 85.6 5.0 122 401-543 5-153 (205)
172 PF09848 DUF2075: Uncharacteri 97.7 0.00011 2.5E-09 87.8 9.6 93 417-519 3-97 (352)
173 TIGR01448 recD_rel helicase, p 97.7 0.00037 8E-09 90.6 14.5 127 396-545 319-452 (720)
174 TIGR00596 rad1 DNA repair prot 97.5 0.0058 1.3E-07 79.9 22.0 69 480-548 6-74 (814)
175 KOG1015 Transcription regulato 97.5 0.0016 3.4E-08 82.2 15.5 144 685-855 1142-1291(1567)
176 KOG1803 DNA helicase [Replicat 97.5 0.0002 4.3E-09 87.5 7.7 68 397-464 182-250 (649)
177 PRK10536 hypothetical protein; 97.5 0.00027 5.8E-09 80.0 8.2 136 397-543 55-210 (262)
178 PRK10875 recD exonuclease V su 97.5 0.00074 1.6E-08 85.9 12.8 136 401-543 153-299 (615)
179 TIGR01447 recD exodeoxyribonuc 97.5 0.00088 1.9E-08 85.0 13.4 134 403-543 148-293 (586)
180 COG0653 SecA Preprotein transl 97.4 0.0017 3.6E-08 83.3 14.8 120 397-518 77-213 (822)
181 TIGR02768 TraA_Ti Ti-type conj 97.3 0.0025 5.3E-08 83.4 14.6 124 397-543 349-474 (744)
182 PF13086 AAA_11: AAA domain; P 97.2 0.00071 1.5E-08 74.8 7.9 65 401-465 2-75 (236)
183 KOG1132 Helicase of the DEAD s 97.2 0.0012 2.6E-08 83.7 10.2 73 395-467 16-134 (945)
184 PF13245 AAA_19: Part of AAA d 97.2 0.001 2.2E-08 61.9 7.2 56 408-463 2-62 (76)
185 PRK13889 conjugal transfer rel 97.2 0.0033 7.2E-08 83.5 14.2 125 397-545 343-470 (988)
186 PF12340 DUF3638: Protein of u 97.1 0.0027 5.9E-08 70.8 11.2 140 371-519 3-186 (229)
187 PF06862 DUF1253: Protein of u 97.1 0.08 1.7E-06 64.7 24.5 118 676-840 290-414 (442)
188 cd00009 AAA The AAA+ (ATPases 97.1 0.0047 1E-07 62.3 11.6 39 415-453 19-57 (151)
189 COG3421 Uncharacterized protei 97.1 0.0083 1.8E-07 73.3 14.8 129 421-549 3-168 (812)
190 PF13307 Helicase_C_2: Helicas 96.9 0.0024 5.1E-08 68.4 7.8 119 682-842 6-151 (167)
191 smart00382 AAA ATPases associa 96.8 0.0034 7.4E-08 62.6 8.0 95 415-523 2-96 (148)
192 PRK13826 Dtr system oriT relax 96.8 0.011 2.3E-07 79.3 14.6 126 397-545 378-505 (1102)
193 PF13401 AAA_22: AAA domain; P 96.8 0.0011 2.3E-08 67.2 4.2 114 414-543 3-123 (131)
194 PRK06526 transposase; Provisio 96.7 0.0073 1.6E-07 69.1 10.3 106 412-546 95-201 (254)
195 PRK08181 transposase; Validate 96.7 0.019 4.2E-07 66.2 13.7 90 401-519 88-181 (269)
196 PRK04296 thymidine kinase; Pro 96.6 0.0044 9.6E-08 67.8 7.3 87 415-518 2-91 (190)
197 PF00580 UvrD-helicase: UvrD/R 96.4 0.0059 1.3E-07 70.9 7.5 94 401-496 1-104 (315)
198 PHA02533 17 large terminase pr 96.4 0.0087 1.9E-07 75.3 8.9 141 396-545 55-209 (534)
199 TIGR00376 DNA helicase, putati 96.3 0.01 2.3E-07 76.3 9.5 67 400-466 157-224 (637)
200 COG1875 NYN ribonuclease and A 96.3 0.016 3.4E-07 67.9 9.7 135 395-543 222-385 (436)
201 KOG2340 Uncharacterized conser 96.3 0.076 1.6E-06 64.5 15.3 126 401-530 217-436 (698)
202 PF05970 PIF1: PIF1-like helic 96.1 0.0092 2E-07 71.9 6.9 108 400-519 1-116 (364)
203 KOG0391 SNF2 family DNA-depend 96.1 0.018 4E-07 74.4 9.6 140 400-545 615-774 (1958)
204 PRK14974 cell division protein 96.0 0.095 2.1E-06 62.4 14.2 123 416-548 141-266 (336)
205 KOG1016 Predicted DNA helicase 95.6 2.6 5.5E-05 53.7 24.4 114 754-876 767-890 (1387)
206 PRK07952 DNA replication prote 95.5 0.17 3.7E-06 57.6 13.6 77 416-520 100-177 (244)
207 PRK08116 hypothetical protein; 95.5 0.2 4.3E-06 58.0 14.0 44 416-461 115-159 (268)
208 PRK12723 flagellar biosynthesi 95.4 0.12 2.5E-06 62.7 12.2 124 415-557 174-307 (388)
209 PRK08727 hypothetical protein; 95.2 0.088 1.9E-06 59.5 10.0 35 416-450 42-76 (233)
210 TIGR02760 TraI_TIGR conjugativ 95.2 0.16 3.5E-06 73.0 14.7 134 397-542 426-563 (1960)
211 PRK08903 DnaA regulatory inact 95.2 0.15 3.2E-06 57.2 11.6 38 414-451 41-78 (227)
212 COG3587 Restriction endonuclea 95.2 0.064 1.4E-06 68.4 9.2 131 416-550 75-246 (985)
213 cd01120 RecA-like_NTPases RecA 95.1 0.048 1E-06 56.5 7.1 41 418-458 2-42 (165)
214 PRK08084 DNA replication initi 95.1 0.12 2.7E-06 58.4 10.7 38 415-452 45-82 (235)
215 PRK05703 flhF flagellar biosyn 95.1 0.26 5.6E-06 60.7 14.3 127 413-556 219-351 (424)
216 PRK09183 transposase/IS protei 95.1 0.3 6.5E-06 56.2 14.0 46 412-458 99-144 (259)
217 PRK05642 DNA replication initi 95.1 0.093 2E-06 59.4 9.6 94 416-548 46-141 (234)
218 KOG1802 RNA helicase nonsense 95.0 0.053 1.2E-06 67.2 7.5 81 387-467 396-478 (935)
219 PHA03333 putative ATPase subun 94.9 0.24 5.3E-06 62.9 13.3 149 398-558 167-343 (752)
220 PRK06893 DNA replication initi 94.9 0.069 1.5E-06 60.2 7.9 37 415-451 39-75 (229)
221 PRK12402 replication factor C 94.8 0.17 3.7E-06 59.9 11.2 23 417-439 38-60 (337)
222 PRK12377 putative replication 94.8 0.35 7.7E-06 55.3 13.2 75 415-518 101-176 (248)
223 KOG0388 SNF2 family DNA-depend 94.7 0.1 2.2E-06 64.9 9.0 142 400-550 567-738 (1185)
224 TIGR03420 DnaA_homol_Hda DnaA 94.6 0.21 4.6E-06 55.6 10.9 36 414-449 37-72 (226)
225 PRK14712 conjugal transfer nic 94.6 0.21 4.5E-06 69.5 12.5 125 397-545 832-967 (1623)
226 PRK06921 hypothetical protein; 94.6 0.28 6E-06 56.7 11.8 43 414-458 116-160 (266)
227 COG1484 DnaC DNA replication p 94.5 0.2 4.4E-06 57.4 10.6 91 413-532 103-195 (254)
228 PHA00729 NTP-binding motif con 94.5 0.26 5.6E-06 55.4 11.0 115 417-558 19-138 (226)
229 PRK11889 flhF flagellar biosyn 94.5 0.56 1.2E-05 56.7 14.3 126 415-557 241-372 (436)
230 PRK04195 replication factor C 94.5 0.16 3.4E-06 63.7 10.4 49 369-433 9-57 (482)
231 PRK14722 flhF flagellar biosyn 94.4 0.15 3.2E-06 61.5 9.5 118 412-548 134-259 (374)
232 smart00492 HELICc3 helicase su 94.4 0.12 2.6E-06 54.0 7.6 85 751-837 24-135 (141)
233 TIGR03015 pepcterm_ATPase puta 94.4 0.21 4.5E-06 57.2 10.4 35 401-435 24-63 (269)
234 KOG0388 SNF2 family DNA-depend 94.4 0.15 3.3E-06 63.5 9.4 123 672-842 1032-1155(1185)
235 PRK13709 conjugal transfer nic 94.4 0.3 6.4E-06 68.9 13.4 125 397-545 964-1099(1747)
236 PHA03368 DNA packaging termina 94.3 0.29 6.2E-06 62.1 11.9 148 399-559 239-402 (738)
237 PRK00149 dnaA chromosomal repl 94.3 0.24 5.1E-06 61.6 11.4 75 416-520 149-226 (450)
238 PRK00411 cdc6 cell division co 94.3 0.22 4.7E-06 60.5 10.9 35 415-449 55-91 (394)
239 PF00308 Bac_DnaA: Bacterial d 94.3 0.4 8.6E-06 53.8 12.0 100 417-549 36-143 (219)
240 KOG0989 Replication factor C, 94.2 0.12 2.6E-06 59.6 7.6 44 502-546 126-169 (346)
241 cd01124 KaiC KaiC is a circadi 94.2 0.1 2.2E-06 56.1 7.0 47 417-464 1-47 (187)
242 PF00448 SRP54: SRP54-type pro 94.2 0.24 5.2E-06 54.6 9.9 123 417-549 3-128 (196)
243 PRK11054 helD DNA helicase IV; 94.2 0.18 4E-06 65.5 10.3 83 398-494 194-280 (684)
244 PRK10919 ATP-dependent DNA hel 94.1 0.14 3E-06 66.7 9.2 86 400-496 2-91 (672)
245 cd00984 DnaB_C DnaB helicase C 94.1 0.21 4.6E-06 56.3 9.6 46 413-458 11-60 (242)
246 PTZ00112 origin recognition co 94.1 0.25 5.5E-06 64.2 10.9 93 418-520 784-884 (1164)
247 TIGR00362 DnaA chromosomal rep 94.0 0.3 6.4E-06 59.9 11.3 75 416-520 137-214 (405)
248 TIGR02760 TraI_TIGR conjugativ 94.0 0.31 6.8E-06 70.2 12.9 123 398-544 1017-1148(1960)
249 KOG1131 RNA polymerase II tran 93.9 0.25 5.5E-06 59.9 9.8 58 396-453 11-77 (755)
250 KOG0391 SNF2 family DNA-depend 93.9 0.26 5.7E-06 64.5 10.4 131 672-850 1264-1396(1958)
251 PRK12422 chromosomal replicati 93.8 0.3 6.5E-06 60.5 10.8 75 416-520 142-217 (445)
252 PF06745 KaiC: KaiC; InterPro 93.7 0.23 5.1E-06 55.5 8.7 127 414-545 18-159 (226)
253 PRK12727 flagellar biosynthesi 93.6 0.66 1.4E-05 58.1 13.1 128 412-557 347-479 (559)
254 COG1419 FlhF Flagellar GTP-bin 93.6 0.76 1.6E-05 55.5 13.1 141 414-583 202-347 (407)
255 PRK14956 DNA polymerase III su 93.4 0.37 8E-06 59.8 10.4 26 504-533 120-145 (484)
256 COG1444 Predicted P-loop ATPas 93.4 0.25 5.4E-06 63.7 9.2 131 401-549 212-359 (758)
257 PRK07003 DNA polymerase III su 93.3 0.76 1.7E-05 59.5 13.1 36 504-543 118-156 (830)
258 PRK06835 DNA replication prote 93.2 0.64 1.4E-05 55.4 11.7 45 414-459 182-226 (329)
259 KOG0733 Nuclear AAA ATPase (VC 93.1 0.11 2.4E-06 64.3 5.3 56 369-432 506-562 (802)
260 TIGR00064 ftsY signal recognit 93.1 0.78 1.7E-05 53.2 11.9 123 415-547 72-203 (272)
261 COG1702 PhoH Phosphate starvat 93.1 0.11 2.5E-06 60.8 5.0 105 401-516 129-254 (348)
262 smart00491 HELICc2 helicase su 92.9 0.22 4.9E-06 52.0 6.5 76 760-837 30-136 (142)
263 TIGR01075 uvrD DNA helicase II 92.8 0.31 6.7E-06 64.1 9.3 84 401-496 5-92 (715)
264 COG1474 CDC6 Cdc6-related prot 92.8 0.34 7.4E-06 58.5 8.9 95 416-522 43-140 (366)
265 PRK14958 DNA polymerase III su 92.8 0.65 1.4E-05 58.6 11.6 36 504-543 118-156 (509)
266 PRK07994 DNA polymerase III su 92.8 0.77 1.7E-05 59.1 12.4 36 503-542 117-155 (647)
267 PRK10416 signal recognition pa 92.8 1.1 2.4E-05 53.1 12.9 125 414-548 113-246 (318)
268 PRK09112 DNA polymerase III su 92.7 0.56 1.2E-05 56.4 10.5 118 417-543 47-178 (351)
269 KOG1805 DNA replication helica 92.7 0.51 1.1E-05 61.4 10.4 66 401-466 670-736 (1100)
270 PRK12724 flagellar biosynthesi 92.6 1.8 3.8E-05 53.1 14.4 117 415-548 223-346 (432)
271 PRK08939 primosomal protein Dn 92.6 1.2 2.6E-05 52.6 12.8 102 414-544 155-259 (306)
272 PRK12323 DNA polymerase III su 92.6 0.69 1.5E-05 59.1 11.4 37 503-543 122-161 (700)
273 PRK11773 uvrD DNA-dependent he 92.5 0.34 7.3E-06 63.8 9.0 85 400-496 9-97 (721)
274 PF03354 Terminase_1: Phage Te 92.5 0.3 6.5E-06 61.2 8.2 65 403-467 1-78 (477)
275 COG4626 Phage terminase-like p 92.5 0.49 1.1E-05 58.8 9.6 147 395-545 56-224 (546)
276 PRK06731 flhF flagellar biosyn 92.5 2.4 5.2E-05 49.2 14.7 126 414-557 74-206 (270)
277 PRK07764 DNA polymerase III su 92.4 0.58 1.3E-05 62.0 10.9 40 503-543 118-157 (824)
278 PRK12726 flagellar biosynthesi 92.4 1.7 3.7E-05 52.5 13.7 128 414-557 205-337 (407)
279 PRK08691 DNA polymerase III su 92.3 0.91 2E-05 58.6 12.1 37 503-543 117-156 (709)
280 PF13173 AAA_14: AAA domain 92.3 0.73 1.6E-05 46.9 9.3 35 414-449 1-35 (128)
281 PRK08533 flagellar accessory p 92.3 0.31 6.7E-06 55.1 7.2 41 412-452 21-61 (230)
282 PLN03025 replication factor C 92.2 0.74 1.6E-05 54.6 10.5 19 416-434 35-53 (319)
283 PRK14088 dnaA chromosomal repl 92.2 1.3 2.8E-05 55.0 13.0 76 416-520 131-209 (440)
284 KOG0298 DEAD box-containing he 92.0 0.55 1.2E-05 62.6 9.7 128 414-545 373-549 (1394)
285 TIGR01074 rep ATP-dependent DN 92.0 0.52 1.1E-05 61.5 9.8 85 401-496 2-90 (664)
286 COG1222 RPT1 ATP-dependent 26S 92.0 0.34 7.4E-06 57.1 7.1 77 346-432 125-202 (406)
287 TIGR02881 spore_V_K stage V sp 91.9 0.81 1.7E-05 52.6 10.2 20 416-435 43-62 (261)
288 PRK14949 DNA polymerase III su 91.9 0.8 1.7E-05 60.4 11.0 35 504-542 118-155 (944)
289 PF13177 DNA_pol3_delta2: DNA 91.9 0.86 1.9E-05 48.7 9.6 114 416-546 20-142 (162)
290 PRK14087 dnaA chromosomal repl 91.9 0.46 9.9E-06 59.0 8.6 76 416-519 142-220 (450)
291 KOG0736 Peroxisome assembly fa 91.8 0.69 1.5E-05 59.1 9.8 169 365-590 663-838 (953)
292 PRK14969 DNA polymerase III su 91.7 1.3 2.9E-05 56.1 12.6 38 502-543 116-156 (527)
293 PRK06620 hypothetical protein; 91.7 0.74 1.6E-05 51.5 9.2 18 416-433 45-62 (214)
294 PRK14952 DNA polymerase III su 91.6 1.4 3.1E-05 56.3 12.7 37 503-543 116-155 (584)
295 TIGR02928 orc1/cdc6 family rep 91.6 0.78 1.7E-05 55.1 10.0 23 416-438 41-63 (365)
296 TIGR03600 phage_DnaB phage rep 91.5 0.77 1.7E-05 56.6 10.0 40 411-450 190-230 (421)
297 TIGR02880 cbbX_cfxQ probable R 91.5 0.96 2.1E-05 52.8 10.2 19 415-433 58-76 (284)
298 PRK06645 DNA polymerase III su 91.4 1.6 3.4E-05 55.0 12.6 37 502-542 125-164 (507)
299 TIGR03689 pup_AAA proteasome A 91.4 0.24 5.2E-06 62.1 5.4 57 369-433 177-234 (512)
300 CHL00181 cbbX CbbX; Provisiona 91.2 1.2 2.5E-05 52.2 10.5 24 415-438 59-82 (287)
301 COG2804 PulE Type II secretory 91.0 0.39 8.5E-06 59.2 6.6 48 401-449 242-291 (500)
302 TIGR02012 tigrfam_recA protein 91.0 0.29 6.3E-06 57.9 5.3 47 413-459 53-99 (321)
303 PRK14961 DNA polymerase III su 91.0 1.6 3.5E-05 52.8 11.8 37 503-543 117-156 (363)
304 TIGR01073 pcrA ATP-dependent D 90.9 0.69 1.5E-05 61.0 9.3 85 400-496 4-92 (726)
305 PRK08451 DNA polymerase III su 90.9 2.2 4.8E-05 53.9 13.1 109 417-543 38-154 (535)
306 PRK00771 signal recognition pa 90.8 1.7 3.8E-05 53.6 12.0 119 415-547 95-218 (437)
307 TIGR03499 FlhF flagellar biosy 90.8 0.85 1.8E-05 53.2 8.9 86 413-514 192-281 (282)
308 PRK14960 DNA polymerase III su 90.7 1.3 2.9E-05 56.7 11.0 36 504-543 117-155 (702)
309 PRK11823 DNA repair protein Ra 90.7 1.2 2.5E-05 55.5 10.4 90 413-519 78-170 (446)
310 cd03115 SRP The signal recogni 90.7 2.7 5.9E-05 44.9 12.0 117 418-546 3-124 (173)
311 TIGR00635 ruvB Holliday juncti 90.5 1 2.3E-05 52.7 9.5 17 416-432 31-47 (305)
312 PRK14963 DNA polymerase III su 90.5 1.3 2.7E-05 55.9 10.6 125 369-533 9-140 (504)
313 PRK13833 conjugal transfer pro 90.5 0.46 1E-05 56.3 6.4 55 401-456 129-187 (323)
314 PRK14086 dnaA chromosomal repl 90.5 1.4 3E-05 56.4 10.8 74 417-520 316-392 (617)
315 PRK05986 cob(I)alamin adenolsy 90.5 0.66 1.4E-05 50.8 7.1 140 414-557 21-170 (191)
316 PRK14951 DNA polymerase III su 90.4 1.9 4.2E-05 55.4 12.3 37 503-543 122-161 (618)
317 PF13871 Helicase_C_4: Helicas 90.3 0.3 6.5E-06 56.4 4.5 82 767-853 54-139 (278)
318 PF01695 IstB_IS21: IstB-like 90.2 0.37 8.1E-06 52.3 4.9 46 412-458 44-89 (178)
319 COG2256 MGS1 ATPase related to 90.2 1.1 2.3E-05 53.8 8.9 39 507-550 106-144 (436)
320 PTZ00293 thymidine kinase; Pro 90.0 1.3 2.7E-05 49.5 8.9 86 415-518 4-90 (211)
321 cd00561 CobA_CobO_BtuR ATP:cor 90.0 0.82 1.8E-05 48.8 7.1 135 417-557 4-150 (159)
322 PHA03372 DNA packaging termina 89.8 1.5 3.2E-05 55.4 10.0 149 399-560 187-350 (668)
323 COG1435 Tdk Thymidine kinase [ 89.7 2.3 4.9E-05 46.7 10.2 93 415-519 4-96 (201)
324 PRK13341 recombination factor 89.7 0.48 1E-05 62.0 6.1 41 505-550 109-149 (725)
325 PHA02544 44 clamp loader, smal 89.6 1.7 3.6E-05 51.2 10.2 40 504-543 99-138 (316)
326 PF05127 Helicase_RecD: Helica 89.6 0.19 4.2E-06 54.3 2.1 116 419-549 1-126 (177)
327 PRK09087 hypothetical protein; 89.6 1.4 3.1E-05 49.6 9.1 40 507-548 89-128 (226)
328 cd01121 Sms Sms (bacterial rad 89.5 1.1 2.3E-05 54.4 8.5 89 413-518 80-171 (372)
329 PRK05973 replicative DNA helic 89.4 0.39 8.4E-06 54.5 4.4 55 410-465 59-113 (237)
330 PF05729 NACHT: NACHT domain 89.4 1.3 2.8E-05 46.1 8.2 42 417-458 2-48 (166)
331 PF03796 DnaB_C: DnaB-like hel 89.4 1 2.2E-05 51.6 8.0 133 413-545 17-179 (259)
332 KOG1513 Nuclear helicase MOP-3 89.0 0.23 4.9E-06 62.7 2.4 143 401-545 265-453 (1300)
333 PRK05707 DNA polymerase III su 89.0 1.2 2.5E-05 53.2 8.2 124 402-543 5-143 (328)
334 TIGR02785 addA_Gpos recombinat 88.9 0.91 2E-05 63.2 8.3 114 401-516 2-126 (1232)
335 PRK14964 DNA polymerase III su 88.9 1.7 3.8E-05 54.4 9.9 107 416-543 36-153 (491)
336 COG2109 BtuR ATP:corrinoid ade 88.9 1.6 3.4E-05 47.5 8.2 132 418-558 31-178 (198)
337 TIGR03877 thermo_KaiC_1 KaiC d 88.8 0.43 9.4E-06 54.0 4.3 50 414-464 20-69 (237)
338 TIGR01547 phage_term_2 phage t 88.8 0.95 2.1E-05 55.2 7.5 121 417-549 3-143 (396)
339 PRK08769 DNA polymerase III su 88.7 3.5 7.7E-05 48.9 11.9 133 401-545 5-152 (319)
340 PF00004 AAA: ATPase family as 88.7 0.73 1.6E-05 46.2 5.5 16 418-433 1-16 (132)
341 PRK13342 recombination factor 88.6 1.3 2.8E-05 54.5 8.6 40 505-549 92-131 (413)
342 PRK14955 DNA polymerase III su 88.6 3 6.4E-05 51.1 11.6 37 502-542 124-163 (397)
343 KOG1133 Helicase of the DEAD s 88.6 0.61 1.3E-05 58.8 5.5 45 397-441 12-60 (821)
344 PF01443 Viral_helicase1: Vira 88.6 0.53 1.2E-05 52.5 4.8 75 418-518 1-75 (234)
345 PRK05896 DNA polymerase III su 88.5 2 4.3E-05 54.9 10.2 24 416-440 39-62 (605)
346 PRK05563 DNA polymerase III su 88.5 4.2 9.1E-05 52.1 13.2 48 369-435 11-58 (559)
347 TIGR03117 cas_csf4 CRISPR-asso 88.5 3.5 7.5E-05 53.2 12.4 123 674-839 460-615 (636)
348 cd01393 recA_like RecA is a b 88.4 0.88 1.9E-05 50.7 6.4 98 414-517 18-126 (226)
349 PRK13894 conjugal transfer ATP 88.3 0.69 1.5E-05 54.9 5.7 54 401-455 133-190 (319)
350 PF01637 Arch_ATPase: Archaeal 88.2 0.44 9.5E-06 52.6 3.8 40 415-454 20-59 (234)
351 KOG2028 ATPase related to the 88.2 0.64 1.4E-05 54.6 5.1 102 412-550 157-262 (554)
352 PRK13851 type IV secretion sys 88.2 0.64 1.4E-05 55.7 5.4 44 412-456 159-202 (344)
353 PRK00440 rfc replication facto 88.2 3.6 7.8E-05 48.2 11.7 19 417-435 40-58 (319)
354 PRK14959 DNA polymerase III su 88.1 3.5 7.6E-05 52.9 12.0 21 416-436 39-59 (624)
355 PHA00350 putative assembly pro 88.1 2.3 4.9E-05 51.9 9.9 31 418-449 4-35 (399)
356 PF05621 TniB: Bacterial TniB 88.1 1.1 2.3E-05 52.4 6.8 18 416-433 62-79 (302)
357 KOG0730 AAA+-type ATPase [Post 88.1 0.58 1.3E-05 59.0 5.0 56 369-432 429-485 (693)
358 cd01130 VirB11-like_ATPase Typ 88.0 0.95 2.1E-05 49.3 6.2 53 401-454 10-63 (186)
359 PRK04841 transcriptional regul 88.0 3 6.5E-05 56.3 12.2 42 507-548 123-164 (903)
360 PRK14723 flhF flagellar biosyn 87.9 4.5 9.7E-05 53.1 13.0 124 414-556 184-314 (767)
361 TIGR02782 TrbB_P P-type conjug 87.8 1.2 2.6E-05 52.4 7.2 94 401-515 117-214 (299)
362 TIGR02688 conserved hypothetic 87.7 1.6 3.5E-05 53.3 8.3 24 410-433 204-227 (449)
363 PRK00080 ruvB Holliday junctio 87.7 1.5 3.3E-05 52.1 8.2 48 371-433 22-69 (328)
364 TIGR00767 rho transcription te 87.6 0.42 9E-06 57.9 3.3 28 412-440 165-192 (415)
365 PRK08506 replicative DNA helic 87.6 1.3 2.7E-05 55.6 7.7 133 412-545 189-351 (472)
366 PF05496 RuvB_N: Holliday junc 87.4 1.3 2.7E-05 49.8 6.7 44 371-433 21-68 (233)
367 PRK10867 signal recognition pa 87.4 4.7 0.0001 49.9 12.2 119 416-547 101-226 (433)
368 TIGR01425 SRP54_euk signal rec 87.2 8.6 0.00019 47.5 14.2 120 416-548 101-226 (429)
369 PRK11331 5-methylcytosine-spec 87.2 1.1 2.3E-05 55.3 6.5 41 399-440 178-218 (459)
370 PRK06964 DNA polymerase III su 87.2 4.1 8.8E-05 48.9 11.2 39 503-545 130-171 (342)
371 PRK09111 DNA polymerase III su 87.1 4 8.7E-05 52.5 11.9 38 502-543 129-169 (598)
372 COG2909 MalT ATP-dependent tra 87.0 3.1 6.6E-05 54.2 10.5 42 507-548 131-172 (894)
373 PRK13695 putative NTPase; Prov 86.9 4.1 8.8E-05 43.7 10.2 30 417-446 2-31 (174)
374 PRK14948 DNA polymerase III su 86.8 3.4 7.4E-05 53.5 11.0 20 416-435 39-58 (620)
375 TIGR02639 ClpA ATP-dependent C 86.6 4.1 8.9E-05 53.9 11.9 25 415-439 203-227 (731)
376 PRK05748 replicative DNA helic 86.5 2.4 5.1E-05 52.8 9.2 133 412-545 200-364 (448)
377 PRK14957 DNA polymerase III su 86.4 2.7 5.9E-05 53.4 9.7 37 503-543 117-156 (546)
378 KOG0726 26S proteasome regulat 86.4 1.3 2.9E-05 50.7 6.2 69 369-465 180-249 (440)
379 COG0593 DnaA ATPase involved i 86.4 2.2 4.7E-05 52.1 8.4 104 416-549 114-221 (408)
380 PRK06090 DNA polymerase III su 86.3 5.2 0.00011 47.6 11.4 128 403-545 6-147 (319)
381 COG4962 CpaF Flp pilus assembl 86.3 1.2 2.6E-05 52.7 5.9 57 401-458 158-215 (355)
382 PRK14962 DNA polymerase III su 86.3 1.7 3.7E-05 54.4 7.7 19 417-435 38-56 (472)
383 PHA02542 41 41 helicase; Provi 86.1 2.3 5E-05 53.2 8.7 38 413-450 188-225 (473)
384 PRK07940 DNA polymerase III su 86.0 4.7 0.0001 49.3 11.2 54 372-435 3-56 (394)
385 PRK14721 flhF flagellar biosyn 85.9 7.4 0.00016 48.0 12.7 126 413-557 189-321 (420)
386 PRK07004 replicative DNA helic 85.7 2.4 5.2E-05 53.0 8.7 133 412-545 210-373 (460)
387 TIGR03878 thermo_KaiC_2 KaiC d 85.7 0.97 2.1E-05 52.0 4.9 37 414-450 35-71 (259)
388 COG2255 RuvB Holliday junction 85.6 1.8 4E-05 49.8 6.8 33 489-530 91-123 (332)
389 PF12846 AAA_10: AAA-like doma 85.5 1.1 2.4E-05 51.6 5.3 43 415-457 1-43 (304)
390 PRK10436 hypothetical protein; 85.5 1.5 3.2E-05 54.7 6.6 48 401-449 202-251 (462)
391 TIGR03880 KaiC_arch_3 KaiC dom 85.4 1 2.2E-05 50.4 4.8 51 414-465 15-65 (224)
392 PRK04328 hypothetical protein; 85.3 1.1 2.3E-05 51.4 4.9 37 414-450 22-58 (249)
393 PRK06067 flagellar accessory p 85.2 0.94 2E-05 51.1 4.4 51 414-465 24-74 (234)
394 TIGR03881 KaiC_arch_4 KaiC dom 85.2 0.91 2E-05 50.9 4.3 39 413-451 18-56 (229)
395 TIGR00416 sms DNA repair prote 85.2 4.5 9.7E-05 50.5 10.6 88 413-518 92-183 (454)
396 TIGR02237 recomb_radB DNA repa 85.1 0.92 2E-05 50.0 4.2 39 414-452 11-49 (209)
397 PRK11034 clpA ATP-dependent Cl 84.9 4.1 8.8E-05 53.9 10.5 35 402-436 192-228 (758)
398 PRK03992 proteasome-activating 84.8 5 0.00011 49.1 10.7 57 369-433 126-183 (389)
399 PRK14965 DNA polymerase III su 84.8 5.5 0.00012 51.2 11.5 38 502-543 116-156 (576)
400 PRK06904 replicative DNA helic 84.8 2.7 5.8E-05 52.7 8.5 134 410-544 216-382 (472)
401 COG0470 HolB ATPase involved i 84.7 4.1 9E-05 47.7 9.7 120 415-543 23-146 (325)
402 KOG1001 Helicase-like transcri 84.7 5.1 0.00011 52.1 11.0 133 417-557 154-305 (674)
403 TIGR00678 holB DNA polymerase 84.6 5 0.00011 43.6 9.6 109 416-543 15-133 (188)
404 PRK06871 DNA polymerase III su 84.3 9.6 0.00021 45.5 12.4 125 403-545 5-146 (325)
405 PRK14954 DNA polymerase III su 84.2 6.2 0.00013 51.0 11.5 38 502-543 124-164 (620)
406 PRK07471 DNA polymerase III su 84.2 4.4 9.6E-05 49.1 9.8 120 417-545 43-180 (365)
407 cd01129 PulE-GspE PulE/GspE Th 84.1 1.8 4E-05 50.0 6.2 49 401-450 64-115 (264)
408 cd00983 recA RecA is a bacter 84.0 1.6 3.4E-05 51.9 5.7 48 414-461 54-101 (325)
409 TIGR03346 chaperone_ClpB ATP-d 84.0 4.2 9.2E-05 54.7 10.4 20 415-434 194-213 (852)
410 TIGR00763 lon ATP-dependent pr 83.9 3.8 8.2E-05 54.6 9.8 26 414-440 346-371 (775)
411 PRK13900 type IV secretion sys 83.8 1 2.2E-05 53.8 4.0 89 412-515 157-245 (332)
412 KOG0058 Peptide exporter, ABC 83.7 3.5 7.6E-05 53.0 8.8 130 412-542 491-658 (716)
413 PRK09376 rho transcription ter 83.6 0.83 1.8E-05 55.2 3.1 28 412-440 166-193 (416)
414 cd01394 radB RadB. The archaea 83.5 1.2 2.6E-05 49.5 4.3 37 414-450 18-54 (218)
415 COG3973 Superfamily I DNA and 83.3 3.1 6.8E-05 52.1 7.8 64 403-466 212-283 (747)
416 TIGR00708 cobA cob(I)alamin ad 83.2 2.3 4.9E-05 46.1 6.0 34 417-450 7-40 (173)
417 PRK07133 DNA polymerase III su 83.1 7.7 0.00017 50.7 11.7 44 1182-1229 605-648 (725)
418 PF00437 T2SE: Type II/IV secr 83.0 1.3 2.8E-05 51.1 4.4 42 413-455 125-167 (270)
419 COG0467 RAD55 RecA-superfamily 82.9 1.3 2.9E-05 50.8 4.5 52 413-465 21-72 (260)
420 TIGR02538 type_IV_pilB type IV 82.7 2.1 4.6E-05 54.8 6.5 47 402-449 301-349 (564)
421 PRK09354 recA recombinase A; P 82.7 1.8 3.8E-05 51.9 5.4 46 414-459 59-104 (349)
422 PRK05636 replicative DNA helic 82.4 4.8 0.00011 50.8 9.4 39 412-450 262-301 (505)
423 KOG0739 AAA+-type ATPase [Post 82.3 28 0.00061 40.6 14.2 153 368-566 127-296 (439)
424 PRK08840 replicative DNA helic 82.3 3.7 8.1E-05 51.3 8.3 40 412-451 214-254 (464)
425 COG2812 DnaX DNA polymerase II 82.3 3.5 7.5E-05 51.8 7.9 38 502-543 116-156 (515)
426 PRK07399 DNA polymerase III su 82.3 8.1 0.00018 45.9 10.7 49 491-544 111-161 (314)
427 TIGR00959 ffh signal recogniti 82.3 9.6 0.00021 47.2 11.7 120 417-547 101-225 (428)
428 PF05876 Terminase_GpA: Phage 81.7 3.3 7.1E-05 53.0 7.7 126 397-531 13-162 (557)
429 PRK12608 transcription termina 81.7 1.1 2.4E-05 54.0 3.2 37 403-440 118-157 (380)
430 PRK14950 DNA polymerase III su 81.6 10 0.00022 49.0 12.0 21 416-436 39-59 (585)
431 PRK08006 replicative DNA helic 81.2 4.9 0.00011 50.4 8.8 134 411-545 220-385 (471)
432 cd01122 GP4d_helicase GP4d_hel 81.2 1.6 3.4E-05 50.3 4.2 40 412-451 27-67 (271)
433 TIGR02655 circ_KaiC circadian 81.1 1.6 3.4E-05 54.9 4.5 52 414-466 262-313 (484)
434 COG1132 MdlB ABC-type multidru 80.9 3.4 7.3E-05 53.0 7.5 65 412-476 352-419 (567)
435 COG3972 Superfamily I DNA and 80.7 6.4 0.00014 48.4 9.0 79 380-467 150-230 (660)
436 COG0468 RecA RecA/RadA recombi 80.7 3 6.5E-05 48.5 6.2 52 415-466 60-111 (279)
437 KOG2228 Origin recognition com 80.7 6.9 0.00015 46.2 8.9 120 415-546 49-181 (408)
438 PRK06647 DNA polymerase III su 80.6 16 0.00035 46.9 13.2 134 369-543 11-156 (563)
439 CHL00176 ftsH cell division pr 80.1 6.8 0.00015 50.9 9.8 57 369-433 178-234 (638)
440 PRK09361 radB DNA repair and r 80.0 1.9 4.1E-05 48.2 4.3 39 414-452 22-60 (225)
441 PRK10865 protein disaggregatio 79.9 5.1 0.00011 53.9 8.9 21 415-435 199-219 (857)
442 TIGR02788 VirB11 P-type DNA tr 79.6 1.7 3.7E-05 51.4 3.9 88 412-515 141-228 (308)
443 PRK07414 cob(I)yrinic acid a,c 79.5 3.3 7.2E-05 45.0 5.6 128 417-547 23-159 (178)
444 TIGR02858 spore_III_AA stage I 79.4 12 0.00026 43.5 10.6 25 416-441 112-136 (270)
445 KOG0742 AAA+-type ATPase [Post 79.4 4.8 0.0001 48.3 7.3 17 416-432 385-401 (630)
446 PRK10917 ATP-dependent DNA hel 79.3 8 0.00017 50.8 10.2 80 684-798 309-389 (681)
447 PRK09165 replicative DNA helic 79.1 5.8 0.00013 50.1 8.6 40 412-451 214-268 (497)
448 TIGR00602 rad24 checkpoint pro 79.0 9.9 0.00021 49.3 10.6 50 369-433 79-128 (637)
449 COG1110 Reverse gyrase [DNA re 78.9 4.6 9.9E-05 53.5 7.5 83 670-785 110-192 (1187)
450 TIGR02655 circ_KaiC circadian 78.8 2 4.2E-05 54.1 4.3 51 414-465 20-71 (484)
451 PF02534 T4SS-DNA_transf: Type 78.8 1.6 3.5E-05 54.4 3.6 55 416-472 45-100 (469)
452 TIGR01243 CDC48 AAA family ATP 78.8 4.2 9.1E-05 53.9 7.5 57 369-433 173-230 (733)
453 PRK08760 replicative DNA helic 78.7 3.8 8.3E-05 51.4 6.7 132 412-545 226-388 (476)
454 TIGR02868 CydC thiol reductant 78.7 4.9 0.00011 51.0 7.9 21 412-432 358-378 (529)
455 cd03239 ABC_SMC_head The struc 78.6 6.1 0.00013 42.9 7.5 41 504-544 115-156 (178)
456 TIGR02974 phageshock_pspF psp 78.6 8 0.00017 46.2 9.1 29 405-433 12-40 (329)
457 TIGR02397 dnaX_nterm DNA polym 78.5 15 0.00032 43.9 11.5 108 416-542 37-153 (355)
458 TIGR02533 type_II_gspE general 78.5 3 6.4E-05 52.5 5.7 47 401-448 226-275 (486)
459 PRK06995 flhF flagellar biosyn 78.4 12 0.00027 46.8 11.0 115 414-547 255-377 (484)
460 COG0552 FtsY Signal recognitio 78.4 15 0.00033 43.5 11.0 129 417-557 141-281 (340)
461 PF04408 HA2: Helicase associa 78.3 2.3 5E-05 41.8 3.7 55 1188-1244 3-59 (102)
462 COG1197 Mfd Transcription-repa 78.2 4.6 9.9E-05 54.5 7.4 78 435-518 795-886 (1139)
463 PRK14970 DNA polymerase III su 78.2 14 0.00031 44.5 11.3 20 416-435 40-59 (367)
464 TIGR01243 CDC48 AAA family ATP 78.1 5.5 0.00012 52.8 8.3 57 369-433 448-505 (733)
465 TIGR03743 SXT_TraD conjugative 77.9 2.5 5.4E-05 54.8 4.9 53 415-467 176-230 (634)
466 KOG0732 AAA+-type ATPase conta 77.9 4.2 9E-05 54.5 6.9 140 369-545 260-413 (1080)
467 COG0630 VirB11 Type IV secreto 77.7 3.6 7.9E-05 48.7 5.8 99 401-515 128-227 (312)
468 PF00154 RecA: recA bacterial 77.6 2.8 6E-05 49.8 4.8 84 415-517 53-143 (322)
469 TIGR03345 VI_ClpV1 type VI sec 76.6 11 0.00024 50.8 10.4 34 417-451 598-631 (852)
470 TIGR03754 conj_TOL_TraD conjug 76.5 2.9 6.3E-05 53.8 4.9 51 415-465 180-232 (643)
471 KOG0738 AAA+-type ATPase [Post 76.5 6.1 0.00013 47.4 7.0 54 369-432 207-262 (491)
472 TIGR01241 FtsH_fam ATP-depende 76.3 14 0.0003 46.7 10.9 57 369-433 50-106 (495)
473 COG2805 PilT Tfp pilus assembl 76.3 3.7 8.1E-05 47.8 5.1 42 417-459 127-178 (353)
474 cd01126 TraG_VirD4 The TraG/Tr 76.2 1.6 3.4E-05 53.1 2.4 54 417-472 1-55 (384)
475 COG1219 ClpX ATP-dependent pro 76.2 1.6 3.5E-05 50.8 2.2 20 414-433 96-115 (408)
476 PF03969 AFG1_ATPase: AFG1-lik 76.0 12 0.00026 45.4 9.6 105 415-547 62-169 (362)
477 PRK13764 ATPase; Provisional 75.5 3.5 7.5E-05 52.9 5.2 34 413-447 255-288 (602)
478 PF02572 CobA_CobO_BtuR: ATP:c 75.5 5 0.00011 43.5 5.6 125 417-547 5-140 (172)
479 PF13481 AAA_25: AAA domain; P 75.4 3.6 7.9E-05 44.5 4.7 50 414-464 31-90 (193)
480 KOG2004 Mitochondrial ATP-depe 75.4 7.6 0.00017 49.8 7.8 107 401-534 416-534 (906)
481 TIGR02640 gas_vesic_GvpN gas v 75.3 6.1 0.00013 45.5 6.7 28 407-434 13-40 (262)
482 PF08423 Rad51: Rad51; InterP 75.2 3.9 8.5E-05 47.1 5.1 104 408-517 26-145 (256)
483 cd01131 PilT Pilus retraction 75.0 3.5 7.5E-05 45.5 4.4 34 417-451 3-38 (198)
484 PRK07993 DNA polymerase III su 74.5 31 0.00066 41.4 12.5 126 403-544 5-146 (334)
485 PRK14971 DNA polymerase III su 74.0 20 0.00044 46.5 11.6 39 501-543 117-158 (614)
486 TIGR03819 heli_sec_ATPase heli 74.0 4.7 0.0001 48.4 5.5 55 401-456 163-218 (340)
487 PRK05342 clpX ATP-dependent pr 73.9 6.7 0.00014 48.3 6.9 19 415-433 108-126 (412)
488 PRK08699 DNA polymerase III su 73.8 17 0.00037 43.4 10.2 133 402-543 3-150 (325)
489 COG0464 SpoVK ATPases of the A 73.8 10 0.00022 47.8 8.8 57 368-432 236-293 (494)
490 PF06733 DEAD_2: DEAD_2; Inte 73.8 1.3 2.8E-05 47.7 0.6 41 480-520 118-160 (174)
491 COG0210 UvrD Superfamily I DNA 73.5 9.6 0.00021 49.8 8.7 84 400-495 2-90 (655)
492 COG3451 VirB4 Type IV secretor 73.4 3.5 7.5E-05 54.8 4.6 40 416-455 437-477 (796)
493 cd01127 TrwB Bacterial conjuga 73.3 3.4 7.4E-05 50.8 4.2 43 414-456 41-83 (410)
494 PHA00012 I assembly protein 72.9 27 0.00059 41.5 11.0 34 418-451 4-37 (361)
495 PRK06305 DNA polymerase III su 72.9 19 0.00041 45.0 10.6 23 416-438 40-62 (451)
496 PRK09302 circadian clock prote 72.3 4.3 9.3E-05 51.4 4.9 37 414-450 30-67 (509)
497 TIGR02524 dot_icm_DotB Dot/Icm 72.3 6.2 0.00013 47.7 6.0 26 414-440 133-158 (358)
498 PRK14953 DNA polymerase III su 72.2 21 0.00045 45.0 10.8 18 502-519 116-133 (486)
499 COG1221 PspF Transcriptional r 72.0 13 0.00028 45.5 8.6 114 413-550 99-226 (403)
500 cd01128 rho_factor Transcripti 72.0 2.1 4.5E-05 49.1 1.8 21 412-432 13-33 (249)
No 1
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=7.5e-233 Score=2054.86 Aligned_cols=1228 Identities=47% Similarity=0.719 Sum_probs=1007.7
Q ss_pred cccceeeeccccceeEEeeccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHhhcCCCCCCCCCCchhccCCCCcc
Q 039491 9 ELAFRVGFSGHSGHLRVEPLYTVEDRTDPIKSLPDFILPPAFPRETAESIKEHIEDKYLSMGLDTNEFSPEKVGRQWDFD 88 (1379)
Q Consensus 9 ~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~ 88 (1379)
+|-||++|+||||| +++-.+. -+-++|+ ..++ .+ ..+..+ +.||.|+.++|+.|.+.+|..|+++
T Consensus 4 ~l~~~~~~v~~~~~--~~~~~~~----~~~~~~~-~~~~--~~-----~a~~~~-~~fl~~s~~l~~~~~~~~~~~~~~~ 68 (1248)
T KOG0947|consen 4 ELGFRLGEVGHGGH--VELFLDG----IRDDSLN-SMLS--IP-----YAKVRV-DIFLKPSAALPFDRQNPSQEKWNRK 68 (1248)
T ss_pred hhhhhhhhhhcCCc--ceeccCC----Ccccccc-cCCC--Cc-----hhHHHH-HHHhCCccccCccccCcchhhhccc
Confidence 78999999999999 4443332 2333444 2223 11 333434 8899999999999999999999999
Q ss_pred ccccccccCCCCCCcceeccccccCeeecCCCC-cccceeeeecccccCccCCCCCCCCCCCCcCccccCCCCCCCCCCC
Q 039491 89 WFEMAKVPLEPSLAQSVVAPVWEVPFRRQTKQG-KWEPNSVDVSELMLGAQDSGPLPRVAGPAKDFVRGSINSRPFRPGG 167 (1379)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g-~~~~~~~~~~~~~~~~~~s~s~~r~~~~~~~~~rg~~~~~pf~pgg 167 (1379)
.++.+|+..+.++.||.++ |+|+|++| |+||+|+..+..+++|+||+|+.|.|||+.+++||+++|+||||||
T Consensus 69 ~d~~sll~~p~~p~~~~~~------fqr~~~egki~gyke~ll~~~~~~a~~S~sf~r~p~~~~~~~rgs~~n~pF~pg~ 142 (1248)
T KOG0947|consen 69 DDYKSLLKVPDAPARTEIQ------FQRHGTEGKIIGYKEVLLEVVNLSASTSLSFFRFPGPALNSLRGSPPNFPFTPGG 142 (1248)
T ss_pred CCHHHHhcCCCCCCccccc------eeeccccCceecchhhhhhhhccccccceeeecCCCCccccccCCCCCCCcCCCC
Confidence 9999999999999999995 99999999 9999999666678999999999999999999999999999999999
Q ss_pred ccccccccccccCCCCCcchhHhHhcCCCCcccCCccccCCCCCccccccccccccccccccccccccchhhhhhccchh
Q 039491 168 LEDSQSLERILPDGASNGEWVQEILKGGPAQVVPPSFKQGLDLGELQAYPCLWNVYKDQDQSSLKSTSDEKLNELSVQFD 247 (1379)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1379)
+++.....+ ....+++..++.++++|++|||||++|+++..... ...+ .. . .+++
T Consensus 143 i~~~~~~~~----~st~~~~~~~L~fk~~L~~vpP~~~q~~~~~~~~~------~~e~-----~~--~------~~~~-- 197 (1248)
T KOG0947|consen 143 IEEPNIAGE----TSTSGEESKELSFKDDLLTVPPGFSQGLDPMESDS------ETEA-----EN--P------KSIN-- 197 (1248)
T ss_pred CCCcccccC----cccchhhhhhcccCCccccCCcchhcccCCccCCC------CCcc-----cC--c------cchh--
Confidence 986653322 22346788888999999999999999999844321 1111 00 0 0001
Q ss_pred HhhhhhhhhhhhhhccCCCCchhhhhhhhhccCCCCchhhhhhhhhhhhccccceecccccccccCCCCCCCCCCC-Ccc
Q 039491 248 DLFKKAWEEDVAEFEKDDWLPNRIKIMLYWRLHPFGNMQHKLKRKKVLFACGFLVYNYFSSYQSCYLGPQLEPESI-DSD 326 (1379)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 326 (1379)
+.+.+ .+ ... .+. -.+..+++ ....+.++. +.+
T Consensus 198 ~~~de---~D---~~~-e~~----------~~~~~~~~-----------------------------~~~~~i~~e~~~~ 231 (1248)
T KOG0947|consen 198 DMLDE---LD---LVN-EYN----------IHKVAESV-----------------------------KKSESIESEEEAD 231 (1248)
T ss_pred hhccc---cc---ccc-hhh----------hhhhhhcc-----------------------------cCcCCCCcchhhc
Confidence 22211 00 000 000 00000111 000111100 000
Q ss_pred ccCCcccCCCCCcccChhhhhhhhccCCCCCcccCCCCCCccccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHH
Q 039491 327 AEGKTTVGFNSVKEADLSVLDEILSVKSGGTTSILDDGGGQQQKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQK 406 (1379)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~ 406 (1379)
+ ..+....+..++|++++.+...... .|.......+..|+++++...+.++|++++|+|+..|||+||+||+
T Consensus 232 e-------~~s~~~~~~~~iddli~~~~~~~v~-~p~a~t~~~k~~wa~~vd~~~~~~df~~lVpe~a~~~pFelD~FQk 303 (1248)
T KOG0947|consen 232 E-------EVSAGNEDDSEIDDLIPEETEFSVD-TPEASTRPVKFEWAHVVDLSSLVEDFYQLVPEMALIYPFELDTFQK 303 (1248)
T ss_pred c-------cccccccccccccccccccceeeec-CccccCCCccccceeeeecccchHHHHHhchhHHhhCCCCccHHHH
Confidence 0 1122333455678888877654422 2223334458899999999999999999999999999999999999
Q ss_pred HHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEEEecCcccCCCCcee
Q 039491 407 EAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVSLRPEASCL 485 (1379)
Q Consensus 407 eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~in~~a~Il 485 (1379)
+||+++++|++|||+|||+||||+||+|||+.+.+|++|+|||+|+|||+||+||+|++.| +||++|||+++||+|+|+
T Consensus 304 ~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~DvgLlTGDvqinPeAsCL 383 (1248)
T KOG0947|consen 304 EAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGDVGLLTGDVQINPEASCL 383 (1248)
T ss_pred HHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccccceeecceeeCCCcceE
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred eecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEE
Q 039491 486 IMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIR 565 (1379)
Q Consensus 486 V~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~ 565 (1379)
||||||||+|||+|++.+++++|||||||||++|.+||+|||++|+|||+|+++|+||||+||+.|||+|+|+++++.++
T Consensus 384 IMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATVPN~~EFA~WIGRtK~K~Iy 463 (1248)
T KOG0947|consen 384 IMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATVPNTLEFADWIGRTKQKTIY 463 (1248)
T ss_pred eehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceEEEEeccCCChHHHHHHhhhccCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCcCceEEEeecCceeeecc-CcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCC
Q 039491 566 VTGTTKRPVPLEHCLYYSGEFYKVCE-NEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGK 644 (1379)
Q Consensus 566 vi~t~~RpvpLe~~l~~~~~l~~i~d-~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr 644 (1379)
|++|.+|||||+||+|..+.+++|++ ++.|...+++.+.+...+..+.... ....++++++.+. ++|+
T Consensus 464 ViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~-------~~~~~~~~rgs~~----~ggk 532 (1248)
T KOG0947|consen 464 VISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDV-------EKSDARGGRGSQK----RGGK 532 (1248)
T ss_pred EEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccc-------ccccccccccccc----cCCc
Confidence 99999999999999999999999998 8889999898887776521111100 0111122222221 2333
Q ss_pred CCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHH
Q 039491 645 QNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCD 724 (1379)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~ 724 (1379)
++.+.+ +.++.+. +..++. .+.|..++++|.+.+..|+|||||||++|+++|+.|.+.++++..||++++.|++
T Consensus 533 ~~~~~g--~~r~~~~---~~nrr~-~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~ 606 (1248)
T KOG0947|consen 533 TNYHNG--GSRGSGI---GKNRRK-QPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLS 606 (1248)
T ss_pred CCCCCC--Ccccccc---cccccc-cchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHH
Confidence 332221 1111111 111111 2679999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccC
Q 039491 725 KAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFD 804 (1379)
Q Consensus 725 ~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfD 804 (1379)
++..+|+++||+|||+..++++|.||||+||||++|+.|+.||.+|++|.+||||||+|||||||||+++|||++++|||
T Consensus 607 k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhD 686 (1248)
T KOG0947|consen 607 KAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHD 686 (1248)
T ss_pred HHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHHhcCCCcccccccccHHHHHHHHhhccccHHHH
Q 039491 805 GREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQFRLTYIMILHLLRVEELKVEDM 884 (1379)
Q Consensus 805 g~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li~g~~~~L~S~f~lty~miLnLlr~e~~~~e~~ 884 (1379)
|.+||.++|+||+||+|||||||.|.+|+||++|.+..|+.+.+++|+.|.+.+|+||||+||+|||||||++.+++|+|
T Consensus 687 G~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G~~~~L~SQFRlTY~MILnLLRve~lrvEdm 766 (1248)
T KOG0947|consen 687 GNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMGGPTRLESQFRLTYGMILNLLRVEALRVEDM 766 (1248)
T ss_pred CcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HhhChhhHHhcCCcHHHHHHHHHHHcCCCCccc---ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhcCCCce
Q 039491 885 LKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTIE---CIKGEPAIEEYYDMYYEAEKYNNQITEAFMQS--AHQFLMPGRV 959 (1379)
Q Consensus 885 l~~SF~e~~~~~~~~~~~~~l~~~l~~~~~~i~---c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~Grl 959 (1379)
|+|||++|..++..|++++++ .+++.++..++ |..+..++..|+....++.+++.+++...+++ +++.|+.||+
T Consensus 767 ~krSf~E~~s~~~~~~~eq~l-~~~~eel~sie~s~c~~~~~~l~kyl~a~~e~~e~~~~l~~~~~~s~~~~~~l~~GR~ 845 (1248)
T KOG0947|consen 767 MKRSFSEFVSQRLSPEHEQEL-KELDEELLSIEESDCAIDLKDLRKYLSAYEEITEYNEKLREEKMKSANILRILKEGRV 845 (1248)
T ss_pred HHHHhhhhhhhhcCHHHHHHH-HHHHHHHhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCcE
Confidence 999999999999999999999 99888888877 45566889999999999999999999977777 9999999999
Q ss_pred EEEecCCCCCcceEEEEecCCCCCCceEEEEEcCCCCCCcccccCCCCCCCCCCcccccCCCCC-------ceeEeeccc
Q 039491 960 LFVKSQTGQDHLLGAVVKAPSANNKEYIVMLLKPDLPSASETSLDKKSGDFSEGYFVIPKSKRG-------LEEEYCGSV 1032 (1379)
Q Consensus 960 v~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 1032 (1379)
|++++ .+....+|||+....+.+..+.+.......+..+ .+. .+.+.+. +.+.+..-.+ ....+|+..
T Consensus 846 vv~k~-~~~~~~lg~vl~~s~~t~~~~~~~~~~~~~p~~~-~~~-~~~~s~a--~~~~p~~l~af~~~~~~~~~~~~~~~ 920 (1248)
T KOG0947|consen 846 VVLKN-LKEENNLGVVLKVSLNTNGRVCVVLVAYLKPLDN-KNG-SLDPSFA--LNLIPDSLLAFEKFFPNVPRNVPLGS 920 (1248)
T ss_pred EEEcC-hhhhcccceEEEEecCCCcceEEEEEeeccCCcC-cCC-CcCcccc--cccCcchhhccccccCCcccccceec
Confidence 99998 5677899999998765444433332211111110 000 0000000 1000000000 000011000
Q ss_pred ccccccceeeeecCCCCccCCccceeeccccccccccccccccccccCccCchhHHHHHHHHHHHHHhccCCCCCCCCCC
Q 039491 1033 SHRKGSGVINIKLPYHGAAAGVSYEVRGIDKKELLCICNCKIKIDQVGLLEDVSSAAFSKTVQQLLVLKSDEKKYPQALD 1112 (1379)
Q Consensus 1033 ~~i~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1112 (1379)
...+| -.+....+..++ .|+.+|.+.++... ....+....++....+++..+.....+.++..+
T Consensus 921 ---------~~~~~----~~~v~~~~~g~~--~ie~l~~~~~~~~~-~~~~D~~~aal~~~~~~~l~l~~~~~~~~~~~e 984 (1248)
T KOG0947|consen 921 ---------LNPLY----LSGVTAYVKGVP--NIEILCGDALRQII-GKVADGQKAALNESTAQVLDLLEGSLETPTWKE 984 (1248)
T ss_pred ---------ccccc----hhccchhhcCCc--chhhhhcccccccc-ccccccHHHHHHHHHHHhhhhhhcCccCcchhh
Confidence 00111 011111223344 44444444443332 122457788888888888877665544577889
Q ss_pred hhhhcccCchhHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcHHhhhchhHHHHHHHHHh
Q 039491 1113 PVKDLKLKDMNLVEAYYKWAGLLRKMAANKCHGCIKLEEHMKLTKENKRHKDEVNTLKFQMSDEALQQMPDFQGRIDVLK 1192 (1379)
Q Consensus 1113 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~c~~~~~h~~~~~~~~~l~~~i~~l~~~ls~~~l~l~~e~~~r~~VL~ 1192 (1379)
|+++.+.++.++.+...++.++++.+...||++||+|.+||....++++++.++++|+.++|+++|.++|+|++|++||+
T Consensus 985 pv~~~k~kd~e~~~~~l~~~n~~~~~~~~~~i~c~~f~~h~s~~~~~~~~~~ei~~L~~~~sd~~L~l~pey~~RlevLk 1064 (1248)
T KOG0947|consen 985 PVNDSKLKDDEVVEMLLERTNLQNLIQGNPCISCPKFDQHYSLARREYKIEKEIENLEFELSDQSLLLSPEYHNRLEVLK 1064 (1248)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHhcCCccCCccHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCcccCCCccchhhHHhhhccCCchHHHHHHhhhcCCCCCCHHHHHHHhheeeeeccCCCCCCCChHHHHHHHHHHHHH
Q 039491 1193 EIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEAVAIMSAFVFQQRNTSEPSLTPKLSVAKERLYNTA 1272 (1379)
Q Consensus 1193 ~LgyID~~~~v~lKGrvAceI~s~~EL~lTEll~~n~l~~l~p~eiaAlLS~fV~q~k~~~~p~l~~~L~~~~~~i~~ia 1272 (1379)
.+||||+..+|++||||||||||++|||||||||+|.|.+|+|+|||||||+||||++++..|.++|.|+++.+++.+++
T Consensus 1065 ~~g~vD~~~~V~lkGRvAceI~s~~ELllteli~dn~l~~l~peeiaallSslV~e~~~e~~~~~~~~l~k~~e~v~~v~ 1144 (1248)
T KOG0947|consen 1065 PLGFVDEMRTVLLKGRVACEINSGNELLLTELIFDNALVDLSPEEIAALLSSLVCEGKTERPPTLTPYLKKGKERVRDVA 1144 (1248)
T ss_pred hcCcccccceeeecceeeeeecCCcchhHHHHHHhhhhhhcCHHHHHHHHHHHHhcCccccCCCCChhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHcCCCCChh-hhhhcCCCccHHHHHHHHhCCCCHHHHHhhcCCCCCceehhhhhHHHHHHHHHHhhhhcCCH
Q 039491 1273 IRLGELQAHFKVQIDPE-EYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIMGNS 1351 (1379)
Q Consensus 1273 ~~i~~~~~~~~v~~~~~-~~~~~~~~f~l~~vvyeWA~G~sF~~I~~~Tdv~EG~IVR~i~RLdEl~rqv~~Aa~~igd~ 1351 (1379)
++|.++|..|++.++++ +|... ++||||+|||+||+|+||++||++|+++||+|||||+||||+|||+++||++||||
T Consensus 1145 ~rl~ev~~~~~~~~~~~e~f~~~-lrF~l~evVYeWA~G~sf~eim~~t~~~EG~iVR~I~RLdE~cre~~~aa~ivGd~ 1223 (1248)
T KOG0947|consen 1145 KRLEEVQSSHQLLQTPEEEFPCE-LRFGLVEVVYEWARGLSFKEIMELTDVLEGLIVRLIQRLDEVCRELRNAARIVGDP 1223 (1248)
T ss_pred HHHHHHHHhhccccCchhhcccc-ccccHHHHHHHHHcCCCHHHHHhhhCCcchhHHHHHHHHHHHHHhhhccceecCcH
Confidence 99999999999999976 56666 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeeeeccccc
Q 039491 1352 ALYKKMETASNAIKRDIVFAASLYI 1376 (1379)
Q Consensus 1352 ~L~~Km~~a~~~IkRdIVf~~SLY~ 1376 (1379)
.|+.||++|+++||||||||||||+
T Consensus 1224 ~L~~Km~~as~~ikRdIVFaaSLY~ 1248 (1248)
T KOG0947|consen 1224 VLHEKMEAASALIKRDIVFAASLYL 1248 (1248)
T ss_pred HHHHHHHHHHHHhccCccchhhccC
Confidence 9999999999999999999999997
No 2
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.3e-198 Score=1724.84 Aligned_cols=903 Identities=41% Similarity=0.694 Sum_probs=844.4
Q ss_pred hhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEE
Q 039491 392 DLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVG 470 (1379)
Q Consensus 392 ~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~Vg 470 (1379)
.+|++|||+|||||+.||.+++++++|+|+|||+||||+||+|||+++++..+|+|||+|+|||+||+||+|...| +||
T Consensus 121 ~pAk~YPF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVG 200 (1041)
T KOG0948|consen 121 PPAKTYPFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVG 200 (1041)
T ss_pred CcccCCCcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccc
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEecCcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChH
Q 039491 471 LLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTV 550 (1379)
Q Consensus 471 lltGdv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~ 550 (1379)
++|||+++||+|+||||||||||+|||+|+..++.|.||||||+|||.|.+||+|||+.|++||++++.++||||+||+.
T Consensus 201 LMTGDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSATiPNA~ 280 (1041)
T KOG0948|consen 201 LMTGDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSATIPNAR 280 (1041)
T ss_pred eeecceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEeccCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEccCCCCcCceEEEeec--Cceeeecc-CcccchhhHHHHHHHHHhhccccccCCCCCCCCCCC
Q 039491 551 EFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYS--GEFYKVCE-NEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASS 627 (1379)
Q Consensus 551 efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~--~~l~~i~d-~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 627 (1379)
+||+|+...+++||+|+.|++||+||+||+|+. +++|.++| ++.|...+|.+++..+......+...
T Consensus 281 qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~---------- 350 (1041)
T KOG0948|consen 281 QFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKK---------- 350 (1041)
T ss_pred HHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcccc----------
Confidence 999999999999999999999999999999994 59999999 89999999999999987754332111
Q ss_pred CcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhc
Q 039491 628 PRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSG 707 (1379)
Q Consensus 628 ~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~ 707 (1379)
+ ....|+. |+..+++ .....+..+++.+..++..|+|||+||++.||.+|-.+.+
T Consensus 351 --~--------~~~k~~k------G~~~~~~---------~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~k 405 (1041)
T KOG0948|consen 351 --K--------ANKKGRK------GGTGGKG---------PGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSK 405 (1041)
T ss_pred --c--------ccccccc------CCcCCCC---------CCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhcc
Confidence 0 0000000 0000111 1245688999999999999999999999999999999999
Q ss_pred CCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEeccccccc
Q 039491 708 IDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMG 787 (1379)
Q Consensus 708 ~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~G 787 (1379)
++++++.|+..+..++++++..|.++||.|||+..+.++|+||||+|||||+|+.|+.||.+|++|++||||||+||++|
T Consensus 406 ldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiG 485 (1041)
T KOG0948|consen 406 LDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIG 485 (1041)
T ss_pred CcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHHhcCCCcccccccccH
Q 039491 788 VNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQFRLTY 867 (1379)
Q Consensus 788 INiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li~g~~~~L~S~f~lty 867 (1379)
+|||++||||.+.+||||..||+++.+||+||+|||||||.|..|+||+|.++.+ ++...+.|++|.+++|.|+|++||
T Consensus 486 LNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm-~~~~ak~m~kG~aD~LnSaFhLtY 564 (1041)
T KOG0948|consen 486 LNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKM-EPQVAKDMLKGSADPLNSAFHLTY 564 (1041)
T ss_pred cCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcC-CHHHHHHHhcCCCcchhhhhhhHH
Confidence 9999999999999999999999999999999999999999999999999999998 899999999999999999999999
Q ss_pred HHHHHHHhhccccHHHHHhhChhhHHhcCCcHHHHHHHHHHHcCCCCcccccCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 039491 868 IMILHLLRVEELKVEDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTIECIKGEPAIEEYYDMYYEAEKYNNQITEAFM 947 (1379)
Q Consensus 868 ~miLnLlr~e~~~~e~~l~~SF~e~~~~~~~~~~~~~l~~~l~~~~~~i~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1379)
||||||||+|+++++.|+++||.|||+.+.+|.+++++ .++++++..+. +.++..+.+||++..+++++.+++.+.+.
T Consensus 565 nMiLNLlRvEei~pe~~l~~SF~QFQ~~~~~P~i~~kl-~~~~~~~~~i~-i~~E~~v~~yh~l~~ql~~~~k~i~~~~~ 642 (1041)
T KOG0948|consen 565 NMILNLLRVEEISPEYMLERSFHQFQNYKALPDIEEKL-KQLEEELDSIN-IPNEEEVKEYHDLELQLEKYGKDIREVIT 642 (1041)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhhhhhcchHHHHH-HHHHHHhhccc-CCChHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999 99999999988 67788999999999999999999999999
Q ss_pred HH--HhhhcCCCceEEEecCCCCCcceEEEEecC-----CC------CCCceEEEEEcCCCCCCcccccCCCCCCCCCCc
Q 039491 948 QS--AHQFLMPGRVLFVKSQTGQDHLLGAVVKAP-----SA------NNKEYIVMLLKPDLPSASETSLDKKSGDFSEGY 1014 (1379)
Q Consensus 948 ~~--~~~~l~~Grlv~~~~~~~~~~~~gv~~~~~-----~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1014 (1379)
+| ++.+|++||||.+.. ++.++.|||++++. .. .+..|+|.+++++......... ....
T Consensus 643 ~P~~~l~fLq~GRlV~v~~-g~~d~~WGvvv~f~k~~~~~~~~~~~~p~e~Y~vdvll~~~~~~~~~~~-------~~~~ 714 (1041)
T KOG0948|consen 643 HPKYCLPFLQPGRLVKVKV-GGDDFFWGVVVNFIKRKNSSKNSDQVGPHESYIVDVLLHCSTESSPVGA-------KKVN 714 (1041)
T ss_pred CcchhcccccCCceEEEec-CCCCCceeEEEEEEeccCCCCCccccCCCcceEEEEEeeeecccccccc-------CcCC
Confidence 88 999999999999998 77788999999753 11 1247999999988765532111 1111
Q ss_pred ccccCCCCCceeEeecccccccccceeeeecCCCCccCCccceeeccccccccccccccccccccCccCchhHHHHHHHH
Q 039491 1015 FVIPKSKRGLEEEYCGSVSHRKGSGVINIKLPYHGAAAGVSYEVRGIDKKELLCICNCKIKIDQVGLLEDVSSAAFSKTV 1094 (1379)
Q Consensus 1015 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 1094 (1379)
.|+..++++.+.++|+.++.|++++.+++++| . +++....+..+.+++
T Consensus 715 ~p~~~~ek~~~~vvpv~l~~i~~is~~r~~iP-------------------------------~-dl~~~d~r~~~~k~v 762 (1041)
T KOG0948|consen 715 VPPRPNEKGEMEVVPVLLTLIDAISSIRLYIP-------------------------------K-DLRSVDARLSVLKAV 762 (1041)
T ss_pred CCCCCCCCCceEEEeeeHHHHhhhhHHHhcCc-------------------------------c-cccCcchHHHHHHHH
Confidence 34445678899999999999999999999999 2 666677899999999
Q ss_pred HHHHHhccCCCCCCCCCChhhhcccCchhHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039491 1095 QQLLVLKSDEKKYPQALDPVKDLKLKDMNLVEAYYKWAGLLRKMAANKCHGCIKLEEHMKLTKENKRHKDEVNTLKFQMS 1174 (1379)
Q Consensus 1095 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~c~~~~~h~~~~~~~~~l~~~i~~l~~~ls 1174 (1379)
+++.++++.+ +|.++|++||++++.++.+...+++.++.++..||.|+.++..+.++.+.++..|..++.+|+..++
T Consensus 763 ~e~~~rfp~g---ip~LdPv~dM~I~~~~~~~~~~k~e~lE~~l~~hp~~k~~~~~~~~~~f~~K~~l~~~ik~lk~~l~ 839 (1041)
T KOG0948|consen 763 QEVKSRFPDG---IPLLDPVKDMNIKDVEFKKLVKKIESLEARLESHPLHKSSELEELYKEFQRKETLRAEIKDLKAELK 839 (1041)
T ss_pred HHHHHhcCCC---CCCcChhhccCccchHHHHHHHHHHHHHHhhccCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HhhhchhHHHHHHHHHhHcCcccCCCccchhhHHhhhccCCchHHHHHHhhhcCCCCCCHHHHHHHhheeeeeccCCC
Q 039491 1175 D-EALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEAVAIMSAFVFQQRNTS 1253 (1379)
Q Consensus 1175 ~-~~l~l~~e~~~r~~VL~~LgyID~~~~v~lKGrvAceI~s~~EL~lTEll~~n~l~~l~p~eiaAlLS~fV~q~k~~~ 1253 (1379)
+ +.+.+++|+++|.+|||+|||++.+++|.+||||||||+|+|||+||||||+|+|++|+||++||||||||||+|..+
T Consensus 840 ~~~~i~~ldELk~RkRVLrrLG~~t~ddvie~KGrvACEIsSgDELlLTEliFnG~Fndl~~eq~aaLLSCfVf~eks~e 919 (1041)
T KOG0948|consen 840 SSQAILQLDELKNRKRVLRRLGYCTSDDVIELKGRVACEISSGDELLLTELIFNGIFNDLPVEQAAALLSCFVFQEKSSE 919 (1041)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEcceEEEEecccchHHHHHHHHhccccCCCHHHHHHHHhheeehhcccc
Confidence 8 889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhcCCCccHHHHHHHHhCCCCHHHHHhhcCCCCCceehhhhh
Q 039491 1254 EPSLTPKLSVAKERLYNTAIRLGELQAHFKVQIDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVR 1333 (1379)
Q Consensus 1254 ~p~l~~~L~~~~~~i~~ia~~i~~~~~~~~v~~~~~~~~~~~~~f~l~~vvyeWA~G~sF~~I~~~Tdv~EG~IVR~i~R 1333 (1379)
.|.+.++|+..+..|++.|++|++|+.+|++++++++|+++ |++.||+|||+||+|.+|.+||++|||+||+||||+||
T Consensus 920 ~~~l~~el~~~l~~lqe~ArrIAkVs~ecKlEide~~Yv~s-Fkp~LMdvVy~W~~GatF~eIckmTdvfEGSiIR~~RR 998 (1041)
T KOG0948|consen 920 APKLKEELAGPLRQLQESARRIAKVSKECKLEIDEEDYVES-FKPELMDVVYAWAKGATFAEICKMTDVFEGSIIRTFRR 998 (1041)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHHHh-cChHHHHHHHHHHccccHHHHHHHhhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCHHHHHHHHHHHHhcCCCeeeeccccc
Q 039491 1334 LDETCREFRNAAAIMGNSALYKKMETASNAIKRDIVFAASLYI 1376 (1379)
Q Consensus 1334 LdEl~rqv~~Aa~~igd~~L~~Km~~a~~~IkRdIVf~~SLY~ 1376 (1379)
|+|+|||+.+||++|||.+|.+||++|+..|||||||||||||
T Consensus 999 LeElLrQl~~AAk~iGnteLe~Kf~~~~~~ikRDIVFAaSLYL 1041 (1041)
T KOG0948|consen 999 LEELLRQLIDAAKVIGNTELENKFEEAIKKIKRDIVFAASLYL 1041 (1041)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhceeehhhccC
Confidence 9999999999999999999999999999999999999999997
No 3
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.8e-143 Score=1344.92 Aligned_cols=924 Identities=41% Similarity=0.631 Sum_probs=770.2
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEE
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVY 448 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIy 448 (1379)
....|....+.+.... .+.+++.|||+||+||++|+.+|++|++||||||||||||+|++|||++++++|+|++|
T Consensus 93 ~~~~~~~~~~a~~~~~-----~~~~~~~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviY 167 (1041)
T COG4581 93 VPDDYDMVPDAESPFD-----LAPPAREYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIY 167 (1041)
T ss_pred CCchhcccchhhcccc-----cCcHHHhCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEe
Confidence 3445655444443222 56788899999999999999999999999999999999999999999999999999999
Q ss_pred ecchHHHHHHHHHHHhccc-cE----EEEecCcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccch
Q 039491 449 TAPIKTISNQKYRDFSGKF-DV----GLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERG 523 (1379)
Q Consensus 449 lsPtkaLsnQk~~~~~~~f-~V----glltGdv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG 523 (1379)
|+|+|||+||+|++|...| ++ |++|||+++|++++|+|||||+||+|||++...++++++|||||+|||+|.+||
T Consensus 168 TsPIKALsNQKyrdl~~~fgdv~~~vGL~TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG 247 (1041)
T COG4581 168 TSPIKALSNQKYRDLLAKFGDVADMVGLMTGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERG 247 (1041)
T ss_pred ccchhhhhhhHHHHHHHHhhhhhhhccceecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccc
Confidence 9999999999999999999 66 999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeecc-CcccchhhHHH
Q 039491 524 VVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCE-NEAFIPQGWKA 602 (1379)
Q Consensus 524 ~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d-~~~f~~~~~~~ 602 (1379)
++||++|+++|+++++|+||||+||+.+|+.|++.++.++++++++++|||||+||++...++|.++| +..|...++..
T Consensus 248 ~VWEE~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~ 327 (1041)
T COG4581 248 VVWEEVIILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPS 327 (1041)
T ss_pred hhHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 77788888887
Q ss_pred HHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCc-cccccccCCCCCCCcccccchhHHHHHHHHHHH
Q 039491 603 AKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKH-SVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLS 681 (1379)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~ 681 (1379)
+...+........ .++.|++... +++++. +++.. .......+++.+.
T Consensus 328 a~~~l~~~~~~~~-----------------------~~~~~~~~~~a~~~~~~-~~~~~--------~~~~~~~iv~~l~ 375 (1041)
T COG4581 328 ANRSLSCFSEKVR-----------------------ETDDGDVGRYARRTKAL-RGSAK--------GPAGRPEIVNKLD 375 (1041)
T ss_pred hhhhhhccchhcc-----------------------ccCcccccccccccccc-CCccc--------ccccchHHHhhhh
Confidence 7766653210000 0011111100 000000 00100 1112367899999
Q ss_pred hCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhH-HHHHHHHHhhhccCCCCCch-hHHHHHHhhccceEEecCCCC
Q 039491 682 KKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSE-IRVFCDKAFSRLKGSDRNLP-QIVRVQSLLRRGIAIHHAGLL 759 (1379)
Q Consensus 682 ~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~-i~~~~~~~~~~L~~edr~lp-qi~~l~~lL~rGIavhHggL~ 759 (1379)
..++.|+|+|+||++.|+.++..+..+++....+++. ++.++++++..|..+|+.+| |+..++.+|.||||+||+||+
T Consensus 376 ~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlL 455 (1041)
T COG4581 376 KDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLL 455 (1041)
T ss_pred hhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccc
Confidence 9999999999999999999999999999988888887 99999999999999999999 999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEec
Q 039491 760 PIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCR 839 (1379)
Q Consensus 760 ~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~ 839 (1379)
|+.|+.||++|+.|++||||||+||++|+|||+++|||.+.+||||.++|+++++||+||+|||||+|.|..|+||++..
T Consensus 456 P~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 456 PAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred hHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHhcCCCcccccccccHHHHHHHHhhcccc-HHHHHhhChhhHHhcCCcHHHHHHHHHHHcCCCCcccc
Q 039491 840 DEIPGESDLKHIIVGSATRLESQFRLTYIMILHLLRVEELK-VEDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTIEC 918 (1379)
Q Consensus 840 ~~~~~~~~l~~li~g~~~~L~S~f~lty~miLnLlr~e~~~-~e~~l~~SF~e~~~~~~~~~~~~~l~~~l~~~~~~i~c 918 (1379)
+...++..+..+..+.+++|.|+|+++|||++|+++++.+. +++|+++||++|+++..++...+.+ .++++++..|.|
T Consensus 536 ~~~~~~~e~~~l~~~~~~~L~s~f~~sy~milnll~v~~l~~~e~ll~~Sf~q~~~~~~l~~~~~~l-~~~~~~~~~i~~ 614 (1041)
T COG4581 536 PFESEPSEAAGLASGKLDPLRSQFRLSYNMILNLLRVEGLQTAEDLLERSFAQFQNSRSLPEIVEKL-ERLEKELNDIAT 614 (1041)
T ss_pred CCCCChHHHHHhhcCCCccchhheecchhHHHhhhhhcccCcHHHHHHhhHHHHhhhhhhHHHHHHH-HHHHHHHHhhhh
Confidence 76646899999999999999999999999999999999997 9999999999999999999999999 888888888876
Q ss_pred c---CCcchHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhcCCCceEEEecCCCCCcceEEEEecCCCCC------CceE
Q 039491 919 I---KGEPAIEEYYDMYYEAEKYNNQITEAFMQS--AHQFLMPGRVLFVKSQTGQDHLLGAVVKAPSANN------KEYI 987 (1379)
Q Consensus 919 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~Grlv~~~~~~~~~~~~gv~~~~~~~~~------~~~~ 987 (1379)
. .++.++..| ...++++++++.+..... +.+.++.||++.+.. ......||.++....... ..+.
T Consensus 615 ~~~~~d~~~~~~~---~~~~~k~~~~l~~~~~~~a~~~r~~~~gr~~~~~~-~~~~~~~g~~~~~~~r~~~~~t~~~~~~ 690 (1041)
T COG4581 615 ELFGTDENDAPKL---SLDYEKLRKKLNEEMRLQAAGLRALRKGRVVQIKD-GLAALFWGRLLKLTKRYTTKLTDHELYL 690 (1041)
T ss_pred hhccccccchHHH---HHHHHHHHHHHHHHHHHHHhHHHHhhhcceeeeec-chhhhhheeeeeeccccccccccchhee
Confidence 4 345556666 666777888888766655 779999999999987 434467888877543211 1122
Q ss_pred EEEEcCCCCCCcccccCCCCCCCCCCcccccCCCCCceeEeecccccccccceeeeecCCCCccCCccceeecccccccc
Q 039491 988 VMLLKPDLPSASETSLDKKSGDFSEGYFVIPKSKRGLEEEYCGSVSHRKGSGVINIKLPYHGAAAGVSYEVRGIDKKELL 1067 (1379)
Q Consensus 988 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 1067 (1379)
+.++.+.......... ...++....+........+.+.++.+..+..+....+.+|
T Consensus 691 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P--------------------- 746 (1041)
T COG4581 691 AVLVEPNADFSFPRPL---VKAMPHMNRESRWLVKILFRISFVYLLNATEILELILTMP--------------------- 746 (1041)
T ss_pred hheecccCCccchhHH---hhcccccccccccccccceeeeeeeeccccccchhhhcCC---------------------
Confidence 2222111100000000 0000000000000011112223333322222222222233
Q ss_pred ccccccccccccCccCchhHHHHHHHHHHHHHhccCCCCCCCCCChhhhcccCchhHHHHHHHHHHHHHHHHhCCCCCCC
Q 039491 1068 CICNCKIKIDQVGLLEDVSSAAFSKTVQQLLVLKSDEKKYPQALDPVKDLKLKDMNLVEAYYKWAGLLRKMAANKCHGCI 1147 (1379)
Q Consensus 1068 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~c~ 1147 (1379)
. .+.....+......+......+..++ .+.++++.++++.++++...+.+.....-.+..++-+.|+
T Consensus 747 ----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~le~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1041)
T COG4581 747 ----------R-RLLSRQGKLRRGEPSNEAIAAGLDGN--EKILENVVEMKIQVPELTVSLLKLRFGRYHLSENPLMNFD 813 (1041)
T ss_pred ----------H-hHhhcccchhccchhHHHHHhccccc--hhhhhhcccccccchhHHHHHHHHhhcccccCCCccccch
Confidence 1 11100111111222222222333332 3578889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcHHhhhchhHHHHHHHHHhHcCcccCCCccchhhHHhhhccCCchHHHHHHhhh
Q 039491 1148 KLEEHMKLTKENKRHKDEVNTLKFQMSDEALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFE 1227 (1379)
Q Consensus 1148 ~~~~h~~~~~~~~~l~~~i~~l~~~ls~~~l~l~~e~~~r~~VL~~LgyID~~~~v~lKGrvAceI~s~~EL~lTEll~~ 1227 (1379)
.+..|++.......|..++++++..+ +++.++++|..+.+||+.+||++.+.+|++|||+||||+|++||+|||||++
T Consensus 814 ~~~~~~~~~~~~~~L~~~i~~l~~~~--~~~~~l~~~~~l~~~l~~~g~~~~~~~v~~kGr~a~eI~s~~ellL~e~i~~ 891 (1041)
T COG4581 814 GAERLIENELLLSDLQAEIEDLSSSI--EALSFLDDYKTLQEVLKKLGFIEDNAVVLIKGRVAAEISSEDELLLTELIFS 891 (1041)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHhhcCCCcccccccccceeeeecCCCchHHHHHHHc
Confidence 99999999999999999999999999 8899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHhheeeeeccCC----CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhcCCCccHHHH
Q 039491 1228 NQLDDLEPEEAVAIMSAFVFQQRNT----SEPSLTPKLSVAKERLYNTAIRLGELQAHFKVQIDPEEYARDNLKFGLVEV 1303 (1379)
Q Consensus 1228 n~l~~l~p~eiaAlLS~fV~q~k~~----~~p~l~~~L~~~~~~i~~ia~~i~~~~~~~~v~~~~~~~~~~~~~f~l~~v 1303 (1379)
|.|++|+|+|+||+||||||+++++ +.+.++|.|+++...+.+++.+|.+++..|++++..+ +++ +.++||+|
T Consensus 892 g~f~~l~p~e~aallSa~v~e~~~~d~~~~~~~~~~~l~~~~~~l~e~~~kl~~~~~~~~i~~~~~--l~~-~~~~lm~v 968 (1041)
T COG4581 892 GEFNDLEPEELAALLSAFVFEEKTDDGTAEAPEITPALRDALLRLLELARKLNKDQNSSQIEIYPE--LND-FSVGLMEV 968 (1041)
T ss_pred CCccCCCHHHHHHHHHheeeccCCcccccccccCCHHHHhHHHHHHHHHHHHHHHHHhcCCcCCcc--ccc-ccccHHHH
Confidence 9999999999999999999999986 5678999999999999999999999999999999865 666 99999999
Q ss_pred HHHHhCCCCHHHHHhhcCCCCCceehhhhhHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhcCCCeeeeccccc
Q 039491 1304 VYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIMGNSALYKKMETASNAIKRDIVFAASLYI 1376 (1379)
Q Consensus 1304 vyeWA~G~sF~~I~~~Tdv~EG~IVR~i~RLdEl~rqv~~Aa~~igd~~L~~Km~~a~~~IkRdIVf~~SLY~ 1376 (1379)
||+||+|++|.+||.+|++.||++||+++|++|+|||+.+||.+|||++|..||..|+..|||||||++|||+
T Consensus 969 v~~wa~g~s~~~i~~~~~~~eGs~vR~~~r~~ell~ql~~aa~~ig~~~L~~k~~~~~~~irr~iv~~~sly~ 1041 (1041)
T COG4581 969 VYEWARGLSFADICGLTSLLEGSFVRIFRRLRELLRQLRKAASVIGNPELEEKAYRAIQEIRRDIVFVDSLYL 1041 (1041)
T ss_pred HHHHHhhcchhhhhcCCcccccchhhhhhHHHHHHHHhhhcccccCCHHHHHHHHHHHHhhhcCeEecccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996
No 4
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=6.3e-54 Score=550.89 Aligned_cols=433 Identities=26% Similarity=0.402 Sum_probs=340.1
Q ss_pred cccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHH-HHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEe
Q 039491 372 AWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYY-LENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 449 (1379)
Q Consensus 372 ~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~-L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyl 449 (1379)
.|+++++++.+.+.+.+ .+|+ |+|+|.+|++. +..|+|++++||||||||++|++||+..+.++.++||+
T Consensus 2 ~~~~l~lp~~~~~~l~~--------~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i 73 (737)
T PRK02362 2 KIAELPLPEGVIEFYEA--------EGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYI 73 (737)
T ss_pred ChhhcCCCHHHHHHHHh--------CCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEE
Confidence 57888888888888876 5676 99999999998 78899999999999999999999999999889999999
Q ss_pred cchHHHHHHHHHHHhcc---c-cEEEEecCcccCC----CCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCcc
Q 039491 450 APIKTISNQKYRDFSGK---F-DVGLLTGDVSLRP----EASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIE 521 (1379)
Q Consensus 450 sPtkaLsnQk~~~~~~~---f-~VglltGdv~in~----~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~ 521 (1379)
+|+++|++|++++|++. . +|+.++||..... .++|+|+|||++.+++.++...++++++||+||+|++.+.+
T Consensus 74 ~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~ 153 (737)
T PRK02362 74 VPLRALASEKFEEFERFEELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSAN 153 (737)
T ss_pred eChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCc
Confidence 99999999999999975 2 7999999987543 57999999999999998877788999999999999999999
Q ss_pred chhHHHHHHHHc---CccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchh
Q 039491 522 RGVVWEEVIIML---PRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQ 598 (1379)
Q Consensus 522 rG~v~eeii~~L---p~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~ 598 (1379)
||..+|.++..+ ++.+|+|+||||++|..++++|++.. .+.+..||+|+...++..+.++.. +...
T Consensus 154 rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~------~~~~~~rpv~l~~~v~~~~~~~~~-~~~~---- 222 (737)
T PRK02362 154 RGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAE------LVDSEWRPIDLREGVFYGGAIHFD-DSQR---- 222 (737)
T ss_pred chHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCC------cccCCCCCCCCeeeEecCCeeccc-cccc----
Confidence 999999987655 46799999999999999999999743 356788999998776543321110 0000
Q ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHH
Q 039491 599 GWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLIN 678 (1379)
Q Consensus 599 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~ 678 (1379)
.. . ..........+..
T Consensus 223 -----------------~~--------------------------------~---------------~~~~~~~~~~~~~ 238 (737)
T PRK02362 223 -----------------EV--------------------------------E---------------VPSKDDTLNLVLD 238 (737)
T ss_pred -----------------cC--------------------------------C---------------CccchHHHHHHHH
Confidence 00 0 0000112222333
Q ss_pred HHHhCCCCCEEEEeCChhHHHHHHHHhhcCCC--CCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecC
Q 039491 679 KLSKKSLLPVVIFCFSKNHCDKLADGMSGIDL--TSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHA 756 (1379)
Q Consensus 679 ~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l--~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHg 756 (1379)
.+. ...++||||+|++.|+.+|..|..... ....+...+..+.+. +.... .-.....+..++..||++|||
T Consensus 239 ~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~----l~~~~-~~~~~~~L~~~l~~gva~hHa 311 (737)
T PRK02362 239 TLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEE----IREVS-DTETSKDLADCVAKGAAFHHA 311 (737)
T ss_pred HHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHH----HHhcc-CccccHHHHHHHHhCEEeecC
Confidence 333 357999999999999999999975321 111222233322222 21111 111245788999999999999
Q ss_pred CCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCc-ccccCCHHHHHHHhcccCCCCCCCcEEEE
Q 039491 757 GLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGR-EFRQLLPGEYTQMAGRAGRRGLDKIGTVV 835 (1379)
Q Consensus 757 gL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~-~~rpls~~eyiQmaGRAGRrG~d~~G~vI 835 (1379)
||++.+|+.|+.+|++|.++|||||+++++|||+|+++|||+++.+||+. ++.|.+..+|.||+|||||.|.|..|.+|
T Consensus 312 gl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~i 391 (737)
T PRK02362 312 GLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAV 391 (737)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEE
Confidence 99999999999999999999999999999999999999999999999965 45689999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHhcCCCcccccccccHHHHHHHHh---hcc----ccHHHHHhhChhhHHh
Q 039491 836 VLCRDEIPGESDLKHIIVGSATRLESQFRLTYIMILHLLR---VEE----LKVEDMLKRSFAEFHS 894 (1379)
Q Consensus 836 il~~~~~~~~~~l~~li~g~~~~L~S~f~lty~miLnLlr---~e~----~~~e~~l~~SF~e~~~ 894 (1379)
+++.+.......+++++.+.+.+++|++...+.+.-+++. ... -++.++++++|+.++.
T Consensus 392 i~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~ 457 (737)
T PRK02362 392 LLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQT 457 (737)
T ss_pred EEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhc
Confidence 9997643123456788888999999999766666555552 121 2567889999987764
No 5
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=9.8e-51 Score=517.65 Aligned_cols=418 Identities=26% Similarity=0.365 Sum_probs=330.4
Q ss_pred cccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecc
Q 039491 372 AWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAP 451 (1379)
Q Consensus 372 ~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsP 451 (1379)
.|+++++.+.+.+.+.+ .+|+|+++|++|++.+.+|++++|+||||||||++|+++|...+..+.++||++|
T Consensus 2 ~~~~~~l~~~~~~~~~~--------~~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P 73 (674)
T PRK01172 2 KISDLGYDDEFLNLFTG--------NDFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVP 73 (674)
T ss_pred cHhhcCCCHHHHHHHhh--------CCCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEec
Confidence 46677778777777765 6889999999999999999999999999999999999999999888899999999
Q ss_pred hHHHHHHHHHHHhccc----cEEEEecCcccCC----CCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccch
Q 039491 452 IKTISNQKYRDFSGKF----DVGLLTGDVSLRP----EASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERG 523 (1379)
Q Consensus 452 tkaLsnQk~~~~~~~f----~VglltGdv~in~----~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG 523 (1379)
+++|++|++++|++.. .|+..+|+....+ .++|+|+|||++.+++.+....++++++||+||||++.+.+||
T Consensus 74 ~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg 153 (674)
T PRK01172 74 LRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRG 153 (674)
T ss_pred hHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCcc
Confidence 9999999999998643 7889999876433 5799999999999999887777899999999999999999999
Q ss_pred hHHHHHHHH---cCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhH
Q 039491 524 VVWEEVIIM---LPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGW 600 (1379)
Q Consensus 524 ~v~eeii~~---Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~ 600 (1379)
..++.++.. ++++.|+|+||||++|..++++|++.. .+....||+|++..++.....+. +..
T Consensus 154 ~~le~ll~~~~~~~~~~riI~lSATl~n~~~la~wl~~~------~~~~~~r~vpl~~~i~~~~~~~~--~~~------- 218 (674)
T PRK01172 154 PTLETVLSSARYVNPDARILALSATVSNANELAQWLNAS------LIKSNFRPVPLKLGILYRKRLIL--DGY------- 218 (674)
T ss_pred HHHHHHHHHHHhcCcCCcEEEEeCccCCHHHHHHHhCCC------ccCCCCCCCCeEEEEEecCeeee--ccc-------
Confidence 999988754 456799999999999999999999743 35677899999865543321110 000
Q ss_pred HHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHH
Q 039491 601 KAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKL 680 (1379)
Q Consensus 601 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L 680 (1379)
. + ....+..++...
T Consensus 219 -------------------------------------------------~----------------~-~~~~~~~~i~~~ 232 (674)
T PRK01172 219 -------------------------------------------------E----------------R-SQVDINSLIKET 232 (674)
T ss_pred -------------------------------------------------c----------------c-ccccHHHHHHHH
Confidence 0 0 000122333332
Q ss_pred HhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCCh
Q 039491 681 SKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLP 760 (1379)
Q Consensus 681 ~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~ 760 (1379)
.. .++++||||+|++.|+.+|..|.+....... + .+..++. -.....+..++.+||++|||||++
T Consensus 233 ~~-~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~-------~------~~~~~~~-~~~~~~L~~~l~~gv~~~hagl~~ 297 (674)
T PRK01172 233 VN-DGGQVLVFVSSRKNAEDYAEMLIQHFPEFND-------F------KVSSENN-NVYDDSLNEMLPHGVAFHHAGLSN 297 (674)
T ss_pred Hh-CCCcEEEEeccHHHHHHHHHHHHHhhhhccc-------c------ccccccc-ccccHHHHHHHhcCEEEecCCCCH
Confidence 22 3579999999999999999998653111000 0 0000000 011246788899999999999999
Q ss_pred HHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecC
Q 039491 761 IVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRD 840 (1379)
Q Consensus 761 ~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~ 840 (1379)
.+|+.|+..|++|.++|||||+++++|||+|+++|||.++.+|++...+++++.+|.||+|||||.|.|..|.+++++.+
T Consensus 298 ~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~ 377 (674)
T PRK01172 298 EQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAAS 377 (674)
T ss_pred HHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecC
Confidence 99999999999999999999999999999999999999988898888889999999999999999999999999999876
Q ss_pred CCCCHHHHHHHHhcCCCcccccccccHHHHHHHH---hhcc----ccHHHHHhhChhhHHh
Q 039491 841 EIPGESDLKHIIVGSATRLESQFRLTYIMILHLL---RVEE----LKVEDMLKRSFAEFHS 894 (1379)
Q Consensus 841 ~~~~~~~l~~li~g~~~~L~S~f~lty~miLnLl---r~e~----~~~e~~l~~SF~e~~~ 894 (1379)
.. +...+++++.+.+.|++|++.....+-.|++ .... -++.++++.+|.-.+.
T Consensus 378 ~~-~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~ 437 (674)
T PRK01172 378 PA-SYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQN 437 (674)
T ss_pred cc-cHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcC
Confidence 53 4577889999999999998865444444433 2221 2467777779886643
No 6
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.5e-51 Score=517.68 Aligned_cols=421 Identities=30% Similarity=0.410 Sum_probs=319.4
Q ss_pred CCC-CCCHHHHHHHHHH-HCCCcEEEEcCCCccHHHHHHHHHHHHHhc-CCcEEEecchHHHHHHHHHHHh--ccc--cE
Q 039491 397 FPF-ELDNFQKEAIYYL-ENGDSVFVAAHTSAGKTVVAEYAFALATKH-CTRAVYTAPIKTISNQKYRDFS--GKF--DV 469 (1379)
Q Consensus 397 ~pF-eL~~~Q~eAI~~L-~~g~sVlV~ApTGSGKTlvae~aI~~~l~~-~~raIylsPtkaLsnQk~~~~~--~~f--~V 469 (1379)
.++ ++.+.|+.|++.. .+++|++||||||||||++|+++|...+.+ +.++||++|+|||++|++++|+ +.| +|
T Consensus 27 ~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV 106 (766)
T COG1204 27 DGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRV 106 (766)
T ss_pred CChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEE
Confidence 344 5888899999885 557999999999999999999999999976 5999999999999999999999 334 99
Q ss_pred EEEecCcccCC----CCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCcc---ceEEEe
Q 039491 470 GLLTGDVSLRP----EASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRH---INIVLL 542 (1379)
Q Consensus 470 glltGdv~in~----~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~---vqiIlL 542 (1379)
++.|||.+..+ +.+|+|+|||.+.+.+.+...++.+|++||+||+|.+.|..||.+.|.++..++.. +||++|
T Consensus 107 ~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgL 186 (766)
T COG1204 107 GISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGL 186 (766)
T ss_pred EEecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEE
Confidence 99999999665 58999999999999999988899999999999999999999999999999876543 899999
Q ss_pred cccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCC
Q 039491 543 SATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSY 622 (1379)
Q Consensus 543 SATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~ 622 (1379)
|||+||..++|+|++... +.+.+||+|+...+.....++......+
T Consensus 187 SATlpN~~evA~wL~a~~------~~~~~rp~~l~~~v~~~~~~~~~~~~~k---------------------------- 232 (766)
T COG1204 187 SATLPNAEEVADWLNAKL------VESDWRPVPLRRGVPYVGAFLGADGKKK---------------------------- 232 (766)
T ss_pred eeecCCHHHHHHHhCCcc------cccCCCCcccccCCccceEEEEecCccc----------------------------
Confidence 999999999999998542 2567788877654433322221100000
Q ss_pred CCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHH
Q 039491 623 AGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLA 702 (1379)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA 702 (1379)
.+ .......+..++....+. +++++|||+||+.+...|
T Consensus 233 -------------~~----------------------------~~~~~~~~~~~v~~~~~~-~~qvLvFv~sR~~a~~~A 270 (766)
T COG1204 233 -------------TW----------------------------PLLIDNLALELVLESLAE-GGQVLVFVHSRKEAEKTA 270 (766)
T ss_pred -------------cc----------------------------cccchHHHHHHHHHHHhc-CCeEEEEEecCchHHHHH
Confidence 00 001233344444433333 479999999999999999
Q ss_pred HHhhcC--CCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEe
Q 039491 703 DGMSGI--DLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFS 780 (1379)
Q Consensus 703 ~~L~~~--~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVA 780 (1379)
..|... +..+..+.......-. .....+........+.+++.+|+|+||+||+..+|..||..|++|.++||+|
T Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~ 346 (766)
T COG1204 271 KKLRIKMSATLSDDEKIVLDEGAS----PILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVS 346 (766)
T ss_pred HHHHHHHhhcCChhhhhhcccccc----ccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEe
Confidence 999841 1112111111110000 0110111112236789999999999999999999999999999999999999
Q ss_pred cccccccCCCCCceEEEccccccC-CcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHHhcCCCcc
Q 039491 781 TETFAMGVNAPARTVVFDNLRKFD-GREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRL 859 (1379)
Q Consensus 781 Tetla~GINiPa~tvVI~~~~kfD-g~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li~g~~~~L 859 (1379)
|+|+|.|||+|+++|||.++..|| ..++++++..+|+||+|||||.|.|..|.+++++++...........+.+.++++
T Consensus 347 TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~ 426 (766)
T COG1204 347 TPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPI 426 (766)
T ss_pred chHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchH
Confidence 999999999999999999999999 4558899999999999999999999999999999665434566677888889887
Q ss_pred cccccccHHHHHHHH---hhcc----ccHHHHHhhChhhHHhcCC
Q 039491 860 ESQFRLTYIMILHLL---RVEE----LKVEDMLKRSFAEFHSQKK 897 (1379)
Q Consensus 860 ~S~f~lty~miLnLl---r~e~----~~~e~~l~~SF~e~~~~~~ 897 (1379)
.|++-..-+.=-.++ .++. +...+++.+.|+..+.+..
T Consensus 427 ~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~ 471 (766)
T COG1204 427 ESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGE 471 (766)
T ss_pred HHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccc
Confidence 776544332211122 2222 3467778888877765433
No 7
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=6.6e-50 Score=512.58 Aligned_cols=426 Identities=27% Similarity=0.416 Sum_probs=330.1
Q ss_pred cccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHH-HHCCCcEEEEcCCCccHHHHHHHHHHHHH-hcCCcEEE
Q 039491 372 AWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYY-LENGDSVFVAAHTSAGKTVVAEYAFALAT-KHCTRAVY 448 (1379)
Q Consensus 372 ~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~-L~~g~sVlV~ApTGSGKTlvae~aI~~~l-~~~~raIy 448 (1379)
.|.++...+.+.+.+.+ .+|+ |+|+|.+|++. +..|+|++++||||||||++|+++|+..+ .++.++||
T Consensus 2 ~~~~l~l~~~~~~~l~~--------~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~ 73 (720)
T PRK00254 2 KVDELRVDERIKRVLKE--------RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVY 73 (720)
T ss_pred cHHHcCCCHHHHHHHHh--------CCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEE
Confidence 46677777787777776 6776 99999999986 78999999999999999999999998876 46789999
Q ss_pred ecchHHHHHHHHHHHhcc--c--cEEEEecCcccC----CCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCc
Q 039491 449 TAPIKTISNQKYRDFSGK--F--DVGLLTGDVSLR----PEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDI 520 (1379)
Q Consensus 449 lsPtkaLsnQk~~~~~~~--f--~VglltGdv~in----~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~ 520 (1379)
++|++||++|++++|+.. + +|+.++|+.... .+.+|+|+|||++.+++.++...++++++||+||+|.+.+.
T Consensus 74 l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~ 153 (720)
T PRK00254 74 LVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSY 153 (720)
T ss_pred EeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCc
Confidence 999999999999998863 2 889999998643 34789999999999999877778999999999999999999
Q ss_pred cchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhH
Q 039491 521 ERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGW 600 (1379)
Q Consensus 521 ~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~ 600 (1379)
+||..++.++..++..+|+|+||||++|..++++|++.. .+....||+|+...++..+..+ ......
T Consensus 154 ~rg~~le~il~~l~~~~qiI~lSATl~n~~~la~wl~~~------~~~~~~rpv~l~~~~~~~~~~~--~~~~~~----- 220 (720)
T PRK00254 154 DRGATLEMILTHMLGRAQILGLSATVGNAEELAEWLNAE------LVVSDWRPVKLRKGVFYQGFLF--WEDGKI----- 220 (720)
T ss_pred cchHHHHHHHHhcCcCCcEEEEEccCCCHHHHHHHhCCc------cccCCCCCCcceeeEecCCeee--ccCcch-----
Confidence 999999999999988999999999999999999999742 3556789999976554332111 000000
Q ss_pred HHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHH
Q 039491 601 KAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKL 680 (1379)
Q Consensus 601 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L 680 (1379)
. . ....+..++..+
T Consensus 221 -------------------------------------------------~-------------~----~~~~~~~~~~~~ 234 (720)
T PRK00254 221 -------------------------------------------------E-------------R----FPNSWESLVYDA 234 (720)
T ss_pred -------------------------------------------------h-------------c----chHHHHHHHHHH
Confidence 0 0 001112222222
Q ss_pred HhCCCCCEEEEeCChhHHHHHHHHhhcC--CCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCC
Q 039491 681 SKKSLLPVVIFCFSKNHCDKLADGMSGI--DLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGL 758 (1379)
Q Consensus 681 ~~~~~~pvIVFv~Srk~ce~lA~~L~~~--~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL 758 (1379)
.. ...++||||+|++.|+.+|..|... .+....+...+....+ .+.. .+....+..++..||++|||||
T Consensus 235 i~-~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~L~~~l~~gv~~hHagl 305 (720)
T PRK00254 235 VK-KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELAD----SLEE----NPTNEKLKKALRGGVAFHHAGL 305 (720)
T ss_pred HH-hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH----HHhc----CCCcHHHHHHHhhCEEEeCCCC
Confidence 22 2479999999999999999888542 1111122222222222 2211 1223568888999999999999
Q ss_pred ChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEe
Q 039491 759 LPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLC 838 (1379)
Q Consensus 759 ~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~ 838 (1379)
++.+|+.|+.+|++|.++|||||+++++|||+|+++|||.++.+|+..++.+++..+|.||+|||||.|.|..|.+|+++
T Consensus 306 ~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~ 385 (720)
T PRK00254 306 GRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVA 385 (720)
T ss_pred CHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEe
Confidence 99999999999999999999999999999999999999999988876666677889999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhcCCCcccccccccH---HHHHHHHhhccc----cHHHHHhhChhhHHh
Q 039491 839 RDEIPGESDLKHIIVGSATRLESQFRLTY---IMILHLLRVEEL----KVEDMLKRSFAEFHS 894 (1379)
Q Consensus 839 ~~~~~~~~~l~~li~g~~~~L~S~f~lty---~miLnLlr~e~~----~~e~~l~~SF~e~~~ 894 (1379)
.++. ....+++++.+.++++.|.+.... ..++..+....+ +.-++++++|.-++.
T Consensus 386 ~~~~-~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~ 447 (720)
T PRK00254 386 TTEE-PSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQR 447 (720)
T ss_pred cCcc-hHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhh
Confidence 8653 245688899999999988876543 344444433222 356789999986543
No 8
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.5e-48 Score=472.49 Aligned_cols=397 Identities=27% Similarity=0.399 Sum_probs=322.5
Q ss_pred CCCC-CCHHHHHHHHHH-HCCCcEEEEcCCCccHHHHHHHHHHHHHh----------cCCcEEEecchHHHHHHHHHHHh
Q 039491 397 FPFE-LDNFQKEAIYYL-ENGDSVFVAAHTSAGKTVVAEYAFALATK----------HCTRAVYTAPIKTISNQKYRDFS 464 (1379)
Q Consensus 397 ~pFe-L~~~Q~eAI~~L-~~g~sVlV~ApTGSGKTlvae~aI~~~l~----------~~~raIylsPtkaLsnQk~~~~~ 464 (1379)
|+|+ |+.+|.++++.+ ..+.|.+||||||||||.+|+++|+..++ ++.|+||++|+||||.++++.|.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 7788 999999999987 67889999999999999999999999996 57899999999999999999999
Q ss_pred ccc-----cEEEEecCcccCC----CCceeeecHHHHHHHHhcC---cccCCCccEEEEeccCCCCCccchhHHHHHHHH
Q 039491 465 GKF-----DVGLLTGDVSLRP----EASCLIMTTEILRSMLYRG---ADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIM 532 (1379)
Q Consensus 465 ~~f-----~VglltGdv~in~----~a~IlV~TpEiL~smL~~~---~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~ 532 (1379)
+.| .|+.+|||++... +++|+|+|||.+.-.-++. ..++..|++||+||+|.+.| +||+++|.++..
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlEtiVaR 264 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLETIVAR 264 (1230)
T ss_pred hhcccccceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccchHHHHHHH
Confidence 988 7889999999754 4899999999995444332 34678999999999999988 799999998754
Q ss_pred c-------CccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHH
Q 039491 533 L-------PRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKD 605 (1379)
Q Consensus 533 L-------p~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~ 605 (1379)
. ...++||+||||+||..++|.|++......+..+...+|||||+..++-.. .. +..+
T Consensus 265 tlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k----~~-~~~~---------- 329 (1230)
T KOG0952|consen 265 TLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIK----GK-KNRQ---------- 329 (1230)
T ss_pred HHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeee----cc-cchh----------
Confidence 3 357999999999999999999999887778889999999999987665321 00 0000
Q ss_pred HHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCC
Q 039491 606 AYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSL 685 (1379)
Q Consensus 606 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~ 685 (1379)
....-+......+++.+.. +
T Consensus 330 ----------------------------------------------------------~~~~~d~~~~~kv~e~~~~--g 349 (1230)
T KOG0952|consen 330 ----------------------------------------------------------QKKNIDEVCYDKVVEFLQE--G 349 (1230)
T ss_pred ----------------------------------------------------------hhhhHHHHHHHHHHHHHHc--C
Confidence 0000123344555666544 5
Q ss_pred CCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCch--hHHHHHHhhccceEEecCCCChHHH
Q 039491 686 LPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLP--QIVRVQSLLRRGIAIHHAGLLPIVK 763 (1379)
Q Consensus 686 ~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lp--qi~~l~~lL~rGIavhHggL~~~~R 763 (1379)
.+++|||.+|+.+.+.|+.|.+...... ..++-+| ....+.++..+|+|+||+||+-.+|
T Consensus 350 ~qVlvFvhsR~~Ti~tA~~l~~~a~~~g------------------~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR 411 (1230)
T KOG0952|consen 350 HQVLVFVHSRNETIRTAKKLRERAETNG------------------EKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDR 411 (1230)
T ss_pred CeEEEEEecChHHHHHHHHHHHHHHhcC------------------cccccCCChhhHHHHHHHHhhhhhcccccchhhH
Confidence 8999999999999999999876322211 1122222 2367899999999999999999999
Q ss_pred HHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcc--cccCCHHHHHHHhcccCCCCCCCcEEEEEEecCC
Q 039491 764 EVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGRE--FRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 764 e~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~--~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~ 841 (1379)
..+|..|+.|.++||+||.|+|.|+|+|+-.|||-+++-||... |..+...+.+|+.|||||.+.|+.|.+|++++.+
T Consensus 412 ~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~d 491 (1230)
T KOG0952|consen 412 QLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRD 491 (1230)
T ss_pred HHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEeccc
Confidence 99999999999999999999999999999999999999999875 8889999999999999999999999999999876
Q ss_pred CCCHHHHHHHHhcCCCcccccccccHHHHHHHH----hhccc-cHHHHHhhChh
Q 039491 842 IPGESDLKHIIVGSATRLESQFRLTYIMILHLL----RVEEL-KVEDMLKRSFA 890 (1379)
Q Consensus 842 ~~~~~~l~~li~g~~~~L~S~f~lty~miLnLl----r~e~~-~~e~~l~~SF~ 890 (1379)
. ...+..++.| ..+++|+|....--.||.. .+..+ .+-++|+.+|.
T Consensus 492 k--l~~Y~sLl~~-~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTyl 542 (1230)
T KOG0952|consen 492 K--LDHYESLLTG-QNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYL 542 (1230)
T ss_pred H--HHHHHHHHcC-CChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeE
Confidence 3 5677778775 5789999987665555553 23333 34567777774
No 9
>PF08148 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 This C-terminal domain is found in DOB1/SK12/helY-like DEAD box helicases [].; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; PDB: 4A4Z_A 2XGJ_B 3L9O_A.
Probab=100.00 E-value=2.8e-48 Score=415.76 Aligned_cols=177 Identities=47% Similarity=0.735 Sum_probs=147.8
Q ss_pred ccCCCccchhhHHhhhccCCchHHHHHHhhhcCCCCCCHHHHHHHhheeeeeccCCCC---CCCChHHHHHHHHHHHHHH
Q 039491 1197 IDADLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEAVAIMSAFVFQQRNTSE---PSLTPKLSVAKERLYNTAI 1273 (1379)
Q Consensus 1197 ID~~~~v~lKGrvAceI~s~~EL~lTEll~~n~l~~l~p~eiaAlLS~fV~q~k~~~~---p~l~~~L~~~~~~i~~ia~ 1273 (1379)
||++++||+||||||+|++++||++|||||+|+|++|+|+||||+|||||||+|.++. ...++.|.++++++.++++
T Consensus 1 id~~~~vt~kGr~a~~I~~~~eLl~te~l~~g~f~~L~p~elAa~lS~~v~e~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 80 (180)
T PF08148_consen 1 IDEDNVVTLKGRVACEIYSEDELLLTELLFSGVFDDLDPAELAALLSCFVYEPRREDEEERYPPSPRLREALEQLQEIAE 80 (180)
T ss_dssp B-TTS-BSHHHHHHCC--SSTHHHHHHHHHCTCCCCS-HHHHHHHHHHHC-----SS---------HHHHHHHHHHHHHH
T ss_pred CCCCCccCHHHHHHHHHcCcccHHHHHHHHcCCCCCCCHHHHHHHHHHhhcccccCcccccccccHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999997654 1223389999999999999
Q ss_pred HHHHHHHHcCCCCChhhhhhcCCCccHHHHHHHHhCCCCHHHHHhhcCCCCCceehhhhhHHHHHHHHHHhhhhcCCHHH
Q 039491 1274 RLGELQAHFKVQIDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIMGNSAL 1353 (1379)
Q Consensus 1274 ~i~~~~~~~~v~~~~~~~~~~~~~f~l~~vvyeWA~G~sF~~I~~~Tdv~EG~IVR~i~RLdEl~rqv~~Aa~~igd~~L 1353 (1379)
+|..+|.+||+ +.++|+.+ ++||||++||+||+|+||++||+.|+++||||||+|+|++|+||||++||+++||++|
T Consensus 81 ~l~~~~~~~~l--~~~~~~~~-~~~~l~~~v~~Wa~G~~~~~i~~~t~l~EGdiVR~~rRl~dlLrql~~aa~~~g~~~L 157 (180)
T PF08148_consen 81 RLAKVEREHGL--DEEEYVER-FDPGLMEVVYAWASGASFAEILEMTDLFEGDIVRWIRRLIDLLRQLANAAKIIGDPEL 157 (180)
T ss_dssp HHHHHHHHTT---HHHHHHHC-STTTTHHHHHHHHCT--HHHHCCT-SS-HHHHHHHHHHHHHHHHHHHHHHHCCT-HHH
T ss_pred HHHHHHHHhCC--CCcccccC-CCccHHHHHHHHHCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 99999999999 66789998 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeeeeccccc
Q 039491 1354 YKKMETASNAIKRDIVFAASLYI 1376 (1379)
Q Consensus 1354 ~~Km~~a~~~IkRdIVf~~SLY~ 1376 (1379)
.+|+++|+++|||||||++||||
T Consensus 158 ~~~~~~a~~~i~R~iV~~~SLYl 180 (180)
T PF08148_consen 158 AEKAREAIDLIRRDIVFASSLYL 180 (180)
T ss_dssp HHHHHHHHHHHSHCCCC---TT-
T ss_pred HHHHHHHHHhccCCccccccccC
Confidence 99999999999999999999997
No 10
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-45 Score=410.74 Aligned_cols=339 Identities=19% Similarity=0.256 Sum_probs=285.1
Q ss_pred ccccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh---c
Q 039491 367 QQQKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK---H 442 (1379)
Q Consensus 367 ~~~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~---~ 442 (1379)
.....+|++++..+.+++++.+ .+|. |+++|++|||.++.|++|+..|.||||||.+|.+||++.+- .
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~--------l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~ 128 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQE--------LGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK 128 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHH--------hCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC
Confidence 3456799999999999999998 4566 99999999999999999999999999999999999999983 3
Q ss_pred CCcEEEecchHHHHHHHHHHHhccc-----cEEEEecCccc-------CCCCceeeecHHHHHHHHhc-CcccCCCccEE
Q 039491 443 CTRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSL-------RPEASCLIMTTEILRSMLYR-GADIIRDIEWV 509 (1379)
Q Consensus 443 ~~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~i-------n~~a~IlV~TpEiL~smL~~-~~~~l~~v~lV 509 (1379)
..++++++|||+||.|+...|.... .+..+.|+... ..+.+|+|+||++|..++.+ +...++.++++
T Consensus 129 ~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~L 208 (476)
T KOG0330|consen 129 LFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFL 208 (476)
T ss_pred CceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHH
Confidence 4789999999999999999999875 67788898763 45689999999999999984 56778999999
Q ss_pred EEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccC-CCCcC-c-eEEEeecCce
Q 039491 510 IFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTT-KRPVP-L-EHCLYYSGEF 586 (1379)
Q Consensus 510 I~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~-~Rpvp-L-e~~l~~~~~l 586 (1379)
|+||||++.|.+|+..++.++..+|...|++++|||++.... +........++.+..+. ++.|+ + ++|++...
T Consensus 209 VlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~--kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~-- 284 (476)
T KOG0330|consen 209 VLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVR--KLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPG-- 284 (476)
T ss_pred hhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhH--HHHhhccCCCeEEeccchhcchHHhhhheEeccc--
Confidence 999999999999999999999999999999999999987653 33344445566655443 33333 2 33332211
Q ss_pred eeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccc
Q 039491 587 YKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLR 666 (1379)
Q Consensus 587 ~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~ 666 (1379)
T Consensus 285 -------------------------------------------------------------------------------- 284 (476)
T KOG0330|consen 285 -------------------------------------------------------------------------------- 284 (476)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHh
Q 039491 667 RSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSL 746 (1379)
Q Consensus 667 ~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~l 746 (1379)
+.+-..|+..+....+.++||||++...+..++-.|+.+++++..
T Consensus 285 ---k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~-------------------------------- 329 (476)
T KOG0330|consen 285 ---KDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIP-------------------------------- 329 (476)
T ss_pred ---cccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceec--------------------------------
Confidence 011124555555666689999999999999999999999988754
Q ss_pred hccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCC
Q 039491 747 LRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRR 826 (1379)
Q Consensus 747 L~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRr 826 (1379)
+||.|++..|.-.++.|++|...||+||+++++|+|+|.+++||+ ||. |.+..+|+||+||+||.
T Consensus 330 -------LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN----yDi----P~~skDYIHRvGRtaRa 394 (476)
T KOG0330|consen 330 -------LHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN----YDI----PTHSKDYIHRVGRTARA 394 (476)
T ss_pred -------ccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe----cCC----CCcHHHHHHHccccccc
Confidence 899999999999999999999999999999999999999999999 999 99999999999999999
Q ss_pred CCCCcEEEEEEecCCCCCHHHHHHH
Q 039491 827 GLDKIGTVVVLCRDEIPGESDLKHI 851 (1379)
Q Consensus 827 G~d~~G~vIil~~~~~~~~~~l~~l 851 (1379)
|.. |.+|.+++.- +.+.+.++
T Consensus 395 Grs--G~~ItlVtqy--Dve~~qrI 415 (476)
T KOG0330|consen 395 GRS--GKAITLVTQY--DVELVQRI 415 (476)
T ss_pred CCC--cceEEEEehh--hhHHHHHH
Confidence 965 9999998762 55555554
No 11
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.3e-44 Score=440.53 Aligned_cols=328 Identities=20% Similarity=0.273 Sum_probs=272.3
Q ss_pred ccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc---CCcE
Q 039491 371 EAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH---CTRA 446 (1379)
Q Consensus 371 ~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~---~~ra 446 (1379)
.+|+.+++.+.+..++.. ++|+ |+|+|++|++.+.+|++++++||||||||++|.++++..+.. ..++
T Consensus 4 ~~f~~l~l~~~l~~~l~~--------~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~ 75 (460)
T PRK11776 4 TAFSTLPLPPALLANLNE--------LGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQA 75 (460)
T ss_pred CChhhcCCCHHHHHHHHH--------CCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceE
Confidence 479999999999999987 7888 999999999999999999999999999999999999998854 3479
Q ss_pred EEecchHHHHHHHHHHHhccc------cEEEEecCccc-------CCCCceeeecHHHHHHHHhcCcccCCCccEEEEec
Q 039491 447 VYTAPIKTISNQKYRDFSGKF------DVGLLTGDVSL-------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDE 513 (1379)
Q Consensus 447 IylsPtkaLsnQk~~~~~~~f------~VglltGdv~i-------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DE 513 (1379)
+|++||++|+.|+++.++... ++..++|+.+. ...++|+|+||++|..++.++...+.++++|||||
T Consensus 76 lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDE 155 (460)
T PRK11776 76 LVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDE 155 (460)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEEC
Confidence 999999999999998887642 67888998764 34579999999999999998888899999999999
Q ss_pred cCCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCC-CCcCceEEEeecCceeeeccC
Q 039491 514 VHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTK-RPVPLEHCLYYSGEFYKVCEN 592 (1379)
Q Consensus 514 aH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~-RpvpLe~~l~~~~~l~~i~d~ 592 (1379)
||++.+.++...++.++..+|...|++++|||+++.. ..+.......+..+..... ....++++++...
T Consensus 156 ad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~--~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-------- 225 (460)
T PRK11776 156 ADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGI--AAISQRFQRDPVEVKVESTHDLPAIEQRFYEVS-------- 225 (460)
T ss_pred HHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHH--HHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeC--------
Confidence 9999999999999999999999999999999998653 2333333344444433222 2222444433211
Q ss_pred cccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHH
Q 039491 593 EAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSI 672 (1379)
Q Consensus 593 ~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1379)
....
T Consensus 226 ----------------------------------------------------------------------------~~~k 229 (460)
T PRK11776 226 ----------------------------------------------------------------------------PDER 229 (460)
T ss_pred ----------------------------------------------------------------------------cHHH
Confidence 0112
Q ss_pred HHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceE
Q 039491 673 WLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIA 752 (1379)
Q Consensus 673 ~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIa 752 (1379)
+..+...+......++||||++++.|+.++..|...++. +.
T Consensus 230 ~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~---------------------------------------v~ 270 (460)
T PRK11776 230 LPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFS---------------------------------------AL 270 (460)
T ss_pred HHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCc---------------------------------------EE
Confidence 334455555555678999999999999999999765432 66
Q ss_pred EecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcE
Q 039491 753 IHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIG 832 (1379)
Q Consensus 753 vhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G 832 (1379)
.+||+|++.+|+.++..|++|.++|||||+++++|||+|++++||+ ||. |.++..|+||+|||||.|.. |
T Consensus 271 ~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~----~d~----p~~~~~yiqR~GRtGR~g~~--G 340 (460)
T PRK11776 271 ALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVIN----YEL----ARDPEVHVHRIGRTGRAGSK--G 340 (460)
T ss_pred EEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEE----ecC----CCCHhHhhhhcccccCCCCc--c
Confidence 7999999999999999999999999999999999999999999999 999 89999999999999999976 9
Q ss_pred EEEEEecCC
Q 039491 833 TVVVLCRDE 841 (1379)
Q Consensus 833 ~vIil~~~~ 841 (1379)
.+|.++.++
T Consensus 341 ~ai~l~~~~ 349 (460)
T PRK11776 341 LALSLVAPE 349 (460)
T ss_pred eEEEEEchh
Confidence 999988654
No 12
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.7e-44 Score=435.37 Aligned_cols=330 Identities=20% Similarity=0.200 Sum_probs=265.2
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh------
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK------ 441 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~------ 441 (1379)
...+|+++++.+.+++++.+ ++|+ |+++|++||+.+.+|+|++++||||||||++|+++++..+.
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~--------~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~ 77 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEK--------KGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPE 77 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHH--------CCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhccccc
Confidence 45789999999999999987 7888 99999999999999999999999999999999999987662
Q ss_pred ----cCCcEEEecchHHHHHHHHHHHhccc-----cEEEEecCccc-------CCCCceeeecHHHHHHHHhcCcccCCC
Q 039491 442 ----HCTRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSL-------RPEASCLIMTTEILRSMLYRGADIIRD 505 (1379)
Q Consensus 442 ----~~~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~i-------n~~a~IlV~TpEiL~smL~~~~~~l~~ 505 (1379)
.+.++||++||++|+.|+++.+.... +++.++|+... ....+|+|+||++|..++.++...+.+
T Consensus 78 ~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~ 157 (423)
T PRK04837 78 DRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGA 157 (423)
T ss_pred ccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 24689999999999999988877653 78888887652 345799999999999999888888999
Q ss_pred ccEEEEeccCCCCCccchhHHHHHHHHcCc--cceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCC--CcCceEEEe
Q 039491 506 IEWVIFDEVHYVNDIERGVVWEEVIIMLPR--HINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKR--PVPLEHCLY 581 (1379)
Q Consensus 506 v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~--~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~R--pvpLe~~l~ 581 (1379)
+++|||||||++.+.++...++.++..+|. ..+.+++|||++.... .........+..+...... ...+.+.++
T Consensus 158 v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~--~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~ 235 (423)
T PRK04837 158 IQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVR--ELAFEHMNNPEYVEVEPEQKTGHRIKEELF 235 (423)
T ss_pred ccEEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHH--HHHHHHCCCCEEEEEcCCCcCCCceeEEEE
Confidence 999999999999999888888888888874 5678999999986542 2222222334333322111 111111111
Q ss_pred ecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCC
Q 039491 582 YSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQN 661 (1379)
Q Consensus 582 ~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~ 661 (1379)
...
T Consensus 236 ~~~----------------------------------------------------------------------------- 238 (423)
T PRK04837 236 YPS----------------------------------------------------------------------------- 238 (423)
T ss_pred eCC-----------------------------------------------------------------------------
Confidence 000
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHH
Q 039491 662 NWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIV 741 (1379)
Q Consensus 662 ~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~ 741 (1379)
...+...+...+......++||||+++..|+.++..|...++.
T Consensus 239 -------~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~------------------------------ 281 (423)
T PRK04837 239 -------NEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHR------------------------------ 281 (423)
T ss_pred -------HHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCc------------------------------
Confidence 1122333444455555678999999999999999999765432
Q ss_pred HHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhc
Q 039491 742 RVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAG 821 (1379)
Q Consensus 742 ~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaG 821 (1379)
++++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||. |.++.+|+||+|
T Consensus 282 ---------v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~----~d~----P~s~~~yiqR~G 344 (423)
T PRK04837 282 ---------VGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFN----YDL----PDDCEDYVHRIG 344 (423)
T ss_pred ---------EEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEE----eCC----CCchhheEeccc
Confidence 678999999999999999999999999999999999999999999999 999 999999999999
Q ss_pred ccCCCCCCCcEEEEEEecCC
Q 039491 822 RAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 822 RAGRrG~d~~G~vIil~~~~ 841 (1379)
||||.|.. |.+|.++.++
T Consensus 345 R~gR~G~~--G~ai~~~~~~ 362 (423)
T PRK04837 345 RTGRAGAS--GHSISLACEE 362 (423)
T ss_pred cccCCCCC--eeEEEEeCHH
Confidence 99999976 9999998654
No 13
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=6.8e-44 Score=435.47 Aligned_cols=326 Identities=18% Similarity=0.220 Sum_probs=264.3
Q ss_pred cccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc--------
Q 039491 372 AWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH-------- 442 (1379)
Q Consensus 372 ~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~-------- 442 (1379)
+|+.+++.+.+.+.+.+ ++|+ |+++|++||+.+.+|+|++++||||+|||++|+++++..+..
T Consensus 2 ~f~~l~l~~~l~~~l~~--------~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~ 73 (456)
T PRK10590 2 SFDSLGLSPDILRAVAE--------QGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGR 73 (456)
T ss_pred CHHHcCCCHHHHHHHHH--------CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccC
Confidence 68999999999999887 7787 999999999999999999999999999999999999888732
Q ss_pred -CCcEEEecchHHHHHHHHHHHhccc-----cEEEEecCcccC-------CCCceeeecHHHHHHHHhcCcccCCCccEE
Q 039491 443 -CTRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSLR-------PEASCLIMTTEILRSMLYRGADIIRDIEWV 509 (1379)
Q Consensus 443 -~~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~in-------~~a~IlV~TpEiL~smL~~~~~~l~~v~lV 509 (1379)
..++||++||++|+.|+++.++..+ .+..++|+.+.+ ...+|+|+||++|.+++......++++++|
T Consensus 74 ~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~l 153 (456)
T PRK10590 74 RPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153 (456)
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEE
Confidence 2479999999999999999988764 566788887653 357999999999999998888889999999
Q ss_pred EEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCCh-HHHHHHHhhhcCCcEEEEccC--CCCcCceEEEeecCce
Q 039491 510 IFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNT-VEFADWIGRTKQKKIRVTGTT--KRPVPLEHCLYYSGEF 586 (1379)
Q Consensus 510 I~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~-~efa~wl~~~~~~~i~vi~t~--~RpvpLe~~l~~~~~l 586 (1379)
||||||++.+.++...+..++..++...|++++|||+++. .+++.++. ..+..+.... .....+.+++...
T Consensus 154 ViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~---~~~~~i~~~~~~~~~~~i~~~~~~~--- 227 (456)
T PRK10590 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLL---HNPLEIEVARRNTASEQVTQHVHFV--- 227 (456)
T ss_pred EeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHc---CCCeEEEEecccccccceeEEEEEc---
Confidence 9999999999988888999999999999999999999875 35555543 3333332211 1111122222110
Q ss_pred eeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccc
Q 039491 587 YKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLR 666 (1379)
Q Consensus 587 ~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~ 666 (1379)
+
T Consensus 228 ----~--------------------------------------------------------------------------- 228 (456)
T PRK10590 228 ----D--------------------------------------------------------------------------- 228 (456)
T ss_pred ----C---------------------------------------------------------------------------
Confidence 0
Q ss_pred cchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHh
Q 039491 667 RSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSL 746 (1379)
Q Consensus 667 ~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~l 746 (1379)
.......+...+......++||||+++..|+.++..|...++.
T Consensus 229 --~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~----------------------------------- 271 (456)
T PRK10590 229 --KKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIR----------------------------------- 271 (456)
T ss_pred --HHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCC-----------------------------------
Confidence 0011112223334445578999999999999999999765443
Q ss_pred hccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCC
Q 039491 747 LRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRR 826 (1379)
Q Consensus 747 L~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRr 826 (1379)
+..+||+|++.+|..++..|++|.++|||||+++++|||+|++++||+ ||. |.++.+|+||+|||||.
T Consensus 272 ----~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~----~~~----P~~~~~yvqR~GRaGR~ 339 (456)
T PRK10590 272 ----SAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN----YEL----PNVPEDYVHRIGRTGRA 339 (456)
T ss_pred ----EEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE----eCC----CCCHHHhhhhccccccC
Confidence 456999999999999999999999999999999999999999999999 999 99999999999999999
Q ss_pred CCCCcEEEEEEecCC
Q 039491 827 GLDKIGTVVVLCRDE 841 (1379)
Q Consensus 827 G~d~~G~vIil~~~~ 841 (1379)
|.. |.+++++..+
T Consensus 340 g~~--G~ai~l~~~~ 352 (456)
T PRK10590 340 AAT--GEALSLVCVD 352 (456)
T ss_pred CCC--eeEEEEecHH
Confidence 975 8888777543
No 14
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=8.5e-45 Score=419.47 Aligned_cols=324 Identities=29% Similarity=0.439 Sum_probs=264.9
Q ss_pred hhccCCCC-CCHHHHHHHHH-HHCCCcEEEEcCCCccHHHHHHHH-HHHHHhcCCcEEEecchHHHHHHHHHHHhccc--
Q 039491 393 LALDFPFE-LDNFQKEAIYY-LENGDSVFVAAHTSAGKTVVAEYA-FALATKHCTRAVYTAPIKTISNQKYRDFSGKF-- 467 (1379)
Q Consensus 393 ~a~~~pFe-L~~~Q~eAI~~-L~~g~sVlV~ApTGSGKTlvae~a-I~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-- 467 (1379)
+....+++ |.|.|.-|+.. ++.|+|.+|+.+|+||||+++++| |..++..+.+.+|++|..||+||+|++|++.+
T Consensus 208 ~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~ 287 (830)
T COG1202 208 MLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSK 287 (830)
T ss_pred HHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHHHhhc
Confidence 33446788 99999999998 799999999999999999999999 66677779999999999999999999999987
Q ss_pred ---cEEEEecC-----------cccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc
Q 039491 468 ---DVGLLTGD-----------VSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML 533 (1379)
Q Consensus 468 ---~VglltGd-----------v~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L 533 (1379)
.+.+-.|- +...++|+|+|+|+|-+.-+|..| ..+.+++.|||||+|.+.|.+||+.+.-+|..|
T Consensus 288 LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RL 366 (830)
T COG1202 288 LGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRL 366 (830)
T ss_pred ccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeeccchhcccchhhHHHHH
Confidence 34444442 233567999999999998888877 679999999999999999999999999988655
Q ss_pred ---CccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhh
Q 039491 534 ---PRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRK 610 (1379)
Q Consensus 534 ---p~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~ 610 (1379)
-+..|+|+||||+.|+.++|..++. ..+..+.|||||+.++..+. +.. ..|.. +..+.+.
T Consensus 367 r~l~~~AQ~i~LSATVgNp~elA~~l~a------~lV~y~~RPVplErHlvf~~--------~e~--eK~~i-i~~L~k~ 429 (830)
T COG1202 367 RYLFPGAQFIYLSATVGNPEELAKKLGA------KLVLYDERPVPLERHLVFAR--------NES--EKWDI-IARLVKR 429 (830)
T ss_pred HHhCCCCeEEEEEeecCChHHHHHHhCC------eeEeecCCCCChhHeeeeec--------Cch--HHHHH-HHHHHHH
Confidence 4679999999999999999999984 56778999999986654332 000 00100 0011000
Q ss_pred ccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEE
Q 039491 611 NLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVI 690 (1379)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIV 690 (1379)
. | -..-.+.-.+++||
T Consensus 430 E-------------------------~---------------------------------------~~~sskg~rGQtIV 445 (830)
T COG1202 430 E-------------------------F---------------------------------------STESSKGYRGQTIV 445 (830)
T ss_pred H-------------------------H---------------------------------------hhhhccCcCCceEE
Confidence 0 0 00000112468999
Q ss_pred EeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHh
Q 039491 691 FCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLF 770 (1379)
Q Consensus 691 Fv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF 770 (1379)
|++||+.|..+|..|...|+.+. .+|+||+-.+|..||..|
T Consensus 446 FT~SRrr~h~lA~~L~~kG~~a~---------------------------------------pYHaGL~y~eRk~vE~~F 486 (830)
T COG1202 446 FTYSRRRCHELADALTGKGLKAA---------------------------------------PYHAGLPYKERKSVERAF 486 (830)
T ss_pred EecchhhHHHHHHHhhcCCcccc---------------------------------------cccCCCcHHHHHHHHHHH
Confidence 99999999999999998887765 399999999999999999
Q ss_pred cCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCC
Q 039491 771 CRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 771 ~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~ 841 (1379)
.++.+.++|+|..++.|||+|+..|||.+... +..|+++.+|.||.|||||.+....|.||+++.+.
T Consensus 487 ~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaM----G~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 487 AAQELAAVVTTAALAAGVDFPASQVIFESLAM----GIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hcCCcceEeehhhhhcCCCCchHHHHHHHHHc----ccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 99999999999999999999999999986653 34499999999999999999999999999999763
No 15
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=5e-43 Score=425.80 Aligned_cols=326 Identities=19% Similarity=0.221 Sum_probs=267.3
Q ss_pred cccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc-------C
Q 039491 372 AWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH-------C 443 (1379)
Q Consensus 372 ~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~-------~ 443 (1379)
+|+++++.+.+.+.+.+ .+|+ |+++|.+|++++.+|++++++||||+|||++|+++++..+.. .
T Consensus 2 ~f~~l~l~~~l~~~l~~--------~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~ 73 (434)
T PRK11192 2 TFSELELDESLLEALQD--------KGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGP 73 (434)
T ss_pred CHhhcCCCHHHHHHHHH--------CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCC
Confidence 69999999999999987 7888 999999999999999999999999999999999999887632 3
Q ss_pred CcEEEecchHHHHHHHHHHHhccc-----cEEEEecCccc-------CCCCceeeecHHHHHHHHhcCcccCCCccEEEE
Q 039491 444 TRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSL-------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIF 511 (1379)
Q Consensus 444 ~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~i-------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~ 511 (1379)
.++||++||++|+.|+++.+.... +++.++|+... ....+|+|+||++|..++.++...++++++|||
T Consensus 74 ~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lVi 153 (434)
T PRK11192 74 PRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLIL 153 (434)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEE
Confidence 689999999999999988877654 78999998863 345789999999999999888778899999999
Q ss_pred eccCCCCCccchhHHHHHHHHcCccceEEEecccCCCh--HHHHHHHhhhcCCcEEEEccCCCCc--CceEEEeecCcee
Q 039491 512 DEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNT--VEFADWIGRTKQKKIRVTGTTKRPV--PLEHCLYYSGEFY 587 (1379)
Q Consensus 512 DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~--~efa~wl~~~~~~~i~vi~t~~Rpv--pLe~~l~~~~~l~ 587 (1379)
||||++.+.+++..++.+...++...|+++||||++.. .+|+.|+. ..++.+.....+.. .+.++++...
T Consensus 154 DEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~i~~~~~~~~--- 227 (434)
T PRK11192 154 DEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLL---NDPVEVEAEPSRRERKKIHQWYYRAD--- 227 (434)
T ss_pred ECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHc---cCCEEEEecCCcccccCceEEEEEeC---
Confidence 99999999999999999999899889999999999753 46666654 33444332221111 1222221110
Q ss_pred eeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCccccc
Q 039491 588 KVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRR 667 (1379)
Q Consensus 588 ~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~ 667 (1379)
.
T Consensus 228 ----~--------------------------------------------------------------------------- 228 (434)
T PRK11192 228 ----D--------------------------------------------------------------------------- 228 (434)
T ss_pred ----C---------------------------------------------------------------------------
Confidence 0
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhh
Q 039491 668 SEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLL 747 (1379)
Q Consensus 668 ~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL 747 (1379)
.......+...+......++||||+++..|+.++..|...++.
T Consensus 229 -~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~------------------------------------ 271 (434)
T PRK11192 229 -LEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGIN------------------------------------ 271 (434)
T ss_pred -HHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCC------------------------------------
Confidence 0112223334444445679999999999999999999764432
Q ss_pred ccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCC
Q 039491 748 RRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRG 827 (1379)
Q Consensus 748 ~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG 827 (1379)
+.++||+|++.+|..++..|++|.++|||||+++++|||+|++++||+ ||. |.+...|+||+|||||.|
T Consensus 272 ---~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~----~d~----p~s~~~yiqr~GR~gR~g 340 (434)
T PRK11192 272 ---CCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN----FDM----PRSADTYLHRIGRTGRAG 340 (434)
T ss_pred ---EEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE----ECC----CCCHHHHhhcccccccCC
Confidence 667999999999999999999999999999999999999999999999 999 999999999999999999
Q ss_pred CCCcEEEEEEecC
Q 039491 828 LDKIGTVVVLCRD 840 (1379)
Q Consensus 828 ~d~~G~vIil~~~ 840 (1379)
.. |.+++++..
T Consensus 341 ~~--g~ai~l~~~ 351 (434)
T PRK11192 341 RK--GTAISLVEA 351 (434)
T ss_pred CC--ceEEEEecH
Confidence 76 888888754
No 16
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-43 Score=434.54 Aligned_cols=339 Identities=22% Similarity=0.290 Sum_probs=286.6
Q ss_pred ccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc--CC--c
Q 039491 371 EAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH--CT--R 445 (1379)
Q Consensus 371 ~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~--~~--r 445 (1379)
..|+++++.+.++.++.+ .+|+ |+|+|.++|+.++.|+++++.|+||+|||++|.+|++..+.. .. .
T Consensus 29 ~~F~~l~l~~~ll~~l~~--------~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~ 100 (513)
T COG0513 29 PEFASLGLSPELLQALKD--------LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYV 100 (513)
T ss_pred CCHhhcCCCHHHHHHHHH--------cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCC
Confidence 679999999999999988 7888 999999999999999999999999999999999999998862 21 2
Q ss_pred -EEEecchHHHHHHHHHHHhccc------cEEEEecCcccC-------CCCceeeecHHHHHHHHhcCcccCCCccEEEE
Q 039491 446 -AVYTAPIKTISNQKYRDFSGKF------DVGLLTGDVSLR-------PEASCLIMTTEILRSMLYRGADIIRDIEWVIF 511 (1379)
Q Consensus 446 -aIylsPtkaLsnQk~~~~~~~f------~VglltGdv~in-------~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~ 511 (1379)
+|+++|||+|+.|+++.+.... ++..++|+.++. ..++|+|+||++|.+++.++...+..++++|+
T Consensus 101 ~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVl 180 (513)
T COG0513 101 SALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVL 180 (513)
T ss_pred ceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEe
Confidence 9999999999999999888754 477899988743 34899999999999999999889999999999
Q ss_pred eccCCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCC----CCcCceEEEeecCcee
Q 039491 512 DEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTK----RPVPLEHCLYYSGEFY 587 (1379)
Q Consensus 512 DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~----RpvpLe~~l~~~~~l~ 587 (1379)
|||+.|+|.++...++.++..+|...|++++|||+|. .+..|......++..+..... -+..++++++...
T Consensus 181 DEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~--~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~--- 255 (513)
T COG0513 181 DEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPD--DIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVE--- 255 (513)
T ss_pred ccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCH--HHHHHHHHHccCCcEEEEccccccccccCceEEEEEeC---
Confidence 9999999999999999999999999999999999998 366777777777765544421 2233555554322
Q ss_pred eeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCccccc
Q 039491 588 KVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRR 667 (1379)
Q Consensus 588 ~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~ 667 (1379)
.
T Consensus 256 ----~--------------------------------------------------------------------------- 256 (513)
T COG0513 256 ----S--------------------------------------------------------------------------- 256 (513)
T ss_pred ----C---------------------------------------------------------------------------
Confidence 0
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhh
Q 039491 668 SEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLL 747 (1379)
Q Consensus 668 ~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL 747 (1379)
...++..|...+.......+||||+|+..|+.++..|...|+.
T Consensus 257 -~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~------------------------------------ 299 (513)
T COG0513 257 -EEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFK------------------------------------ 299 (513)
T ss_pred -HHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCe------------------------------------
Confidence 0124455566666655567999999999999999999887655
Q ss_pred ccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCC
Q 039491 748 RRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRG 827 (1379)
Q Consensus 748 ~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG 827 (1379)
++.+||+|++.+|+.++..|++|.++|||||+++|+|||+|.+++||+ ||+ |.++..|+||+||+||.|
T Consensus 300 ---~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vin----yD~----p~~~e~yvHRiGRTgRaG 368 (513)
T COG0513 300 ---VAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVIN----YDL----PLDPEDYVHRIGRTGRAG 368 (513)
T ss_pred ---EEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEE----ccC----CCCHHHheeccCccccCC
Confidence 456999999999999999999999999999999999999999999999 999 999999999999999999
Q ss_pred CCCcEEEEEEecCCCCCHHHHHHHH
Q 039491 828 LDKIGTVVVLCRDEIPGESDLKHII 852 (1379)
Q Consensus 828 ~d~~G~vIil~~~~~~~~~~l~~li 852 (1379)
.. |.+|.++.+.. +...+.++.
T Consensus 369 ~~--G~ai~fv~~~~-e~~~l~~ie 390 (513)
T COG0513 369 RK--GVAISFVTEEE-EVKKLKRIE 390 (513)
T ss_pred CC--CeEEEEeCcHH-HHHHHHHHH
Confidence 65 99999998632 334444443
No 17
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.1e-43 Score=435.74 Aligned_cols=332 Identities=16% Similarity=0.178 Sum_probs=266.7
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh------
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK------ 441 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~------ 441 (1379)
+..+|+++++.+.+++.+.+ .+|+ |+++|.+|++.+++|++++++||||||||++|.+|++..+.
T Consensus 128 p~~~f~~~~l~~~l~~~l~~--------~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~ 199 (545)
T PTZ00110 128 PVVSFEYTSFPDYILKSLKN--------AGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLR 199 (545)
T ss_pred ccCCHhhcCCCHHHHHHHHH--------CCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccccc
Confidence 45789999999999988887 7888 99999999999999999999999999999999999876652
Q ss_pred --cCCcEEEecchHHHHHHHHHHHhccc-----cEEEEecCccc-------CCCCceeeecHHHHHHHHhcCcccCCCcc
Q 039491 442 --HCTRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSL-------RPEASCLIMTTEILRSMLYRGADIIRDIE 507 (1379)
Q Consensus 442 --~~~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~i-------n~~a~IlV~TpEiL~smL~~~~~~l~~v~ 507 (1379)
.+.++||++||++|+.|+++.+++.. ++..+.|+... ...++|+|+||++|.+++.++...+++++
T Consensus 200 ~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~ 279 (545)
T PTZ00110 200 YGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVT 279 (545)
T ss_pred CCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCc
Confidence 25689999999999999998888754 56677777653 34579999999999999998888899999
Q ss_pred EEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChH-HHHHHHhhhcCCcEEEEccCCCC---cCceEEEeec
Q 039491 508 WVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTV-EFADWIGRTKQKKIRVTGTTKRP---VPLEHCLYYS 583 (1379)
Q Consensus 508 lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~-efa~wl~~~~~~~i~vi~t~~Rp---vpLe~~l~~~ 583 (1379)
+|||||||++.+.++...+..++..+++..|++++|||+|... .++.++.. ..++.+....... ..+.+.++.
T Consensus 280 ~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~--~~~v~i~vg~~~l~~~~~i~q~~~~- 356 (545)
T PTZ00110 280 YLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCK--EEPVHVNVGSLDLTACHNIKQEVFV- 356 (545)
T ss_pred EEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhc--cCCEEEEECCCccccCCCeeEEEEE-
Confidence 9999999999999999999999999999999999999998654 45555432 1233332211110 011111110
Q ss_pred CceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCc
Q 039491 584 GEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNW 663 (1379)
Q Consensus 584 ~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~ 663 (1379)
++.
T Consensus 357 ------~~~----------------------------------------------------------------------- 359 (545)
T PTZ00110 357 ------VEE----------------------------------------------------------------------- 359 (545)
T ss_pred ------Eec-----------------------------------------------------------------------
Confidence 000
Q ss_pred ccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHH
Q 039491 664 GLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRV 743 (1379)
Q Consensus 664 ~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l 743 (1379)
......+..++..+.. ...++||||++++.|+.++..|...++.
T Consensus 360 ---~~k~~~L~~ll~~~~~-~~~k~LIF~~t~~~a~~l~~~L~~~g~~-------------------------------- 403 (545)
T PTZ00110 360 ---HEKRGKLKMLLQRIMR-DGDKILIFVETKKGADFLTKELRLDGWP-------------------------------- 403 (545)
T ss_pred ---hhHHHHHHHHHHHhcc-cCCeEEEEecChHHHHHHHHHHHHcCCc--------------------------------
Confidence 0012223334443332 4579999999999999999999765443
Q ss_pred HHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhccc
Q 039491 744 QSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRA 823 (1379)
Q Consensus 744 ~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRA 823 (1379)
+..+||++++.+|+.++..|++|.++|||||+++++|||+|++++||+ ||. |.+..+|+||+|||
T Consensus 404 -------~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~----~d~----P~s~~~yvqRiGRt 468 (545)
T PTZ00110 404 -------ALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVIN----FDF----PNQIEDYVHRIGRT 468 (545)
T ss_pred -------EEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEE----eCC----CCCHHHHHHHhccc
Confidence 346999999999999999999999999999999999999999999999 999 99999999999999
Q ss_pred CCCCCCCcEEEEEEecCC
Q 039491 824 GRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 824 GRrG~d~~G~vIil~~~~ 841 (1379)
||.|.. |.+|.+++++
T Consensus 469 GR~G~~--G~ai~~~~~~ 484 (545)
T PTZ00110 469 GRAGAK--GASYTFLTPD 484 (545)
T ss_pred ccCCCC--ceEEEEECcc
Confidence 999975 9999998765
No 18
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5e-43 Score=436.49 Aligned_cols=328 Identities=17% Similarity=0.204 Sum_probs=265.4
Q ss_pred ccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc-------
Q 039491 371 EAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH------- 442 (1379)
Q Consensus 371 ~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~------- 442 (1379)
.+|+++++.+.+++.+.+ ++|+ |+++|.++|+.+++|+|++++||||||||++|+++++..+..
T Consensus 9 ~~f~~l~l~~~l~~~L~~--------~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~ 80 (572)
T PRK04537 9 LTFSSFDLHPALLAGLES--------AGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADR 80 (572)
T ss_pred CChhhcCCCHHHHHHHHH--------CCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccccc
Confidence 479999999999999977 7888 999999999999999999999999999999999999887621
Q ss_pred ---CCcEEEecchHHHHHHHHHHHhccc-----cEEEEecCccc-------CCCCceeeecHHHHHHHHhcC-cccCCCc
Q 039491 443 ---CTRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSL-------RPEASCLIMTTEILRSMLYRG-ADIIRDI 506 (1379)
Q Consensus 443 ---~~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~i-------n~~a~IlV~TpEiL~smL~~~-~~~l~~v 506 (1379)
..++||++||++|++|+++.+.+.+ +++.++|+... +...+|+|+||++|.+++.+. ...+..+
T Consensus 81 ~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 81 KPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred ccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhhe
Confidence 3689999999999999999988765 68889998764 335789999999999998765 3567899
Q ss_pred cEEEEeccCCCCCccchhHHHHHHHHcCc--cceEEEecccCCChHHHHHHHhhhcCCcEEEEccCC--CCcCceEEEee
Q 039491 507 EWVIFDEVHYVNDIERGVVWEEVIIMLPR--HINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTK--RPVPLEHCLYY 582 (1379)
Q Consensus 507 ~lVI~DEaH~l~d~~rG~v~eeii~~Lp~--~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~--RpvpLe~~l~~ 582 (1379)
++|||||||++.+.++...++.++..++. ..|+++||||+++.. ..........+..+..... ....+.++++.
T Consensus 161 ~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v--~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~ 238 (572)
T PRK04537 161 EICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRV--LELAYEHMNEPEKLVVETETITAARVRQRIYF 238 (572)
T ss_pred eeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHH--HHHHHHHhcCCcEEEeccccccccceeEEEEe
Confidence 99999999999999888888999988886 689999999998653 1222222222322222111 11112222211
Q ss_pred cCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCC
Q 039491 583 SGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNN 662 (1379)
Q Consensus 583 ~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~ 662 (1379)
..
T Consensus 239 ~~------------------------------------------------------------------------------ 240 (572)
T PRK04537 239 PA------------------------------------------------------------------------------ 240 (572)
T ss_pred cC------------------------------------------------------------------------------
Confidence 00
Q ss_pred cccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHH
Q 039491 663 WGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVR 742 (1379)
Q Consensus 663 ~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~ 742 (1379)
...+...++..+......++||||+|+..|+.+++.|...++.
T Consensus 241 ------~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~------------------------------- 283 (572)
T PRK04537 241 ------DEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYR------------------------------- 283 (572)
T ss_pred ------HHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCC-------------------------------
Confidence 1223344555666666789999999999999999999765432
Q ss_pred HHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcc
Q 039491 743 VQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGR 822 (1379)
Q Consensus 743 l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGR 822 (1379)
++++||+|++.+|+.+++.|++|.++|||||+++++|||+|++++||+ ||. |.++.+|+||+||
T Consensus 284 --------v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIn----yd~----P~s~~~yvqRiGR 347 (572)
T PRK04537 284 --------VGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYN----YDL----PFDAEDYVHRIGR 347 (572)
T ss_pred --------EEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEE----cCC----CCCHHHHhhhhcc
Confidence 678999999999999999999999999999999999999999999999 998 9999999999999
Q ss_pred cCCCCCCCcEEEEEEecCC
Q 039491 823 AGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 823 AGRrG~d~~G~vIil~~~~ 841 (1379)
|||.|.. |.+|+++.+.
T Consensus 348 aGR~G~~--G~ai~~~~~~ 364 (572)
T PRK04537 348 TARLGEE--GDAISFACER 364 (572)
T ss_pred cccCCCC--ceEEEEecHH
Confidence 9999976 8999888653
No 19
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-44 Score=410.27 Aligned_cols=343 Identities=18% Similarity=0.226 Sum_probs=285.5
Q ss_pred cccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHH------hc
Q 039491 370 KEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALAT------KH 442 (1379)
Q Consensus 370 ~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l------~~ 442 (1379)
..+|..|.++..+++++.. .||. |+|+|..+||..+-|++++.||.||||||.+|.+||+..+ ..
T Consensus 180 ~~sF~~mNLSRPlLka~~~--------lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~ 251 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACST--------LGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVA 251 (691)
T ss_pred hhhHHhcccchHHHHHHHh--------cCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCc
Confidence 4589999999999999887 7898 9999999999999999999999999999999999999987 23
Q ss_pred CCcEEEecchHHHHHHHHHHHhccc-----cEEEEecCcccC-------CCCceeeecHHHHHHHHhcC-cccCCCccEE
Q 039491 443 CTRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSLR-------PEASCLIMTTEILRSMLYRG-ADIIRDIEWV 509 (1379)
Q Consensus 443 ~~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~in-------~~a~IlV~TpEiL~smL~~~-~~~l~~v~lV 509 (1379)
.+|||+++|||+|+.|.+...++.. .||++.|+.++. ...+|+|+||++|.++|.+. +..+.+++++
T Consensus 252 ~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVL 331 (691)
T KOG0338|consen 252 ATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVL 331 (691)
T ss_pred ceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEE
Confidence 5899999999999999988887753 899999999864 45799999999999999874 5678999999
Q ss_pred EEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcC--ceEEEeecCcee
Q 039491 510 IFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVP--LEHCLYYSGEFY 587 (1379)
Q Consensus 510 I~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~Rpvp--Le~~l~~~~~l~ 587 (1379)
|+|||++|++.+|...+.++|.++|++.|.++||||+... +-+.+....++|+.++..+...++ |.+.++
T Consensus 332 vlDEADRMLeegFademnEii~lcpk~RQTmLFSATMtee--VkdL~slSL~kPvrifvd~~~~~a~~LtQEFi------ 403 (691)
T KOG0338|consen 332 VLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEE--VKDLASLSLNKPVRIFVDPNKDTAPKLTQEFI------ 403 (691)
T ss_pred EechHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHH--HHHHHHhhcCCCeEEEeCCccccchhhhHHHh------
Confidence 9999999999999999999999999999999999998764 446666667788887766544332 211110
Q ss_pred eeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCccccc
Q 039491 588 KVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRR 667 (1379)
Q Consensus 588 ~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~ 667 (1379)
.| |.+|..
T Consensus 404 RI---------------------------------------------------R~~re~--------------------- 411 (691)
T KOG0338|consen 404 RI---------------------------------------------------RPKREG--------------------- 411 (691)
T ss_pred ee---------------------------------------------------cccccc---------------------
Confidence 00 000000
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhh
Q 039491 668 SEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLL 747 (1379)
Q Consensus 668 ~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL 747 (1379)
.....+..|+..+ -...+|||+.|++.|..+.-.|.-+|+..
T Consensus 412 dRea~l~~l~~rt---f~~~~ivFv~tKk~AHRl~IllGLlgl~a----------------------------------- 453 (691)
T KOG0338|consen 412 DREAMLASLITRT---FQDRTIVFVRTKKQAHRLRILLGLLGLKA----------------------------------- 453 (691)
T ss_pred ccHHHHHHHHHHh---cccceEEEEehHHHHHHHHHHHHHhhchh-----------------------------------
Confidence 0123344444433 34689999999999999877776555544
Q ss_pred ccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCC
Q 039491 748 RRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRG 827 (1379)
Q Consensus 748 ~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG 827 (1379)
|-+||.|++.+|-..+..|+++.++|||||+++++|+||+.+.+||+ |+. |.+...|+||+||+.|+|
T Consensus 454 ----gElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN----y~m----P~t~e~Y~HRVGRTARAG 521 (691)
T KOG0338|consen 454 ----GELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVIN----YAM----PKTIEHYLHRVGRTARAG 521 (691)
T ss_pred ----hhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEe----ccC----chhHHHHHHHhhhhhhcc
Confidence 44999999999999999999999999999999999999999999999 999 999999999999999999
Q ss_pred CCCcEEEEEEecCCCCCHHHHHHHHhc
Q 039491 828 LDKIGTVVVLCRDEIPGESDLKHIIVG 854 (1379)
Q Consensus 828 ~d~~G~vIil~~~~~~~~~~l~~li~g 854 (1379)
+. |.+|.++.+. +.+.++.++..
T Consensus 522 Ra--GrsVtlvgE~--dRkllK~iik~ 544 (691)
T KOG0338|consen 522 RA--GRSVTLVGES--DRKLLKEIIKS 544 (691)
T ss_pred cC--cceEEEeccc--cHHHHHHHHhh
Confidence 86 9999999887 77888888876
No 20
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-43 Score=417.91 Aligned_cols=335 Identities=20% Similarity=0.278 Sum_probs=272.0
Q ss_pred cccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc------
Q 039491 370 KEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH------ 442 (1379)
Q Consensus 370 ~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~------ 442 (1379)
...|+++++++..+..+.. -+|+ |+|+|.++++.+..|++++..|.||||||++|.+|+...+.+
T Consensus 90 ~~~f~~~~ls~~~~~~lk~--------~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~ 161 (519)
T KOG0331|consen 90 SAAFQELGLSEELMKALKE--------QGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLS 161 (519)
T ss_pred chhhhcccccHHHHHHHHh--------cCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhcccccc
Confidence 3489999999998888877 6788 999999999999999999999999999999999999888854
Q ss_pred ---CCcEEEecchHHHHHHHHHHHhccc-----cEEEEecCcccCC-------CCceeeecHHHHHHHHhcCcccCCCcc
Q 039491 443 ---CTRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSLRP-------EASCLIMTTEILRSMLYRGADIIRDIE 507 (1379)
Q Consensus 443 ---~~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~in~-------~a~IlV~TpEiL~smL~~~~~~l~~v~ 507 (1379)
++++|+++|||+||+|+.+++.+.. +..+++|+.+..+ .++|+|+||++|..++..+...++++.
T Consensus 162 ~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ 241 (519)
T KOG0331|consen 162 RGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVT 241 (519)
T ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCcccccee
Confidence 6899999999999999999988876 4778899988654 478999999999999999999999999
Q ss_pred EEEEeccCCCCCccchhHHHHHHHHcC-ccceEEEecccCCChH-HHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCc
Q 039491 508 WVIFDEVHYVNDIERGVVWEEVIIMLP-RHINIVLLSATVPNTV-EFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGE 585 (1379)
Q Consensus 508 lVI~DEaH~l~d~~rG~v~eeii~~Lp-~~vqiIlLSATvpN~~-efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~ 585 (1379)
++|+||||.|.|.++...++.++..+| +..|+++.|||.|... .+|.-+- .+++.+......-....| .
T Consensus 242 ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl---~~~~~i~ig~~~~~~a~~------~ 312 (519)
T KOG0331|consen 242 YLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFL---NNPIQINVGNKKELKANH------N 312 (519)
T ss_pred EEEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHh---cCceEEEecchhhhhhhc------c
Confidence 999999999999999999999999994 5558999999998654 4444332 122222211100000000 0
Q ss_pred eeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCccc
Q 039491 586 FYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGL 665 (1379)
Q Consensus 586 l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~ 665 (1379)
+-.+++ . -.
T Consensus 313 i~qive--------------~---------------------------------------------------------~~ 321 (519)
T KOG0331|consen 313 IRQIVE--------------V---------------------------------------------------------CD 321 (519)
T ss_pred hhhhhh--------------h---------------------------------------------------------cC
Confidence 000000 0 00
Q ss_pred ccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHH
Q 039491 666 RRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQS 745 (1379)
Q Consensus 666 ~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~ 745 (1379)
.......+..++.........++||||.+++.|++++..|+..++.+
T Consensus 322 ~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a--------------------------------- 368 (519)
T KOG0331|consen 322 ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPA--------------------------------- 368 (519)
T ss_pred HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcce---------------------------------
Confidence 01124455666666665556799999999999999999998765544
Q ss_pred hhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCC
Q 039491 746 LLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGR 825 (1379)
Q Consensus 746 lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGR 825 (1379)
..+||+.++.+|+.++..|++|...|||||+++|+|||+|++++||+ ||. |.+..+|+||+||+||
T Consensus 369 ------~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn----ydf----P~~vEdYVHRiGRTGR 434 (519)
T KOG0331|consen 369 ------VAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN----YDF----PNNVEDYVHRIGRTGR 434 (519)
T ss_pred ------eeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEe----CCC----CCCHHHHHhhcCcccc
Confidence 35999999999999999999999999999999999999999999999 999 9999999999999999
Q ss_pred CCCCCcEEEEEEecCC
Q 039491 826 RGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 826 rG~d~~G~vIil~~~~ 841 (1379)
+|.. |+++.|.+..
T Consensus 435 a~~~--G~A~tfft~~ 448 (519)
T KOG0331|consen 435 AGKK--GTAITFFTSD 448 (519)
T ss_pred CCCC--ceEEEEEeHH
Confidence 9864 9999998764
No 21
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=7.7e-43 Score=431.72 Aligned_cols=329 Identities=21% Similarity=0.214 Sum_probs=259.1
Q ss_pred cccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh-----
Q 039491 368 QQKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK----- 441 (1379)
Q Consensus 368 ~~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~----- 441 (1379)
.+..+|+++++.+.+++++.+ .+|+ |+|+|.+||+.+.+|+|++++||||||||++|++|++..+.
T Consensus 118 ~pi~~f~~~~l~~~l~~~L~~--------~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~ 189 (518)
T PLN00206 118 PPILSFSSCGLPPKLLLNLET--------AGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSG 189 (518)
T ss_pred chhcCHHhCCCCHHHHHHHHH--------cCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccc
Confidence 456789999999999998877 7887 99999999999999999999999999999999999887652
Q ss_pred -----cCCcEEEecchHHHHHHHHHHHhccc-----cEEEEecCcc-------cCCCCceeeecHHHHHHHHhcCcccCC
Q 039491 442 -----HCTRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVS-------LRPEASCLIMTTEILRSMLYRGADIIR 504 (1379)
Q Consensus 442 -----~~~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~-------in~~a~IlV~TpEiL~smL~~~~~~l~ 504 (1379)
.+.++||++||++|+.|+++.++... .+..+.|+.. +....+|+|+||++|.+++.++...++
T Consensus 190 ~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~ 269 (518)
T PLN00206 190 HPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELD 269 (518)
T ss_pred cccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccch
Confidence 45789999999999999888777654 4455555543 344679999999999999998888899
Q ss_pred CccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChH-HHHHHHhhhcCCcEEEEcc-CCCCcC-ceEEEe
Q 039491 505 DIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTV-EFADWIGRTKQKKIRVTGT-TKRPVP-LEHCLY 581 (1379)
Q Consensus 505 ~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~-efa~wl~~~~~~~i~vi~t-~~Rpvp-Le~~l~ 581 (1379)
++++|||||||+|.+.++......++..++ ..|++++|||+++.. .++.++. ..++.+... ..++.. +.+.+.
T Consensus 270 ~v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~---~~~~~i~~~~~~~~~~~v~q~~~ 345 (518)
T PLN00206 270 NVSVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLA---KDIILISIGNPNRPNKAVKQLAI 345 (518)
T ss_pred heeEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhC---CCCEEEEeCCCCCCCcceeEEEE
Confidence 999999999999999888888888888776 479999999998764 4555554 233333221 122211 111111
Q ss_pred ecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCC
Q 039491 582 YSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQN 661 (1379)
Q Consensus 582 ~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~ 661 (1379)
. ++
T Consensus 346 ~-------~~---------------------------------------------------------------------- 348 (518)
T PLN00206 346 W-------VE---------------------------------------------------------------------- 348 (518)
T ss_pred e-------cc----------------------------------------------------------------------
Confidence 0 00
Q ss_pred CcccccchhHHHHHHHHHHHh--CCCCCEEEEeCChhHHHHHHHHhhc-CCCCCchhhhHHHHHHHHHhhhccCCCCCch
Q 039491 662 NWGLRRSEVSIWLTLINKLSK--KSLLPVVIFCFSKNHCDKLADGMSG-IDLTSSSEKSEIRVFCDKAFSRLKGSDRNLP 738 (1379)
Q Consensus 662 ~~~~~~~~~~~~~~Li~~L~~--~~~~pvIVFv~Srk~ce~lA~~L~~-~~l~~~~ek~~i~~~~~~~~~~L~~edr~lp 738 (1379)
.......+...+.. ....++||||+|+..|+.++..|.. .++
T Consensus 349 -------~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~---------------------------- 393 (518)
T PLN00206 349 -------TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGL---------------------------- 393 (518)
T ss_pred -------chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCc----------------------------
Confidence 00111223333322 1235899999999999999988854 122
Q ss_pred hHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHH
Q 039491 739 QIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQ 818 (1379)
Q Consensus 739 qi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQ 818 (1379)
.+..+||+|++.+|+.+++.|++|.++|||||+++++|||+|++++||+ ||. |.+..+|+|
T Consensus 394 -----------~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~----~d~----P~s~~~yih 454 (518)
T PLN00206 394 -----------KALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII----FDM----PNTIKEYIH 454 (518)
T ss_pred -----------ceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE----eCC----CCCHHHHHH
Confidence 2567999999999999999999999999999999999999999999999 999 999999999
Q ss_pred HhcccCCCCCCCcEEEEEEecCC
Q 039491 819 MAGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 819 maGRAGRrG~d~~G~vIil~~~~ 841 (1379)
|+|||||.|.. |.++++++++
T Consensus 455 RiGRaGR~g~~--G~ai~f~~~~ 475 (518)
T PLN00206 455 QIGRASRMGEK--GTAIVFVNEE 475 (518)
T ss_pred hccccccCCCC--eEEEEEEchh
Confidence 99999999964 9999998754
No 22
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.9e-42 Score=433.85 Aligned_cols=329 Identities=19% Similarity=0.239 Sum_probs=268.2
Q ss_pred cccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh---cCCc
Q 039491 370 KEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK---HCTR 445 (1379)
Q Consensus 370 ~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~---~~~r 445 (1379)
..+|+++++++.+++++.+ ++|+ |+|+|.++|+.+.+|++++++||||+|||++|.++++..+. .+.+
T Consensus 5 ~~~f~~l~L~~~ll~al~~--------~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~ 76 (629)
T PRK11634 5 ETTFADLGLKAPILEALND--------LGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQ 76 (629)
T ss_pred cCCHhhcCCCHHHHHHHHH--------CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCe
Confidence 3469999999999999987 7888 99999999999999999999999999999999999988774 3468
Q ss_pred EEEecchHHHHHHHHHHHhccc------cEEEEecCccc-------CCCCceeeecHHHHHHHHhcCcccCCCccEEEEe
Q 039491 446 AVYTAPIKTISNQKYRDFSGKF------DVGLLTGDVSL-------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFD 512 (1379)
Q Consensus 446 aIylsPtkaLsnQk~~~~~~~f------~VglltGdv~i-------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~D 512 (1379)
+||++||++|+.|+++.+.... .+..++|+.++ ...++|+|+||++|.+++.++...+.++++||||
T Consensus 77 ~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlD 156 (629)
T PRK11634 77 ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLD 156 (629)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEec
Confidence 9999999999999988876643 56677777653 3467999999999999999888889999999999
Q ss_pred ccCCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCC--CCcCceEEEeecCceeeec
Q 039491 513 EVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTK--RPVPLEHCLYYSGEFYKVC 590 (1379)
Q Consensus 513 EaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~--RpvpLe~~l~~~~~l~~i~ 590 (1379)
|||.|.+.++...++.++..+|...|+++||||+|+... .........+..+..... ....+.+.++...
T Consensus 157 EAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~--~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~------ 228 (629)
T PRK11634 157 EADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIR--RITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW------ 228 (629)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHH--HHHHHHcCCCeEEEccCccccCCceEEEEEEec------
Confidence 999999998889999999999999999999999997642 222222233333322111 1111222211100
Q ss_pred cCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchh
Q 039491 591 ENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEV 670 (1379)
Q Consensus 591 d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1379)
..
T Consensus 229 ------------------------------------------------------------------------------~~ 230 (629)
T PRK11634 229 ------------------------------------------------------------------------------GM 230 (629)
T ss_pred ------------------------------------------------------------------------------hh
Confidence 11
Q ss_pred HHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccc
Q 039491 671 SIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRG 750 (1379)
Q Consensus 671 ~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rG 750 (1379)
.+...+.+.+......++||||+|+..|+.++..|...++.
T Consensus 231 ~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~--------------------------------------- 271 (629)
T PRK11634 231 RKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYN--------------------------------------- 271 (629)
T ss_pred hHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCC---------------------------------------
Confidence 22344556666666678999999999999999999876543
Q ss_pred eEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCC
Q 039491 751 IAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDK 830 (1379)
Q Consensus 751 IavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~ 830 (1379)
+..+||+|++.+|+.++..|++|.++|||||+++++|||+|.+++||+ ||. |.++..|+||+|||||.|..
T Consensus 272 ~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~----~d~----P~~~e~yvqRiGRtGRaGr~- 342 (629)
T PRK11634 272 SAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN----YDI----PMDSESYVHRIGRTGRAGRA- 342 (629)
T ss_pred EEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE----eCC----CCCHHHHHHHhccccCCCCc-
Confidence 456999999999999999999999999999999999999999999999 999 99999999999999999975
Q ss_pred cEEEEEEecCC
Q 039491 831 IGTVVVLCRDE 841 (1379)
Q Consensus 831 ~G~vIil~~~~ 841 (1379)
|.+|+++.+.
T Consensus 343 -G~ai~~v~~~ 352 (629)
T PRK11634 343 -GRALLFVENR 352 (629)
T ss_pred -ceEEEEechH
Confidence 9999998753
No 23
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.3e-42 Score=417.51 Aligned_cols=330 Identities=18% Similarity=0.260 Sum_probs=262.6
Q ss_pred cccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh---cCCc
Q 039491 370 KEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK---HCTR 445 (1379)
Q Consensus 370 ~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~---~~~r 445 (1379)
..+|..+++.+.+..++.. ++|+ |+++|.+|++.+.+|++++++||||||||++|.+++...+. .+.+
T Consensus 27 ~~~~~~l~l~~~~~~~l~~--------~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~ 98 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYS--------YGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQ 98 (401)
T ss_pred cCCHhhCCCCHHHHHHHHH--------cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCce
Confidence 4679999999999888877 7887 99999999999999999999999999999999999988774 4678
Q ss_pred EEEecchHHHHHHHHHHHhccc-----cEEEEecCccc-------CCCCceeeecHHHHHHHHhcCcccCCCccEEEEec
Q 039491 446 AVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSL-------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDE 513 (1379)
Q Consensus 446 aIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~i-------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DE 513 (1379)
+||++|+++|++|+++.+...+ .++.++|+... ....+|+|+||+.|.+++.++...++++++|||||
T Consensus 99 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDE 178 (401)
T PTZ00424 99 ALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDE 178 (401)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEec
Confidence 9999999999999998887765 45666777542 33468999999999999988888899999999999
Q ss_pred cCCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCC--CcCceEEEeecCceeeecc
Q 039491 514 VHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKR--PVPLEHCLYYSGEFYKVCE 591 (1379)
Q Consensus 514 aH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~R--pvpLe~~l~~~~~l~~i~d 591 (1379)
||++.+.+++..+.+++..+++.+|++++|||+++.. .++.......+..+...... ...+.+++. ..+
T Consensus 179 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 249 (401)
T PTZ00424 179 ADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEI--LELTTKFMRDPKRILVKKDELTLEGIRQFYV-------AVE 249 (401)
T ss_pred HHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHH--HHHHHHHcCCCEEEEeCCCCcccCCceEEEE-------ecC
Confidence 9999988888888899999999999999999998753 23333222223222211100 001111110 000
Q ss_pred CcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhH
Q 039491 592 NEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVS 671 (1379)
Q Consensus 592 ~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1379)
. ...
T Consensus 250 ~----------------------------------------------------------------------------~~~ 253 (401)
T PTZ00424 250 K----------------------------------------------------------------------------EEW 253 (401)
T ss_pred h----------------------------------------------------------------------------HHH
Confidence 0 011
Q ss_pred HHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccce
Q 039491 672 IWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGI 751 (1379)
Q Consensus 672 ~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGI 751 (1379)
....+...+......++||||+|+++|+.++..|...++ ++
T Consensus 254 ~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~---------------------------------------~~ 294 (401)
T PTZ00424 254 KFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDF---------------------------------------TV 294 (401)
T ss_pred HHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCC---------------------------------------cE
Confidence 122233334444457899999999999999998865432 37
Q ss_pred EEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCc
Q 039491 752 AIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKI 831 (1379)
Q Consensus 752 avhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~ 831 (1379)
+++||+|++.+|..++..|++|.++|||||+++++|||+|++++||+ ||. |.+..+|+||+|||||.|..
T Consensus 295 ~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~----~~~----p~s~~~y~qr~GRagR~g~~-- 364 (401)
T PTZ00424 295 SCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN----YDL----PASPENYIHRIGRSGRFGRK-- 364 (401)
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE----ECC----CCCHHHEeecccccccCCCC--
Confidence 78999999999999999999999999999999999999999999999 998 89999999999999999965
Q ss_pred EEEEEEecCC
Q 039491 832 GTVVVLCRDE 841 (1379)
Q Consensus 832 G~vIil~~~~ 841 (1379)
|.||++++++
T Consensus 365 G~~i~l~~~~ 374 (401)
T PTZ00424 365 GVAINFVTPD 374 (401)
T ss_pred ceEEEEEcHH
Confidence 9999999764
No 24
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-41 Score=417.69 Aligned_cols=329 Identities=19% Similarity=0.230 Sum_probs=261.8
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc-----
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH----- 442 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~----- 442 (1379)
....|..+.+.+.+...+.+ ++|+ |+++|.+|++++.+|+|++++||||||||++|.++++..+..
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~--------~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~ 156 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHD--------LGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPK 156 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHH--------CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCccc
Confidence 34578888999999888887 7888 999999999999999999999999999999999999887632
Q ss_pred -----CCcEEEecchHHHHHHHHHHHhccc-----cEEEEecCccc--------CCCCceeeecHHHHHHHHhcCcccCC
Q 039491 443 -----CTRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSL--------RPEASCLIMTTEILRSMLYRGADIIR 504 (1379)
Q Consensus 443 -----~~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~i--------n~~a~IlV~TpEiL~smL~~~~~~l~ 504 (1379)
..++||++||++|+.|+++.++... .+..++|+... ....+|+|+||++|..++.++...++
T Consensus 157 ~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~ 236 (475)
T PRK01297 157 ERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLD 236 (475)
T ss_pred ccccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccc
Confidence 4689999999999999999888764 67778887653 23578999999999999888888899
Q ss_pred CccEEEEeccCCCCCccchhHHHHHHHHcCc--cceEEEecccCCCh-HHHHHHHhhhcCCcEEEEccCC--CCcCceEE
Q 039491 505 DIEWVIFDEVHYVNDIERGVVWEEVIIMLPR--HINIVLLSATVPNT-VEFADWIGRTKQKKIRVTGTTK--RPVPLEHC 579 (1379)
Q Consensus 505 ~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~--~vqiIlLSATvpN~-~efa~wl~~~~~~~i~vi~t~~--RpvpLe~~ 579 (1379)
++++|||||||.+.+.++...+..++..++. ..|++++|||+++. .+++.++. ..+..+..... ....++++
T Consensus 237 ~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~ 313 (475)
T PRK01297 237 MVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWT---TDPAIVEIEPENVASDTVEQH 313 (475)
T ss_pred cCceEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhc---cCCEEEEeccCcCCCCcccEE
Confidence 9999999999999988888888888888864 57999999998754 34444332 22322211110 00011111
Q ss_pred EeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCC
Q 039491 580 LYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGS 659 (1379)
Q Consensus 580 l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~ 659 (1379)
++...
T Consensus 314 ~~~~~--------------------------------------------------------------------------- 318 (475)
T PRK01297 314 VYAVA--------------------------------------------------------------------------- 318 (475)
T ss_pred EEEec---------------------------------------------------------------------------
Confidence 11000
Q ss_pred CCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchh
Q 039491 660 QNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQ 739 (1379)
Q Consensus 660 ~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpq 739 (1379)
.......+...+......++||||++++.|+.++..|...++.
T Consensus 319 ---------~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~---------------------------- 361 (475)
T PRK01297 319 ---------GSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGIN---------------------------- 361 (475)
T ss_pred ---------chhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCC----------------------------
Confidence 0111223334444555578999999999999999988664432
Q ss_pred HHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHH
Q 039491 740 IVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQM 819 (1379)
Q Consensus 740 i~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQm 819 (1379)
+..+||+|++.+|..++..|++|.++|||||+++++|||+|++++||+ ||. |.+..+|+||
T Consensus 362 -----------~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~----~~~----P~s~~~y~Qr 422 (475)
T PRK01297 362 -----------AAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN----FTL----PEDPDDYVHR 422 (475)
T ss_pred -----------EEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEE----eCC----CCCHHHHHHh
Confidence 567999999999999999999999999999999999999999999999 998 9999999999
Q ss_pred hcccCCCCCCCcEEEEEEecCC
Q 039491 820 AGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 820 aGRAGRrG~d~~G~vIil~~~~ 841 (1379)
+|||||+|.+ |.+|++..++
T Consensus 423 ~GRaGR~g~~--g~~i~~~~~~ 442 (475)
T PRK01297 423 IGRTGRAGAS--GVSISFAGED 442 (475)
T ss_pred hCccCCCCCC--ceEEEEecHH
Confidence 9999999976 8889888654
No 25
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=4.4e-41 Score=428.91 Aligned_cols=342 Identities=21% Similarity=0.233 Sum_probs=256.6
Q ss_pred CChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc--CCcEEEecchHH
Q 039491 378 STEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH--CTRAVYTAPIKT 454 (1379)
Q Consensus 378 ~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~--~~raIylsPtka 454 (1379)
+.+.+.+.+.+ .+|+ |+++|.+||+.+.+|+|++++||||||||++|.+|++..+.+ +.++||++||||
T Consensus 21 l~~~l~~~L~~--------~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~Ptra 92 (742)
T TIGR03817 21 AHPDVVAALEA--------AGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKA 92 (742)
T ss_pred CCHHHHHHHHH--------cCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHH
Confidence 34567777766 6787 999999999999999999999999999999999999988843 578999999999
Q ss_pred HHHHHHHHHhccc----cEEEEecCccc------CCCCceeeecHHHHHHHHhcC----cccCCCccEEEEeccCCCCCc
Q 039491 455 ISNQKYRDFSGKF----DVGLLTGDVSL------RPEASCLIMTTEILRSMLYRG----ADIIRDIEWVIFDEVHYVNDI 520 (1379)
Q Consensus 455 LsnQk~~~~~~~f----~VglltGdv~i------n~~a~IlV~TpEiL~smL~~~----~~~l~~v~lVI~DEaH~l~d~ 520 (1379)
|++|+++.+++.. +++.++||... ...++|+|+||++|...+... ...++++++||+||||.+.+
T Consensus 93 La~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g- 171 (742)
T TIGR03817 93 LAADQLRAVRELTLRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG- 171 (742)
T ss_pred HHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-
Confidence 9999999998763 78889998763 345899999999987533221 23478999999999999976
Q ss_pred cchhHHHHHHHHc-------CccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCc
Q 039491 521 ERGVVWEEVIIML-------PRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENE 593 (1379)
Q Consensus 521 ~rG~v~eeii~~L-------p~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~ 593 (1379)
.+|..+..++..+ +.+.|+|++|||++|..++++++.. .++.++..+..|....++.+....+......
T Consensus 172 ~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g---~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~- 247 (742)
T TIGR03817 172 VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIG---APVVAVTEDGSPRGARTVALWEPPLTELTGE- 247 (742)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcC---CCeEEECCCCCCcCceEEEEecCCccccccc-
Confidence 4787766665443 5678999999999999998887653 4566665555554433322211100000000
Q ss_pred ccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHH
Q 039491 594 AFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIW 673 (1379)
Q Consensus 594 ~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1379)
.+ . ..++......
T Consensus 248 ------------------------------------~~--------------------------~-----~~r~~~~~~~ 260 (742)
T TIGR03817 248 ------------------------------------NG--------------------------A-----PVRRSASAEA 260 (742)
T ss_pred ------------------------------------cc--------------------------c-----ccccchHHHH
Confidence 00 0 0000011112
Q ss_pred HHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEE
Q 039491 674 LTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAI 753 (1379)
Q Consensus 674 ~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIav 753 (1379)
..++..+... ..++||||+|++.|+.++..|...-.. ....+..+|..
T Consensus 261 ~~~l~~l~~~-~~~~IVF~~sr~~ae~l~~~l~~~l~~-------------------------------~~~~l~~~v~~ 308 (742)
T TIGR03817 261 ADLLADLVAE-GARTLTFVRSRRGAELVAAIARRLLGE-------------------------------VDPDLAERVAA 308 (742)
T ss_pred HHHHHHHHHC-CCCEEEEcCCHHHHHHHHHHHHHHHHh-------------------------------hccccccchhh
Confidence 2333333333 479999999999999999987541000 00112345788
Q ss_pred ecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEE
Q 039491 754 HHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGT 833 (1379)
Q Consensus 754 hHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~ 833 (1379)
|||||++.+|+.++..|++|.+++||||+++++|||+|++++||+ ||. |.+..+|+||+|||||+|.+ |.
T Consensus 309 ~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~----~~~----P~s~~~y~qRiGRaGR~G~~--g~ 378 (742)
T TIGR03817 309 YRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVI----AGF----PGTRASLWQQAGRAGRRGQG--AL 378 (742)
T ss_pred eecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEE----eCC----CCCHHHHHHhccccCCCCCC--cE
Confidence 999999999999999999999999999999999999999999999 998 99999999999999999976 89
Q ss_pred EEEEecCC
Q 039491 834 VVVLCRDE 841 (1379)
Q Consensus 834 vIil~~~~ 841 (1379)
+|+++.++
T Consensus 379 ai~v~~~~ 386 (742)
T TIGR03817 379 VVLVARDD 386 (742)
T ss_pred EEEEeCCC
Confidence 99888654
No 26
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-41 Score=382.10 Aligned_cols=340 Identities=22% Similarity=0.284 Sum_probs=279.6
Q ss_pred cccccccCCC--hHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHH-hc---
Q 039491 370 KEAWVVSGST--EAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALAT-KH--- 442 (1379)
Q Consensus 370 ~~~w~~~~~~--~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l-~~--- 442 (1379)
...|..+..+ +++...+.+ .+|+ .+|.|..+|+.++++++|+|-|+||||||++|.+|++..+ ++
T Consensus 3 ~~~~~~l~~~L~~~l~~~l~~--------~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~ 74 (567)
T KOG0345|consen 3 PKSFSSLAPPLSPWLLEALDE--------SGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAK 74 (567)
T ss_pred CcchhhcCCCccHHHHHHHHh--------cCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccC
Confidence 3568877655 888888887 8899 9999999999999999999999999999999999999988 21
Q ss_pred ---C-CcEEEecchHHHHHHHHHHHhccc------cEEEEecCcccC--------CCCceeeecHHHHHHHHhcCcccC-
Q 039491 443 ---C-TRAVYTAPIKTISNQKYRDFSGKF------DVGLLTGDVSLR--------PEASCLIMTTEILRSMLYRGADII- 503 (1379)
Q Consensus 443 ---~-~raIylsPtkaLsnQk~~~~~~~f------~VglltGdv~in--------~~a~IlV~TpEiL~smL~~~~~~l- 503 (1379)
+ .-++|++|||+||.|++....... ++-+++|+.++. ..++|+|+||++|..|+.+....+
T Consensus 75 ~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~ 154 (567)
T KOG0345|consen 75 TPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLS 154 (567)
T ss_pred CCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhcc
Confidence 1 258999999999999987665533 688899987753 347899999999999999865555
Q ss_pred -CCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCC--cC--ceE
Q 039491 504 -RDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRP--VP--LEH 578 (1379)
Q Consensus 504 -~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~Rp--vp--Le~ 578 (1379)
+.++++|+||||+++|.++...++.++..||+..++=++|||.....+ +......++++.|....+.. .| |..
T Consensus 155 ~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~--dL~raGLRNpv~V~V~~k~~~~tPS~L~~ 232 (567)
T KOG0345|consen 155 FRSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVE--DLARAGLRNPVRVSVKEKSKSATPSSLAL 232 (567)
T ss_pred ccccceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHH--HHHHhhccCceeeeecccccccCchhhcc
Confidence 499999999999999999999999999999999999999999766543 55555567777776655443 33 433
Q ss_pred EEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCC
Q 039491 579 CLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGG 658 (1379)
Q Consensus 579 ~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~ 658 (1379)
++. ++.
T Consensus 233 ~Y~-------v~~------------------------------------------------------------------- 238 (567)
T KOG0345|consen 233 EYL-------VCE------------------------------------------------------------------- 238 (567)
T ss_pred eee-------Eec-------------------------------------------------------------------
Confidence 222 111
Q ss_pred CCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCch
Q 039491 659 SQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLP 738 (1379)
Q Consensus 659 ~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lp 738 (1379)
...+...++..|......++|||.+|+..++.....+..+.
T Consensus 239 ----------a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l----------------------------- 279 (567)
T KOG0345|consen 239 ----------ADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLL----------------------------- 279 (567)
T ss_pred ----------HHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHh-----------------------------
Confidence 13345677888888888999999999999999888876531
Q ss_pred hHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHH
Q 039491 739 QIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQ 818 (1379)
Q Consensus 739 qi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQ 818 (1379)
..+.|-..||.|.+..|..+++.|++..-.|||||+++|+|||+|++++|++ ||+ |.++..|+|
T Consensus 280 --------~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ----~Dp----P~~~~~FvH 343 (567)
T KOG0345|consen 280 --------KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ----FDP----PKDPSSFVH 343 (567)
T ss_pred --------CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEe----cCC----CCChhHHHh
Confidence 2234677999999999999999999988889999999999999999999999 999 999999999
Q ss_pred HhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHHh
Q 039491 819 MAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIV 853 (1379)
Q Consensus 819 maGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li~ 853 (1379)
|+||+||.|.. |.+|++..+. +..+-.++.
T Consensus 344 R~GRTaR~gr~--G~Aivfl~p~---E~aYveFl~ 373 (567)
T KOG0345|consen 344 RCGRTARAGRE--GNAIVFLNPR---EEAYVEFLR 373 (567)
T ss_pred hcchhhhccCc--cceEEEeccc---HHHHHHHHH
Confidence 99999999976 9999998764 244444444
No 27
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.4e-42 Score=367.49 Aligned_cols=332 Identities=20% Similarity=0.260 Sum_probs=272.8
Q ss_pred ccccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh---c
Q 039491 367 QQQKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK---H 442 (1379)
Q Consensus 367 ~~~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~---~ 442 (1379)
.....+|.+|++.++++..++. |+|+ |+.+|++||+++++|++|+++|..|+|||..|-+.+++.+. +
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~--------yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r 94 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYA--------YGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVR 94 (400)
T ss_pred cccccchhhcCchHHHHHHHHH--------hccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccc
Confidence 3456789999999999999998 9999 99999999999999999999999999999988778877774 4
Q ss_pred CCcEEEecchHHHHHHHHHHHhccc-----cEEEEecCcccC-------CCCceeeecHHHHHHHHhcCcccCCCccEEE
Q 039491 443 CTRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSLR-------PEASCLIMTTEILRSMLYRGADIIRDIEWVI 510 (1379)
Q Consensus 443 ~~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~in-------~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI 510 (1379)
.+++++++|||+|+.|..+.+.... .+-.+.|+.++. ...+++.+||+++.+|+.++....+.+.++|
T Consensus 95 ~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlV 174 (400)
T KOG0328|consen 95 ETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLV 174 (400)
T ss_pred eeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEE
Confidence 5789999999999999999988876 455677777643 3468999999999999999998999999999
Q ss_pred EeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCc---eEEEeecCcee
Q 039491 511 FDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPL---EHCLYYSGEFY 587 (1379)
Q Consensus 511 ~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpL---e~~l~~~~~l~ 587 (1379)
+||++.|.+.+++..+..+...||+.+|++++|||+|.. +.+-.......|+.+..... ..++ .+|+.
T Consensus 175 LDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~e--ilemt~kfmtdpvrilvkrd-eltlEgIKqf~v------ 245 (400)
T KOG0328|consen 175 LDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHE--ILEMTEKFMTDPVRILVKRD-ELTLEGIKQFFV------ 245 (400)
T ss_pred eccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHH--HHHHHHHhcCCceeEEEecC-CCchhhhhhhee------
Confidence 999999999999999999999999999999999999864 33333334445554433211 1111 12221
Q ss_pred eeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCccccc
Q 039491 588 KVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRR 667 (1379)
Q Consensus 588 ~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~ 667 (1379)
-++++
T Consensus 246 -~ve~E-------------------------------------------------------------------------- 250 (400)
T KOG0328|consen 246 -AVEKE-------------------------------------------------------------------------- 250 (400)
T ss_pred -eechh--------------------------------------------------------------------------
Confidence 11111
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhh
Q 039491 668 SEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLL 747 (1379)
Q Consensus 668 ~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL 747 (1379)
.-+...|......-.-.+++|||+|++.++.+.+.++..+++..
T Consensus 251 --ewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVs---------------------------------- 294 (400)
T KOG0328|consen 251 --EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVS---------------------------------- 294 (400)
T ss_pred --hhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceee----------------------------------
Confidence 11122333333333446899999999999999999988777644
Q ss_pred ccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCC
Q 039491 748 RRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRG 827 (1379)
Q Consensus 748 ~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG 827 (1379)
..||+|.+++|+.+...|++|..+||++|+++|+|+|+|.+++||+ ||. |.+...|+||+||.||.|
T Consensus 295 -----smHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviN----YDL----P~nre~YIHRIGRSGRFG 361 (400)
T KOG0328|consen 295 -----SMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN----YDL----PNNRELYIHRIGRSGRFG 361 (400)
T ss_pred -----eccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEe----cCC----CccHHHHhhhhccccccC
Confidence 4899999999999999999999999999999999999999999999 999 888899999999999999
Q ss_pred CCCcEEEEEEecCC
Q 039491 828 LDKIGTVVVLCRDE 841 (1379)
Q Consensus 828 ~d~~G~vIil~~~~ 841 (1379)
+. |++|-|+.++
T Consensus 362 Rk--GvainFVk~~ 373 (400)
T KOG0328|consen 362 RK--GVAINFVKSD 373 (400)
T ss_pred Cc--ceEEEEecHH
Confidence 86 9999999765
No 28
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.9e-41 Score=414.84 Aligned_cols=410 Identities=26% Similarity=0.352 Sum_probs=309.2
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCC-CcEEEEcCCCccHHHHHHHHHHHHHhcC---
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENG-DSVFVAAHTSAGKTVVAEYAFALATKHC--- 443 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g-~sVlV~ApTGSGKTlvae~aI~~~l~~~--- 443 (1379)
..+-|....++.+-..+|.. .+ |..+|.......+.+ .|+++|||||+|||.+|.+-|++.+.++
T Consensus 287 ~Ekl~~iselP~Wnq~aF~g----------~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~ 356 (1674)
T KOG0951|consen 287 EEKLVKISELPKWNQPAFFG----------KQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLRE 356 (1674)
T ss_pred cceeEeecCCcchhhhhccc----------chhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhccccc
Confidence 33445555554444444433 33 899999999887655 6999999999999999999999988542
Q ss_pred --------CcEEEecchHHHHHHHHHHHhccc-----cEEEEecCcccCC----CCceeeecHHHHHHHHhcCc--ccCC
Q 039491 444 --------TRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSLRP----EASCLIMTTEILRSMLYRGA--DIIR 504 (1379)
Q Consensus 444 --------~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~in~----~a~IlV~TpEiL~smL~~~~--~~l~ 504 (1379)
.+++|++|.|||+..+...|.+.+ .|+-+|||.+... ++.++|+|||...-.-.++. ...+
T Consensus 357 dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~q 436 (1674)
T KOG0951|consen 357 DGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQ 436 (1674)
T ss_pred ccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHH
Confidence 489999999999999999998876 7888999988543 57999999999855444432 2345
Q ss_pred CccEEEEeccCCCCCccchhHHHHHHHHc-------CccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCce
Q 039491 505 DIEWVIFDEVHYVNDIERGVVWEEVIIML-------PRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLE 577 (1379)
Q Consensus 505 ~v~lVI~DEaH~l~d~~rG~v~eeii~~L-------p~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe 577 (1379)
-++++|+||+|.+.| +||++.|.+.... ..++++++||||+||..+++.+++... ..++.+...+||+||.
T Consensus 437 lvrLlIIDEIHLLhD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~-~glf~fd~syRpvPL~ 514 (1674)
T KOG0951|consen 437 LVRLLIIDEIHLLHD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDP-EGLFYFDSSYRPVPLK 514 (1674)
T ss_pred HHHHHhhhhhhhccc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCc-ccccccCcccCcCCcc
Confidence 688999999999987 7999999887543 247899999999999999999998766 6788888999999997
Q ss_pred EEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCC
Q 039491 578 HCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSG 657 (1379)
Q Consensus 578 ~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~ 657 (1379)
+.++-.. .++.+. .+..
T Consensus 515 qq~Igi~------ek~~~~--~~qa------------------------------------------------------- 531 (1674)
T KOG0951|consen 515 QQYIGIT------EKKPLK--RFQA------------------------------------------------------- 531 (1674)
T ss_pred ceEeccc------cCCchH--HHHH-------------------------------------------------------
Confidence 6543211 111100 0000
Q ss_pred CCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHh---hhccCCC
Q 039491 658 GSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAF---SRLKGSD 734 (1379)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~---~~L~~ed 734 (1379)
.......+++ ...+..++|||+.||+++-+.|..++... -++..+..|..+.- .-|+.++
T Consensus 532 ----------mNe~~yeKVm---~~agk~qVLVFVHsRkET~ktA~aIRd~~----le~dtls~fmre~s~s~eilrtea 594 (1674)
T KOG0951|consen 532 ----------MNEACYEKVL---EHAGKNQVLVFVHSRKETAKTARAIRDKA----LEEDTLSRFMREDSASREILRTEA 594 (1674)
T ss_pred ----------HHHHHHHHHH---HhCCCCcEEEEEEechHHHHHHHHHHHHH----hhhhHHHHHHhcccchhhhhhhhh
Confidence 0111222333 33445799999999999999999998632 23444555553321 1121111
Q ss_pred CCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcc--cccCC
Q 039491 735 RNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGRE--FRQLL 812 (1379)
Q Consensus 735 r~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~--~rpls 812 (1379)
. ......++++|.+|+|+||+||...+|+.+|.+|+.|.++|||+|.|+|+|||+|+.+|||.++..||... .++++
T Consensus 595 ~-~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~els 673 (1674)
T KOG0951|consen 595 G-QAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELS 673 (1674)
T ss_pred h-cccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCC
Confidence 1 11225689999999999999999999999999999999999999999999999999999999999999863 55689
Q ss_pred HHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHHhcCCCcccccccccHHHHHHHH
Q 039491 813 PGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQFRLTYIMILHLL 874 (1379)
Q Consensus 813 ~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li~g~~~~L~S~f~lty~miLnLl 874 (1379)
|.+.+||.|||||.+.|..|..|+..+.. +......++. +..|++|||.-...--||.-
T Consensus 674 p~dv~qmlgragrp~~D~~gegiiit~~s--e~qyyls~mn-~qLpiesq~~~rl~d~lnae 732 (1674)
T KOG0951|consen 674 PLDVMQMLGRAGRPQYDTCGEGIIITDHS--ELQYYLSLMN-QQLPIESQFVSRLADCLNAE 732 (1674)
T ss_pred HHHHHHHHhhcCCCccCcCCceeeccCch--HhhhhHHhhh-hcCCChHHHHHHhhhhhhhh
Confidence 99999999999999999999999987653 3445555554 66789999876665555554
No 29
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=4.7e-40 Score=426.97 Aligned_cols=343 Identities=22% Similarity=0.295 Sum_probs=249.0
Q ss_pred CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh---------cCCcEEEecchHHHHHHHHHHHhc------
Q 039491 401 LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK---------HCTRAVYTAPIKTISNQKYRDFSG------ 465 (1379)
Q Consensus 401 L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~---------~~~raIylsPtkaLsnQk~~~~~~------ 465 (1379)
|+|+|++|++.+.+|+|++++||||||||++|.++++..+. .+.++||++|+|||++|+++.+.+
T Consensus 33 ~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~ 112 (876)
T PRK13767 33 FTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIR 112 (876)
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887662 245799999999999999886542
Q ss_pred --------cc---cEEEEecCccc-------CCCCceeeecHHHHHHHHhcCc--ccCCCccEEEEeccCCCCCccchhH
Q 039491 466 --------KF---DVGLLTGDVSL-------RPEASCLIMTTEILRSMLYRGA--DIIRDIEWVIFDEVHYVNDIERGVV 525 (1379)
Q Consensus 466 --------~f---~VglltGdv~i-------n~~a~IlV~TpEiL~smL~~~~--~~l~~v~lVI~DEaH~l~d~~rG~v 525 (1379)
.+ .+++.+||.+. ...++|+|+|||.|..++.+.. ..++++++|||||||.+.+..||..
T Consensus 113 ~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~ 192 (876)
T PRK13767 113 EIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVH 192 (876)
T ss_pred HHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHH
Confidence 11 57889999863 2357899999999988876542 3578999999999999999899988
Q ss_pred HHHHHHHc----CccceEEEecccCCChHHHHHHHhhhc----CCcEEEEccCC-CCcCceEEEeecCceeeeccCcccc
Q 039491 526 WEEVIIML----PRHINIVLLSATVPNTVEFADWIGRTK----QKKIRVTGTTK-RPVPLEHCLYYSGEFYKVCENEAFI 596 (1379)
Q Consensus 526 ~eeii~~L----p~~vqiIlLSATvpN~~efa~wl~~~~----~~~i~vi~t~~-RpvpLe~~l~~~~~l~~i~d~~~f~ 596 (1379)
++.++..+ +...|+|+||||++|..+++.|+.... ..++.++.... ++.++... .+...+ ..
T Consensus 193 l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~-~p~~~l---~~----- 263 (876)
T PRK13767 193 LSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVI-SPVDDL---IH----- 263 (876)
T ss_pred HHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEe-ccCccc---cc-----
Confidence 77665443 367899999999999999999997532 12233322211 11111100 000000 00
Q ss_pred hhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHH
Q 039491 597 PQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTL 676 (1379)
Q Consensus 597 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 676 (1379)
. . . ..........+
T Consensus 264 -----------------------------------------------------~-----~-------~-~~~~~~l~~~L 277 (876)
T PRK13767 264 -----------------------------------------------------T-----P-------A-EEISEALYETL 277 (876)
T ss_pred -----------------------------------------------------c-----c-------c-chhHHHHHHHH
Confidence 0 0 0 00001112222
Q ss_pred HHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecC
Q 039491 677 INKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHA 756 (1379)
Q Consensus 677 i~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHg 756 (1379)
...+.. ..++||||+|++.|+.++..|...... .....+|++|||
T Consensus 278 ~~~i~~--~~~~LVF~nTr~~ae~la~~L~~~~~~---------------------------------~~~~~~i~~hHg 322 (876)
T PRK13767 278 HELIKE--HRTTLIFTNTRSGAERVLYNLRKRFPE---------------------------------EYDEDNIGAHHS 322 (876)
T ss_pred HHHHhc--CCCEEEEeCCHHHHHHHHHHHHHhchh---------------------------------hccccceeeeeC
Confidence 333322 468999999999999999998652100 012357999999
Q ss_pred CCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCC-CCcEEEE
Q 039491 757 GLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGL-DKIGTVV 835 (1379)
Q Consensus 757 gL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~-d~~G~vI 835 (1379)
+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |+. |.+..+|+||+|||||++. ...|.+|
T Consensus 323 ~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~----~~~----P~sv~~ylQRiGRaGR~~g~~~~g~ii 394 (876)
T PRK13767 323 SLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL----LGS----PKSVSRLLQRIGRAGHRLGEVSKGRII 394 (876)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE----eCC----CCCHHHHHHhcccCCCCCCCCCcEEEE
Confidence 999999999999999999999999999999999999999999 888 8999999999999999854 4567777
Q ss_pred EEecCCCCCHH-HHHHHHhcCCCcccc
Q 039491 836 VLCRDEIPGES-DLKHIIVGSATRLES 861 (1379)
Q Consensus 836 il~~~~~~~~~-~l~~li~g~~~~L~S 861 (1379)
.....+..+.. ..+.+..+..+++..
T Consensus 395 ~~~~~~l~e~~~~~~~~~~~~ie~~~~ 421 (876)
T PRK13767 395 VVDRDDLVECAVLLKKAREGKIDRVHI 421 (876)
T ss_pred EcCchhHHHHHHHHHHHHhCCCCCCCC
Confidence 65433321111 234556666665443
No 30
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=9.6e-40 Score=400.32 Aligned_cols=320 Identities=18% Similarity=0.256 Sum_probs=242.3
Q ss_pred hccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEE
Q 039491 394 ALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGL 471 (1379)
Q Consensus 394 a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~Vgl 471 (1379)
...|+|+ |+|+|++||+++++|++++++||||+|||++|.+|++. .+..+||++|+++|+.|+++.+.... .+..
T Consensus 4 ~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~---~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~ 80 (470)
T TIGR00614 4 KTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC---SDGITLVISPLISLMEDQVLQLKASGIPATF 80 (470)
T ss_pred HhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH---cCCcEEEEecHHHHHHHHHHHHHHcCCcEEE
Confidence 3458998 99999999999999999999999999999999988764 46789999999999999999999876 8888
Q ss_pred EecCccc-----------CCCCceeeecHHHHHHHH--hcCcccCCCccEEEEeccCCCCCccch--hHHHH---HHHHc
Q 039491 472 LTGDVSL-----------RPEASCLIMTTEILRSML--YRGADIIRDIEWVIFDEVHYVNDIERG--VVWEE---VIIML 533 (1379)
Q Consensus 472 ltGdv~i-----------n~~a~IlV~TpEiL~smL--~~~~~~l~~v~lVI~DEaH~l~d~~rG--~v~ee---ii~~L 533 (1379)
++|+... +...+++++|||.+.... ...-....++++|||||||++.+++.. ..+.. +...+
T Consensus 81 l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~ 160 (470)
T TIGR00614 81 LNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKF 160 (470)
T ss_pred EeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHc
Confidence 8887653 245789999999874321 111114678999999999999987532 22222 22333
Q ss_pred CccceEEEecccCCChH--HHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhc
Q 039491 534 PRHINIVLLSATVPNTV--EFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKN 611 (1379)
Q Consensus 534 p~~vqiIlLSATvpN~~--efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~ 611 (1379)
+.+++++||||+++.. ++..+++.. .+..+..+..||. +. + .+...
T Consensus 161 -~~~~~l~lTAT~~~~~~~di~~~l~l~--~~~~~~~s~~r~n-l~-~--------~v~~~------------------- 208 (470)
T TIGR00614 161 -PNVPIMALTATASPSVREDILRQLNLK--NPQIFCTSFDRPN-LY-Y--------EVRRK------------------- 208 (470)
T ss_pred -CCCceEEEecCCCHHHHHHHHHHcCCC--CCcEEeCCCCCCC-cE-E--------EEEeC-------------------
Confidence 4689999999988763 556665532 2222222222221 10 0 00000
Q ss_pred cccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHH-hCCCCCEEE
Q 039491 612 LSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLS-KKSLLPVVI 690 (1379)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~-~~~~~pvIV 690 (1379)
....+..++..+. ......+||
T Consensus 209 ---------------------------------------------------------~~~~~~~l~~~l~~~~~~~~~II 231 (470)
T TIGR00614 209 ---------------------------------------------------------TPKILEDLLRFIRKEFKGKSGII 231 (470)
T ss_pred ---------------------------------------------------------CccHHHHHHHHHHHhcCCCceEE
Confidence 0012334455554 334456799
Q ss_pred EeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHh
Q 039491 691 FCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLF 770 (1379)
Q Consensus 691 Fv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF 770 (1379)
||+|++.|+.++..|...++. ++.+||+|++.+|+.+++.|
T Consensus 232 F~~s~~~~e~la~~L~~~g~~---------------------------------------~~~~H~~l~~~eR~~i~~~F 272 (470)
T TIGR00614 232 YCPSRKKSEQVTASLQNLGIA---------------------------------------AGAYHAGLEISARDDVHHKF 272 (470)
T ss_pred EECcHHHHHHHHHHHHhcCCC---------------------------------------eeEeeCCCCHHHHHHHHHHH
Confidence 999999999999999875543 56799999999999999999
Q ss_pred cCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHH
Q 039491 771 CRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKH 850 (1379)
Q Consensus 771 ~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~ 850 (1379)
++|.++|||||++++||||+|++++||+ |+. |.+..+|+||+|||||.|.. |.+++++.+. +...++.
T Consensus 273 ~~g~~~vLVaT~~~~~GID~p~V~~VI~----~~~----P~s~~~y~Qr~GRaGR~G~~--~~~~~~~~~~--d~~~~~~ 340 (470)
T TIGR00614 273 QRDEIQVVVATVAFGMGINKPDVRFVIH----YSL----PKSMESYYQESGRAGRDGLP--SECHLFYAPA--DINRLRR 340 (470)
T ss_pred HcCCCcEEEEechhhccCCcccceEEEE----eCC----CCCHHHHHhhhcCcCCCCCC--ceEEEEechh--HHHHHHH
Confidence 9999999999999999999999999999 998 99999999999999999976 8999988765 5677788
Q ss_pred HHhcCC
Q 039491 851 IIVGSA 856 (1379)
Q Consensus 851 li~g~~ 856 (1379)
++....
T Consensus 341 ~~~~~~ 346 (470)
T TIGR00614 341 LLMEEP 346 (470)
T ss_pred HHhcCC
Confidence 876544
No 31
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=5.4e-40 Score=377.66 Aligned_cols=343 Identities=21% Similarity=0.247 Sum_probs=283.8
Q ss_pred cccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHH------
Q 039491 368 QQKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALAT------ 440 (1379)
Q Consensus 368 ~~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l------ 440 (1379)
.+-..|++.+.+.++++.+.+ -+|. |+|+|.+||+..++++++|..|.||||||.+|.++++-.+
T Consensus 242 nplrnwEE~~~P~e~l~~I~~--------~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~ 313 (673)
T KOG0333|consen 242 NPLRNWEESGFPLELLSVIKK--------PGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPM 313 (673)
T ss_pred ccccChhhcCCCHHHHHHHHh--------cCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCc
Confidence 356789999999888887766 5666 9999999999999999999999999999999999988766
Q ss_pred ------hcCCcEEEecchHHHHHHHHHHHhccc-----cEEEEecCccc-------CCCCceeeecHHHHHHHHhcCccc
Q 039491 441 ------KHCTRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSL-------RPEASCLIMTTEILRSMLYRGADI 502 (1379)
Q Consensus 441 ------~~~~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~i-------n~~a~IlV~TpEiL~smL~~~~~~ 502 (1379)
..|+.+++++||++|+.|++.+-.+.. ++--+.|+.++ ...+.|+|+||++|.+.|.+....
T Consensus 314 ~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lv 393 (673)
T KOG0333|consen 314 ARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLV 393 (673)
T ss_pred chhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHH
Confidence 237899999999999999988776654 45555666554 456899999999999999888888
Q ss_pred CCCccEEEEeccCCCCCccchhHHHHHHHHcCc-------------------------cceEEEecccCCChHHHHHHHh
Q 039491 503 IRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPR-------------------------HINIVLLSATVPNTVEFADWIG 557 (1379)
Q Consensus 503 l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~-------------------------~vqiIlLSATvpN~~efa~wl~ 557 (1379)
+.+..+||+|||+.|.|.++...+..++..+|. ..|.++||||+|.+.+ ....
T Consensus 394 l~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~ve--rlar 471 (673)
T KOG0333|consen 394 LNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVE--RLAR 471 (673)
T ss_pred hccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHH--HHHH
Confidence 999999999999999999999999999887752 1689999999998764 4444
Q ss_pred hhcCCcEEEE-ccCCCCcCc-eEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCccccccc
Q 039491 558 RTKQKKIRVT-GTTKRPVPL-EHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQ 635 (1379)
Q Consensus 558 ~~~~~~i~vi-~t~~RpvpL-e~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1379)
...++|++|. .+..+|+|+ ++.++...
T Consensus 472 ~ylr~pv~vtig~~gk~~~rveQ~v~m~~--------------------------------------------------- 500 (673)
T KOG0333|consen 472 SYLRRPVVVTIGSAGKPTPRVEQKVEMVS--------------------------------------------------- 500 (673)
T ss_pred HHhhCCeEEEeccCCCCccchheEEEEec---------------------------------------------------
Confidence 5556777764 455777775 33322111
Q ss_pred ccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchh
Q 039491 636 KREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSE 715 (1379)
Q Consensus 636 ~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~e 715 (1379)
....+..|+..+..+...|+|||+++++.|+.+|+.|.+.++.+
T Consensus 501 ---------------------------------ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~--- 544 (673)
T KOG0333|consen 501 ---------------------------------EDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKV--- 544 (673)
T ss_pred ---------------------------------chHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceE---
Confidence 23346778888888878899999999999999999999877654
Q ss_pred hhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceE
Q 039491 716 KSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTV 795 (1379)
Q Consensus 716 k~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tv 795 (1379)
..+|||-++++|+.++..|++|...|||||+++++|||+|++++
T Consensus 545 ------------------------------------~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSl 588 (673)
T KOG0333|consen 545 ------------------------------------TTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSL 588 (673)
T ss_pred ------------------------------------EEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccce
Confidence 45999999999999999999999999999999999999999999
Q ss_pred EEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCC-HHHHHHHHh
Q 039491 796 VFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPG-ESDLKHIIV 853 (1379)
Q Consensus 796 VI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~-~~~l~~li~ 853 (1379)
||+ ||. ..+..+|+||+||+||+|.. |++|.|++....+ -.+++.++.
T Consensus 589 Vin----ydm----aksieDYtHRIGRTgRAGk~--GtaiSflt~~dt~v~ydLkq~l~ 637 (673)
T KOG0333|consen 589 VIN----YDM----AKSIEDYTHRIGRTGRAGKS--GTAISFLTPADTAVFYDLKQALR 637 (673)
T ss_pred eee----cch----hhhHHHHHHHhccccccccC--ceeEEEeccchhHHHHHHHHHHH
Confidence 999 999 88999999999999999975 9999999875311 124555544
No 32
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=7.4e-40 Score=376.38 Aligned_cols=334 Identities=22% Similarity=0.264 Sum_probs=272.1
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHH-------
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALAT------- 440 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l------- 440 (1379)
....|.+..+++...+++.+ .+|+ ++++|+..|+.++.|++++++|-||+|||++|++++.+.+
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~--------~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~ 151 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKE--------MGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP 151 (543)
T ss_pred hhhHhhccccCHHHHHHHHh--------cCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC
Confidence 45567788888888888887 8999 9999999999999999999999999999999999988877
Q ss_pred hcCCcEEEecchHHHHHHHHHHHhccc------cEEEEecCccc-------CCCCceeeecHHHHHHHHhcCc-ccCCCc
Q 039491 441 KHCTRAVYTAPIKTISNQKYRDFSGKF------DVGLLTGDVSL-------RPEASCLIMTTEILRSMLYRGA-DIIRDI 506 (1379)
Q Consensus 441 ~~~~raIylsPtkaLsnQk~~~~~~~f------~VglltGdv~i-------n~~a~IlV~TpEiL~smL~~~~-~~l~~v 506 (1379)
+++..+|+++|||+||.|++.+.++.. .|+++.|+... ...++|+|+||++|.++|.+.. ...+++
T Consensus 152 r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~ 231 (543)
T KOG0342|consen 152 RNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNL 231 (543)
T ss_pred CCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhcc
Confidence 457899999999999999999998865 68999998874 3468999999999999998844 567888
Q ss_pred cEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChH-HHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCc
Q 039491 507 EWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTV-EFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGE 585 (1379)
Q Consensus 507 ~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~-efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~ 585 (1379)
+++|+||||++.|.+|...++.++..+|...|.+++|||++... +++.-.- +..+.++-..+....+-..-+ .+
T Consensus 232 k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L--~~d~~~v~~~d~~~~~The~l---~Q 306 (543)
T KOG0342|consen 232 KCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGAL--KRDPVFVNVDDGGERETHERL---EQ 306 (543)
T ss_pred ceeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhh--cCCceEeecCCCCCcchhhcc---cc
Confidence 99999999999999999999999999999999999999998765 3333221 123344332222111100000 01
Q ss_pred eeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCccc
Q 039491 586 FYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGL 665 (1379)
Q Consensus 586 l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~ 665 (1379)
.|.++.
T Consensus 307 gyvv~~-------------------------------------------------------------------------- 312 (543)
T KOG0342|consen 307 GYVVAP-------------------------------------------------------------------------- 312 (543)
T ss_pred eEEecc--------------------------------------------------------------------------
Confidence 111110
Q ss_pred ccchhHHHHHHHHHHHhCCC-CCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHH
Q 039491 666 RRSEVSIWLTLINKLSKKSL-LPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQ 744 (1379)
Q Consensus 666 ~~~~~~~~~~Li~~L~~~~~-~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~ 744 (1379)
....+..+..+|+++.. .++||||.|......++..|..++++.-.
T Consensus 313 ---~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~e------------------------------ 359 (543)
T KOG0342|consen 313 ---SDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLE------------------------------ 359 (543)
T ss_pred ---ccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhh------------------------------
Confidence 11124556666666655 89999999999999999999987776543
Q ss_pred HhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccC
Q 039491 745 SLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAG 824 (1379)
Q Consensus 745 ~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAG 824 (1379)
+||++++..|..+...|++..--|||||++.|||+|+|+++.|+. ||+ |-++.+|+||+||+|
T Consensus 360 ---------iHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ----~~~----P~d~~~YIHRvGRTa 422 (543)
T KOG0342|consen 360 ---------IHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQ----YDP----PSDPEQYIHRVGRTA 422 (543)
T ss_pred ---------hhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEE----eCC----CCCHHHHHHHhcccc
Confidence 899999999999999999999999999999999999999999999 999 999999999999999
Q ss_pred CCCCCCcEEEEEEecCC
Q 039491 825 RRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 825 RrG~d~~G~vIil~~~~ 841 (1379)
|.|.. |.++++..++
T Consensus 423 R~gk~--G~alL~l~p~ 437 (543)
T KOG0342|consen 423 REGKE--GKALLLLAPW 437 (543)
T ss_pred ccCCC--ceEEEEeChh
Confidence 98865 8888888654
No 33
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=1.8e-39 Score=391.98 Aligned_cols=456 Identities=28% Similarity=0.431 Sum_probs=309.3
Q ss_pred CCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc--CCcEEEecchHHHHHHHHHHHhccc-------
Q 039491 397 FPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH--CTRAVYTAPIKTISNQKYRDFSGKF------- 467 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~--~~raIylsPtkaLsnQk~~~~~~~f------- 467 (1379)
.+|.|+.||.+.+....++++++|+|||+||||++..|+|-..++. ..-+||++|+|||.||...++..+|
T Consensus 508 ~dF~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~r 587 (1330)
T KOG0949|consen 508 HDFCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLR 587 (1330)
T ss_pred hccCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCcccc
Confidence 4699999999999999999999999999999999999999998854 5779999999999999888777776
Q ss_pred ---cEEEEecCcccCC-CCceeeecHHHHHHHHhc---CcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEE
Q 039491 468 ---DVGLLTGDVSLRP-EASCLIMTTEILRSMLYR---GADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIV 540 (1379)
Q Consensus 468 ---~VglltGdv~in~-~a~IlV~TpEiL~smL~~---~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiI 540 (1379)
-.|.+|-+.++|+ +++|+|+-||.+.++|.. ...+..++++|||||||+++..+-|..||+++.+.| +.++
T Consensus 588 g~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~--CP~L 665 (1330)
T KOG0949|consen 588 GVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP--CPFL 665 (1330)
T ss_pred chhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcC--CCee
Confidence 2456777888886 589999999999999977 345788999999999999999999999999998887 6899
Q ss_pred EecccCCChHHHHHHHh---hhcCCcEEEEccCCCCcCceEEEeecC---ceeee-c-------------------c-Cc
Q 039491 541 LLSATVPNTVEFADWIG---RTKQKKIRVTGTTKRPVPLEHCLYYSG---EFYKV-C-------------------E-NE 593 (1379)
Q Consensus 541 lLSATvpN~~efa~wl~---~~~~~~i~vi~t~~RpvpLe~~l~~~~---~l~~i-~-------------------d-~~ 593 (1379)
+||||+.|...|..|+. +.+..+++.+....|-..+.-+++... +.+.+ . + ..
T Consensus 666 ~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~l~v~n~~~e~n~~yl~~~falgerai~~~~~~~~~s~dd~ 745 (1330)
T KOG0949|consen 666 VLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELGLVVYNRMNEGNAYYLLKLFALGERAIIVSLRELSESEDDN 745 (1330)
T ss_pred EEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhcceeeccCCCCcchHHHHHHhhchhhccchhhccccCCCCc
Confidence 99999999999999998 334557777776666554444443221 00000 0 0 00
Q ss_pred c---cchh---hHHHHHHHHHhhccccccCCCC--CCCCCCCCccc-c-cccccCCCCC-CC--------CCC-cccccc
Q 039491 594 A---FIPQ---GWKAAKDAYKRKNLSAASGATG--SYAGASSPRDG-A-RAQKREHPNR-GK--------QNK-HSVVGI 653 (1379)
Q Consensus 594 ~---f~~~---~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~-~-~~~~~~~~~~-gr--------~~~-~~~~~~ 653 (1379)
. |.+. -+.+....+.+ .....-.... .........+- . .-..+..... .. +.+ ..+.
T Consensus 746 ~~lafe~~~~l~~~k~~kl~~k-~~p~~~fe~~~~~~k~~~e~~r~~~~l~~~f~e~s~~q~kik~~~ki~~k~Vnkq-- 822 (1330)
T KOG0949|consen 746 VVLAFEPLSCLTLRKLNKLLIK-ITPENFFESNIVTKKEVGEYGRHLLELFQGFIEDSLTQKQIKYVYKLQTKEVNKQ-- 822 (1330)
T ss_pred eEeeccchhHHHHHHHHHHHhh-cCHHHhhhhhhheechHHHHHHHHHHHHHHhhhcChHHHHHHHHHHhhhhhhhhH--
Confidence 0 0000 00111111110 0000000000 00000000000 0 0000000000 00 000 0000
Q ss_pred ccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhc----CCCCCchhhhHHHH--------
Q 039491 654 KNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSG----IDLTSSSEKSEIRV-------- 721 (1379)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~----~~l~~~~ek~~i~~-------- 721 (1379)
-+... .-......+.+..++..|+.++..|+|+|.--+..|+.+|..+.+ .... ..+.+...
T Consensus 823 le~~~----~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcekla~kv~~~Le~~e~E--e~k~k~m~k~kk~~~~ 896 (1330)
T KOG0949|consen 823 LESVV----DYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEKLALKVHRQLESMEME--EKKDKLMEKMKKEAKR 896 (1330)
T ss_pred hhhcc----cCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHH
Confidence 00000 000111233477888889999999999999999999998876532 1111 11111111
Q ss_pred ----------HHHHHhhh-----ccCCC---------CCch---------------hHHHHHHhhccceEEecCCCChHH
Q 039491 722 ----------FCDKAFSR-----LKGSD---------RNLP---------------QIVRVQSLLRRGIAIHHAGLLPIV 762 (1379)
Q Consensus 722 ----------~~~~~~~~-----L~~ed---------r~lp---------------qi~~l~~lL~rGIavhHggL~~~~ 762 (1379)
+..++++. +++.+ +..+ ....+..++-||||+||+||....
T Consensus 897 a~~r~Kt~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~~~~~~g~~~~~~id~lyRGiG~HHaglNr~y 976 (1330)
T KOG0949|consen 897 ARDREKTKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEEETKFIGNTDFEFIDMLYRGIGVHHAGLNRKY 976 (1330)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhhhccccCCCcHHHHHHHHhcccccccccchHH
Confidence 11111110 01100 0000 114577899999999999999999
Q ss_pred HHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCC
Q 039491 763 KEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEI 842 (1379)
Q Consensus 763 Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~ 842 (1379)
|..||.+|+.|...|||||+|++.|||||.+||||.+..- .++|..|.||+|||||||.|..|+|++|- +
T Consensus 977 R~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsL-------QL~plny~QmaGRAGRRGFD~lGnV~Fmg---i 1046 (1330)
T KOG0949|consen 977 RSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSL-------QLDPLNYKQMAGRAGRRGFDTLGNVVFMG---I 1046 (1330)
T ss_pred HHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEecccc-------ccCchhHHhhhccccccccccccceEEEe---C
Confidence 9999999999999999999999999999999999884331 67899999999999999999999999986 3
Q ss_pred CCHHHHHHHHhcCCCcccccccccHHHHHHHH
Q 039491 843 PGESDLKHIIVGSATRLESQFRLTYIMILHLL 874 (1379)
Q Consensus 843 ~~~~~l~~li~g~~~~L~S~f~lty~miLnLl 874 (1379)
....+.+++......++.++.+|-..+|.|-
T Consensus 1047 -P~~kv~rLlts~L~diqG~~p~T~~~~l~l~ 1077 (1330)
T KOG0949|consen 1047 -PRQKVQRLLTSLLPDIQGAYPYTNTSFLGLD 1077 (1330)
T ss_pred -cHHHHHHHHHHhhhcccCCCcchhhHHHHHH
Confidence 4588999999999999999999988888775
No 34
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-40 Score=360.53 Aligned_cols=354 Identities=21% Similarity=0.247 Sum_probs=283.6
Q ss_pred hhhhhhhccCCCCCcccCCCCCCccccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEc
Q 039491 344 SVLDEILSVKSGGTTSILDDGGGQQQKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAA 422 (1379)
Q Consensus 344 ~~~d~~l~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~A 422 (1379)
+++..-+.-.....+....+.. ...+.+|++..+...++..+.+ .+|+ |+|+|.++|+..+.|+++++-|
T Consensus 59 ~dwk~~l~lpp~d~R~~t~DVt-~TkG~efEd~~Lkr~LLmgIfe--------~G~ekPSPiQeesIPiaLtGrdiLaRa 129 (459)
T KOG0326|consen 59 KDWKATLKLPPKDTRYKTEDVT-ATKGNEFEDYCLKRELLMGIFE--------KGFEKPSPIQEESIPIALTGRDILARA 129 (459)
T ss_pred hhhHHhccCCCCCccccccccc-cccCccHHHhhhhHHHHHHHHH--------hccCCCCCccccccceeecchhhhhhc
Confidence 3445544443333333333333 5578899999999999999988 7898 9999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHHh---cCCcEEEecchHHHHHHHHHHHhccc-----cEEEEecCcccCC-------CCceeee
Q 039491 423 HTSAGKTVVAEYAFALATK---HCTRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSLRP-------EASCLIM 487 (1379)
Q Consensus 423 pTGSGKTlvae~aI~~~l~---~~~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~in~-------~a~IlV~ 487 (1379)
..|+|||.+|.+|++..+. ..-++++++||++||-|..+..++.. .|...||+.++.. ..+++|+
T Consensus 130 KNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vg 209 (459)
T KOG0326|consen 130 KNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVG 209 (459)
T ss_pred cCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEc
Confidence 9999999999999999884 35689999999999999877666544 6777899988644 4799999
Q ss_pred cHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEE
Q 039491 488 TTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVT 567 (1379)
Q Consensus 488 TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi 567 (1379)
||+++.++..++-..+++...+|+|||+.+.+.+++..++.++..||+..|++++|||.|.+.. +++.+...+|..+-
T Consensus 210 TPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk--~Fm~~~l~kPy~IN 287 (459)
T KOG0326|consen 210 TPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVK--GFMDRHLKKPYEIN 287 (459)
T ss_pred CChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHH--HHHHHhccCcceee
Confidence 9999999999998899999999999999999999999999999999999999999999998764 56666555543321
Q ss_pred c-cCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCC
Q 039491 568 G-TTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQN 646 (1379)
Q Consensus 568 ~-t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~ 646 (1379)
- .+-.+.-+.+|+. .++
T Consensus 288 LM~eLtl~GvtQyYa-------fV~------------------------------------------------------- 305 (459)
T KOG0326|consen 288 LMEELTLKGVTQYYA-------FVE------------------------------------------------------- 305 (459)
T ss_pred hhhhhhhcchhhhee-------eec-------------------------------------------------------
Confidence 1 1111222222221 111
Q ss_pred CccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHH
Q 039491 647 KHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKA 726 (1379)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~ 726 (1379)
+..++.-|-..+.+-...+.||||+|.+++|-+|+.+.++|+.+-
T Consensus 306 ----------------------e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscy------------- 350 (459)
T KOG0326|consen 306 ----------------------ERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCY------------- 350 (459)
T ss_pred ----------------------hhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhh-------------
Confidence 111222222222333346899999999999999999999887653
Q ss_pred hhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCc
Q 039491 727 FSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGR 806 (1379)
Q Consensus 727 ~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~ 806 (1379)
+.|+.|.+..|.+|+..|++|..+.||||+.|.+|||+++++|||+ ||.
T Consensus 351 --------------------------yiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN----FDf- 399 (459)
T KOG0326|consen 351 --------------------------YIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN----FDF- 399 (459)
T ss_pred --------------------------HHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe----cCC-
Confidence 5899999999999999999999999999999999999999999999 999
Q ss_pred ccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCC
Q 039491 807 EFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 807 ~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~ 841 (1379)
|.++..|+||+||+||.|. .|.+|-+.+-+
T Consensus 400 ---pk~aEtYLHRIGRsGRFGh--lGlAInLitye 429 (459)
T KOG0326|consen 400 ---PKNAETYLHRIGRSGRFGH--LGLAINLITYE 429 (459)
T ss_pred ---CCCHHHHHHHccCCccCCC--cceEEEEEehh
Confidence 9999999999999999996 49998887643
No 35
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-39 Score=374.60 Aligned_cols=332 Identities=18% Similarity=0.194 Sum_probs=277.2
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh------
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK------ 441 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~------ 441 (1379)
....|+++.++....+.+.+ -.|. ++.+|+++|+..+.|++|+.+|.||||||++|++|++.++-
T Consensus 67 ~~~kF~dlpls~~t~kgLke--------~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~ 138 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKE--------AKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSP 138 (758)
T ss_pred hhhhHHhCCCchHHHHhHhh--------cCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCC
Confidence 34579999999999999988 5676 99999999999999999999999999999999999999882
Q ss_pred -cCCcEEEecchHHHHHHHHHHHhccc-----cEEEEecCcccC------CCCceeeecHHHHHHHHhcCc-ccCCCccE
Q 039491 442 -HCTRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSLR------PEASCLIMTTEILRSMLYRGA-DIIRDIEW 508 (1379)
Q Consensus 442 -~~~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~in------~~a~IlV~TpEiL~smL~~~~-~~l~~v~l 508 (1379)
.|--+||++|||+||.|.|..+.+.. ..|++.|+.... .+.+||||||++|..++.... ....++.+
T Consensus 139 ~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQm 218 (758)
T KOG0343|consen 139 TDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQM 218 (758)
T ss_pred CCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceE
Confidence 46679999999999999999998865 789999988753 257999999999999887643 45678999
Q ss_pred EEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEcc----CCCCcCceEEEeecC
Q 039491 509 VIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGT----TKRPVPLEHCLYYSG 584 (1379)
Q Consensus 509 VI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t----~~RpvpLe~~l~~~~ 584 (1379)
+|+|||++|.|.+|...++.||..||++.|+++||||-.+.. ++.......+|.+|-.. ...|..|+++++...
T Consensus 219 LvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~sv--kdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~ 296 (758)
T KOG0343|consen 219 LVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSV--KDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVP 296 (758)
T ss_pred EEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhH--HHHHHhhcCCCcEEEEeccccccChhhhhheEEEEe
Confidence 999999999999999999999999999999999999977654 23333344566665544 233455665544321
Q ss_pred ceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcc
Q 039491 585 EFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWG 664 (1379)
Q Consensus 585 ~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~ 664 (1379)
T Consensus 297 -------------------------------------------------------------------------------- 296 (758)
T KOG0343|consen 297 -------------------------------------------------------------------------------- 296 (758)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHH
Q 039491 665 LRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQ 744 (1379)
Q Consensus 665 ~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~ 744 (1379)
...++..|..++..+-..+.|||+.|++++..++..++.+.....
T Consensus 297 ----l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~------------------------------- 341 (758)
T KOG0343|consen 297 ----LEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIP------------------------------- 341 (758)
T ss_pred ----hhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCc-------------------------------
Confidence 122344555566666677899999999999999999877533321
Q ss_pred HhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccC
Q 039491 745 SLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAG 824 (1379)
Q Consensus 745 ~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAG 824 (1379)
+..+||+|.+..|-.|...|-+..--|||||+++++|+|+|++++||. +|+ |.+...|+||+||+.
T Consensus 342 ------l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ----~DC----Pedv~tYIHRvGRtA 407 (758)
T KOG0343|consen 342 ------LLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQ----VDC----PEDVDTYIHRVGRTA 407 (758)
T ss_pred ------eeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEE----ecC----chhHHHHHHHhhhhh
Confidence 456899999999999999999999999999999999999999999999 999 999999999999999
Q ss_pred CCCCCCcEEEEEEecCC
Q 039491 825 RRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 825 RrG~d~~G~vIil~~~~ 841 (1379)
|.+.. |.++++..+.
T Consensus 408 R~~~~--G~sll~L~ps 422 (758)
T KOG0343|consen 408 RYKER--GESLLMLTPS 422 (758)
T ss_pred cccCC--CceEEEEcch
Confidence 99854 9999988765
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=9.2e-39 Score=404.39 Aligned_cols=317 Identities=19% Similarity=0.254 Sum_probs=238.1
Q ss_pred ccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEEE
Q 039491 395 LDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLL 472 (1379)
Q Consensus 395 ~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~Vgll 472 (1379)
..|+|. |+|+|++||++++.|+++||+||||+|||+||.++++.. +..+||++|+++|+.++...+.... .+..+
T Consensus 454 ~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L 530 (1195)
T PLN03137 454 KVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQDQIMNLLQANIPAASL 530 (1195)
T ss_pred HHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---CCcEEEEeCHHHHHHHHHHHHHhCCCeEEEE
Confidence 458887 999999999999999999999999999999999998653 5689999999999998888887766 77788
Q ss_pred ecCccc-------------CCCCceeeecHHHHHH---HHhc--CcccCCCccEEEEeccCCCCCcc--chhHHHHH--H
Q 039491 473 TGDVSL-------------RPEASCLIMTTEILRS---MLYR--GADIIRDIEWVIFDEVHYVNDIE--RGVVWEEV--I 530 (1379)
Q Consensus 473 tGdv~i-------------n~~a~IlV~TpEiL~s---mL~~--~~~~l~~v~lVI~DEaH~l~d~~--rG~v~eei--i 530 (1379)
+|+... ....+|||+|||+|.. ++.. .......+.+|||||||++.+|+ +...+..+ +
T Consensus 531 ~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~L 610 (1195)
T PLN03137 531 SAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGIL 610 (1195)
T ss_pred ECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHH
Confidence 887652 1457899999998742 1211 11123458999999999999885 33444443 2
Q ss_pred HHcCccceEEEecccCCChH--HHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHH
Q 039491 531 IMLPRHINIVLLSATVPNTV--EFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYK 608 (1379)
Q Consensus 531 ~~Lp~~vqiIlLSATvpN~~--efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~ 608 (1379)
....+.+++++||||.+... ++...++. ..+.....+..|| .+... ++..
T Consensus 611 r~~fp~vPilALTATAT~~V~eDI~~~L~l--~~~~vfr~Sf~Rp-NL~y~---------Vv~k---------------- 662 (1195)
T PLN03137 611 KQKFPNIPVLALTATATASVKEDVVQALGL--VNCVVFRQSFNRP-NLWYS---------VVPK---------------- 662 (1195)
T ss_pred HHhCCCCCeEEEEecCCHHHHHHHHHHcCC--CCcEEeecccCcc-ceEEE---------Eecc----------------
Confidence 23334689999999987543 56666652 1222222223333 12111 1100
Q ss_pred hhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhC-CCCC
Q 039491 609 RKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKK-SLLP 687 (1379)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~-~~~p 687 (1379)
....+..+...+... ...+
T Consensus 663 ------------------------------------------------------------~kk~le~L~~~I~~~~~~es 682 (1195)
T PLN03137 663 ------------------------------------------------------------TKKCLEDIDKFIKENHFDEC 682 (1195)
T ss_pred ------------------------------------------------------------chhHHHHHHHHHHhcccCCC
Confidence 001112333344322 2457
Q ss_pred EEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHH
Q 039491 688 VVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIE 767 (1379)
Q Consensus 688 vIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve 767 (1379)
+||||.|++.|+.++..|...++. +++|||||++.+|+.++
T Consensus 683 gIIYC~SRke~E~LAe~L~~~Gik---------------------------------------a~~YHAGLs~eeR~~vq 723 (1195)
T PLN03137 683 GIIYCLSRMDCEKVAERLQEFGHK---------------------------------------AAFYHGSMDPAQRAFVQ 723 (1195)
T ss_pred ceeEeCchhHHHHHHHHHHHCCCC---------------------------------------eeeeeCCCCHHHHHHHH
Confidence 999999999999999999876654 45799999999999999
Q ss_pred HHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHH
Q 039491 768 MLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESD 847 (1379)
Q Consensus 768 ~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~ 847 (1379)
+.|.+|.++|||||++|+||||+|++++||+ |+. |.+...|+||+|||||.|.. |.||+++... +...
T Consensus 724 e~F~~Gei~VLVATdAFGMGIDkPDVR~VIH----ydl----PkSiEsYyQriGRAGRDG~~--g~cILlys~~--D~~~ 791 (1195)
T PLN03137 724 KQWSKDEINIICATVAFGMGINKPDVRFVIH----HSL----PKSIEGYHQECGRAGRDGQR--SSCVLYYSYS--DYIR 791 (1195)
T ss_pred HHHhcCCCcEEEEechhhcCCCccCCcEEEE----cCC----CCCHHHHHhhhcccCCCCCC--ceEEEEecHH--HHHH
Confidence 9999999999999999999999999999999 999 99999999999999999976 9999998653 4566
Q ss_pred HHHHHh
Q 039491 848 LKHIIV 853 (1379)
Q Consensus 848 l~~li~ 853 (1379)
++.|+.
T Consensus 792 ~~~lI~ 797 (1195)
T PLN03137 792 VKHMIS 797 (1195)
T ss_pred HHHHHh
Confidence 777775
No 37
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-39 Score=356.61 Aligned_cols=340 Identities=17% Similarity=0.232 Sum_probs=272.1
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh---cCC
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK---HCT 444 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~---~~~ 444 (1379)
....|+.+++.+++++.+.. ++.. |+|+|+.||+.|+.|++++.+|.||||||.+|.++|+..+. .+.
T Consensus 5 t~~~F~~LGl~~Wlve~l~~--------l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~gi 76 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKA--------LGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGI 76 (442)
T ss_pred ccCchhhcCccHHHHHHHHH--------hcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcc
Confidence 45679999999999999988 4444 99999999999999999999999999999999999999995 467
Q ss_pred cEEEecchHHHHHHHHHHHhccc-----cEEEEecCcc-------cCCCCceeeecHHHHHHHHhcC----cccCCCccE
Q 039491 445 RAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVS-------LRPEASCLIMTTEILRSMLYRG----ADIIRDIEW 508 (1379)
Q Consensus 445 raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~-------in~~a~IlV~TpEiL~smL~~~----~~~l~~v~l 508 (1379)
-+++++||++|+-|+.+.|.... ++.++.|+.+ +....+++|||||+|...+... ...++++++
T Consensus 77 FalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkf 156 (442)
T KOG0340|consen 77 FALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKF 156 (442)
T ss_pred eEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceee
Confidence 89999999999999999998765 7888999876 3456799999999999888764 346789999
Q ss_pred EEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCC-cEEEEcc-CCCCcC--ce-EEEeec
Q 039491 509 VIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQK-KIRVTGT-TKRPVP--LE-HCLYYS 583 (1379)
Q Consensus 509 VI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~-~i~vi~t-~~Rpvp--Le-~~l~~~ 583 (1379)
+|+|||+.+.+..+...++-+...+|...|.++||||+.+... ...+..-.+ ..+..+. +.-+++ |. .|++..
T Consensus 157 lVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~--ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~ 234 (442)
T KOG0340|consen 157 LVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIK--QLFGCPITKSIAFELEVIDGVSTVETLYQGYILVS 234 (442)
T ss_pred EEecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHH--HhhcCCcccccceEEeccCCCCchhhhhhheeecc
Confidence 9999999999999999999999999999999999999987653 222211111 1111111 111111 11 111100
Q ss_pred CceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCc
Q 039491 584 GEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNW 663 (1379)
Q Consensus 584 ~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~ 663 (1379)
.
T Consensus 235 ~------------------------------------------------------------------------------- 235 (442)
T KOG0340|consen 235 I------------------------------------------------------------------------------- 235 (442)
T ss_pred h-------------------------------------------------------------------------------
Confidence 0
Q ss_pred ccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHH
Q 039491 664 GLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRV 743 (1379)
Q Consensus 664 ~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l 743 (1379)
.-....+.+++..........++||+++...|+.++..|..+.+.
T Consensus 236 ---~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r-------------------------------- 280 (442)
T KOG0340|consen 236 ---DVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVR-------------------------------- 280 (442)
T ss_pred ---hhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhcee--------------------------------
Confidence 001234556666666656789999999999999999999876544
Q ss_pred HHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhccc
Q 039491 744 QSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRA 823 (1379)
Q Consensus 744 ~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRA 823 (1379)
++.+||-|++.+|-..+..|+++.++||+||+++++|+|+|.+.+|++ ||. |.+|.+|+||+||+
T Consensus 281 -------~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN----~di----Pr~P~~yiHRvGRt 345 (442)
T KOG0340|consen 281 -------VVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVN----HDI----PRDPKDYIHRVGRT 345 (442)
T ss_pred -------eeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEe----cCC----CCCHHHHHHhhcch
Confidence 456999999999999999999999999999999999999999999999 999 99999999999999
Q ss_pred CCCCCCCcEEEEEEecCCCCCHHHHHHH
Q 039491 824 GRRGLDKIGTVVVLCRDEIPGESDLKHI 851 (1379)
Q Consensus 824 GRrG~d~~G~vIil~~~~~~~~~~l~~l 851 (1379)
.|+|+. |.+|.++++. +.+.+..+
T Consensus 346 ARAGR~--G~aiSivt~r--Dv~l~~ai 369 (442)
T KOG0340|consen 346 ARAGRK--GMAISIVTQR--DVELLQAI 369 (442)
T ss_pred hcccCC--cceEEEechh--hHHHHHHH
Confidence 999986 8888887753 44544444
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2e-37 Score=389.68 Aligned_cols=317 Identities=18% Similarity=0.250 Sum_probs=239.8
Q ss_pred cCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEEEe
Q 039491 396 DFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLT 473 (1379)
Q Consensus 396 ~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~Vgllt 473 (1379)
.|+|+ |+|+|++||+.+..|++++|+||||+|||++|.++++.. ...+||++|+++|+.|+.+.++... .+..+.
T Consensus 20 ~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~ 96 (607)
T PRK11057 20 TFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---DGLTLVVSPLISLMKDQVDQLLANGVAAACLN 96 (607)
T ss_pred HcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---CCCEEEEecHHHHHHHHHHHHHHcCCcEEEEc
Confidence 48998 999999999999999999999999999999998887643 5679999999999999999999877 777776
Q ss_pred cCccc-----------CCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccch--hHHH---HHHHHcCccc
Q 039491 474 GDVSL-----------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERG--VVWE---EVIIMLPRHI 537 (1379)
Q Consensus 474 Gdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG--~v~e---eii~~Lp~~v 537 (1379)
+.... ..+.+++++|||.|............++++|||||||++.++++. ..+. .+...+ +++
T Consensus 97 s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~-p~~ 175 (607)
T PRK11057 97 STQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRF-PTL 175 (607)
T ss_pred CCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhC-CCC
Confidence 65542 234689999999886321111122357899999999999987533 2222 223333 468
Q ss_pred eEEEecccCCChH--HHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccc
Q 039491 538 NIVLLSATVPNTV--EFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAA 615 (1379)
Q Consensus 538 qiIlLSATvpN~~--efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~ 615 (1379)
++++||||.++.. ++..+++. ..+...+....||. +. | .+.+
T Consensus 176 ~~v~lTAT~~~~~~~di~~~l~l--~~~~~~~~~~~r~n-l~-~--------~v~~------------------------ 219 (607)
T PRK11057 176 PFMALTATADDTTRQDIVRLLGL--NDPLIQISSFDRPN-IR-Y--------TLVE------------------------ 219 (607)
T ss_pred cEEEEecCCChhHHHHHHHHhCC--CCeEEEECCCCCCc-ce-e--------eeee------------------------
Confidence 9999999988764 44455432 12222222222221 10 0 0000
Q ss_pred cCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCCh
Q 039491 616 SGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSK 695 (1379)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Sr 695 (1379)
.......++..+......++||||+|+
T Consensus 220 -----------------------------------------------------~~~~~~~l~~~l~~~~~~~~IIFc~tr 246 (607)
T PRK11057 220 -----------------------------------------------------KFKPLDQLMRYVQEQRGKSGIIYCNSR 246 (607)
T ss_pred -----------------------------------------------------ccchHHHHHHHHHhcCCCCEEEEECcH
Confidence 001123455556666678999999999
Q ss_pred hHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCe
Q 039491 696 NHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVV 775 (1379)
Q Consensus 696 k~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~i 775 (1379)
+.|+.++..|...++. ++.+||||++.+|+.+++.|++|.+
T Consensus 247 ~~~e~la~~L~~~g~~---------------------------------------v~~~Ha~l~~~~R~~i~~~F~~g~~ 287 (607)
T PRK11057 247 AKVEDTAARLQSRGIS---------------------------------------AAAYHAGLDNDVRADVQEAFQRDDL 287 (607)
T ss_pred HHHHHHHHHHHhCCCC---------------------------------------EEEecCCCCHHHHHHHHHHHHCCCC
Confidence 9999999999875543 5679999999999999999999999
Q ss_pred eEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHHhcC
Q 039491 776 KVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGS 855 (1379)
Q Consensus 776 kVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li~g~ 855 (1379)
+|||||++++||||+|++++||+ ||. |.+..+|+||+|||||.|.+ |.+++++++. +...+++++...
T Consensus 288 ~VLVaT~a~~~GIDip~V~~VI~----~d~----P~s~~~y~Qr~GRaGR~G~~--~~~ill~~~~--d~~~~~~~~~~~ 355 (607)
T PRK11057 288 QIVVATVAFGMGINKPNVRFVVH----FDI----PRNIESYYQETGRAGRDGLP--AEAMLFYDPA--DMAWLRRCLEEK 355 (607)
T ss_pred CEEEEechhhccCCCCCcCEEEE----eCC----CCCHHHHHHHhhhccCCCCC--ceEEEEeCHH--HHHHHHHHHhcC
Confidence 99999999999999999999999 998 99999999999999999976 8899988764 456677777654
Q ss_pred C
Q 039491 856 A 856 (1379)
Q Consensus 856 ~ 856 (1379)
.
T Consensus 356 ~ 356 (607)
T PRK11057 356 P 356 (607)
T ss_pred C
Confidence 4
No 39
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2e-37 Score=407.59 Aligned_cols=384 Identities=22% Similarity=0.263 Sum_probs=252.9
Q ss_pred EEcCCCccHHHHHHHHHHHHHh-------------cCCcEEEecchHHHHHHHHHHHhc---------------cc--cE
Q 039491 420 VAAHTSAGKTVVAEYAFALATK-------------HCTRAVYTAPIKTISNQKYRDFSG---------------KF--DV 469 (1379)
Q Consensus 420 V~ApTGSGKTlvae~aI~~~l~-------------~~~raIylsPtkaLsnQk~~~~~~---------------~f--~V 469 (1379)
|+||||||||++|+++++..+. ++.++||++|+|||++|+++.++. .+ .|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 6899999999999998776652 257899999999999999998863 12 78
Q ss_pred EEEecCcccC-------CCCceeeecHHHHHHHHhcC-cccCCCccEEEEeccCCCCCccchhHHHHHH----HHcCccc
Q 039491 470 GLLTGDVSLR-------PEASCLIMTTEILRSMLYRG-ADIIRDIEWVIFDEVHYVNDIERGVVWEEVI----IMLPRHI 537 (1379)
Q Consensus 470 glltGdv~in-------~~a~IlV~TpEiL~smL~~~-~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii----~~Lp~~v 537 (1379)
+..|||++.+ ..++|||+|||.|..||.+. ...++++++||+||+|.+.+..||..++.++ ..++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999998743 35799999999999987643 3578999999999999999888998776555 3456789
Q ss_pred eEEEecccCCChHHHHHHHhhhcCCcEEEEccC-CCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhcccccc
Q 039491 538 NIVLLSATVPNTVEFADWIGRTKQKKIRVTGTT-KRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAAS 616 (1379)
Q Consensus 538 qiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~-~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~ 616 (1379)
|+|+||||++|..++++|++. ..++.++..+ .++.+++.++ +..++..+... ...
T Consensus 161 QrIgLSATI~n~eevA~~L~g--~~pv~Iv~~~~~r~~~l~v~v-p~~d~~~~~~~---------------------~~~ 216 (1490)
T PRK09751 161 QRIGLSATVRSASDVAAFLGG--DRPVTVVNPPAMRHPQIRIVV-PVANMDDVSSV---------------------ASG 216 (1490)
T ss_pred eEEEEEeeCCCHHHHHHHhcC--CCCEEEECCCCCcccceEEEE-ecCchhhcccc---------------------ccc
Confidence 999999999999999999974 2355555433 4455555332 21110000000 000
Q ss_pred CCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChh
Q 039491 617 GATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKN 696 (1379)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk 696 (1379)
. +.... .. +. . .........++..+.. ..++||||+||+
T Consensus 217 ~-------------------------~~~~~-~~----r~-------~--~i~~~v~~~il~~i~~--~~stLVFvNSR~ 255 (1490)
T PRK09751 217 T-------------------------GEDSH-AG----RE-------G--SIWPYIETGILDEVLR--HRSTIVFTNSRG 255 (1490)
T ss_pred c-------------------------ccccc-hh----hh-------h--hhhHHHHHHHHHHHhc--CCCEEEECCCHH
Confidence 0 00000 00 00 0 0001111223333332 468999999999
Q ss_pred HHHHHHHHhhcCCCCC---c-hhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcC
Q 039491 697 HCDKLADGMSGIDLTS---S-SEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCR 772 (1379)
Q Consensus 697 ~ce~lA~~L~~~~l~~---~-~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~ 772 (1379)
.|+.++..|.+..-.. . ........+ ..+.+.. . ..+...-...+.+|||+|++.+|..||+.|++
T Consensus 256 ~AE~La~~L~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~---~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~ 325 (1490)
T PRK09751 256 LAEKLTARLNELYAARLQRSPSIAVDAAHF-----ESTSGAT--S---NRVQSSDVFIARSHHGSVSKEQRAITEQALKS 325 (1490)
T ss_pred HHHHHHHHHHHhhhhhccccccccchhhhh-----hhccccc--h---hccccccceeeeeccccCCHHHHHHHHHHHHh
Confidence 9999999997632100 0 000000000 0000000 0 00000011236799999999999999999999
Q ss_pred CCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCC--C-CHHHHH
Q 039491 773 GVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEI--P-GESDLK 849 (1379)
Q Consensus 773 G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~--~-~~~~l~ 849 (1379)
|.+++||||+++++|||||++++||+ |+. |.+..+|+||+|||||+. +..+.++++..+.. . ....+.
T Consensus 326 G~LrvLVATssLELGIDIg~VDlVIq----~gs----P~sVas~LQRiGRAGR~~-gg~s~gli~p~~r~dlle~~~~ve 396 (1490)
T PRK09751 326 GELRCVVATSSLELGIDMGAVDLVIQ----VAT----PLSVASGLQRIGRAGHQV-GGVSKGLFFPRTRRDLVDSAVIVE 396 (1490)
T ss_pred CCceEEEeCcHHHccCCcccCCEEEE----eCC----CCCHHHHHHHhCCCCCCC-CCccEEEEEeCcHHHHHhhHHHHH
Confidence 99999999999999999999999999 888 999999999999999983 34566666655422 0 112356
Q ss_pred HHHhcCCCcccccccc---cHHHHHHHHhhccccHHHHHhh
Q 039491 850 HIIVGSATRLESQFRL---TYIMILHLLRVEELKVEDMLKR 887 (1379)
Q Consensus 850 ~li~g~~~~L~S~f~l---ty~miLnLlr~e~~~~e~~l~~ 887 (1379)
.++.|..+++...... -.+-|+.+...+.++++++++.
T Consensus 397 ~~l~g~iE~~~~p~nplDVLaqqiva~a~~~~~~~d~l~~~ 437 (1490)
T PRK09751 397 CMFAGRLENLTPPHNPLDVLAQQTVAAAAMDALQVDEWYSR 437 (1490)
T ss_pred HHhcCCCCccCCCCChHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 7888888776554322 1333333334456777776543
No 40
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.3e-38 Score=360.41 Aligned_cols=394 Identities=18% Similarity=0.211 Sum_probs=270.6
Q ss_pred ccccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh----
Q 039491 367 QQQKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK---- 441 (1379)
Q Consensus 367 ~~~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~---- 441 (1379)
...+..|+.+++.+++++.+.+. +.+. |+.+|++|||.+++|+++||-|+||||||++|++||.+.+.
T Consensus 132 ~fts~~f~~LGL~~~lv~~L~~~-------m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ 204 (708)
T KOG0348|consen 132 PFTSAAFASLGLHPHLVSHLNTK-------MKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEP 204 (708)
T ss_pred ccccccchhcCCCHHHHHHHHHH-------hccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCc
Confidence 44678899999999999999873 5666 99999999999999999999999999999999999999883
Q ss_pred -----cCCcEEEecchHHHHHHHHHHHhccc------cEEEEecCcc-------cCCCCceeeecHHHHHHHHhcC-ccc
Q 039491 442 -----HCTRAVYTAPIKTISNQKYRDFSGKF------DVGLLTGDVS-------LRPEASCLIMTTEILRSMLYRG-ADI 502 (1379)
Q Consensus 442 -----~~~raIylsPtkaLsnQk~~~~~~~f------~VglltGdv~-------in~~a~IlV~TpEiL~smL~~~-~~~ 502 (1379)
.|.-+++++|||+|+.|.|+.+.+.. --|.+.|+.. ++...+|||+||++|.++|.+. ...
T Consensus 205 ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~ 284 (708)
T KOG0348|consen 205 KIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIK 284 (708)
T ss_pred cccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchhe
Confidence 47789999999999999999998875 2355666655 3456899999999999999874 456
Q ss_pred CCCccEEEEeccCCCCCccchhHHHHHHHHc-------------CccceEEEecccCCChHHHHHHHhhhcCCcEEEEcc
Q 039491 503 IRDIEWVIFDEVHYVNDIERGVVWEEVIIML-------------PRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGT 569 (1379)
Q Consensus 503 l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L-------------p~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t 569 (1379)
+..+.||||||++++.|.+++..+..++..+ |...|-++||||+.+... +.-+...++++++- .
T Consensus 285 ~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~--rLa~~sLkDpv~I~-l 361 (708)
T KOG0348|consen 285 FSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVN--RLADLSLKDPVYIS-L 361 (708)
T ss_pred eeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHH--HHhhccccCceeee-c
Confidence 7889999999999999999999999988665 345788999999987652 33333445555554 1
Q ss_pred CCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCcc
Q 039491 570 TKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHS 649 (1379)
Q Consensus 570 ~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~ 649 (1379)
++....+. +..+-..-++..... +.+ + .. ..++.- .++...
T Consensus 362 d~s~~~~~----p~~~a~~ev~~~~~~--------~~l------~-~~---~iPeqL-~qry~v---------------- 402 (708)
T KOG0348|consen 362 DKSHSQLN----PKDKAVQEVDDGPAG--------DKL------D-SF---AIPEQL-LQRYTV---------------- 402 (708)
T ss_pred cchhhhcC----cchhhhhhcCCcccc--------ccc------c-cc---cCcHHh-hhceEe----------------
Confidence 11110000 000000000000000 000 0 00 000000 000000
Q ss_pred ccccccCCCCCCCcccccchhHHHH-HHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhh
Q 039491 650 VVGIKNSGGSQNNWGLRRSEVSIWL-TLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFS 728 (1379)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~-~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~ 728 (1379)
-+.....-.+. .|.+..+.....++|||+.+...++.-+..|........ |. .+
T Consensus 403 --------------VPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~-e~----------~s 457 (708)
T KOG0348|consen 403 --------------VPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHL-EG----------SS 457 (708)
T ss_pred --------------cCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhccc-cc----------cc
Confidence 00000111122 222333334445899999999999998888865322210 00 00
Q ss_pred hccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCccc
Q 039491 729 RLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREF 808 (1379)
Q Consensus 729 ~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~ 808 (1379)
-..++..+|.. .....+.-+||+|.+++|..++..|+...--||+||+++++|+|+|.+++||. ||.
T Consensus 458 -~~~~s~g~~~l-----~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ----Yd~--- 524 (708)
T KOG0348|consen 458 -GAPDSEGLPPL-----FMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ----YDP--- 524 (708)
T ss_pred -CCcccCCChhh-----hhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE----eCC---
Confidence 00011112111 11123667899999999999999999988889999999999999999999999 999
Q ss_pred ccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHHh
Q 039491 809 RQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIV 853 (1379)
Q Consensus 809 rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li~ 853 (1379)
|.++.+|+||+||+.|.|.. |.++++..+. +.++-+.+.
T Consensus 525 -P~s~adylHRvGRTARaG~k--G~alLfL~P~---Eaey~~~l~ 563 (708)
T KOG0348|consen 525 -PFSTADYLHRVGRTARAGEK--GEALLFLLPS---EAEYVNYLK 563 (708)
T ss_pred -CCCHHHHHHHhhhhhhccCC--CceEEEeccc---HHHHHHHHH
Confidence 99999999999999999975 9999888664 234555554
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=4e-37 Score=387.35 Aligned_cols=316 Identities=22% Similarity=0.274 Sum_probs=240.8
Q ss_pred ccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEEE
Q 039491 395 LDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLL 472 (1379)
Q Consensus 395 ~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~Vgll 472 (1379)
..|+|+ |+++|.+||+.+..|++++++||||+|||++|.++++. .+..++|++|+++|+.|+++.++... .+..+
T Consensus 7 ~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~---~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~ 83 (591)
T TIGR01389 7 RTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL---LKGLTVVISPLISLMKDQVDQLRAAGVAAAYL 83 (591)
T ss_pred HhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH---cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEE
Confidence 358999 99999999999999999999999999999999888764 45679999999999999999999877 88888
Q ss_pred ecCccc-----------CCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccc--hhHHHHH---HHHcCcc
Q 039491 473 TGDVSL-----------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIER--GVVWEEV---IIMLPRH 536 (1379)
Q Consensus 473 tGdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~r--G~v~eei---i~~Lp~~ 536 (1379)
+|+.+. +...+++++|||.|.+..........++++|||||||++.+++. .+.+..+ ...+| +
T Consensus 84 ~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~-~ 162 (591)
T TIGR01389 84 NSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFP-Q 162 (591)
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCC-C
Confidence 887653 23578999999998654433333456899999999999997642 2333333 23344 4
Q ss_pred ceEEEecccCCChH--HHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhcccc
Q 039491 537 INIVLLSATVPNTV--EFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSA 614 (1379)
Q Consensus 537 vqiIlLSATvpN~~--efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~ 614 (1379)
+++++||||.+... ++..|++... +..++.+..||. +... +..
T Consensus 163 ~~vi~lTAT~~~~~~~~i~~~l~~~~--~~~~~~~~~r~n-l~~~---------v~~----------------------- 207 (591)
T TIGR01389 163 VPRIALTATADAETRQDIRELLRLAD--ANEFITSFDRPN-LRFS---------VVK----------------------- 207 (591)
T ss_pred CCEEEEEeCCCHHHHHHHHHHcCCCC--CCeEecCCCCCC-cEEE---------EEe-----------------------
Confidence 56999999987553 5677776321 222222223331 1100 000
Q ss_pred ccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCC
Q 039491 615 ASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFS 694 (1379)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~S 694 (1379)
.......+...+......++||||+|
T Consensus 208 ------------------------------------------------------~~~~~~~l~~~l~~~~~~~~IIf~~s 233 (591)
T TIGR01389 208 ------------------------------------------------------KNNKQKFLLDYLKKHRGQSGIIYASS 233 (591)
T ss_pred ------------------------------------------------------CCCHHHHHHHHHHhcCCCCEEEEECc
Confidence 00112334555555556799999999
Q ss_pred hhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCC
Q 039491 695 KNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGV 774 (1379)
Q Consensus 695 rk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ 774 (1379)
++.|+.++..|...++. ++.+||||++.+|+.+++.|.+|.
T Consensus 234 r~~~e~la~~L~~~g~~---------------------------------------~~~~H~~l~~~~R~~i~~~F~~g~ 274 (591)
T TIGR01389 234 RKKVEELAERLESQGIS---------------------------------------ALAYHAGLSNKVRAENQEDFLYDD 274 (591)
T ss_pred HHHHHHHHHHHHhCCCC---------------------------------------EEEEECCCCHHHHHHHHHHHHcCC
Confidence 99999999999765433 467999999999999999999999
Q ss_pred eeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHHhc
Q 039491 775 VKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVG 854 (1379)
Q Consensus 775 ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li~g 854 (1379)
++|||||++++||||+|++++||+ |+. |.+...|+||+|||||.|.. |.++++++.+ +...++.++..
T Consensus 275 ~~vlVaT~a~~~GID~p~v~~VI~----~~~----p~s~~~y~Q~~GRaGR~G~~--~~~il~~~~~--d~~~~~~~i~~ 342 (591)
T TIGR01389 275 VKVMVATNAFGMGIDKPNVRFVIH----YDM----PGNLESYYQEAGRAGRDGLP--AEAILLYSPA--DIALLKRRIEQ 342 (591)
T ss_pred CcEEEEechhhccCcCCCCCEEEE----cCC----CCCHHHHhhhhccccCCCCC--ceEEEecCHH--HHHHHHHHHhc
Confidence 999999999999999999999999 998 89999999999999999965 7888887654 44556666653
No 42
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.6e-37 Score=340.39 Aligned_cols=342 Identities=18% Similarity=0.207 Sum_probs=264.5
Q ss_pred CCCccccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHC--CCcEEEEcCCCccHHHHHHHHHHHHH
Q 039491 364 GGGQQQKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLEN--GDSVFVAAHTSAGKTVVAEYAFALAT 440 (1379)
Q Consensus 364 ~~~~~~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~--g~sVlV~ApTGSGKTlvae~aI~~~l 440 (1379)
.+|..+.++|.++.+.+++++.++. +.|+ |+.+|..|+|.++. .+|.+.+++.|+|||.+|.++++...
T Consensus 83 nsPlyS~ksFeeL~LkPellkgly~--------M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrv 154 (477)
T KOG0332|consen 83 NSPLYSAKSFEELRLKPELLKGLYA--------MKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRV 154 (477)
T ss_pred CCCccccccHHhhCCCHHHHhHHHH--------hccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhc
Confidence 4567788999999999999999997 7888 99999999999865 47999999999999999999998877
Q ss_pred h---cCCcEEEecchHHHHHHHHHHHhccc-----cEEEEecCcccCC----CCceeeecHHHHHHHHhc-CcccCCCcc
Q 039491 441 K---HCTRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSLRP----EASCLIMTTEILRSMLYR-GADIIRDIE 507 (1379)
Q Consensus 441 ~---~~~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~in~----~a~IlV~TpEiL~smL~~-~~~~l~~v~ 507 (1379)
. ..+.+++++|+++|+.|..+.+.+.. ......-|..... .++|+|+||+.+.+++.+ ....+..+.
T Consensus 155 d~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kik 234 (477)
T KOG0332|consen 155 DPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIK 234 (477)
T ss_pred CccccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhce
Confidence 4 35789999999999999999999876 1222222222111 268999999999998877 556788999
Q ss_pred EEEEeccCCCCCc-cchhHHHHHHHHcCccceEEEecccCCChH-HHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCc
Q 039491 508 WVIFDEVHYVNDI-ERGVVWEEVIIMLPRHINIVLLSATVPNTV-EFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGE 585 (1379)
Q Consensus 508 lVI~DEaH~l~d~-~rG~v~eeii~~Lp~~vqiIlLSATvpN~~-efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~ 585 (1379)
.+|+|||+.|.+. +++..--.+..++|+..|++++|||..... .|+.-+-.. .+.+.+-.....--++. +
T Consensus 235 vfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn-~n~i~Lk~eel~L~~Ik-------Q 306 (477)
T KOG0332|consen 235 VFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPN-ANVIILKREELALDNIK-------Q 306 (477)
T ss_pred EEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCC-Cceeeeehhhccccchh-------h
Confidence 9999999988764 355566667788999999999999987654 455443321 11222222222222232 2
Q ss_pred eeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCccc
Q 039491 586 FYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGL 665 (1379)
Q Consensus 586 l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~ 665 (1379)
+|..+..
T Consensus 307 lyv~C~~------------------------------------------------------------------------- 313 (477)
T KOG0332|consen 307 LYVLCAC------------------------------------------------------------------------- 313 (477)
T ss_pred heeeccc-------------------------------------------------------------------------
Confidence 3333220
Q ss_pred ccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHH
Q 039491 666 RRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQS 745 (1379)
Q Consensus 666 ~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~ 745 (1379)
...++..|++...-..-++.||||.+++.+..++..|...|..
T Consensus 314 ---~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~---------------------------------- 356 (477)
T KOG0332|consen 314 ---RDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQ---------------------------------- 356 (477)
T ss_pred ---hhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCce----------------------------------
Confidence 2334455555444445679999999999999999999876543
Q ss_pred hhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCccc--ccCCHHHHHHHhccc
Q 039491 746 LLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREF--RQLLPGEYTQMAGRA 823 (1379)
Q Consensus 746 lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~--rpls~~eyiQmaGRA 823 (1379)
|.++||.|.-.+|..+.+.|++|..||||+|+++|||||++.+++|++ ||.+-. -..++..|+||+||+
T Consensus 357 -----V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN----ydlP~~~~~~pD~etYlHRiGRt 427 (477)
T KOG0332|consen 357 -----VSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVN----YDLPVKYTGEPDYETYLHRIGRT 427 (477)
T ss_pred -----eEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEe----cCCccccCCCCCHHHHHHHhccc
Confidence 678999999999999999999999999999999999999999999999 776210 024789999999999
Q ss_pred CCCCCCCcEEEEEEecCCC
Q 039491 824 GRRGLDKIGTVVVLCRDEI 842 (1379)
Q Consensus 824 GRrG~d~~G~vIil~~~~~ 842 (1379)
||.|+. |.+|-+++++.
T Consensus 428 GRFGkk--G~a~n~v~~~~ 444 (477)
T KOG0332|consen 428 GRFGKK--GLAINLVDDKD 444 (477)
T ss_pred cccccc--ceEEEeecccC
Confidence 999975 99999998764
No 43
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-37 Score=356.10 Aligned_cols=421 Identities=16% Similarity=0.196 Sum_probs=297.9
Q ss_pred ccccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCC-CcEEEEcCCCccHHHHHHHHHHHHH----
Q 039491 367 QQQKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENG-DSVFVAAHTSAGKTVVAEYAFALAT---- 440 (1379)
Q Consensus 367 ~~~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g-~sVlV~ApTGSGKTlvae~aI~~~l---- 440 (1379)
...-+.|.++.++..++.++.. .+|. |+++|...++.+..| .+|+.+|.||||||++|-+||...+
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~--------~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s 248 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSN--------LGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESS 248 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHh--------cCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhcc
Confidence 4467789999999999999988 7898 999999999999988 7999999999999999999998843
Q ss_pred ----------hcCCc--EEEecchHHHHHHHHHHHhccc-----cEEEEecCcc-------cCCCCceeeecHHHHHHHH
Q 039491 441 ----------KHCTR--AVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVS-------LRPEASCLIMTTEILRSML 496 (1379)
Q Consensus 441 ----------~~~~r--aIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~-------in~~a~IlV~TpEiL~smL 496 (1379)
..+.+ +++++|||+|+.|+...|.... .+..++|+.. ++...+|+|+||++|+.++
T Consensus 249 ~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli 328 (731)
T KOG0347|consen 249 DDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELI 328 (731)
T ss_pred chHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHH
Confidence 23445 9999999999999988887654 7888999987 4556899999999999999
Q ss_pred hcCcc---cCCCccEEEEeccCCCCCccchhHHHHHHHHcC-----ccceEEEecccCCChHHHHHHHhhhcCCcEEEEc
Q 039491 497 YRGAD---IIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLP-----RHINIVLLSATVPNTVEFADWIGRTKQKKIRVTG 568 (1379)
Q Consensus 497 ~~~~~---~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp-----~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~ 568 (1379)
..+.. .++++.++|+||+++|.+.+....+..++.+|. ...|.+.+|||+.-... .-+...+++...
T Consensus 329 ~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~--~~~~~~~k~~~k--- 403 (731)
T KOG0347|consen 329 EEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQ--QPLSSSRKKKDK--- 403 (731)
T ss_pred HhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhc--ChhHHhhhccch---
Confidence 87643 567899999999999999888788888888875 35799999999753321 111111110000
Q ss_pred cCCCCcCceEEEeecC--ceeeecc-CcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCC
Q 039491 569 TTKRPVPLEHCLYYSG--EFYKVCE-NEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQ 645 (1379)
Q Consensus 569 t~~RpvpLe~~l~~~~--~l~~i~d-~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~ 645 (1379)
......++++.+-..+ +--+++| ... -..+ ..+......
T Consensus 404 ~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q-----~~ta-~~l~Es~I~-------------------------------- 445 (731)
T KOG0347|consen 404 EDELNAKIQHLMKKIGFRGKPKIIDLTPQ-----SATA-STLTESLIE-------------------------------- 445 (731)
T ss_pred hhhhhHHHHHHHHHhCccCCCeeEecCcc-----hhHH-HHHHHHhhc--------------------------------
Confidence 0000111111110000 0001111 000 0000 000000000
Q ss_pred CCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHH
Q 039491 646 NKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDK 725 (1379)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~ 725 (1379)
. .....-..|..+|... .+.+||||+|...+..++-.|..+++..-.
T Consensus 446 -----------C----------~~~eKD~ylyYfl~ry-PGrTlVF~NsId~vKRLt~~L~~L~i~p~~----------- 492 (731)
T KOG0347|consen 446 -----------C----------PPLEKDLYLYYFLTRY-PGRTLVFCNSIDCVKRLTVLLNNLDIPPLP----------- 492 (731)
T ss_pred -----------C----------CccccceeEEEEEeec-CCceEEEechHHHHHHHHHHHhhcCCCCch-----------
Confidence 0 0000001112222222 478999999999999999999998877542
Q ss_pred HhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCC
Q 039491 726 AFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDG 805 (1379)
Q Consensus 726 ~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg 805 (1379)
+|+.|.+.+|-..++.|++..--||+||+++|+|+|||.+.+||| |..
T Consensus 493 ----------------------------LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH----YqV 540 (731)
T KOG0347|consen 493 ----------------------------LHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIH----YQV 540 (731)
T ss_pred ----------------------------hhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEE----eec
Confidence 899999999999999999999999999999999999999999999 888
Q ss_pred cccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHHh----cCCCcccccccccHHHHHHHHhhccccH
Q 039491 806 REFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIV----GSATRLESQFRLTYIMILHLLRVEELKV 881 (1379)
Q Consensus 806 ~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li~----g~~~~L~S~f~lty~miLnLlr~e~~~~ 881 (1379)
|.+..-|+||+||+.|++.+ |..+++|.+. +...++++-. ....++ |.+ ..-+++.++-..--+
T Consensus 541 ----PrtseiYVHRSGRTARA~~~--Gvsvml~~P~--e~~~~~KL~ktL~k~~dlpi---fPv-~~~~m~~lkeRvrLA 608 (731)
T KOG0347|consen 541 ----PRTSEIYVHRSGRTARANSE--GVSVMLCGPQ--EVGPLKKLCKTLKKKEDLPI---FPV-ETDIMDALKERVRLA 608 (731)
T ss_pred ----CCccceeEecccccccccCC--CeEEEEeChH--HhHHHHHHHHHHhhccCCCc---eec-cHHHHHHHHHHHHHH
Confidence 99999999999999999976 9999999875 4455555433 223333 444 444566653211124
Q ss_pred HHHHhhChhhHHhcCCcHHHHHHHHHHHcCCCCcc
Q 039491 882 EDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTI 916 (1379)
Q Consensus 882 e~~l~~SF~e~~~~~~~~~~~~~l~~~l~~~~~~i 916 (1379)
.++-+..|..+.....-..+++.. +++.-.++.-
T Consensus 609 ~ei~~~e~k~~~v~~~~sWlkkaA-~el~id~d~d 642 (731)
T KOG0347|consen 609 REIDKLEIKSKRVRKEESWLKKAA-DELGIDVDED 642 (731)
T ss_pred HHHHHhhhhhhhhhhhHHHHHHHH-HHhCCccccc
Confidence 566677778888888888888888 7776655443
No 44
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.2e-36 Score=377.33 Aligned_cols=312 Identities=23% Similarity=0.317 Sum_probs=243.3
Q ss_pred CC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc--------CCcEEEecchHHHHHHHHHHHhccc--
Q 039491 399 FE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH--------CTRAVYTAPIKTISNQKYRDFSGKF-- 467 (1379)
Q Consensus 399 Fe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~--------~~raIylsPtkaLsnQk~~~~~~~f-- 467 (1379)
|. |++.|++||+.+.+|+|++|+||||||||.+|.+|++..+-. +..+||++|.|||.|...+++....
T Consensus 20 ~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~ 99 (814)
T COG1201 20 FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRE 99 (814)
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHH
Confidence 45 999999999999999999999999999999999998887722 3679999999999999999887654
Q ss_pred ---cEEEEecCccc-------CCCCceeeecHHHHHHHHhcC--cccCCCccEEEEeccCCCCCccchhHHHHHHHHcC-
Q 039491 468 ---DVGLLTGDVSL-------RPEASCLIMTTEILRSMLYRG--ADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLP- 534 (1379)
Q Consensus 468 ---~VglltGdv~i-------n~~a~IlV~TpEiL~smL~~~--~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp- 534 (1379)
.|.+-|||+.- ....+|||+|||.|.-+|... ...+.++.+||+||+|-+.+..||..+.-.+..|.
T Consensus 100 ~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~ 179 (814)
T COG1201 100 LGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRE 179 (814)
T ss_pred cCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHh
Confidence 78899999973 234799999999998888653 35789999999999999999999998765554432
Q ss_pred --ccceEEEecccCCChHHHHHHHhhhcCCcEEEEccC-CCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhc
Q 039491 535 --RHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTT-KRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKN 611 (1379)
Q Consensus 535 --~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~-~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~ 611 (1379)
...|.|+||||+.+..+.++|+..... ++.++... .++. ++-+.... ......
T Consensus 180 l~~~~qRIGLSATV~~~~~varfL~g~~~-~~~Iv~~~~~k~~--~i~v~~p~------~~~~~~--------------- 235 (814)
T COG1201 180 LAGDFQRIGLSATVGPPEEVAKFLVGFGD-PCEIVDVSAAKKL--EIKVISPV------EDLIYD--------------- 235 (814)
T ss_pred hCcccEEEeehhccCCHHHHHHHhcCCCC-ceEEEEcccCCcc--eEEEEecC------Cccccc---------------
Confidence 278999999999999999999986532 45544332 1211 11111100 000000
Q ss_pred cccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEE
Q 039491 612 LSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIF 691 (1379)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVF 691 (1379)
..........+..+.+.. ..++||
T Consensus 236 -------------------------------------------------------~~~~~~~~~~i~~~v~~~-~ttLIF 259 (814)
T COG1201 236 -------------------------------------------------------EELWAALYERIAELVKKH-RTTLIF 259 (814)
T ss_pred -------------------------------------------------------cchhHHHHHHHHHHHhhc-CcEEEE
Confidence 001122233333333333 499999
Q ss_pred eCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhc
Q 039491 692 CFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFC 771 (1379)
Q Consensus 692 v~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~ 771 (1379)
+|||..+|.++..|.+.+. ..|++|||+|+..+|..+|+.|+
T Consensus 260 ~NTR~~aE~l~~~L~~~~~--------------------------------------~~i~~HHgSlSre~R~~vE~~lk 301 (814)
T COG1201 260 TNTRSGAERLAFRLKKLGP--------------------------------------DIIEVHHGSLSRELRLEVEERLK 301 (814)
T ss_pred EeChHHHHHHHHHHHHhcC--------------------------------------CceeeecccccHHHHHHHHHHHh
Confidence 9999999999999977432 24889999999999999999999
Q ss_pred CCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCC-CcEEEEE
Q 039491 772 RGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLD-KIGTVVV 836 (1379)
Q Consensus 772 ~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d-~~G~vIi 836 (1379)
+|.++++|||++++.|||+-+++.||+ |.. |.+.+.++||+||+|++-.. .+|.+|.
T Consensus 302 ~G~lravV~TSSLELGIDiG~vdlVIq----~~S----P~sV~r~lQRiGRsgHr~~~~Skg~ii~ 359 (814)
T COG1201 302 EGELKAVVATSSLELGIDIGDIDLVIQ----LGS----PKSVNRFLQRIGRAGHRLGEVSKGIIIA 359 (814)
T ss_pred cCCceEEEEccchhhccccCCceEEEE----eCC----cHHHHHHhHhccccccccCCcccEEEEe
Confidence 999999999999999999999999999 887 99999999999999987543 4454444
No 45
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-36 Score=356.57 Aligned_cols=327 Identities=20% Similarity=0.264 Sum_probs=253.4
Q ss_pred cccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc--------
Q 039491 372 AWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH-------- 442 (1379)
Q Consensus 372 ~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~-------- 442 (1379)
.|++..+...+..+... -+|. |+|+|+-+|+.+..|+++++||+||||||.+|+++|...+..
T Consensus 75 ~f~~~~l~~~l~~ni~~--------~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~ 146 (482)
T KOG0335|consen 75 TFDEAILGEALAGNIKR--------SGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGE 146 (482)
T ss_pred cccccchhHHHhhcccc--------ccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcc
Confidence 56555555554444333 5666 999999999999999999999999999999999999887732
Q ss_pred -----CCcEEEecchHHHHHHHHHHHhccc-----cEEEEecCccc-------CCCCceeeecHHHHHHHHhcCcccCCC
Q 039491 443 -----CTRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSL-------RPEASCLIMTTEILRSMLYRGADIIRD 505 (1379)
Q Consensus 443 -----~~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~i-------n~~a~IlV~TpEiL~smL~~~~~~l~~ 505 (1379)
.+++++++||++|+.|.|.+.++.. ++....|+.++ ....+|+|+||++|.+++.++...+.+
T Consensus 147 ~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~ 226 (482)
T KOG0335|consen 147 SGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDN 226 (482)
T ss_pred cCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhh
Confidence 3789999999999999999998865 56677777553 345899999999999999999999999
Q ss_pred ccEEEEeccCCCCC-ccchhHHHHHHHHcC----ccceEEEecccCCChH-HHHHHHhhhcCCcEEE--EccCCCCcCce
Q 039491 506 IEWVIFDEVHYVND-IERGVVWEEVIIMLP----RHINIVLLSATVPNTV-EFADWIGRTKQKKIRV--TGTTKRPVPLE 577 (1379)
Q Consensus 506 v~lVI~DEaH~l~d-~~rG~v~eeii~~Lp----~~vqiIlLSATvpN~~-efa~wl~~~~~~~i~v--i~t~~RpvpLe 577 (1379)
++++|+|||++|+| .+|++.++.++..+. ...|.++||||.|... ..+..+-. ...+.+ ......+..+.
T Consensus 227 ~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~--~~yi~laV~rvg~~~~ni~ 304 (482)
T KOG0335|consen 227 CKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLK--DNYIFLAVGRVGSTSENIT 304 (482)
T ss_pred CcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhh--ccceEEEEeeeccccccce
Confidence 99999999999999 999999999997664 3689999999988543 22222111 111111 00001111122
Q ss_pred EEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCC
Q 039491 578 HCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSG 657 (1379)
Q Consensus 578 ~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~ 657 (1379)
+.+....
T Consensus 305 q~i~~V~------------------------------------------------------------------------- 311 (482)
T KOG0335|consen 305 QKILFVN------------------------------------------------------------------------- 311 (482)
T ss_pred eEeeeec-------------------------------------------------------------------------
Confidence 2111111
Q ss_pred CCCCCcccccchhHHHHHHHHHHHhCC---------CCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhh
Q 039491 658 GSQNNWGLRRSEVSIWLTLINKLSKKS---------LLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFS 728 (1379)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~Li~~L~~~~---------~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~ 728 (1379)
+..+...|++.|.... ...++|||.+++.|..++..|...++....
T Consensus 312 -----------~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~s-------------- 366 (482)
T KOG0335|consen 312 -----------EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKS-------------- 366 (482)
T ss_pred -----------chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCcee--------------
Confidence 1111222333332211 137999999999999999999998887654
Q ss_pred hccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCccc
Q 039491 729 RLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREF 808 (1379)
Q Consensus 729 ~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~ 808 (1379)
.||..++.+|+..+.+|+.|.+.|||||+++|+|+|+|.+++||+ ||.
T Consensus 367 -------------------------Ihg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn----yDm--- 414 (482)
T KOG0335|consen 367 -------------------------IHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN----YDM--- 414 (482)
T ss_pred -------------------------ecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE----eec---
Confidence 899999999999999999999999999999999999999999999 999
Q ss_pred ccCCHHHHHHHhcccCCCCCCCcEEEEEEecCC
Q 039491 809 RQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 809 rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~ 841 (1379)
|.+..+|+||+||+||.|.. |.++.|++..
T Consensus 415 -P~d~d~YvHRIGRTGR~Gn~--G~atsf~n~~ 444 (482)
T KOG0335|consen 415 -PADIDDYVHRIGRTGRVGNG--GRATSFFNEK 444 (482)
T ss_pred -CcchhhHHHhccccccCCCC--ceeEEEeccc
Confidence 89999999999999999975 9999888743
No 46
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-36 Score=335.05 Aligned_cols=332 Identities=19% Similarity=0.218 Sum_probs=257.3
Q ss_pred CCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHH---------hcCCcE
Q 039491 377 GSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALAT---------KHCTRA 446 (1379)
Q Consensus 377 ~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l---------~~~~ra 446 (1379)
...+++++++.+ .+|+ |+|+|.+|+|.+++|.+++.+|.||+|||++|+++-...+ +.+..+
T Consensus 226 q~~pevmenIkK--------~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~ 297 (629)
T KOG0336|consen 226 QCYPEVMENIKK--------TGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGV 297 (629)
T ss_pred hhhHHHHHHHHh--------ccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCce
Confidence 345556666655 7999 9999999999999999999999999999999988743332 457899
Q ss_pred EEecchHHHHHHHHHHHhccc-----cEEEEecCcc------cCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccC
Q 039491 447 VYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVS------LRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVH 515 (1379)
Q Consensus 447 IylsPtkaLsnQk~~~~~~~f-----~VglltGdv~------in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH 515 (1379)
++++||++|+.|.--+.+++- .|.++.|+.. +.....|+|+||++|.++.+.+...++.+.++|+|||+
T Consensus 298 lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEAD 377 (629)
T KOG0336|consen 298 LVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEAD 377 (629)
T ss_pred EEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchh
Confidence 999999999999887776653 4444444332 34568999999999999999999999999999999999
Q ss_pred CCCCccchhHHHHHHHHcCccceEEEecccCCChH-HHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcc
Q 039491 516 YVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTV-EFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEA 594 (1379)
Q Consensus 516 ~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~-efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~ 594 (1379)
+|+|.++.+.+..++.-+.++.|+++.|||.|... .++. ...+.++.++......+.... ..+.+ ++..
T Consensus 378 rMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~---sY~Kep~~v~vGsLdL~a~~s----VkQ~i-~v~~-- 447 (629)
T KOG0336|consen 378 RMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQ---SYLKEPMIVYVGSLDLVAVKS----VKQNI-IVTT-- 447 (629)
T ss_pred hhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHH---HhhhCceEEEecccceeeeee----eeeeE-Eecc--
Confidence 99999999999999999999999999999999875 3333 344556666555433322110 00111 1110
Q ss_pred cchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHH
Q 039491 595 FIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWL 674 (1379)
Q Consensus 595 f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1379)
+...+
T Consensus 448 --------------------------------------------------------------------------d~~k~- 452 (629)
T KOG0336|consen 448 --------------------------------------------------------------------------DSEKL- 452 (629)
T ss_pred --------------------------------------------------------------------------cHHHH-
Confidence 11112
Q ss_pred HHHHHHHh--CCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceE
Q 039491 675 TLINKLSK--KSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIA 752 (1379)
Q Consensus 675 ~Li~~L~~--~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIa 752 (1379)
.+++.+.. ....++||||.++..|+.+...|.-.++.+..
T Consensus 453 ~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~-------------------------------------- 494 (629)
T KOG0336|consen 453 EIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQS-------------------------------------- 494 (629)
T ss_pred HHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhh--------------------------------------
Confidence 22332222 12468999999999988887777655655543
Q ss_pred EecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcE
Q 039491 753 IHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIG 832 (1379)
Q Consensus 753 vhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G 832 (1379)
+||+-.+.+|+..++.|++|.++|||||+++++|+|+|++++|++ ||. |.+..+|+||+||+||+|+. |
T Consensus 495 -lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N----yDF----P~nIeeYVHRvGrtGRaGr~--G 563 (629)
T KOG0336|consen 495 -LHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYN----YDF----PRNIEEYVHRVGRTGRAGRT--G 563 (629)
T ss_pred -ccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeec----cCC----CccHHHHHHHhcccccCCCC--c
Confidence 899999999999999999999999999999999999999999999 999 99999999999999999976 8
Q ss_pred EEEEEecCCCCCHHHHHHHH
Q 039491 833 TVVVLCRDEIPGESDLKHII 852 (1379)
Q Consensus 833 ~vIil~~~~~~~~~~l~~li 852 (1379)
++|.+.+.+ +...+..+|
T Consensus 564 ~sis~lt~~--D~~~a~eLI 581 (629)
T KOG0336|consen 564 TSISFLTRN--DWSMAEELI 581 (629)
T ss_pred ceEEEEehh--hHHHHHHHH
Confidence 888877654 344444444
No 47
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=5.5e-36 Score=366.03 Aligned_cols=388 Identities=26% Similarity=0.372 Sum_probs=280.7
Q ss_pred CCHHHHHHHH--HHHCCCcEEEEcCCCccHHHHHHHHHHHHH-hcCCcEEEecchHHHHHHHHHHHhccc-cEEE----E
Q 039491 401 LDNFQKEAIY--YLENGDSVFVAAHTSAGKTVVAEYAFALAT-KHCTRAVYTAPIKTISNQKYRDFSGKF-DVGL----L 472 (1379)
Q Consensus 401 L~~~Q~eAI~--~L~~g~sVlV~ApTGSGKTlvae~aI~~~l-~~~~raIylsPtkaLsnQk~~~~~~~f-~Vgl----l 472 (1379)
+..||.+++. .++.++|.+.++|||+|||+|+++.++..+ -....++.+.|..+.+..+...+...+ +.|+ +
T Consensus 224 ~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y 303 (1008)
T KOG0950|consen 224 LFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFPVEEY 303 (1008)
T ss_pred HHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCCcchhh
Confidence 6799999984 477899999999999999999999987755 567789999999999999998888876 4444 3
Q ss_pred ecCcc---cCCCCceeeecHHHHHHHHhc--CcccCCCccEEEEeccCCCCCccchhHHHHHHHHc-----CccceEEEe
Q 039491 473 TGDVS---LRPEASCLIMTTEILRSMLYR--GADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML-----PRHINIVLL 542 (1379)
Q Consensus 473 tGdv~---in~~a~IlV~TpEiL~smL~~--~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L-----p~~vqiIlL 542 (1379)
.|... .....++.|+|.|+-.++..+ ....+..+++||+||.|.+.|.+||...|.++..+ ...+|+|+|
T Consensus 304 ~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGM 383 (1008)
T KOG0950|consen 304 AGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQIIGM 383 (1008)
T ss_pred cccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccceeEeee
Confidence 44333 334568999999977554433 12346779999999999999999999999887532 345789999
Q ss_pred cccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCC
Q 039491 543 SATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSY 622 (1379)
Q Consensus 543 SATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~ 622 (1379)
|||++|...+.+|+. -.++.+.+|||||..|+.++..+|.... . .........+.. ..
T Consensus 384 SATi~N~~lL~~~L~------A~~y~t~fRPv~L~E~ik~G~~i~~~~r-~----~~lr~ia~l~~~----~~------- 441 (1008)
T KOG0950|consen 384 SATIPNNSLLQDWLD------AFVYTTRFRPVPLKEYIKPGSLIYESSR-N----KVLREIANLYSS----NL------- 441 (1008)
T ss_pred ecccCChHHHHHHhh------hhheecccCcccchhccCCCcccccchh-h----HHHHHhhhhhhh----hc-------
Confidence 999999999999997 3577888999999999876665544321 0 000000000000 00
Q ss_pred CCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHH
Q 039491 623 AGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLA 702 (1379)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA 702 (1379)
| ..+.+.+..++..... .+..+||||+||+.|+.+|
T Consensus 442 --------------------g-----------------------~~dpD~~v~L~tet~~-e~~~~lvfc~sk~~ce~~a 477 (1008)
T KOG0950|consen 442 --------------------G-----------------------DEDPDHLVGLCTETAP-EGSSVLVFCPSKKNCENVA 477 (1008)
T ss_pred --------------------c-----------------------cCCCcceeeehhhhhh-cCCeEEEEcCcccchHHHH
Confidence 0 0011223333333322 2467999999999999999
Q ss_pred HHhhcCCCCCchhhhHHHH--HHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEe
Q 039491 703 DGMSGIDLTSSSEKSEIRV--FCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFS 780 (1379)
Q Consensus 703 ~~L~~~~l~~~~ek~~i~~--~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVA 780 (1379)
..+... +........... -+......+......+.. -+...+..|+++||+|++..+|+.|+..|++|.+.|++|
T Consensus 478 ~~~~~~-vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~--Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~a 554 (1008)
T KOG0950|consen 478 SLIAKK-VPKHIKSEKRLGLWELLSISNLLRRIPGILDP--VLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVA 554 (1008)
T ss_pred HHHHHH-hhHhhhhhhhhhHHHHHHHHhHhhcCCcccch--HHheeccccceecccccccchHHHHHHHHHhcCeEEEEe
Confidence 776442 111100000000 000000111111111222 267788899999999999999999999999999999999
Q ss_pred cccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHHhcCCCccc
Q 039491 781 TETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLE 860 (1379)
Q Consensus 781 Tetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li~g~~~~L~ 860 (1379)
|+|++.|+|+|+++|+|.... +.. ..++..+|.||+|||||.|.|+.|.+|+++... +...+..|+.+...++.
T Consensus 555 TSTlaaGVNLPArRVIiraP~-~g~---~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~--e~~~~~~lv~~~~~~~~ 628 (1008)
T KOG0950|consen 555 TSTLAAGVNLPARRVIIRAPY-VGR---EFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSS--EKKRVRELVNSPLKPLN 628 (1008)
T ss_pred cchhhccCcCCcceeEEeCCc-ccc---chhhhhhHHhhhhhhhhcccccCcceEEEeecc--chhHHHHHHhccccccc
Confidence 999999999999999998443 443 367899999999999999999999999999876 56778899999999998
Q ss_pred ccc
Q 039491 861 SQF 863 (1379)
Q Consensus 861 S~f 863 (1379)
|.+
T Consensus 629 S~l 631 (1008)
T KOG0950|consen 629 SCL 631 (1008)
T ss_pred ccc
Confidence 876
No 48
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.2e-34 Score=370.89 Aligned_cols=303 Identities=21% Similarity=0.232 Sum_probs=228.5
Q ss_pred hccCCCCCCHHHHHHHHHHHCC------CcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc
Q 039491 394 ALDFPFELDNFQKEAIYYLENG------DSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF 467 (1379)
Q Consensus 394 a~~~pFeL~~~Q~eAI~~L~~g------~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f 467 (1379)
...|||+|++.|.+||+.+.++ .+++++|+||+|||.||..|++.++..+.+++|++||++|+.|+++.|++.|
T Consensus 445 ~~~~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~ 524 (926)
T TIGR00580 445 EDSFPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERF 524 (926)
T ss_pred HHhCCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 3468999999999999999764 6899999999999999999999999899999999999999999999999876
Q ss_pred -----cEEEEecCccc-----------CCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHH
Q 039491 468 -----DVGLLTGDVSL-----------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVII 531 (1379)
Q Consensus 468 -----~VglltGdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~ 531 (1379)
++++++|..+. +.+.+|+|+||..+ .....++++++||+||+|++ |+...+.+.
T Consensus 525 ~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrf-----gv~~~~~L~ 594 (926)
T TIGR00580 525 ANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRF-----GVKQKEKLK 594 (926)
T ss_pred ccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeeccccc-----chhHHHHHH
Confidence 57788887652 23578999999543 23456889999999999985 555566777
Q ss_pred HcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEcc-CCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhh
Q 039491 532 MLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGT-TKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRK 610 (1379)
Q Consensus 532 ~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t-~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~ 610 (1379)
.++.++++++||||+.. ..+...+.. ..++.++.+ +....|+.+++....
T Consensus 595 ~~~~~~~vL~~SATpip-rtl~~~l~g--~~d~s~I~~~p~~R~~V~t~v~~~~-------------------------- 645 (926)
T TIGR00580 595 ELRTSVDVLTLSATPIP-RTLHMSMSG--IRDLSIIATPPEDRLPVRTFVMEYD-------------------------- 645 (926)
T ss_pred hcCCCCCEEEEecCCCH-HHHHHHHhc--CCCcEEEecCCCCccceEEEEEecC--------------------------
Confidence 78888999999999532 222222221 112223322 222234444332100
Q ss_pred ccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEE
Q 039491 611 NLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVI 690 (1379)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIV 690 (1379)
.......+.+.+.+ +.+++|
T Consensus 646 ----------------------------------------------------------~~~i~~~i~~el~~--g~qv~i 665 (926)
T TIGR00580 646 ----------------------------------------------------------PELVREAIRRELLR--GGQVFY 665 (926)
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHc--CCeEEE
Confidence 00111122233332 468999
Q ss_pred EeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHh
Q 039491 691 FCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLF 770 (1379)
Q Consensus 691 Fv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF 770 (1379)
||++++.++.+++.|.+... ...|+++||+|++.+|+.++..|
T Consensus 666 f~n~i~~~e~l~~~L~~~~p-------------------------------------~~~v~~lHG~m~~~eRe~im~~F 708 (926)
T TIGR00580 666 VHNRIESIEKLATQLRELVP-------------------------------------EARIAIAHGQMTENELEEVMLEF 708 (926)
T ss_pred EECCcHHHHHHHHHHHHhCC-------------------------------------CCeEEEecCCCCHHHHHHHHHHH
Confidence 99999999999988865310 12388999999999999999999
Q ss_pred cCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCC
Q 039491 771 CRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 771 ~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~ 841 (1379)
++|.++|||||+++++|||+|.+++||. ++... ....+|.||+||+||.|.. |.||+++.+.
T Consensus 709 ~~Gk~~ILVaT~iie~GIDIp~v~~VIi----~~a~~---~gls~l~Qr~GRvGR~g~~--g~aill~~~~ 770 (926)
T TIGR00580 709 YKGEFQVLVCTTIIETGIDIPNANTIII----ERADK---FGLAQLYQLRGRVGRSKKK--AYAYLLYPHQ 770 (926)
T ss_pred HcCCCCEEEECChhhcccccccCCEEEE----ecCCC---CCHHHHHHHhcCCCCCCCC--eEEEEEECCc
Confidence 9999999999999999999999999887 55421 2456899999999999964 9999998653
No 49
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=330.87 Aligned_cols=336 Identities=18% Similarity=0.188 Sum_probs=278.1
Q ss_pred CCCccccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHH--
Q 039491 364 GGGQQQKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALAT-- 440 (1379)
Q Consensus 364 ~~~~~~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l-- 440 (1379)
.++..+.++|+|.+....+++.... --|+ |+|+|-+|++..+.|++|+-.|-||||||.+|..++...+
T Consensus 216 ~s~~rpvtsfeh~gfDkqLm~airk--------~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himd 287 (731)
T KOG0339|consen 216 SSPPRPVTSFEHFGFDKQLMTAIRK--------SEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMD 287 (731)
T ss_pred CCCCCCcchhhhcCchHHHHHHHhh--------hhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcc
Confidence 3456678899999999999998876 3455 9999999999999999999999999999999999987765
Q ss_pred ------hcCCcEEEecchHHHHHHHHHHHhccc-----cEEEEecCccc-------CCCCceeeecHHHHHHHHhcCccc
Q 039491 441 ------KHCTRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSL-------RPEASCLIMTTEILRSMLYRGADI 502 (1379)
Q Consensus 441 ------~~~~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~i-------n~~a~IlV~TpEiL~smL~~~~~~ 502 (1379)
..++..+|++||++|+.|++.+.+++. ++..+.|+.+. ...+.|+|+||++|..|+..++..
T Consensus 288 q~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn 367 (731)
T KOG0339|consen 288 QPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATN 367 (731)
T ss_pred hhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhccc
Confidence 357899999999999999999888764 55566666653 346899999999999999999999
Q ss_pred CCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCC--cCceEEE
Q 039491 503 IRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRP--VPLEHCL 580 (1379)
Q Consensus 503 l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~Rp--vpLe~~l 580 (1379)
+.++.++||||+++|.+.++......|..++.+..|.|+||||++-..+ .........++.++..+.-. ..+.+.+
T Consensus 368 ~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe--~lard~L~dpVrvVqg~vgean~dITQ~V 445 (731)
T KOG0339|consen 368 LSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIE--KLARDILSDPVRVVQGEVGEANEDITQTV 445 (731)
T ss_pred ceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHH--HHHHHHhcCCeeEEEeehhccccchhhee
Confidence 9999999999999999999999999999999999999999999876553 33333445566554432110 0011111
Q ss_pred eecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCC
Q 039491 581 YYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQ 660 (1379)
Q Consensus 581 ~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~ 660 (1379)
+
T Consensus 446 ~------------------------------------------------------------------------------- 446 (731)
T KOG0339|consen 446 S------------------------------------------------------------------------------- 446 (731)
T ss_pred e-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCcccccchhHHHHHHHHHHHhC-CCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchh
Q 039491 661 NNWGLRRSEVSIWLTLINKLSKK-SLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQ 739 (1379)
Q Consensus 661 ~~~~~~~~~~~~~~~Li~~L~~~-~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpq 739 (1379)
...+...+|..|++.|... ..+++|||+..+..+++++..|.-.++.
T Consensus 447 ----V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~---------------------------- 494 (731)
T KOG0339|consen 447 ----VCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFN---------------------------- 494 (731)
T ss_pred ----eccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccce----------------------------
Confidence 0112456788888887653 4579999999999999999998765544
Q ss_pred HHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHH
Q 039491 740 IVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQM 819 (1379)
Q Consensus 740 i~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQm 819 (1379)
|+.+||+|.+.+|..++..|+++...||+||+++++|+|+|....|++ ||. ..+...|+||
T Consensus 495 -----------v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn----yD~----ardIdththr 555 (731)
T KOG0339|consen 495 -----------VSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN----YDF----ARDIDTHTHR 555 (731)
T ss_pred -----------eeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec----ccc----cchhHHHHHH
Confidence 567999999999999999999999999999999999999999999999 998 7788999999
Q ss_pred hcccCCCCCCCcEEEEEEecCC
Q 039491 820 AGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 820 aGRAGRrG~d~~G~vIil~~~~ 841 (1379)
+||+||.|.. |+++.++++.
T Consensus 556 igrtgRag~k--GvayTlvTeK 575 (731)
T KOG0339|consen 556 IGRTGRAGEK--GVAYTLVTEK 575 (731)
T ss_pred hhhccccccc--ceeeEEechh
Confidence 9999999964 9999999875
No 50
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.6e-35 Score=328.86 Aligned_cols=328 Identities=19% Similarity=0.223 Sum_probs=264.2
Q ss_pred ccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHH---------
Q 039491 371 EAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALAT--------- 440 (1379)
Q Consensus 371 ~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l--------- 440 (1379)
.+|+++++.+.++.++.+ .+|+ |+-+|..||+.++.|+++++.|.||||||.+|++|+++.+
T Consensus 19 ktFe~~gLD~RllkAi~~--------lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~ 90 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITK--------LGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDG 90 (569)
T ss_pred ccHHHhCCCHHHHHHHHH--------hCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccc
Confidence 689999999999999998 7898 9999999999999999999999999999999999998877
Q ss_pred hcCCcEEEecchHHHHHHHHHHHhccc-------cEEEEecCcc-------cCCCCceeeecHHHHHHHHhcCc-ccCCC
Q 039491 441 KHCTRAVYTAPIKTISNQKYRDFSGKF-------DVGLLTGDVS-------LRPEASCLIMTTEILRSMLYRGA-DIIRD 505 (1379)
Q Consensus 441 ~~~~raIylsPtkaLsnQk~~~~~~~f-------~VglltGdv~-------in~~a~IlV~TpEiL~smL~~~~-~~l~~ 505 (1379)
..+..+++++|||+|+.|.|..+.+.- ++.-++.+.+ +....+|+|+||..+..++..+. ..+..
T Consensus 91 e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~ 170 (569)
T KOG0346|consen 91 EQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDS 170 (569)
T ss_pred cccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhh
Confidence 346889999999999999999887753 2222232222 23457999999999999998887 67889
Q ss_pred ccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCC-CC--cCceEEEee
Q 039491 506 IEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTK-RP--VPLEHCLYY 582 (1379)
Q Consensus 506 v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~-Rp--vpLe~~l~~ 582 (1379)
++++|+|||+.+..-++...+..+...||+..|.++||||+.+...-.. .....+|+.+--++. -| -.|.+|.+.
T Consensus 171 l~~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LK--kL~l~nPviLkl~e~el~~~dqL~Qy~v~ 248 (569)
T KOG0346|consen 171 LSFLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALK--KLFLHNPVILKLTEGELPNPDQLTQYQVK 248 (569)
T ss_pred eeeEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHH--HHhccCCeEEEeccccCCCcccceEEEEE
Confidence 9999999999999888888888999999999999999999987654222 223355665544432 22 346666543
Q ss_pred cCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCC
Q 039491 583 SGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNN 662 (1379)
Q Consensus 583 ~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~ 662 (1379)
+. +.
T Consensus 249 cs------e~---------------------------------------------------------------------- 252 (569)
T KOG0346|consen 249 CS------EE---------------------------------------------------------------------- 252 (569)
T ss_pred ec------cc----------------------------------------------------------------------
Confidence 32 00
Q ss_pred cccccchhH-HHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHH
Q 039491 663 WGLRRSEVS-IWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIV 741 (1379)
Q Consensus 663 ~~~~~~~~~-~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~ 741 (1379)
++- .++.+++ |.- -.++.|||+++..+|..+--.|.+.|+.+.
T Consensus 253 ------DKflllyallK-L~L-I~gKsliFVNtIdr~YrLkLfLeqFGiksc---------------------------- 296 (569)
T KOG0346|consen 253 ------DKFLLLYALLK-LRL-IRGKSLIFVNTIDRCYRLKLFLEQFGIKSC---------------------------- 296 (569)
T ss_pred ------hhHHHHHHHHH-HHH-hcCceEEEEechhhhHHHHHHHHHhCcHhh----------------------------
Confidence 111 1122222 111 136899999999999999999988887653
Q ss_pred HHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecc-----------------------------------cccc
Q 039491 742 RVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTE-----------------------------------TFAM 786 (1379)
Q Consensus 742 ~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATe-----------------------------------tla~ 786 (1379)
+++|.|+..-|-.|+..|..|..++||||+ -.++
T Consensus 297 -----------iLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsR 365 (569)
T KOG0346|consen 297 -----------ILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSR 365 (569)
T ss_pred -----------hhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhc
Confidence 488999999999999999999999999999 2689
Q ss_pred cCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCC
Q 039491 787 GVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 787 GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~ 841 (1379)
|||+..+..|++ ||. |-++..|+||+||++|.|.. |+++.|+.+.
T Consensus 366 GIDF~~V~~VlN----FD~----P~t~~sYIHRvGRTaRg~n~--GtalSfv~P~ 410 (569)
T KOG0346|consen 366 GIDFHHVSNVLN----FDF----PETVTSYIHRVGRTARGNNK--GTALSFVSPK 410 (569)
T ss_pred cccchheeeeee----cCC----CCchHHHHHhccccccCCCC--CceEEEecch
Confidence 999999999999 999 99999999999999999965 8888888653
No 51
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=4e-34 Score=363.69 Aligned_cols=307 Identities=21% Similarity=0.310 Sum_probs=218.1
Q ss_pred cCCCCCCHHHHHHHHHHHCC------CcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc--
Q 039491 396 DFPFELDNFQKEAIYYLENG------DSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-- 467 (1379)
Q Consensus 396 ~~pFeL~~~Q~eAI~~L~~g------~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-- 467 (1379)
.+||+|++.|++|++.+.++ .+++++|+||||||++|.++++.++..+.+++|++||++|+.|+++.|++.+
T Consensus 257 ~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~ 336 (681)
T PRK10917 257 SLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEP 336 (681)
T ss_pred hCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 58999999999999999776 4799999999999999999999999999999999999999999999999876
Q ss_pred ---cEEEEecCccc-----------CCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc
Q 039491 468 ---DVGLLTGDVSL-----------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML 533 (1379)
Q Consensus 468 ---~VglltGdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L 533 (1379)
++++++|+.+. +.+++|+|+|++.+.. ...+.++++||+||+|++.... ...+...
T Consensus 337 ~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~~q-----r~~l~~~ 406 (681)
T PRK10917 337 LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGVEQ-----RLALREK 406 (681)
T ss_pred cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhHHH-----HHHHHhc
Confidence 68999999873 3368999999987743 2357899999999999874333 3334444
Q ss_pred CccceEEEecccCC-ChHHHHHHHhhhcCCcEEEEcc-CCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhc
Q 039491 534 PRHINIVLLSATVP-NTVEFADWIGRTKQKKIRVTGT-TKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKN 611 (1379)
Q Consensus 534 p~~vqiIlLSATvp-N~~efa~wl~~~~~~~i~vi~t-~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~ 611 (1379)
+..+++++||||+. ....+.. .+ ...+.++.. +....|+..++....
T Consensus 407 ~~~~~iL~~SATp~prtl~~~~-~g---~~~~s~i~~~p~~r~~i~~~~~~~~--------------------------- 455 (681)
T PRK10917 407 GENPHVLVMTATPIPRTLAMTA-YG---DLDVSVIDELPPGRKPITTVVIPDS--------------------------- 455 (681)
T ss_pred CCCCCEEEEeCCCCHHHHHHHH-cC---CCceEEEecCCCCCCCcEEEEeCcc---------------------------
Confidence 55689999999953 2222221 11 111222211 111112222211000
Q ss_pred cccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEE
Q 039491 612 LSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIF 691 (1379)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVF 691 (1379)
.....+..+.+.+ ..+.+++||
T Consensus 456 --------------------------------------------------------~~~~~~~~i~~~~--~~g~q~~v~ 477 (681)
T PRK10917 456 --------------------------------------------------------RRDEVYERIREEI--AKGRQAYVV 477 (681)
T ss_pred --------------------------------------------------------cHHHHHHHHHHHH--HcCCcEEEE
Confidence 0111222233333 235799999
Q ss_pred eCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhh-ccceEEecCCCChHHHHHHHHHh
Q 039491 692 CFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLL-RRGIAIHHAGLLPIVKEVIEMLF 770 (1379)
Q Consensus 692 v~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL-~rGIavhHggL~~~~Re~Ve~lF 770 (1379)
|+..++++.+. +. ......+ .+...+ ...|+++||+|++.+|+.++..|
T Consensus 478 ~~~ie~s~~l~-------~~------~~~~~~~-----------------~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F 527 (681)
T PRK10917 478 CPLIEESEKLD-------LQ------SAEETYE-----------------ELQEAFPELRVGLLHGRMKPAEKDAVMAAF 527 (681)
T ss_pred Ecccccccchh-------HH------HHHHHHH-----------------HHHHHCCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 99766544320 00 0000000 111111 13589999999999999999999
Q ss_pred cCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecC
Q 039491 771 CRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRD 840 (1379)
Q Consensus 771 ~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~ 840 (1379)
++|.++|||||+++++|||+|++++||. |+... .....|.||+||+||.|.. |.||+++++
T Consensus 528 ~~g~~~ILVaT~vie~GiDip~v~~VIi----~~~~r---~gls~lhQ~~GRvGR~g~~--g~~ill~~~ 588 (681)
T PRK10917 528 KAGEIDILVATTVIEVGVDVPNATVMVI----ENAER---FGLAQLHQLRGRVGRGAAQ--SYCVLLYKD 588 (681)
T ss_pred HcCCCCEEEECcceeeCcccCCCcEEEE----eCCCC---CCHHHHHHHhhcccCCCCc--eEEEEEECC
Confidence 9999999999999999999999999998 77632 2467899999999999864 999999964
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=4.7e-34 Score=374.81 Aligned_cols=303 Identities=21% Similarity=0.236 Sum_probs=227.9
Q ss_pred hhccCCCCCCHHHHHHHHHHHCC------CcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhcc
Q 039491 393 LALDFPFELDNFQKEAIYYLENG------DSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGK 466 (1379)
Q Consensus 393 ~a~~~pFeL~~~Q~eAI~~L~~g------~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~ 466 (1379)
+...|||+|++.|.+||+.+..+ .+++++|+||+|||.+|..++..++..+.+++|++||++|+.|+++.|++.
T Consensus 593 ~~~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~ 672 (1147)
T PRK10689 593 FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDR 672 (1147)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHh
Confidence 34469999999999999998776 799999999999999999998888888999999999999999999999987
Q ss_pred c-----cEEEEecCccc-----------CCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHH
Q 039491 467 F-----DVGLLTGDVSL-----------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVI 530 (1379)
Q Consensus 467 f-----~VglltGdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii 530 (1379)
| ++++++|..+. +...+|+|+||+.+. ....+.++++||+||+|++ |+...+.+
T Consensus 673 ~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrf-----G~~~~e~l 742 (1147)
T PRK10689 673 FANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRF-----GVRHKERI 742 (1147)
T ss_pred hccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhc-----chhHHHHH
Confidence 6 56778876542 235789999997553 2345689999999999997 44445667
Q ss_pred HHcCccceEEEecccCC-ChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHh
Q 039491 531 IMLPRHINIVLLSATVP-NTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKR 609 (1379)
Q Consensus 531 ~~Lp~~vqiIlLSATvp-N~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~ 609 (1379)
..++.++|+++||||+. .+..++... ..++..+...+....++.+++....
T Consensus 743 k~l~~~~qvLl~SATpiprtl~l~~~g---l~d~~~I~~~p~~r~~v~~~~~~~~------------------------- 794 (1147)
T PRK10689 743 KAMRADVDILTLTATPIPRTLNMAMSG---MRDLSIIATPPARRLAVKTFVREYD------------------------- 794 (1147)
T ss_pred HhcCCCCcEEEEcCCCCHHHHHHHHhh---CCCcEEEecCCCCCCCceEEEEecC-------------------------
Confidence 78888999999999954 444433221 1223333222222234444332100
Q ss_pred hccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEE
Q 039491 610 KNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVV 689 (1379)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvI 689 (1379)
.......++..+.+ +++++
T Consensus 795 -----------------------------------------------------------~~~~k~~il~el~r--~gqv~ 813 (1147)
T PRK10689 795 -----------------------------------------------------------SLVVREAILREILR--GGQVY 813 (1147)
T ss_pred -----------------------------------------------------------cHHHHHHHHHHHhc--CCeEE
Confidence 00111223333333 46899
Q ss_pred EEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHH
Q 039491 690 IFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEML 769 (1379)
Q Consensus 690 VFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~l 769 (1379)
|||++++.|+.+++.|.+... ..+|+++||+|++.+|+.++..
T Consensus 814 vf~n~i~~ie~la~~L~~~~p-------------------------------------~~~v~~lHG~m~q~eRe~im~~ 856 (1147)
T PRK10689 814 YLYNDVENIQKAAERLAELVP-------------------------------------EARIAIGHGQMRERELERVMND 856 (1147)
T ss_pred EEECCHHHHHHHHHHHHHhCC-------------------------------------CCcEEEEeCCCCHHHHHHHHHH
Confidence 999999999999998865310 1248889999999999999999
Q ss_pred hcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecC
Q 039491 770 FCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRD 840 (1379)
Q Consensus 770 F~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~ 840 (1379)
|++|.++|||||+++++|||+|++++||. .+.. ..+...|+||+||+||.|.. |.||+++.+
T Consensus 857 Fr~Gk~~VLVaTdIierGIDIP~v~~VIi----~~ad---~fglaq~~Qr~GRvGR~g~~--g~a~ll~~~ 918 (1147)
T PRK10689 857 FHHQRFNVLVCTTIIETGIDIPTANTIII----ERAD---HFGLAQLHQLRGRVGRSHHQ--AYAWLLTPH 918 (1147)
T ss_pred HHhcCCCEEEECchhhcccccccCCEEEE----ecCC---CCCHHHHHHHhhccCCCCCc--eEEEEEeCC
Confidence 99999999999999999999999999884 2221 12346799999999999965 999998864
No 53
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=5.3e-34 Score=360.27 Aligned_cols=308 Identities=19% Similarity=0.283 Sum_probs=215.3
Q ss_pred cCCCCCCHHHHHHHHHHHCC------CcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc--
Q 039491 396 DFPFELDNFQKEAIYYLENG------DSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-- 467 (1379)
Q Consensus 396 ~~pFeL~~~Q~eAI~~L~~g------~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-- 467 (1379)
.+||+|+++|++|++.+..+ .+.+++|+||||||++|.++++.++.++.+++|++||++|+.|+++.+++.+
T Consensus 231 ~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~ 310 (630)
T TIGR00643 231 SLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAP 310 (630)
T ss_pred hCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcc
Confidence 58999999999999998765 3689999999999999999999999999999999999999999999999876
Q ss_pred ---cEEEEecCccc-----------CCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc
Q 039491 468 ---DVGLLTGDVSL-----------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML 533 (1379)
Q Consensus 468 ---~VglltGdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L 533 (1379)
++++++|+... +.+++|+|+|++.+.. ...+.++++||+||+|++....|...++ ..
T Consensus 311 ~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~qr~~l~~----~~ 381 (630)
T TIGR00643 311 LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVEQRKKLRE----KG 381 (630)
T ss_pred cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHHHHHHHHH----hc
Confidence 78999998763 2357999999987753 2357899999999999876544433322 22
Q ss_pred C--ccceEEEecccCC-ChHHHHHHHhhhcCCcEEEEcc-CCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHh
Q 039491 534 P--RHINIVLLSATVP-NTVEFADWIGRTKQKKIRVTGT-TKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKR 609 (1379)
Q Consensus 534 p--~~vqiIlLSATvp-N~~efa~wl~~~~~~~i~vi~t-~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~ 609 (1379)
+ ..+++++||||+. ....+..+ +.. ...++.. +....|+..++....
T Consensus 382 ~~~~~~~~l~~SATp~prtl~l~~~-~~l---~~~~i~~~p~~r~~i~~~~~~~~------------------------- 432 (630)
T TIGR00643 382 QGGFTPHVLVMSATPIPRTLALTVY-GDL---DTSIIDELPPGRKPITTVLIKHD------------------------- 432 (630)
T ss_pred ccCCCCCEEEEeCCCCcHHHHHHhc-CCc---ceeeeccCCCCCCceEEEEeCcc-------------------------
Confidence 2 2578999999953 32222111 100 1111110 111112222111000
Q ss_pred hccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEE
Q 039491 610 KNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVV 689 (1379)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvI 689 (1379)
.....+..+.+.+. .+.+++
T Consensus 433 ----------------------------------------------------------~~~~~~~~i~~~l~--~g~q~~ 452 (630)
T TIGR00643 433 ----------------------------------------------------------EKDIVYEFIEEEIA--KGRQAY 452 (630)
T ss_pred ----------------------------------------------------------hHHHHHHHHHHHHH--hCCcEE
Confidence 00111222222222 347899
Q ss_pred EEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHh-hccceEEecCCCChHHHHHHHH
Q 039491 690 IFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSL-LRRGIAIHHAGLLPIVKEVIEM 768 (1379)
Q Consensus 690 VFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~l-L~rGIavhHggL~~~~Re~Ve~ 768 (1379)
|||+....++.+. + .......+ .+... -...|+++||+|++.+|+.++.
T Consensus 453 v~~~~i~~s~~~~--~-----------~~a~~~~~-----------------~L~~~~~~~~v~~lHG~m~~~eR~~i~~ 502 (630)
T TIGR00643 453 VVYPLIEESEKLD--L-----------KAAEALYE-----------------RLKKAFPKYNVGLLHGRMKSDEKEAVME 502 (630)
T ss_pred EEEccccccccch--H-----------HHHHHHHH-----------------HHHhhCCCCcEEEEeCCCCHHHHHHHHH
Confidence 9999876544320 0 00000000 01111 1245899999999999999999
Q ss_pred HhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecC
Q 039491 769 LFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRD 840 (1379)
Q Consensus 769 lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~ 840 (1379)
.|++|.++|||||+++++|||+|++++||. |+... .....|.||+|||||.|.. |.||+++.+
T Consensus 503 ~F~~g~~~ILVaT~vie~GvDiP~v~~VIi----~~~~r---~gls~lhQ~~GRvGR~g~~--g~~il~~~~ 565 (630)
T TIGR00643 503 EFREGEVDILVATTVIEVGVDVPNATVMVI----EDAER---FGLSQLHQLRGRVGRGDHQ--SYCLLVYKN 565 (630)
T ss_pred HHHcCCCCEEEECceeecCcccCCCcEEEE----eCCCc---CCHHHHHHHhhhcccCCCC--cEEEEEECC
Confidence 999999999999999999999999999998 77621 3567899999999999865 999999843
No 54
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-34 Score=327.11 Aligned_cols=320 Identities=20% Similarity=0.223 Sum_probs=228.5
Q ss_pred CCHHHHHHHHHHH---------CCCcEEEEcCCCccHHHHHHHHHHHHHhc----CCcEEEecchHHHHHHHHHHHhccc
Q 039491 401 LDNFQKEAIYYLE---------NGDSVFVAAHTSAGKTVVAEYAFALATKH----CTRAVYTAPIKTISNQKYRDFSGKF 467 (1379)
Q Consensus 401 L~~~Q~eAI~~L~---------~g~sVlV~ApTGSGKTlvae~aI~~~l~~----~~raIylsPtkaLsnQk~~~~~~~f 467 (1379)
+.|+|...++.++ .+++|.|.||||||||++|.+||.+.+.+ .-|+|+++|+++|++|+++.|.+..
T Consensus 160 ~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~ 239 (620)
T KOG0350|consen 160 LFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLN 239 (620)
T ss_pred ccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhc
Confidence 4599999999873 25799999999999999999999999954 4689999999999999999999887
Q ss_pred -----cEEEEecCcccCC------------CCceeeecHHHHHHHHhc-CcccCCCccEEEEeccCCCCCccchhHHHHH
Q 039491 468 -----DVGLLTGDVSLRP------------EASCLIMTTEILRSMLYR-GADIIRDIEWVIFDEVHYVNDIERGVVWEEV 529 (1379)
Q Consensus 468 -----~VglltGdv~in~------------~a~IlV~TpEiL~smL~~-~~~~l~~v~lVI~DEaH~l~d~~rG~v~eei 529 (1379)
.|+.++|..++.. .++|+|+||++|.++|.+ ....+.+++|+|+|||++|.+..|......+
T Consensus 240 ~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v 319 (620)
T KOG0350|consen 240 SGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTV 319 (620)
T ss_pred cCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHH
Confidence 5677777766432 258999999999999985 5677999999999999999987665554444
Q ss_pred HHHcC----------------------------------ccceEEEecccCCChH-HHHHHHhhhcCCcEEEEcc---C-
Q 039491 530 IIMLP----------------------------------RHINIVLLSATVPNTV-EFADWIGRTKQKKIRVTGT---T- 570 (1379)
Q Consensus 530 i~~Lp----------------------------------~~vqiIlLSATvpN~~-efa~wl~~~~~~~i~vi~t---~- 570 (1379)
..++. ++...+.+|||+...- .+.++ ......-..+..+ -
T Consensus 320 ~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l-~l~~Prl~~v~~~~~~ry 398 (620)
T KOG0350|consen 320 MSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDL-TLHIPRLFHVSKPLIGRY 398 (620)
T ss_pred HHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhh-hcCCCceEEeecccceee
Confidence 43321 1223344455543221 11111 0000000000000 0
Q ss_pred CCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccc
Q 039491 571 KRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSV 650 (1379)
Q Consensus 571 ~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~ 650 (1379)
.-|.-|+|+.+...
T Consensus 399 slp~~l~~~~vv~~------------------------------------------------------------------ 412 (620)
T KOG0350|consen 399 SLPSSLSHRLVVTE------------------------------------------------------------------ 412 (620)
T ss_pred ecChhhhhceeecc------------------------------------------------------------------
Confidence 00000111110000
Q ss_pred cccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhh-cCCCCCchhhhHHHHHHHHHhhh
Q 039491 651 VGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMS-GIDLTSSSEKSEIRVFCDKAFSR 729 (1379)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~-~~~l~~~~ek~~i~~~~~~~~~~ 729 (1379)
..-.-..+...+......++|+|++|...+.+++..|. ..+ ...
T Consensus 413 ------------------~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~--~~~--------------- 457 (620)
T KOG0350|consen 413 ------------------PKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFC--SDN--------------- 457 (620)
T ss_pred ------------------cccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhc--ccc---------------
Confidence 00111233444556667899999999999999998886 211 110
Q ss_pred ccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccc
Q 039491 730 LKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFR 809 (1379)
Q Consensus 730 L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~r 809 (1379)
..+..+.|+|....|...+..|+.|.++|||||++++||+|+-++++||+ ||.
T Consensus 458 -------------------~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN----Yd~---- 510 (620)
T KOG0350|consen 458 -------------------FKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN----YDP---- 510 (620)
T ss_pred -------------------chhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee----cCC----
Confidence 01223788999999999999999999999999999999999999999999 999
Q ss_pred cCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHHh
Q 039491 810 QLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIV 853 (1379)
Q Consensus 810 pls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li~ 853 (1379)
|.+...|+||+||++|+|.+ |.||.+.... +...|.+++.
T Consensus 511 P~~~ktyVHR~GRTARAgq~--G~a~tll~~~--~~r~F~klL~ 550 (620)
T KOG0350|consen 511 PASDKTYVHRAGRTARAGQD--GYAITLLDKH--EKRLFSKLLK 550 (620)
T ss_pred CchhhHHHHhhcccccccCC--ceEEEeeccc--cchHHHHHHH
Confidence 99999999999999999988 9999998765 5567777665
No 55
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=3.8e-35 Score=326.25 Aligned_cols=332 Identities=17% Similarity=0.188 Sum_probs=259.4
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHH-------
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALAT------- 440 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l------- 440 (1379)
+-++|.+|-.+..++..+.+ -+.. |+|+|.+.++.+++|++.+..|-||||||++|.+++.+..
T Consensus 168 PIksF~eMKFP~~~L~~lk~--------KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~l 239 (610)
T KOG0341|consen 168 PIKSFKEMKFPKPLLRGLKK--------KGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMML 239 (610)
T ss_pred chhhhhhccCCHHHHHHHHh--------cCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcC
Confidence 34556666666555555544 3444 9999999999999999999999999999999999866543
Q ss_pred ----hcCCcEEEecchHHHHHHHHHHHhccc-----------cEEEEecCcccC-------CCCceeeecHHHHHHHHhc
Q 039491 441 ----KHCTRAVYTAPIKTISNQKYRDFSGKF-----------DVGLLTGDVSLR-------PEASCLIMTTEILRSMLYR 498 (1379)
Q Consensus 441 ----~~~~raIylsPtkaLsnQk~~~~~~~f-----------~VglltGdv~in-------~~a~IlV~TpEiL~smL~~ 498 (1379)
..|+-.++++|+|+|+.|.+.-+..++ +.+++.|++.+. ...+|+|+||++|.+||.+
T Consensus 240 Pf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K 319 (610)
T KOG0341|consen 240 PFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK 319 (610)
T ss_pred ccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH
Confidence 347889999999999999988777654 567889998854 4579999999999999999
Q ss_pred CcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceE
Q 039491 499 GADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEH 578 (1379)
Q Consensus 499 ~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~ 578 (1379)
....+.-.+++.+|||++|.|.+|...+..++..+....|.++||||+|....+ +.....-+|+.|-....-...|
T Consensus 320 K~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~--FAkSALVKPvtvNVGRAGAAsl-- 395 (610)
T KOG0341|consen 320 KIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQN--FAKSALVKPVTVNVGRAGAASL-- 395 (610)
T ss_pred hhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHH--HHHhhcccceEEecccccccch--
Confidence 888888899999999999999999999999999999999999999999976542 2222222232221110000000
Q ss_pred EEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCC
Q 039491 579 CLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGG 658 (1379)
Q Consensus 579 ~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~ 658 (1379)
+........
T Consensus 396 --------------------dViQevEyV--------------------------------------------------- 404 (610)
T KOG0341|consen 396 --------------------DVIQEVEYV--------------------------------------------------- 404 (610)
T ss_pred --------------------hHHHHHHHH---------------------------------------------------
Confidence 000000000
Q ss_pred CCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCch
Q 039491 659 SQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLP 738 (1379)
Q Consensus 659 ~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lp 738 (1379)
....++..++..|.+.. .|++|||..+..++.+.++|--.|..
T Consensus 405 ---------kqEaKiVylLeCLQKT~-PpVLIFaEkK~DVD~IhEYLLlKGVE--------------------------- 447 (610)
T KOG0341|consen 405 ---------KQEAKIVYLLECLQKTS-PPVLIFAEKKADVDDIHEYLLLKGVE--------------------------- 447 (610)
T ss_pred ---------HhhhhhhhHHHHhccCC-CceEEEeccccChHHHHHHHHHccce---------------------------
Confidence 02345667777777654 79999999999999998887543333
Q ss_pred hHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHH
Q 039491 739 QIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQ 818 (1379)
Q Consensus 739 qi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQ 818 (1379)
....|||-.+++|......|+.|+-+|||||++++.|+|+|++.+||+ ||. |-....|+|
T Consensus 448 ------------avaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN----yDM----P~eIENYVH 507 (610)
T KOG0341|consen 448 ------------AVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN----YDM----PEEIENYVH 507 (610)
T ss_pred ------------eEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc----CCC----hHHHHHHHH
Confidence 235899999999999999999999999999999999999999999999 999 889999999
Q ss_pred HhcccCCCCCCCcEEEEEEecCCC
Q 039491 819 MAGRAGRRGLDKIGTVVVLCRDEI 842 (1379)
Q Consensus 819 maGRAGRrG~d~~G~vIil~~~~~ 842 (1379)
|+||+||-|.. |.+..|.+...
T Consensus 508 RIGRTGRsg~~--GiATTfINK~~ 529 (610)
T KOG0341|consen 508 RIGRTGRSGKT--GIATTFINKNQ 529 (610)
T ss_pred HhcccCCCCCc--ceeeeeecccc
Confidence 99999999965 88888887653
No 56
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.1e-34 Score=320.53 Aligned_cols=338 Identities=23% Similarity=0.315 Sum_probs=270.8
Q ss_pred cccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh---cCCc
Q 039491 370 KEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK---HCTR 445 (1379)
Q Consensus 370 ~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~---~~~r 445 (1379)
-.+|.+|++.+.++..++. |+|+ |+.+|++||..+.+|.++++.|.+|+|||.+|..++++.+. ....
T Consensus 25 vdsfddm~L~e~LLrgiy~--------yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~q 96 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYA--------YGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQ 96 (397)
T ss_pred hhhhhhcCCCHHHHhHHHh--------hccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHH
Confidence 3489999999999999998 9999 99999999999999999999999999999999999988873 3477
Q ss_pred EEEecchHHHHHHHHHHHhccc-----cEEEEecCcccC-------C-CCceeeecHHHHHHHHhcCcccCCCccEEEEe
Q 039491 446 AVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSLR-------P-EASCLIMTTEILRSMLYRGADIIRDIEWVIFD 512 (1379)
Q Consensus 446 aIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~in-------~-~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~D 512 (1379)
+++++|+++|+.|.+..+...+ .|..++|+.... + ..+|+|+||+++..|+.++....+.+++.|+|
T Consensus 97 alilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlD 176 (397)
T KOG0327|consen 97 ALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLD 176 (397)
T ss_pred HHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeec
Confidence 9999999999999998888877 455566655532 2 26899999999999999998788889999999
Q ss_pred ccCCCCCccchhHHHHHHHHcCccceEEEecccCCChH-HHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeecc
Q 039491 513 EVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTV-EFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCE 591 (1379)
Q Consensus 513 EaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~-efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d 591 (1379)
|++.+...++-..++.+..++|+.+|++++|||+|... ++++-+. ..++.+...... ..++-. ..+|.-++
T Consensus 177 EaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~---~~pv~i~vkk~~-ltl~gi----kq~~i~v~ 248 (397)
T KOG0327|consen 177 EADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFM---REPVRILVKKDE-LTLEGI----KQFYINVE 248 (397)
T ss_pred chHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhc---cCceEEEecchh-hhhhhe----eeeeeecc
Confidence 99999999999999999999999999999999998764 3333222 233332211110 000000 00000000
Q ss_pred CcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhH
Q 039491 592 NEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVS 671 (1379)
Q Consensus 592 ~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1379)
...
T Consensus 249 -----------------------------------------------------------------------------k~~ 251 (397)
T KOG0327|consen 249 -----------------------------------------------------------------------------KEE 251 (397)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 011
Q ss_pred HHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccce
Q 039491 672 IWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGI 751 (1379)
Q Consensus 672 ~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGI 751 (1379)
++..+..... +...++|||+++..+..+...|...+++ +
T Consensus 252 k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~---------------------------------------~ 290 (397)
T KOG0327|consen 252 KLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFT---------------------------------------V 290 (397)
T ss_pred cccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCce---------------------------------------E
Confidence 2333444443 5678999999999999999999776655 3
Q ss_pred EEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCc
Q 039491 752 AIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKI 831 (1379)
Q Consensus 752 avhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~ 831 (1379)
...||.|.+.+|+.+...|+.|..+||+.|+.+|+|+|+..+..||+ ||. |.....|+||+||+||.|..
T Consensus 291 s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvin----ydl----P~~~~~yihR~gr~gr~grk-- 360 (397)
T KOG0327|consen 291 SAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVN----YDL----PARKENYIHRIGRAGRFGRK-- 360 (397)
T ss_pred EEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeee----ecc----ccchhhhhhhcccccccCCC--
Confidence 45999999999999999999999999999999999999999999999 999 89999999999999999976
Q ss_pred EEEEEEecCCCCCHHHHHHHHh
Q 039491 832 GTVVVLCRDEIPGESDLKHIIV 853 (1379)
Q Consensus 832 G~vIil~~~~~~~~~~l~~li~ 853 (1379)
|.++.++++. +...++++-.
T Consensus 361 g~~in~v~~~--d~~~lk~ie~ 380 (397)
T KOG0327|consen 361 GVAINFVTEE--DVRDLKDIEK 380 (397)
T ss_pred ceeeeeehHh--hHHHHHhHHH
Confidence 9999999875 4566666553
No 57
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=6.1e-33 Score=354.34 Aligned_cols=388 Identities=15% Similarity=0.140 Sum_probs=266.5
Q ss_pred HHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc------cEEEEec-C
Q 039491 403 NFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF------DVGLLTG-D 475 (1379)
Q Consensus 403 ~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f------~VglltG-d 475 (1379)
.+-.+.+.++.++++++++|+||||||+++..+++.....+.+++++.|+|+++.|.++.+.+.+ .||...+ +
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~ 84 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGE 84 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccc
Confidence 45556778888899999999999999999999988776667799999999999999999997655 3554433 3
Q ss_pred cccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccC-CCCCccchhHH-HHHHHHcCccceEEEecccCCChHHHH
Q 039491 476 VSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVH-YVNDIERGVVW-EEVIIMLPRHINIVLLSATVPNTVEFA 553 (1379)
Q Consensus 476 v~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH-~l~d~~rG~v~-eeii~~Lp~~vqiIlLSATvpN~~efa 553 (1379)
.....+.+|+|+|+++|..++.+. ..+.++++|||||+| +..+.+++..+ .++...++++.|+|+||||+++.. |.
T Consensus 85 ~~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~-l~ 162 (819)
T TIGR01970 85 NKVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGER-LS 162 (819)
T ss_pred cccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHH-HH
Confidence 345566899999999999998764 468999999999999 46666665543 445566788999999999997643 66
Q ss_pred HHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCccccc
Q 039491 554 DWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGAR 633 (1379)
Q Consensus 554 ~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1379)
++++. ..++....+..|+++++.... ... .
T Consensus 163 ~~l~~-----~~vI~~~gr~~pVe~~y~~~~------~~~-----~---------------------------------- 192 (819)
T TIGR01970 163 SLLPD-----APVVESEGRSFPVEIRYLPLR------GDQ-----R---------------------------------- 192 (819)
T ss_pred HHcCC-----CcEEEecCcceeeeeEEeecc------hhh-----h----------------------------------
Confidence 66542 223444555566665543211 000 0
Q ss_pred ccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCc
Q 039491 634 AQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSS 713 (1379)
Q Consensus 634 ~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~ 713 (1379)
....+...+..+.....+.+|||++++++++.++..|.+.. .
T Consensus 193 -----------------------------------~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~-~-- 234 (819)
T TIGR01970 193 -----------------------------------LEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERL-D-- 234 (819)
T ss_pred -----------------------------------HHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhc-C--
Confidence 00111112222222235789999999999999999986510 0
Q ss_pred hhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCc
Q 039491 714 SEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPAR 793 (1379)
Q Consensus 714 ~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~ 793 (1379)
....|..+||+|++.+|..++..|++|..+|||||+++++|||+|++
T Consensus 235 ---------------------------------~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V 281 (819)
T TIGR01970 235 ---------------------------------SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGI 281 (819)
T ss_pred ---------------------------------CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCc
Confidence 01126779999999999999999999999999999999999999999
Q ss_pred eEEEccc----cccCCcc------cccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHHhc-CCCccccc
Q 039491 794 TVVFDNL----RKFDGRE------FRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVG-SATRLESQ 862 (1379)
Q Consensus 794 tvVI~~~----~kfDg~~------~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li~g-~~~~L~S~ 862 (1379)
++||+.. ..||... ..++|..+|.||+|||||.+ .|.||.+++.+ .+..+..- .|+-+.+.
T Consensus 282 ~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~---~G~cyrL~t~~-----~~~~l~~~~~PEI~r~~ 353 (819)
T TIGR01970 282 RVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLE---PGVCYRLWSEE-----QHQRLPAQDEPEILQAD 353 (819)
T ss_pred eEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCC---CCEEEEeCCHH-----HHHhhhcCCCcceeccC
Confidence 9999942 2354431 23568899999999999984 49999998643 33333332 34444444
Q ss_pred ccccHHHHHHHHhhccccHHHHHhhChhhHHhcCCcHHHHHHHHHHHcCCCCcccccCCcchHHHHHHHHHHH
Q 039491 863 FRLTYIMILHLLRVEELKVEDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTIECIKGEPAIEEYYDMYYEA 935 (1379)
Q Consensus 863 f~lty~miLnLlr~e~~~~e~~l~~SF~e~~~~~~~~~~~~~l~~~l~~~~~~i~c~~~~~~~~~~~~~~~~~ 935 (1379)
+ .+++|.+..++.-++.++ . |........++..+ ..|..+.+++.++.++.+...+.++
T Consensus 354 L---~~~~L~l~~~g~~~~~~~---~---~l~~P~~~~i~~a~-----~~L~~lgald~~~~lT~~G~~~~~l 412 (819)
T TIGR01970 354 L---SGLALELAQWGAKDPSDL---R---WLDAPPSVALAAAR-----QLLQRLGALDAQGRLTAHGKAMAAL 412 (819)
T ss_pred c---HHHHHHHHHcCCCChhhC---C---CCCCcCHHHHHHHH-----HHHHHCCCCCCCCCcCHHHHHHHhc
Confidence 3 378888877654444321 2 22222222233333 2334455555555666666655543
No 58
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.1e-32 Score=352.93 Aligned_cols=388 Identities=16% Similarity=0.171 Sum_probs=264.8
Q ss_pred HHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc------cEEEEecCc
Q 039491 403 NFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF------DVGLLTGDV 476 (1379)
Q Consensus 403 ~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f------~VglltGdv 476 (1379)
.+-.+.+.++.++++++++|+||||||+++.++++.......+++++.|+++++.|.++.+.+.+ .||..++..
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~ 87 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAE 87 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCc
Confidence 44556777888899999999999999999988887765445689999999999999999987654 566665544
Q ss_pred c-cCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCC-CCCccchh-HHHHHHHHcCccceEEEecccCCChHHHH
Q 039491 477 S-LRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHY-VNDIERGV-VWEEVIIMLPRHINIVLLSATVPNTVEFA 553 (1379)
Q Consensus 477 ~-in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~-l~d~~rG~-v~eeii~~Lp~~vqiIlLSATvpN~~efa 553 (1379)
+ ......|+|+||++|.+++.+. ..+.++++|||||+|. ..+.+... ...+++..++++.|+|+||||+++. .+.
T Consensus 88 ~~~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~-~l~ 165 (812)
T PRK11664 88 SKVGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDND-RLQ 165 (812)
T ss_pred cccCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHH-HHH
Confidence 3 5566789999999999998764 4689999999999996 33332221 2244556678889999999999764 466
Q ss_pred HHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCccccc
Q 039491 554 DWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGAR 633 (1379)
Q Consensus 554 ~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1379)
++++. ..++....+..|+++++.... ... .
T Consensus 166 ~~~~~-----~~~I~~~gr~~pV~~~y~~~~------~~~-----~---------------------------------- 195 (812)
T PRK11664 166 QLLPD-----APVIVSEGRSFPVERRYQPLP------AHQ-----R---------------------------------- 195 (812)
T ss_pred HhcCC-----CCEEEecCccccceEEeccCc------hhh-----h----------------------------------
Confidence 66541 123334455566665543211 000 0
Q ss_pred ccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCc
Q 039491 634 AQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSS 713 (1379)
Q Consensus 634 ~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~ 713 (1379)
....+...+..+.....+.+|||++++++++.+++.|......
T Consensus 196 -----------------------------------~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~-- 238 (812)
T PRK11664 196 -----------------------------------FDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVAS-- 238 (812)
T ss_pred -----------------------------------HHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhccC--
Confidence 0111112222222333578999999999999999999751000
Q ss_pred hhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCc
Q 039491 714 SEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPAR 793 (1379)
Q Consensus 714 ~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~ 793 (1379)
...|..+||+|++.+|+.++..|++|..+|||||+++++|||+|++
T Consensus 239 ----------------------------------~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V 284 (812)
T PRK11664 239 ----------------------------------DVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGI 284 (812)
T ss_pred ----------------------------------CceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCc
Confidence 0126779999999999999999999999999999999999999999
Q ss_pred eEEEccc----cccCCcc------cccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHHh-cCCCccccc
Q 039491 794 TVVFDNL----RKFDGRE------FRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIV-GSATRLESQ 862 (1379)
Q Consensus 794 tvVI~~~----~kfDg~~------~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li~-g~~~~L~S~ 862 (1379)
++||+.. ..||... ..++|..+|+||+|||||.+ .|.||.++++. .+..+.. ..|+-+.+.
T Consensus 285 ~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~---~G~cyrL~t~~-----~~~~l~~~~~PEI~r~d 356 (812)
T PRK11664 285 RLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLE---PGICLHLYSKE-----QAERAAAQSEPEILHSD 356 (812)
T ss_pred eEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCC---CcEEEEecCHH-----HHhhCccCCCCceeccc
Confidence 9999842 2366431 23467899999999999985 49999998643 3333333 234444554
Q ss_pred ccccHHHHHHHHhhccccHHHHHhhChhhHHhcCCcHHHHHHHHHHHcCCCCcccccCCcchHHHHHHHHHHH
Q 039491 863 FRLTYIMILHLLRVEELKVEDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTIECIKGEPAIEEYYDMYYEA 935 (1379)
Q Consensus 863 f~lty~miLnLlr~e~~~~e~~l~~SF~e~~~~~~~~~~~~~l~~~l~~~~~~i~c~~~~~~~~~~~~~~~~~ 935 (1379)
+. +++|.+...+.-++.++ .|........++..+ ..|..+.+++.++.++.+.+.+.++
T Consensus 357 L~---~~~L~l~~~g~~~~~~~------~~ld~P~~~~~~~A~-----~~L~~lgald~~g~lT~~G~~m~~l 415 (812)
T PRK11664 357 LS---GLLLELLQWGCHDPAQL------SWLDQPPAAALAAAK-----RLLQQLGALDGQGRLTARGRKMAAL 415 (812)
T ss_pred hH---HHHHHHHHcCCCCHHhC------CCCCCCCHHHHHHHH-----HHHHHCCCCCCCCCcCHHHHHHHhc
Confidence 44 78888877654444331 233333223333333 3334455555556666666555443
No 59
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-33 Score=327.72 Aligned_cols=312 Identities=22% Similarity=0.283 Sum_probs=247.9
Q ss_pred CCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc--------CCcEEEecchHHHHHHHHHHHhccc
Q 039491 397 FPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH--------CTRAVYTAPIKTISNQKYRDFSGKF 467 (1379)
Q Consensus 397 ~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~--------~~raIylsPtkaLsnQk~~~~~~~f 467 (1379)
.+|. |+|+|.+|++.+..+++++.|||||+|||++|.++|+..++. |-+++|++|+|+|+.|.|+++.++-
T Consensus 154 ~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~ 233 (593)
T KOG0344|consen 154 LGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYS 233 (593)
T ss_pred CCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcC
Confidence 7888 999999999999999999999999999999999999988732 4689999999999999999999865
Q ss_pred -c------EEEEecCcc--------cCCCCceeeecHHHHHHHHhcCc--ccCCCccEEEEeccCCCCCc-cchhHHHHH
Q 039491 468 -D------VGLLTGDVS--------LRPEASCLIMTTEILRSMLYRGA--DIIRDIEWVIFDEVHYVNDI-ERGVVWEEV 529 (1379)
Q Consensus 468 -~------VglltGdv~--------in~~a~IlV~TpEiL~smL~~~~--~~l~~v~lVI~DEaH~l~d~-~rG~v~eei 529 (1379)
+ +..+..... ....++++|.||-++...+..+. ..++.|.|+|+||++.+.+. .+-.+...+
T Consensus 234 ~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I 313 (593)
T KOG0344|consen 234 IDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADI 313 (593)
T ss_pred CCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHH
Confidence 2 222222211 11236899999999988887765 67899999999999999987 566666777
Q ss_pred HHHcC-ccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCc--CceEEEeecCceeeeccCcccchhhHHHHHHH
Q 039491 530 IIMLP-RHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPV--PLEHCLYYSGEFYKVCENEAFIPQGWKAAKDA 606 (1379)
Q Consensus 530 i~~Lp-~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~Rpv--pLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~ 606 (1379)
+.++. +++++-+||||++... .+|...++...+.++....... .+.+-+..+
T Consensus 314 ~sac~s~~i~~a~FSat~~~~V--EE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~----------------------- 368 (593)
T KOG0344|consen 314 YSACQSPDIRVALFSATISVYV--EEWAELIKSDLKRVIVGLRNSANETVDQELVFC----------------------- 368 (593)
T ss_pred HHHhcCcchhhhhhhccccHHH--HHHHHHhhccceeEEEecchhHhhhhhhhheee-----------------------
Confidence 77664 6789999999977655 4999888776666654422110 001100000
Q ss_pred HHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCC
Q 039491 607 YKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLL 686 (1379)
Q Consensus 607 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~ 686 (1379)
.....++..+.+.+...-..
T Consensus 369 ------------------------------------------------------------gse~~K~lA~rq~v~~g~~P 388 (593)
T KOG0344|consen 369 ------------------------------------------------------------GSEKGKLLALRQLVASGFKP 388 (593)
T ss_pred ------------------------------------------------------------ecchhHHHHHHHHHhccCCC
Confidence 01234455555555555567
Q ss_pred CEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHH
Q 039491 687 PVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVI 766 (1379)
Q Consensus 687 pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~V 766 (1379)
|++||+.|..+|.++...|.. +.. -.|++.||..++.+|+.+
T Consensus 389 P~lIfVQs~eRak~L~~~L~~--~~~------------------------------------i~v~vIh~e~~~~qrde~ 430 (593)
T KOG0344|consen 389 PVLIFVQSKERAKQLFEELEI--YDN------------------------------------INVDVIHGERSQKQRDET 430 (593)
T ss_pred CeEEEEecHHHHHHHHHHhhh--ccC------------------------------------cceeeEecccchhHHHHH
Confidence 999999999999999998851 111 127899999999999999
Q ss_pred HHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCC
Q 039491 767 EMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 767 e~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~ 841 (1379)
.+.|+.|.|.||+||+++++|+|+-+++.||+ ||. |-+..+|+||+||+||+|.. |.+|.+++++
T Consensus 431 ~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn----yD~----p~s~~syihrIGRtgRag~~--g~Aitfytd~ 495 (593)
T KOG0344|consen 431 MERFRIGKIWVLICTDLLARGIDFKGVNLVIN----YDF----PQSDLSYIHRIGRTGRAGRS--GKAITFYTDQ 495 (593)
T ss_pred HHHHhccCeeEEEehhhhhccccccCcceEEe----cCC----CchhHHHHHHhhccCCCCCC--cceEEEeccc
Confidence 99999999999999999999999999999999 999 89999999999999999975 9999999874
No 60
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-32 Score=341.64 Aligned_cols=331 Identities=21% Similarity=0.299 Sum_probs=266.9
Q ss_pred ccccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHH-----
Q 039491 367 QQQKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALAT----- 440 (1379)
Q Consensus 367 ~~~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l----- 440 (1379)
..+-.+|+.-++...++..+.. ++|+ ++|+|.+|||++..|++||.+|-||||||+.|.+++....
T Consensus 361 pkpv~sW~q~gl~~~il~tlkk--------l~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~ 432 (997)
T KOG0334|consen 361 PKPVTSWTQCGLSSKILETLKK--------LGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRP 432 (997)
T ss_pred CcccchHhhCCchHHHHHHHHH--------hcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCC
Confidence 3467899999999999988865 7777 9999999999999999999999999999999999998765
Q ss_pred ---hcCCcEEEecchHHHHHHHHHHHhccc-----cEEEEecCccc-------CCCCceeeecHHHHHHHHhcCcc---c
Q 039491 441 ---KHCTRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSL-------RPEASCLIMTTEILRSMLYRGAD---I 502 (1379)
Q Consensus 441 ---~~~~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~i-------n~~a~IlV~TpEiL~smL~~~~~---~ 502 (1379)
..|+.+||++||++|+.|++++++.+. .+...+|+..+ ...+.|+||||++..+++..++. .
T Consensus 433 ~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtn 512 (997)
T KOG0334|consen 433 LEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTN 512 (997)
T ss_pred hhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCcccc
Confidence 247899999999999999999988765 56667777653 33589999999999999876543 4
Q ss_pred CCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChHH-HHHHHhhhcCCcEEEEccCCCCcCceEEEe
Q 039491 503 IRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVE-FADWIGRTKQKKIRVTGTTKRPVPLEHCLY 581 (1379)
Q Consensus 503 l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~e-fa~wl~~~~~~~i~vi~t~~RpvpLe~~l~ 581 (1379)
++++.+||+||+++|+|..+.+..-.++..+++..|++++|||.|...+ ++.-+ ...|+.++....-.|
T Consensus 513 lrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~v---l~~Pveiiv~~~svV------- 582 (997)
T KOG0334|consen 513 LRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKV---LKKPVEIIVGGRSVV------- 582 (997)
T ss_pred ccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHh---hcCCeeEEEccceeE-------
Confidence 5666799999999999999988888899999999999999999998753 33332 234555433211111
Q ss_pred ecC--ceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCC
Q 039491 582 YSG--EFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGS 659 (1379)
Q Consensus 582 ~~~--~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~ 659 (1379)
..+ ..+.++.
T Consensus 583 ~k~V~q~v~V~~-------------------------------------------------------------------- 594 (997)
T KOG0334|consen 583 CKEVTQVVRVCA-------------------------------------------------------------------- 594 (997)
T ss_pred eccceEEEEEec--------------------------------------------------------------------
Confidence 000 0111110
Q ss_pred CCCcccccchhHHHHHHHHHHHh-CCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCch
Q 039491 660 QNNWGLRRSEVSIWLTLINKLSK-KSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLP 738 (1379)
Q Consensus 660 ~~~~~~~~~~~~~~~~Li~~L~~-~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lp 738 (1379)
....++..|+..|.. .+..++||||.+...|..+...|.+.++.+..
T Consensus 595 --------~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~s------------------------ 642 (997)
T KOG0334|consen 595 --------IENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDS------------------------ 642 (997)
T ss_pred --------CchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhh------------------------
Confidence 023334444444432 23589999999999999999999988887653
Q ss_pred hHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHH
Q 039491 739 QIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQ 818 (1379)
Q Consensus 739 qi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQ 818 (1379)
+|||.++.+|..+++.|++|.+++|+||+++|+|+|++...+||+ ||. |-....|+|
T Consensus 643 ---------------lHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn----yd~----pnh~edyvh 699 (997)
T KOG0334|consen 643 ---------------LHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVN----YDF----PNHYEDYVH 699 (997)
T ss_pred ---------------hcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEE----ccc----chhHHHHHH
Confidence 899999999999999999999999999999999999999999999 999 777888999
Q ss_pred HhcccCCCCCCCcEEEEEEecC
Q 039491 819 MAGRAGRRGLDKIGTVVVLCRD 840 (1379)
Q Consensus 819 maGRAGRrG~d~~G~vIil~~~ 840 (1379)
|+||+||.|.. |.+++|..+
T Consensus 700 R~gRTgragrk--g~AvtFi~p 719 (997)
T KOG0334|consen 700 RVGRTGRAGRK--GAAVTFITP 719 (997)
T ss_pred HhcccccCCcc--ceeEEEeCh
Confidence 99999999975 899988876
No 61
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=3.8e-33 Score=325.74 Aligned_cols=346 Identities=16% Similarity=0.165 Sum_probs=279.0
Q ss_pred cccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh---cCCc
Q 039491 370 KEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK---HCTR 445 (1379)
Q Consensus 370 ~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~---~~~r 445 (1379)
...|+.+.+...++..++. -+|. |+++|..|||.+..+-++||.|..|+|||+||..+....+. ....
T Consensus 24 ~~~fe~l~l~r~vl~glrr--------n~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q 95 (980)
T KOG4284|consen 24 TPGFEQLALWREVLLGLRR--------NAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQ 95 (980)
T ss_pred CCCHHHHHHHHHHHHHHHh--------hcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcce
Confidence 3467777777777777665 5777 99999999999999999999999999999999888888773 4578
Q ss_pred EEEecchHHHHHHHHHHHhccc------cEEEEecCcccC------CCCceeeecHHHHHHHHhcCcccCCCccEEEEec
Q 039491 446 AVYTAPIKTISNQKYRDFSGKF------DVGLLTGDVSLR------PEASCLIMTTEILRSMLYRGADIIRDIEWVIFDE 513 (1379)
Q Consensus 446 aIylsPtkaLsnQk~~~~~~~f------~VglltGdv~in------~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DE 513 (1379)
++|++|||+|+.|+...+.+.. ++.++.|+.... .+..|+|+||+++..+...+......++++|+||
T Consensus 96 ~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDE 175 (980)
T KOG4284|consen 96 KVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDE 175 (980)
T ss_pred eEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEecc
Confidence 9999999999999988777653 788899987743 3578999999999999988999999999999999
Q ss_pred cCCCCC-ccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCc--CceEEEeecCceeeec
Q 039491 514 VHYVND-IERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPV--PLEHCLYYSGEFYKVC 590 (1379)
Q Consensus 514 aH~l~d-~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~Rpv--pLe~~l~~~~~l~~i~ 590 (1379)
|+.+.+ ..+...+..+|..||...|++.+|||.|... .+.+...++++..|......++ -|.+|++...
T Consensus 176 ADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nL--dn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~------ 247 (980)
T KOG4284|consen 176 ADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNL--DNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKC------ 247 (980)
T ss_pred HHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhH--HHHHHHHhcccceeecccCCceeechhheeeecc------
Confidence 999987 5577778888899999999999999988643 4666667777777766555544 2445544322
Q ss_pred cCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchh
Q 039491 591 ENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEV 670 (1379)
Q Consensus 591 d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1379)
... +-. .-..
T Consensus 248 s~n-----nsv-----------------------------------------------------------------eemr 257 (980)
T KOG4284|consen 248 SPN-----NSV-----------------------------------------------------------------EEMR 257 (980)
T ss_pred CCc-----chH-----------------------------------------------------------------HHHH
Confidence 000 000 0012
Q ss_pred HHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccc
Q 039491 671 SIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRG 750 (1379)
Q Consensus 671 ~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rG 750 (1379)
-++..|-..+..-...++||||.+..+|+-+|..|...|+.+.
T Consensus 258 lklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~------------------------------------- 300 (980)
T KOG4284|consen 258 LKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVT------------------------------------- 300 (980)
T ss_pred HHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeE-------------------------------------
Confidence 2344455555566677899999999999999999999887754
Q ss_pred eEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCC
Q 039491 751 IAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDK 830 (1379)
Q Consensus 751 IavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~ 830 (1379)
+..|.|.+.+|..+...++.-.++|||+|+..|+|||-|.+++||+ .|. |.+-..|.||+|||||.|.
T Consensus 301 --~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVN----iD~----p~d~eTY~HRIGRAgRFG~-- 368 (980)
T KOG4284|consen 301 --FISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVN----IDA----PADEETYFHRIGRAGRFGA-- 368 (980)
T ss_pred --EeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEe----cCC----CcchHHHHHHhhhcccccc--
Confidence 4789999999999999999999999999999999999999999999 888 9999999999999999995
Q ss_pred cEEEEEEecCCCCCHHHHHHH
Q 039491 831 IGTVVVLCRDEIPGESDLKHI 851 (1379)
Q Consensus 831 ~G~vIil~~~~~~~~~~l~~l 851 (1379)
.|.+|.+|.++. +...+..|
T Consensus 369 ~G~aVT~~~~~~-e~~~f~~m 388 (980)
T KOG4284|consen 369 HGAAVTLLEDER-ELKGFTAM 388 (980)
T ss_pred cceeEEEeccch-hhhhhHHH
Confidence 499999998764 33444444
No 62
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.5e-32 Score=328.56 Aligned_cols=319 Identities=21% Similarity=0.275 Sum_probs=240.0
Q ss_pred hccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEE
Q 039491 394 ALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGL 471 (1379)
Q Consensus 394 a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~Vgl 471 (1379)
...|+|. +++-|.++|.++.+|+++|+..|||+||++||.+|.+.. .+-+|+++|..+|...+.+.++... .+..
T Consensus 10 ~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~ 86 (590)
T COG0514 10 KQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---EGLTLVVSPLISLMKDQVDQLEAAGIRAAY 86 (590)
T ss_pred HHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---CCCEEEECchHHHHHHHHHHHHHcCceeeh
Confidence 3458888 999999999999999999999999999999998887665 4479999999999999999999987 6666
Q ss_pred EecCccc-----------CCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCcc--chhHHHHHH---HHcCc
Q 039491 472 LTGDVSL-----------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIE--RGVVWEEVI---IMLPR 535 (1379)
Q Consensus 472 ltGdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~--rG~v~eeii---~~Lp~ 535 (1379)
+.+..+. ..+.++|..+||+|.+--......--.+.+++||||||+.+|+ |.+.+..+- ..+|
T Consensus 87 lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~- 165 (590)
T COG0514 87 LNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP- 165 (590)
T ss_pred hhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCC-
Confidence 6555431 2346899999998854221111124478899999999999985 555555553 3455
Q ss_pred cceEEEecccCCChH--HHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccc
Q 039491 536 HINIVLLSATVPNTV--EFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLS 613 (1379)
Q Consensus 536 ~vqiIlLSATvpN~~--efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~ 613 (1379)
++.+++||||-+... ++..-++. ..+...+.+..||.- .|.++...
T Consensus 166 ~~p~~AlTATA~~~v~~DI~~~L~l--~~~~~~~~sfdRpNi----------~~~v~~~~-------------------- 213 (590)
T COG0514 166 NPPVLALTATATPRVRDDIREQLGL--QDANIFRGSFDRPNL----------ALKVVEKG-------------------- 213 (590)
T ss_pred CCCEEEEeCCCChHHHHHHHHHhcC--CCcceEEecCCCchh----------hhhhhhcc--------------------
Confidence 789999999976553 44444442 122233344444411 00000000
Q ss_pred cccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeC
Q 039491 614 AASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCF 693 (1379)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~ 693 (1379)
....... .+..+......+.||||.
T Consensus 214 ------------------------------------------------------~~~~q~~-fi~~~~~~~~~~GIIYc~ 238 (590)
T COG0514 214 ------------------------------------------------------EPSDQLA-FLATVLPQLSKSGIIYCL 238 (590)
T ss_pred ------------------------------------------------------cHHHHHH-HHHhhccccCCCeEEEEe
Confidence 0011111 222123455678999999
Q ss_pred ChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCC
Q 039491 694 SKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRG 773 (1379)
Q Consensus 694 Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G 773 (1379)
||+.||.+|+.|...|+. ++.+||||...+|+.+++.|..+
T Consensus 239 sRk~~E~ia~~L~~~g~~---------------------------------------a~~YHaGl~~~eR~~~q~~f~~~ 279 (590)
T COG0514 239 TRKKVEELAEWLRKNGIS---------------------------------------AGAYHAGLSNEERERVQQAFLND 279 (590)
T ss_pred eHHhHHHHHHHHHHCCCc---------------------------------------eEEecCCCCHHHHHHHHHHHhcC
Confidence 999999999999886655 45699999999999999999999
Q ss_pred CeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHHh
Q 039491 774 VVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIV 853 (1379)
Q Consensus 774 ~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li~ 853 (1379)
.++|+|||..|.||||-|+++.||| ||. |.+...|.|-+|||||.|.. ..||+++.+. +......++.
T Consensus 280 ~~~iiVAT~AFGMGIdKpdVRfViH----~~l----P~s~EsYyQE~GRAGRDG~~--a~aill~~~~--D~~~~~~~i~ 347 (590)
T COG0514 280 EIKVMVATNAFGMGIDKPDVRFVIH----YDL----PGSIESYYQETGRAGRDGLP--AEAILLYSPE--DIRWQRYLIE 347 (590)
T ss_pred CCcEEEEeccccCccCCCCceEEEE----ecC----CCCHHHHHHHHhhccCCCCc--ceEEEeeccc--cHHHHHHHHH
Confidence 9999999999999999999999999 999 99999999999999999976 8899998765 4555666665
Q ss_pred c
Q 039491 854 G 854 (1379)
Q Consensus 854 g 854 (1379)
.
T Consensus 348 ~ 348 (590)
T COG0514 348 Q 348 (590)
T ss_pred h
Confidence 3
No 63
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.98 E-value=9e-31 Score=323.16 Aligned_cols=315 Identities=13% Similarity=0.092 Sum_probs=217.3
Q ss_pred CCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcC-CcEEEecchHHHHHHHHHHHhccc-----cEEE
Q 039491 398 PFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHC-TRAVYTAPIKTISNQKYRDFSGKF-----DVGL 471 (1379)
Q Consensus 398 pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~-~raIylsPtkaLsnQk~~~~~~~f-----~Vgl 471 (1379)
.++|+++|++|++.+..+++.+++||||+|||+++...+...+..+ .+++|++||++|++|+.++|++.. .++.
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~ 191 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHK 191 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeE
Confidence 3679999999999999999999999999999998765444434444 499999999999999999999864 3444
Q ss_pred EecCcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChHH
Q 039491 472 LTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVE 551 (1379)
Q Consensus 472 ltGdv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~e 551 (1379)
+.|+.....+.+|+|+|++.+.++. ...++++++||+||||++.. ..++.++..+++..++++||||+.+...
T Consensus 192 i~~g~~~~~~~~I~VaT~qsl~~~~---~~~~~~~~~iIvDEaH~~~~----~~~~~il~~~~~~~~~lGLTATp~~~~~ 264 (501)
T PHA02558 192 IYSGTAKDTDAPIVVSTWQSAVKQP---KEWFDQFGMVIVDECHLFTG----KSLTSIITKLDNCKFKFGLTGSLRDGKA 264 (501)
T ss_pred EecCcccCCCCCEEEeeHHHHhhch---hhhccccCEEEEEchhcccc----hhHHHHHHhhhccceEEEEeccCCCccc
Confidence 5555555566899999999986543 23578999999999999974 4577888888777889999999875431
Q ss_pred ----HHHHHhhhcCCcEEEEccC-----CCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCC
Q 039491 552 ----FADWIGRTKQKKIRVTGTT-----KRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSY 622 (1379)
Q Consensus 552 ----fa~wl~~~~~~~i~vi~t~-----~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~ 622 (1379)
+..++|. ..+.+... ...++++....... +.-.+........|......+..
T Consensus 265 ~~~~~~~~fG~----i~~~v~~~~li~~g~l~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~l~~------------- 325 (501)
T PHA02558 265 NILQYVGLFGD----IFKPVTTSQLMEEGQVTDLKINSIFLR--YPDEDRVKLKGEDYQEEIKYITS------------- 325 (501)
T ss_pred cHHHHHHhhCC----ceEEecHHHHHhCCCcCCceEEEEecc--CCHHHhhhhcccchHHHHHHHhc-------------
Confidence 2223331 11111110 01111211110000 00000000000001110000000
Q ss_pred CCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHH
Q 039491 623 AGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLA 702 (1379)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA 702 (1379)
.......+..++..+.. .+.+++|||.+.++|+.++
T Consensus 326 -------------------------------------------~~~Rn~~I~~~~~~~~~-~~~~~lV~~~~~~h~~~L~ 361 (501)
T PHA02558 326 -------------------------------------------HTKRNKWIANLALKLAK-KGENTFVMFKYVEHGKPLY 361 (501)
T ss_pred -------------------------------------------cHHHHHHHHHHHHHHHh-cCCCEEEEEEEHHHHHHHH
Confidence 00012233445544443 3467888889999999999
Q ss_pred HHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEec-
Q 039491 703 DGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFST- 781 (1379)
Q Consensus 703 ~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVAT- 781 (1379)
+.|.+.+.. +.++||+|+..+|+.+++.|++|...|||||
T Consensus 362 ~~L~~~g~~---------------------------------------v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~ 402 (501)
T PHA02558 362 EMLKKVYDK---------------------------------------VYYVSGEVDTEDRNEMKKIAEGGKGIIIVASY 402 (501)
T ss_pred HHHHHcCCC---------------------------------------EEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEc
Confidence 999875442 5679999999999999999999999999999
Q ss_pred ccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCC
Q 039491 782 ETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLD 829 (1379)
Q Consensus 782 etla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d 829 (1379)
+++++|+|+|.+++||. +++ +.+...|+||+||++|.+..
T Consensus 403 ~~l~eG~Dip~ld~vIl----~~p----~~s~~~~~QriGR~~R~~~~ 442 (501)
T PHA02558 403 GVFSTGISIKNLHHVIF----AHP----SKSKIIVLQSIGRVLRKHGS 442 (501)
T ss_pred ceeccccccccccEEEE----ecC----CcchhhhhhhhhccccCCCC
Confidence 89999999999999997 566 66889999999999998764
No 64
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.98 E-value=8.1e-31 Score=329.31 Aligned_cols=302 Identities=18% Similarity=0.174 Sum_probs=204.2
Q ss_pred CCCCCCHHHHHHHHHHHCCC-cEEEEcCCCccHHHHHH---HHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-----
Q 039491 397 FPFELDNFQKEAIYYLENGD-SVFVAAHTSAGKTVVAE---YAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF----- 467 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~L~~g~-sVlV~ApTGSGKTlvae---~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f----- 467 (1379)
.+|+|+|||+++++.+..|+ +++++||||||||.++. +++........++||++|+|+|++|.++.+.+..
T Consensus 12 ~G~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~ 91 (844)
T TIGR02621 12 HGYSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPD 91 (844)
T ss_pred hCCCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhcc
Confidence 68889999999999999998 57888999999998543 2221111224577789999999999988776543
Q ss_pred -----------------------cEEEEecCcccCC-------CCceeeecHHHHHHHHh-cC-----------cccCCC
Q 039491 468 -----------------------DVGLLTGDVSLRP-------EASCLIMTTEILRSMLY-RG-----------ADIIRD 505 (1379)
Q Consensus 468 -----------------------~VglltGdv~in~-------~a~IlV~TpEiL~smL~-~~-----------~~~l~~ 505 (1379)
++..++|+...++ ..+|+|+|++.+.+-+. +| .-.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~ 171 (844)
T TIGR02621 92 VPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQ 171 (844)
T ss_pred cchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhcc
Confidence 3567799987643 46899999655533211 10 013688
Q ss_pred ccEEEEeccCCCCCccchhHHHHHHHHc--Ccc---ceEEEecccCCChH-HHHHHHhhhcCCcEEEEccCCCCc--Cce
Q 039491 506 IEWVIFDEVHYVNDIERGVVWEEVIIML--PRH---INIVLLSATVPNTV-EFADWIGRTKQKKIRVTGTTKRPV--PLE 577 (1379)
Q Consensus 506 v~lVI~DEaH~l~d~~rG~v~eeii~~L--p~~---vqiIlLSATvpN~~-efa~wl~~~~~~~i~vi~t~~Rpv--pLe 577 (1379)
+.++|||||| .+..+...++.++..+ ++. .|+++||||++... +++..+. ..+..+.....+.. .+.
T Consensus 172 v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~---~~p~~i~V~~~~l~a~ki~ 246 (844)
T TIGR02621 172 DALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLS---AEDYKHPVLKKRLAAKKIV 246 (844)
T ss_pred ceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHc---cCCceeecccccccccceE
Confidence 9999999999 4567888888888864 442 69999999998643 3333332 22222111111110 011
Q ss_pred EEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCC
Q 039491 578 HCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSG 657 (1379)
Q Consensus 578 ~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~ 657 (1379)
+++ . ..+.
T Consensus 247 q~v-~------v~~e----------------------------------------------------------------- 254 (844)
T TIGR02621 247 KLV-P------PSDE----------------------------------------------------------------- 254 (844)
T ss_pred EEE-e------cChH-----------------------------------------------------------------
Confidence 110 0 0000
Q ss_pred CCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCc
Q 039491 658 GSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNL 737 (1379)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~l 737 (1379)
......+..+...+ .....++||||+|++.|+.++..|.+.+
T Consensus 255 ---------~Kl~~lv~~L~~ll-~e~g~~vLVF~NTv~~Aq~L~~~L~~~g---------------------------- 296 (844)
T TIGR02621 255 ---------KFLSTMVKELNLLM-KDSGGAILVFCRTVKHVRKVFAKLPKEK---------------------------- 296 (844)
T ss_pred ---------HHHHHHHHHHHHHH-hhCCCcEEEEECCHHHHHHHHHHHHhcC----------------------------
Confidence 00011122222222 3345789999999999999999987532
Q ss_pred hhHHHHHHhhccceEEecCCCChHHHH-----HHHHHhcC----CC-------eeEEEecccccccCCCCCceEEEcccc
Q 039491 738 PQIVRVQSLLRRGIAIHHAGLLPIVKE-----VIEMLFCR----GV-------VKVLFSTETFAMGVNAPARTVVFDNLR 801 (1379)
Q Consensus 738 pqi~~l~~lL~rGIavhHggL~~~~Re-----~Ve~lF~~----G~-------ikVLVATetla~GINiPa~tvVI~~~~ 801 (1379)
+..+||+|.+.+|+ .++..|++ |. .+|||||+++++|||++. ++||+
T Consensus 297 -------------~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~--- 359 (844)
T TIGR02621 297 -------------FELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVC--- 359 (844)
T ss_pred -------------CeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEE---
Confidence 34699999999999 78889987 54 789999999999999998 66665
Q ss_pred ccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEE
Q 039491 802 KFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVL 837 (1379)
Q Consensus 802 kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil 837 (1379)
+.. | ...|+||+||+||.|....+.++++
T Consensus 360 -d~a----P--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 360 -DLA----P--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred -CCC----C--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 333 3 5799999999999998644444444
No 65
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.98 E-value=5.9e-31 Score=312.15 Aligned_cols=294 Identities=17% Similarity=0.185 Sum_probs=201.1
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHh--cCCcEEEecchHHHHHHHHHHHhccc--cEEEEecCccc--------------
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATK--HCTRAVYTAPIKTISNQKYRDFSGKF--DVGLLTGDVSL-------------- 478 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~--~~~raIylsPtkaLsnQk~~~~~~~f--~VglltGdv~i-------------- 478 (1379)
+++|+||||||||.+|+.+++..+. .+.+++|++|+++|++|++++++..| .+++++|+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 4899999999999999999988773 45799999999999999999999998 67877765431
Q ss_pred -------C----CCCceeeecHHHHHHHHhcCc--cc--C--CCccEEEEeccCCCCCccchhHHHHHHHHcC-ccceEE
Q 039491 479 -------R----PEASCLIMTTEILRSMLYRGA--DI--I--RDIEWVIFDEVHYVNDIERGVVWEEVIIMLP-RHINIV 540 (1379)
Q Consensus 479 -------n----~~a~IlV~TpEiL~smL~~~~--~~--l--~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp-~~vqiI 540 (1379)
+ ..++|+|+||+.+...+.++. .. + -..++|||||+|.+.+..++. +..++..++ ..+|++
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcCCCEE
Confidence 0 135799999999988776521 10 1 123799999999999876665 444444444 468999
Q ss_pred EecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCC
Q 039491 541 LLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATG 620 (1379)
Q Consensus 541 lLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~ 620 (1379)
+||||+|+ .+.+|+....... .. ...+....-......+.....
T Consensus 160 ~~SATlp~--~l~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~---------------------------- 203 (358)
T TIGR01587 160 LMSATLPK--FLKEYAEKIGYVE-----FN-EPLDLKEERRFERHRFIKIES---------------------------- 203 (358)
T ss_pred EEecCchH--HHHHHHhcCCCcc-----cc-cCCCCccccccccccceeecc----------------------------
Confidence 99999984 3445554321110 00 000000000000000000000
Q ss_pred CCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHH
Q 039491 621 SYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDK 700 (1379)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~ 700 (1379)
........+..+++.+. ...++||||++++.|+.
T Consensus 204 --------------------------------------------~~~~~~~~l~~l~~~~~--~~~~~lVf~~t~~~~~~ 237 (358)
T TIGR01587 204 --------------------------------------------DKVGEISSLERLLEFIK--KGGKIAIIVNTVDRAQE 237 (358)
T ss_pred --------------------------------------------ccccCHHHHHHHHHHhh--CCCeEEEEECCHHHHHH
Confidence 00001223344444433 34799999999999999
Q ss_pred HHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHH----HHHhcCCCee
Q 039491 701 LADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVI----EMLFCRGVVK 776 (1379)
Q Consensus 701 lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~V----e~lF~~G~ik 776 (1379)
++..|.+.+.. ..+..+||+|++.+|+.+ ...|++|..+
T Consensus 238 ~~~~L~~~~~~-------------------------------------~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ 280 (358)
T TIGR01587 238 FYQQLKENAPE-------------------------------------EEIMLLHSRFTEKDRAKKEAELLEEMKKNEKF 280 (358)
T ss_pred HHHHHHhhcCC-------------------------------------CeEEEEECCCCHHHHHHHHHHHHHHhcCCCCe
Confidence 99999764321 137789999999999764 7889999999
Q ss_pred EEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCC--cEEEEEEecCC
Q 039491 777 VLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDK--IGTVVVLCRDE 841 (1379)
Q Consensus 777 VLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~--~G~vIil~~~~ 841 (1379)
|||||+++++|||+|. ++||+ ++ .++.+|+||+||+||.|... .|.++++....
T Consensus 281 ilvaT~~~~~GiDi~~-~~vi~----~~------~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 281 VIVATQVIEASLDISA-DVMIT----EL------APIDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred EEEECcchhceeccCC-CEEEE----cC------CCHHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 9999999999999984 55555 33 34789999999999998753 35888887543
No 66
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=4.6e-30 Score=298.25 Aligned_cols=404 Identities=18% Similarity=0.181 Sum_probs=246.9
Q ss_pred CCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc-CCcEEEecchHHHHHHHHHHHhccc-----cEEEE
Q 039491 399 FELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH-CTRAVYTAPIKTISNQKYRDFSGKF-----DVGLL 472 (1379)
Q Consensus 399 FeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~-~~raIylsPtkaLsnQk~~~~~~~f-----~Vgll 472 (1379)
.+++.||.......+.+ |++|+.|||-|||++|.+.|+..++. +.++|+++|||-|+.|+++.+++.+ .++.+
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~l 92 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAAL 92 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeee
Confidence 35889999988777655 89999999999999999999988754 3479999999999999999999987 68999
Q ss_pred ecCcccC------CCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccC
Q 039491 473 TGDVSLR------PEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATV 546 (1379)
Q Consensus 473 tGdv~in------~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATv 546 (1379)
||.+..+ ..+.|+|+||..+.|-|..|...+.++.++||||||+-....-.+.+-.-...-..+..+++||||+
T Consensus 93 tGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASP 172 (542)
T COG1111 93 TGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASP 172 (542)
T ss_pred cCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCC
Confidence 9998854 3589999999999999999999999999999999999754322222222233345678999999998
Q ss_pred CChH-HHHHHHhhhcCCcEEEEccCCCCcCceEEEeecC-ceeeeccCcc------------------------------
Q 039491 547 PNTV-EFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSG-EFYKVCENEA------------------------------ 594 (1379)
Q Consensus 547 pN~~-efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~-~l~~i~d~~~------------------------------ 594 (1379)
.+.. .+.+-+....-..+.|... ..+- +..|+.... +..++.-...
T Consensus 173 Gs~~ekI~eV~~nLgIe~vevrTE-~d~D-V~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~ 250 (542)
T COG1111 173 GSDLEKIQEVVENLGIEKVEVRTE-EDPD-VRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSP 250 (542)
T ss_pred CCCHHHHHHHHHhCCcceEEEecC-CCcc-HHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCc
Confidence 8765 4555554443344444322 2211 111111000 0000000000
Q ss_pred cchhhHHHHH-HHHHhhccccccC-------------CCC-CCCCCCCCcccc---cccccCCCCCC-CCCC-------c
Q 039491 595 FIPQGWKAAK-DAYKRKNLSAASG-------------ATG-SYAGASSPRDGA---RAQKREHPNRG-KQNK-------H 648 (1379)
Q Consensus 595 f~~~~~~~~~-~~l~~~~~~~~~~-------------~~~-~~~~~~~~~~~~---~~~~~~~~~~g-r~~~-------~ 648 (1379)
.....+..+. ..+....+.+... +.. ..-.+....... .........+| +... .
T Consensus 251 ~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~ 330 (542)
T COG1111 251 VSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYF 330 (542)
T ss_pred ccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhh
Confidence 0000000000 0000000000000 000 000000000000 00000000000 0000 0
Q ss_pred ccccc-ccCCCCCCCcccccchhHHHHHHH-HHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHH
Q 039491 649 SVVGI-KNSGGSQNNWGLRRSEVSIWLTLI-NKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKA 726 (1379)
Q Consensus 649 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~Li-~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~ 726 (1379)
.+... ..... ..+..-+....+..++ +.+.+.+..++|||+..|..++.+++.|.+.+..... .|
T Consensus 331 ~~al~~~~~~~---~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~------rF---- 397 (542)
T COG1111 331 KRALRLLIRAD---ESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARV------RF---- 397 (542)
T ss_pred HHHHHHHHHhc---cccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCccee------EE----
Confidence 00000 00000 0000001122333333 3445566789999999999999999999887655420 01
Q ss_pred hhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCc
Q 039491 727 FSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGR 806 (1379)
Q Consensus 727 ~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~ 806 (1379)
+...++ -+-.||++.++..++..|++|..+|||||++.++|+|+|.+++||. |+.
T Consensus 398 ---iGQa~r-----------------~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif----YEp- 452 (542)
T COG1111 398 ---IGQASR-----------------EGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIF----YEP- 452 (542)
T ss_pred ---eecccc-----------------ccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEE----ecC-
Confidence 111111 2558999999999999999999999999999999999999999999 998
Q ss_pred ccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHH
Q 039491 807 EFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLK 849 (1379)
Q Consensus 807 ~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~ 849 (1379)
-.|+..++||.||+||.- .|.++++...+.-+...+.
T Consensus 453 ---vpSeIR~IQR~GRTGR~r---~Grv~vLvt~gtrdeayy~ 489 (542)
T COG1111 453 ---VPSEIRSIQRKGRTGRKR---KGRVVVLVTEGTRDEAYYY 489 (542)
T ss_pred ---CcHHHHHHHhhCccccCC---CCeEEEEEecCchHHHHHH
Confidence 788999999999999973 3999999887643444433
No 67
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.4e-31 Score=300.48 Aligned_cols=329 Identities=20% Similarity=0.226 Sum_probs=263.3
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcC----
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHC---- 443 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~---- 443 (1379)
..-.|..+++...+..++++ -+|. |+|+|++.|+.++.+++++..|-||||||.+|.++++..++..
T Consensus 19 g~g~fqsmgL~~~v~raI~k--------kg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g 90 (529)
T KOG0337|consen 19 GSGGFQSMGLDYKVLRAIHK--------KGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTG 90 (529)
T ss_pred CCCCccccCCCHHHHHHHHH--------hhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccc
Confidence 35689999999999999987 5777 9999999999999999999999999999999999999999654
Q ss_pred CcEEEecchHHHHHHHHHHHhccc-----cEEEEecCcc-------cCCCCceeeecHHHHHHHHhcCcccCCCccEEEE
Q 039491 444 TRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVS-------LRPEASCLIMTTEILRSMLYRGADIIRDIEWVIF 511 (1379)
Q Consensus 444 ~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~-------in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~ 511 (1379)
.|+++++|+++|+.|.++.+++.. +..+++|+.+ ++.+.+|+|+||+++..+.-.-...++.|++|||
T Consensus 91 ~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVf 170 (529)
T KOG0337|consen 91 LRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVF 170 (529)
T ss_pred cceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeee
Confidence 599999999999999998888765 5666667655 4667899999999998776665567899999999
Q ss_pred eccCCCCCccchhHHHHHHHHcCccceEEEecccCCChH-HHHHHHhhhcCCcEEEEcc--CCCCcCceEEEeecCceee
Q 039491 512 DEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTV-EFADWIGRTKQKKIRVTGT--TKRPVPLEHCLYYSGEFYK 588 (1379)
Q Consensus 512 DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~-efa~wl~~~~~~~i~vi~t--~~RpvpLe~~l~~~~~l~~ 588 (1379)
||++.+...++.....+++..+|...|.++||||+|+.. +|+.- | ...|+.|... .+-.-.+++..+
T Consensus 171 dEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~faka-G--l~~p~lVRldvetkise~lk~~f~------- 240 (529)
T KOG0337|consen 171 DEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKA-G--LVPPVLVRLDVETKISELLKVRFF------- 240 (529)
T ss_pred hhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHc-c--CCCCceEEeehhhhcchhhhhhee-------
Confidence 999999998888999999999999999999999999863 55542 1 1222222100 000000000000
Q ss_pred eccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccc
Q 039491 589 VCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRS 668 (1379)
Q Consensus 589 i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1379)
...
T Consensus 241 -----------------------------------------------------------------------------~~~ 243 (529)
T KOG0337|consen 241 -----------------------------------------------------------------------------RVR 243 (529)
T ss_pred -----------------------------------------------------------------------------eec
Confidence 001
Q ss_pred hhHHHHHHHHHHHhCC-CCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhh
Q 039491 669 EVSIWLTLINKLSKKS-LLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLL 747 (1379)
Q Consensus 669 ~~~~~~~Li~~L~~~~-~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL 747 (1379)
..++...|+..+.... ..+++|||.++.+++.+...|...++...
T Consensus 244 ~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s---------------------------------- 289 (529)
T KOG0337|consen 244 KAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGS---------------------------------- 289 (529)
T ss_pred cHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCcc----------------------------------
Confidence 2334445555554432 24799999999999999999887665543
Q ss_pred ccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCC
Q 039491 748 RRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRG 827 (1379)
Q Consensus 748 ~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG 827 (1379)
..+|.|.+..|..-...|..+...+||.|+++++|+|+|-..-||+ ||. |..+.-|+||+||+.|+|
T Consensus 290 -----~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvin----yd~----p~~~klFvhRVgr~arag 356 (529)
T KOG0337|consen 290 -----DIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVIN----YDF----PPDDKLFVHRVGRVARAG 356 (529)
T ss_pred -----ccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccccc----ccC----CCCCceEEEEecchhhcc
Confidence 4789999999999999999999999999999999999999999999 999 889999999999999999
Q ss_pred CCCcEEEEEEecCC
Q 039491 828 LDKIGTVVVLCRDE 841 (1379)
Q Consensus 828 ~d~~G~vIil~~~~ 841 (1379)
.. |++|-++.++
T Consensus 357 rt--g~aYs~V~~~ 368 (529)
T KOG0337|consen 357 RT--GRAYSLVAST 368 (529)
T ss_pred cc--ceEEEEEecc
Confidence 75 7877766543
No 68
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=99.97 E-value=3.4e-31 Score=302.08 Aligned_cols=253 Identities=32% Similarity=0.487 Sum_probs=204.5
Q ss_pred HHHHhhChhhHHhcCCcHHHHHHHHHHHcCCCCcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhcCCCce
Q 039491 882 EDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTIECIKGEPAIEEYYDMYYEAEKYNNQITEAFMQS--AHQFLMPGRV 959 (1379)
Q Consensus 882 e~~l~~SF~e~~~~~~~~~~~~~l~~~l~~~~~~i~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~Grl 959 (1379)
|+||+|||+|||+++.+|++++++ ++++++++.+. ...+.++.+||+++.++..++++++..++++ ++++|+||||
T Consensus 1 E~mikrSF~qfq~~~~lP~~~~~~-~~~e~~~~~i~-~~~~~~v~~y~~l~~~l~~~~~~~~~~i~~p~~~~~fL~~GRl 78 (268)
T PF13234_consen 1 EYMIKRSFSQFQNQRKLPELEKKL-KELEEELDAIK-IEDEEDVEEYYDLRQELEELRKELRKIITSPKYCLPFLQPGRL 78 (268)
T ss_dssp HHHHHCSHHHHHHHHHHHHHHHHH-HHHHHHHHCS---TTCTCCHHHHHHHHHHHHHHHHHHHHHCTCCCHHHHS-TTEE
T ss_pred ChhHHHhHHHHcccccCHHHHHHH-HHHHHHHHhcc-cccHhHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHhCCCCCE
Confidence 789999999999999999999999 99999999988 4668999999999999999999999998888 9999999999
Q ss_pred EEEecCCCCCcceEEEEecCC------------CCCCceEEEEEcCCCCCCcccccCCCCCCCCCCcccccCCCCCceeE
Q 039491 960 LFVKSQTGQDHLLGAVVKAPS------------ANNKEYIVMLLKPDLPSASETSLDKKSGDFSEGYFVIPKSKRGLEEE 1027 (1379)
Q Consensus 960 v~~~~~~~~~~~~gv~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1027 (1379)
|+|++ ++.+|+||||+++.. .....|+|++|++|......... ....+..+.|+..+.++.+.+
T Consensus 79 V~v~~-~~~~~~wgvvv~~~~~~~~~~~~~~~~~~~~~~vVdvL~~~~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~v 154 (268)
T PF13234_consen 79 VVVRD-GDRDFGWGVVVNFAKKSNPKGNLGSSSSKEKSYVVDVLLPCSPDSKSAKN---SSDLPEPVKPCSPGEKGEMEV 154 (268)
T ss_dssp EEEEE-TTCEEEEEEEEEEEE---SS--TT-SSSTCCCEEEEEECCCEETTS-CCG---TTTGGCTS-BS-TT--EEEEE
T ss_pred EEEec-CCCccceeEEEeccccccccccccccCCCCCcEEEEEEeecccccccccc---ccCCCCCCCCCCCCCCCeEEE
Confidence 99998 778899999998631 12378999999998554321110 011123444555556778899
Q ss_pred eecccccccccceeeeecCCCCccCCccceeeccccccccccccccccccccCccCchhHHHHHHHHHHHHHhccCCCCC
Q 039491 1028 YCGSVSHRKGSGVINIKLPYHGAAAGVSYEVRGIDKKELLCICNCKIKIDQVGLLEDVSSAAFSKTVQQLLVLKSDEKKY 1107 (1379)
Q Consensus 1028 ~~~~~~~i~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1107 (1379)
+||++++|..||.+++++| . +++....++++.++++++.+.++++
T Consensus 155 v~v~l~~I~~ISs~rl~lp-------------------------------~-dl~~~~~r~~~~~~l~el~~r~~~g--- 199 (268)
T PF13234_consen 155 VPVPLSCISSISSVRLKLP-------------------------------K-DLRPQEARKQVLKSLQELLKRFPDG--- 199 (268)
T ss_dssp EEEECCGEEEEEEEE-----------------------------------T-TTTSCCCHHHHHHHHHHHHHHSSS----
T ss_pred EEeeHHHHHHhhceeeeCc-------------------------------c-cccchHHHHHHHHHHHHHHHhCCCC---
Confidence 9999999999999988888 2 4555567889999999999998777
Q ss_pred CCCCChhhhcccCchhHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcH
Q 039491 1108 PQALDPVKDLKLKDMNLVEAYYKWAGLLRKMAANKCHGCIKLEEHMKLTKENKRHKDEVNTLKFQMSD 1175 (1379)
Q Consensus 1108 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~c~~~~~h~~~~~~~~~l~~~i~~l~~~ls~ 1175 (1379)
+|.+||++||++++.+|.+.+.+++.|+++|.+|||+.||+|.+||+.++++..|+++++.|+++|++
T Consensus 200 iP~LDPi~DmkI~d~~~~e~~~k~~~Le~rl~~~~~~~~~~~~~~~~~~~~k~~l~~~i~~Lk~~l~~ 267 (268)
T PF13234_consen 200 IPLLDPIKDMKIKDPEFVELVKKIEALEKRLSSHPLHKCPDFEEHYALYHEKAELQEEIKALKRQLSD 267 (268)
T ss_dssp -TCHHCHHHH----HHHHHHHHHHHHHHHHHHHSCHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccChHHhCCCCcHHHHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999999999999999999999985
No 69
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.97 E-value=2.6e-29 Score=314.56 Aligned_cols=311 Identities=17% Similarity=0.123 Sum_probs=210.0
Q ss_pred HHHHHHHHHHHCCCcEEEEcCCCccHHHH---------HHHHHHHHH---h---cCCcEEEecchHHHHHHHHHHHhccc
Q 039491 403 NFQKEAIYYLENGDSVFVAAHTSAGKTVV---------AEYAFALAT---K---HCTRAVYTAPIKTISNQKYRDFSGKF 467 (1379)
Q Consensus 403 ~~Q~eAI~~L~~g~sVlV~ApTGSGKTlv---------ae~aI~~~l---~---~~~raIylsPtkaLsnQk~~~~~~~f 467 (1379)
.+|+++++.+.+|+++++.|+||||||.+ |.++....+ . ...++++++|+++|+.|....+.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999986 223333322 2 34689999999999999999887532
Q ss_pred --------cEEEEecCcccC------CCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc
Q 039491 468 --------DVGLLTGDVSLR------PEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML 533 (1379)
Q Consensus 468 --------~VglltGdv~in------~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L 533 (1379)
.+.+..|+..-. ...+++|+|+... ...+.++++|||||||.+... +.....++..+
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~--~DllL~llk~~ 317 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQI--GDIIIAVARKH 317 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccc--hhHHHHHHHHh
Confidence 467788877521 1357999986531 124788999999999998765 44444444444
Q ss_pred -CccceEEEecccCCC-hHHHHHHHhhhcCCcEEEEccCCC-CcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhh
Q 039491 534 -PRHINIVLLSATVPN-TVEFADWIGRTKQKKIRVTGTTKR-PVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRK 610 (1379)
Q Consensus 534 -p~~vqiIlLSATvpN-~~efa~wl~~~~~~~i~vi~t~~R-pvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~ 610 (1379)
+...|+++||||++. ...|.++++ ++..+.. +.+ ..|+++++..... . . .....+.
T Consensus 318 ~~~~rq~ILmSATl~~dv~~l~~~~~----~p~~I~I-~grt~~pV~~~yi~~~~-----~-~-~~~~~y~--------- 376 (675)
T PHA02653 318 IDKIRSLFLMTATLEDDRDRIKEFFP----NPAFVHI-PGGTLFPISEVYVKNKY-----N-P-KNKRAYI--------- 376 (675)
T ss_pred hhhcCEEEEEccCCcHhHHHHHHHhc----CCcEEEe-CCCcCCCeEEEEeecCc-----c-c-ccchhhh---------
Confidence 334599999999984 456666664 2333322 333 3567665532210 0 0 0000000
Q ss_pred ccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEE
Q 039491 611 NLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVI 690 (1379)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIV 690 (1379)
..........+..+.....+.+||
T Consensus 377 --------------------------------------------------------~~~k~~~l~~L~~~~~~~~g~iLV 400 (675)
T PHA02653 377 --------------------------------------------------------EEEKKNIVTALKKYTPPKGSSGIV 400 (675)
T ss_pred --------------------------------------------------------HHHHHHHHHHHHHhhcccCCcEEE
Confidence 001111222222222223468999
Q ss_pred EeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHh
Q 039491 691 FCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLF 770 (1379)
Q Consensus 691 Fv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF 770 (1379)
|++++.+|+.+++.|.+... ...+..+||+|++. +.++..|
T Consensus 401 Flpg~~ei~~l~~~L~~~~~-------------------------------------~~~v~~LHG~Lsq~--eq~l~~f 441 (675)
T PHA02653 401 FVASVSQCEEYKKYLEKRLP-------------------------------------IYDFYIIHGKVPNI--DEILEKV 441 (675)
T ss_pred EECcHHHHHHHHHHHHhhcC-------------------------------------CceEEeccCCcCHH--HHHHHHH
Confidence 99999999999999875310 01256799999985 4555566
Q ss_pred -cCCCeeEEEecccccccCCCCCceEEEccccccCC----cccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCC
Q 039491 771 -CRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDG----REFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 771 -~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg----~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~ 841 (1379)
++|..+|||||+++++|||+|++++||+....+.. ....+.|..+|+||+|||||.+ .|.||.+++.+
T Consensus 442 f~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~---~G~c~rLyt~~ 514 (675)
T PHA02653 442 YSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRVS---PGTYVYFYDLD 514 (675)
T ss_pred hccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCCC---CCeEEEEECHH
Confidence 78999999999999999999999999994311111 0123569999999999999994 39999999764
No 70
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=4.2e-29 Score=295.94 Aligned_cols=284 Identities=18% Similarity=0.158 Sum_probs=190.2
Q ss_pred HHHHHHHHHHCCCc--EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc---------cEEEE
Q 039491 404 FQKEAIYYLENGDS--VFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF---------DVGLL 472 (1379)
Q Consensus 404 ~Q~eAI~~L~~g~s--VlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f---------~Vgll 472 (1379)
+|.+++..+.++++ ++++||||||||.+|+++++. .+.+++|++|+++|++|+++++++.+ .+..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~---~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~ 77 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH---GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHV 77 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH---cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEe
Confidence 59999999988764 889999999999999888774 45689999999999999999988875 25566
Q ss_pred ecCccc---------------------------CCCCceeeecHHHHHHHHhcC-----c---ccCCCccEEEEeccCCC
Q 039491 473 TGDVSL---------------------------RPEASCLIMTTEILRSMLYRG-----A---DIIRDIEWVIFDEVHYV 517 (1379)
Q Consensus 473 tGdv~i---------------------------n~~a~IlV~TpEiL~smL~~~-----~---~~l~~v~lVI~DEaH~l 517 (1379)
+|+..- .....|+++||++|..++++. . ..+.++++|||||+|.+
T Consensus 78 ~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~ 157 (357)
T TIGR03158 78 SKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLY 157 (357)
T ss_pred cCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEeccccc
Confidence 776211 013567888899997766531 1 13578999999999998
Q ss_pred CCccchhHH-----HHHHHHcCccceEEEecccCCChHHHHHHHhhh--cCCcEEEEccC------------------CC
Q 039491 518 NDIERGVVW-----EEVIIMLPRHINIVLLSATVPNTVEFADWIGRT--KQKKIRVTGTT------------------KR 572 (1379)
Q Consensus 518 ~d~~rG~v~-----eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~--~~~~i~vi~t~------------------~R 572 (1379)
..+.....+ ..++.......++++||||++. .+.+.+... .+.++.++... .|
T Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~--~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~ 235 (357)
T TIGR03158 158 DAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDP--ALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFR 235 (357)
T ss_pred CcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCH--HHHHHHHhccccCceeeeecCcccccCCChhhhccccccccc
Confidence 754332222 2223333445799999999875 334444432 22233222221 01
Q ss_pred Cc--CceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccc
Q 039491 573 PV--PLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSV 650 (1379)
Q Consensus 573 pv--pLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~ 650 (1379)
|+ ++++.+.... .+
T Consensus 236 ~~~~~i~~~~~~~~---------~~------------------------------------------------------- 251 (357)
T TIGR03158 236 PVLPPVELELIPAP---------DF------------------------------------------------------- 251 (357)
T ss_pred eeccceEEEEEeCC---------ch-------------------------------------------------------
Confidence 00 1111110000 00
Q ss_pred cccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhc
Q 039491 651 VGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRL 730 (1379)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L 730 (1379)
. ..........+.+.+......++||||+|++.|+.++..|.+.+...
T Consensus 252 -------------~-~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~------------------ 299 (357)
T TIGR03158 252 -------------K-EEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGD------------------ 299 (357)
T ss_pred -------------h-HHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCc------------------
Confidence 0 00001111223333334456799999999999999999997643211
Q ss_pred cCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCccccc
Q 039491 731 KGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQ 810 (1379)
Q Consensus 731 ~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rp 810 (1379)
.+..+||.+.+..|+.+ +..+|||||+++++|||+|...||++ |
T Consensus 300 -------------------~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~~vi~~-----------p 343 (357)
T TIGR03158 300 -------------------DIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRDWLIFS-----------A 343 (357)
T ss_pred -------------------eEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCceEEEC-----------C
Confidence 25569999999998754 47899999999999999999866653 5
Q ss_pred CCHHHHHHHhcccC
Q 039491 811 LLPGEYTQMAGRAG 824 (1379)
Q Consensus 811 ls~~eyiQmaGRAG 824 (1379)
.+...|+||+||+|
T Consensus 344 ~~~~~yiqR~GR~g 357 (357)
T TIGR03158 344 RDAAAFWQRLGRLG 357 (357)
T ss_pred CCHHHHhhhcccCC
Confidence 67889999999997
No 71
>PRK13766 Hef nuclease; Provisional
Probab=99.97 E-value=2.4e-28 Score=317.40 Aligned_cols=397 Identities=17% Similarity=0.165 Sum_probs=239.8
Q ss_pred CCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh-cCCcEEEecchHHHHHHHHHHHhccc-----cEE
Q 039491 397 FPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK-HCTRAVYTAPIKTISNQKYRDFSGKF-----DVG 470 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~-~~~raIylsPtkaLsnQk~~~~~~~f-----~Vg 470 (1379)
..+++++||++++..+..+ +++|++|||+|||++|.++++..+. .+.++||++|+++|++|+++.+++.+ ++.
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~ 90 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIV 90 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEE
Confidence 3567999999999988777 8999999999999999888877663 46899999999999999999998876 678
Q ss_pred EEecCccc------CCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecc
Q 039491 471 LLTGDVSL------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSA 544 (1379)
Q Consensus 471 lltGdv~i------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSA 544 (1379)
.++|+.+. ..+++|+|+||+++.+.+..+...+.++++|||||||++........+........+..++++|||
T Consensus 91 ~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTa 170 (773)
T PRK13766 91 VFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTA 170 (773)
T ss_pred EEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEEc
Confidence 89998763 235789999999999888777777889999999999998754322222222333344567999999
Q ss_pred cCCCh-HHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHh----hcc--ccccC
Q 039491 545 TVPNT-VEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKR----KNL--SAASG 617 (1379)
Q Consensus 545 TvpN~-~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~----~~~--~~~~~ 617 (1379)
|+... ..+...+.......+.+ .+...+ .+..++....-.+..+. ...........+.. ... .....
T Consensus 171 TP~~~~~~i~~~~~~L~i~~v~~-~~~~~~-~v~~~~~~~~v~~~~v~----l~~~~~~i~~~l~~~~~~~l~~l~~~~~ 244 (773)
T PRK13766 171 SPGSDEEKIKEVCENLGIEHVEV-RTEDDP-DVKPYVHKVKIEWVRVE----LPEELKEIRDLLNEALKDRLKKLKELGV 244 (773)
T ss_pred CCCCCHHHHHHHHHhCCceEEEE-cCCCCh-hHHhhhccceeEEEEeC----CcHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 96533 34444444332223332 222222 12222211110000011 01111111111100 000 00000
Q ss_pred CCCCCC-CCC-CC---ccccccc---ccCCC---------------------CCCCCC--Cc----cccccccCCCCCCC
Q 039491 618 ATGSYA-GAS-SP---RDGARAQ---KREHP---------------------NRGKQN--KH----SVVGIKNSGGSQNN 662 (1379)
Q Consensus 618 ~~~~~~-~~~-~~---~~~~~~~---~~~~~---------------------~~gr~~--~~----~~~~~~~~~~~~~~ 662 (1379)
...... ... .. ....... .+... ..+... .. .......++.....
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~ 324 (773)
T PRK13766 245 IVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASK 324 (773)
T ss_pred cccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHH
Confidence 000000 000 00 0000000 00000 000000 00 00000000000000
Q ss_pred c--------------ccccchhHHHHHHHHHHHh----CCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHH
Q 039491 663 W--------------GLRRSEVSIWLTLINKLSK----KSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCD 724 (1379)
Q Consensus 663 ~--------------~~~~~~~~~~~~Li~~L~~----~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~ 724 (1379)
. ........+|..|.+.+.. .+..++||||.+++.|+.++..|...++....
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~---------- 394 (773)
T PRK13766 325 RLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVR---------- 394 (773)
T ss_pred HHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEE----------
Confidence 0 0000112345555555533 56789999999999999999999766554321
Q ss_pred HHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccC
Q 039491 725 KAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFD 804 (1379)
Q Consensus 725 ~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfD 804 (1379)
+.+.. -..-|+||++.+|..++..|++|.++|||||+++++|+|+|.+++||+ ||
T Consensus 395 -----~~g~~----------------~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~----yd 449 (773)
T PRK13766 395 -----FVGQA----------------SKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIF----YE 449 (773)
T ss_pred -----EEccc----------------cccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE----eC
Confidence 10000 000256799999999999999999999999999999999999999999 99
Q ss_pred CcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCC
Q 039491 805 GREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEI 842 (1379)
Q Consensus 805 g~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~ 842 (1379)
. +.++..|+||+||+||.|. |.+++++..+.
T Consensus 450 ~----~~s~~r~iQR~GR~gR~~~---~~v~~l~~~~t 480 (773)
T PRK13766 450 P----VPSEIRSIQRKGRTGRQEE---GRVVVLIAKGT 480 (773)
T ss_pred C----CCCHHHHHHHhcccCcCCC---CEEEEEEeCCC
Confidence 8 8999999999999999874 78888887654
No 72
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.97 E-value=6.3e-29 Score=318.71 Aligned_cols=325 Identities=22% Similarity=0.280 Sum_probs=242.1
Q ss_pred CCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcC--CcEEEecchHHHHHHHHHHHhccc-------c
Q 039491 398 PFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHC--TRAVYTAPIKTISNQKYRDFSGKF-------D 468 (1379)
Q Consensus 398 pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~--~raIylsPtkaLsnQk~~~~~~~f-------~ 468 (1379)
++.|+.+|.+|+..+.+|+||+|+.+||||||.+|.+||+..+.+. .++||+.|||||+|.+.++|++.. .
T Consensus 68 ~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~ 147 (851)
T COG1205 68 IERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVT 147 (851)
T ss_pred cccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcce
Confidence 3348999999999999999999999999999999999999988544 467999999999999999998764 5
Q ss_pred EEEEecCccc-------CCCCceeeecHHHHHHHHhcCc----ccCCCccEEEEeccCCCCCccchhHHHHHHHHc----
Q 039491 469 VGLLTGDVSL-------RPEASCLIMTTEILRSMLYRGA----DIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML---- 533 (1379)
Q Consensus 469 VglltGdv~i-------n~~a~IlV~TpEiL~smL~~~~----~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---- 533 (1379)
++.+|||..- ...++||+++|.+|..++.+.. ..++++++||+||+|.... -+|..+-.++..|
T Consensus 148 ~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG-v~GS~vA~llRRL~~~~ 226 (851)
T COG1205 148 FGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG-VQGSEVALLLRRLLRRL 226 (851)
T ss_pred eeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc-cchhHHHHHHHHHHHHH
Confidence 7789999873 3458999999999988776643 3567899999999998754 2355444444332
Q ss_pred ---CccceEEEecccCCChHHHHHHHhhhcCCcEEE-EccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHh
Q 039491 534 ---PRHINIVLLSATVPNTVEFADWIGRTKQKKIRV-TGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKR 609 (1379)
Q Consensus 534 ---p~~vqiIlLSATvpN~~efa~wl~~~~~~~i~v-i~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~ 609 (1379)
+.+.|+|+.|||+.|+.+|+.-+... ...+ +..+..|-...+++.....++....
T Consensus 227 ~~~~~~~q~i~~SAT~~np~e~~~~l~~~---~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~------------------ 285 (851)
T COG1205 227 RRYGSPLQIICTSATLANPGEFAEELFGR---DFEVPVDEDGSPRGLRYFVRREPPIRELAE------------------ 285 (851)
T ss_pred hccCCCceEEEEeccccChHHHHHHhcCC---cceeeccCCCCCCCceEEEEeCCcchhhhh------------------
Confidence 45789999999999999988766533 3333 5555555555554432221100000
Q ss_pred hccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEE
Q 039491 610 KNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVV 689 (1379)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvI 689 (1379)
..+++....+..++..+..+ +.++|
T Consensus 286 ------------------------------------------------------~~r~s~~~~~~~~~~~~~~~-~~~tL 310 (851)
T COG1205 286 ------------------------------------------------------SIRRSALAELATLAALLVRN-GIQTL 310 (851)
T ss_pred ------------------------------------------------------hcccchHHHHHHHHHHHHHc-CceEE
Confidence 00011233444555555544 58999
Q ss_pred EEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHH
Q 039491 690 IFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEML 769 (1379)
Q Consensus 690 VFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~l 769 (1379)
+|+.|++.++.++......-.. ....+..-|..|||||.+.+|..++..
T Consensus 311 ~F~~sr~~~e~~~~~~~~~~~~-------------------------------~~~~l~~~v~~~~~~~~~~er~~ie~~ 359 (851)
T COG1205 311 VFFRSRKQVELLYLSPRRRLVR-------------------------------EGGKLLDAVSTYRAGLHREERRRIEAE 359 (851)
T ss_pred EEEehhhhhhhhhhchhHHHhh-------------------------------cchhhhhheeeccccCCHHHHHHHHHH
Confidence 9999999999987554331000 001123347889999999999999999
Q ss_pred hcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccC-CHHHHHHHhcccCCCCCCCcEEEEEEecC
Q 039491 770 FCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQL-LPGEYTQMAGRAGRRGLDKIGTVVVLCRD 840 (1379)
Q Consensus 770 F~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpl-s~~eyiQmaGRAGRrG~d~~G~vIil~~~ 840 (1379)
|++|.++++++|.++..|||+-++..||. +.- |- +..++.||+|||||+++. +.++++...
T Consensus 360 ~~~g~~~~~~st~AlelgidiG~ldavi~----~g~----P~~s~~~~~Q~~GRaGR~~~~--~l~~~v~~~ 421 (851)
T COG1205 360 FKEGELLGVIATNALELGIDIGSLDAVIA----YGY----PGVSVLSFRQRAGRAGRRGQE--SLVLVVLRS 421 (851)
T ss_pred HhcCCccEEecchhhhhceeehhhhhHhh----cCC----CCchHHHHHHhhhhccCCCCC--ceEEEEeCC
Confidence 99999999999999999999999999998 444 66 889999999999999954 666666553
No 73
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.96 E-value=2.6e-28 Score=316.82 Aligned_cols=341 Identities=18% Similarity=0.248 Sum_probs=230.1
Q ss_pred CHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHH-HHHHHhcC--CcEEEecch----HHHHHHHHHHHhccc--cEEEE
Q 039491 402 DNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYA-FALATKHC--TRAVYTAPI----KTISNQKYRDFSGKF--DVGLL 472 (1379)
Q Consensus 402 ~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~a-I~~~l~~~--~raIylsPt----kaLsnQk~~~~~~~f--~Vgll 472 (1379)
..+-.+.+.++..++.++|+|+||||||+. +| +......+ .+++++.|. ++||.|+..++...+ .||.-
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~ 153 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYK 153 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceecee
Confidence 566667788888888999999999999994 45 33333333 467788885 577778877777644 55553
Q ss_pred ec-CcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccC-CCCCccchhHHHHHHHHcC--ccceEEEecccCCC
Q 039491 473 TG-DVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVH-YVNDIERGVVWEEVIIMLP--RHINIVLLSATVPN 548 (1379)
Q Consensus 473 tG-dv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH-~l~d~~rG~v~eeii~~Lp--~~vqiIlLSATvpN 548 (1379)
+. +.+......|+||||++|...+... ..++++++||+|||| ++.+.++-. ..+...++ ++.|+|+||||++
T Consensus 154 vrf~~~~s~~t~I~v~TpG~LL~~l~~d-~~Ls~~~~IIIDEAHERsLn~DfLL--g~Lk~lL~~rpdlKvILmSATid- 229 (1294)
T PRK11131 154 VRFNDQVSDNTMVKLMTDGILLAEIQQD-RLLMQYDTIIIDEAHERSLNIDFIL--GYLKELLPRRPDLKVIITSATID- 229 (1294)
T ss_pred ecCccccCCCCCEEEEChHHHHHHHhcC-CccccCcEEEecCccccccccchHH--HHHHHhhhcCCCceEEEeeCCCC-
Confidence 32 3345567899999999999988765 458999999999999 566654332 22223333 4689999999995
Q ss_pred hHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCC
Q 039491 549 TVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSP 628 (1379)
Q Consensus 549 ~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 628 (1379)
...|+++++. .++. .-+.+..|+++++.+.. .... ..
T Consensus 230 ~e~fs~~F~~---apvI--~V~Gr~~pVei~y~p~~------~~~~----~~---------------------------- 266 (1294)
T PRK11131 230 PERFSRHFNN---APII--EVSGRTYPVEVRYRPIV------EEAD----DT---------------------------- 266 (1294)
T ss_pred HHHHHHHcCC---CCEE--EEcCccccceEEEeecc------cccc----hh----------------------------
Confidence 5678777652 3332 22344445554432211 0000 00
Q ss_pred cccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcC
Q 039491 629 RDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGI 708 (1379)
Q Consensus 629 ~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~ 708 (1379)
.......+...+..+.....+.+|||++++.+++.+++.|...
T Consensus 267 -------------------------------------~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~ 309 (1294)
T PRK11131 267 -------------------------------------ERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKL 309 (1294)
T ss_pred -------------------------------------hHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhc
Confidence 0000111222233343445678999999999999999999775
Q ss_pred CCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccC
Q 039491 709 DLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGV 788 (1379)
Q Consensus 709 ~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GI 788 (1379)
++... .|..+||+|++.+|..++.. .|..+|||||+++++||
T Consensus 310 ~~~~~------------------------------------~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSI 351 (1294)
T PRK11131 310 NLRHT------------------------------------EILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSL 351 (1294)
T ss_pred CCCcc------------------------------------eEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhcc
Confidence 44321 25679999999999999875 57899999999999999
Q ss_pred CCCCceEEEcc----ccccCCcc------cccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHH-hcCCC
Q 039491 789 NAPARTVVFDN----LRKFDGRE------FRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHII-VGSAT 857 (1379)
Q Consensus 789 NiPa~tvVI~~----~~kfDg~~------~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li-~g~~~ 857 (1379)
|+|++++||+. ...||... ..+.|..+|.||+|||||.+ .|.||.+++++ .+..+- ...|+
T Consensus 352 TIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte~-----d~~~~~~~~~PE 423 (1294)
T PRK11131 352 TVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSED-----DFLSRPEFTDPE 423 (1294)
T ss_pred ccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCHH-----HHHhhhcccCCc
Confidence 99999999984 23354431 22467789999999999995 39999998643 233332 23455
Q ss_pred cccccccccHHHHHHHHhhc
Q 039491 858 RLESQFRLTYIMILHLLRVE 877 (1379)
Q Consensus 858 ~L~S~f~lty~miLnLlr~e 877 (1379)
.+.+.+. ++||.+..++
T Consensus 424 IlR~~L~---~viL~lk~lg 440 (1294)
T PRK11131 424 ILRTNLA---SVILQMTALG 440 (1294)
T ss_pred cccCCHH---HHHHHHHHcC
Confidence 5555544 6777776543
No 74
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=9.6e-28 Score=299.22 Aligned_cols=327 Identities=15% Similarity=0.112 Sum_probs=215.1
Q ss_pred CCCCCCHHHHHHHHHHH-CC--CcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-----c
Q 039491 397 FPFELDNFQKEAIYYLE-NG--DSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-----D 468 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~L~-~g--~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-----~ 468 (1379)
..++|+|||++|+..+. +| ++.++++|||+|||+++..++... +.++||+||+..|+.||.++|.+.+ .
T Consensus 252 ~~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l---~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~ 328 (732)
T TIGR00603 252 PTTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV---KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQ 328 (732)
T ss_pred cCCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh---CCCEEEEeCcHHHHHHHHHHHHHhcCCCCce
Confidence 35779999999999976 34 478999999999999987666543 5789999999999999999999875 6
Q ss_pred EEEEecCcccC--CCCceeeecHHHHHHHHhcCc------ccC--CCccEEEEeccCCCCCccchhHHHHHHHHcCccce
Q 039491 469 VGLLTGDVSLR--PEASCLIMTTEILRSMLYRGA------DII--RDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHIN 538 (1379)
Q Consensus 469 VglltGdv~in--~~a~IlV~TpEiL~smL~~~~------~~l--~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vq 538 (1379)
++.++|+.... ....|+|+|+.++.+...+.. ..+ +.+++||+||||++. ...+..++..+..+ .
T Consensus 329 I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp----A~~fr~il~~l~a~-~ 403 (732)
T TIGR00603 329 ICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP----AAMFRRVLTIVQAH-C 403 (732)
T ss_pred EEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc----HHHHHHHHHhcCcC-c
Confidence 78888875432 247899999998865432211 122 468899999999995 45677777777543 5
Q ss_pred EEEecccCCChHHHHHHHhhhcCCcEEEEcc-----CCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccc
Q 039491 539 IVLLSATVPNTVEFADWIGRTKQKKIRVTGT-----TKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLS 613 (1379)
Q Consensus 539 iIlLSATvpN~~efa~wl~~~~~~~i~vi~t-----~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~ 613 (1379)
.++||||+....+....+....+..++.... ...-.|.+.+ .+.- .+....+... +.....
T Consensus 404 RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~--------ev~v--~~t~~~~~~y---l~~~~~- 469 (732)
T TIGR00603 404 KLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCA--------EVWC--PMTPEFYREY---LRENSR- 469 (732)
T ss_pred EEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEE--------EEEe--cCCHHHHHHH---HHhcch-
Confidence 6999999764322111122111222221110 0111111111 1100 0111111111 100000
Q ss_pred cccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeC
Q 039491 614 AASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCF 693 (1379)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~ 693 (1379)
. +...+ .........+..+++... ..+.++||||.
T Consensus 470 ~------------------k~~l~--------------------------~~np~K~~~~~~Li~~he-~~g~kiLVF~~ 504 (732)
T TIGR00603 470 K------------------RMLLY--------------------------VMNPNKFRACQFLIRFHE-QRGDKIIVFSD 504 (732)
T ss_pred h------------------hhHHh--------------------------hhChHHHHHHHHHHHHHh-hcCCeEEEEeC
Confidence 0 00000 000001122333444332 35689999999
Q ss_pred ChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCC
Q 039491 694 SKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRG 773 (1379)
Q Consensus 694 Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G 773 (1379)
+...++.++..|. +.+.||++++.+|+.++..|+.|
T Consensus 505 ~~~~l~~~a~~L~--------------------------------------------~~~I~G~ts~~ER~~il~~Fr~~ 540 (732)
T TIGR00603 505 NVFALKEYAIKLG--------------------------------------------KPFIYGPTSQQERMQILQNFQHN 540 (732)
T ss_pred CHHHHHHHHHHcC--------------------------------------------CceEECCCCHHHHHHHHHHHHhC
Confidence 9998888887662 23589999999999999999875
Q ss_pred -CeeEEEecccccccCCCCCceEEEccccccCCccccc-CCHHHHHHHhcccCCCCCCCc-----EEEEEEecCCC
Q 039491 774 -VVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQ-LLPGEYTQMAGRAGRRGLDKI-----GTVVVLCRDEI 842 (1379)
Q Consensus 774 -~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rp-ls~~eyiQmaGRAGRrG~d~~-----G~vIil~~~~~ 842 (1379)
.+++||+|.++++|||+|.+++||. +++ + -+..+|+||+||++|.+.+.. ...|.+++.+.
T Consensus 541 ~~i~vLv~SkVgdeGIDlP~a~vvI~----~s~----~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 541 PKVNTIFLSKVGDTSIDLPEANVLIQ----ISS----HYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred CCccEEEEecccccccCCCCCCEEEE----eCC----CCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 8899999999999999999999999 776 4 489999999999999986533 34477777765
No 75
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.96 E-value=6.4e-28 Score=295.04 Aligned_cols=396 Identities=19% Similarity=0.231 Sum_probs=232.8
Q ss_pred CCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh--cCCcEEEecchHHHHHHHHHHHhccc---cEEEE
Q 039491 398 PFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK--HCTRAVYTAPIKTISNQKYRDFSGKF---DVGLL 472 (1379)
Q Consensus 398 pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~--~~~raIylsPtkaLsnQk~~~~~~~f---~Vgll 472 (1379)
.+.|++||.+.+...+ |+|++|++|||+|||++|.+.+...++ ...|+|+++|++-|.+|+...|...+ .+-..
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T~~ 138 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSVTGQ 138 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCcccceee
Confidence 4679999999999988 999999999999999999999999884 46899999999999999998888877 44444
Q ss_pred ecC-cccC------CCCceeeecHHHHHHHHhcCcc-cCCCccEEEEeccCCCCCcc-chhHHHHHHHHcCccceEEEec
Q 039491 473 TGD-VSLR------PEASCLIMTTEILRSMLYRGAD-IIRDIEWVIFDEVHYVNDIE-RGVVWEEVIIMLPRHINIVLLS 543 (1379)
Q Consensus 473 tGd-v~in------~~a~IlV~TpEiL~smL~~~~~-~l~~v~lVI~DEaH~l~d~~-rG~v~eeii~~Lp~~vqiIlLS 543 (1379)
.|| +... ...+++|+||.+|.+.|..+.. .+.++.++||||||+-.... +-.++.+.+..-....|||+||
T Consensus 139 l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLT 218 (746)
T KOG0354|consen 139 LGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQILGLT 218 (746)
T ss_pred ccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccEEEEe
Confidence 455 3322 2368999999999999988643 36899999999999976433 3333334433323334999999
Q ss_pred ccCCChH-HHHHHHhhhcCC-cEEEEccCCCCcC-c-eEEEeecCceeeecc---CcccchhhHHHHHHHHHhhcccccc
Q 039491 544 ATVPNTV-EFADWIGRTKQK-KIRVTGTTKRPVP-L-EHCLYYSGEFYKVCE---NEAFIPQGWKAAKDAYKRKNLSAAS 616 (1379)
Q Consensus 544 ATvpN~~-efa~wl~~~~~~-~i~vi~t~~Rpvp-L-e~~l~~~~~l~~i~d---~~~f~~~~~~~~~~~l~~~~~~~~~ 616 (1379)
||+.+.. +..+.+....-. ++...++-..+.. + +|...+.+ +.++. .+.|. .-+...+..+....-....
T Consensus 219 ASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~--~~~~~~~~~~~f~-~~i~p~l~~l~~~~l~~~~ 295 (746)
T KOG0354|consen 219 ASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVD--LSLCERDIEDPFG-MIIEPLLQQLQEEGLIEIS 295 (746)
T ss_pred cCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCc--HHHhhhhhhhhHH-HHHHHHHHHHHhcCccccc
Confidence 9998653 555555543221 1111111111110 1 11111111 11111 11110 0111111111111000000
Q ss_pred C---CCCCCCCC---CCCcccccccccC-------------CCCCC-C------------CCCccc---------ccccc
Q 039491 617 G---ATGSYAGA---SSPRDGARAQKRE-------------HPNRG-K------------QNKHSV---------VGIKN 655 (1379)
Q Consensus 617 ~---~~~~~~~~---~~~~~~~~~~~~~-------------~~~~g-r------------~~~~~~---------~~~~~ 655 (1379)
. ........ ...........+. ....| | .....+ .....
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~ 375 (746)
T KOG0354|consen 296 DKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRN 375 (746)
T ss_pred cccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHH
Confidence 0 00000000 0000000000000 00000 0 000000 00000
Q ss_pred ----CCCCCCCcccccchhHHHHHHHHHH----HhCCCCCEEEEeCChhHHHHHHHHhhcC---CCCCchhhhHHHHHHH
Q 039491 656 ----SGGSQNNWGLRRSEVSIWLTLINKL----SKKSLLPVVIFCFSKNHCDKLADGMSGI---DLTSSSEKSEIRVFCD 724 (1379)
Q Consensus 656 ----~~~~~~~~~~~~~~~~~~~~Li~~L----~~~~~~pvIVFv~Srk~ce~lA~~L~~~---~l~~~~ek~~i~~~~~ 724 (1379)
-...+...........++..+.+.+ ......++||||.+|..|+.+...|.+. ++...
T Consensus 376 ~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~----------- 444 (746)
T KOG0354|consen 376 FTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAE----------- 444 (746)
T ss_pred HHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccc-----------
Confidence 0000000000001223344444433 3345678999999999999999998741 11111
Q ss_pred HHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccC
Q 039491 725 KAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFD 804 (1379)
Q Consensus 725 ~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfD 804 (1379)
-+.+.|-+.--.||++.++..++..|++|.++|||||+++++|+|+|.+++||. ||
T Consensus 445 --------------------~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIc----Yd 500 (746)
T KOG0354|consen 445 --------------------IFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVIC----YD 500 (746)
T ss_pred --------------------eeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEE----ec
Confidence 112222233347999999999999999999999999999999999999999999 99
Q ss_pred CcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecC
Q 039491 805 GREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRD 840 (1379)
Q Consensus 805 g~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~ 840 (1379)
. ..++...+||.|| ||+-. |.++++.+.
T Consensus 501 ~----~snpIrmIQrrGR-gRa~n---s~~vll~t~ 528 (746)
T KOG0354|consen 501 Y----SSNPIRMVQRRGR-GRARN---SKCVLLTTG 528 (746)
T ss_pred C----CccHHHHHHHhcc-ccccC---CeEEEEEcc
Confidence 8 7789999999999 99753 888888873
No 76
>PRK09401 reverse gyrase; Reviewed
Probab=99.96 E-value=5.9e-28 Score=318.18 Aligned_cols=312 Identities=15% Similarity=0.090 Sum_probs=213.0
Q ss_pred ccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec
Q 039491 371 EAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA 450 (1379)
Q Consensus 371 ~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls 450 (1379)
..|..+.......+.|.++ +...++|+|+++|+++++.+..|+|++++||||+|||..+..++.....++.+++|++
T Consensus 54 ~~~~~~~~~~~~~~~~~~~---f~~~~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~ 130 (1176)
T PRK09401 54 KEYEELYNLEEEYKEFEKF---FKKKTGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIF 130 (1176)
T ss_pred hHHHHHHHHHHHHHHHHHH---HHHhcCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3454444444444444443 3445799999999999999999999999999999999754443333335688999999
Q ss_pred chHHHHHHHHHHHhccc-----cEEEEecCccc-------------CCCCceeeecHHHHHHHHhcCcccCCCccEEEEe
Q 039491 451 PIKTISNQKYRDFSGKF-----DVGLLTGDVSL-------------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFD 512 (1379)
Q Consensus 451 PtkaLsnQk~~~~~~~f-----~VglltGdv~i-------------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~D 512 (1379)
||++|++|+++.+++.+ .+.+++|+..+ +.+.+|+|+||+.|.+++. .....++++||+|
T Consensus 131 PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvD 208 (1176)
T PRK09401 131 PTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVD 208 (1176)
T ss_pred ccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEE
Confidence 99999999999999876 45566665432 2357999999999988775 2334569999999
Q ss_pred ccCCCCCccch------------hHHHHHHHHcCc------------------------cceEEEecccCCCh-HHHHHH
Q 039491 513 EVHYVNDIERG------------VVWEEVIIMLPR------------------------HINIVLLSATVPNT-VEFADW 555 (1379)
Q Consensus 513 EaH~l~d~~rG------------~v~eeii~~Lp~------------------------~vqiIlLSATvpN~-~efa~w 555 (1379)
|||++.++.+. ..++.++..+|. ..|++++|||.+.. ... ..
T Consensus 209 EaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~-~l 287 (1176)
T PRK09401 209 DVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV-KL 287 (1176)
T ss_pred ChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH-HH
Confidence 99999874432 245555555543 68999999998642 221 11
Q ss_pred HhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCccccccc
Q 039491 556 IGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQ 635 (1379)
Q Consensus 556 l~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1379)
+.... .+.+-......-.+.+.++...
T Consensus 288 ~~~ll--~~~v~~~~~~~rnI~~~yi~~~--------------------------------------------------- 314 (1176)
T PRK09401 288 FRELL--GFEVGSPVFYLRNIVDSYIVDE--------------------------------------------------- 314 (1176)
T ss_pred hhccc--eEEecCcccccCCceEEEEEcc---------------------------------------------------
Confidence 11100 0111100000001222111000
Q ss_pred ccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhH---HHHHHHHhhcCCCCC
Q 039491 636 KREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNH---CDKLADGMSGIDLTS 712 (1379)
Q Consensus 636 ~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~---ce~lA~~L~~~~l~~ 712 (1379)
.....+...+... +.++||||++++. |+.+++.|...|+.
T Consensus 315 -----------------------------------~k~~~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~- 357 (1176)
T PRK09401 315 -----------------------------------DSVEKLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDLGIN- 357 (1176)
T ss_pred -----------------------------------cHHHHHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHCCCc-
Confidence 1112233333333 3589999999888 99999999887765
Q ss_pred chhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEe----cccccccC
Q 039491 713 SSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFS----TETFAMGV 788 (1379)
Q Consensus 713 ~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVA----Tetla~GI 788 (1379)
++.+||+| ++ .++.|++|.++|||| |++++|||
T Consensus 358 --------------------------------------v~~~hg~l----~~-~l~~F~~G~~~VLVatas~tdv~aRGI 394 (1176)
T PRK09401 358 --------------------------------------AELAISGF----ER-KFEKFEEGEVDVLVGVASYYGVLVRGI 394 (1176)
T ss_pred --------------------------------------EEEEeCcH----HH-HHHHHHCCCCCEEEEecCCCCceeecC
Confidence 45699999 23 349999999999999 68999999
Q ss_pred CCCC-ceEEEccccccCCccccc--CCHHHHHHHhcccCC
Q 039491 789 NAPA-RTVVFDNLRKFDGREFRQ--LLPGEYTQMAGRAGR 825 (1379)
Q Consensus 789 NiPa-~tvVI~~~~kfDg~~~rp--ls~~eyiQmaGRAGR 825 (1379)
|+|. +++||+ ||.+.++- -....|.|+.||+-+
T Consensus 395 DiP~~IryVI~----y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 395 DLPERIRYAIF----YGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred CCCcceeEEEE----eCCCCEEEeccccccCHHHHHHHHh
Confidence 9999 799998 88854332 246789999999963
No 77
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=1.9e-27 Score=310.11 Aligned_cols=342 Identities=17% Similarity=0.189 Sum_probs=231.5
Q ss_pred CHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHH-Hh--cCCcEEEecchHHHHHHHHHHHhccc--cEEEEec--
Q 039491 402 DNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALA-TK--HCTRAVYTAPIKTISNQKYRDFSGKF--DVGLLTG-- 474 (1379)
Q Consensus 402 ~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~-l~--~~~raIylsPtkaLsnQk~~~~~~~f--~VglltG-- 474 (1379)
..+..+.+..|..++.++|+|+||||||.. +|.... .. ...+++++.|.+--+...++++.+.+ .+|...|
T Consensus 69 ~~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~ 146 (1283)
T TIGR01967 69 SAKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYK 146 (1283)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeE
Confidence 444567778888889999999999999984 342222 22 23478889999988888888877766 4544444
Q ss_pred ---CcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccC-CCCCccchhH-HHHHHHHcCccceEEEecccCCCh
Q 039491 475 ---DVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVH-YVNDIERGVV-WEEVIIMLPRHINIVLLSATVPNT 549 (1379)
Q Consensus 475 ---dv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH-~l~d~~rG~v-~eeii~~Lp~~vqiIlLSATvpN~ 549 (1379)
+....++..|.|||+++|..++.... .+.++++||||||| +..+.++... ...++.. .+..|+|+||||+. .
T Consensus 147 vR~~~~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlIlmSATld-~ 223 (1283)
T TIGR01967 147 VRFHDQVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIIITSATID-P 223 (1283)
T ss_pred EcCCcccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEEEEeCCcC-H
Confidence 44456678999999999999887653 58999999999999 4666554432 3333332 35689999999995 5
Q ss_pred HHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCc
Q 039491 550 VEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPR 629 (1379)
Q Consensus 550 ~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 629 (1379)
..|+++++. .++ +..+.+..|++.++.+.. .+... .
T Consensus 224 ~~fa~~F~~---apv--I~V~Gr~~PVev~Y~~~~-----~~~~~---~------------------------------- 259 (1283)
T TIGR01967 224 ERFSRHFNN---API--IEVSGRTYPVEVRYRPLV-----EEQED---D------------------------------- 259 (1283)
T ss_pred HHHHHHhcC---CCE--EEECCCcccceeEEeccc-----ccccc---h-------------------------------
Confidence 678888763 233 333344445544322110 00000 0
Q ss_pred ccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCC
Q 039491 630 DGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGID 709 (1379)
Q Consensus 630 ~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~ 709 (1379)
.......+..++..+.....+.+|||++++.+++.+++.|.+.+
T Consensus 260 ------------------------------------~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~ 303 (1283)
T TIGR01967 260 ------------------------------------DLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRN 303 (1283)
T ss_pred ------------------------------------hhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcC
Confidence 00011222333444434455799999999999999999997643
Q ss_pred CCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCC
Q 039491 710 LTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVN 789 (1379)
Q Consensus 710 l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GIN 789 (1379)
+.. .-|..+||+|++.+|+.++..+ +..+||+||+++++|||
T Consensus 304 ~~~------------------------------------~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLT 345 (1283)
T TIGR01967 304 LRH------------------------------------TEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLT 345 (1283)
T ss_pred CCC------------------------------------cEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccc
Confidence 221 1266799999999999986544 34799999999999999
Q ss_pred CCCceEEEccc----cccCCc------ccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHH-hcCCCc
Q 039491 790 APARTVVFDNL----RKFDGR------EFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHII-VGSATR 858 (1379)
Q Consensus 790 iPa~tvVI~~~----~kfDg~------~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li-~g~~~~ 858 (1379)
+|++++||+.. ..||.. ...+.|..+|.||+|||||.| .|+||.+++.+ .+..+. ...|+.
T Consensus 346 IpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~-----~~~~~~~~~~PEI 417 (1283)
T TIGR01967 346 VPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEE-----DFNSRPEFTDPEI 417 (1283)
T ss_pred cCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHH-----HHHhhhhccCccc
Confidence 99999999842 335443 123568899999999999998 49999998643 233332 345555
Q ss_pred ccccccccHHHHHHHHhhc
Q 039491 859 LESQFRLTYIMILHLLRVE 877 (1379)
Q Consensus 859 L~S~f~lty~miLnLlr~e 877 (1379)
+.+.+. +++|.+..++
T Consensus 418 lR~~L~---~viL~l~~lg 433 (1283)
T TIGR01967 418 LRTNLA---SVILQMLALR 433 (1283)
T ss_pred ccccHH---HHHHHHHhcC
Confidence 555544 6777776543
No 78
>PRK14701 reverse gyrase; Provisional
Probab=99.96 E-value=1.7e-27 Score=319.36 Aligned_cols=314 Identities=14% Similarity=0.105 Sum_probs=213.7
Q ss_pred cccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecc
Q 039491 372 AWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAP 451 (1379)
Q Consensus 372 ~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsP 451 (1379)
.|..+.......+.|.+. +...++|+|+++|+++++.+.+|++++++||||+|||+++..+.+.....+.+++|++|
T Consensus 54 ~~~~~~~~~~~~~~~~~~---f~~~~G~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~P 130 (1638)
T PRK14701 54 FWEDFYILWNEVEEFEEF---FEKITGFEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILP 130 (1638)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHhhCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 444443333334444442 33458999999999999999999999999999999999655554444456789999999
Q ss_pred hHHHHHHHHHHHhccc-------cEEEEecCccc-----------CCCCceeeecHHHHHHHHhcCcccCCCccEEEEec
Q 039491 452 IKTISNQKYRDFSGKF-------DVGLLTGDVSL-----------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDE 513 (1379)
Q Consensus 452 tkaLsnQk~~~~~~~f-------~VglltGdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DE 513 (1379)
|++|+.|++..++..+ .+..++|+.+. +.+.+|+|+||+.|...+.... ..+++++|+||
T Consensus 131 TreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~--~~~i~~iVVDE 208 (1638)
T PRK14701 131 TTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMK--HLKFDFIFVDD 208 (1638)
T ss_pred HHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHh--hCCCCEEEEEC
Confidence 9999999999998854 45667887763 2347999999998877654321 26799999999
Q ss_pred cCCCCCc-----------cchhHHHH----HH----------------------HHcCccce-EEEecccCCChHHHHHH
Q 039491 514 VHYVNDI-----------ERGVVWEE----VI----------------------IMLPRHIN-IVLLSATVPNTVEFADW 555 (1379)
Q Consensus 514 aH~l~d~-----------~rG~v~ee----ii----------------------~~Lp~~vq-iIlLSATvpN~~efa~w 555 (1379)
||+|.++ ++.....+ ++ ..+|...+ ++++|||.+...+...+
T Consensus 209 AD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l 288 (1638)
T PRK14701 209 VDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKL 288 (1638)
T ss_pred ceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHH
Confidence 9999864 33322221 21 12344455 67799998864444444
Q ss_pred HhhhcCCcEEEEccCCCCc--CceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCccccc
Q 039491 556 IGRTKQKKIRVTGTTKRPV--PLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGAR 633 (1379)
Q Consensus 556 l~~~~~~~i~vi~t~~Rpv--pLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1379)
+. ....+.....++. .+.++++.. +
T Consensus 289 ~~----~~l~f~v~~~~~~lr~i~~~yi~~-------~------------------------------------------ 315 (1638)
T PRK14701 289 YR----ELLGFEVGSGRSALRNIVDVYLNP-------E------------------------------------------ 315 (1638)
T ss_pred hh----cCeEEEecCCCCCCCCcEEEEEEC-------C------------------------------------------
Confidence 42 2222222222221 112221100 0
Q ss_pred ccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhH---HHHHHHHhhcCCC
Q 039491 634 AQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNH---CDKLADGMSGIDL 710 (1379)
Q Consensus 634 ~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~---ce~lA~~L~~~~l 710 (1379)
.... ..++..+... +..+||||+|++. |+.++..|...|+
T Consensus 316 ---------------------------------~~~k---~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi 358 (1638)
T PRK14701 316 ---------------------------------KIIK---EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGF 358 (1638)
T ss_pred ---------------------------------HHHH---HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCC
Confidence 0011 2344444443 4689999999886 5899999988766
Q ss_pred CCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEec----ccccc
Q 039491 711 TSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFST----ETFAM 786 (1379)
Q Consensus 711 ~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVAT----etla~ 786 (1379)
. ++.+||+ |..+++.|++|.++||||| ++++|
T Consensus 359 ~---------------------------------------a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaR 394 (1638)
T PRK14701 359 K---------------------------------------IELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVR 394 (1638)
T ss_pred e---------------------------------------EEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEe
Confidence 5 3458886 8899999999999999999 48999
Q ss_pred cCCCCC-ceEEEccccccCCcccccCCHHHHH-------------HHhcccCCCCCC
Q 039491 787 GVNAPA-RTVVFDNLRKFDGREFRQLLPGEYT-------------QMAGRAGRRGLD 829 (1379)
Q Consensus 787 GINiPa-~tvVI~~~~kfDg~~~rpls~~eyi-------------QmaGRAGRrG~d 829 (1379)
|||+|+ ++.||+ ||.+.|+ .+...|. ++.|||||.|..
T Consensus 395 GIDiP~~Vryvi~----~~~Pk~~-~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 395 GLDLPERIRFAVF----YGVPKFR-FRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred cCccCCccCEEEE----eCCCCCC-cchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 999998 899988 7775433 2444444 455999999965
No 79
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.96 E-value=3.7e-27 Score=311.08 Aligned_cols=287 Identities=18% Similarity=0.174 Sum_probs=189.4
Q ss_pred cccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHH-hcCCcEEEec
Q 039491 372 AWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALAT-KHCTRAVYTA 450 (1379)
Q Consensus 372 ~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l-~~~~raIyls 450 (1379)
.|............|.++ +....+|+|+++|+.+++.+..|++++++||||+|||..+ ++++..+ ..+.+++|++
T Consensus 53 ~~~~~~~~~~~~~~f~~~---f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~-l~~~~~l~~~g~~vLIL~ 128 (1171)
T TIGR01054 53 ALKEYCSIDEELKEFEEF---FKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFG-LAMSLFLAKKGKRCYIIL 128 (1171)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHHHHHhcCCeEEEEe
Confidence 343333333334444443 3334778899999999999999999999999999999744 4444433 5678999999
Q ss_pred chHHHHHHHHHHHhccc--------cEEEEecCccc-----------CCCCceeeecHHHHHHHHhcCcccCCCccEEEE
Q 039491 451 PIKTISNQKYRDFSGKF--------DVGLLTGDVSL-----------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIF 511 (1379)
Q Consensus 451 PtkaLsnQk~~~~~~~f--------~VglltGdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~ 511 (1379)
||++|+.|+++.++..+ .++.++|+.+. +.+.+|+|+||+.|...+.+-. .+++++|+
T Consensus 129 PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~---~~~~~iVv 205 (1171)
T TIGR01054 129 PTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG---PKFDFIFV 205 (1171)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc---CCCCEEEE
Confidence 99999999999998865 24457787653 2347999999999987765421 18999999
Q ss_pred eccCCCCCccchh------------HHHHH----------------------HHHcCccce--EEEeccc-CCChHHHHH
Q 039491 512 DEVHYVNDIERGV------------VWEEV----------------------IIMLPRHIN--IVLLSAT-VPNTVEFAD 554 (1379)
Q Consensus 512 DEaH~l~d~~rG~------------v~eei----------------------i~~Lp~~vq--iIlLSAT-vpN~~efa~ 554 (1379)
||||.|.+..++. .++.+ +..+|...| ++++||| .|..... .
T Consensus 206 DEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~-~ 284 (1171)
T TIGR01054 206 DDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA-K 284 (1171)
T ss_pred eChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH-H
Confidence 9999999854321 12222 223455444 6778999 4543210 1
Q ss_pred HHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccc
Q 039491 555 WIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARA 634 (1379)
Q Consensus 555 wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1379)
++.... .+.+-....-.-.+.+++... +
T Consensus 285 l~r~ll--~~~v~~~~~~~r~I~~~~~~~-------~------------------------------------------- 312 (1171)
T TIGR01054 285 LFRELL--GFEVGGGSDTLRNVVDVYVED-------E------------------------------------------- 312 (1171)
T ss_pred Hccccc--ceEecCccccccceEEEEEec-------c-------------------------------------------
Confidence 111100 011100000000111111000 0
Q ss_pred cccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCCh---hHHHHHHHHhhcCCCC
Q 039491 635 QKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSK---NHCDKLADGMSGIDLT 711 (1379)
Q Consensus 635 ~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Sr---k~ce~lA~~L~~~~l~ 711 (1379)
.... .++..+... +.++||||+++ +.|++++..|.+.|+.
T Consensus 313 ---------------------------------~~~~---~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~ 355 (1171)
T TIGR01054 313 ---------------------------------DLKE---TLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVK 355 (1171)
T ss_pred ---------------------------------cHHH---HHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCce
Confidence 0011 233333333 36899999999 9999999999876654
Q ss_pred CchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEe----ccccccc
Q 039491 712 SSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFS----TETFAMG 787 (1379)
Q Consensus 712 ~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVA----Tetla~G 787 (1379)
++.+||+|+ +.+++.|++|.++|||| |++++||
T Consensus 356 ---------------------------------------a~~lhg~~~----~~~l~~Fr~G~~~vLVata~~tdv~aRG 392 (1171)
T TIGR01054 356 ---------------------------------------AVAYHATKP----KEDYEKFAEGEIDVLIGVASYYGTLVRG 392 (1171)
T ss_pred ---------------------------------------EEEEeCCCC----HHHHHHHHcCCCCEEEEeccccCccccc
Confidence 456999997 36889999999999999 4899999
Q ss_pred CCCCC-ceEEEc
Q 039491 788 VNAPA-RTVVFD 798 (1379)
Q Consensus 788 INiPa-~tvVI~ 798 (1379)
||+|+ +++||+
T Consensus 393 IDip~~V~~vI~ 404 (1171)
T TIGR01054 393 LDLPERVRYAVF 404 (1171)
T ss_pred CCCCccccEEEE
Confidence 99999 688876
No 80
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.95 E-value=6e-28 Score=272.17 Aligned_cols=338 Identities=19% Similarity=0.249 Sum_probs=230.4
Q ss_pred ccCCCC--CCHHHHHHHHHHHC-CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEE
Q 039491 395 LDFPFE--LDNFQKEAIYYLEN-GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVG 470 (1379)
Q Consensus 395 ~~~pFe--L~~~Q~eAI~~L~~-g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~Vg 470 (1379)
+.|+|. -++.|.+|+.++.+ +++|+|++||||||++||.+|.+.+ +..+|+++|..||...+...+...- .+.
T Consensus 13 K~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---~gITIV~SPLiALIkDQiDHL~~LKVp~~ 89 (641)
T KOG0352|consen 13 KLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---GGITIVISPLIALIKDQIDHLKRLKVPCE 89 (641)
T ss_pred HHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---CCeEEEehHHHHHHHHHHHHHHhcCCchh
Confidence 457877 47999999999865 4699999999999999999987654 5589999999999999988888754 333
Q ss_pred EEecCcc-------------cCCCCceeeecHHHHHHH----HhcCcccCCCccEEEEeccCCCCCccchhHHH-----H
Q 039491 471 LLTGDVS-------------LRPEASCLIMTTEILRSM----LYRGADIIRDIEWVIFDEVHYVNDIERGVVWE-----E 528 (1379)
Q Consensus 471 lltGdv~-------------in~~a~IlV~TpEiL~sm----L~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~e-----e 528 (1379)
-+....+ ..++..+|..|||....- +.++-..-..+.++|+||||++..|+....-. +
T Consensus 90 SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~ 169 (641)
T KOG0352|consen 90 SLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGS 169 (641)
T ss_pred HhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhh
Confidence 3333222 356678999999855321 11222223457899999999999875332222 1
Q ss_pred HHHHcCccceEEEecccCCChH--HHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHH
Q 039491 529 VIIMLPRHINIVLLSATVPNTV--EFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDA 606 (1379)
Q Consensus 529 ii~~Lp~~vqiIlLSATvpN~~--efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~ 606 (1379)
+-..+ .++..+.||||-.... +++.-+. .++|+-++.|+.-.-.| ++ .+ --+.+..+.|....+.
T Consensus 170 LRS~~-~~vpwvALTATA~~~VqEDi~~qL~--L~~PVAiFkTP~FR~NL----FY-----D~-~~K~~I~D~~~~LaDF 236 (641)
T KOG0352|consen 170 LRSVC-PGVPWVALTATANAKVQEDIAFQLK--LRNPVAIFKTPTFRDNL----FY-----DN-HMKSFITDCLTVLADF 236 (641)
T ss_pred HHhhC-CCCceEEeecccChhHHHHHHHHHh--hcCcHHhccCcchhhhh----hH-----HH-HHHHHhhhHhHhHHHH
Confidence 11223 4789999999965443 3333333 34566666554322111 11 00 0111111111111111
Q ss_pred HHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCC
Q 039491 607 YKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLL 686 (1379)
Q Consensus 607 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~ 686 (1379)
-......... .+.-.+.-.+
T Consensus 237 ~~~~LG~~~~------------------------------------------------------------~~~~~K~~~G 256 (641)
T KOG0352|consen 237 SSSNLGKHEK------------------------------------------------------------ASQNKKTFTG 256 (641)
T ss_pred HHHhcCChhh------------------------------------------------------------hhcCCCCcCc
Confidence 1000000000 0000011135
Q ss_pred CEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHH
Q 039491 687 PVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVI 766 (1379)
Q Consensus 687 pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~V 766 (1379)
..||||.||..||.+|-.|...|+.+.. +|+||...+|..|
T Consensus 257 CGIVYCRTR~~cEq~AI~l~~~Gi~A~A---------------------------------------YHAGLK~~ERTeV 297 (641)
T KOG0352|consen 257 CGIVYCRTRNECEQVAIMLEIAGIPAMA---------------------------------------YHAGLKKKERTEV 297 (641)
T ss_pred ceEEEeccHHHHHHHHHHhhhcCcchHH---------------------------------------HhcccccchhHHH
Confidence 7899999999999999999887777643 8999999999999
Q ss_pred HHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHH
Q 039491 767 EMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGES 846 (1379)
Q Consensus 767 e~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~ 846 (1379)
.+.+.++.+.|++||..|.||||-|.++.||+ |+. +-+..-|.|-+|||||.|.. .+|=+++..+ +..
T Consensus 298 Qe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH----W~~----~qn~AgYYQESGRAGRDGk~--SyCRLYYsR~--D~~ 365 (641)
T KOG0352|consen 298 QEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH----WSP----SQNLAGYYQESGRAGRDGKR--SYCRLYYSRQ--DKN 365 (641)
T ss_pred HHHHhcCCCCEEEEEeccccccCCcceeEEEe----cCc----hhhhHHHHHhccccccCCCc--cceeeeeccc--chH
Confidence 99999999999999999999999999999999 998 88999999999999999976 7777777654 556
Q ss_pred HHHHHHhcCCCcc
Q 039491 847 DLKHIIVGSATRL 859 (1379)
Q Consensus 847 ~l~~li~g~~~~L 859 (1379)
.+.-++.++..++
T Consensus 366 ~i~FLi~~e~akl 378 (641)
T KOG0352|consen 366 ALNFLVSGELAKL 378 (641)
T ss_pred HHHHHHhhHHHHH
Confidence 6666666554433
No 81
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=1.2e-26 Score=280.35 Aligned_cols=307 Identities=21% Similarity=0.346 Sum_probs=226.5
Q ss_pred cCCCCCCHHHHHHHHHHHCC------CcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc--
Q 039491 396 DFPFELDNFQKEAIYYLENG------DSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-- 467 (1379)
Q Consensus 396 ~~pFeL~~~Q~eAI~~L~~g------~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-- 467 (1379)
..||+||.-|++++..|... .+=++++..|||||+||.+|++.+...|.++..++||--||+|.|+.+.+.|
T Consensus 258 ~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~ 337 (677)
T COG1200 258 ALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEP 337 (677)
T ss_pred hCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhh
Confidence 58999999999999998654 3569999999999999999999999999999999999999999999999998
Q ss_pred ---cEEEEecCcc-----------cCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc
Q 039491 468 ---DVGLLTGDVS-----------LRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML 533 (1379)
Q Consensus 468 ---~VglltGdv~-----------in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L 533 (1379)
+|+++||.+. .+.+.+|+|+|...+. ....+.++.+||+||=|+. |+.-...+..-
T Consensus 338 ~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ-----d~V~F~~LgLVIiDEQHRF-----GV~QR~~L~~K 407 (677)
T COG1200 338 LGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ-----DKVEFHNLGLVIIDEQHRF-----GVHQRLALREK 407 (677)
T ss_pred cCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh-----cceeecceeEEEEeccccc-----cHHHHHHHHHh
Confidence 6999999886 3567899999986553 3457899999999999975 66666666555
Q ss_pred Cc-cceEEEeccc-CCChHHHHHHHhhhcCCcEEEEcc-CCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhh
Q 039491 534 PR-HINIVLLSAT-VPNTVEFADWIGRTKQKKIRVTGT-TKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRK 610 (1379)
Q Consensus 534 p~-~vqiIlLSAT-vpN~~efa~wl~~~~~~~i~vi~t-~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~ 610 (1379)
.. .+.++.|||| +|.+..+.-+-.. ++.++.. +.-..|++.+.....
T Consensus 408 G~~~Ph~LvMTATPIPRTLAlt~fgDl----dvS~IdElP~GRkpI~T~~i~~~-------------------------- 457 (677)
T COG1200 408 GEQNPHVLVMTATPIPRTLALTAFGDL----DVSIIDELPPGRKPITTVVIPHE-------------------------- 457 (677)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHhccc----cchhhccCCCCCCceEEEEeccc--------------------------
Confidence 55 6889999999 7777654332211 1222221 122234444433211
Q ss_pred ccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHH-HHHHHHhCCCCCEE
Q 039491 611 NLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLT-LINKLSKKSLLPVV 689 (1379)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Li~~L~~~~~~pvI 689 (1379)
....+.. +-+.+. .+.++.
T Consensus 458 ----------------------------------------------------------~~~~v~e~i~~ei~--~GrQaY 477 (677)
T COG1200 458 ----------------------------------------------------------RRPEVYERIREEIA--KGRQAY 477 (677)
T ss_pred ----------------------------------------------------------cHHHHHHHHHHHHH--cCCEEE
Confidence 1222222 223333 357899
Q ss_pred EEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHh-hccceEEecCCCChHHHHHHHH
Q 039491 690 IFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSL-LRRGIAIHHAGLLPIVKEVIEM 768 (1379)
Q Consensus 690 VFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~l-L~rGIavhHggL~~~~Re~Ve~ 768 (1379)
|-|+-..+.|.+. | .+.. ... ..+... -.+.|+..||.|++.+|+.|.+
T Consensus 478 ~VcPLIeESE~l~--l-----~~a~---~~~--------------------~~L~~~~~~~~vgL~HGrm~~~eKd~vM~ 527 (677)
T COG1200 478 VVCPLIEESEKLE--L-----QAAE---ELY--------------------EELKSFLPELKVGLVHGRMKPAEKDAVME 527 (677)
T ss_pred EEeccccccccch--h-----hhHH---HHH--------------------HHHHHHcccceeEEEecCCChHHHHHHHH
Confidence 9999887776332 1 0000 000 111111 1345999999999999999999
Q ss_pred HhcCCCeeEEEecccccccCCCCCceEE-EccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCC
Q 039491 769 LFCRGVVKVLFSTETFAMGVNAPARTVV-FDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEI 842 (1379)
Q Consensus 769 lF~~G~ikVLVATetla~GINiPa~tvV-I~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~ 842 (1379)
.|++|+++|||||.+.+.|||+|+.++. |....+|+. +...|..||.||.+.. ++|++++.+..
T Consensus 528 ~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGL--------aQLHQLRGRVGRG~~q--SyC~Ll~~~~~ 592 (677)
T COG1200 528 AFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGL--------AQLHQLRGRVGRGDLQ--SYCVLLYKPPL 592 (677)
T ss_pred HHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhH--------HHHHHhccccCCCCcc--eEEEEEeCCCC
Confidence 9999999999999999999999999984 554444544 7899999999998865 99999998764
No 82
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.95 E-value=2.4e-27 Score=302.04 Aligned_cols=318 Identities=20% Similarity=0.306 Sum_probs=238.1
Q ss_pred cCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEEEe
Q 039491 396 DFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLT 473 (1379)
Q Consensus 396 ~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~Vgllt 473 (1379)
.|++. +++.|.+||..++.|+++||.+|||+||++||.+|.... +.-+|+++|..+|...+...+.... ....++
T Consensus 259 ~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~---~gitvVISPL~SLm~DQv~~L~~~~I~a~~L~ 335 (941)
T KOG0351|consen 259 VFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL---GGVTVVISPLISLMQDQVTHLSKKGIPACFLS 335 (941)
T ss_pred HhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc---CCceEEeccHHHHHHHHHHhhhhcCcceeecc
Confidence 57888 999999999999999999999999999999998876554 4589999999999999998886655 677777
Q ss_pred cCccc-------------CCCCceeeecHHHHHH--HHhcCcccCCC---ccEEEEeccCCCCCcc--chhHHHHH---H
Q 039491 474 GDVSL-------------RPEASCLIMTTEILRS--MLYRGADIIRD---IEWVIFDEVHYVNDIE--RGVVWEEV---I 530 (1379)
Q Consensus 474 Gdv~i-------------n~~a~IlV~TpEiL~s--mL~~~~~~l~~---v~lVI~DEaH~l~d~~--rG~v~eei---i 530 (1379)
++... ++..+|+.+|||.+.. ++.+....+.. +.++|+||||++..|+ |.+.+..+ .
T Consensus 336 s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~ 415 (941)
T KOG0351|consen 336 SIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLR 415 (941)
T ss_pred ccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHH
Confidence 76553 2357899999998743 12211122333 8999999999999874 22233322 2
Q ss_pred HHcCccceEEEecccCCCh--HHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHH
Q 039491 531 IMLPRHINIVLLSATVPNT--VEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYK 608 (1379)
Q Consensus 531 ~~Lp~~vqiIlLSATvpN~--~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~ 608 (1379)
+..| .+.+|+||||..-. .++.+-++.. .+.++.+..-+..|...+.+..
T Consensus 416 ~~~~-~vP~iALTATAT~~v~~DIi~~L~l~---~~~~~~~sfnR~NL~yeV~~k~------------------------ 467 (941)
T KOG0351|consen 416 IRFP-GVPFIALTATATERVREDVIRSLGLR---NPELFKSSFNRPNLKYEVSPKT------------------------ 467 (941)
T ss_pred hhCC-CCCeEEeehhccHHHHHHHHHHhCCC---CcceecccCCCCCceEEEEecc------------------------
Confidence 2334 38999999997543 3666666532 2334444333333322221110
Q ss_pred hhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHH-HhCCCCC
Q 039491 609 RKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKL-SKKSLLP 687 (1379)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L-~~~~~~p 687 (1379)
.+.....+.... ......+
T Consensus 468 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~s 487 (941)
T KOG0351|consen 468 ------------------------------------------------------------DKDALLDILEESKLRHPDQS 487 (941)
T ss_pred ------------------------------------------------------------CccchHHHHHHhhhcCCCCC
Confidence 001111122222 2344579
Q ss_pred EEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHH
Q 039491 688 VVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIE 767 (1379)
Q Consensus 688 vIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve 767 (1379)
.||||.+++.|+.++..|+..+..+. .+|+||++.+|+.|.
T Consensus 488 ~IIYC~sr~~ce~vs~~L~~~~~~a~---------------------------------------~YHAGl~~~~R~~Vq 528 (941)
T KOG0351|consen 488 GIIYCLSRKECEQVSAVLRSLGKSAA---------------------------------------FYHAGLPPKERETVQ 528 (941)
T ss_pred eEEEeCCcchHHHHHHHHHHhchhhH---------------------------------------hhhcCCCHHHHHHHH
Confidence 99999999999999999998774443 499999999999999
Q ss_pred HHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHH
Q 039491 768 MLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESD 847 (1379)
Q Consensus 768 ~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~ 847 (1379)
..|..+.++|++||=.|.||||.|+++.||| |.. |.+...|.|-+|||||.|.. ..|+++++.. +...
T Consensus 529 ~~w~~~~~~VivATVAFGMGIdK~DVR~ViH----~~l----Pks~E~YYQE~GRAGRDG~~--s~C~l~y~~~--D~~~ 596 (941)
T KOG0351|consen 529 KAWMSDKIRVIVATVAFGMGIDKPDVRFVIH----YSL----PKSFEGYYQEAGRAGRDGLP--SSCVLLYGYA--DISE 596 (941)
T ss_pred HHHhcCCCeEEEEEeeccCCCCCCceeEEEE----CCC----chhHHHHHHhccccCcCCCc--ceeEEecchh--HHHH
Confidence 9999999999999999999999999999999 988 99999999999999999986 8889888766 6788
Q ss_pred HHHHHhcC
Q 039491 848 LKHIIVGS 855 (1379)
Q Consensus 848 l~~li~g~ 855 (1379)
++.|+...
T Consensus 597 l~~ll~s~ 604 (941)
T KOG0351|consen 597 LRRLLTSG 604 (941)
T ss_pred HHHHHHcc
Confidence 88888866
No 83
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.94 E-value=5.7e-25 Score=267.18 Aligned_cols=327 Identities=19% Similarity=0.183 Sum_probs=209.8
Q ss_pred ccCCCCCCHHHHHHHHHHHC----CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc---
Q 039491 395 LDFPFELDNFQKEAIYYLEN----GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF--- 467 (1379)
Q Consensus 395 ~~~pFeL~~~Q~eAI~~L~~----g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f--- 467 (1379)
..+.++|+++|++|+..+.+ ++..++++|||+|||+++..+|..... +++|++|+++|..|+++.+.+.+
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~---~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR---STLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC---CEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 34567799999999999987 889999999999999998877777643 39999999999999998888887
Q ss_pred -cEEEEecCcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccC
Q 039491 468 -DVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATV 546 (1379)
Q Consensus 468 -~VglltGdv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATv 546 (1379)
.+|.+.|+..-.....|.|+|...+.....-.....+.+++|||||||++... ....++.++.....+++||||+
T Consensus 108 ~~~g~~~~~~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~----~~~~~~~~~~~~~~~LGLTATp 183 (442)
T COG1061 108 DEIGIYGGGEKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP----SYRRILELLSAAYPRLGLTATP 183 (442)
T ss_pred cccceecCceeccCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH----HHHHHHHhhhcccceeeeccCc
Confidence 36888776553322689999999887642001122347999999999999753 2333444444333399999997
Q ss_pred CChH-----HHHHHHhhhcCCcEEEEcc-----CCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhcccccc
Q 039491 547 PNTV-----EFADWIGRTKQKKIRVTGT-----TKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAAS 616 (1379)
Q Consensus 547 pN~~-----efa~wl~~~~~~~i~vi~t-----~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~ 616 (1379)
+... ++...++ ..++-+.. ...-.|...+.+... +.....................
T Consensus 184 ~R~D~~~~~~l~~~~g----~~vy~~~~~~li~~g~Lap~~~~~i~~~----------~t~~~~~~~~~~~~~~~~~~~~ 249 (442)
T COG1061 184 EREDGGRIGDLFDLIG----PIVYEVSLKELIDEGYLAPYKYVEIKVT----------LTEDEEREYAKESARFRELLRA 249 (442)
T ss_pred eeecCCchhHHHHhcC----CeEeecCHHHHHhCCCccceEEEEEEec----------cchHHHHHhhhhhhhhhhhhhh
Confidence 6333 2233332 11222211 112222222211110 0000000000000000000000
Q ss_pred CCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhC-CCCCEEEEeCCh
Q 039491 617 GATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKK-SLLPVVIFCFSK 695 (1379)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~-~~~pvIVFv~Sr 695 (1379)
++. ...+ ... . .........+..+-..+... ...+++|||.++
T Consensus 250 -------------~~~-~~~~------~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~ 293 (442)
T COG1061 250 -------------RGT-LRAE------NEA---R-------------RIAIASERKIAAVRGLLLKHARGDKTLIFASDV 293 (442)
T ss_pred -------------hhh-hhHH------HHH---H-------------HHhhccHHHHHHHHHHHHHhcCCCcEEEEeccH
Confidence 000 0000 000 0 00000122333333344433 467999999999
Q ss_pred hHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCe
Q 039491 696 NHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVV 775 (1379)
Q Consensus 696 k~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~i 775 (1379)
.+++.++..+...+. +....|..+..+|+.++..|+.|.+
T Consensus 294 ~~a~~i~~~~~~~~~----------------------------------------~~~it~~t~~~eR~~il~~fr~g~~ 333 (442)
T COG1061 294 EHAYEIAKLFLAPGI----------------------------------------VEAITGETPKEEREAILERFRTGGI 333 (442)
T ss_pred HHHHHHHHHhcCCCc----------------------------------------eEEEECCCCHHHHHHHHHHHHcCCC
Confidence 999999999876433 2357899999999999999999999
Q ss_pred eEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCC
Q 039491 776 KVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRR 826 (1379)
Q Consensus 776 kVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRr 826 (1379)
++||++.++.+|+|+|.++++|. -.+ .-|+..|+||+||.-|.
T Consensus 334 ~~lv~~~vl~EGvDiP~~~~~i~----~~~----t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 334 KVLVTVKVLDEGVDIPDADVLII----LRP----TGSRRLFIQRLGRGLRP 376 (442)
T ss_pred CEEEEeeeccceecCCCCcEEEE----eCC----CCcHHHHHHHhhhhccC
Confidence 99999999999999999999987 334 56899999999999994
No 84
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=5.8e-25 Score=276.84 Aligned_cols=350 Identities=16% Similarity=0.126 Sum_probs=226.5
Q ss_pred hccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-----c
Q 039491 394 ALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-----D 468 (1379)
Q Consensus 394 a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-----~ 468 (1379)
.+.++..|++.|..+...+.+|+ ++.+.||+|||++|.+|++.....|..+.+++|++.||.|.+..+...+ .
T Consensus 72 ~R~~g~~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~ 149 (790)
T PRK09200 72 KRVLGMRPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLT 149 (790)
T ss_pred HHHhCCCCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCe
Confidence 34577778899999999888886 9999999999999999998777789999999999999999999988876 7
Q ss_pred EEEEecCccc------CCCCceeeecHHHH-HHHHhcC------cccCCCccEEEEeccCCCC-Cccchh----------
Q 039491 469 VGLLTGDVSL------RPEASCLIMTTEIL-RSMLYRG------ADIIRDIEWVIFDEVHYVN-DIERGV---------- 524 (1379)
Q Consensus 469 VglltGdv~i------n~~a~IlV~TpEiL-~smL~~~------~~~l~~v~lVI~DEaH~l~-d~~rG~---------- 524 (1379)
||+++|+.+. ...++|+|+|++.| .++|... ...++.+.++|+||||.|. |..|.+
T Consensus 150 v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~~ 229 (790)
T PRK09200 150 VGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQ 229 (790)
T ss_pred EEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCccc
Confidence 9999998872 23589999999877 3433321 2356889999999999874 332222
Q ss_pred -----HHHHHHHHcCc--------cceEEEeccc----------CCCh-----HHHHHHHhhhc-------C--------
Q 039491 525 -----VWEEVIIMLPR--------HINIVLLSAT----------VPNT-----VEFADWIGRTK-------Q-------- 561 (1379)
Q Consensus 525 -----v~eeii~~Lp~--------~vqiIlLSAT----------vpN~-----~efa~wl~~~~-------~-------- 561 (1379)
.+..++..+.. ..+.+.||.. ++|. .++..|+.... .
T Consensus 230 ~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~~ 309 (790)
T PRK09200 230 SNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYD 309 (790)
T ss_pred cHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEEC
Confidence 12233333322 1233444431 1221 13345554321 1
Q ss_pred CcEEEEcc-CCCC-------------------c------------------CceEEEeecCceeeeccCcccchhhHHHH
Q 039491 562 KKIRVTGT-TKRP-------------------V------------------PLEHCLYYSGEFYKVCENEAFIPQGWKAA 603 (1379)
Q Consensus 562 ~~i~vi~t-~~Rp-------------------v------------------pLe~~l~~~~~l~~i~d~~~f~~~~~~~~ 603 (1379)
+.+.++.. ..|+ + -+-..++-..+--.. .. ..+..
T Consensus 310 ~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t-~~-----~e~~~- 382 (790)
T PRK09200 310 GEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKT-EE-----KEFFE- 382 (790)
T ss_pred CEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChH-HH-----HHHHH-
Confidence 11222211 1110 0 011112211100000 00 00000
Q ss_pred HHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHh-
Q 039491 604 KDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSK- 682 (1379)
Q Consensus 604 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~- 682 (1379)
.+ +.+... .+......+ + -.+ ...-.....++..+++.+..
T Consensus 383 --~Y----~l~v~~----IPt~kp~~r-------------------~------d~~---~~i~~~~~~K~~al~~~i~~~ 424 (790)
T PRK09200 383 --VY----NMEVVQ----IPTNRPIIR-------------------I------DYP---DKVFVTLDEKYKAVIEEVKER 424 (790)
T ss_pred --Hh----CCcEEE----CCCCCCccc-------------------c------cCC---CeEEcCHHHHHHHHHHHHHHH
Confidence 00 000000 000000000 0 000 00001134566667776654
Q ss_pred -CCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChH
Q 039491 683 -KSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPI 761 (1379)
Q Consensus 683 -~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~ 761 (1379)
....|+||||.|++.|+.++..|.+.++.. .++||++...
T Consensus 425 ~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~---------------------------------------~~L~~~~~~~ 465 (790)
T PRK09200 425 HETGRPVLIGTGSIEQSETFSKLLDEAGIPH---------------------------------------NLLNAKNAAK 465 (790)
T ss_pred HhcCCCEEEEeCcHHHHHHHHHHHHHCCCCE---------------------------------------EEecCCccHH
Confidence 357899999999999999999998876653 4699999999
Q ss_pred HHHHHHHHhcCCCeeEEEecccccccCCC---CCce-----EEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEE
Q 039491 762 VKEVIEMLFCRGVVKVLFSTETFAMGVNA---PART-----VVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGT 833 (1379)
Q Consensus 762 ~Re~Ve~lF~~G~ikVLVATetla~GINi---Pa~t-----vVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~ 833 (1379)
+++.+...++.| +|+|||++++||+|+ |.+. +||+ ||. |.+...|.||+|||||.|.. |.
T Consensus 466 e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~----~d~----p~s~r~y~qr~GRtGR~G~~--G~ 533 (790)
T PRK09200 466 EAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIG----TER----MESRRVDLQLRGRSGRQGDP--GS 533 (790)
T ss_pred HHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEe----ccC----CCCHHHHHHhhccccCCCCC--ee
Confidence 988888888877 799999999999999 7998 9999 888 89999999999999999965 99
Q ss_pred EEEEecCC
Q 039491 834 VVVLCRDE 841 (1379)
Q Consensus 834 vIil~~~~ 841 (1379)
++.+++.+
T Consensus 534 s~~~is~e 541 (790)
T PRK09200 534 SQFFISLE 541 (790)
T ss_pred EEEEEcch
Confidence 98888653
No 85
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=5e-25 Score=272.25 Aligned_cols=123 Identities=19% Similarity=0.108 Sum_probs=101.9
Q ss_pred hccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-----c
Q 039491 394 ALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-----D 468 (1379)
Q Consensus 394 a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-----~ 468 (1379)
.+..+..|+++|..+++.+..|+ ++.|.||+|||++|.+|++.....+..+++++||++||.|.+..+...+ .
T Consensus 97 ~R~lg~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGls 174 (656)
T PRK12898 97 GRVLGQRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLT 174 (656)
T ss_pred HHHhCCCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCE
Confidence 34678889999999999999998 9999999999999999999988889999999999999999999988865 8
Q ss_pred EEEEecCccc-----CCCCceeeecHHHH-----HHHHhc---------------------CcccCCCccEEEEeccCCC
Q 039491 469 VGLLTGDVSL-----RPEASCLIMTTEIL-----RSMLYR---------------------GADIIRDIEWVIFDEVHYV 517 (1379)
Q Consensus 469 VglltGdv~i-----n~~a~IlV~TpEiL-----~smL~~---------------------~~~~l~~v~lVI~DEaH~l 517 (1379)
|++++|+.+. ...++|+|+|..-| ++.+.. .....+.+.++|+||||.+
T Consensus 175 v~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSi 254 (656)
T PRK12898 175 VGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSV 254 (656)
T ss_pred EEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecccce
Confidence 9999998763 23579999999544 333321 1123577899999999976
Q ss_pred C
Q 039491 518 N 518 (1379)
Q Consensus 518 ~ 518 (1379)
.
T Consensus 255 L 255 (656)
T PRK12898 255 L 255 (656)
T ss_pred e
Confidence 4
No 86
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.93 E-value=2.4e-24 Score=273.66 Aligned_cols=354 Identities=23% Similarity=0.234 Sum_probs=215.3
Q ss_pred CCCCCCHHHHHHHHHHHC---CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc--cEEE
Q 039491 397 FPFELDNFQKEAIYYLEN---GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF--DVGL 471 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~L~~---g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f--~Vgl 471 (1379)
.+++|++.|++|+..+.+ +.++++.|+||||||.+|..++...+..+.++||++|+++|+.|+++.|++.| .+.+
T Consensus 141 ~~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~ 220 (679)
T PRK05580 141 EPPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAV 220 (679)
T ss_pred CCCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEE
Confidence 577899999999999976 47899999999999999999999999889999999999999999999999988 7999
Q ss_pred EecCccc-----------CCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCcc-chhH--HHHHHH--HcCc
Q 039491 472 LTGDVSL-----------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIE-RGVV--WEEVII--MLPR 535 (1379)
Q Consensus 472 ltGdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~-rG~v--~eeii~--~Lp~ 535 (1379)
++|+.+. +.+.+|+|+|+..+. ..+.++++||+||+|.....+ .+.. ..++.. ....
T Consensus 221 ~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~ 293 (679)
T PRK05580 221 LHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLE 293 (679)
T ss_pred EECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhcc
Confidence 9998763 245799999997663 247899999999999876432 1221 223322 2346
Q ss_pred cceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCc--CceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccc
Q 039491 536 HINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPV--PLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLS 613 (1379)
Q Consensus 536 ~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~Rpv--pLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~ 613 (1379)
++++|++|||.+ ...+.. + ..+....+.-..|+. ++-. ..++|.... ...
T Consensus 294 ~~~~il~SATps-~~s~~~-~---~~g~~~~~~l~~r~~~~~~p~--------v~~id~~~~-----------~~~---- 345 (679)
T PRK05580 294 NIPVVLGSATPS-LESLAN-A---QQGRYRLLRLTKRAGGARLPE--------VEIIDMREL-----------LRG---- 345 (679)
T ss_pred CCCEEEEcCCCC-HHHHHH-H---hccceeEEEeccccccCCCCe--------EEEEechhh-----------hhh----
Confidence 789999999954 322221 1 122333333333321 1111 011110000 000
Q ss_pred cccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeC
Q 039491 614 AASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCF 693 (1379)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~ 693 (1379)
+. + .......+..+-+.+. .+.++|||++
T Consensus 346 ------------------------------------------~~------~-~~ls~~l~~~i~~~l~--~g~qvll~~n 374 (679)
T PRK05580 346 ------------------------------------------EN------G-SFLSPPLLEAIKQRLE--RGEQVLLFLN 374 (679)
T ss_pred ------------------------------------------cc------c-CCCCHHHHHHHHHHHH--cCCeEEEEEc
Confidence 00 0 0001222333333333 2468999999
Q ss_pred ChhH--------HHHHHHHh-hcCCCCCchhhhHH-HHH----------HHHHh-hhccCCCCCchhHHHHHHhhc----
Q 039491 694 SKNH--------CDKLADGM-SGIDLTSSSEKSEI-RVF----------CDKAF-SRLKGSDRNLPQIVRVQSLLR---- 748 (1379)
Q Consensus 694 Srk~--------ce~lA~~L-~~~~l~~~~ek~~i-~~~----------~~~~~-~~L~~edr~lpqi~~l~~lL~---- 748 (1379)
.+.. |...+..= ....++.......+ -.. +-++- ..+.... ....++.+.+.
T Consensus 375 rrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g---~G~e~~~e~l~~~fp 451 (679)
T PRK05580 375 RRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVG---PGTERLEEELAELFP 451 (679)
T ss_pred CCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEee---ccHHHHHHHHHHhCC
Confidence 8643 22221110 00000000000000 000 00000 0000000 11222222222
Q ss_pred -cceEEecCCCCh--HHHHHHHHHhcCCCeeEEEecccccccCCCCCceEE--EccccccCCccccc--CCHHHHHHHhc
Q 039491 749 -RGIAIHHAGLLP--IVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVV--FDNLRKFDGREFRQ--LLPGEYTQMAG 821 (1379)
Q Consensus 749 -rGIavhHggL~~--~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvV--I~~~~kfDg~~~rp--ls~~eyiQmaG 821 (1379)
..|...|+++.. ..++.++..|++|.++|||+|+++++|+|+|.+++| ++........+||. .....|+|++|
T Consensus 452 ~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~G 531 (679)
T PRK05580 452 EARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAG 531 (679)
T ss_pred CCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHh
Confidence 368889999974 678999999999999999999999999999999987 44211111111111 13578999999
Q ss_pred ccCCCCCCCcEEEEEEecCC
Q 039491 822 RAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 822 RAGRrG~d~~G~vIil~~~~ 841 (1379)
||||.+.. |.||+.+...
T Consensus 532 RagR~~~~--g~viiqT~~p 549 (679)
T PRK05580 532 RAGRAEKP--GEVLIQTYHP 549 (679)
T ss_pred hccCCCCC--CEEEEEeCCC
Confidence 99998864 9999988653
No 87
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.93 E-value=4.6e-24 Score=266.44 Aligned_cols=344 Identities=15% Similarity=0.124 Sum_probs=208.8
Q ss_pred CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-----cEEEEecC
Q 039491 401 LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGD 475 (1379)
Q Consensus 401 L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-----~VglltGd 475 (1379)
++|||.+++..+.-++..++.++||+|||++|.+|++.....+..++|++|+++||.|.++.+...+ .|+++.++
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~ 148 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVD 148 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECC
Confidence 3555555555554444479999999999999999988777778889999999999999998886654 78887765
Q ss_pred cc---c-------CCCCceeeecHHHH-HHHHhc------CcccCCCccEEEEeccCCCC-Cccchh-------------
Q 039491 476 VS---L-------RPEASCLIMTTEIL-RSMLYR------GADIIRDIEWVIFDEVHYVN-DIERGV------------- 524 (1379)
Q Consensus 476 v~---i-------n~~a~IlV~TpEiL-~smL~~------~~~~l~~v~lVI~DEaH~l~-d~~rG~------------- 524 (1379)
.. . ...++|+++||+.| .+.|.. ....++.+.++|+||||.|. |..|.+
T Consensus 149 s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~~~~~ 228 (762)
T TIGR03714 149 DPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNL 228 (762)
T ss_pred CCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCccchHH
Confidence 21 1 12579999999988 444422 22457899999999999884 332211
Q ss_pred --HHHHHHHHcCc--------cceEEEeccc----------CCCh-----HHHHHHHhhh-------cC--------CcE
Q 039491 525 --VWEEVIIMLPR--------HINIVLLSAT----------VPNT-----VEFADWIGRT-------KQ--------KKI 564 (1379)
Q Consensus 525 --v~eeii~~Lp~--------~vqiIlLSAT----------vpN~-----~efa~wl~~~-------~~--------~~i 564 (1379)
.+..++..|.+ .-+-+.||-. ++|. .++..|+... ++ +.+
T Consensus 229 y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~~~v 308 (762)
T TIGR03714 229 YHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTNGEV 308 (762)
T ss_pred HHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEE
Confidence 12233344432 1233444421 1111 1223333221 11 111
Q ss_pred EEEcc-CCCC-------------------------------c------CceEEEeecCceeeeccCcccchhhHHHHHHH
Q 039491 565 RVTGT-TKRP-------------------------------V------PLEHCLYYSGEFYKVCENEAFIPQGWKAAKDA 606 (1379)
Q Consensus 565 ~vi~t-~~Rp-------------------------------v------pLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~ 606 (1379)
.++.. ..|+ + .+-..+.--.+--. ... ..|.+ .
T Consensus 309 ~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~-~~~-----~Ef~~---i 379 (762)
T TIGR03714 309 VLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGK-VAE-----KEFIE---T 379 (762)
T ss_pred EEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCh-hHH-----HHHHH---H
Confidence 11111 0110 0 01122222110000 000 01110 0
Q ss_pred HHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHh--CC
Q 039491 607 YKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSK--KS 684 (1379)
Q Consensus 607 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~--~~ 684 (1379)
+.- +... .|......+.. .+ ...-.....++..+++.+.. ..
T Consensus 380 Y~l----~v~~----IPt~kp~~r~d-------------------------~~---d~i~~~~~~K~~ai~~~i~~~~~~ 423 (762)
T TIGR03714 380 YSL----SVVK----IPTNKPIIRID-------------------------YP---DKIYATLPEKLMATLEDVKEYHET 423 (762)
T ss_pred hCC----CEEE----cCCCCCeeeee-------------------------CC---CeEEECHHHHHHHHHHHHHHHhhC
Confidence 000 0000 00000000000 00 00011234566667776644 45
Q ss_pred CCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHH
Q 039491 685 LLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKE 764 (1379)
Q Consensus 685 ~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re 764 (1379)
+.|+||||+|++.++.++..|.+.++.. .++||.+.+.+++
T Consensus 424 ~~pvLIft~s~~~se~ls~~L~~~gi~~---------------------------------------~~L~a~~~~~E~~ 464 (762)
T TIGR03714 424 GQPVLLITGSVEMSEIYSELLLREGIPH---------------------------------------NLLNAQNAAKEAQ 464 (762)
T ss_pred CCCEEEEECcHHHHHHHHHHHHHCCCCE---------------------------------------EEecCCChHHHHH
Confidence 6899999999999999999998866553 4689999999998
Q ss_pred HHHHHhcCCCeeEEEecccccccCCCC---------CceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEE
Q 039491 765 VIEMLFCRGVVKVLFSTETFAMGVNAP---------ARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVV 835 (1379)
Q Consensus 765 ~Ve~lF~~G~ikVLVATetla~GINiP---------a~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vI 835 (1379)
.+...|+.| .|+|||++++||+|+| ++.||++ |+. |....+ .||+|||||.|.. |.++
T Consensus 465 ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit----~~~----ps~rid-~qr~GRtGRqG~~--G~s~ 531 (762)
T TIGR03714 465 IIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGT----ERM----ENSRVD-LQLRGRSGRQGDP--GSSQ 531 (762)
T ss_pred HHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEe----cCC----CCcHHH-HHhhhcccCCCCc--eeEE
Confidence 888888777 7999999999999999 9999999 887 555444 9999999999965 9999
Q ss_pred EEecCC
Q 039491 836 VLCRDE 841 (1379)
Q Consensus 836 il~~~~ 841 (1379)
.+++.+
T Consensus 532 ~~is~e 537 (762)
T TIGR03714 532 FFVSLE 537 (762)
T ss_pred EEEccc
Confidence 888753
No 88
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=6.2e-26 Score=242.04 Aligned_cols=297 Identities=19% Similarity=0.241 Sum_probs=225.5
Q ss_pred cccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc---CCc
Q 039491 370 KEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH---CTR 445 (1379)
Q Consensus 370 ~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~---~~r 445 (1379)
.+.|.++.+.++++.++-+ -+|+ |+..|.++|+...-|-+|++.|..|-|||.||.++-++.+.. ...
T Consensus 41 ssgfrdfllkpellraivd--------cgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vs 112 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVD--------CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVS 112 (387)
T ss_pred ccchhhhhcCHHHHHHHHh--------ccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEE
Confidence 4568888888888888877 7999 999999999999999999999999999999999999888843 357
Q ss_pred EEEecchHHHHHHHHH---HHhccc---cEEEEecCcccCCC-------CceeeecHHHHHHHHhcCcccCCCccEEEEe
Q 039491 446 AVYTAPIKTISNQKYR---DFSGKF---DVGLLTGDVSLRPE-------ASCLIMTTEILRSMLYRGADIIRDIEWVIFD 512 (1379)
Q Consensus 446 aIylsPtkaLsnQk~~---~~~~~f---~VglltGdv~in~~-------a~IlV~TpEiL~smL~~~~~~l~~v~lVI~D 512 (1379)
+++++.||+|+-|+.. +|.++. +|.++.|+..+..+ .+|+|+||+++..+.++....+.++...|+|
T Consensus 113 vlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlD 192 (387)
T KOG0329|consen 113 VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLD 192 (387)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehh
Confidence 8999999999999855 455555 78999999998654 6899999999999999999999999999999
Q ss_pred ccCCCCCc-cchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeecc
Q 039491 513 EVHYVNDI-ERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCE 591 (1379)
Q Consensus 513 EaH~l~d~-~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d 591 (1379)
||+.|.++ +-.....++..+-|...|++++|||+++.. .-.....+++|+.++..+.....|
T Consensus 193 Ecdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskei--RpvC~kFmQdPmEi~vDdE~KLtL--------------- 255 (387)
T KOG0329|consen 193 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEI--RPVCHKFMQDPMEIFVDDEAKLTL--------------- 255 (387)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhh--HHHHHhhhcCchhhhccchhhhhh---------------
Confidence 99988642 234456778889999999999999987642 233333444444443332221111
Q ss_pred CcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhH
Q 039491 592 NEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVS 671 (1379)
Q Consensus 592 ~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1379)
-+.....-.+... ....
T Consensus 256 ------HGLqQ~YvkLke~---------------------------------------------------------eKNr 272 (387)
T KOG0329|consen 256 ------HGLQQYYVKLKEN---------------------------------------------------------EKNR 272 (387)
T ss_pred ------hhHHHHHHhhhhh---------------------------------------------------------hhhh
Confidence 1111111111110 0122
Q ss_pred HHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccce
Q 039491 672 IWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGI 751 (1379)
Q Consensus 672 ~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGI 751 (1379)
++..|++.|. ..+++||+.|..+..
T Consensus 273 kl~dLLd~Le---FNQVvIFvKsv~Rl~---------------------------------------------------- 297 (387)
T KOG0329|consen 273 KLNDLLDVLE---FNQVVIFVKSVQRLS---------------------------------------------------- 297 (387)
T ss_pred hhhhhhhhhh---hcceeEeeehhhhhh----------------------------------------------------
Confidence 3445555554 458999998866510
Q ss_pred EEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCc
Q 039491 752 AIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKI 831 (1379)
Q Consensus 752 avhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~ 831 (1379)
|+ -+ ||||+.|.+|+|+-.+++||+ ||. |-++..|.||+|||||.|. .
T Consensus 298 ------------------f~---kr-~vat~lfgrgmdiervNi~~N----Ydm----p~~~DtYlHrv~rAgrfGt--k 345 (387)
T KOG0329|consen 298 ------------------FQ---KR-LVATDLFGRGMDIERVNIVFN----YDM----PEDSDTYLHRVARAGRFGT--K 345 (387)
T ss_pred ------------------hh---hh-hHHhhhhccccCcccceeeec----cCC----CCCchHHHHHhhhhhcccc--c
Confidence 21 12 789999999999999999999 999 9999999999999999995 5
Q ss_pred EEEEEEecCC
Q 039491 832 GTVVVLCRDE 841 (1379)
Q Consensus 832 G~vIil~~~~ 841 (1379)
|.+|.++.++
T Consensus 346 glaitfvs~e 355 (387)
T KOG0329|consen 346 GLAITFVSDE 355 (387)
T ss_pred cceeehhcch
Confidence 9999998765
No 89
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.93 E-value=4.8e-24 Score=269.89 Aligned_cols=301 Identities=22% Similarity=0.297 Sum_probs=238.7
Q ss_pred hhccCCCCCCHHHHHHHHHHH----CC--CcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhcc
Q 039491 393 LALDFPFELDNFQKEAIYYLE----NG--DSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGK 466 (1379)
Q Consensus 393 ~a~~~pFeL~~~Q~eAI~~L~----~g--~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~ 466 (1379)
|+..|||+-|+=|..||..+. ++ .+=+||+..|-|||-||.=|+..+..+|++|.+++||.-||.|.|+.|++.
T Consensus 587 F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeR 666 (1139)
T COG1197 587 FEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKER 666 (1139)
T ss_pred HHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHH
Confidence 455799999999999999874 34 367999999999999999999999999999999999999999999999999
Q ss_pred c-----cEEEEecCcc-----------cCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHH
Q 039491 467 F-----DVGLLTGDVS-----------LRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVI 530 (1379)
Q Consensus 467 f-----~VglltGdv~-----------in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii 530 (1379)
| +|+.+..=.+ -+...+|+|+|.-.| .....+.++++||+||-|+ ||+.-.|-+
T Consensus 667 F~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlIIDEEqR-----FGVk~KEkL 736 (1139)
T COG1197 667 FAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLIIDEEQR-----FGVKHKEKL 736 (1139)
T ss_pred hcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEEechhh-----cCccHHHHH
Confidence 9 5666654333 144679999997655 3445789999999999995 588889999
Q ss_pred HHcCccceEEEeccc-CCChHHHHHHHhhhcCCcEEEEccC-CCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHH
Q 039491 531 IMLPRHINIVLLSAT-VPNTVEFADWIGRTKQKKIRVTGTT-KRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYK 608 (1379)
Q Consensus 531 ~~Lp~~vqiIlLSAT-vpN~~efa~wl~~~~~~~i~vi~t~-~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~ 608 (1379)
..|..++.++-|||| +|.+...+ ..| -+++.++.|+ .+..|++.|+.+.+
T Consensus 737 K~Lr~~VDvLTLSATPIPRTL~Ms-m~G---iRdlSvI~TPP~~R~pV~T~V~~~d------------------------ 788 (1139)
T COG1197 737 KELRANVDVLTLSATPIPRTLNMS-LSG---IRDLSVIATPPEDRLPVKTFVSEYD------------------------ 788 (1139)
T ss_pred HHHhccCcEEEeeCCCCcchHHHH-Hhc---chhhhhccCCCCCCcceEEEEecCC------------------------
Confidence 999999999999999 78776533 222 3456666654 45567776664322
Q ss_pred hhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCE
Q 039491 609 RKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPV 688 (1379)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pv 688 (1379)
..-....+.+.+.+ ++++
T Consensus 789 ------------------------------------------------------------~~~ireAI~REl~R--gGQv 806 (1139)
T COG1197 789 ------------------------------------------------------------DLLIREAILRELLR--GGQV 806 (1139)
T ss_pred ------------------------------------------------------------hHHHHHHHHHHHhc--CCEE
Confidence 11112233444433 4688
Q ss_pred EEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHH
Q 039491 689 VIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEM 768 (1379)
Q Consensus 689 IVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~ 768 (1379)
..-+|..+..+..+..|+.+-.. ..|++-||.|.+.+-+.|..
T Consensus 807 fYv~NrV~~Ie~~~~~L~~LVPE-------------------------------------arI~vaHGQM~e~eLE~vM~ 849 (1139)
T COG1197 807 FYVHNRVESIEKKAERLRELVPE-------------------------------------ARIAVAHGQMRERELEEVML 849 (1139)
T ss_pred EEEecchhhHHHHHHHHHHhCCc-------------------------------------eEEEEeecCCCHHHHHHHHH
Confidence 88889999999999998774211 23999999999999999999
Q ss_pred HhcCCCeeEEEecccccccCCCCCceE-EEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecC
Q 039491 769 LFCRGVVKVLFSTETFAMGVNAPARTV-VFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRD 840 (1379)
Q Consensus 769 lF~~G~ikVLVATetla~GINiPa~tv-VI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~ 840 (1379)
.|-+|..+|||||.+.+.|||+|+.+. ||+..-+|+ .++..|..||+||... .|+||+++.+
T Consensus 850 ~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fG--------LsQLyQLRGRVGRS~~--~AYAYfl~p~ 912 (1139)
T COG1197 850 DFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFG--------LAQLYQLRGRVGRSNK--QAYAYFLYPP 912 (1139)
T ss_pred HHHcCCCCEEEEeeeeecCcCCCCCceEEEecccccc--------HHHHHHhccccCCccc--eEEEEEeecC
Confidence 999999999999999999999998866 455444444 4789999999999885 5999999975
No 90
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.93 E-value=1.2e-23 Score=233.55 Aligned_cols=308 Identities=22% Similarity=0.264 Sum_probs=225.8
Q ss_pred CCCCCCHHHHHHHHHH----HCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc---cE
Q 039491 397 FPFELDNFQKEAIYYL----ENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF---DV 469 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~L----~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f---~V 469 (1379)
|.=+|+++|+.|-..+ .+.++.+|.|-||||||-...-+|..+++.|.++.+.+|....+-+.+.++++.| ++
T Consensus 94 W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I 173 (441)
T COG4098 94 WKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDI 173 (441)
T ss_pred eccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCe
Confidence 5556999999887664 5678999999999999998878999999999999999999999999999999999 78
Q ss_pred EEEecCcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHH-HHcCccceEEEecccCCC
Q 039491 470 GLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVI-IMLPRHINIVLLSATVPN 548 (1379)
Q Consensus 470 glltGdv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii-~~Lp~~vqiIlLSATvpN 548 (1379)
.++.||..-.-.++++|+|+..|...- ..++++|+||||-.--.. ...+.... ......-.+|.||||.++
T Consensus 174 ~~Lyg~S~~~fr~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP~~~-d~~L~~Av~~ark~~g~~IylTATp~k 245 (441)
T COG4098 174 DLLYGDSDSYFRAPLVVATTHQLLRFK-------QAFDLLIIDEVDAFPFSD-DQSLQYAVKKARKKEGATIYLTATPTK 245 (441)
T ss_pred eeEecCCchhccccEEEEehHHHHHHH-------hhccEEEEeccccccccC-CHHHHHHHHHhhcccCceEEEecCChH
Confidence 999999887777999999999887643 457899999999643111 11122222 223445678999999877
Q ss_pred hHHHHHHHhhhcCCcEEEEcc----CCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCC
Q 039491 549 TVEFADWIGRTKQKKIRVTGT----TKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAG 624 (1379)
Q Consensus 549 ~~efa~wl~~~~~~~i~vi~t----~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 624 (1379)
..+ ........+.+.- ..+|.|+-.++|..+ |.+.... .
T Consensus 246 ~l~-----r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~---------------~~k~l~r---~-------------- 288 (441)
T COG4098 246 KLE-----RKILKGNLRILKLPARFHGKPLPVPKFVWIGN---------------WNKKLQR---N-------------- 288 (441)
T ss_pred HHH-----HHhhhCCeeEeecchhhcCCCCCCCceEEecc---------------HHHHhhh---c--------------
Confidence 432 3333334433322 345777767776543 1111100 0
Q ss_pred CCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHh--CCCCCEEEEeCChhHHHHHH
Q 039491 625 ASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSK--KSLLPVVIFCFSKNHCDKLA 702 (1379)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~--~~~~pvIVFv~Srk~ce~lA 702 (1379)
+ ... .|++.+.+ +.+.|++||+++....+.+|
T Consensus 289 -------------------------k------------------l~~---kl~~~lekq~~~~~P~liF~p~I~~~eq~a 322 (441)
T COG4098 289 -------------------------K------------------LPL---KLKRWLEKQRKTGRPVLIFFPEIETMEQVA 322 (441)
T ss_pred -------------------------c------------------CCH---HHHHHHHHHHhcCCcEEEEecchHHHHHHH
Confidence 0 111 33444433 34589999999999999999
Q ss_pred HHhhc-CCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEec
Q 039491 703 DGMSG-IDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFST 781 (1379)
Q Consensus 703 ~~L~~-~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVAT 781 (1379)
..|.. .... .|+..|+. ...|....+.|++|.+++||+|
T Consensus 323 ~~lk~~~~~~--------------------------------------~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTT 362 (441)
T COG4098 323 AALKKKLPKE--------------------------------------TIASVHSE--DQHRKEKVEAFRDGKITLLITT 362 (441)
T ss_pred HHHHhhCCcc--------------------------------------ceeeeecc--CccHHHHHHHHHcCceEEEEEe
Confidence 99954 2211 25556664 3456677788999999999999
Q ss_pred ccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCC
Q 039491 782 ETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 782 etla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~ 841 (1379)
.++++|+.+|.+.|.+-+ .+.|..+.+..+|++||+||.-....|.++++-...
T Consensus 363 TILERGVTfp~vdV~Vlg------aeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~ 416 (441)
T COG4098 363 TILERGVTFPNVDVFVLG------AEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGK 416 (441)
T ss_pred ehhhcccccccceEEEec------CCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccc
Confidence 999999999999997652 244567899999999999998777789998887643
No 91
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.92 E-value=5.1e-24 Score=268.93 Aligned_cols=387 Identities=17% Similarity=0.210 Sum_probs=271.9
Q ss_pred CHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHH-hcCCcEEEecchHHHHHHHHHHHhccc--c----EEE-Ee
Q 039491 402 DNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALAT-KHCTRAVYTAPIKTISNQKYRDFSGKF--D----VGL-LT 473 (1379)
Q Consensus 402 ~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l-~~~~raIylsPtkaLsnQk~~~~~~~f--~----Vgl-lt 473 (1379)
+....+.+..+.++..++|+|+||||||+---..++..- ..+++++++-|.|--|....+++.+.+ + ||. +-
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iR 131 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIR 131 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEE
Confidence 466677788889999999999999999985333333332 456789999999988888888888776 3 444 34
Q ss_pred cCcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHH-------HcCccceEEEecccC
Q 039491 474 GDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVII-------MLPRHINIVLLSATV 546 (1379)
Q Consensus 474 Gdv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~-------~Lp~~vqiIlLSATv 546 (1379)
.+....++..|-+||.++|..++.... .++.+++|||||+| +|.....-++. ..++..++|.||||+
T Consensus 132 fe~~~s~~Trik~mTdGiLlrei~~D~-~Ls~ys~vIiDEaH-----ERSl~tDilLgllk~~~~~rr~DLKiIimSATl 205 (845)
T COG1643 132 FESKVSPRTRIKVMTDGILLREIQNDP-LLSGYSVVIIDEAH-----ERSLNTDILLGLLKDLLARRRDDLKLIIMSATL 205 (845)
T ss_pred eeccCCCCceeEEeccHHHHHHHhhCc-ccccCCEEEEcchh-----hhhHHHHHHHHHHHHHHhhcCCCceEEEEeccc
Confidence 466677889999999999999997764 48999999999999 56655554443 345579999999998
Q ss_pred CChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCC
Q 039491 547 PNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGAS 626 (1379)
Q Consensus 547 pN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 626 (1379)
|...|+.+++. .-++..+.|..|++.++..... . ++
T Consensus 206 -d~~rfs~~f~~-----apvi~i~GR~fPVei~Y~~~~~------~------d~-------------------------- 241 (845)
T COG1643 206 -DAERFSAYFGN-----APVIEIEGRTYPVEIRYLPEAE------A------DY-------------------------- 241 (845)
T ss_pred -CHHHHHHHcCC-----CCEEEecCCccceEEEecCCCC------c------ch--------------------------
Confidence 67779988873 4456666777777655422110 0 00
Q ss_pred CCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhh
Q 039491 627 SPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMS 706 (1379)
Q Consensus 627 ~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~ 706 (1379)
.....+...+........+.++||.+...+.+.+++.|.
T Consensus 242 -----------------------------------------~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~ 280 (845)
T COG1643 242 -----------------------------------------ILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLE 280 (845)
T ss_pred -----------------------------------------hHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHH
Confidence 012234445555555667899999999999999999997
Q ss_pred cCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccc
Q 039491 707 GIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAM 786 (1379)
Q Consensus 707 ~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~ 786 (1379)
+..+... --|..+||.|++.++..|++--..|.-||++||++++.
T Consensus 281 ~~~l~~~-----------------------------------~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAET 325 (845)
T COG1643 281 KAELGDD-----------------------------------LEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAET 325 (845)
T ss_pred hccccCC-----------------------------------cEEeeccccCCHHHHHhhcCCCCCCcceEEEEcccccc
Confidence 6222110 11667999999999999999888898899999999999
Q ss_pred cCCCCCceEEEcc----ccccCCc------ccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHH-HhcC
Q 039491 787 GVNAPARTVVFDN----LRKFDGR------EFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHI-IVGS 855 (1379)
Q Consensus 787 GINiPa~tvVI~~----~~kfDg~------~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~l-i~g~ 855 (1379)
+|.||++.+||++ ...|+.. ...++|..+..||+|||||.+- |+||-+++.+ .+..+ -...
T Consensus 326 SLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~p---GicyRLyse~-----~~~~~~~~t~ 397 (845)
T COG1643 326 SLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGP---GICYRLYSEE-----DFLAFPEFTL 397 (845)
T ss_pred ceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCC---ceEEEecCHH-----HHHhcccCCC
Confidence 9999999999974 3456654 2346789999999999999984 9999998653 22233 2344
Q ss_pred CCcccccccccHHHHHHHHhhccccHHHHHhhChhhHHhcCCcHHHHHHHHHHHcCCCCcccccCCcchHHHHHHHHHHH
Q 039491 856 ATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTIECIKGEPAIEEYYDMYYEA 935 (1379)
Q Consensus 856 ~~~L~S~f~lty~miLnLlr~e~~~~e~~l~~SF~e~~~~~~~~~~~~~l~~~l~~~~~~i~c~~~~~~~~~~~~~~~~~ 935 (1379)
|+-+.+.+. +.+|.+..++-- .+.....|.+- .....+...+ +.|..+.|++..+.++...+.+..+
T Consensus 398 PEIlrtdLs---~~vL~l~~~G~~--~d~~~f~fld~---P~~~~i~~A~-----~~L~~LGAld~~g~LT~lG~~ms~l 464 (845)
T COG1643 398 PEILRTDLS---GLVLQLKSLGIG--QDIAPFPFLDP---PPEAAIQAAL-----TLLQELGALDDSGKLTPLGKQMSLL 464 (845)
T ss_pred hhhhhcchH---HHHHHHHhcCCC--CCcccCccCCC---CChHHHHHHH-----HHHHHcCCcCCCCCCCHHHHHHHhC
Confidence 555555544 577777655431 12333344433 3333333333 2334666777777777766554443
No 92
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.92 E-value=5.9e-24 Score=263.84 Aligned_cols=350 Identities=17% Similarity=0.136 Sum_probs=223.5
Q ss_pred hccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-----c
Q 039491 394 ALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-----D 468 (1379)
Q Consensus 394 a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-----~ 468 (1379)
.+.++..|++.|..+...+.+|+ ++.++||+|||++|.+|++...-.|..+.+++|+..||.|.++.+...+ +
T Consensus 50 ~R~lg~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLs 127 (745)
T TIGR00963 50 KRVLGMRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLS 127 (745)
T ss_pred HHHhCCCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCe
Confidence 45678888899999998888876 9999999999999999996555567789999999999999999988876 7
Q ss_pred EEEEecCcccC-----CCCceeeecHHHH-HHHHhcC------cccCCCccEEEEeccCCCC-CccchhHH---------
Q 039491 469 VGLLTGDVSLR-----PEASCLIMTTEIL-RSMLYRG------ADIIRDIEWVIFDEVHYVN-DIERGVVW--------- 526 (1379)
Q Consensus 469 VglltGdv~in-----~~a~IlV~TpEiL-~smL~~~------~~~l~~v~lVI~DEaH~l~-d~~rG~v~--------- 526 (1379)
|++++|+.+.. -.++|+|+||..| .++|..+ ...++.+.++|+||||.+. |..|.+.+
T Consensus 128 v~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~ 207 (745)
T TIGR00963 128 VGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKST 207 (745)
T ss_pred EEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCch
Confidence 89999987632 2479999999988 7777654 2467899999999999875 33332211
Q ss_pred ------HHHHHHcCc--------cceEEEeccc----------CCCh-----HHHHHHHhhh-------cCC--------
Q 039491 527 ------EEVIIMLPR--------HINIVLLSAT----------VPNT-----VEFADWIGRT-------KQK-------- 562 (1379)
Q Consensus 527 ------eeii~~Lp~--------~vqiIlLSAT----------vpN~-----~efa~wl~~~-------~~~-------- 562 (1379)
..+...|.. .-+.+.|+.- ++|. .++..|+... +.+
T Consensus 208 ~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~ 287 (745)
T TIGR00963 208 ELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDG 287 (745)
T ss_pred HHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECC
Confidence 111222221 1223334321 1111 1233344321 111
Q ss_pred cEEEEcc-CCCC-------------------c------------------CceEEEeecCceeeeccCcccchhhHHHHH
Q 039491 563 KIRVTGT-TKRP-------------------V------------------PLEHCLYYSGEFYKVCENEAFIPQGWKAAK 604 (1379)
Q Consensus 563 ~i~vi~t-~~Rp-------------------v------------------pLe~~l~~~~~l~~i~d~~~f~~~~~~~~~ 604 (1379)
.+.++.. ..|. + -+-..++--.+--.. .. ..+..
T Consensus 288 ~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~t-e~-----~E~~~-- 359 (745)
T TIGR00963 288 EVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKT-EE-----EEFEK-- 359 (745)
T ss_pred EEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHH-HH-----HHHHH--
Confidence 1111111 0110 0 011122211100000 00 00000
Q ss_pred HHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHH--Hh
Q 039491 605 DAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKL--SK 682 (1379)
Q Consensus 605 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L--~~ 682 (1379)
.+ +.+... .+......+ + -.+ ...-.....+|..+++.+ ..
T Consensus 360 -iY----~l~vv~----IPtnkp~~R-------------------~------d~~---d~i~~t~~~k~~ai~~~i~~~~ 402 (745)
T TIGR00963 360 -IY----NLEVVV----VPTNRPVIR-------------------K------DLS---DLVYKTEEEKWKAVVDEIKERH 402 (745)
T ss_pred -Hh----CCCEEE----eCCCCCeee-------------------e------eCC---CeEEcCHHHHHHHHHHHHHHHH
Confidence 00 000000 000000000 0 000 000112345666776665 23
Q ss_pred CCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHH
Q 039491 683 KSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIV 762 (1379)
Q Consensus 683 ~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~ 762 (1379)
..+.|+||||.|+..++.++..|.+.++.. .++||+ +..
T Consensus 403 ~~grpvLV~t~si~~se~ls~~L~~~gi~~---------------------------------------~~Lna~--q~~ 441 (745)
T TIGR00963 403 AKGQPVLVGTTSVEKSELLSNLLKERGIPH---------------------------------------NVLNAK--NHE 441 (745)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHcCCCe---------------------------------------EEeeCC--hHH
Confidence 457899999999999999999998876653 358998 889
Q ss_pred HHHHHHHhcCCCeeEEEecccccccCCCCC-------ceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEE
Q 039491 763 KEVIEMLFCRGVVKVLFSTETFAMGVNAPA-------RTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVV 835 (1379)
Q Consensus 763 Re~Ve~lF~~G~ikVLVATetla~GINiPa-------~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vI 835 (1379)
|+..+..|+.+...|+|||++++||+|++. ..+||+ ++. |.+...|.|++|||||.|.. |.++
T Consensus 442 rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~----t~~----p~s~ri~~q~~GRtGRqG~~--G~s~ 511 (745)
T TIGR00963 442 REAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIG----TER----HESRRIDNQLRGRSGRQGDP--GSSR 511 (745)
T ss_pred HHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEe----cCC----CCcHHHHHHHhccccCCCCC--cceE
Confidence 999999999999999999999999999998 458888 666 89999999999999999975 8888
Q ss_pred EEecCC
Q 039491 836 VLCRDE 841 (1379)
Q Consensus 836 il~~~~ 841 (1379)
++++.+
T Consensus 512 ~~ls~e 517 (745)
T TIGR00963 512 FFLSLE 517 (745)
T ss_pred EEEecc
Confidence 887654
No 93
>PRK09694 helicase Cas3; Provisional
Probab=99.92 E-value=2.6e-23 Score=266.33 Aligned_cols=324 Identities=16% Similarity=0.113 Sum_probs=197.8
Q ss_pred CCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcC--CcEEEecchHHHHHHHHHHHhc----cc---c
Q 039491 398 PFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHC--TRAVYTAPIKTISNQKYRDFSG----KF---D 468 (1379)
Q Consensus 398 pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~--~raIylsPtkaLsnQk~~~~~~----~f---~ 468 (1379)
+|+|+|+|+.+......+..+++.||||+|||.+|++++...+..+ .+++|..||++++||.|.++++ .| +
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPN 363 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5789999998865444566899999999999999988776655443 7899999999999999999875 34 5
Q ss_pred EEEEecCcccCC----------------------------------CCceeeecHHHHHH-HHhcCcccCCCcc----EE
Q 039491 469 VGLLTGDVSLRP----------------------------------EASCLIMTTEILRS-MLYRGADIIRDIE----WV 509 (1379)
Q Consensus 469 VglltGdv~in~----------------------------------~a~IlV~TpEiL~s-mL~~~~~~l~~v~----lV 509 (1379)
+++.+|....+. -++++|+|+..+.. .+......++.++ +|
T Consensus 364 v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svv 443 (878)
T PRK09694 364 LILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVL 443 (878)
T ss_pred eEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeE
Confidence 888887654211 15899999976653 3332333444444 89
Q ss_pred EEeccCCCCCccchhHHHHHHHHc-CccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceee
Q 039491 510 IFDEVHYVNDIERGVVWEEVIIML-PRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYK 588 (1379)
Q Consensus 510 I~DEaH~l~d~~rG~v~eeii~~L-p~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~ 588 (1379)
||||||-+. ......++.++..+ ....++|+||||+|.... ..++...... ..+.. ..+.|+-....... .
T Consensus 444 IiDEVHAyD-~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r-~~L~~a~~~~-~~~~~--~~~YPlvt~~~~~~-~-- 515 (878)
T PRK09694 444 IVDEVHAYD-AYMYGLLEAVLKAQAQAGGSVILLSATLPATLK-QKLLDTYGGH-DPVEL--SSAYPLITWRGVNG-A-- 515 (878)
T ss_pred EEechhhCC-HHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHH-HHHHHHhccc-ccccc--cccccccccccccc-c--
Confidence 999999873 33344556666554 346889999999987542 1222211110 00000 00111100000000 0
Q ss_pred eccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccc
Q 039491 589 VCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRS 668 (1379)
Q Consensus 589 i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1379)
..+. ... ..... ..+..... . ... . .....
T Consensus 516 ----~~~~------------------~~~----~~~~~---~~~~~v~v------------~----~~~--~---~~~~~ 545 (878)
T PRK09694 516 ----QRFD------------------LSA----HPEQL---PARFTIQL------------E----PIC--L---ADMLP 545 (878)
T ss_pred ----eeee------------------ccc----ccccc---CcceEEEE------------E----eec--c---ccccC
Confidence 0000 000 00000 00000000 0 000 0 00000
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhc
Q 039491 669 EVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLR 748 (1379)
Q Consensus 669 ~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~ 748 (1379)
....+..+++.+. .+.+++|||||++.|+++++.|.+.....
T Consensus 546 ~~~~l~~i~~~~~--~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~------------------------------------ 587 (878)
T PRK09694 546 DLTLLQRMIAAAN--AGAQVCLICNLVDDAQKLYQRLKELNNTQ------------------------------------ 587 (878)
T ss_pred HHHHHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHhhCCCC------------------------------------
Confidence 1223333444333 35789999999999999999997532110
Q ss_pred cceEEecCCCChHHHH----HHHHHh-cCCC---eeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHh
Q 039491 749 RGIAIHHAGLLPIVKE----VIEMLF-CRGV---VKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMA 820 (1379)
Q Consensus 749 rGIavhHggL~~~~Re----~Ve~lF-~~G~---ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQma 820 (1379)
..+.++||.+.+.+|+ .+++.| ++|. .+|||||+++++|||++ .+++|. ... | ...|+||+
T Consensus 588 ~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlIt----dla----P--idsLiQRa 656 (878)
T PRK09694 588 VDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLIT----QLC----P--VDLLFQRL 656 (878)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEE----CCC----C--HHHHHHHH
Confidence 1277899999999995 456677 6665 47999999999999996 578887 222 3 56899999
Q ss_pred cccCCCCC
Q 039491 821 GRAGRRGL 828 (1379)
Q Consensus 821 GRAGRrG~ 828 (1379)
||+||.+.
T Consensus 657 GR~~R~~~ 664 (878)
T PRK09694 657 GRLHRHHR 664 (878)
T ss_pred hccCCCCC
Confidence 99999886
No 94
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.92 E-value=6.7e-24 Score=235.80 Aligned_cols=301 Identities=21% Similarity=0.276 Sum_probs=221.5
Q ss_pred CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEEEecCcc--
Q 039491 401 LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVS-- 477 (1379)
Q Consensus 401 L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~-- 477 (1379)
++|.|..+|.....|+++|+..|||.||++||.+|.+.+ ..-+++++|...|...+.-.++... +...+....+
T Consensus 95 frplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a---dg~alvi~plislmedqil~lkqlgi~as~lnansske 171 (695)
T KOG0353|consen 95 FRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA---DGFALVICPLISLMEDQILQLKQLGIDASMLNANSSKE 171 (695)
T ss_pred cChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc---CCceEeechhHHHHHHHHHHHHHhCcchhhccCcccHH
Confidence 799999999999999999999999999999999987654 5679999999999999998998876 5444444333
Q ss_pred -----------cCCCCceeeecHHHHHH---HHhc--CcccCCCccEEEEeccCCCCCccch--hHHH--HHHHHcCccc
Q 039491 478 -----------LRPEASCLIMTTEILRS---MLYR--GADIIRDIEWVIFDEVHYVNDIERG--VVWE--EVIIMLPRHI 537 (1379)
Q Consensus 478 -----------in~~a~IlV~TpEiL~s---mL~~--~~~~l~~v~lVI~DEaH~l~d~~rG--~v~e--eii~~Lp~~v 537 (1379)
.+.+..++..|||.+.. |+.+ .+...+.+.++-+||+|+...|+.. +.+. .++..--+.+
T Consensus 172 ~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~ 251 (695)
T KOG0353|consen 172 EAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGA 251 (695)
T ss_pred HHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCC
Confidence 23345789999998742 1211 2344567889999999999977532 2232 2333334678
Q ss_pred eEEEecccCCChH--HHHHHHhhhcCCcEEEEcc-CCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhcccc
Q 039491 538 NIVLLSATVPNTV--EFADWIGRTKQKKIRVTGT-TKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSA 614 (1379)
Q Consensus 538 qiIlLSATvpN~~--efa~wl~~~~~~~i~vi~t-~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~ 614 (1379)
.+|+|+||-.|.. +..+.++.. .+..+.. -.|| .|. |.+..
T Consensus 252 ~iigltatatn~vl~d~k~il~ie---~~~tf~a~fnr~-nl~---------yev~q----------------------- 295 (695)
T KOG0353|consen 252 PIIGLTATATNHVLDDAKDILCIE---AAFTFRAGFNRP-NLK---------YEVRQ----------------------- 295 (695)
T ss_pred ceeeeehhhhcchhhHHHHHHhHH---hhheeecccCCC-Cce---------eEeee-----------------------
Confidence 9999999977654 333444321 1111111 1222 111 01100
Q ss_pred ccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhC-CCCCEEEEeC
Q 039491 615 ASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKK-SLLPVVIFCF 693 (1379)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~-~~~pvIVFv~ 693 (1379)
.+.+....+..+++.++.. .+...||||+
T Consensus 296 --------------------------------------------------kp~n~dd~~edi~k~i~~~f~gqsgiiyc~ 325 (695)
T KOG0353|consen 296 --------------------------------------------------KPGNEDDCIEDIAKLIKGDFAGQSGIIYCF 325 (695)
T ss_pred --------------------------------------------------CCCChHHHHHHHHHHhccccCCCcceEEEe
Confidence 0011334445555555432 3467899999
Q ss_pred ChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCC
Q 039491 694 SKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRG 773 (1379)
Q Consensus 694 Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G 773 (1379)
|++.|+.++..|.+.|+... .+|+.|.|.+|.-+-+.+..|
T Consensus 326 sq~d~ekva~alkn~gi~a~---------------------------------------~yha~lep~dks~~hq~w~a~ 366 (695)
T KOG0353|consen 326 SQKDCEKVAKALKNHGIHAG---------------------------------------AYHANLEPEDKSGAHQGWIAG 366 (695)
T ss_pred ccccHHHHHHHHHhcCcccc---------------------------------------ccccccCcccccccccccccc
Confidence 99999999999999888764 389999999999999999999
Q ss_pred CeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHH-----------------------------------
Q 039491 774 VVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQ----------------------------------- 818 (1379)
Q Consensus 774 ~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQ----------------------------------- 818 (1379)
.|.|+|||-.|.||||-|+++.||+ +.. |.+...|.|
T Consensus 367 eiqvivatvafgmgidkpdvrfvih----hsl----~ksienyyqasarillrmtkqknksdtggstqinilevctnfki 438 (695)
T KOG0353|consen 367 EIQVIVATVAFGMGIDKPDVRFVIH----HSL----PKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKI 438 (695)
T ss_pred ceEEEEEEeeecccCCCCCeeEEEe----ccc----chhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhcccee
Confidence 9999999999999999999999999 777 889999999
Q ss_pred --------HhcccCCCCCCCcEEEEEEec
Q 039491 819 --------MAGRAGRRGLDKIGTVVVLCR 839 (1379)
Q Consensus 819 --------maGRAGRrG~d~~G~vIil~~ 839 (1379)
..|||||.|.. ..||+++.
T Consensus 439 ffavfsekesgragrd~~~--a~cilyy~ 465 (695)
T KOG0353|consen 439 FFAVFSEKESGRAGRDDMK--ADCILYYG 465 (695)
T ss_pred eeeeecchhccccccCCCc--ccEEEEec
Confidence 78999999875 78888774
No 95
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=2.6e-24 Score=266.52 Aligned_cols=353 Identities=25% Similarity=0.423 Sum_probs=274.3
Q ss_pred CCHHHHHHHHHH-HCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc------cEEEEe
Q 039491 401 LDNFQKEAIYYL-ENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF------DVGLLT 473 (1379)
Q Consensus 401 L~~~Q~eAI~~L-~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f------~Vgllt 473 (1379)
..++|.+.++.+ +.+++|||+||+|||||+||++|++. -....+++|+.|.-+.+...+++|.+.| .+..+|
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ 1222 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLT 1222 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecC
Confidence 389999999987 77899999999999999999999988 3345789999999999999999999988 456678
Q ss_pred cCcccCC----CCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHH------HHcCccceEEEec
Q 039491 474 GDVSLRP----EASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVI------IMLPRHINIVLLS 543 (1379)
Q Consensus 474 Gdv~in~----~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii------~~Lp~~vqiIlLS 543 (1379)
|+.+.+- ..+++|+||+.+... . .+..+++.|.||.|.+++ ..|.+++-++ ..+-+++++++||
T Consensus 1223 ge~s~~lkl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg-~~g~v~evi~S~r~ia~q~~k~ir~v~ls 1296 (1674)
T KOG0951|consen 1223 GETSLDLKLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGG-VYGAVYEVICSMRYIASQLEKKIRVVALS 1296 (1674)
T ss_pred CccccchHHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcc-cCCceEEEEeeHHHHHHHHHhheeEEEee
Confidence 8887653 579999999999765 1 678999999999999995 4577765544 3466899999999
Q ss_pred ccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCC
Q 039491 544 ATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYA 623 (1379)
Q Consensus 544 ATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 623 (1379)
-.+.|+.++ ++.. ...++.+....||+|++..+...+ +. .+...+.++
T Consensus 1297 ~~lana~d~---ig~s-~~~v~Nf~p~~R~~Pl~i~i~~~~----~~--------~~~~~~~am---------------- 1344 (1674)
T KOG0951|consen 1297 SSLANARDL---IGAS-SSGVFNFSPSVRPVPLEIHIQSVD----IS--------HFESRMLAM---------------- 1344 (1674)
T ss_pred hhhccchhh---cccc-ccceeecCcccCCCceeEEEEEec----cc--------hhHHHHHHh----------------
Confidence 999999987 6654 346788889999999987764322 11 111111000
Q ss_pred CCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHH
Q 039491 624 GASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLAD 703 (1379)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~ 703 (1379)
.+.....+.++.. +..|++||+++++.|..+|.
T Consensus 1345 ---------------------------------------------~~~~~~ai~~~a~--~~k~~~vf~p~rk~~~~~a~ 1377 (1674)
T KOG0951|consen 1345 ---------------------------------------------TKPTYTAIVRHAG--NRKPAIVFLPTRKHARLVAV 1377 (1674)
T ss_pred ---------------------------------------------hhhHHHHHHHHhc--CCCCeEEEeccchhhhhhhh
Confidence 1223344444443 45799999999999999999
Q ss_pred HhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEeccc
Q 039491 704 GMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTET 783 (1379)
Q Consensus 704 ~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATet 783 (1379)
.|-........ ..+ ++.+.+ ....+++.|++||+ |-||++...++|-.+|..|.|.|+|...-
T Consensus 1378 ~~~~~s~~~~~--~~l-------~~~~e~------~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~ 1440 (1674)
T KOG0951|consen 1378 DLVTFSHADEP--DYL-------LSELEE------CDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD 1440 (1674)
T ss_pred ccchhhccCcH--HHH-------HHHHhc------chHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc
Confidence 88654333311 111 111111 22457788999999 99999999999999999999999999988
Q ss_pred ccccCCCCCceEEEccccccCCcc--cccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHHhcCCCcccc
Q 039491 784 FAMGVNAPARTVVFDNLRKFDGRE--FRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLES 861 (1379)
Q Consensus 784 la~GINiPa~tvVI~~~~kfDg~~--~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li~g~~~~L~S 861 (1379)
.+|+-+.+--||+.++..|||++ +.+.+..+..||.|+|.|. |.||++|... ....+++++. ++.|.+|
T Consensus 1441 -~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~-----~k~vi~~~~~--~k~yykkfl~-e~lPves 1511 (1674)
T KOG0951|consen 1441 -CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA-----GKCVIMCHTP--KKEYYKKFLY-EPLPVES 1511 (1674)
T ss_pred -cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcCC-----ccEEEEecCc--hHHHHHHhcc-CcCchHH
Confidence 99999999999999999999974 5567899999999999994 6889999765 5677777776 7888998
Q ss_pred cccc
Q 039491 862 QFRL 865 (1379)
Q Consensus 862 ~f~l 865 (1379)
++..
T Consensus 1512 ~lq~ 1515 (1674)
T KOG0951|consen 1512 HLQH 1515 (1674)
T ss_pred HHHH
Confidence 7653
No 96
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.91 E-value=1.7e-23 Score=250.69 Aligned_cols=381 Identities=16% Similarity=0.246 Sum_probs=262.0
Q ss_pred CHHHHHHHHHHHCCCcEEEEcCCCccHHHH-HHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc------cEEEEec
Q 039491 402 DNFQKEAIYYLENGDSVFVAAHTSAGKTVV-AEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF------DVGLLTG 474 (1379)
Q Consensus 402 ~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlv-ae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f------~VglltG 474 (1379)
..+-.+.++.+++++.++|.++||||||.- -.|....-.....++.+|.|.|--+.-.++++.+.. .||....
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IR 132 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIR 132 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEE
Confidence 466778899999999999999999999972 111111122344559999999998888888887765 4554322
Q ss_pred -CcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc------CccceEEEecccCC
Q 039491 475 -DVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML------PRHINIVLLSATVP 547 (1379)
Q Consensus 475 -dv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L------p~~vqiIlLSATvp 547 (1379)
+....+...|.+||-++|.+-+... ..++++++||+|||| +|.....-++-.| ++..++|.+|||+
T Consensus 133 Fed~ts~~TrikymTDG~LLRE~l~D-p~LskYsvIIlDEAH-----ERsl~TDiLlGlLKki~~~R~~LklIimSATl- 205 (674)
T KOG0922|consen 133 FEDSTSKDTRIKYMTDGMLLREILKD-PLLSKYSVIILDEAH-----ERSLHTDILLGLLKKILKKRPDLKLIIMSATL- 205 (674)
T ss_pred ecccCCCceeEEEecchHHHHHHhcC-CccccccEEEEechh-----hhhhHHHHHHHHHHHHHhcCCCceEEEEeeee-
Confidence 3334557899999999997766544 468999999999999 6766666555444 3568999999998
Q ss_pred ChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCC
Q 039491 548 NTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASS 627 (1379)
Q Consensus 548 N~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 627 (1379)
|+..|.++++. +.++.-+.|.-|++.++.... ..+|
T Consensus 206 da~kfS~yF~~-----a~i~~i~GR~fPVei~y~~~p------------~~dY--------------------------- 241 (674)
T KOG0922|consen 206 DAEKFSEYFNN-----APILTIPGRTFPVEILYLKEP------------TADY--------------------------- 241 (674)
T ss_pred cHHHHHHHhcC-----CceEeecCCCCceeEEeccCC------------chhh---------------------------
Confidence 68889998873 445556677777765543211 0000
Q ss_pred CcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhc
Q 039491 628 PRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSG 707 (1379)
Q Consensus 628 ~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~ 707 (1379)
....+..+++.....+.+-++||.....+.+.+++.|.+
T Consensus 242 -----------------------------------------v~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e 280 (674)
T KOG0922|consen 242 -----------------------------------------VDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRE 280 (674)
T ss_pred -----------------------------------------HHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHH
Confidence 122334444444455667899999999999999998866
Q ss_pred CCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEeccccccc
Q 039491 708 IDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMG 787 (1379)
Q Consensus 708 ~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~G 787 (1379)
..-... +. .|. -|...||.|+++++..|+.--..|.-||++||++++..
T Consensus 281 ~~~~~~------------------~~---~~~----------~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETS 329 (674)
T KOG0922|consen 281 RAKSLP------------------ED---CPE----------LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETS 329 (674)
T ss_pred Hhhhcc------------------cc---Ccc----------eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeee
Confidence 311111 10 000 15569999999999999999999999999999999999
Q ss_pred CCCCCceEEEcc----ccccCCc------ccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHHhcCCC
Q 039491 788 VNAPARTVVFDN----LRKFDGR------EFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSAT 857 (1379)
Q Consensus 788 INiPa~tvVI~~----~~kfDg~------~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li~g~~~ 857 (1379)
|.||++.+||++ .++|++. ...|+|..+-.||+|||||.|. |.|+-+++. ..+.+|.....+
T Consensus 330 lTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~p---GkcyRLYte-----~~~~~~~~~~~P 401 (674)
T KOG0922|consen 330 LTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGP---GKCYRLYTE-----SAYDKMPLQTVP 401 (674)
T ss_pred EEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCC---ceEEEeeeH-----HHHhhcccCCCC
Confidence 999999999874 3556664 2446799999999999999984 999999864 345666554443
Q ss_pred ccc-ccccccHHHHHHHHhhccccHHHHHhhChhhHHhcCCcHHHHHHHHHHHcCCCCcccccCCcchHHH
Q 039491 858 RLE-SQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTIECIKGEPAIEE 927 (1379)
Q Consensus 858 ~L~-S~f~lty~miLnLlr~e~~~~e~~l~~SF~e~~~~~~~~~~~~~l~~~l~~~~~~i~c~~~~~~~~~ 927 (1379)
.+. +.+. .++|.|. .+.+.+.+...|.+.... ..+..++ + +|..+.|++..+.++.
T Consensus 402 EI~R~~Ls---~~vL~Lk---algi~d~l~F~f~d~P~~---~~l~~AL-~----~L~~lgald~~g~lt~ 458 (674)
T KOG0922|consen 402 EIQRVNLS---SAVLQLK---ALGINDPLRFPFIDPPPP---EALEEAL-E----ELYSLGALDDRGKLTS 458 (674)
T ss_pred ceeeechH---HHHHHHH---hcCCCCcccCCCCCCCCh---HHHHHHH-H----HHHhcCcccCcCCcCc
Confidence 332 2222 4555554 344456666666553322 2233333 2 2345556666666665
No 97
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.91 E-value=2.9e-23 Score=267.30 Aligned_cols=397 Identities=16% Similarity=0.100 Sum_probs=225.9
Q ss_pred CCCCHHHHHHHHHHHC--CCcEEEEcCCCccHHHHHHHHHHHHHhcC--CcEEEecchHHHHHHHHHHHhccc--cEEEE
Q 039491 399 FELDNFQKEAIYYLEN--GDSVFVAAHTSAGKTVVAEYAFALATKHC--TRAVYTAPIKTISNQKYRDFSGKF--DVGLL 472 (1379)
Q Consensus 399 FeL~~~Q~eAI~~L~~--g~sVlV~ApTGSGKTlvae~aI~~~l~~~--~raIylsPtkaLsnQk~~~~~~~f--~Vgll 472 (1379)
..|.|||..++..+.. ...++++..+|.|||+-|.+.+...+..+ .+++|+||. .|..||..++.++| .+.++
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i~ 229 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSLF 229 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEEE
Confidence 4588999999887644 34799999999999998876666655444 689999997 89999999999888 66666
Q ss_pred ecCccc-------C--CCCceeeecHHHHHHHH-hcCcccCCCccEEEEeccCCCCCcc--chhHHHHHHHHc-CccceE
Q 039491 473 TGDVSL-------R--PEASCLIMTTEILRSML-YRGADIIRDIEWVIFDEVHYVNDIE--RGVVWEEVIIML-PRHINI 539 (1379)
Q Consensus 473 tGdv~i-------n--~~a~IlV~TpEiL~smL-~~~~~~l~~v~lVI~DEaH~l~d~~--rG~v~eeii~~L-p~~vqi 539 (1379)
.++... + ...+++|+|.+.+...- +.....-.++++||+||||++.... ....+. .+..+ .....+
T Consensus 230 ~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~-~v~~La~~~~~~ 308 (956)
T PRK04914 230 DEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQ-VVEQLAEVIPGV 308 (956)
T ss_pred cCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHH-HHHHHhhccCCE
Confidence 554311 2 24689999999886521 1111122478999999999996321 122233 33333 234578
Q ss_pred EEecccCC--ChHHHHHHHhhhcCCcEEEEcc------CCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhc
Q 039491 540 VLLSATVP--NTVEFADWIGRTKQKKIRVTGT------TKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKN 611 (1379)
Q Consensus 540 IlLSATvp--N~~efa~wl~~~~~~~i~vi~t------~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~ 611 (1379)
++||||+- +..++...+.........-... .++|+. .-+..+.+.+....... .....+....
T Consensus 309 LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a--------~~v~~l~~~~~~~~~~~-~~l~~ll~~~ 379 (956)
T PRK04914 309 LLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVA--------DAVQALLAGEKLSDDAL-NALGELLGEQ 379 (956)
T ss_pred EEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHH--------HHHHHHhcCCcCCHHHH-HHHHHHhccc
Confidence 99999965 3345555444332211000000 001100 00000000000000000 0000000000
Q ss_pred cccccCCCCCC-C-CCCC----------CcccccccccCCCCCCCCCCccccccccC----------------------C
Q 039491 612 LSAASGATGSY-A-GASS----------PRDGARAQKREHPNRGKQNKHSVVGIKNS----------------------G 657 (1379)
Q Consensus 612 ~~~~~~~~~~~-~-~~~~----------~~~~~~~~~~~~~~~gr~~~~~~~~~~~~----------------------~ 657 (1379)
........... . .... .+.+.+..-.+.++..-++...+..+... .
T Consensus 380 ~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l 459 (956)
T PRK04914 380 DIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDML 459 (956)
T ss_pred chhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhc
Confidence 00000000000 0 0000 00000000000000000000000000000 0
Q ss_pred CC----C--CCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhh-cCCCCCchhhhHHHHHHHHHhhhc
Q 039491 658 GS----Q--NNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMS-GIDLTSSSEKSEIRVFCDKAFSRL 730 (1379)
Q Consensus 658 ~~----~--~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~-~~~l~~~~ek~~i~~~~~~~~~~L 730 (1379)
.+ + ...+.+.....++..|+..+......++||||.++..|..+++.|+ ..|+.
T Consensus 460 ~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~------------------- 520 (956)
T PRK04914 460 YPEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIR------------------- 520 (956)
T ss_pred CHHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCee-------------------
Confidence 00 0 0000011123455567777777667899999999999999999994 33433
Q ss_pred cCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCC--CeeEEEecccccccCCCCCceEEEccccccCCccc
Q 039491 731 KGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRG--VVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREF 808 (1379)
Q Consensus 731 ~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G--~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~ 808 (1379)
+.++||+|++.+|+.+...|+++ ..+|||||+++++|+|++.+++||+ ||.
T Consensus 521 --------------------~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VIn----fDl--- 573 (956)
T PRK04914 521 --------------------AAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVL----FDL--- 573 (956)
T ss_pred --------------------EEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEE----ecC---
Confidence 45699999999999999999984 6999999999999999999999999 999
Q ss_pred ccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHHhc
Q 039491 809 RQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVG 854 (1379)
Q Consensus 809 rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li~g 854 (1379)
|.+|..|.||+||+||.|......+++++..+. ....+.+++..
T Consensus 574 -P~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t-~~e~i~~~~~~ 617 (956)
T PRK04914 574 -PFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGT-AQERLFRWYHE 617 (956)
T ss_pred -CCCHHHHHHHhcccccCCCCceEEEEEccCCCC-HHHHHHHHHhh
Confidence 999999999999999999875444455554443 34455555544
No 98
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=6e-23 Score=252.60 Aligned_cols=329 Identities=21% Similarity=0.199 Sum_probs=194.4
Q ss_pred EEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc--cEEEEecCccc-----------CCCCcee
Q 039491 419 FVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF--DVGLLTGDVSL-----------RPEASCL 485 (1379)
Q Consensus 419 lV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f--~VglltGdv~i-----------n~~a~Il 485 (1379)
++.|+||||||.+|..++..++..+.++||++|+++|+.|+++.|++.| ++.+++|+.+- +.+++|+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IV 80 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVV 80 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 4689999999999998898888899999999999999999999999988 79999987752 2467999
Q ss_pred eecHHHHHHHHhcCcccCCCccEEEEeccCCCCCcc-chhHH--HHHHHH--cCccceEEEecccCCChHHHHHHHhhhc
Q 039491 486 IMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIE-RGVVW--EEVIIM--LPRHINIVLLSATVPNTVEFADWIGRTK 560 (1379)
Q Consensus 486 V~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~-rG~v~--eeii~~--Lp~~vqiIlLSATvpN~~efa~wl~~~~ 560 (1379)
|+|+..+. ..+.++++|||||+|....++ .++.+ .++..+ ...++++|++||| |....+....
T Consensus 81 VGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SAT-Psles~~~~~---- 148 (505)
T TIGR00595 81 IGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSAT-PSLESYHNAK---- 148 (505)
T ss_pred ECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCC-CCHHHHHHHh----
Confidence 99997663 247899999999999876432 12221 222222 2356899999999 4444333221
Q ss_pred CCcEEEEccCCC----CcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccc
Q 039491 561 QKKIRVTGTTKR----PVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQK 636 (1379)
Q Consensus 561 ~~~i~vi~t~~R----pvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1379)
.+......-..| +.|..+. +|-....
T Consensus 149 ~g~~~~~~l~~r~~~~~~p~v~v----------id~~~~~---------------------------------------- 178 (505)
T TIGR00595 149 QKAYRLLVLTRRVSGRKPPEVKL----------IDMRKEP---------------------------------------- 178 (505)
T ss_pred cCCeEEeechhhhcCCCCCeEEE----------Eeccccc----------------------------------------
Confidence 222322222222 1121111 1100000
Q ss_pred cCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHH-----HHHHHHhh----c
Q 039491 637 REHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHC-----DKLADGMS----G 707 (1379)
Q Consensus 637 ~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~c-----e~lA~~L~----~ 707 (1379)
+ . + ......+..+-+.+.+ +.++|||++++..+ ...-..+. .
T Consensus 179 -------------~-----~-------~--~ls~~l~~~i~~~l~~--g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~ 229 (505)
T TIGR00595 179 -------------R-----Q-------S--FLSPELITAIEQTLAA--GEQSILFLNRRGYSKNLLCRSCGYILCCPNCD 229 (505)
T ss_pred -------------c-----c-------C--CccHHHHHHHHHHHHc--CCcEEEEEeCCcCCCeeEhhhCcCccCCCCCC
Confidence 0 0 0 0012223333334433 36999999988642 22111110 0
Q ss_pred CCCCCchhhhHH-----------HHHHHHHh-hhccCCCCCchhH-HHHHHhh-ccceEEecCCCChHHH--HHHHHHhc
Q 039491 708 IDLTSSSEKSEI-----------RVFCDKAF-SRLKGSDRNLPQI-VRVQSLL-RRGIAIHHAGLLPIVK--EVIEMLFC 771 (1379)
Q Consensus 708 ~~l~~~~ek~~i-----------~~~~~~~~-~~L~~edr~lpqi-~~l~~lL-~rGIavhHggL~~~~R--e~Ve~lF~ 771 (1379)
..++.......+ -..+-++- ..+.........+ ..+...+ ...|...|+++....+ +.++..|+
T Consensus 230 ~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~ 309 (505)
T TIGR00595 230 VSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFA 309 (505)
T ss_pred CceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHh
Confidence 000000000000 00000000 0000000001111 1222222 2368889999988776 89999999
Q ss_pred CCCeeEEEecccccccCCCCCceEE--EccccccCCccccc--CCHHHHHHHhcccCCCCCCCcEEEEEEecC
Q 039491 772 RGVVKVLFSTETFAMGVNAPARTVV--FDNLRKFDGREFRQ--LLPGEYTQMAGRAGRRGLDKIGTVVVLCRD 840 (1379)
Q Consensus 772 ~G~ikVLVATetla~GINiPa~tvV--I~~~~kfDg~~~rp--ls~~eyiQmaGRAGRrG~d~~G~vIil~~~ 840 (1379)
+|.++|||+|++++.|+|+|.+++| ++...-.....||. .....|+|++|||||.+.. |.|++.+..
T Consensus 310 ~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~--g~viiqt~~ 380 (505)
T TIGR00595 310 NGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDP--GQVIIQTYN 380 (505)
T ss_pred cCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCC--CEEEEEeCC
Confidence 9999999999999999999999976 45221111122221 2457899999999998864 999987754
No 99
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.90 E-value=8.2e-24 Score=238.65 Aligned_cols=300 Identities=17% Similarity=0.169 Sum_probs=196.6
Q ss_pred cEEEecchHHHHHHHHHHH---hccc---cEE--EEecCcc-------cCCCCceeeecHHHHHHHHhcCcccCCCccEE
Q 039491 445 RAVYTAPIKTISNQKYRDF---SGKF---DVG--LLTGDVS-------LRPEASCLIMTTEILRSMLYRGADIIRDIEWV 509 (1379)
Q Consensus 445 raIylsPtkaLsnQk~~~~---~~~f---~Vg--lltGdv~-------in~~a~IlV~TpEiL~smL~~~~~~l~~v~lV 509 (1379)
.++|+-|.++|+.|.++.+ +... .+. ++.|++- .....+|+|+||++|..++..+...+....++
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFl 367 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFL 367 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEE
Confidence 7999999999999999854 4443 233 5556543 33457999999999999999999999999999
Q ss_pred EEeccCCCCCccchhHHHHHHHHcC------ccceEEEecccCCChH--HHHHHHhhhcCCcEEEEccCCCCcCc--eEE
Q 039491 510 IFDEVHYVNDIERGVVWEEVIIMLP------RHINIVLLSATVPNTV--EFADWIGRTKQKKIRVTGTTKRPVPL--EHC 579 (1379)
Q Consensus 510 I~DEaH~l~d~~rG~v~eeii~~Lp------~~vqiIlLSATvpN~~--efa~wl~~~~~~~i~vi~t~~RpvpL--e~~ 579 (1379)
|+||++.+........+......+| ...|.+..|||+.--. .+++. .+.-|+.|--.....+|- .|+
T Consensus 368 vlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~er---vmhfptwVdLkgeD~vpetvHhv 444 (725)
T KOG0349|consen 368 VLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGER---VMHFPTWVDLKGEDLVPETVHHV 444 (725)
T ss_pred EecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhh---hccCceeEecccccccchhhccc
Confidence 9999999986665555555555554 3578999999975321 22222 223344443333333332 232
Q ss_pred EeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCC
Q 039491 580 LYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGS 659 (1379)
Q Consensus 580 l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~ 659 (1379)
.. +++.. ....|.....-+......+ +++-.+. ..
T Consensus 445 v~-------lv~p~--~d~sw~~lr~~i~td~vh~-----------------------------kdn~~pg------~~- 479 (725)
T KOG0349|consen 445 VK-------LVCPS--VDGSWCDLRQFIETDKVHT-----------------------------KDNLLPG------QV- 479 (725)
T ss_pred ee-------ecCCc--cCccHHHHhhhhccCCccc-----------------------------ccccccc------cC-
Confidence 22 12200 0111222211111110000 0000000 00
Q ss_pred CCCcccccchhHHH---HHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCC
Q 039491 660 QNNWGLRRSEVSIW---LTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRN 736 (1379)
Q Consensus 660 ~~~~~~~~~~~~~~---~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~ 736 (1379)
+....+...++ ..-+..++++...++||||.++..|+.+-..+.+.+-..
T Consensus 480 ---Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~------------------------ 532 (725)
T KOG0349|consen 480 ---SPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKH------------------------ 532 (725)
T ss_pred ---CCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCcc------------------------
Confidence 00000011111 122345566778899999999999999999987754321
Q ss_pred chhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHH
Q 039491 737 LPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEY 816 (1379)
Q Consensus 737 lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~ey 816 (1379)
.....+||+..|.+|..-++.|+++.++.||||+++|+|+||..+-.+|+ ... |-....|
T Consensus 533 ------------~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~in----vtl----pd~k~ny 592 (725)
T KOG0349|consen 533 ------------YSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMIN----VTL----PDDKTNY 592 (725)
T ss_pred ------------ceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEE----Eec----Ccccchh
Confidence 12557999999999999999999999999999999999999999999998 444 6677899
Q ss_pred HHHhcccCCCCCCCcEEEEEEecCC
Q 039491 817 TQMAGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 817 iQmaGRAGRrG~d~~G~vIil~~~~ 841 (1379)
+||+||.||+-+ .|.+|.++...
T Consensus 593 vhrigrvgraer--mglaislvat~ 615 (725)
T KOG0349|consen 593 VHRIGRVGRAER--MGLAISLVATV 615 (725)
T ss_pred hhhhhccchhhh--cceeEEEeecc
Confidence 999999999876 48888887654
No 100
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.89 E-value=2.1e-21 Score=255.15 Aligned_cols=344 Identities=14% Similarity=0.108 Sum_probs=203.8
Q ss_pred CCCCCHHHHHHHHHHH----C-CCcEEEEcCCCccHHHHHHHHHHHHHhc--CCcEEEecchHHHHHHHHHHHhccc-cE
Q 039491 398 PFELDNFQKEAIYYLE----N-GDSVFVAAHTSAGKTVVAEYAFALATKH--CTRAVYTAPIKTISNQKYRDFSGKF-DV 469 (1379)
Q Consensus 398 pFeL~~~Q~eAI~~L~----~-g~sVlV~ApTGSGKTlvae~aI~~~l~~--~~raIylsPtkaLsnQk~~~~~~~f-~V 469 (1379)
.+.|+++|.+||..+. + .++++|+++||||||.++...+...++. ..++|+++|+++|..|....|+... ..
T Consensus 411 ~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 411 GLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 3569999999998764 2 3679999999999999877766666543 4799999999999999999998764 11
Q ss_pred E-----EE--e--cCcccCCCCceeeecHHHHHHHHhcC-----cccCCCccEEEEeccCCCCCc---------------
Q 039491 470 G-----LL--T--GDVSLRPEASCLIMTTEILRSMLYRG-----ADIIRDIEWVIFDEVHYVNDI--------------- 520 (1379)
Q Consensus 470 g-----ll--t--Gdv~in~~a~IlV~TpEiL~smL~~~-----~~~l~~v~lVI~DEaH~l~d~--------------- 520 (1379)
+ +. . ++.....+..|+|+|...+.+.+... ...+..+++||+||||+....
T Consensus 491 ~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~ 570 (1123)
T PRK11448 491 DQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQL 570 (1123)
T ss_pred ccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhh
Confidence 1 11 1 12223446899999999987765332 134678999999999985311
Q ss_pred cchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEcc-----CCCCc----CceEEEe-ecCceeeec
Q 039491 521 ERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGT-----TKRPV----PLEHCLY-YSGEFYKVC 590 (1379)
Q Consensus 521 ~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t-----~~Rpv----pLe~~l~-~~~~l~~i~ 590 (1379)
.+...|..++.+.. ...||||||+... ..+.++ .+++.++. +..-| |.....- ...++. +
T Consensus 571 ~~~~~yr~iL~yFd--A~~IGLTATP~r~--t~~~FG----~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~-~- 640 (1123)
T PRK11448 571 DYVSKYRRVLDYFD--AVKIGLTATPALH--TTEIFG----EPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIH-F- 640 (1123)
T ss_pred hHHHHHHHHHhhcC--ccEEEEecCCccc--hhHHhC----CeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccc-c-
Confidence 01246777777553 5689999996521 123333 34443321 11111 1111000 000000 0
Q ss_pred cCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchh
Q 039491 591 ENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEV 670 (1379)
Q Consensus 591 d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1379)
+.+.. ...+......+......+.. ....... + .. - .......
T Consensus 641 ~~~e~-~~~~~~~~~~i~~~~l~d~~------------~~~~~~~----------~--~~-----v-------i~~~~~~ 683 (1123)
T PRK11448 641 EKGEE-VEVINTQTGEIDLATLEDEV------------DFEVEDF----------N--RR-----V-------ITESFNR 683 (1123)
T ss_pred cccch-hhhcchhhhhhhhccCcHHH------------hhhHHHH----------H--HH-----H-------hhHHHHH
Confidence 00000 00000000000000000000 0000000 0 00 0 0000112
Q ss_pred HHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccc
Q 039491 671 SIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRG 750 (1379)
Q Consensus 671 ~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rG 750 (1379)
.....+++.+......++||||.++.+|+.+++.|.+.. . ...... -...
T Consensus 684 ~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f-~-------------~~~~~~----------------~~~~ 733 (1123)
T PRK11448 684 VVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAF-K-------------KKYGQV----------------EDDA 733 (1123)
T ss_pred HHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHH-H-------------hhcCCc----------------Cccc
Confidence 233445566655555799999999999999999886521 0 000000 0112
Q ss_pred eEEecCCCChHHHHHHHHHhcCCCe-eEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCC
Q 039491 751 IAIHHAGLLPIVKEVIEMLFCRGVV-KVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGL 828 (1379)
Q Consensus 751 IavhHggL~~~~Re~Ve~lF~~G~i-kVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~ 828 (1379)
+...||+.. .++.++..|+++.. +|||+++++.+|+|+|.+.+|+. ++. +.|...|+||+||+.|.-.
T Consensus 734 v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf----~rp----vkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 734 VIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVF----LRR----VRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred eEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEE----ecC----CCCHHHHHHHHhhhccCCc
Confidence 445788875 46779999999876 79999999999999999998887 565 7799999999999999754
No 101
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.89 E-value=5.2e-22 Score=216.65 Aligned_cols=184 Identities=21% Similarity=0.253 Sum_probs=154.7
Q ss_pred ccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc-----CCcE
Q 039491 373 WVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH-----CTRA 446 (1379)
Q Consensus 373 w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~-----~~ra 446 (1379)
|.++...+.+...+.+ ++|+ |+++|++|+..+.+|++++++||||+|||+++.+++...+.. +.++
T Consensus 1 ~~~~~~~~~i~~~l~~--------~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~v 72 (203)
T cd00268 1 FEELGLSPELLRGIYA--------LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQA 72 (203)
T ss_pred CCcCCCCHHHHHHHHH--------cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceE
Confidence 6677778777777766 5777 999999999999999999999999999999998887776643 4689
Q ss_pred EEecchHHHHHHHHHHHhccc-----cEEEEecCcccC-------CCCceeeecHHHHHHHHhcCcccCCCccEEEEecc
Q 039491 447 VYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSLR-------PEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEV 514 (1379)
Q Consensus 447 IylsPtkaLsnQk~~~~~~~f-----~VglltGdv~in-------~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEa 514 (1379)
||++|+++|+.|+...++... .+..++|+.+.. .+.+|+|+||+.|..++.++...+++++++|+||+
T Consensus 73 iii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~ 152 (203)
T cd00268 73 LILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEA 152 (203)
T ss_pred EEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeCh
Confidence 999999999999988887763 677888877642 26789999999999999888888899999999999
Q ss_pred CCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEE
Q 039491 515 HYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRV 566 (1379)
Q Consensus 515 H~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~v 566 (1379)
|.+.+..++..+..++..++.+++++++|||+++. ..+++.....+++.+
T Consensus 153 h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~--~~~~~~~~~~~~~~~ 202 (203)
T cd00268 153 DRMLDMGFEDQIREILKLLPKDRQTLLFSATMPKE--VRDLARKFLRNPVRI 202 (203)
T ss_pred HHhhccChHHHHHHHHHhCCcccEEEEEeccCCHH--HHHHHHHHCCCCEEe
Confidence 99998888999999999999999999999999854 345555554555443
No 102
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=2.7e-21 Score=228.40 Aligned_cols=385 Identities=16% Similarity=0.174 Sum_probs=257.5
Q ss_pred CHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHH------hcCCcEEEecchHHHHHHHHHHHhccc--c----E
Q 039491 402 DNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALAT------KHCTRAVYTAPIKTISNQKYRDFSGKF--D----V 469 (1379)
Q Consensus 402 ~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l------~~~~raIylsPtkaLsnQk~~~~~~~f--~----V 469 (1379)
.+|-.+.+.++..++.+||.|.||||||. .|-+.| +.+.++-++.|.|.-|..+..++.+.. + |
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKTT----QiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eV 342 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKTT----QIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEV 342 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCccc----cccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCccccccc
Confidence 57788999999999999999999999997 344443 445669999999999999888887765 2 3
Q ss_pred EEE--ecCcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHH------HHcCccceEEE
Q 039491 470 GLL--TGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVI------IMLPRHINIVL 541 (1379)
Q Consensus 470 gll--tGdv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii------~~Lp~~vqiIl 541 (1379)
|.- ..|... ...-+-+||.++|..-+... ..+...++||+|||| +|.....-++ ....+..+++.
T Consensus 343 GYsIRFEdcTS-ekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAH-----ERTL~TDILfgLvKDIar~RpdLKllI 415 (902)
T KOG0923|consen 343 GYSIRFEDCTS-EKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAH-----ERTLHTDILFGLVKDIARFRPDLKLLI 415 (902)
T ss_pred ceEEEeccccC-cceeeeeecchhHHHHHhcc-ccccceeEEEeehhh-----hhhhhhhHHHHHHHHHHhhCCcceEEe
Confidence 321 122222 34456799999997766544 457899999999999 4554444443 33457899999
Q ss_pred ecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCC
Q 039491 542 LSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGS 621 (1379)
Q Consensus 542 LSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~ 621 (1379)
.|||+ ++..|..+++ ++.|+.-+.|..|+..++-... ..+|.
T Consensus 416 sSAT~-DAekFS~fFD-----dapIF~iPGRRyPVdi~Yt~~P------------EAdYl-------------------- 457 (902)
T KOG0923|consen 416 SSATM-DAEKFSAFFD-----DAPIFRIPGRRYPVDIFYTKAP------------EADYL-------------------- 457 (902)
T ss_pred ecccc-CHHHHHHhcc-----CCcEEeccCcccceeeecccCC------------chhHH--------------------
Confidence 99997 7888999987 3445566677777665542211 01111
Q ss_pred CCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHH
Q 039491 622 YAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKL 701 (1379)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~l 701 (1379)
...+..+++.......+-+|||.....+.+..
T Consensus 458 ------------------------------------------------dAai~tVlqIH~tqp~GDILVFltGQeEIEt~ 489 (902)
T KOG0923|consen 458 ------------------------------------------------DAAIVTVLQIHLTQPLGDILVFLTGQEEIETV 489 (902)
T ss_pred ------------------------------------------------HHHHhhheeeEeccCCccEEEEeccHHHHHHH
Confidence 11222333333345568899999999888777
Q ss_pred HHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEec
Q 039491 702 ADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFST 781 (1379)
Q Consensus 702 A~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVAT 781 (1379)
...|.. .+.+|...-+++ -|...|+.|+...+..|++---.|.-||++||
T Consensus 490 ~e~l~~------------------~~~~LGski~el------------iv~PiYaNLPselQakIFePtP~gaRKVVLAT 539 (902)
T KOG0923|consen 490 KENLKE------------------RCRRLGSKIREL------------IVLPIYANLPSELQAKIFEPTPPGARKVVLAT 539 (902)
T ss_pred HHHHHH------------------HHHHhccccceE------------EEeeccccCChHHHHhhcCCCCCCceeEEEee
Confidence 666543 223333322222 16678999999999999999999999999999
Q ss_pred ccccccCCCCCceEEEcc----ccccCCc------ccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHH
Q 039491 782 ETFAMGVNAPARTVVFDN----LRKFDGR------EFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHI 851 (1379)
Q Consensus 782 etla~GINiPa~tvVI~~----~~kfDg~------~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~l 851 (1379)
++++..|.|+++..||+. ...|+.+ ...|+|.++-.||+|||||.|- |.|+-+++... ....+
T Consensus 540 NIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgP---GKCfRLYt~~a----Y~~eL 612 (902)
T KOG0923|consen 540 NIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGP---GKCFRLYTAWA----YEHEL 612 (902)
T ss_pred cchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCC---CceEEeechhh----hhhhh
Confidence 999999999999999873 2235443 2346788999999999999994 99999987432 22222
Q ss_pred HhcC-CCcccccccccHHHHHHHHhhccccHHHHHhhChhhHHhcCCcHHHHHHHHHHHcCCCCcccccCCcchHHHHHH
Q 039491 852 IVGS-ATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTIECIKGEPAIEEYYD 930 (1379)
Q Consensus 852 i~g~-~~~L~S~f~lty~miLnLlr~e~~~~e~~l~~SF~e~~~~~~~~~~~~~l~~~l~~~~~~i~c~~~~~~~~~~~~ 930 (1379)
-... |+...-. --|.+|+|+. +.+.+++...|.+- .-.+.+.+.| ..| -.+.+++..+.++...+
T Consensus 613 E~~t~PEIqRtn---L~nvVL~LkS---LGI~Dl~~FdFmDp---Pp~etL~~aL-E~L----yaLGALn~~GeLTk~Gr 678 (902)
T KOG0923|consen 613 EEMTVPEIQRTN---LGNVVLLLKS---LGIHDLIHFDFLDP---PPTETLLKAL-EQL----YALGALNHLGELTKLGR 678 (902)
T ss_pred ccCCCcceeecc---chhHHHHHHh---cCcchhcccccCCC---CChHHHHHHH-HHH----HHhhccccccchhhhhh
Confidence 2111 2222222 2378888875 45677777777543 2333344444 322 23444445555555555
Q ss_pred HHHH
Q 039491 931 MYYE 934 (1379)
Q Consensus 931 ~~~~ 934 (1379)
.+++
T Consensus 679 rMaE 682 (902)
T KOG0923|consen 679 RMAE 682 (902)
T ss_pred hhhh
Confidence 4443
No 103
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=5.9e-20 Score=217.00 Aligned_cols=387 Identities=19% Similarity=0.227 Sum_probs=250.6
Q ss_pred HHHHHHHHHHHCCCcEEEEcCCCccHHHH-HHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc------cEEEE--e
Q 039491 403 NFQKEAIYYLENGDSVFVAAHTSAGKTVV-AEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF------DVGLL--T 473 (1379)
Q Consensus 403 ~~Q~eAI~~L~~g~sVlV~ApTGSGKTlv-ae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f------~Vgll--t 473 (1379)
.++.+.+..+..++.|+|++.||||||.- +.|....-.....-+-++.|.+.-|...++++.+.. .||.- .
T Consensus 359 ~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRF 438 (1042)
T KOG0924|consen 359 ACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRF 438 (1042)
T ss_pred HHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEe
Confidence 77888889999999999999999999973 222222222445678999999999999999888765 33332 2
Q ss_pred cCcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc------CccceEEEecccCC
Q 039491 474 GDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML------PRHINIVLLSATVP 547 (1379)
Q Consensus 474 Gdv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L------p~~vqiIlLSATvp 547 (1379)
.|++- +...|-+||-++|+.-.... ..+.++..||+|||| +|.....-++-.| ..+.++|..|||+
T Consensus 439 EdvT~-~~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAH-----ERslNtDilfGllk~~larRrdlKliVtSATm- 510 (1042)
T KOG0924|consen 439 EDVTS-EDTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAH-----ERSLNTDILFGLLKKVLARRRDLKLIVTSATM- 510 (1042)
T ss_pred eecCC-CceeEEEeccchHHHHHhhh-hhhhheeEEEechhh-----hcccchHHHHHHHHHHHHhhccceEEEeeccc-
Confidence 24332 56778899999997654443 357899999999999 4444333333222 3578999999998
Q ss_pred ChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCC
Q 039491 548 NTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASS 627 (1379)
Q Consensus 548 N~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 627 (1379)
|+..|++++|. |..+.-+.|..|++..+.... -..|..+
T Consensus 511 ~a~kf~nfFgn-----~p~f~IpGRTyPV~~~~~k~p------------~eDYVea------------------------ 549 (1042)
T KOG0924|consen 511 DAQKFSNFFGN-----CPQFTIPGRTYPVEIMYTKTP------------VEDYVEA------------------------ 549 (1042)
T ss_pred cHHHHHHHhCC-----CceeeecCCccceEEEeccCc------------hHHHHHH------------------------
Confidence 78899999983 233444556656553321111 0011110
Q ss_pred CcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHh--
Q 039491 628 PRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGM-- 705 (1379)
Q Consensus 628 ~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L-- 705 (1379)
.+...+........+-++||.......+.....+
T Consensus 550 --------------------------------------------avkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~ 585 (1042)
T KOG0924|consen 550 --------------------------------------------AVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKE 585 (1042)
T ss_pred --------------------------------------------HHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHH
Confidence 0001111111122367899998876555544443
Q ss_pred --hcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEeccc
Q 039491 706 --SGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTET 783 (1379)
Q Consensus 706 --~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATet 783 (1379)
.++..... -.-.|..+++.|+...+..|++.-..|.-|++|||++
T Consensus 586 ~l~ql~~~~~---------------------------------~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNI 632 (1042)
T KOG0924|consen 586 KLEQLDSAPT---------------------------------TDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNI 632 (1042)
T ss_pred HHHhhhcCCC---------------------------------CceEEEeehhhCchhhhhhhcccCCCCceeEEEeccc
Confidence 33221110 0112667899999999999998888999999999999
Q ss_pred ccccCCCCCceEEEcc----ccccCCc------ccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHHh
Q 039491 784 FAMGVNAPARTVVFDN----LRKFDGR------EFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIV 853 (1379)
Q Consensus 784 la~GINiPa~tvVI~~----~~kfDg~------~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li~ 853 (1379)
++..+.+|++.+||+. .+.|+.. ...|+|...--||+|||||.|- |+||-+++.. .....|+.
T Consensus 633 AETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~p---G~cYRlYTe~----ay~~eml~ 705 (1042)
T KOG0924|consen 633 AETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGP---GTCYRLYTED----AYKNEMLP 705 (1042)
T ss_pred hhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCC---cceeeehhhh----HHHhhccc
Confidence 9999999999999862 3334432 3457888999999999999984 9999998754 45556666
Q ss_pred cCCCcccccccccHHHHHHHHhhccccHHHHHhhChhhHHhcCCcHHHHHHHHHHHcCCCCcccccCCcchHHHHHHHHH
Q 039491 854 GSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTIECIKGEPAIEEYYDMYY 933 (1379)
Q Consensus 854 g~~~~L~S~f~lty~miLnLlr~e~~~~e~~l~~SF~e~~~~~~~~~~~~~l~~~l~~~~~~i~c~~~~~~~~~~~~~~~ 933 (1379)
...+.++- .--.|++|-|+. +.++++++..|.+-..+..+ ...+ .+|..+.+++..+.++.....+.
T Consensus 706 stvPEIqR--TNl~nvVLlLks---lgV~dll~FdFmD~Pped~~---~~sl-----y~Lw~LGAl~~~g~LT~lG~~Mv 772 (1042)
T KOG0924|consen 706 STVPEIQR--TNLSNVVLLLKS---LGVDDLLKFDFMDPPPEDNL---LNSL-----YQLWTLGALDNTGQLTPLGRKMV 772 (1042)
T ss_pred CCCchhhh--cchhhHHHHHHh---cChhhhhCCCcCCCCHHHHH---HHHH-----HHHHHhhccccCCccchhhHHhh
Confidence 54443331 222478877764 56688888888653222111 1122 23345555555666666665444
Q ss_pred HH
Q 039491 934 EA 935 (1379)
Q Consensus 934 ~~ 935 (1379)
++
T Consensus 773 ef 774 (1042)
T KOG0924|consen 773 EF 774 (1042)
T ss_pred hC
Confidence 43
No 104
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.84 E-value=1.2e-20 Score=199.06 Aligned_cols=146 Identities=27% Similarity=0.412 Sum_probs=127.3
Q ss_pred CHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCC--cEEEecchHHHHHHHHHHHhccc-----cEEEEec
Q 039491 402 DNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCT--RAVYTAPIKTISNQKYRDFSGKF-----DVGLLTG 474 (1379)
Q Consensus 402 ~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~--raIylsPtkaLsnQk~~~~~~~f-----~VglltG 474 (1379)
+|+|.++++.+.+|+++++.||||+|||+++.+++...+..+. +++|++|+++|++|.++++.+.+ ++..++|
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 5899999999999999999999999999999999988776544 99999999999999999999887 5788888
Q ss_pred CcccC--------CCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcC--ccceEEEecc
Q 039491 475 DVSLR--------PEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLP--RHINIVLLSA 544 (1379)
Q Consensus 475 dv~in--------~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp--~~vqiIlLSA 544 (1379)
+.... .+++|+|+||+.|..++..+...+.++++|||||+|.+.+..++..+..++..+. .+.+++++||
T Consensus 81 ~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SA 160 (169)
T PF00270_consen 81 GQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSA 160 (169)
T ss_dssp TSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEES
T ss_pred cccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEee
Confidence 77632 4689999999999999887544666799999999999998777888888887773 3589999999
Q ss_pred cCC
Q 039491 545 TVP 547 (1379)
Q Consensus 545 Tvp 547 (1379)
|++
T Consensus 161 T~~ 163 (169)
T PF00270_consen 161 TLP 163 (169)
T ss_dssp SST
T ss_pred CCC
Confidence 998
No 105
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.84 E-value=7.2e-20 Score=213.78 Aligned_cols=306 Identities=23% Similarity=0.308 Sum_probs=223.3
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEEEecCcccCC-----CCceeeec
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVSLRP-----EASCLIMT 488 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~in~-----~a~IlV~T 488 (1379)
.+-++-++||.||||. -.++.+....+.+|..|.|-||.++|.++.+.. .+.++||...... .++.+=||
T Consensus 191 RkIi~H~GPTNSGKTy----~ALqrl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGeE~~~~~~~~~~a~hvScT 266 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTY----RALQRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGEERRFVLDNGNPAQHVSCT 266 (700)
T ss_pred heEEEEeCCCCCchhH----HHHHHHhhhccceecchHHHHHHHHHHHhhhcCCCccccccceeeecCCCCCcccceEEE
Confidence 3457889999999995 566777788899999999999999999999998 9999999765432 26777777
Q ss_pred HHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc-CccceEEEecccCCChHHHHHHHhhhcCCcEEEE
Q 039491 489 TEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML-PRHINIVLLSATVPNTVEFADWIGRTKQKKIRVT 567 (1379)
Q Consensus 489 pEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L-p~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi 567 (1379)
.|+.. .-..+++.|+||+++|.|..||..|...+.-+ .+.+.+.+=-|- .++..-+....+..+.|.
T Consensus 267 VEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGepsv----ldlV~~i~k~TGd~vev~ 334 (700)
T KOG0953|consen 267 VEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPSV----LDLVRKILKMTGDDVEVR 334 (700)
T ss_pred EEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCchH----HHHHHHHHhhcCCeeEEE
Confidence 77552 23467899999999999999999998776433 344554443332 233333433334343332
Q ss_pred ccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCC
Q 039491 568 GTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNK 647 (1379)
Q Consensus 568 ~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~ 647 (1379)
. -.|-.||...
T Consensus 335 ~-YeRl~pL~v~-------------------------------------------------------------------- 345 (700)
T KOG0953|consen 335 E-YERLSPLVVE-------------------------------------------------------------------- 345 (700)
T ss_pred e-ecccCcceeh--------------------------------------------------------------------
Confidence 1 1222222100
Q ss_pred ccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHh
Q 039491 648 HSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAF 727 (1379)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~ 727 (1379)
..++..+..-..+-+| .||||+..-.+...+.+.+
T Consensus 346 --------------------------~~~~~sl~nlk~GDCv-V~FSkk~I~~~k~kIE~~g------------------ 380 (700)
T KOG0953|consen 346 --------------------------ETALGSLSNLKPGDCV-VAFSKKDIFTVKKKIEKAG------------------ 380 (700)
T ss_pred --------------------------hhhhhhhccCCCCCeE-EEeehhhHHHHHHHHHHhc------------------
Confidence 0111122222223444 4899999888877765432
Q ss_pred hhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcC--CCeeEEEecccccccCCCCCceEEEccccccCC
Q 039491 728 SRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCR--GVVKVLFSTETFAMGVNAPARTVVFDNLRKFDG 805 (1379)
Q Consensus 728 ~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~--G~ikVLVATetla~GINiPa~tvVI~~~~kfDg 805 (1379)
...++|.+|+|+|+.|..--.+|.+ +..+|||||+..+||+|+.-+++||.+..||+|
T Consensus 381 --------------------~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~IrRiiF~sl~Kysg 440 (700)
T KOG0953|consen 381 --------------------NHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLNIRRIIFYSLIKYSG 440 (700)
T ss_pred --------------------CcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccceeEEEEeecccCCc
Confidence 2237899999999999999999987 899999999999999999999999999999999
Q ss_pred cccccCCHHHHHHHhcccCCCCCC-CcEEEEEEecCCCCCHHHHHHHHhcCCCccc-ccccccHHHHHHH
Q 039491 806 REFRQLLPGEYTQMAGRAGRRGLD-KIGTVVVLCRDEIPGESDLKHIIVGSATRLE-SQFRLTYIMILHL 873 (1379)
Q Consensus 806 ~~~rpls~~eyiQmaGRAGRrG~d-~~G~vIil~~~~~~~~~~l~~li~g~~~~L~-S~f~lty~miLnL 873 (1379)
.+..+++..+..|.+|||||.|.. ..|.+-.+..++ ...+++.+...++++. ..+..|+..|-..
T Consensus 441 ~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD---L~~L~~~l~~p~epi~~agl~pt~eqie~f 507 (700)
T KOG0953|consen 441 RETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED---LKLLKRILKRPVEPIKNAGLWPTDEQIELF 507 (700)
T ss_pred ccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh---HHHHHHHHhCCchHHHhccCCccHHHHHHH
Confidence 999999999999999999998754 358887776654 4888888887777664 4556666655433
No 106
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.83 E-value=2.9e-19 Score=225.00 Aligned_cols=347 Identities=17% Similarity=0.201 Sum_probs=231.8
Q ss_pred CHHHHHHHHHHHCCCcEEEEcCCCccHHHHH-HHHHHHHH--hcCCcEEEecchHHHHHHHHHHHhccc------cEEEE
Q 039491 402 DNFQKEAIYYLENGDSVFVAAHTSAGKTVVA-EYAFALAT--KHCTRAVYTAPIKTISNQKYRDFSGKF------DVGLL 472 (1379)
Q Consensus 402 ~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlva-e~aI~~~l--~~~~raIylsPtkaLsnQk~~~~~~~f------~Vgll 472 (1379)
..++++.+.++.+++.+++++.||+|||+-. .+....+. ....++|++.|.|--|.-.++++...- .||.-
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYq 254 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGYQ 254 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEE
Confidence 5889999999999999999999999999743 33332232 245789999999888888777776543 45554
Q ss_pred ecCcc-cCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCC-CccchhHHHHHHHHcCccceEEEecccCCChH
Q 039491 473 TGDVS-LRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVN-DIERGVVWEEVIIMLPRHINIVLLSATVPNTV 550 (1379)
Q Consensus 473 tGdv~-in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~-d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~ 550 (1379)
.+-.+ ...+..+++||+++|...|.. ...+.++..||+||||.=. +.++-...-..+....++.++|+||||+. +.
T Consensus 255 vrl~~~~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~d-ae 332 (924)
T KOG0920|consen 255 VRLESKRSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLD-AE 332 (924)
T ss_pred EeeecccCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecc-hH
Confidence 33332 334588999999999999876 4568899999999999432 22222222222333457899999999984 77
Q ss_pred HHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcc
Q 039491 551 EFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRD 630 (1379)
Q Consensus 551 efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 630 (1379)
.|.++++ .+.++..+.|.-|+..|+... +...... .... .... .
T Consensus 333 ~fs~YF~-----~~pvi~i~grtfpV~~~fLED-------------------il~~~~~----~~~~------~~~~--~ 376 (924)
T KOG0920|consen 333 LFSDYFG-----GCPVITIPGRTFPVKEYFLED-------------------ILSKTGY----VSED------DSAR--S 376 (924)
T ss_pred HHHHHhC-----CCceEeecCCCcchHHHHHHH-------------------HHHHhcc----cccc------cccc--c
Confidence 8899988 345666666766665433210 0000000 0000 0000 0
Q ss_pred cccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCC-CCCEEEEeCChhHHHHHHHHhhcCC
Q 039491 631 GARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKS-LLPVVIFCFSKNHCDKLADGMSGID 709 (1379)
Q Consensus 631 ~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~-~~pvIVFv~Srk~ce~lA~~L~~~~ 709 (1379)
+ .. .+ ..... + ..-+. ..-+...+..++.++.... .+.+|||.+....+..+...|....
T Consensus 377 ~---~~-----~~--~~~~~----~----~~~~~-~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~ 437 (924)
T KOG0920|consen 377 G---PE-----RS--QLRLA----R----LKLWE-PEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNL 437 (924)
T ss_pred c---cc-----cC--ccccc----c----chhcc-ccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhcc
Confidence 0 00 00 00000 0 00000 0124556667777766554 6789999999999999999886432
Q ss_pred CCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCC
Q 039491 710 LTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVN 789 (1379)
Q Consensus 710 l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GIN 789 (1379)
.-... .+.-|-..|+.|+.++++.|....-.|..|||+||++++.+|.
T Consensus 438 ~f~~~--------------------------------~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSIT 485 (924)
T KOG0920|consen 438 PFADS--------------------------------LKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSIT 485 (924)
T ss_pred ccccc--------------------------------cceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhccc
Confidence 21110 1112567899999999999999999999999999999999999
Q ss_pred CCCceEEEccc----cccCCc------ccccCCHHHHHHHhcccCCCCCCCcEEEEEEecC
Q 039491 790 APARTVVFDNL----RKFDGR------EFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRD 840 (1379)
Q Consensus 790 iPa~tvVI~~~----~kfDg~------~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~ 840 (1379)
||++..||++. ..||.. ...+.+...-.||.|||||.- .|.||-+++.
T Consensus 486 IdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~---~G~cy~L~~~ 543 (924)
T KOG0920|consen 486 IDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVR---PGICYHLYTR 543 (924)
T ss_pred ccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCcc---CCeeEEeech
Confidence 99999999743 336654 233557889999999999985 3999998864
No 107
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=1.5e-18 Score=218.48 Aligned_cols=122 Identities=19% Similarity=0.165 Sum_probs=101.1
Q ss_pred ccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-----cE
Q 039491 395 LDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-----DV 469 (1379)
Q Consensus 395 ~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-----~V 469 (1379)
+.++..+++.|.-.--.|.+|+ ++.++||+|||++|.+|++.....+..+.+++|++.||.|.+..+...+ .|
T Consensus 77 R~lg~~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv 154 (896)
T PRK13104 77 RTLGLRHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTV 154 (896)
T ss_pred HHcCCCcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceE
Confidence 3567667788887777777764 8999999999999999998777677889999999999999999988876 78
Q ss_pred EEEecCcccC-----CCCceeeecHHHH-HHHHhcC-ccc-----CCCccEEEEeccCCCC
Q 039491 470 GLLTGDVSLR-----PEASCLIMTTEIL-RSMLYRG-ADI-----IRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 470 glltGdv~in-----~~a~IlV~TpEiL-~smL~~~-~~~-----l~~v~lVI~DEaH~l~ 518 (1379)
|+++|+.+.. -.++|+|+||+.| .++|..+ ... .+.+.++|+||||.|.
T Consensus 155 ~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 155 GVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred EEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 9999987643 2479999999999 8888765 222 3689999999999875
No 108
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=6.6e-19 Score=220.96 Aligned_cols=351 Identities=17% Similarity=0.140 Sum_probs=220.4
Q ss_pred hhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-----
Q 039491 393 LALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF----- 467 (1379)
Q Consensus 393 ~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f----- 467 (1379)
..+.++..|++.|.-+.-.+..|+ +..+.||+|||++|.+|++.....|..+-+++|+--||.|-++.+...|
T Consensus 73 ~~R~~g~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl 150 (796)
T PRK12906 73 AKRVLGLRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGL 150 (796)
T ss_pred HHHHhCCCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHHhcCC
Confidence 345678788899998888888886 9999999999999999999999999999999999999999999988876
Q ss_pred cEEEEecCcccC-----CCCceeeecHHH-----HHHHHhc--CcccCCCccEEEEeccCCCC-Cccchh----------
Q 039491 468 DVGLLTGDVSLR-----PEASCLIMTTEI-----LRSMLYR--GADIIRDIEWVIFDEVHYVN-DIERGV---------- 524 (1379)
Q Consensus 468 ~VglltGdv~in-----~~a~IlV~TpEi-----L~smL~~--~~~~l~~v~lVI~DEaH~l~-d~~rG~---------- 524 (1379)
.||+++|+.+.. -.++|+.+|..- |++-+.. .....+.+.+.|+||||.+. |..|.+
T Consensus 151 ~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~ 230 (796)
T PRK12906 151 TVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKA 230 (796)
T ss_pred eEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCCcc
Confidence 899999886643 257999999853 3432211 22345788999999999764 322211
Q ss_pred -----HHHHHHHHcCc-------------------cceEEEecc----------cCCCh-----HHHHHHHhhhc-----
Q 039491 525 -----VWEEVIIMLPR-------------------HINIVLLSA----------TVPNT-----VEFADWIGRTK----- 560 (1379)
Q Consensus 525 -----v~eeii~~Lp~-------------------~vqiIlLSA----------TvpN~-----~efa~wl~~~~----- 560 (1379)
.+..++..|.. ..+.+.||. .++|. ..+..|+....
T Consensus 231 ~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l 310 (796)
T PRK12906 231 TDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYI 310 (796)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHH
Confidence 11222222221 112333332 11221 12345554311
Q ss_pred --C--------CcEEEEc-cCCCC-------------------c------------------CceEEEeecCceeeeccC
Q 039491 561 --Q--------KKIRVTG-TTKRP-------------------V------------------PLEHCLYYSGEFYKVCEN 592 (1379)
Q Consensus 561 --~--------~~i~vi~-t~~Rp-------------------v------------------pLe~~l~~~~~l~~i~d~ 592 (1379)
+ +.+.++. ...|. + -+-..++-..+--.- +.
T Consensus 311 ~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~-e~ 389 (796)
T PRK12906 311 MLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKT-EE 389 (796)
T ss_pred HhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHH-HH
Confidence 1 1122221 01110 0 011222221100000 00
Q ss_pred cccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHH
Q 039491 593 EAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSI 672 (1379)
Q Consensus 593 ~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1379)
..|.+. + +.+... .|......+ + -.+ ...-.....+
T Consensus 390 -----~Ef~~i---Y----~l~vv~----IPtnkp~~r-------------------~------d~~---d~i~~t~~~K 425 (796)
T PRK12906 390 -----EEFREI---Y----NMEVIT----IPTNRPVIR-------------------K------DSP---DLLYPTLDSK 425 (796)
T ss_pred -----HHHHHH---h----CCCEEE----cCCCCCeee-------------------e------eCC---CeEEcCHHHH
Confidence 000000 0 000000 000000000 0 000 0001123456
Q ss_pred HHHHHHHHHh--CCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccc
Q 039491 673 WLTLINKLSK--KSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRG 750 (1379)
Q Consensus 673 ~~~Li~~L~~--~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rG 750 (1379)
+..+++.+.. ..+.|+||||.|+..++.++..|.+.++..
T Consensus 426 ~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~-------------------------------------- 467 (796)
T PRK12906 426 FNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPH-------------------------------------- 467 (796)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCe--------------------------------------
Confidence 6677777633 367899999999999999999998876653
Q ss_pred eEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCC---Cce-----EEEccccccCCcccccCCHHHHHHHhcc
Q 039491 751 IAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAP---ART-----VVFDNLRKFDGREFRQLLPGEYTQMAGR 822 (1379)
Q Consensus 751 IavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiP---a~t-----vVI~~~~kfDg~~~rpls~~eyiQmaGR 822 (1379)
.++||++...+++.|...++.|. |+|||++++||.||+ .+. +||. ++. |.+...|.|+.||
T Consensus 468 -~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~----te~----pes~ri~~Ql~GR 536 (796)
T PRK12906 468 -AVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIG----TER----HESRRIDNQLRGR 536 (796)
T ss_pred -eEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEe----eec----CCcHHHHHHHhhh
Confidence 46999999888888888888887 999999999999995 788 8998 665 8899999999999
Q ss_pred cCCCCCCCcEEEEEEecCC
Q 039491 823 AGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 823 AGRrG~d~~G~vIil~~~~ 841 (1379)
|||.|.. |.++++++-+
T Consensus 537 tGRqG~~--G~s~~~~sle 553 (796)
T PRK12906 537 SGRQGDP--GSSRFYLSLE 553 (796)
T ss_pred hccCCCC--cceEEEEecc
Confidence 9999975 8888887654
No 109
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=5.2e-19 Score=212.14 Aligned_cols=346 Identities=18% Similarity=0.183 Sum_probs=214.3
Q ss_pred HHHHHHHHHCCCcEEEEcCCCccHHHH---HHHH--HHHH-HhcCCcEEEecchHHHHHHHHHHHhccc-----cEEEEe
Q 039491 405 QKEAIYYLENGDSVFVAAHTSAGKTVV---AEYA--FALA-TKHCTRAVYTAPIKTISNQKYRDFSGKF-----DVGLLT 473 (1379)
Q Consensus 405 Q~eAI~~L~~g~sVlV~ApTGSGKTlv---ae~a--I~~~-l~~~~raIylsPtkaLsnQk~~~~~~~f-----~Vgllt 473 (1379)
-++.+.+|..+.-|+||+.||||||.- |+|- .+.. ...+.-+=||-|.|.-+.-...+....+ .|+...
T Consensus 261 Eq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqI 340 (1172)
T KOG0926|consen 261 EQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQI 340 (1172)
T ss_pred HHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEE
Confidence 456788889999999999999999973 1111 1111 0124578899999987777666665443 566533
Q ss_pred -cCcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcC----------------cc
Q 039491 474 -GDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLP----------------RH 536 (1379)
Q Consensus 474 -Gdv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp----------------~~ 536 (1379)
=|.+++++.+|.+||.++|..-+.+. ..+..+..||+|||| +|.+...-+|-||. ..
T Consensus 341 Rfd~ti~e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAH-----ERSvnTDILiGmLSRiV~LR~k~~ke~~~~kp 414 (1172)
T KOG0926|consen 341 RFDGTIGEDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAH-----ERSVNTDILIGMLSRIVPLRQKYYKEQCQIKP 414 (1172)
T ss_pred EeccccCCCceeEEecchHHHHHHHHh-HhhhhceeEEechhh-----hccchHHHHHHHHHHHHHHHHHHhhhhcccCc
Confidence 36678899999999999998776543 568899999999999 66666666665542 25
Q ss_pred ceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhcccccc
Q 039491 537 INIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAAS 616 (1379)
Q Consensus 537 vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~ 616 (1379)
.++|.||||+.- .+|.+--. ....+.-++.-+.|..|+..++-... ...+
T Consensus 415 LKLIIMSATLRV-sDFtenk~-LFpi~pPlikVdARQfPVsIHF~krT-------~~DY--------------------- 464 (1172)
T KOG0926|consen 415 LKLIIMSATLRV-SDFTENKR-LFPIPPPLIKVDARQFPVSIHFNKRT-------PDDY--------------------- 464 (1172)
T ss_pred eeEEEEeeeEEe-cccccCce-ecCCCCceeeeecccCceEEEeccCC-------CchH---------------------
Confidence 689999999632 12221000 00111113333444444332210000 0001
Q ss_pred CCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChh
Q 039491 617 GATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKN 696 (1379)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk 696 (1379)
....+...+...++-..+-++||+....
T Consensus 465 ----------------------------------------------------i~eAfrKtc~IH~kLP~G~ILVFvTGQq 492 (1172)
T KOG0926|consen 465 ----------------------------------------------------IAEAFRKTCKIHKKLPPGGILVFVTGQQ 492 (1172)
T ss_pred ----------------------------------------------------HHHHHHHHHHHhhcCCCCcEEEEEeChH
Confidence 1223334444455556677888888888
Q ss_pred HHHHHHHHhhcCC---CCCch----------hhh---HH---------------------HHH-HHH-------Hhhhcc
Q 039491 697 HCDKLADGMSGID---LTSSS----------EKS---EI---------------------RVF-CDK-------AFSRLK 731 (1379)
Q Consensus 697 ~ce~lA~~L~~~~---l~~~~----------ek~---~i---------------------~~~-~~~-------~~~~L~ 731 (1379)
+++.+...|++.- +...+ .++ .+ ..+ ++. +...+.
T Consensus 493 EV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~ 572 (1172)
T KOG0926|consen 493 EVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALA 572 (1172)
T ss_pred HHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccc
Confidence 8888888886531 11000 000 00 000 000 011111
Q ss_pred CCCCC---ch--hH--HHHHHhhc--------cceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEE
Q 039491 732 GSDRN---LP--QI--VRVQSLLR--------RGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVV 796 (1379)
Q Consensus 732 ~edr~---lp--qi--~~l~~lL~--------rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvV 796 (1379)
+++.. .+ .. ..+..-.. --|..+++-|+...+..|+..--.|.--++|||++++..+.||++.+|
T Consensus 573 De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYV 652 (1172)
T KOG0926|consen 573 DENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYV 652 (1172)
T ss_pred cccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEE
Confidence 10000 00 00 00111111 125677899999999999999999999999999999999999999999
Q ss_pred Ecc----ccccCCc------ccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCC
Q 039491 797 FDN----LRKFDGR------EFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 797 I~~----~~kfDg~------~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~ 841 (1379)
++. .+.||.. ...++|..+--||+|||||.|- |+||-++...
T Consensus 653 VD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgp---GHcYRLYSSA 704 (1172)
T KOG0926|consen 653 VDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGP---GHCYRLYSSA 704 (1172)
T ss_pred EeccchhhhccccccCceeEEEEeeeccccchhccccCCCCC---CceeehhhhH
Confidence 873 4557653 3456788889999999999994 9999998764
No 110
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=1.8e-18 Score=217.88 Aligned_cols=123 Identities=17% Similarity=0.145 Sum_probs=101.4
Q ss_pred hccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-----c
Q 039491 394 ALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-----D 468 (1379)
Q Consensus 394 a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-----~ 468 (1379)
.+.++..|++.|.-.--.|.+|+ +..+.||+|||++|.+|++...-.|..+-+++|+..||.|.++.+...| .
T Consensus 75 ~R~lg~~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGls 152 (830)
T PRK12904 75 KRVLGMRHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLS 152 (830)
T ss_pred HHHhCCCCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCe
Confidence 34577778899998888887775 9999999999999999996444456678999999999999999999877 7
Q ss_pred EEEEecCcccCC-----CCceeeecHHHH-HHHHhcCc------ccCCCccEEEEeccCCCC
Q 039491 469 VGLLTGDVSLRP-----EASCLIMTTEIL-RSMLYRGA------DIIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 469 VglltGdv~in~-----~a~IlV~TpEiL-~smL~~~~------~~l~~v~lVI~DEaH~l~ 518 (1379)
||+++|+.+... .++|+++|+..| .++|.... ...+.+.++|+||||.|.
T Consensus 153 v~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 153 VGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred EEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 899999876432 479999999999 77776543 246889999999999874
No 111
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.78 E-value=1.1e-17 Score=214.84 Aligned_cols=312 Identities=19% Similarity=0.202 Sum_probs=193.2
Q ss_pred CCHHHHHHHHHHHCC---C-cEEEEcCCCccHHHHHHHHHHHHHh----cCCcEEEecchHHHHHHHHHHHhccc---c-
Q 039491 401 LDNFQKEAIYYLENG---D-SVFVAAHTSAGKTVVAEYAFALATK----HCTRAVYTAPIKTISNQKYRDFSGKF---D- 468 (1379)
Q Consensus 401 L~~~Q~eAI~~L~~g---~-sVlV~ApTGSGKTlvae~aI~~~l~----~~~raIylsPtkaLsnQk~~~~~~~f---~- 468 (1379)
..++|..++..+.+. . .+++.||||+|||.++.......+. ...|+||+.|++++.+++++.+++.+ .
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccccc
Confidence 579999999987543 3 7889999999999987665555443 37899999999999999999999877 1
Q ss_pred EEE-EecCccc----CC-----------------CCceeeecHHHHHHHHhcCccc--CC--CccEEEEeccCCCCCccc
Q 039491 469 VGL-LTGDVSL----RP-----------------EASCLIMTTEILRSMLYRGADI--IR--DIEWVIFDEVHYVNDIER 522 (1379)
Q Consensus 469 Vgl-ltGdv~i----n~-----------------~a~IlV~TpEiL~smL~~~~~~--l~--~v~lVI~DEaH~l~d~~r 522 (1379)
.+. ++|.... .+ -..+.++||-....+...+... +. -.+.|||||+|.+.+..-
T Consensus 276 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~ 355 (733)
T COG1203 276 IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETM 355 (733)
T ss_pred ccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccch
Confidence 222 2332221 11 0123344443332222222111 11 246899999999987631
Q ss_pred hhHHHHHHHHc-CccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHH
Q 039491 523 GVVWEEVIIML-PRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWK 601 (1379)
Q Consensus 523 G~v~eeii~~L-p~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~ 601 (1379)
-.....++..+ .-++.+|++|||+|.... +.+.........+..... ..|..... .+..
T Consensus 356 ~~~l~~~i~~l~~~g~~ill~SATlP~~~~--~~l~~~~~~~~~~~~~~~-~~~~~~e~-------------~~~~---- 415 (733)
T COG1203 356 LAALLALLEALAEAGVPVLLMSATLPPFLK--EKLKKALGKGREVVENAK-FCPKEDEP-------------GLKR---- 415 (733)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCHHHH--HHHHHHHhcccceecccc-cccccccc-------------cccc----
Confidence 22223333333 347899999999998642 223222222222211111 11100000 0000
Q ss_pred HHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHH
Q 039491 602 AAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLS 681 (1379)
Q Consensus 602 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~ 681 (1379)
..+..- . . . .......... ..
T Consensus 416 ----------------------------------------~~~~~~--~---------~---~---~~~~~~~~~~--~~ 436 (733)
T COG1203 416 ----------------------------------------KERVDV--E---------D---G---PQEELIELIS--EE 436 (733)
T ss_pred ----------------------------------------ccchhh--h---------h---h---hhHhhhhcch--hh
Confidence 000000 0 0 0 0000000111 12
Q ss_pred hCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChH
Q 039491 682 KKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPI 761 (1379)
Q Consensus 682 ~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~ 761 (1379)
-..+.+++|-|||.+.|.+++..|+..+. -+..+||.++..
T Consensus 437 ~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~---------------------------------------~v~LlHSRf~~~ 477 (733)
T COG1203 437 VKEGKKVLVIVNTVDRAIELYEKLKEKGP---------------------------------------KVLLLHSRFTLK 477 (733)
T ss_pred hccCCcEEEEEecHHHHHHHHHHHHhcCC---------------------------------------CEEEEecccchh
Confidence 23457999999999999999999987543 166799999999
Q ss_pred HHHHHHHHh----cCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEE
Q 039491 762 VKEVIEMLF----CRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVL 837 (1379)
Q Consensus 762 ~Re~Ve~lF----~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil 837 (1379)
+|+..+..+ +.+...|+|||.+.+.|||+. .+++|.. +....+.+||+||++|.|.+..|.+++.
T Consensus 478 dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe----------~aPidSLIQR~GRv~R~g~~~~~~~~v~ 546 (733)
T COG1203 478 DREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITE----------LAPIDSLIQRAGRVNRHGKKENGKIYVY 546 (733)
T ss_pred hHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeec----------CCCHHHHHHHHHHHhhcccccCCceeEe
Confidence 998888854 457889999999999999997 6667663 3456789999999999997767888888
Q ss_pred ecCC
Q 039491 838 CRDE 841 (1379)
Q Consensus 838 ~~~~ 841 (1379)
...+
T Consensus 547 ~~~~ 550 (733)
T COG1203 547 NDEE 550 (733)
T ss_pred eccc
Confidence 7654
No 112
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.77 E-value=4.3e-17 Score=211.30 Aligned_cols=376 Identities=15% Similarity=0.107 Sum_probs=216.6
Q ss_pred CCCHHHHHHHHHH----HCCCcEEEEcCCCccHHHHHHHHHHHHHh---cCCcEEEecchHHHHHHHHHHHhccc---cE
Q 039491 400 ELDNFQKEAIYYL----ENGDSVFVAAHTSAGKTVVAEYAFALATK---HCTRAVYTAPIKTISNQKYRDFSGKF---DV 469 (1379)
Q Consensus 400 eL~~~Q~eAI~~L----~~g~sVlV~ApTGSGKTlvae~aI~~~l~---~~~raIylsPtkaLsnQk~~~~~~~f---~V 469 (1379)
+|++||.+++..+ .+|.+.|++-..|.|||+.+...+..... ....+||++|. +|..||.++|.+.+ ++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCCCce
Confidence 6889999999887 36788999999999999976444433222 23578999995 77788999998876 67
Q ss_pred EEEecCccc----------CCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceE
Q 039491 470 GLLTGDVSL----------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINI 539 (1379)
Q Consensus 470 glltGdv~i----------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqi 539 (1379)
..++|+... ....+|+|+|++.+...... ..--.+++||+||||++.+. .......+..+.. ...
T Consensus 248 ~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L~a-~~R 322 (1033)
T PLN03142 248 VKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLFST-NYR 322 (1033)
T ss_pred EEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCH--HHHHHHHHHHhhc-CcE
Confidence 778886431 23578999999988654321 11235789999999999864 3334445555554 345
Q ss_pred EEeccc-CCCh-HHHHHHHhhhcCCcEE-------------------------------EEccC------CCCcCceEEE
Q 039491 540 VLLSAT-VPNT-VEFADWIGRTKQKKIR-------------------------------VTGTT------KRPVPLEHCL 580 (1379)
Q Consensus 540 IlLSAT-vpN~-~efa~wl~~~~~~~i~-------------------------------vi~t~------~RpvpLe~~l 580 (1379)
++|||| +.|. .++...+......... ++... .-|...++.+
T Consensus 323 LLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv 402 (1033)
T PLN03142 323 LLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETIL 402 (1033)
T ss_pred EEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeEEE
Confidence 899999 3343 3544433322111000 00000 0011111111
Q ss_pred eecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCC
Q 039491 581 YYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQ 660 (1379)
Q Consensus 581 ~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~ 660 (1379)
+ +.-......-|...........+..... ..........++... ..... .....+ ... ..+....
T Consensus 403 ~--------v~LS~~Qk~lY~~ll~k~~~~l~~g~~~-~~LlnilmqLRk~cn-HP~L~-~~~ep~-~~~---~~~e~li 467 (1033)
T PLN03142 403 K--------VGMSQMQKQYYKALLQKDLDVVNAGGER-KRLLNIAMQLRKCCN-HPYLF-QGAEPG-PPY---TTGEHLV 467 (1033)
T ss_pred e--------eCCCHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHhC-CHHhh-hccccc-Ccc---cchhHHh
Confidence 1 1100000111111111000000000000 000000000000000 00000 000000 000 0000000
Q ss_pred CCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhH
Q 039491 661 NNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQI 740 (1379)
Q Consensus 661 ~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi 740 (1379)
..++ ....+..++..+... +.++|||+......+.+...|...++.
T Consensus 468 e~Sg----Kl~lLdkLL~~Lk~~-g~KVLIFSQft~~LdiLed~L~~~g~~----------------------------- 513 (1033)
T PLN03142 468 ENSG----KMVLLDKLLPKLKER-DSRVLIFSQMTRLLDILEDYLMYRGYQ----------------------------- 513 (1033)
T ss_pred hhhh----HHHHHHHHHHHHHhc-CCeEEeehhHHHHHHHHHHHHHHcCCc-----------------------------
Confidence 0000 122344455555443 579999999888888777777554332
Q ss_pred HHHHHhhccceEEecCCCChHHHHHHHHHhcCC---CeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHH
Q 039491 741 VRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRG---VVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYT 817 (1379)
Q Consensus 741 ~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G---~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyi 817 (1379)
...+||+++..+|+.++..|.+. ..-+|++|.+.+.|||+...++||. ||. +++|....
T Consensus 514 ----------y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi----yD~----dWNP~~d~ 575 (1033)
T PLN03142 514 ----------YCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL----YDS----DWNPQVDL 575 (1033)
T ss_pred ----------EEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE----eCC----CCChHHHH
Confidence 45689999999999999999753 3467999999999999999999999 999 99999999
Q ss_pred HHhcccCCCCCCCcEEEEEEecCCCCCHHHH
Q 039491 818 QMAGRAGRRGLDKIGTVVVLCRDEIPGESDL 848 (1379)
Q Consensus 818 QmaGRAGRrG~d~~G~vIil~~~~~~~~~~l 848 (1379)
|+.|||.|.|+...-.||.++..+..+...+
T Consensus 576 QAidRaHRIGQkk~V~VyRLIt~gTIEEkIl 606 (1033)
T PLN03142 576 QAQDRAHRIGQKKEVQVFRFCTEYTIEEKVI 606 (1033)
T ss_pred HHHHHhhhcCCCceEEEEEEEeCCcHHHHHH
Confidence 9999999999988778888887765344444
No 113
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.73 E-value=1.4e-16 Score=199.47 Aligned_cols=141 Identities=23% Similarity=0.242 Sum_probs=114.8
Q ss_pred CCCHHHHHHHHHHHCC----CcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc--cEEEEe
Q 039491 400 ELDNFQKEAIYYLENG----DSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF--DVGLLT 473 (1379)
Q Consensus 400 eL~~~Q~eAI~~L~~g----~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f--~Vgllt 473 (1379)
.+.+-|+.|+..+... ...++.+.||||||-+|+-+|+..+..|+.+|+++|-.+|-.|...+|+..| +|++++
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlH 277 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLH 277 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhc
Confidence 5889999999998554 5789999999999999999999999999999999999999999999999999 899999
Q ss_pred cCccc-----------CCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCC---CccchhHHHHHHHHcC--ccc
Q 039491 474 GDVSL-----------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVN---DIERGVVWEEVIIMLP--RHI 537 (1379)
Q Consensus 474 Gdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~---d~~rG~v~eeii~~Lp--~~v 537 (1379)
++.+- +.++.|+|+|--.+. ..+.++++||+||=|--. +........++..+.. .++
T Consensus 278 S~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~ 350 (730)
T COG1198 278 SGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENA 350 (730)
T ss_pred ccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCC
Confidence 88872 457899999965442 357899999999999653 1122333444444332 468
Q ss_pred eEEEecccCC
Q 039491 538 NIVLLSATVP 547 (1379)
Q Consensus 538 qiIlLSATvp 547 (1379)
.+|+=|||.+
T Consensus 351 pvvLgSATPS 360 (730)
T COG1198 351 PVVLGSATPS 360 (730)
T ss_pred CEEEecCCCC
Confidence 9999999953
No 114
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.73 E-value=1.6e-15 Score=198.61 Aligned_cols=65 Identities=17% Similarity=0.104 Sum_probs=57.1
Q ss_pred CCCCCCHHHHHHHH----HHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHH
Q 039491 397 FPFELDNFQKEAIY----YLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYR 461 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~----~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~ 461 (1379)
.+|++++.|.+.+. ++.+++++++.||||+|||++|++|++.....+.+++|.+||++|..|.+.
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~~~~vvi~t~t~~Lq~Ql~~ 310 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAITEKPVVISTNTKVLQSQLLE 310 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHH
Confidence 67899999998666 456788999999999999999999987766677899999999999999864
No 115
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=7.4e-16 Score=194.01 Aligned_cols=125 Identities=13% Similarity=0.149 Sum_probs=107.1
Q ss_pred hccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-----c
Q 039491 394 ALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-----D 468 (1379)
Q Consensus 394 a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-----~ 468 (1379)
....||.++|||.++++.+..++++++.|+||+|||++|.+|++..+..+..+++++|+++||.|.++.+...+ +
T Consensus 86 G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~lGLs 165 (970)
T PRK12899 86 GYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLT 165 (970)
T ss_pred cccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhcCCe
Confidence 34567778999999999999999999999999999999999999777566679999999999999998888765 7
Q ss_pred EEEEecCcccCC-----CCceeeecHHHH-HHHHhcCcccC-------CCccEEEEeccCCCC
Q 039491 469 VGLLTGDVSLRP-----EASCLIMTTEIL-RSMLYRGADII-------RDIEWVIFDEVHYVN 518 (1379)
Q Consensus 469 VglltGdv~in~-----~a~IlV~TpEiL-~smL~~~~~~l-------~~v~lVI~DEaH~l~ 518 (1379)
++.+.|+..+.. .++|+|+||+.| .+++..+...+ +.+.++|+||||.|.
T Consensus 166 V~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 166 TGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred EEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 889999887543 479999999999 99998764444 456899999999875
No 116
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.72 E-value=9.5e-16 Score=193.53 Aligned_cols=112 Identities=18% Similarity=0.203 Sum_probs=96.7
Q ss_pred CCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHH
Q 039491 684 SLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVK 763 (1379)
Q Consensus 684 ~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~R 763 (1379)
.+.++||||+|++.|+.++..|...++. ++++||++...+|
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~---------------------------------------~~~lh~~~~~~eR 481 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIK---------------------------------------VRYLHSEIDTLER 481 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccc---------------------------------------eeeeeCCCCHHHH
Confidence 4578999999999999999999876654 4568999999999
Q ss_pred HHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCccc-ccCCHHHHHHHhcccCCCCCCCcEEEEEEecCC
Q 039491 764 EVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREF-RQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 764 e~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~-rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~ 841 (1379)
..++..|+.|.+.|||||+.+++|+|+|.+++|+. +|..-+ .|.+...|+||+|||||.. .|.|+++++..
T Consensus 482 ~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi----~DadifG~p~~~~~~iqriGRagR~~---~G~vi~~~~~~ 553 (655)
T TIGR00631 482 VEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI----LDADKEGFLRSERSLIQTIGRAARNV---NGKVIMYADKI 553 (655)
T ss_pred HHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEE----eCcccccCCCCHHHHHHHhcCCCCCC---CCEEEEEEcCC
Confidence 99999999999999999999999999999998876 443211 2778999999999999974 49999998754
No 117
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=7.9e-16 Score=193.66 Aligned_cols=122 Identities=16% Similarity=0.130 Sum_probs=99.7
Q ss_pred ccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-----cE
Q 039491 395 LDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-----DV 469 (1379)
Q Consensus 395 ~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-----~V 469 (1379)
+.++..+++.|.-.--.+.+| -++.++||.|||++|.+|++.....+..|.+++|+..||.|-++.+...| .|
T Consensus 77 R~lgm~~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv 154 (908)
T PRK13107 77 RVFEMRHFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLTV 154 (908)
T ss_pred HHhCCCcCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 457777788888776666666 48999999999999999998877788889999999999999888887766 78
Q ss_pred EEEecCcccCC-----CCceeeecHHHH-HHHHhcC-cc-----cCCCccEEEEeccCCCC
Q 039491 470 GLLTGDVSLRP-----EASCLIMTTEIL-RSMLYRG-AD-----IIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 470 glltGdv~in~-----~a~IlV~TpEiL-~smL~~~-~~-----~l~~v~lVI~DEaH~l~ 518 (1379)
|+++|+.+... .++|+++|+..| .++|..+ .. ..+.+.++|+||||.|.
T Consensus 155 ~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 155 GINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred EEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 98888876321 589999999988 7776654 22 23789999999999875
No 118
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.69 E-value=3e-15 Score=190.80 Aligned_cols=142 Identities=15% Similarity=0.171 Sum_probs=98.6
Q ss_pred CCHHHHHHHHHH----HC------CCcEEEEcCCCccHHHHHHHHHHHHH--hcCCcEEEecchHHHHHHHHHHHhccc-
Q 039491 401 LDNFQKEAIYYL----EN------GDSVFVAAHTSAGKTVVAEYAFALAT--KHCTRAVYTAPIKTISNQKYRDFSGKF- 467 (1379)
Q Consensus 401 L~~~Q~eAI~~L----~~------g~sVlV~ApTGSGKTlvae~aI~~~l--~~~~raIylsPtkaLsnQk~~~~~~~f- 467 (1379)
++.+|.+|+..+ .+ .+..++.++||||||+++...+...+ ....++|+++|+++|..|+.+.|....
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~ 318 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQK 318 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCC
Confidence 789999999875 22 35799999999999999877766554 345789999999999999999999865
Q ss_pred cEEEEecCcc------cCCCCceeeecHHHHHHHHhcCcc--cCCCc-cEEEEeccCCCCCccchhHHHHHH-HHcCccc
Q 039491 468 DVGLLTGDVS------LRPEASCLIMTTEILRSMLYRGAD--IIRDI-EWVIFDEVHYVNDIERGVVWEEVI-IMLPRHI 537 (1379)
Q Consensus 468 ~VglltGdv~------in~~a~IlV~TpEiL~smL~~~~~--~l~~v-~lVI~DEaH~l~d~~rG~v~eeii-~~Lp~~v 537 (1379)
......+... .+.+..|+|+|...|.+.+..... ....- -+||+||||+... | .|...+ ..+| +.
T Consensus 319 ~~~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~---~-~~~~~l~~~~p-~a 393 (667)
T TIGR00348 319 DCAERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY---G-ELAKNLKKALK-NA 393 (667)
T ss_pred CCCcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc---h-HHHHHHHhhCC-CC
Confidence 2111111110 123468999999999764432111 11111 2899999998753 3 344444 4565 47
Q ss_pred eEEEecccCC
Q 039491 538 NIVLLSATVP 547 (1379)
Q Consensus 538 qiIlLSATvp 547 (1379)
.+++||||+-
T Consensus 394 ~~lGfTaTP~ 403 (667)
T TIGR00348 394 SFFGFTGTPI 403 (667)
T ss_pred cEEEEeCCCc
Confidence 8999999974
No 119
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.68 E-value=2e-15 Score=185.42 Aligned_cols=146 Identities=17% Similarity=0.150 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHH----HCC-CcEEEEcCCCccHHHHHHHHHHHHHhcC--CcEEEecchHHHHHHHHHHHhccc---cE
Q 039491 400 ELDNFQKEAIYYL----ENG-DSVFVAAHTSAGKTVVAEYAFALATKHC--TRAVYTAPIKTISNQKYRDFSGKF---DV 469 (1379)
Q Consensus 400 eL~~~Q~eAI~~L----~~g-~sVlV~ApTGSGKTlvae~aI~~~l~~~--~raIylsPtkaLsnQk~~~~~~~f---~V 469 (1379)
.++.+|..||..+ .+| +.+++++.||+|||..|.-.|.+.++.+ +|+|+++-+++|..|.+..|...+ ..
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~ 244 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGTK 244 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCccc
Confidence 3899999999775 444 3599999999999999876676666554 899999999999999999988877 33
Q ss_pred EEEecCcccCCCCceeeecHHHHHHHHhcC-----cccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecc
Q 039491 470 GLLTGDVSLRPEASCLIMTTEILRSMLYRG-----ADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSA 544 (1379)
Q Consensus 470 glltGdv~in~~a~IlV~TpEiL~smL~~~-----~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSA 544 (1379)
-....+........|.|+|...+...+... ......+++||+||||+-. ...|..++.++.. -+++|||
T Consensus 245 ~n~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~~I~dYFdA--~~~gLTA 318 (875)
T COG4096 245 MNKIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWSSILDYFDA--ATQGLTA 318 (875)
T ss_pred eeeeecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhHHHHHHHHH--HHHhhcc
Confidence 333334444446789999999888766543 2234468999999999633 4457788887764 3455699
Q ss_pred cCCChHH
Q 039491 545 TVPNTVE 551 (1379)
Q Consensus 545 TvpN~~e 551 (1379)
|+.+..+
T Consensus 319 TP~~~~d 325 (875)
T COG4096 319 TPKETID 325 (875)
T ss_pred Ccccccc
Confidence 9876544
No 120
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.68 E-value=1.5e-15 Score=175.20 Aligned_cols=384 Identities=17% Similarity=0.212 Sum_probs=234.4
Q ss_pred HHHHHHHHHHHCCCcEEEEcCCCccHHH-HHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc--cEEEEecCcccC
Q 039491 403 NFQKEAIYYLENGDSVFVAAHTSAGKTV-VAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF--DVGLLTGDVSLR 479 (1379)
Q Consensus 403 ~~Q~eAI~~L~~g~sVlV~ApTGSGKTl-vae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f--~VglltGdv~in 479 (1379)
..+.+-+..+.+++.+++++.||||||. +-.+.+...+.+.+.+.++.|.|.-+.+...+..+.. .+|--.|- +|.
T Consensus 50 ~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGy-sIr 128 (699)
T KOG0925|consen 50 EQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGY-SIR 128 (699)
T ss_pred HhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHhccccchhccc-ccc
Confidence 4445556667888999999999999995 2223333334445789999999999999999998877 33333332 221
Q ss_pred ------CCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc------CccceEEEecccCC
Q 039491 480 ------PEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML------PRHINIVLLSATVP 547 (1379)
Q Consensus 480 ------~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L------p~~vqiIlLSATvp 547 (1379)
++.-.-.||.+.|..-.- ....+..++++|+|||| +|......+.-.| .+..++|.+|||+
T Consensus 129 fEdC~~~~T~Lky~tDgmLlrEam-s~p~l~~y~viiLDeah-----ERtlATDiLmGllk~v~~~rpdLk~vvmSatl- 201 (699)
T KOG0925|consen 129 FEDCTSPNTLLKYCTDGMLLREAM-SDPLLGRYGVIILDEAH-----ERTLATDILMGLLKEVVRNRPDLKLVVMSATL- 201 (699)
T ss_pred ccccCChhHHHHHhcchHHHHHHh-hCcccccccEEEechhh-----hhhHHHHHHHHHHHHHHhhCCCceEEEeeccc-
Confidence 111223566665543322 23468899999999999 5544433332222 3589999999997
Q ss_pred ChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCC
Q 039491 548 NTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASS 627 (1379)
Q Consensus 548 N~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 627 (1379)
....|..+.+. .|+. .-+. .-|.+.++++.. . .
T Consensus 202 ~a~Kfq~yf~n---~Pll--~vpg-~~PvEi~Yt~e~-------e-----r----------------------------- 234 (699)
T KOG0925|consen 202 DAEKFQRYFGN---APLL--AVPG-THPVEIFYTPEP-------E-----R----------------------------- 234 (699)
T ss_pred chHHHHHHhCC---CCee--ecCC-CCceEEEecCCC-------C-----h-----------------------------
Confidence 45567777663 2222 2222 234444433211 0 0
Q ss_pred CcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhc
Q 039491 628 PRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSG 707 (1379)
Q Consensus 628 ~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~ 707 (1379)
..-...+..+++.......+-++||..+..+.+..++.+..
T Consensus 235 ---------------------------------------DylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~r 275 (699)
T KOG0925|consen 235 ---------------------------------------DYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISR 275 (699)
T ss_pred ---------------------------------------hHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHH
Confidence 00223345566666666678999999999998888887753
Q ss_pred CCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcC---C--CeeEEEecc
Q 039491 708 IDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCR---G--VVKVLFSTE 782 (1379)
Q Consensus 708 ~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~---G--~ikVLVATe 782 (1379)
.. +.|... +..-.|..+| |.++..+++-... | .-||+|+|.
T Consensus 276 e~------------------~~L~~~------------~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstn 321 (699)
T KOG0925|consen 276 EV------------------DNLGPQ------------VGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTN 321 (699)
T ss_pred HH------------------Hhhccc------------cCCceEEecC----chhhccccCCCCcccCCCccceEEEEec
Confidence 10 011100 0111244455 5555544443322 2 458999999
Q ss_pred cccccCCCCCceEEEcc----ccccCCc------ccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHH
Q 039491 783 TFAMGVNAPARTVVFDN----LRKFDGR------EFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHII 852 (1379)
Q Consensus 783 tla~GINiPa~tvVI~~----~~kfDg~------~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li 852 (1379)
+++..+.++.+.+||+. .+.|+++ -.+|+|..+-.||+|||||.. .|.|+.+++++. .-+.|.
T Consensus 322 iaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~---pGkcfrLYte~~----~~~em~ 394 (699)
T KOG0925|consen 322 IAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR---PGKCFRLYTEEA----FEKEMQ 394 (699)
T ss_pred chheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCC---CCceEEeecHHh----hhhcCC
Confidence 99999999999999872 2335543 356788999999999999975 499999987542 111222
Q ss_pred h-cCCCcccccccccHHHHHHHHhhccccHHHHHhhChhhHHhcCCcHHHHHHHHHHHcCCCCcccccCCcchHHHHHHH
Q 039491 853 V-GSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTIECIKGEPAIEEYYDM 931 (1379)
Q Consensus 853 ~-g~~~~L~S~f~lty~miLnLlr~e~~~~e~~l~~SF~e~~~~~~~~~~~~~l~~~l~~~~~~i~c~~~~~~~~~~~~~ 931 (1379)
. ..|+-++|.+. +++|.|-++ .+.++....|.+ ...-..+.+++ +.+..+.|++++++++++..+
T Consensus 395 ~~typeilrsNL~---s~VL~LKkl---gI~dlvhfdfmD---pPAPEtLMrAL-----E~LnYLaaLdDdGnLT~lG~i 460 (699)
T KOG0925|consen 395 PQTYPEILRSNLS---STVLQLKKL---GIDDLVHFDFMD---PPAPETLMRAL-----EVLNYLAALDDDGNLTSLGEI 460 (699)
T ss_pred CCCcHHHHHHhhH---HHHHHHHhc---CcccccCCcCCC---CCChHHHHHHH-----HHhhhhhhhCCCcccchhhhh
Confidence 1 12334455544 677776553 344444444433 33323345555 345678889999999998876
Q ss_pred HHHH
Q 039491 932 YYEA 935 (1379)
Q Consensus 932 ~~~~ 935 (1379)
+.+.
T Consensus 461 mSEF 464 (699)
T KOG0925|consen 461 MSEF 464 (699)
T ss_pred hhcC
Confidence 6553
No 121
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.68 E-value=1.1e-15 Score=163.00 Aligned_cols=158 Identities=30% Similarity=0.344 Sum_probs=130.2
Q ss_pred CCCCCCHHHHHHHHHHHCC-CcEEEEcCCCccHHHHHHHHHHHHHhcC--CcEEEecchHHHHHHHHHHHhccc------
Q 039491 397 FPFELDNFQKEAIYYLENG-DSVFVAAHTSAGKTVVAEYAFALATKHC--TRAVYTAPIKTISNQKYRDFSGKF------ 467 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~L~~g-~sVlV~ApTGSGKTlvae~aI~~~l~~~--~raIylsPtkaLsnQk~~~~~~~f------ 467 (1379)
.+++++++|.+++..+..+ +++++.++||+|||.++..++...+... .+++|++|+++++.|++..+...+
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLK 84 (201)
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeE
Confidence 3456999999999999888 9999999999999998888888887665 889999999999999999998766
Q ss_pred cEEEEecCcc------cCCCC-ceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEE
Q 039491 468 DVGLLTGDVS------LRPEA-SCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIV 540 (1379)
Q Consensus 468 ~VglltGdv~------in~~a-~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiI 540 (1379)
....+.+... ..... +++++|++.+.+.+.........++++|+||+|++....+...+..++..++...+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v 164 (201)
T smart00487 85 VVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLL 164 (201)
T ss_pred EEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEE
Confidence 1333444332 23333 9999999999998887766678899999999999987667888888888888889999
Q ss_pred EecccCCChHHHHH
Q 039491 541 LLSATVPNTVEFAD 554 (1379)
Q Consensus 541 lLSATvpN~~efa~ 554 (1379)
++|||+++..+...
T Consensus 165 ~~saT~~~~~~~~~ 178 (201)
T smart00487 165 LLSATPPEEIENLL 178 (201)
T ss_pred EEecCCchhHHHHH
Confidence 99999886654333
No 122
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.68 E-value=5.4e-15 Score=183.64 Aligned_cols=124 Identities=19% Similarity=0.213 Sum_probs=95.9
Q ss_pred hhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEE-
Q 039491 393 LALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVG- 470 (1379)
Q Consensus 393 ~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~Vg- 470 (1379)
+.+..+|+|...|+-....+.+|+|.-+.||||.|||.-.....+-....|.|++|++||..|+.|.++.+.+.. +.|
T Consensus 75 F~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~ 154 (1187)
T COG1110 75 FKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGS 154 (1187)
T ss_pred HHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCC
Confidence 556689999999999999999999999999999999975433333333567999999999999999999998865 222
Q ss_pred ----E-EecCccc-----------CCCCceeeecHHHHHHHHhcCcccCC--CccEEEEeccCCCCCc
Q 039491 471 ----L-LTGDVSL-----------RPEASCLIMTTEILRSMLYRGADIIR--DIEWVIFDEVHYVNDI 520 (1379)
Q Consensus 471 ----l-ltGdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l~--~v~lVI~DEaH~l~d~ 520 (1379)
+ ++|..+. +.+.+|+|+|..-|..... .+. ++++|++|.||-+.-.
T Consensus 155 ~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e----~L~~~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 155 LDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFE----ELSKLKFDFIFVDDVDAILKA 218 (1187)
T ss_pred cceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHH----HhcccCCCEEEEccHHHHHhc
Confidence 1 4555432 3468999999987754432 233 6899999999977644
No 123
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.65 E-value=2.5e-14 Score=181.79 Aligned_cols=111 Identities=18% Similarity=0.209 Sum_probs=95.5
Q ss_pred CCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHH
Q 039491 684 SLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVK 763 (1379)
Q Consensus 684 ~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~R 763 (1379)
.+.++||||.|++.|+.++..|...++. +.++||++...+|
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~---------------------------------------~~~~h~~~~~~~R 485 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIK---------------------------------------VRYLHSDIDTLER 485 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhccee---------------------------------------EEEEECCCCHHHH
Confidence 4578999999999999999999876553 4579999999999
Q ss_pred HHHHHHhcCCCeeEEEecccccccCCCCCceEEEc-cccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecC
Q 039491 764 EVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFD-NLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRD 840 (1379)
Q Consensus 764 e~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~-~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~ 840 (1379)
..++..|+.|.+.|||||+.+++|+|+|.+++||. ....|+. |.+...|+||+|||||. . .|.||++++.
T Consensus 486 ~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~eifG~----~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~ 556 (652)
T PRK05298 486 VEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGF----LRSERSLIQTIGRAARN-V--NGKVILYADK 556 (652)
T ss_pred HHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCccccc----CCCHHHHHHHhccccCC-C--CCEEEEEecC
Confidence 99999999999999999999999999999998876 2222333 56889999999999995 3 4999999974
No 124
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.61 E-value=4.3e-14 Score=165.85 Aligned_cols=109 Identities=18% Similarity=0.253 Sum_probs=95.3
Q ss_pred CCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHH
Q 039491 685 LLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKE 764 (1379)
Q Consensus 685 ~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re 764 (1379)
+.+++|-+-|++.||.+.++|...|+. +.+.|+++...+|-
T Consensus 446 ~eRvLVTtLTKkmAEdLT~Yl~e~gik---------------------------------------v~YlHSdidTlER~ 486 (663)
T COG0556 446 NERVLVTTLTKKMAEDLTEYLKELGIK---------------------------------------VRYLHSDIDTLERV 486 (663)
T ss_pred CCeEEEEeehHHHHHHHHHHHHhcCce---------------------------------------EEeeeccchHHHHH
Confidence 379999999999999999999987765 56899999999999
Q ss_pred HHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCC--cccccCCHHHHHHHhcccCCCCCCCcEEEEEEecC
Q 039491 765 VIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDG--REFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRD 840 (1379)
Q Consensus 765 ~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg--~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~ 840 (1379)
.|+...+.|.++|||.-+.+-+|+|+|.++.|.- .|. .+| ..|-.+.+|-+|||.|.- .|.||++++.
T Consensus 487 eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAI----lDADKeGF-LRse~SLIQtIGRAARN~---~GkvIlYAD~ 556 (663)
T COG0556 487 EIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI----LDADKEGF-LRSERSLIQTIGRAARNV---NGKVILYADK 556 (663)
T ss_pred HHHHHHhcCCccEEEeehhhhccCCCcceeEEEE----eecCcccc-ccccchHHHHHHHHhhcc---CCeEEEEchh
Confidence 9999999999999999999999999999998844 332 233 568889999999999975 3999998764
No 125
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.58 E-value=7.7e-14 Score=162.69 Aligned_cols=339 Identities=13% Similarity=0.073 Sum_probs=222.7
Q ss_pred HHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHH--hcCCcEEEecchHHHHHHHHH
Q 039491 385 RFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALAT--KHCTRAVYTAPIKTISNQKYR 461 (1379)
Q Consensus 385 ~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l--~~~~raIylsPtkaLsnQk~~ 461 (1379)
.|-+++|......--+ ...+|.+++..+.+|+++.+.-.|+|||.+++..+....+ .+.+..+|.+|+++++....+
T Consensus 270 ~~~E~~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~ 349 (1034)
T KOG4150|consen 270 DFWESIRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSK 349 (1034)
T ss_pred hHHHHHHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCC
Confidence 3445555543333333 6799999999999999999999999999999888765544 466789999999999876655
Q ss_pred HHhccc---------cEEEEecCcc------cCCCCceeeecHHHHHH-HHhcC---cccCCCccEEEEeccCCCCCccc
Q 039491 462 DFSGKF---------DVGLLTGDVS------LRPEASCLIMTTEILRS-MLYRG---ADIIRDIEWVIFDEVHYVNDIER 522 (1379)
Q Consensus 462 ~~~~~f---------~VglltGdv~------in~~a~IlV~TpEiL~s-mL~~~---~~~l~~v~lVI~DEaH~l~d~~r 522 (1379)
.+.-.. -|....|+.. ++..+++++..|....+ .|-+. ...+-...+++.||+|...-. +
T Consensus 350 ~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~ 428 (1034)
T KOG4150|consen 350 GQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-T 428 (1034)
T ss_pred ceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-h
Confidence 443222 1223333333 23457888888865543 33222 123445678999999976543 2
Q ss_pred hhHHHHHHHHc---------CccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCc
Q 039491 523 GVVWEEVIIML---------PRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENE 593 (1379)
Q Consensus 523 G~v~eeii~~L---------p~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~ 593 (1379)
|.....++..| ....+++-.|||+-+......-+.. -..+.++..+..|..-.|++.....+.+-
T Consensus 429 ~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~--~~E~~Li~~DGSPs~~K~~V~WNP~~~P~---- 502 (1034)
T KOG4150|consen 429 KALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELAN--LSELELVTIDGSPSSEKLFVLWNPSAPPT---- 502 (1034)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcC--CcceEEEEecCCCCccceEEEeCCCCCCc----
Confidence 33333333222 3468999999998877654333322 23566676777777666655432200000
Q ss_pred ccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHH
Q 039491 594 AFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIW 673 (1379)
Q Consensus 594 ~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1379)
..+. +.+.....
T Consensus 503 -------------------------------------------------------------------~~~~-~~~~i~E~ 514 (1034)
T KOG4150|consen 503 -------------------------------------------------------------------SKSE-KSSKVVEV 514 (1034)
T ss_pred -------------------------------------------------------------------chhh-hhhHHHHH
Confidence 0000 00011122
Q ss_pred HHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEE
Q 039491 674 LTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAI 753 (1379)
Q Consensus 674 ~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIav 753 (1379)
.+++-.+..+ +.++|.||.+|+-||-+....++.-..+.. . |-.-|.-
T Consensus 515 s~~~~~~i~~-~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~--~-----------------------------LV~~i~S 562 (1034)
T KOG4150|consen 515 SHLFAEMVQH-GLRCIAFCPSRKLCELVLCLTREILAETAP--H-----------------------------LVEAITS 562 (1034)
T ss_pred HHHHHHHHHc-CCcEEEeccHHHHHHHHHHHHHHHHHHhhH--H-----------------------------HHHHHHh
Confidence 3333333333 489999999999999887665543222211 0 0111334
Q ss_pred ecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEE
Q 039491 754 HHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGT 833 (1379)
Q Consensus 754 hHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~ 833 (1379)
+.||-...+|..||...--|.++-++||+.++.|||+-..+.|++ .+. |.|...+.|.+||||||..+....
T Consensus 563 YRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~----~GF----P~S~aNl~QQ~GRAGRRNk~SLav 634 (1034)
T KOG4150|consen 563 YRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLH----LGF----PGSIANLWQQAGRAGRRNKPSLAV 634 (1034)
T ss_pred hcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEE----ccC----chhHHHHHHHhccccccCCCceEE
Confidence 889999999999999999999999999999999999999999998 666 999999999999999999885544
Q ss_pred EEEEe
Q 039491 834 VVVLC 838 (1379)
Q Consensus 834 vIil~ 838 (1379)
+|...
T Consensus 635 yva~~ 639 (1034)
T KOG4150|consen 635 YVAFL 639 (1034)
T ss_pred EEEec
Confidence 44443
No 126
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.57 E-value=1.6e-14 Score=153.99 Aligned_cols=141 Identities=23% Similarity=0.267 Sum_probs=102.0
Q ss_pred CCCCHHHHHHHHHHHC-------CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc--cE
Q 039491 399 FELDNFQKEAIYYLEN-------GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF--DV 469 (1379)
Q Consensus 399 FeL~~~Q~eAI~~L~~-------g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f--~V 469 (1379)
|+|+++|.+|+..+.+ +.++++.||||||||.++..++..... ++++++|++.|.+|+..+|.... ..
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~---~~l~~~p~~~l~~Q~~~~~~~~~~~~~ 78 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR---KVLIVAPNISLLEQWYDEFDDFGSEKY 78 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC---EEEEEESSHHHHHHHHHHHHHHSTTSE
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc---ceeEecCHHHHHHHHHHHHHHhhhhhh
Confidence 5789999999998752 589999999999999998866666655 99999999999999999995444 11
Q ss_pred EEEecC---------------------cccCCCCceeeecHHHHHHHHhcCc-----------ccCCCccEEEEeccCCC
Q 039491 470 GLLTGD---------------------VSLRPEASCLIMTTEILRSMLYRGA-----------DIIRDIEWVIFDEVHYV 517 (1379)
Q Consensus 470 glltGd---------------------v~in~~a~IlV~TpEiL~smL~~~~-----------~~l~~v~lVI~DEaH~l 517 (1379)
...... .....+.++++.|...|.+...... ......++||+||||++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~ 158 (184)
T PF04851_consen 79 NFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHY 158 (184)
T ss_dssp EEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCT
T ss_pred hhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhc
Confidence 111100 0123457899999999987765421 23456789999999998
Q ss_pred CCccchhHHHHHHHHcCccceEEEecccCC
Q 039491 518 NDIERGVVWEEVIIMLPRHINIVLLSATVP 547 (1379)
Q Consensus 518 ~d~~rG~v~eeii~~Lp~~vqiIlLSATvp 547 (1379)
.... .|.+++. .....+|+||||+.
T Consensus 159 ~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 159 PSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp HHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred CCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 6322 1777766 55678999999974
No 127
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.54 E-value=3.1e-13 Score=171.10 Aligned_cols=122 Identities=18% Similarity=0.135 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHHHh--CCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHh
Q 039491 669 EVSIWLTLINKLSK--KSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSL 746 (1379)
Q Consensus 669 ~~~~~~~Li~~L~~--~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~l 746 (1379)
...++..+++.+.. ..+.|+||||.|+..++.++..|...++..
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h---------------------------------- 625 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAH---------------------------------- 625 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCc----------------------------------
Confidence 34567777777743 356899999999999999999998876653
Q ss_pred hccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCC---CceE-----EEccccccCCcccccCCHHHHHH
Q 039491 747 LRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAP---ARTV-----VFDNLRKFDGREFRQLLPGEYTQ 818 (1379)
Q Consensus 747 L~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiP---a~tv-----VI~~~~kfDg~~~rpls~~eyiQ 818 (1379)
.++|+ .+..|+..+..|+.+...|+|||++++||+||+ .+.. ||. + .++-+...|.|
T Consensus 626 -----~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIg----t----erhes~Rid~Q 690 (1025)
T PRK12900 626 -----NVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILG----S----ERHESRRIDRQ 690 (1025)
T ss_pred -----eeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeC----C----CCCchHHHHHH
Confidence 34776 588999999999999999999999999999999 4422 354 2 23778889999
Q ss_pred HhcccCCCCCCCcEEEEEEecCC
Q 039491 819 MAGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 819 maGRAGRrG~d~~G~vIil~~~~ 841 (1379)
++|||||.|.. |.++++++.+
T Consensus 691 l~GRtGRqGdp--GsS~ffvSle 711 (1025)
T PRK12900 691 LRGRAGRQGDP--GESVFYVSLE 711 (1025)
T ss_pred HhhhhhcCCCC--cceEEEechh
Confidence 99999999965 9999988754
No 128
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.54 E-value=5e-16 Score=192.52 Aligned_cols=177 Identities=28% Similarity=0.414 Sum_probs=146.8
Q ss_pred CCHHHHHHHHHHH-CCCcEEEEcCCCccHHHHHHHHHHHHHh--cCCcEEEecchHHHHHHHHHHHhccc-----cEEEE
Q 039491 401 LDNFQKEAIYYLE-NGDSVFVAAHTSAGKTVVAEYAFALATK--HCTRAVYTAPIKTISNQKYRDFSGKF-----DVGLL 472 (1379)
Q Consensus 401 L~~~Q~eAI~~L~-~g~sVlV~ApTGSGKTlvae~aI~~~l~--~~~raIylsPtkaLsnQk~~~~~~~f-----~Vgll 472 (1379)
+.|.|.+.+.++. -..++++-||||+|||++|+.++..++. .+.+++|++|.++|......++..++ +++-+
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~ 1007 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIEL 1007 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEec
Confidence 5678888877763 3568999999999999999999999984 46899999999999999999999887 47778
Q ss_pred ecCcccC----CCCceeeecHHHHHHHHh--cCcccCCCccEEEEeccCCCCCccchhHHHHHHHH-------cCccceE
Q 039491 473 TGDVSLR----PEASCLIMTTEILRSMLY--RGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIM-------LPRHINI 539 (1379)
Q Consensus 473 tGdv~in----~~a~IlV~TpEiL~smL~--~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~-------Lp~~vqi 539 (1379)
+||+.-. .+++|+|.||+.+..... .....++++..+|+||.|++.+ +||++.|.+... .++.+++
T Consensus 1008 tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n~~s~~t~~~vr~ 1086 (1230)
T KOG0952|consen 1008 TGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMNYISSQTEEPVRY 1086 (1230)
T ss_pred cCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccccccC-CCcceEEEEeeccccCccccCcchhh
Confidence 8888755 357999999998876655 4567889999999999999986 789998765432 3467899
Q ss_pred EEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEe
Q 039491 540 VLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLY 581 (1379)
Q Consensus 540 IlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~ 581 (1379)
++||--+.|+.++++|++... .+-+....||||++.++-
T Consensus 1087 ~glsta~~na~dla~wl~~~~---~~nf~~svrpvp~~~~i~ 1125 (1230)
T KOG0952|consen 1087 LGLSTALANANDLADWLNIKD---MYNFRPSVRPVPLEVHID 1125 (1230)
T ss_pred hhHhhhhhccHHHHHHhCCCC---cCCCCcccccCCceEeec
Confidence 999999999999999999543 366777899999987763
No 129
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.53 E-value=2.7e-12 Score=166.72 Aligned_cols=63 Identities=19% Similarity=0.244 Sum_probs=53.4
Q ss_pred CCCCCCHHHHH---HHHH-HHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHH
Q 039491 397 FPFELDNFQKE---AIYY-LENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKY 460 (1379)
Q Consensus 397 ~pFeL~~~Q~e---AI~~-L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~ 460 (1379)
-+|+.++-|.+ +|.. +..++.+++.|+||+|||++|.+|++... .+.++|+.+||++|++|.+
T Consensus 242 ~~~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-~~~~vvI~t~T~~Lq~Ql~ 308 (820)
T PRK07246 242 LGLEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-DQRQIIVSVPTKILQDQIM 308 (820)
T ss_pred CCCccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-CCCcEEEEeCcHHHHHHHH
Confidence 36899999999 4433 46678899999999999999999976644 5689999999999999994
No 130
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.51 E-value=4.7e-12 Score=167.14 Aligned_cols=64 Identities=19% Similarity=0.189 Sum_probs=54.5
Q ss_pred CCCCCHHHHHHHHH----HHCCCcEEEEcCCCccHHHHHHHHHHHHH-hcCCcEEEecchHHHHHHHHH
Q 039491 398 PFELDNFQKEAIYY----LENGDSVFVAAHTSAGKTVVAEYAFALAT-KHCTRAVYTAPIKTISNQKYR 461 (1379)
Q Consensus 398 pFeL~~~Q~eAI~~----L~~g~sVlV~ApTGSGKTlvae~aI~~~l-~~~~raIylsPtkaLsnQk~~ 461 (1379)
+|++++-|.+-+.. +.+++.++|.||||+|||++|++|.+... ..+.++||.++|++|..|.+.
T Consensus 255 ~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~ 323 (928)
T PRK08074 255 KYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLE 323 (928)
T ss_pred CCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHH
Confidence 58999999995544 46778899999999999999999976644 578999999999999999764
No 131
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.50 E-value=6.5e-14 Score=162.03 Aligned_cols=300 Identities=16% Similarity=0.149 Sum_probs=198.7
Q ss_pred CCHHHHHHHHHHHCC---CcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-----cEEEE
Q 039491 401 LDNFQKEAIYYLENG---DSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-----DVGLL 472 (1379)
Q Consensus 401 L~~~Q~eAI~~L~~g---~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-----~Vgll 472 (1379)
++|||..++..+..+ ++.+++.|.|||||+|..-|+. .-.+++|+++..-.-+.||...|+... .++.+
T Consensus 303 iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~---tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rF 379 (776)
T KOG1123|consen 303 IRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC---TIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRF 379 (776)
T ss_pred cCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee---eecccEEEEecCccCHHHHHHHHHhhcccCccceEEe
Confidence 899999999998543 6889999999999998554433 335779999998888899988888765 68889
Q ss_pred ecCccc--CCCCceeeecHHHHHHHHhcCc------c--cCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEe
Q 039491 473 TGDVSL--RPEASCLIMTTEILRSMLYRGA------D--IIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLL 542 (1379)
Q Consensus 473 tGdv~i--n~~a~IlV~TpEiL~smL~~~~------~--~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlL 542 (1379)
|.|..- ..++.|+|.|+.++..--.+.. + .-+.++++|+||||.+-. ..+..++.....|++ ++|
T Consensus 380 Tsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA----~MFRRVlsiv~aHcK-LGL 454 (776)
T KOG1123|consen 380 TSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPA----KMFRRVLSIVQAHCK-LGL 454 (776)
T ss_pred eccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchH----HHHHHHHHHHHHHhh-ccc
Confidence 998874 3457899999876632211110 1 235789999999999874 444555555555554 899
Q ss_pred cccCCChHH--------------HHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHH
Q 039491 543 SATVPNTVE--------------FADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYK 608 (1379)
Q Consensus 543 SATvpN~~e--------------fa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~ 608 (1379)
|||+-...+ -|+|+...+++.|--+....--.|.. ..| |.... .
T Consensus 455 TATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt---------------~eF----y~eYL---~ 512 (776)
T KOG1123|consen 455 TATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMT---------------PEF----YREYL---R 512 (776)
T ss_pred eeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCC---------------HHH----HHHHH---h
Confidence 999642211 26777766555443332211111110 011 11111 0
Q ss_pred hhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCE
Q 039491 609 RKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPV 688 (1379)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pv 688 (1379)
........ .+ -+....-....-||+...+ .+.++
T Consensus 513 ~~t~kr~l-------------------Ly--------------------------vMNP~KFraCqfLI~~HE~-RgDKi 546 (776)
T KOG1123|consen 513 ENTRKRML-------------------LY--------------------------VMNPNKFRACQFLIKFHER-RGDKI 546 (776)
T ss_pred hhhhhhhe-------------------ee--------------------------ecCcchhHHHHHHHHHHHh-cCCeE
Confidence 00000000 00 0000012234456666555 46899
Q ss_pred EEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHH
Q 039491 689 VIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEM 768 (1379)
Q Consensus 689 IVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~ 768 (1379)
|||..+.-.-.++|-.|.+ -+++|..++.+|..|++
T Consensus 547 IVFsDnvfALk~YAikl~K--------------------------------------------pfIYG~Tsq~ERm~ILq 582 (776)
T KOG1123|consen 547 IVFSDNVFALKEYAIKLGK--------------------------------------------PFIYGPTSQNERMKILQ 582 (776)
T ss_pred EEEeccHHHHHHHHHHcCC--------------------------------------------ceEECCCchhHHHHHHH
Confidence 9999998888888777654 25899999999999999
Q ss_pred HhcC-CCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCC
Q 039491 769 LFCR-GVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRG 827 (1379)
Q Consensus 769 lF~~-G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG 827 (1379)
.|+- ..++-+|-.-+....+|+|..+|+|.-.. |.| |-..-.||.||.-|+.
T Consensus 583 nFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISS-H~G------SRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 583 NFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISS-HGG------SRRQEAQRLGRILRAK 635 (776)
T ss_pred hcccCCccceEEEeeccCccccCCcccEEEEEcc-ccc------chHHHHHHHHHHHHHh
Confidence 9985 58999999999999999999999987333 444 4556789999887753
No 132
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.47 E-value=5.2e-13 Score=134.10 Aligned_cols=131 Identities=26% Similarity=0.353 Sum_probs=101.9
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHHh--cCCcEEEecchHHHHHHHHHHHhccc----cEEEEecCccc-------CCCC
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALATK--HCTRAVYTAPIKTISNQKYRDFSGKF----DVGLLTGDVSL-------RPEA 482 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l~--~~~raIylsPtkaLsnQk~~~~~~~f----~VglltGdv~i-------n~~a 482 (1379)
+++++.+|||+|||.++...+..... ...+++|++|+++|++|....+...+ .+..+.+.... ....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKLLSGKT 80 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHHhcCCC
Confidence 46899999999999998888777764 56899999999999999988887765 46666665442 3568
Q ss_pred ceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccC
Q 039491 483 SCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATV 546 (1379)
Q Consensus 483 ~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATv 546 (1379)
+++++|++.+...+.........+++|||||+|.+................+...+++++|||+
T Consensus 81 ~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 81 DIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 9999999988777666555567899999999999986544433322344456778999999995
No 133
>COG4889 Predicted helicase [General function prediction only]
Probab=99.45 E-value=6.5e-13 Score=161.14 Aligned_cols=356 Identities=18% Similarity=0.196 Sum_probs=188.9
Q ss_pred CCCCCCHHHHHHHHHHHCC----CcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc----c
Q 039491 397 FPFELDNFQKEAIYYLENG----DSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF----D 468 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~L~~g----~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f----~ 468 (1379)
-|.+|+|+|++||....+| ...=+.+..|+|||+.++ -|..++.. .+++|++|+.+|..|.+++|...- .
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala~-~~iL~LvPSIsLLsQTlrew~~~~~l~~~ 235 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALAA-ARILFLVPSISLLSQTLREWTAQKELDFR 235 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHhh-hheEeecchHHHHHHHHHHHhhccCccce
Confidence 4778999999999987554 333455667999999864 44455544 889999999999999999998753 3
Q ss_pred EEEEecCcccCC--------------------------------CCceeeecHHHHHHHHhcCcccCCCccEEEEeccCC
Q 039491 469 VGLLTGDVSLRP--------------------------------EASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHY 516 (1379)
Q Consensus 469 VglltGdv~in~--------------------------------~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~ 516 (1379)
...++.|..... .-.|+++|+..+-..-.....-+..+++||.||||+
T Consensus 236 a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAHR 315 (1518)
T COG4889 236 ASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAHR 315 (1518)
T ss_pred eEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchhc
Confidence 333333333211 124677888776554443444578899999999998
Q ss_pred CCCccchhHHHHHHHHcC-----ccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeecc
Q 039491 517 VNDIERGVVWEEVIIMLP-----RHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCE 591 (1379)
Q Consensus 517 l~d~~rG~v~eeii~~Lp-----~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d 591 (1379)
.........-...+..+. +..+.+.|+||.--..|-+. +..+.....+.+-+.... .
T Consensus 316 TtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K--~kAkd~s~~l~SMDDe~~-------f--------- 377 (1518)
T COG4889 316 TTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSK--AKAKDHSAELSSMDDELT-------F--------- 377 (1518)
T ss_pred cccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhh--hhhhhccceeeccchhhh-------h---------
Confidence 642211100001111111 23456889999532222111 001111111111111000 0
Q ss_pred CcccchhhHHHHHHHH-Hhhcc-----cccc-CCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcc
Q 039491 592 NEAFIPQGWKAAKDAY-KRKNL-----SAAS-GATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWG 664 (1379)
Q Consensus 592 ~~~f~~~~~~~~~~~l-~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~ 664 (1379)
...|..-+|.++...- ...-+ -+.. .+....... .+... +
T Consensus 378 Geef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~----~~~~~-----------------------------~ 424 (1518)
T COG4889 378 GEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVL----SGPSK-----------------------------G 424 (1518)
T ss_pred chhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhc----cCccc-----------------------------c
Confidence 0111111222221110 00000 0000 000000000 00000 0
Q ss_pred cccchhHHHHHHHHHHHh---------------CCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhh
Q 039491 665 LRRSEVSIWLTLINKLSK---------------KSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSR 729 (1379)
Q Consensus 665 ~~~~~~~~~~~Li~~L~~---------------~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~ 729 (1379)
........+...-+-|.+ ....++|-||.+.+....++..+.. +++.+...
T Consensus 425 L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~--------------Vve~Y~~E 490 (1518)
T COG4889 425 LALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFET--------------VVEAYDEE 490 (1518)
T ss_pred cchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHH--------------HHHHHHHH
Confidence 000000011111111111 1123577888888888888877643 12222222
Q ss_pred ccCCCCCchhHHHHHHhhccceEEec--CCCChHHHHHHHHH---hcCCCeeEEEecccccccCCCCCceEEEccccccC
Q 039491 730 LKGSDRNLPQIVRVQSLLRRGIAIHH--AGLLPIVKEVIEML---FCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFD 804 (1379)
Q Consensus 730 L~~edr~lpqi~~l~~lL~rGIavhH--ggL~~~~Re~Ve~l---F~~G~ikVLVATetla~GINiPa~tvVI~~~~kfD 804 (1379)
+.....+ | .|.+-| |.|...+|+..+.+ |.....|||-....+++|||+|+.+-||- ||
T Consensus 491 lk~d~~n----------L--~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViF----f~ 554 (1518)
T COG4889 491 LKKDFKN----------L--KISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIF----FD 554 (1518)
T ss_pred HHhcCCC----------c--eEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEE----ec
Confidence 3222122 1 244445 77888888665553 45678999999999999999999998887 88
Q ss_pred CcccccCCHHHHHHHhcccCCCCC-CCcEEEEEEec
Q 039491 805 GREFRQLLPGEYTQMAGRAGRRGL-DKIGTVVVLCR 839 (1379)
Q Consensus 805 g~~~rpls~~eyiQmaGRAGRrG~-d~~G~vIil~~ 839 (1379)
+ -.+..+.+|-+||..|... ...|.+|+-+.
T Consensus 555 p----r~smVDIVQaVGRVMRKa~gK~yGYIILPIa 586 (1518)
T COG4889 555 P----RSSMVDIVQAVGRVMRKAKGKKYGYIILPIA 586 (1518)
T ss_pred C----chhHHHHHHHHHHHHHhCcCCccceEEEEec
Confidence 8 5678999999999999532 23688776653
No 134
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.44 E-value=2.1e-11 Score=147.99 Aligned_cols=377 Identities=20% Similarity=0.183 Sum_probs=217.4
Q ss_pred CCCCCHHHHHHHHHH----HCCCcEEEEcCCCccHHHH--HHHHHHHHHhc-CCcEEEecchHHHHHHHHHHHhccc---
Q 039491 398 PFELDNFQKEAIYYL----ENGDSVFVAAHTSAGKTVV--AEYAFALATKH-CTRAVYTAPIKTISNQKYRDFSGKF--- 467 (1379)
Q Consensus 398 pFeL~~~Q~eAI~~L----~~g~sVlV~ApTGSGKTlv--ae~aI~~~l~~-~~raIylsPtkaLsnQk~~~~~~~f--- 467 (1379)
+-+|++||.+.+..| ++|-+.|++-..|-|||+- +.++.+...+. .+.-+|++|.-.|.| |.++|++..
T Consensus 165 ~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~N-W~~Ef~rf~P~l 243 (971)
T KOG0385|consen 165 GGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDN-WMNEFKRFTPSL 243 (971)
T ss_pred CCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHH-HHHHHHHhCCCc
Confidence 456999999998876 6788999999999999974 33333333222 467899999888865 778888776
Q ss_pred cEEEEecCccc----------CCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccc
Q 039491 468 DVGLLTGDVSL----------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHI 537 (1379)
Q Consensus 468 ~VglltGdv~i----------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~v 537 (1379)
++-++.||-.- ....+|+|+|+|+...-- ....--.+.++||||+|++.+. -..+..++..+.. .
T Consensus 244 ~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk--~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~f~~-~ 318 (971)
T KOG0385|consen 244 NVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK--SFLKKFNWRYLVIDEAHRIKNE--KSKLSKILREFKT-D 318 (971)
T ss_pred ceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH--HHHhcCCceEEEechhhhhcch--hhHHHHHHHHhcc-c
Confidence 78889998641 235799999999885431 1111235789999999999875 3334455555543 4
Q ss_pred eEEEecccC-CCh-------------------HHHHHHHhhhcC-CcEEEEc---cCCCC--------------cCceEE
Q 039491 538 NIVLLSATV-PNT-------------------VEFADWIGRTKQ-KKIRVTG---TTKRP--------------VPLEHC 579 (1379)
Q Consensus 538 qiIlLSATv-pN~-------------------~efa~wl~~~~~-~~i~vi~---t~~Rp--------------vpLe~~ 579 (1379)
.-+++|.|+ .|. .+|.+|+..+.. +.-.++. .--+| .|....
T Consensus 319 nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~ 398 (971)
T KOG0385|consen 319 NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKEL 398 (971)
T ss_pred ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCccee
Confidence 568888883 232 346666654210 0000000 00011 111111
Q ss_pred EeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCC----CCCCCcccccccccCCCCCCCCCCc--ccccc
Q 039491 580 LYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYA----GASSPRDGARAQKREHPNRGKQNKH--SVVGI 653 (1379)
Q Consensus 580 l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~gr~~~~--~~~~~ 653 (1379)
..+.+ +.. ....|.++ +..+............. +....-|.+-..++.......+... ..+..
T Consensus 399 ~iyvg----ms~----mQkk~Y~~---iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv 467 (971)
T KOG0385|consen 399 IIYVG----MSS----MQKKWYKA---ILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLV 467 (971)
T ss_pred eEecc----chH----HHHHHHHH---HHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHH
Confidence 11111 000 00111111 11110000000000000 0000000000000000000000000 00000
Q ss_pred ccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCC
Q 039491 654 KNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGS 733 (1379)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~e 733 (1379)
..+| .-..+..|+..|... +.+|+||..--..-+-+-+++.-.++...
T Consensus 468 -------~nSG----Km~vLDkLL~~Lk~~-GhRVLIFSQmt~mLDILeDyc~~R~y~yc-------------------- 515 (971)
T KOG0385|consen 468 -------TNSG----KMLVLDKLLPKLKEQ-GHRVLIFSQMTRMLDILEDYCMLRGYEYC-------------------- 515 (971)
T ss_pred -------hcCc----ceehHHHHHHHHHhC-CCeEEEeHHHHHHHHHHHHHHHhcCceeE--------------------
Confidence 0111 223456677777665 58999998666655555555433333221
Q ss_pred CCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCC---CeeEEEecccccccCCCCCceEEEccccccCCccccc
Q 039491 734 DRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRG---VVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQ 810 (1379)
Q Consensus 734 dr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G---~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rp 810 (1379)
-+-|.++.++|...++.|... ..-.|++|-+.+.|||+-+.++||. ||. .
T Consensus 516 -------------------RiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIl----yDS----D 568 (971)
T KOG0385|consen 516 -------------------RLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVIL----YDS----D 568 (971)
T ss_pred -------------------eecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEE----ecC----C
Confidence 267899999999999999764 3457889999999999999999998 999 8
Q ss_pred CCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHH
Q 039491 811 LLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKH 850 (1379)
Q Consensus 811 ls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~ 850 (1379)
++|..=.|..-||.|-|+...-.||-+++++.-+...+.+
T Consensus 569 WNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveR 608 (971)
T KOG0385|consen 569 WNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVER 608 (971)
T ss_pred CCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHH
Confidence 9999999999999999999899999999887534444433
No 135
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.42 E-value=9.9e-13 Score=132.35 Aligned_cols=116 Identities=32% Similarity=0.421 Sum_probs=97.8
Q ss_pred HHHHHHHHHhC--CCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccc
Q 039491 673 WLTLINKLSKK--SLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRG 750 (1379)
Q Consensus 673 ~~~Li~~L~~~--~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rG 750 (1379)
...+.+.+.+. ...++||||.++..++.+++.|... ..+
T Consensus 14 ~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~---------------------------------------~~~ 54 (131)
T cd00079 14 LEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKP---------------------------------------GIK 54 (131)
T ss_pred HHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhc---------------------------------------CCc
Confidence 33444444433 3689999999999999999998652 124
Q ss_pred eEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCC
Q 039491 751 IAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDK 830 (1379)
Q Consensus 751 IavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~ 830 (1379)
+.++||++++.+|..+...|++|..++|++|.++++|+|+|..++||. ++. +.+..+|.|++||+||.|.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~----~~~----~~~~~~~~Q~~GR~~R~~~-- 124 (131)
T cd00079 55 VAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVIN----YDL----PWSPSSYLQRIGRAGRAGQ-- 124 (131)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEE----eCC----CCCHHHheecccccccCCC--
Confidence 788999999999999999999999999999999999999999988887 677 8899999999999999996
Q ss_pred cEEEEEE
Q 039491 831 IGTVVVL 837 (1379)
Q Consensus 831 ~G~vIil 837 (1379)
.|.++++
T Consensus 125 ~~~~~~~ 131 (131)
T cd00079 125 KGTAILL 131 (131)
T ss_pred CceEEeC
Confidence 4777763
No 136
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.42 E-value=3e-11 Score=149.77 Aligned_cols=123 Identities=17% Similarity=0.137 Sum_probs=101.5
Q ss_pred hccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-----c
Q 039491 394 ALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-----D 468 (1379)
Q Consensus 394 a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-----~ 468 (1379)
.+.++..+++.|.-+.-.+.+|+ ++.+.||.|||+++.+|++.....|..+.+++|+--||.|-++.+...| .
T Consensus 72 ~R~lg~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLs 149 (764)
T PRK12326 72 ERTLGLRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLT 149 (764)
T ss_pred HHHcCCCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCE
Confidence 34678888899999999999885 7799999999999999999888899999999999999999999988876 7
Q ss_pred EEEEecCcccC-----CCCceeeecHH-----HHHHHHhc--CcccCCCccEEEEeccCCCC
Q 039491 469 VGLLTGDVSLR-----PEASCLIMTTE-----ILRSMLYR--GADIIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 469 VglltGdv~in-----~~a~IlV~TpE-----iL~smL~~--~~~~l~~v~lVI~DEaH~l~ 518 (1379)
||+++++.+.. -.++|+++|.. .|++.+.. +....+.+.++|+|||+.+.
T Consensus 150 vg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 150 VGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred EEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 99998887632 25799999984 45554432 23355789999999999764
No 137
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.42 E-value=4.4e-13 Score=124.06 Aligned_cols=73 Identities=32% Similarity=0.472 Sum_probs=69.5
Q ss_pred hccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCC
Q 039491 747 LRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRR 826 (1379)
Q Consensus 747 L~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRr 826 (1379)
....++++||++++.+|+.+++.|++|..+|||||+++++|||+|.+++||. |+. +.++.+|.|++||+||.
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~----~~~----~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF----YDP----PWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE----SSS----ESSHHHHHHHHTTSSTT
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc----ccc----CCCHHHHHHHhhcCCCC
Confidence 4556899999999999999999999999999999999999999999999999 888 99999999999999998
Q ss_pred C
Q 039491 827 G 827 (1379)
Q Consensus 827 G 827 (1379)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
No 138
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.36 E-value=1e-10 Score=148.36 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=96.7
Q ss_pred cCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-----cEE
Q 039491 396 DFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-----DVG 470 (1379)
Q Consensus 396 ~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-----~Vg 470 (1379)
..+..+++.|.-.--.|.+| -++.+.||.|||++|.+|++.....|..+-+++|+..||.|-+..+...| .||
T Consensus 78 ~lGm~~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~ 155 (913)
T PRK13103 78 VMGMRHFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVG 155 (913)
T ss_pred HhCCCcchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEE
Confidence 45656678888776667666 48999999999999999999988899999999999999999999998877 789
Q ss_pred EEecCcccCC-----CCceeeecHHHH-----HHHHhc--CcccCCCccEEEEeccCCCC
Q 039491 471 LLTGDVSLRP-----EASCLIMTTEIL-----RSMLYR--GADIIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 471 lltGdv~in~-----~a~IlV~TpEiL-----~smL~~--~~~~l~~v~lVI~DEaH~l~ 518 (1379)
+++|+.+... .++|+++|...| ++.+.- .....+.+.++|+||+|.++
T Consensus 156 ~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 156 IVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred EECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 9988775321 389999999764 433221 22245889999999999875
No 139
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.31 E-value=7.5e-11 Score=137.33 Aligned_cols=367 Identities=16% Similarity=0.135 Sum_probs=206.0
Q ss_pred CCHHHHHHHHH-HHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc----cEEEEecC
Q 039491 401 LDNFQKEAIYY-LENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF----DVGLLTGD 475 (1379)
Q Consensus 401 L~~~Q~eAI~~-L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f----~VglltGd 475 (1379)
|-|||++.+.. |.+|..+|++-..|-|||+-| ++|+...+..--.++++|- .|---|.+.+...+ .+-++.+.
T Consensus 199 LlPFQreGv~faL~RgGR~llADeMGLGKTiQA-laIA~yyraEwplliVcPA-svrftWa~al~r~lps~~pi~vv~~~ 276 (689)
T KOG1000|consen 199 LLPFQREGVIFALERGGRILLADEMGLGKTIQA-LAIARYYRAEWPLLIVCPA-SVRFTWAKALNRFLPSIHPIFVVDKS 276 (689)
T ss_pred hCchhhhhHHHHHhcCCeEEEecccccchHHHH-HHHHHHHhhcCcEEEEecH-HHhHHHHHHHHHhcccccceEEEecc
Confidence 44779999877 578889999999999999876 5777777777779999996 44556777777766 55566554
Q ss_pred cccCC----CCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEeccc--CCCh
Q 039491 476 VSLRP----EASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSAT--VPNT 549 (1379)
Q Consensus 476 v~in~----~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSAT--vpN~ 549 (1379)
...-+ -..|.|++++.+..+-. -..-+.+.+||+||+|++.+.. ......+.-.+..-.++|+||.| ++.+
T Consensus 277 ~D~~~~~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~akhvILLSGTPavSRP 353 (689)
T KOG1000|consen 277 SDPLPDVCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAKHVILLSGTPAVSRP 353 (689)
T ss_pred cCCccccccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhhheEEecCCcccCCc
Confidence 44322 25789999998754321 1123458999999999998742 33344444445555689999999 4444
Q ss_pred HHHHHHHhhhcCCc---EE---EEccCCCCcCceEEEe-----------------------------ecC-ceeeeccCc
Q 039491 550 VEFADWIGRTKQKK---IR---VTGTTKRPVPLEHCLY-----------------------------YSG-EFYKVCENE 593 (1379)
Q Consensus 550 ~efa~wl~~~~~~~---i~---vi~t~~RpvpLe~~l~-----------------------------~~~-~l~~i~d~~ 593 (1379)
.|+..-|......- .+ ....+.+.++.-.-+- +.+ ....++-.+
T Consensus 354 ~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~~g 433 (689)
T KOG1000|consen 354 SELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYVSGG 433 (689)
T ss_pred hhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEcCC
Confidence 44333332221100 00 0000111111000000 000 000000011
Q ss_pred ccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHH
Q 039491 594 AFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIW 673 (1379)
Q Consensus 594 ~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1379)
... ..+.+......+ .... .+.. ++.....-.=...+ ..++
T Consensus 434 r~d----a~~~~lv~~a~~-~t~~------~~~e----------------~~~~~l~l~y~~tg------------iaK~ 474 (689)
T KOG1000|consen 434 RID----ARMDDLVKAAAD-YTKV------NSME----------------RKHESLLLFYSLTG------------IAKA 474 (689)
T ss_pred ccc----hHHHHHHHHhhh-cchh------hhhh----------------hhhHHHHHHHHHhc------------cccc
Confidence 000 011111111110 0000 0000 00000000000000 0111
Q ss_pred HHHHHH------HHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhh
Q 039491 674 LTLINK------LSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLL 747 (1379)
Q Consensus 674 ~~Li~~------L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL 747 (1379)
..+.++ +......+.+||+.-...-+.+-..+...++..
T Consensus 475 ~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~----------------------------------- 519 (689)
T KOG1000|consen 475 AAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGS----------------------------------- 519 (689)
T ss_pred HHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCe-----------------------------------
Confidence 222222 334556789999998887777766665533322
Q ss_pred ccceEEecCCCChHHHHHHHHHhcCC-CeeE-EEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCC
Q 039491 748 RRGIAIHHAGLLPIVKEVIEMLFCRG-VVKV-LFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGR 825 (1379)
Q Consensus 748 ~rGIavhHggL~~~~Re~Ve~lF~~G-~ikV-LVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGR 825 (1379)
--+-|..++..|+..-+.|+.. .++| +++-....+|+++.+..+|+- -.. +++|+-.+|.--||.|
T Consensus 520 ----IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVF----aEL----~wnPgvLlQAEDRaHR 587 (689)
T KOG1000|consen 520 ----IRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVF----AEL----HWNPGVLLQAEDRAHR 587 (689)
T ss_pred ----EEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEE----EEe----cCCCceEEechhhhhh
Confidence 1257889999999999999864 5554 456677889999987766543 223 6789999999999999
Q ss_pred CCCCCcEEEEEEecCCCCCHHHHHHHHhcCCCcc
Q 039491 826 RGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRL 859 (1379)
Q Consensus 826 rG~d~~G~vIil~~~~~~~~~~l~~li~g~~~~L 859 (1379)
.|+...-.+++++.... -.+.+..++..+...|
T Consensus 588 iGQkssV~v~ylvAKgT-~Ddy~Wp~l~~KL~vl 620 (689)
T KOG1000|consen 588 IGQKSSVFVQYLVAKGT-ADDYMWPMLQQKLDVL 620 (689)
T ss_pred ccccceeeEEEEEecCc-hHHHHHHHHHHHHHHH
Confidence 99987666677776654 3345555555444333
No 140
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.28 E-value=6e-10 Score=136.33 Aligned_cols=376 Identities=18% Similarity=0.171 Sum_probs=213.2
Q ss_pred CCHHHHHHHHHH----HCCCcEEEEcCCCccHHH--HHHHHHHHHH-hcCCcEEEecchHHHHHHHHHHHhccc---cEE
Q 039491 401 LDNFQKEAIYYL----ENGDSVFVAAHTSAGKTV--VAEYAFALAT-KHCTRAVYTAPIKTISNQKYRDFSGKF---DVG 470 (1379)
Q Consensus 401 L~~~Q~eAI~~L----~~g~sVlV~ApTGSGKTl--vae~aI~~~l-~~~~raIylsPtkaLsnQk~~~~~~~f---~Vg 470 (1379)
|.+||++.+..| .++.--|+.-..|-|||. |+.++.+..- +--..+||+||. .|..||..+|...+ +|.
T Consensus 206 Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~~rv~ 284 (923)
T KOG0387|consen 206 LFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPPFRVF 284 (923)
T ss_pred hhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcceEEE
Confidence 679999999887 345668999999999994 3333333322 334789999995 77899999999988 788
Q ss_pred EEecCcc--------------------cCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHH
Q 039491 471 LLTGDVS--------------------LRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVI 530 (1379)
Q Consensus 471 lltGdv~--------------------in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii 530 (1379)
+++|..+ ...+..|+|+|++.++-+ .....-..++++|+||.|+|.+.. ......+
T Consensus 285 ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpn--s~islac 360 (923)
T KOG0387|consen 285 ILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPN--SKISLAC 360 (923)
T ss_pred EEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCc--cHHHHHH
Confidence 8877554 123467999999988643 122223468899999999998763 3344444
Q ss_pred HHcCccceEEEeccc-CCCh-HHHHHHHhhhcCCcE------------EEEccCCC-CcCce------------------
Q 039491 531 IMLPRHINIVLLSAT-VPNT-VEFADWIGRTKQKKI------------RVTGTTKR-PVPLE------------------ 577 (1379)
Q Consensus 531 ~~Lp~~vqiIlLSAT-vpN~-~efa~wl~~~~~~~i------------~vi~t~~R-pvpLe------------------ 577 (1379)
..++. ++.|.||.| +.|. .|+.+.+.-...+.. .+-...+. ..|++
T Consensus 361 kki~T-~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~Py 439 (923)
T KOG0387|consen 361 KKIRT-VHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPY 439 (923)
T ss_pred Hhccc-cceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 45554 566788888 4444 465544443322110 00000000 00000
Q ss_pred ----------EEEeec-CceeeeccCcccchhhHHHHHHH--HHhhccccccCCCCCCCCCCCCccccccccc-----CC
Q 039491 578 ----------HCLYYS-GEFYKVCENEAFIPQGWKAAKDA--YKRKNLSAASGATGSYAGASSPRDGARAQKR-----EH 639 (1379)
Q Consensus 578 ----------~~l~~~-~~l~~i~d~~~f~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 639 (1379)
+...+. .++...+.-......-|...... +..-.+..... ..+....++.+....- +.
T Consensus 440 lLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~----l~Gi~iLrkICnHPdll~~~~~~ 515 (923)
T KOG0387|consen 440 LLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNC----LSGIDILRKICNHPDLLDRRDED 515 (923)
T ss_pred HHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccc----eechHHHHhhcCCcccccCcccc
Confidence 000000 01111111000000111111000 00000000000 0000000111100000 00
Q ss_pred CCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhc-CCCCCchhhhH
Q 039491 640 PNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSG-IDLTSSSEKSE 718 (1379)
Q Consensus 640 ~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~-~~l~~~~ek~~ 718 (1379)
...+.+- .+....+| ....+..++....+.+ .++++|..|+..-+.+-..|.. .++..
T Consensus 516 ~~~~~D~----------~g~~k~sG----Km~vl~~ll~~W~kqg-~rvllFsqs~~mLdilE~fL~~~~~ysy------ 574 (923)
T KOG0387|consen 516 EKQGPDY----------EGDPKRSG----KMKVLAKLLKDWKKQG-DRVLLFSQSRQMLDILESFLRRAKGYSY------ 574 (923)
T ss_pred cccCCCc----------CCChhhcc----hHHHHHHHHHHHhhCC-CEEEEehhHHHHHHHHHHHHHhcCCceE------
Confidence 0000000 00000111 2345556666666554 6999999999988888777762 33322
Q ss_pred HHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCee--EEEecccccccCCCCCceEE
Q 039491 719 IRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVK--VLFSTETFAMGVNAPARTVV 796 (1379)
Q Consensus 719 i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ik--VLVATetla~GINiPa~tvV 796 (1379)
.-.-|..+...|......|.++... .|++|-+...|+|+-..+-|
T Consensus 575 ---------------------------------lRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRV 621 (923)
T KOG0387|consen 575 ---------------------------------LRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRV 621 (923)
T ss_pred ---------------------------------EEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceE
Confidence 1256777788899999999987543 57799999999999877766
Q ss_pred EccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHH
Q 039491 797 FDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDL 848 (1379)
Q Consensus 797 I~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l 848 (1379)
|- ||+ .++|+.=.|..-||=|.|+...-+||-+++...-++..+
T Consensus 622 II----fDP----dWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY 665 (923)
T KOG0387|consen 622 II----FDP----DWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIY 665 (923)
T ss_pred EE----ECC----CCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHH
Confidence 66 999 899999999999999999987677787776654344433
No 141
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.25 E-value=3.2e-10 Score=143.77 Aligned_cols=384 Identities=20% Similarity=0.167 Sum_probs=218.2
Q ss_pred CCCCCHHHHHHHHHH----HCCCcEEEEcCCCccHHH---HHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc--c
Q 039491 398 PFELDNFQKEAIYYL----ENGDSVFVAAHTSAGKTV---VAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF--D 468 (1379)
Q Consensus 398 pFeL~~~Q~eAI~~L----~~g~sVlV~ApTGSGKTl---vae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f--~ 468 (1379)
+-+|+.||.+.+..+ .++.|+|++-..|-|||+ +|+.-+.....-.+-.|+++|.-.+.+ |.++|.... +
T Consensus 368 g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~-W~~ef~~w~~mn 446 (1373)
T KOG0384|consen 368 GNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITA-WEREFETWTDMN 446 (1373)
T ss_pred cchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHH-HHHHHHHHhhhc
Confidence 457999999998776 578999999999999996 455555555555566899999877654 556666555 8
Q ss_pred EEEEecCccc-----------CC-----CCceeeecHHHHHHHHhcCcccCC--CccEEEEeccCCCCCccchhHHHHHH
Q 039491 469 VGLLTGDVSL-----------RP-----EASCLIMTTEILRSMLYRGADIIR--DIEWVIFDEVHYVNDIERGVVWEEVI 530 (1379)
Q Consensus 469 VglltGdv~i-----------n~-----~a~IlV~TpEiL~smL~~~~~~l~--~v~lVI~DEaH~l~d~~rG~v~eeii 530 (1379)
+-+++|+..- .. ..+++++|.|++..-. ..++ .+.++++||||++-+.+ ...|+. +
T Consensus 447 ~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk----~~L~~i~w~~~~vDeahrLkN~~-~~l~~~-l 520 (1373)
T KOG0384|consen 447 VIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK----AELSKIPWRYLLVDEAHRLKNDE-SKLYES-L 520 (1373)
T ss_pred eeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH----hhhccCCcceeeecHHhhcCchH-HHHHHH-H
Confidence 8888887641 12 4689999999885422 2233 46789999999998642 444554 3
Q ss_pred HHcCccceEEEeccc-CCCh-HHHHHHHhhhcCCcEEEEcc---CC---------------CCcCc-------eEEEeec
Q 039491 531 IMLPRHINIVLLSAT-VPNT-VEFADWIGRTKQKKIRVTGT---TK---------------RPVPL-------EHCLYYS 583 (1379)
Q Consensus 531 ~~Lp~~vqiIlLSAT-vpN~-~efa~wl~~~~~~~i~vi~t---~~---------------RpvpL-------e~~l~~~ 583 (1379)
..+.- -.-+++|.| +.|. .|+...+.-.+......... .. +|.-| +..+-+.
T Consensus 521 ~~f~~-~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k 599 (1373)
T KOG0384|consen 521 NQFKM-NHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPK 599 (1373)
T ss_pred HHhcc-cceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCC
Confidence 33322 345888898 4455 47766665433321110000 00 00000 0000000
Q ss_pred CceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCC------cccccccccCC--CC---CCCCCCccccc
Q 039491 584 GEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSP------RDGARAQKREH--PN---RGKQNKHSVVG 652 (1379)
Q Consensus 584 ~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--~~---~gr~~~~~~~~ 652 (1379)
..-..-++-... ...|.+ .|..++-..... +........ .+.+-...+.. +. .+..+..+...
T Consensus 600 ~E~IlrVels~l-Qk~yYk---~ILtkN~~~LtK--G~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~ 673 (1373)
T KOG0384|consen 600 EETILRVELSDL-QKQYYK---AILTKNFSALTK--GAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDE 673 (1373)
T ss_pred cceEEEeehhHH-HHHHHH---HHHHhhHHHHhc--cCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHH
Confidence 000000000000 000100 010000000000 000000000 00000000000 00 00000000000
Q ss_pred cccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccC
Q 039491 653 IKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKG 732 (1379)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~ 732 (1379)
. ..+-.+ .+| ..-.+..|+-.|+. ++++|+||..-.+.-+-++++|...+++...
T Consensus 674 ~-L~~lI~-sSG----KlVLLDKLL~rLk~-~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQR------------------ 728 (1373)
T KOG0384|consen 674 A-LQALIQ-SSG----KLVLLDKLLPRLKE-GGHRVLIFSQMVRMLDILAEYLSLRGYPFQR------------------ 728 (1373)
T ss_pred H-HHHHHH-hcC----cEEeHHHHHHHHhc-CCceEEEhHHHHHHHHHHHHHHHHcCCccee------------------
Confidence 0 000000 000 01123334444443 4589999999999999999999887777543
Q ss_pred CCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcC---CCeeEEEecccccccCCCCCceEEEccccccCCcccc
Q 039491 733 SDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCR---GVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFR 809 (1379)
Q Consensus 733 edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~---G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~r 809 (1379)
+-|++.-..|+..+.-|.. ...-.|.||-+.+.|||+-+.+.||- ||.
T Consensus 729 ---------------------LDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVII----FDS---- 779 (1373)
T KOG0384|consen 729 ---------------------LDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVII----FDS---- 779 (1373)
T ss_pred ---------------------ccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEE----eCC----
Confidence 5788899999999999985 46678999999999999987776666 999
Q ss_pred cCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHH
Q 039491 810 QLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLK 849 (1379)
Q Consensus 810 pls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~ 849 (1379)
.++|..=+|..-||.|-|+...-.||-+++.+..+...+.
T Consensus 780 DWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilE 819 (1373)
T KOG0384|consen 780 DWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILE 819 (1373)
T ss_pred CCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHH
Confidence 9999999999999999999999999999987764555443
No 142
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.23 E-value=4.4e-09 Score=135.33 Aligned_cols=63 Identities=21% Similarity=0.120 Sum_probs=52.4
Q ss_pred CCCCCHHHHHHHHHH---HC------CCcEEEEcCCCccHHHHHHHHHHH-HHhcCCcEEEecchHHHHHHHH
Q 039491 398 PFELDNFQKEAIYYL---EN------GDSVFVAAHTSAGKTVVAEYAFAL-ATKHCTRAVYTAPIKTISNQKY 460 (1379)
Q Consensus 398 pFeL~~~Q~eAI~~L---~~------g~sVlV~ApTGSGKTlvae~aI~~-~l~~~~raIylsPtkaLsnQk~ 460 (1379)
+|+.++-|.+-+..+ .. ++.++|-||||+|||++|++|.+. +...+.++||-+.|++|-.|.+
T Consensus 23 ~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 23 GFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLV 95 (697)
T ss_pred CCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 489999999955443 33 367889999999999999999765 4458899999999999999975
No 143
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.22 E-value=1.6e-09 Score=135.95 Aligned_cols=383 Identities=16% Similarity=0.119 Sum_probs=215.3
Q ss_pred CCCHHHHHHHHHHHC---C-------CcEEEEcCCCccHHHHHHHHHHHHHhc--C-----CcEEEecchHHHHHHHHHH
Q 039491 400 ELDNFQKEAIYYLEN---G-------DSVFVAAHTSAGKTVVAEYAFALATKH--C-----TRAVYTAPIKTISNQKYRD 462 (1379)
Q Consensus 400 eL~~~Q~eAI~~L~~---g-------~sVlV~ApTGSGKTlvae~aI~~~l~~--~-----~raIylsPtkaLsnQk~~~ 462 (1379)
.++|+|++.+..+-+ | ...+++-..|+|||+-..-.|...++. . .++||++| +.|.+-|+++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P-~sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAP-SSLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEcc-HHHHHHHHHH
Confidence 478999999988622 2 236777788999998655555555543 3 68999999 5899999999
Q ss_pred Hhccc---cEE--EEecCccc--------------CCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccch
Q 039491 463 FSGKF---DVG--LLTGDVSL--------------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERG 523 (1379)
Q Consensus 463 ~~~~f---~Vg--lltGdv~i--------------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG 523 (1379)
|.+.. ++. .+.|...- .-...++|-++|.++..... .....+++||+||.|.+.+.. .
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~~-s 393 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNSD-S 393 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccchh-h
Confidence 99876 222 23333220 11246788899988754432 356789999999999998642 3
Q ss_pred hHHHHHHHHcCccceEEEecccC-CCh-HHHHHHHhhhcCCcEEEEcc----------CCCCcC--------------c-
Q 039491 524 VVWEEVIIMLPRHINIVLLSATV-PNT-VEFADWIGRTKQKKIRVTGT----------TKRPVP--------------L- 576 (1379)
Q Consensus 524 ~v~eeii~~Lp~~vqiIlLSATv-pN~-~efa~wl~~~~~~~i~vi~t----------~~Rpvp--------------L- 576 (1379)
..|. .+..+. ..+-|+||.|+ .|. .|+.+.++-...+-..-... ..|..+ |
T Consensus 394 ~~~k-aL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~ 471 (776)
T KOG0390|consen 394 LTLK-ALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELR 471 (776)
T ss_pred HHHH-HHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHH
Confidence 3333 444443 24679999994 343 57777666543321111100 000000 0
Q ss_pred ---eEEEeec-----------Cceeeec-cCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCC
Q 039491 577 ---EHCLYYS-----------GEFYKVC-ENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPN 641 (1379)
Q Consensus 577 ---e~~l~~~-----------~~l~~i~-d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (1379)
.+++... ..-|.++ ........-|.+..+.. ..
T Consensus 472 ~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~------------------------------- 519 (776)
T KOG0390|consen 472 ELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KM------------------------------- 519 (776)
T ss_pred HHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hh-------------------------------
Confidence 0000000 0000000 00000011111111000 00
Q ss_pred CCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEE-eCChhHH--HHH-HHHhhcCCCCCchhhh
Q 039491 642 RGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIF-CFSKNHC--DKL-ADGMSGIDLTSSSEKS 717 (1379)
Q Consensus 642 ~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVF-v~Srk~c--e~l-A~~L~~~~l~~~~ek~ 717 (1379)
.........++-.|++.-..|.+++ +.-.+.. ... +..+....+.......
T Consensus 520 -------------------------~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 574 (776)
T KOG0390|consen 520 -------------------------RTLKGYALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDG 574 (776)
T ss_pred -------------------------hhhhcchhhHHHHHHHHhcCHHhhcccccccccccccChHhhhcccccccccccc
Confidence 0000112233444555556788885 2222211 111 1111111111111111
Q ss_pred HHHHHH---HHHhhhccCC--C---------CCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCC--CeeE-EEe
Q 039491 718 EIRVFC---DKAFSRLKGS--D---------RNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRG--VVKV-LFS 780 (1379)
Q Consensus 718 ~i~~~~---~~~~~~L~~e--d---------r~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G--~ikV-LVA 780 (1379)
.-..++ ...+...... + ..+..+..+.....+.+..+||.|+..+|+.+...|.+- ..+| |.+
T Consensus 575 ~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlS 654 (776)
T KOG0390|consen 575 SKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLS 654 (776)
T ss_pred hhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEe
Confidence 101111 1111111100 0 122333445555567788899999999999999999873 3355 446
Q ss_pred cccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHHh
Q 039491 781 TETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIV 853 (1379)
Q Consensus 781 Tetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li~ 853 (1379)
|-+.+.|||+=+.+-||. ||. +++|+.=.|.++||=|.|+...-++|-+.....+++..+++-..
T Consensus 655 sKAgg~GinLiGAsRlil----~D~----dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~ 719 (776)
T KOG0390|consen 655 SKAGGEGLNLIGASRLIL----FDP----DWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTH 719 (776)
T ss_pred cccccCceeecccceEEE----eCC----CCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHH
Confidence 677889999998888888 999 99999999999999999999888999888888878888776554
No 144
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.20 E-value=7.2e-10 Score=141.60 Aligned_cols=147 Identities=20% Similarity=0.222 Sum_probs=96.5
Q ss_pred CHHHHHHHHHHHC--------CCcEEEEcCCCccHHHHHHHHHHHHH---hcCCcEEEecchHHHHHHHHHHHhccc---
Q 039491 402 DNFQKEAIYYLEN--------GDSVFVAAHTSAGKTVVAEYAFALAT---KHCTRAVYTAPIKTISNQKYRDFSGKF--- 467 (1379)
Q Consensus 402 ~~~Q~eAI~~L~~--------g~sVlV~ApTGSGKTlvae~aI~~~l---~~~~raIylsPtkaLsnQk~~~~~~~f--- 467 (1379)
..||-+|+..+.. |--++-.|.||+|||++=. -|..++ ..|.|..|-.-.|.|--|.-..+++..
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNA-RImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~ 488 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANA-RAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLS 488 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHH-HHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCC
Confidence 4799999988632 3335667999999998522 244444 345688999999999999888888765
Q ss_pred --cEEEEecCccc----------------------------------------------------CC------CCceeee
Q 039491 468 --DVGLLTGDVSL----------------------------------------------------RP------EASCLIM 487 (1379)
Q Consensus 468 --~VglltGdv~i----------------------------------------------------n~------~a~IlV~ 487 (1379)
+.+++.|+..+ ++ .++++|+
T Consensus 489 ~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~ 568 (1110)
T TIGR02562 489 DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVC 568 (1110)
T ss_pred ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEe
Confidence 56666663210 00 1579999
Q ss_pred cHHHHHHHH--hcC-cccCCC----ccEEEEeccCCCCCccchhHHHHHHHHc-CccceEEEecccCCChH
Q 039491 488 TTEILRSML--YRG-ADIIRD----IEWVIFDEVHYVNDIERGVVWEEVIIML-PRHINIVLLSATVPNTV 550 (1379)
Q Consensus 488 TpEiL~smL--~~~-~~~l~~----v~lVI~DEaH~l~d~~rG~v~eeii~~L-p~~vqiIlLSATvpN~~ 550 (1379)
|+..+.... .++ ...++- -+.|||||+|-......+. +..++..+ --.+++++||||+|...
T Consensus 569 TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~-L~rlL~w~~~lG~~VlLmSATLP~~l 638 (1110)
T TIGR02562 569 TIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPA-LLRLVQLAGLLGSRVLLSSATLPPAL 638 (1110)
T ss_pred cHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHH-HHHHHHHHHHcCCCEEEEeCCCCHHH
Confidence 998776654 232 222221 2579999999775433333 33333322 23578999999999764
No 145
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.20 E-value=2.9e-09 Score=137.04 Aligned_cols=70 Identities=17% Similarity=0.169 Sum_probs=58.3
Q ss_pred CCCCCCHHHHHHHHHH----HCCCcEEEEcCCCccHHHHHHHHHHHHH-hcCCcEEEecchHHHHHHHHHHHhcc
Q 039491 397 FPFELDNFQKEAIYYL----ENGDSVFVAAHTSAGKTVVAEYAFALAT-KHCTRAVYTAPIKTISNQKYRDFSGK 466 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~L----~~g~sVlV~ApTGSGKTlvae~aI~~~l-~~~~raIylsPtkaLsnQk~~~~~~~ 466 (1379)
-+|++++.|.+.+..+ ..+..+++.||||+|||+.++.+++... ..+.+++|.++|++|-.|.+++....
T Consensus 12 ~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 12 PGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhcch
Confidence 4678999999988664 4566699999999999999999877665 45689999999999999988766553
No 146
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.19 E-value=4.3e-10 Score=142.45 Aligned_cols=117 Identities=14% Similarity=0.062 Sum_probs=91.4
Q ss_pred CCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc---cEEEEecCcc-----------cCCCCceeeecH
Q 039491 424 TSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF---DVGLLTGDVS-----------LRPEASCLIMTT 489 (1379)
Q Consensus 424 TGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f---~VglltGdv~-----------in~~a~IlV~Tp 489 (1379)
+|||||-+|.-+|...+..|..+|+++|..+|..|..+.|++.| .|.+++++.+ .+.++.|+|+|-
T Consensus 169 ~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtR 248 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTR 248 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 59999999999999999999999999999999999999999999 5888998776 245678999995
Q ss_pred HHHHHHHhcCcccCCCccEEEEeccCCCCCc-cch--hHHHHHHHHc--CccceEEEecccCC
Q 039491 490 EILRSMLYRGADIIRDIEWVIFDEVHYVNDI-ERG--VVWEEVIIML--PRHINIVLLSATVP 547 (1379)
Q Consensus 490 EiL~smL~~~~~~l~~v~lVI~DEaH~l~d~-~rG--~v~eeii~~L--p~~vqiIlLSATvp 547 (1379)
.-+. ..+.++++||+||=|--.-. +++ ....++..+. -.++.+|+-|||.+
T Consensus 249 SAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 249 SAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred eeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 4332 35789999999999954321 112 2234444332 24789999999954
No 147
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.15 E-value=9.8e-11 Score=107.88 Aligned_cols=72 Identities=35% Similarity=0.473 Sum_probs=67.1
Q ss_pred ccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCC
Q 039491 748 RRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRG 827 (1379)
Q Consensus 748 ~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG 827 (1379)
...+.++||++++.+|..++..|++|..+|||+|+++++|+|+|.++.||. ++. +.++..|.||+||++|.|
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~----~~~----~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVII----YDL----PWSPASYIQRIGRAGRAG 82 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEE----eCC----CCCHHHHHHhhcccccCC
Confidence 456889999999999999999999999999999999999999998888887 777 899999999999999986
No 148
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.15 E-value=1.6e-10 Score=118.04 Aligned_cols=133 Identities=19% Similarity=0.271 Sum_probs=84.1
Q ss_pred CCCcEEEEcCCCccHHHH-HHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCc--ccCCCCceeeecHH
Q 039491 414 NGDSVFVAAHTSAGKTVV-AEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDV--SLRPEASCLIMTTE 490 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlv-ae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv--~in~~a~IlV~TpE 490 (1379)
+|+-.++-.|+|||||.- ---.+.++++.+.|+|++.|||.++...++.++..- +..-+.-. .......|-|||..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~-~~~~t~~~~~~~~g~~~i~vMc~a 81 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLP-VRFHTNARMRTHFGSSIIDVMCHA 81 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSS-EEEESTTSS----SSSSEEEEEHH
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCC-cccCceeeeccccCCCcccccccH
Confidence 456678999999999973 333456678899999999999999999999998653 33222211 23455678899999
Q ss_pred HHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc--CccceEEEecccCCChH
Q 039491 491 ILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML--PRHINIVLLSATVPNTV 550 (1379)
Q Consensus 491 iL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L--p~~vqiIlLSATvpN~~ 550 (1379)
.+...+.++ ....++++||+||||...-. .....-.+..+ ...+++|+||||.|-..
T Consensus 82 t~~~~~~~p-~~~~~yd~II~DEcH~~Dp~--sIA~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 82 TYGHFLLNP-CRLKNYDVIIMDECHFTDPT--SIAARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp HHHHHHHTS-SCTTS-SEEEECTTT--SHH--HHHHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred HHHHHhcCc-ccccCccEEEEeccccCCHH--HHhhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 988877664 45689999999999986422 11111122222 12468999999988765
No 149
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.10 E-value=7.7e-09 Score=130.28 Aligned_cols=122 Identities=14% Similarity=0.157 Sum_probs=89.5
Q ss_pred ccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-----cE
Q 039491 395 LDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-----DV 469 (1379)
Q Consensus 395 ~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-----~V 469 (1379)
+.++..+++.|.-.--.|..|+ +.-+.||-|||++|.+|++...-.|..|-+++..--||.-=+..+...| .|
T Consensus 73 R~lG~r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy~fLGLsv 150 (925)
T PRK12903 73 RVLGKRPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSV 150 (925)
T ss_pred HHhCCCcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHHHHhCCce
Confidence 4567777799988887787774 7999999999999999988766677778888888889876555555444 78
Q ss_pred EEEecCcccC-----CCCceeeecHHH-----HHHHHhc--CcccCCCccEEEEeccCCCC
Q 039491 470 GLLTGDVSLR-----PEASCLIMTTEI-----LRSMLYR--GADIIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 470 glltGdv~in-----~~a~IlV~TpEi-----L~smL~~--~~~~l~~v~lVI~DEaH~l~ 518 (1379)
|+++.+.+.. -.++|+++|..- ||+.+.. .....+.+.+.|+|||+.+.
T Consensus 151 G~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 151 GINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred eeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 8887765532 247999999843 4433221 12345788999999999764
No 150
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.07 E-value=1.6e-08 Score=128.13 Aligned_cols=123 Identities=18% Similarity=0.161 Sum_probs=95.0
Q ss_pred hccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-----c
Q 039491 394 ALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-----D 468 (1379)
Q Consensus 394 a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-----~ 468 (1379)
.+.++..+++.|.-+.-.+.+| -++.+.||.|||+++.+|++...-.|..|-+++++..||.+-+..+...| .
T Consensus 70 ~R~lG~r~ydvQlig~l~L~~G--~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLs 147 (870)
T CHL00122 70 FRTLGLRHFDVQLIGGLVLNDG--KIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLT 147 (870)
T ss_pred HHHhCCCCCchHhhhhHhhcCC--ccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCCc
Confidence 3457777889998877666555 69999999999999999887666678889999999999999888777765 7
Q ss_pred EEEEecCcccCC-----CCceeeecHH-----HHHHHHhc--CcccCCCccEEEEeccCCCC
Q 039491 469 VGLLTGDVSLRP-----EASCLIMTTE-----ILRSMLYR--GADIIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 469 VglltGdv~in~-----~a~IlV~TpE-----iL~smL~~--~~~~l~~v~lVI~DEaH~l~ 518 (1379)
||++.++.+... .++|+++|.. .|++.+.. .....+.+.++|+||||.+.
T Consensus 148 vg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 148 VGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred eeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 888887766422 4789999984 55554432 22346789999999999764
No 151
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.03 E-value=2.7e-08 Score=128.87 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=60.5
Q ss_pred cCCCCC-CHHHHHHHHH----HHCCCcEEEEcCCCccHHHHHHHHHHHHHh-cC--CcEEEecchHHHHHHHHHHHhc
Q 039491 396 DFPFEL-DNFQKEAIYY----LENGDSVFVAAHTSAGKTVVAEYAFALATK-HC--TRAVYTAPIKTISNQKYRDFSG 465 (1379)
Q Consensus 396 ~~pFeL-~~~Q~eAI~~----L~~g~sVlV~ApTGSGKTlvae~aI~~~l~-~~--~raIylsPtkaLsnQk~~~~~~ 465 (1379)
.|||++ +|.|++.+.. +..+++.++.||||+|||++.+.+.+.+.. .+ .+++|.+.|..=..|..+++++
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 589995 9999997765 467899999999999999999888887765 33 7999999999999998888877
No 152
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.95 E-value=8.5e-09 Score=118.97 Aligned_cols=145 Identities=23% Similarity=0.261 Sum_probs=96.9
Q ss_pred HHHHHHHHH---H----------CCCcEEEEcCCCccHHHHHHHHHHHHHhcC-----CcEEEecchHHHHHHHHHHHhc
Q 039491 404 FQKEAIYYL---E----------NGDSVFVAAHTSAGKTVVAEYAFALATKHC-----TRAVYTAPIKTISNQKYRDFSG 465 (1379)
Q Consensus 404 ~Q~eAI~~L---~----------~g~sVlV~ApTGSGKTlvae~aI~~~l~~~-----~raIylsPtkaLsnQk~~~~~~ 465 (1379)
||.+|+..+ + ..+.++++..+|+|||+.+...+....... .++||++|. .+..|+..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 688888876 2 346789999999999998766655433222 249999999 888999999998
Q ss_pred cc-----cEEEEecCc-------ccCCCCceeeecHHHHH--------HHHhcCcccCCCccEEEEeccCCCCCccchhH
Q 039491 466 KF-----DVGLLTGDV-------SLRPEASCLIMTTEILR--------SMLYRGADIIRDIEWVIFDEVHYVNDIERGVV 525 (1379)
Q Consensus 466 ~f-----~VglltGdv-------~in~~a~IlV~TpEiL~--------smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v 525 (1379)
.+ ++-++.|+. ......+++|+|++.+. ..+.. -++++||+||+|.+.+. ...
T Consensus 80 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~-----~~~~~vIvDEaH~~k~~--~s~ 152 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQ-----IKWDRVIVDEAHRLKNK--DSK 152 (299)
T ss_dssp HSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT-----SEEEEEEETTGGGGTTT--TSH
T ss_pred ccccccccccccccccccccccccccccceeeecccccccccccccccccccc-----ccceeEEEecccccccc--ccc
Confidence 87 567777766 23456899999999998 22211 34899999999999543 333
Q ss_pred HHHHHHHcCccceEEEeccc-CCCh-HHHHHHHh
Q 039491 526 WEEVIIMLPRHINIVLLSAT-VPNT-VEFADWIG 557 (1379)
Q Consensus 526 ~eeii~~Lp~~vqiIlLSAT-vpN~-~efa~wl~ 557 (1379)
.-..+..+. ....++|||| +.|. .++...+.
T Consensus 153 ~~~~l~~l~-~~~~~lLSgTP~~n~~~dl~~~l~ 185 (299)
T PF00176_consen 153 RYKALRKLR-ARYRWLLSGTPIQNSLEDLYSLLR 185 (299)
T ss_dssp HHHHHHCCC-ECEEEEE-SS-SSSGSHHHHHHHH
T ss_pred ccccccccc-cceEEeeccccccccccccccchh
Confidence 333444455 5677999999 4444 46655554
No 153
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.92 E-value=6.8e-08 Score=122.72 Aligned_cols=377 Identities=17% Similarity=0.161 Sum_probs=206.7
Q ss_pred CCHHHHHHHHHH--H-C-CCcEEEEcCCCccHHHHHHHHHH--HHHh-------cCCcEEEecchHHHHHHHHHHHhccc
Q 039491 401 LDNFQKEAIYYL--E-N-GDSVFVAAHTSAGKTVVAEYAFA--LATK-------HCTRAVYTAPIKTISNQKYRDFSGKF 467 (1379)
Q Consensus 401 L~~~Q~eAI~~L--~-~-g~sVlV~ApTGSGKTlvae~aI~--~~l~-------~~~raIylsPtkaLsnQk~~~~~~~f 467 (1379)
|+.||++.|..| + + +-+.++|-..|-|||+-..-.++ ...+ +..-.+|+||. .|..-|..++.++|
T Consensus 976 LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~ 1054 (1549)
T KOG0392|consen 976 LRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFF 1054 (1549)
T ss_pred HHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhc
Confidence 799999999886 2 2 34679999999999985433333 2223 22348999995 89999999999988
Q ss_pred ---cEEEEecCccc----C---CCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccc
Q 039491 468 ---DVGLLTGDVSL----R---PEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHI 537 (1379)
Q Consensus 468 ---~VglltGdv~i----n---~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~v 537 (1379)
+|-.++|.-.. + .+++|+|++++.+|+-+.. ..-.++.++|+||-|-|.+. +...|. ...++...
T Consensus 1055 pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~-ktkl~k-avkqL~a~- 1129 (1549)
T KOG0392|consen 1055 PFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS-KTKLTK-AVKQLRAN- 1129 (1549)
T ss_pred chhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch-HHHHHH-HHHHHhhc-
Confidence 66666765442 2 3479999999999975421 11246789999999999864 344444 34455443
Q ss_pred eEEEeccc-CCCh-HHHHHHHhhhcCC--------------cEEEEccCC------------------------------
Q 039491 538 NIVLLSAT-VPNT-VEFADWIGRTKQK--------------KIRVTGTTK------------------------------ 571 (1379)
Q Consensus 538 qiIlLSAT-vpN~-~efa~wl~~~~~~--------------~i~vi~t~~------------------------------ 571 (1379)
+.+.||.| +.|. .|+-..+...+.+ |+---..++
T Consensus 1130 hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKe 1209 (1549)
T KOG0392|consen 1130 HRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKE 1209 (1549)
T ss_pred ceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34668888 5554 4554444333322 111000000
Q ss_pred ------CCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccC--CCCCCCCCCC-------Ccccccccc
Q 039491 572 ------RPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASG--ATGSYAGASS-------PRDGARAQK 636 (1379)
Q Consensus 572 ------RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~ 636 (1379)
.|--++.|++.-+ .. -++....+.++.+..... ..+....... .+..++--.
T Consensus 1210 dVL~DLPpKIIQDyyCeLs---------~l----Q~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcn 1276 (1549)
T KOG0392|consen 1210 DVLKDLPPKIIQDYYCELS---------PL----QKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCN 1276 (1549)
T ss_pred HHHhhCChhhhhheeeccC---------HH----HHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcC
Confidence 0011222221111 00 011111111111100000 0000000000 000000000
Q ss_pred cCCCCCCCCCCccccccccCCCCCCCcc----cccchhHHHHHHHHHHHh-------------CCCCCEEEEeCChhHHH
Q 039491 637 REHPNRGKQNKHSVVGIKNSGGSQNNWG----LRRSEVSIWLTLINKLSK-------------KSLLPVVIFCFSKNHCD 699 (1379)
Q Consensus 637 ~~~~~~gr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Li~~L~~-------------~~~~pvIVFv~Srk~ce 699 (1379)
--.--.++ .++.....-..-.+-.++ ........+..|+..+.- ...++++|||.-+...+
T Consensus 1277 HpaLvlt~--~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlD 1354 (1549)
T KOG0392|consen 1277 HPALVLTP--VHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLD 1354 (1549)
T ss_pred CcceeeCC--CcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHH
Confidence 00000000 000000000000000000 001112223333333221 13578999999999999
Q ss_pred HHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCC-CeeEE
Q 039491 700 KLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRG-VVKVL 778 (1379)
Q Consensus 700 ~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G-~ikVL 778 (1379)
.+-+.|.+.-+.... --.+-|..+|..|..+...|.++ .|+||
T Consensus 1355 lVekDL~k~~mpsVt------------------------------------ymRLDGSVpp~~R~kiV~~FN~DptIDvL 1398 (1549)
T KOG0392|consen 1355 LVEKDLFKKYMPSVT------------------------------------YMRLDGSVPPGDRQKIVERFNEDPTIDVL 1398 (1549)
T ss_pred HHHHHHhhhhcCcee------------------------------------EEEecCCCCcHHHHHHHHHhcCCCceeEE
Confidence 888877553222210 12367999999999999999998 89987
Q ss_pred E-ecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCC
Q 039491 779 F-STETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEI 842 (1379)
Q Consensus 779 V-ATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~ 842 (1379)
+ +|-+.+.|+|+.+.+.||- ++. .++|..=.|..-||.|-|+...-.||.+.+...
T Consensus 1399 lLTThVGGLGLNLTGADTVVF----vEH----DWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGT 1455 (1549)
T KOG0392|consen 1399 LLTTHVGGLGLNLTGADTVVF----VEH----DWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGT 1455 (1549)
T ss_pred EEeeeccccccccCCCceEEE----Eec----CCCchhhHHHHHHHHhhcCceeeeeeeehhccc
Confidence 6 6689999999986655554 444 678888899999999999988888888887765
No 154
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.85 E-value=4.6e-09 Score=129.23 Aligned_cols=360 Identities=18% Similarity=0.196 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcC-----CcEEEecchHHHHHHHHHHHhccc--cEEEEecC
Q 039491 403 NFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHC-----TRAVYTAPIKTISNQKYRDFSGKF--DVGLLTGD 475 (1379)
Q Consensus 403 ~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~-----~raIylsPtkaLsnQk~~~~~~~f--~VglltGd 475 (1379)
.+-...+..+..++.+++-+.||+|||.-++--|+.++... ..+.+.-|++--+.-..+++.+.- .+|-..|-
T Consensus 381 ~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy 460 (1282)
T KOG0921|consen 381 QYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGY 460 (1282)
T ss_pred HHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccc
Confidence 34445555667788899999999999987766677666322 457778888887777777776543 33333221
Q ss_pred ------cccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHH------cCccceEEEec
Q 039491 476 ------VSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIM------LPRHINIVLLS 543 (1379)
Q Consensus 476 ------v~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~------Lp~~vqiIlLS 543 (1379)
..-.+...|+.+|-+.+.+|++.+ ++.+.++|+||+|.- -++-..+++. .-+..+++++|
T Consensus 461 ~vRf~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiher-----dv~~dfll~~lr~m~~ty~dl~v~lms 532 (1282)
T KOG0921|consen 461 NVRFDSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHER-----DVDTDFVLIVLREMISTYRDLRVVLMS 532 (1282)
T ss_pred cccccccccccccceeeeccchhhhhhhhc---ccccccccchhhhhh-----ccchHHHHHHHHhhhccchhhhhhhhh
Confidence 112455689999999999999976 678899999999953 3333323222 23568899999
Q ss_pred ccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecC--ceeeeccCcccchhhHHHHHHHHHhhccccccCCCCC
Q 039491 544 ATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSG--EFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGS 621 (1379)
Q Consensus 544 ATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~--~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~ 621 (1379)
||+ |+.-|..+++.... ..-..|..|.+.+....- .+..+.. .....+ .++ .+.......+++.
T Consensus 533 atI-dTd~f~~~f~~~p~-----~~~~grt~pvq~F~led~~~~~~~vp~-~~~~~k-~k~-~~~~~~~~~ddK~----- 598 (1282)
T KOG0921|consen 533 ATI-DTDLFTNFFSSIPD-----VTVHGRTFPVQSFFLEDIIQMTQFVPS-EPSQKK-RKK-DDDEEDEEVDDKG----- 598 (1282)
T ss_pred ccc-chhhhhhhhccccc-----eeeccccccHHHHHHHHhhhhhhccCC-CcCccc-hhh-cccccCchhhhcc-----
Confidence 998 56667777774432 222334444332211000 0000000 000000 000 0000000000000
Q ss_pred CCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCC-CCCEEEEeCChhHHHH
Q 039491 622 YAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKS-LLPVVIFCFSKNHCDK 700 (1379)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~-~~pvIVFv~Srk~ce~ 700 (1379)
+.- +... ....... -.........+-..-.....++..+...+ .+-++||.+--+..-.
T Consensus 599 --------~n~-n~~~------dd~~~~~-----~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~ 658 (1282)
T KOG0921|consen 599 --------RNM-NILC------DPSYNES-----TRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMT 658 (1282)
T ss_pred --------ccc-cccc------Chhhcch-----hhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhh
Confidence 000 0000 0000000 00000000000011223334444443333 3468888888887777
Q ss_pred HHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEe
Q 039491 701 LADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFS 780 (1379)
Q Consensus 701 lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVA 780 (1379)
+...|.....-- .+-++-|...|+-+...+...|.+...+|..|++..
T Consensus 659 L~~~ll~~~~fg--------------------------------~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~s 706 (1282)
T KOG0921|consen 659 LCNRLLEHQEFG--------------------------------QANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILS 706 (1282)
T ss_pred hhhhhhhhhhhc--------------------------------cchhcccccchhhcccHhhhhccCcccccccccccc
Confidence 777664321111 111223445788888888888999999999999999
Q ss_pred cccccccCCCCCceEEEccccccC-------Cc---ccccCCHHHHHHHhcccCCCCCCCcEEEEEEec
Q 039491 781 TETFAMGVNAPARTVVFDNLRKFD-------GR---EFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCR 839 (1379)
Q Consensus 781 Tetla~GINiPa~tvVI~~~~kfD-------g~---~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~ 839 (1379)
|.+...-+.+.+++.|+....-+- .. ...+.+.....|+.||+||.-. |.|+.+|.
T Consensus 707 tniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~---G~~f~lcs 772 (1282)
T KOG0921|consen 707 TNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRP---GFCFHLCS 772 (1282)
T ss_pred cceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecc---cccccccH
Confidence 999999999999877766432211 00 2335578889999999999763 88888885
No 155
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.83 E-value=2.8e-07 Score=113.39 Aligned_cols=154 Identities=21% Similarity=0.292 Sum_probs=110.5
Q ss_pred CCCCCHHHHHHHHHH----HCCCcEEEEcCCCccHH--HHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc---c
Q 039491 398 PFELDNFQKEAIYYL----ENGDSVFVAAHTSAGKT--VVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF---D 468 (1379)
Q Consensus 398 pFeL~~~Q~eAI~~L----~~g~sVlV~ApTGSGKT--lvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f---~ 468 (1379)
+++|-+||.-.+..| .++-+.|++-..|-||| ++|.+|.+........=+|+||.-.|-| |.++|.+.. .
T Consensus 397 ~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTleN-WlrEf~kwCPsl~ 475 (941)
T KOG0389|consen 397 GIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLEN-WLREFAKWCPSLK 475 (941)
T ss_pred CCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHHH-HHHHHHHhCCceE
Confidence 577899999998876 45667899999999999 4666676666666677899999988755 778888776 7
Q ss_pred EEEEecCccc-----------CCCCceeeecHHHH------HHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHH
Q 039491 469 VGLLTGDVSL-----------RPEASCLIMTTEIL------RSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVII 531 (1379)
Q Consensus 469 VglltGdv~i-----------n~~a~IlV~TpEiL------~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~ 531 (1379)
|-.+.|...- ....+|+++|+... ++++.+ .++++||+||.|++.+.. ...|..++
T Consensus 476 Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~-----~~~n~viyDEgHmLKN~~-SeRy~~LM- 548 (941)
T KOG0389|consen 476 VEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKN-----QKFNYVIYDEGHMLKNRT-SERYKHLM- 548 (941)
T ss_pred EEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHh-----ccccEEEecchhhhhccc-hHHHHHhc-
Confidence 8888887652 12578999999766 344433 468899999999998643 33344332
Q ss_pred HcCccceEEEeccc-CC-ChHHHHHHHhhhc
Q 039491 532 MLPRHINIVLLSAT-VP-NTVEFADWIGRTK 560 (1379)
Q Consensus 532 ~Lp~~vqiIlLSAT-vp-N~~efa~wl~~~~ 560 (1379)
.++. -..|+||.| +. |-.|+...+.-..
T Consensus 549 ~I~A-n~RlLLTGTPLQNNL~ELiSLL~Fvl 578 (941)
T KOG0389|consen 549 SINA-NFRLLLTGTPLQNNLKELISLLAFVL 578 (941)
T ss_pred cccc-cceEEeeCCcccccHHHHHHHHHHHh
Confidence 3343 356889999 34 4457777666544
No 156
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.71 E-value=7e-07 Score=113.48 Aligned_cols=122 Identities=18% Similarity=0.145 Sum_probs=96.0
Q ss_pred ccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-----cE
Q 039491 395 LDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-----DV 469 (1379)
Q Consensus 395 ~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-----~V 469 (1379)
+.++..+++.|.-.--.+..| -++.+.||-|||++|.+|++...-.|..|-++++.--||..=++.+...+ .|
T Consensus 80 R~lG~r~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtv 157 (939)
T PRK12902 80 RVLGMRHFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSV 157 (939)
T ss_pred HHhCCCcchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeE
Confidence 356777778888777777666 48999999999999999988887788899999999999998776666654 78
Q ss_pred EEEecCcccC-----CCCceeeecHHHH-----HHHHhc--CcccCCCccEEEEeccCCCC
Q 039491 470 GLLTGDVSLR-----PEASCLIMTTEIL-----RSMLYR--GADIIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 470 glltGdv~in-----~~a~IlV~TpEiL-----~smL~~--~~~~l~~v~lVI~DEaH~l~ 518 (1379)
|++.++.+.. -.++|+++|..-| ++.+.. +....+.+.+.|+||||.|.
T Consensus 158 g~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 158 GLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred EEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 8888776532 2489999999655 655543 22456889999999999864
No 157
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.70 E-value=2.9e-06 Score=107.04 Aligned_cols=150 Identities=16% Similarity=0.144 Sum_probs=97.6
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHH-hcCCcEEEecchHHHHHHHHHHHhccc--cEEEE--ecCcccCC-CCceeeecH
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALAT-KHCTRAVYTAPIKTISNQKYRDFSGKF--DVGLL--TGDVSLRP-EASCLIMTT 489 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l-~~~~raIylsPtkaLsnQk~~~~~~~f--~Vgll--tGdv~in~-~a~IlV~Tp 489 (1379)
.-.+|-||.|+|||.+..-.+...+ ....++++++..++|+.+...+|+... +...+ .++..++. ..+-++++.
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~i~~~~~~rLivqI 129 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYIIDGRPYDRLIVQI 129 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeeccccccccccccCeEEEEe
Confidence 4568899999999985444444443 456899999999999999999998654 22221 12333332 356677777
Q ss_pred HHHHHHHhcCcccCCCccEEEEeccCCCCCcc-------chhHHHHHHHHcCccceEEEecccCCCh-HHHHHHHhhhcC
Q 039491 490 EILRSMLYRGADIIRDIEWVIFDEVHYVNDIE-------RGVVWEEVIIMLPRHINIVLLSATVPNT-VEFADWIGRTKQ 561 (1379)
Q Consensus 490 EiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~-------rG~v~eeii~~Lp~~vqiIlLSATvpN~-~efa~wl~~~~~ 561 (1379)
+.|.... ...+.++++||+||+-.+...- +..+++.+...+....++|+|-||+.+. .+|..-+. ..
T Consensus 130 dSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~~R--p~ 204 (824)
T PF02399_consen 130 DSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLASCR--PD 204 (824)
T ss_pred hhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHHHhC--CC
Confidence 7775442 3467889999999987554332 2233333334455667899999999865 36655544 23
Q ss_pred CcEEEEccC
Q 039491 562 KKIRVTGTT 570 (1379)
Q Consensus 562 ~~i~vi~t~ 570 (1379)
.+++++...
T Consensus 205 ~~i~vI~n~ 213 (824)
T PF02399_consen 205 ENIHVIVNT 213 (824)
T ss_pred CcEEEEEee
Confidence 456655544
No 158
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.68 E-value=1.3e-07 Score=118.96 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=48.0
Q ss_pred HHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh--cCCcEEEecchHHHHHHHHHHHh
Q 039491 409 IYYLENGDSVFVAAHTSAGKTVVAEYAFALATK--HCTRAVYTAPIKTISNQKYRDFS 464 (1379)
Q Consensus 409 I~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~--~~~raIylsPtkaLsnQk~~~~~ 464 (1379)
..++.+++.+++.|+||+|||++|++|++..+. .+.++||++||++|..|.++++.
T Consensus 10 ~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~ 67 (636)
T TIGR03117 10 LTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELE 67 (636)
T ss_pred HHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHH
Confidence 344567889999999999999999999877654 47899999999999999988665
No 159
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.60 E-value=8.4e-06 Score=95.84 Aligned_cols=153 Identities=22% Similarity=0.271 Sum_probs=100.2
Q ss_pred CCCHHHHHHHHHHHCC-----CcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc----cEE
Q 039491 400 ELDNFQKEAIYYLENG-----DSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF----DVG 470 (1379)
Q Consensus 400 eL~~~Q~eAI~~L~~g-----~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f----~Vg 470 (1379)
.|-|||++.+..+... ...+++-..|-|||.-+. +++++--.+..+++++|+.||+ ||..++.... +|-
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtI-aLllae~~ra~tLVvaP~VAlm-QW~nEI~~~T~gslkv~ 261 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTI-ALLLAEVDRAPTLVVAPTVALM-QWKNEIERHTSGSLKVY 261 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHH-HHHHhccccCCeeEEccHHHHH-HHHHHHHHhccCceEEE
Confidence 4679999999887432 235888999999998532 3333334566799999999985 7777777665 788
Q ss_pred EEecCccc-C----CCCceeeecHHHHHHHHhcCc-------------ccCCCcc--EEEEeccCCCCCccchhHHHHHH
Q 039491 471 LLTGDVSL-R----PEASCLIMTTEILRSMLYRGA-------------DIIRDIE--WVIFDEVHYVNDIERGVVWEEVI 530 (1379)
Q Consensus 471 lltGdv~i-n----~~a~IlV~TpEiL~smL~~~~-------------~~l~~v~--lVI~DEaH~l~d~~rG~v~eeii 530 (1379)
+++|...- + ...+++.+|+.++-+..++.. ..+..++ -||+||||++.+.. ......+.
T Consensus 262 ~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~-snTArAV~ 340 (791)
T KOG1002|consen 262 IYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQ-SNTARAVF 340 (791)
T ss_pred EEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccccccc-ccHHHHHH
Confidence 88885431 1 247899999988877655421 2344444 59999999998642 22222222
Q ss_pred HHcCccceEEEeccc-CCChH-HHHHHHh
Q 039491 531 IMLPRHINIVLLSAT-VPNTV-EFADWIG 557 (1379)
Q Consensus 531 ~~Lp~~vqiIlLSAT-vpN~~-efa~wl~ 557 (1379)
.|. ...-++||.| +.|.. |+...+.
T Consensus 341 -~L~-tt~rw~LSGTPLQNrigElySLiR 367 (791)
T KOG1002|consen 341 -ALE-TTYRWCLSGTPLQNRIGELYSLIR 367 (791)
T ss_pred -hhH-hhhhhhccCCcchhhHHHHHHHHH
Confidence 222 2456889999 44553 5555554
No 160
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.40 E-value=1.1e-05 Score=103.83 Aligned_cols=121 Identities=17% Similarity=0.120 Sum_probs=82.4
Q ss_pred cCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-----cEE
Q 039491 396 DFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-----DVG 470 (1379)
Q Consensus 396 ~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-----~Vg 470 (1379)
.|+..+.+.|.-.--.|.+| -+.-+.||-|||++|.+|+....-.|.-|-+++..--||.-=...+...| .||
T Consensus 165 ~W~m~~yDVQliGgivLh~G--~IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg 242 (1112)
T PRK12901 165 TWDMVHYDVQLIGGVVLHQG--KIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVD 242 (1112)
T ss_pred cCCCcccchHHhhhhhhcCC--ceeeecCCCCchhHHHHHHHHHHHcCCCcEEEEechhhhhccHHHHHHHHHHhCCcee
Confidence 35555566666555555555 58999999999999999988777677777777777888875555555544 777
Q ss_pred EEec-Cccc-----CCCCceeeecHH-----HHHHHHhc--CcccCCCccEEEEeccCCCC
Q 039491 471 LLTG-DVSL-----RPEASCLIMTTE-----ILRSMLYR--GADIIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 471 lltG-dv~i-----n~~a~IlV~TpE-----iL~smL~~--~~~~l~~v~lVI~DEaH~l~ 518 (1379)
++.. +... .-.++|.++|.. .||+-+.. .....+.+.+.|+|||+-++
T Consensus 243 ~i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 243 CIDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred ecCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 7754 2221 124789999984 33433222 12345779999999999764
No 161
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.17 E-value=0.00012 Score=89.87 Aligned_cols=148 Identities=18% Similarity=0.226 Sum_probs=98.8
Q ss_pred CCCCCHHHHHHHHHHHC-----CCcEEEEcCCCccHHHHHHHHHHHHH-----hc-----CCcEEEecchHHHHHHHHHH
Q 039491 398 PFELDNFQKEAIYYLEN-----GDSVFVAAHTSAGKTVVAEYAFALAT-----KH-----CTRAVYTAPIKTISNQKYRD 462 (1379)
Q Consensus 398 pFeL~~~Q~eAI~~L~~-----g~sVlV~ApTGSGKTlvae~aI~~~l-----~~-----~~raIylsPtkaLsnQk~~~ 462 (1379)
-++|-|+|+.|+..+.- +.-.+++..-|-|||+.-.-.|+..- +. ..+++|++| ..|..||+.+
T Consensus 323 ~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~P-aSli~qW~~E 401 (901)
T KOG4439|consen 323 KVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICP-ASLIHQWEAE 401 (901)
T ss_pred eeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCc-HHHHHHHHHH
Confidence 35588999999998742 34579999999999985333333211 11 125999999 5888999999
Q ss_pred Hhccc-----cEEEEecCcc--cCC----CCceeeecHHHHHH----HHhc--CcccCCC--ccEEEEeccCCCCCccch
Q 039491 463 FSGKF-----DVGLLTGDVS--LRP----EASCLIMTTEILRS----MLYR--GADIIRD--IEWVIFDEVHYVNDIERG 523 (1379)
Q Consensus 463 ~~~~f-----~VglltGdv~--in~----~a~IlV~TpEiL~s----mL~~--~~~~l~~--v~lVI~DEaH~l~d~~rG 523 (1379)
+.... .|.+++|+.. +.+ ..+|+|+|+....+ -+.. ....+.. +..||+||||.+.+. -
T Consensus 402 v~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~--~ 479 (901)
T KOG4439|consen 402 VARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNS--N 479 (901)
T ss_pred HHHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhccc--c
Confidence 98876 7899999874 222 46899999976654 1111 1222333 456999999999864 3
Q ss_pred hHHHHHHHHcCccceEEEeccc-CCCh
Q 039491 524 VVWEEVIIMLPRHINIVLLSAT-VPNT 549 (1379)
Q Consensus 524 ~v~eeii~~Lp~~vqiIlLSAT-vpN~ 549 (1379)
..-...+..|..+. -.+||+| +.|.
T Consensus 480 tq~S~AVC~L~a~~-RWclTGTPiqNn 505 (901)
T KOG4439|consen 480 TQCSKAVCKLSAKS-RWCLTGTPIQNN 505 (901)
T ss_pred hhHHHHHHHHhhcc-eeecccCccccc
Confidence 33334444454433 4788888 4444
No 162
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.15 E-value=6.8e-05 Score=99.62 Aligned_cols=109 Identities=20% Similarity=0.141 Sum_probs=94.1
Q ss_pred CEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHH
Q 039491 687 PVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVI 766 (1379)
Q Consensus 687 pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~V 766 (1379)
++++|+.-....+-+...|...++. ...++|+++...|...
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~---------------------------------------~~~ldG~~~~~~r~~~ 753 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIK---------------------------------------YVRLDGSTPAKRRQEL 753 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCc---------------------------------------EEEEeCCCChhhHHHH
Confidence 8999999999888888888765421 4468999999999999
Q ss_pred HHHhcCC--CeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCC
Q 039491 767 EMLFCRG--VVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEI 842 (1379)
Q Consensus 767 e~lF~~G--~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~ 842 (1379)
...|.++ ..-+|++|.....|+|+-..++||. ||. +++|....|...||-|.|++..-.++-++..+.
T Consensus 754 i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~----~d~----~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 754 IDRFNADEEEKVFLLSLKAGGLGLNLTGADTVIL----FDP----WWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred HHHhhcCCCCceEEEEecccccceeecccceEEE----ecc----ccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 9999986 5567778889999999999999999 999 999999999999999999987788888777654
No 163
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.14 E-value=1.1e-05 Score=92.10 Aligned_cols=122 Identities=20% Similarity=0.252 Sum_probs=90.7
Q ss_pred ccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-----cE
Q 039491 395 LDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-----DV 469 (1379)
Q Consensus 395 ~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-----~V 469 (1379)
+.+++.|++.|.-++-.+..|+ ++...||-|||+++.++.+...-.|..|-+++....||..=+..+...| .|
T Consensus 72 r~~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv 149 (266)
T PF07517_consen 72 RTLGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSV 149 (266)
T ss_dssp HHTS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--E
T ss_pred HHcCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhhcc
Confidence 4678889999999999998876 9999999999999877776666678889999999999998887777766 89
Q ss_pred EEEecCcccCC-----CCceeeecHHHH-----HHHHhcCc--ccCCCccEEEEeccCCCC
Q 039491 470 GLLTGDVSLRP-----EASCLIMTTEIL-----RSMLYRGA--DIIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 470 glltGdv~in~-----~a~IlV~TpEiL-----~smL~~~~--~~l~~v~lVI~DEaH~l~ 518 (1379)
|+++++.+... .++|+.+|...+ ++.+.... ...+...++|+||||.+.
T Consensus 150 ~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 150 GIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp EEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred ccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99988876422 478999999755 33333222 236889999999999754
No 164
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.14 E-value=5.8e-06 Score=96.06 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=59.4
Q ss_pred cCCCCCCHHHHHH----HHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh-cCC-----cEEEecchHHHHHHHHHHHhc
Q 039491 396 DFPFELDNFQKEA----IYYLENGDSVFVAAHTSAGKTVVAEYAFALATK-HCT-----RAVYTAPIKTISNQKYRDFSG 465 (1379)
Q Consensus 396 ~~pFeL~~~Q~eA----I~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~-~~~-----raIylsPtkaLsnQk~~~~~~ 465 (1379)
.|||+++|.|.+. ...+.+|.++++.||||+|||++++.+++..+. .+. +++|.++|.++..|....+++
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 4 YFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 4999999999994 445678899999999999999999999875543 333 899999999999888888776
Q ss_pred c
Q 039491 466 K 466 (1379)
Q Consensus 466 ~ 466 (1379)
.
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 4
No 165
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.14 E-value=5.8e-06 Score=96.06 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=59.4
Q ss_pred cCCCCCCHHHHHH----HHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh-cCC-----cEEEecchHHHHHHHHHHHhc
Q 039491 396 DFPFELDNFQKEA----IYYLENGDSVFVAAHTSAGKTVVAEYAFALATK-HCT-----RAVYTAPIKTISNQKYRDFSG 465 (1379)
Q Consensus 396 ~~pFeL~~~Q~eA----I~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~-~~~-----raIylsPtkaLsnQk~~~~~~ 465 (1379)
.|||+++|.|.+. ...+.+|.++++.||||+|||++++.+++..+. .+. +++|.++|.++..|....+++
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 4 YFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 4999999999994 445678899999999999999999999875543 333 899999999999888888776
Q ss_pred c
Q 039491 466 K 466 (1379)
Q Consensus 466 ~ 466 (1379)
.
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 4
No 166
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.08 E-value=0.00026 Score=94.30 Aligned_cols=127 Identities=16% Similarity=0.160 Sum_probs=88.4
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHH--hcCCcEEEecchHHHHHHHHHHHhccccEEE---EecCcc-----cC-CCCce
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALAT--KHCTRAVYTAPIKTISNQKYRDFSGKFDVGL---LTGDVS-----LR-PEASC 484 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l--~~~~raIylsPtkaLsnQk~~~~~~~f~Vgl---ltGdv~-----in-~~a~I 484 (1379)
+..+|.=-||||||+...++....+ ....++++++-++.|-.|.+..|.....+.. -..+.. +. ....|
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~~~~~i 353 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKELLEDGKGKI 353 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHHHhcCCCcE
Confidence 4589999999999987666554444 4568999999999999999999998762111 111111 12 23589
Q ss_pred eeecHHHHHHHHhcC--cccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccC
Q 039491 485 LIMTTEILRSMLYRG--ADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATV 546 (1379)
Q Consensus 485 lV~TpEiL~smL~~~--~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATv 546 (1379)
+|+|...|....... ...-++==+||+||||+--. |..-..+-..++. ...+++|+|+
T Consensus 354 i~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~---G~~~~~~~~~~~~-a~~~gFTGTP 413 (962)
T COG0610 354 IVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY---GELAKLLKKALKK-AIFIGFTGTP 413 (962)
T ss_pred EEEEecccchhhhcccccccCCCcEEEEEechhhccc---cHHHHHHHHHhcc-ceEEEeeCCc
Confidence 999999998877553 11223334789999998743 5555545555654 8899999994
No 167
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.02 E-value=3.4e-05 Score=100.15 Aligned_cols=129 Identities=17% Similarity=0.214 Sum_probs=83.9
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHHhc--CCcEEEecchHHHHHHHHHHHh-----ccc---------cEEEEecCc---
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALATKH--CTRAVYTAPIKTISNQKYRDFS-----GKF---------DVGLLTGDV--- 476 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l~~--~~raIylsPtkaLsnQk~~~~~-----~~f---------~VglltGdv--- 476 (1379)
.++.+.++||+|||.+|.-.|....+. ..+.|++||+.|+-.....-+. ..| +.-++.+..
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 378899999999999999888777654 4789999999998776654433 333 122333221
Q ss_pred ----c-c------------CC-CCceeeecHHHHHHHHh----------cCc-cc---CCCc-cEEEEeccCCCCCccch
Q 039491 477 ----S-L------------RP-EASCLIMTTEILRSMLY----------RGA-DI---IRDI-EWVIFDEVHYVNDIERG 523 (1379)
Q Consensus 477 ----~-i------------n~-~a~IlV~TpEiL~smL~----------~~~-~~---l~~v-~lVI~DEaH~l~d~~rG 523 (1379)
. . +. ..+|+|||.+.|.+-.. .+. .. +... -+||+||.|++... +
T Consensus 140 ~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~--~ 217 (986)
T PRK15483 140 SGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD--N 217 (986)
T ss_pred cccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc--h
Confidence 0 0 01 35899999998865211 111 11 1122 27999999999653 4
Q ss_pred hHHHHHHHHcCccceEEEecccCCC
Q 039491 524 VVWEEVIIMLPRHINIVLLSATVPN 548 (1379)
Q Consensus 524 ~v~eeii~~Lp~~vqiIlLSATvpN 548 (1379)
..|+.+ ..+.+. -++.+|||.++
T Consensus 218 k~~~~i-~~lnpl-~~lrysAT~~~ 240 (986)
T PRK15483 218 KFYQAI-EALKPQ-MIIRFGATFPD 240 (986)
T ss_pred HHHHHH-HhcCcc-cEEEEeeecCC
Confidence 578666 444432 36779999987
No 168
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.01 E-value=2.8e-05 Score=85.34 Aligned_cols=122 Identities=16% Similarity=0.185 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHH-CCC-cEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcc
Q 039491 400 ELDNFQKEAIYYLE-NGD-SVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVS 477 (1379)
Q Consensus 400 eL~~~Q~eAI~~L~-~g~-sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~ 477 (1379)
+|++-|++|+..+. +++ -++|.++.|+|||.+...........+.++++++||...+....+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~------------- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTG------------- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHT-------------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhC-------------
Confidence 37899999999985 443 467889999999987544333333567999999999888877555422
Q ss_pred cCCCCceeeecHHHHHHHHhcCc----ccCCCccEEEEeccCCCCCccchhHHHHHHHHcCc-cceEEEecc
Q 039491 478 LRPEASCLIMTTEILRSMLYRGA----DIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPR-HINIVLLSA 544 (1379)
Q Consensus 478 in~~a~IlV~TpEiL~smL~~~~----~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~-~vqiIlLSA 544 (1379)
+-..|...+........ ..+...++||+||+-++. ...+..++..++. +.++|++-=
T Consensus 68 ------~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~~~~~klilvGD 129 (196)
T PF13604_consen 68 ------IEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAKKSGAKLILVGD 129 (196)
T ss_dssp ------S-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-T-T-EEEEEE-
T ss_pred ------cchhhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHHhcCCEEEEECC
Confidence 12344333322111111 015567899999999987 4457777777765 677777643
No 169
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.99 E-value=3.2e-05 Score=97.92 Aligned_cols=80 Identities=23% Similarity=0.163 Sum_probs=67.9
Q ss_pred ecCCCChHHHHHHHHHhcC---CCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCC
Q 039491 754 HHAGLLPIVKEVIEMLFCR---GVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDK 830 (1379)
Q Consensus 754 hHggL~~~~Re~Ve~lF~~---G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~ 830 (1379)
+-|.....+|-..+..|.. -....|.+|.....|+|+.+.+.||. ||. .++|....|+--||-|-|...
T Consensus 756 LDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtvii----fds----dwnp~~d~qaqdrahrigq~~ 827 (1157)
T KOG0386|consen 756 LDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVII----FDS----DWNPHQDLQAQDRAHRIGQKK 827 (1157)
T ss_pred ecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEE----ecC----CCCchhHHHHHHHHHHhhchh
Confidence 4577778888888889975 35678999999999999998877777 999 899999999999999999987
Q ss_pred cEEEEEEecCC
Q 039491 831 IGTVVVLCRDE 841 (1379)
Q Consensus 831 ~G~vIil~~~~ 841 (1379)
.-.|+.+++..
T Consensus 828 evRv~rl~tv~ 838 (1157)
T KOG0386|consen 828 EVRVLRLITVN 838 (1157)
T ss_pred heeeeeeehhh
Confidence 78888877643
No 170
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.79 E-value=0.00019 Score=82.48 Aligned_cols=144 Identities=26% Similarity=0.285 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHH----------CCCcEEEEcCCCccHHHHHHHHHHHH-HhcCCcEEEecchHHHHHHHHHHHhccc--
Q 039491 401 LDNFQKEAIYYLE----------NGDSVFVAAHTSAGKTVVAEYAFALA-TKHCTRAVYTAPIKTISNQKYRDFSGKF-- 467 (1379)
Q Consensus 401 L~~~Q~eAI~~L~----------~g~sVlV~ApTGSGKTlvae~aI~~~-l~~~~raIylsPtkaLsnQk~~~~~~~f-- 467 (1379)
|+.-|.++|-... .+.-.|+--.||.||.-...-.|... ++...|+|+++..-.|-....|+|+...
T Consensus 38 LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~~ 117 (303)
T PF13872_consen 38 LSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGAD 117 (303)
T ss_pred ccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCCC
Confidence 7788998886642 23457888899999986543344444 4445679999999999999999999765
Q ss_pred --cEEEE----ecCcccCCCCceeeecHHHHHHHHhcCc---c-------cC-CC-ccEEEEeccCCCCCccch------
Q 039491 468 --DVGLL----TGDVSLRPEASCLIMTTEILRSMLYRGA---D-------II-RD-IEWVIFDEVHYVNDIERG------ 523 (1379)
Q Consensus 468 --~Vgll----tGdv~in~~a~IlV~TpEiL~smL~~~~---~-------~l-~~-v~lVI~DEaH~l~d~~rG------ 523 (1379)
.+-.+ .|+. +.-+..|+.+|+..|++.-..+. . ++ .+ =.+|||||||...+...+
T Consensus 118 ~i~v~~l~~~~~~~~-~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk 196 (303)
T PF13872_consen 118 NIPVHPLNKFKYGDI-IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSK 196 (303)
T ss_pred cccceechhhccCcC-CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccH
Confidence 12111 1221 23355799999998887653211 0 11 11 248999999998765432
Q ss_pred --hHHHHHHHHcCccceEEEecccC
Q 039491 524 --VVWEEVIIMLPRHINIVLLSATV 546 (1379)
Q Consensus 524 --~v~eeii~~Lp~~vqiIlLSATv 546 (1379)
...-++-..|| +.+++.+|||-
T Consensus 197 ~g~avl~LQ~~LP-~ARvvY~SATg 220 (303)
T PF13872_consen 197 TGIAVLELQNRLP-NARVVYASATG 220 (303)
T ss_pred HHHHHHHHHHhCC-CCcEEEecccc
Confidence 22233334465 57899999993
No 171
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.75 E-value=2.7e-05 Score=85.60 Aligned_cols=122 Identities=24% Similarity=0.298 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcC--CcEEEecchHHHHHHHHHHHhccccEEEEecCccc
Q 039491 401 LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHC--TRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSL 478 (1379)
Q Consensus 401 L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~--~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~i 478 (1379)
.+..|+.++.++.+.+-|++.+|.|+|||++|..+.+..+..+ .+++|+-|..+... ++|.+.|+..-
T Consensus 5 ~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~----------~lGflpG~~~e 74 (205)
T PF02562_consen 5 KNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGE----------DLGFLPGDLEE 74 (205)
T ss_dssp -SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT--------------SS------
T ss_pred CCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcc----------ccccCCCCHHH
Confidence 4789999999999888999999999999999887777776544 68999999865411 45555565431
Q ss_pred --CC-----------------------CCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc
Q 039491 479 --RP-----------------------EASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML 533 (1379)
Q Consensus 479 --n~-----------------------~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L 533 (1379)
.| +..|-+.+...+ ||.. +. -.+||+|||..+. -..+..++..+
T Consensus 75 K~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~i-----RGrt-~~-~~~iIvDEaQN~t----~~~~k~ilTR~ 143 (205)
T PF02562_consen 75 KMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFI-----RGRT-FD-NAFIIVDEAQNLT----PEELKMILTRI 143 (205)
T ss_dssp ---TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGG-----TT---B--SEEEEE-SGGG------HHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhh-----cCcc-cc-ceEEEEecccCCC----HHHHHHHHccc
Confidence 11 112222222222 1211 22 2799999999886 45677778888
Q ss_pred CccceEEEec
Q 039491 534 PRHINIVLLS 543 (1379)
Q Consensus 534 p~~vqiIlLS 543 (1379)
..+.++|++-
T Consensus 144 g~~skii~~G 153 (205)
T PF02562_consen 144 GEGSKIIITG 153 (205)
T ss_dssp -TT-EEEEEE
T ss_pred CCCcEEEEec
Confidence 8888887764
No 172
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.69 E-value=0.00011 Score=87.79 Aligned_cols=93 Identities=12% Similarity=0.135 Sum_probs=69.0
Q ss_pred cEEEEcCCCccHHHHHHHHHHHH--HhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALA--TKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRS 494 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~--l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL~s 494 (1379)
.++|.+..|||||+++...+... ...+.+++|+++..+|.+.....+.... ........+..+..+.+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~----------~~~~~~~~~~~~~~~i~ 72 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKY----------NPKLKKSDFRKPTSFIN 72 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhc----------ccchhhhhhhhhHHHHh
Confidence 47899999999999987777666 5778999999999999998888887643 11122334555555554
Q ss_pred HHhcCcccCCCccEEEEeccCCCCC
Q 039491 495 MLYRGADIIRDIEWVIFDEVHYVND 519 (1379)
Q Consensus 495 mL~~~~~~l~~v~lVI~DEaH~l~d 519 (1379)
.+........+.++|||||||++.+
T Consensus 73 ~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 73 NYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hcccccccCCcCCEEEEehhHhhhh
Confidence 4432234567899999999999987
No 173
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.67 E-value=0.00037 Score=90.62 Aligned_cols=127 Identities=19% Similarity=0.144 Sum_probs=83.6
Q ss_pred cCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcC--CcEEEecchHHHHHHHHHHHhccccEEEEe
Q 039491 396 DFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHC--TRAVYTAPIKTISNQKYRDFSGKFDVGLLT 473 (1379)
Q Consensus 396 ~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~--~raIylsPtkaLsnQk~~~~~~~f~Vgllt 473 (1379)
..+|.|++-|++|+..+..++.+++.++.|+|||.+.-..+..+...+ .+++.++||-.-+....+..
T Consensus 319 ~~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~---------- 388 (720)
T TIGR01448 319 KLRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVT---------- 388 (720)
T ss_pred hcCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhc----------
Confidence 467889999999999998888999999999999987543333333344 67888999977665432221
Q ss_pred cCcccCCCCceeeecHHHHHHHHhcC-----cccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEeccc
Q 039491 474 GDVSLRPEASCLIMTTEILRSMLYRG-----ADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSAT 545 (1379)
Q Consensus 474 Gdv~in~~a~IlV~TpEiL~smL~~~-----~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSAT 545 (1379)
|. --.|...+....... .......++||+||++++. ...+..++..++.+.++|++-=+
T Consensus 389 g~---------~a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 389 GL---------TASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLAALPDHARLLLVGDT 452 (720)
T ss_pred CC---------ccccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHHhCCCCCEEEEECcc
Confidence 11 012333332211110 0112457899999999986 33456677778888888876433
No 174
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.51 E-value=0.0058 Score=79.88 Aligned_cols=69 Identities=13% Similarity=-0.004 Sum_probs=53.5
Q ss_pred CCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCC
Q 039491 480 PEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPN 548 (1379)
Q Consensus 480 ~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN 548 (1379)
....|++.||.+|.+-+..+...+.+|..|||||||++.+..-...+-.+...-.+..-|.+|||.+..
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 356799999999999888998999999999999999997543333333444444556679999999654
No 175
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=97.49 E-value=0.0016 Score=82.24 Aligned_cols=144 Identities=21% Similarity=0.117 Sum_probs=99.7
Q ss_pred CCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEe--cCCCChHH
Q 039491 685 LLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIH--HAGLLPIV 762 (1379)
Q Consensus 685 ~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavh--HggL~~~~ 762 (1379)
+.++|||..|...-+-+-.+|.-. .+-..++..-|.+........+|.-++ -|......
T Consensus 1142 GDKlLVFSQSL~SLdLIe~fLe~v-------------------~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~ 1202 (1567)
T KOG1015|consen 1142 GDKLLVFSQSLISLDLIEDFLELV-------------------SREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQS 1202 (1567)
T ss_pred cceeEEeecccchhHHHHHHHHhh-------------------cccCccccccccccccccceecCCceEEecCcccHHH
Confidence 467777777766655555554322 111122222233333333345555544 68899999
Q ss_pred HHHHHHHhcCC----CeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEe
Q 039491 763 KEVIEMLFCRG----VVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLC 838 (1379)
Q Consensus 763 Re~Ve~lF~~G----~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~ 838 (1379)
|+.+...|.+- .--.||+|-+.+.||||-|.+-||. ||+ .++|.-=+|-+=|+=|.|+...-++|-|.
T Consensus 1203 R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVII----fDa----sWNPSyDtQSIFRvyRfGQtKPvyiYRfi 1274 (1567)
T KOG1015|consen 1203 RKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVII----FDA----SWNPSYDTQSIFRVYRFGQTKPVYIYRFI 1274 (1567)
T ss_pred HHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEE----Eec----ccCCccchHHHHHHHhhcCcCceeehhhh
Confidence 99999999873 2237999999999999988877776 999 88999999999999999998888888777
Q ss_pred cCCCCCHHHHHHHHhcC
Q 039491 839 RDEIPGESDLKHIIVGS 855 (1379)
Q Consensus 839 ~~~~~~~~~l~~li~g~ 855 (1379)
....-+...+++-+..+
T Consensus 1275 AqGTmEeKIYkRQVTKq 1291 (1567)
T KOG1015|consen 1275 AQGTMEEKIYKRQVTKQ 1291 (1567)
T ss_pred hcccHHHHHHHHHHhHh
Confidence 66544556666655433
No 176
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.49 E-value=0.0002 Score=87.52 Aligned_cols=68 Identities=21% Similarity=0.253 Sum_probs=59.4
Q ss_pred CCCCCCHHHHHHHHHHHCC-CcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHh
Q 039491 397 FPFELDNFQKEAIYYLENG-DSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFS 464 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~L~~g-~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~ 464 (1379)
|++.+++-|++|+..+... .-.++.+|+|+|||..-...|.++++.+.++++++||.+-+..+..++.
T Consensus 182 ~~~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 182 FNKNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred CCccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 6778999999999998776 4567899999999998888899999999999999999988887777543
No 177
>PRK10536 hypothetical protein; Provisional
Probab=97.49 E-value=0.00027 Score=80.04 Aligned_cols=136 Identities=18% Similarity=0.248 Sum_probs=82.3
Q ss_pred CCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHH-hc-CCcEEEecchHHHHH----------HHHHHH
Q 039491 397 FPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALAT-KH-CTRAVYTAPIKTISN----------QKYRDF 463 (1379)
Q Consensus 397 ~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l-~~-~~raIylsPtkaLsn----------Qk~~~~ 463 (1379)
++.. .+..|..++..+.++..|++.+|+|+|||+.+......++ .. -.+++++-|+..... +|+.-+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~ 134 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPY 134 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHH
Confidence 4444 6899999999999999999999999999998776666555 32 356777777754322 222221
Q ss_pred hc-cc-cEEEEecCcc----cC-CCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCcc
Q 039491 464 SG-KF-DVGLLTGDVS----LR-PEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRH 536 (1379)
Q Consensus 464 ~~-~f-~VglltGdv~----in-~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~ 536 (1379)
-. .+ ....+.|... ++ ....|-|+....+| |.. + +-++||+|||+++. -.....++..++.+
T Consensus 135 ~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymR-----Grt-l-~~~~vIvDEaqn~~----~~~~k~~ltR~g~~ 203 (262)
T PRK10536 135 FRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMR-----GRT-F-ENAVVILDEAQNVT----AAQMKMFLTRLGEN 203 (262)
T ss_pred HHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhc-----CCc-c-cCCEEEEechhcCC----HHHHHHHHhhcCCC
Confidence 11 11 1111111111 11 12334455444332 222 2 23799999999986 35566777788887
Q ss_pred ceEEEec
Q 039491 537 INIVLLS 543 (1379)
Q Consensus 537 vqiIlLS 543 (1379)
.++|+.-
T Consensus 204 sk~v~~G 210 (262)
T PRK10536 204 VTVIVNG 210 (262)
T ss_pred CEEEEeC
Confidence 7777653
No 178
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.47 E-value=0.00074 Score=85.89 Aligned_cols=136 Identities=17% Similarity=0.148 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh----cCCcEEEecchHHHHHHHHHHHhccc-cEEEEecC
Q 039491 401 LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK----HCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGD 475 (1379)
Q Consensus 401 L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~----~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGd 475 (1379)
..++|+.|+.....+.-++|.+++|+|||.+....+...+. ...++++++||---+....+.+.... +.++ ..+
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~-~~~ 231 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL-TDE 231 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc-chh
Confidence 35899999999998889999999999999864333333222 23578889999877777666655433 2221 111
Q ss_pred cccCCCCceeeecHHHHHHHHhc------CcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEec
Q 039491 476 VSLRPEASCLIMTTEILRSMLYR------GADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLS 543 (1379)
Q Consensus 476 v~in~~a~IlV~TpEiL~smL~~------~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLS 543 (1379)
. ......-..|-.+|...... .....-..++||+||+-++. -..+..++..+|++.++|++-
T Consensus 232 ~--~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~~~rlIlvG 299 (615)
T PRK10875 232 Q--KKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPPHARVIFLG 299 (615)
T ss_pred h--hhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcccCCEEEEec
Confidence 1 01111123455555432211 11223356899999999885 455667778888888888763
No 179
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.46 E-value=0.00088 Score=84.97 Aligned_cols=134 Identities=16% Similarity=0.176 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh--c---CCcEEEecchHHHHHHHHHHHhccc-cEEEEecCc
Q 039491 403 NFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK--H---CTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDV 476 (1379)
Q Consensus 403 ~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~--~---~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv 476 (1379)
++|+.|+.....++-++|.++.|+|||.+....+..... + ..++++++||---+....+.+.... .... ..+
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~-~~~- 225 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAA-AEA- 225 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccccc-chh-
Confidence 799999999999999999999999999864433333222 1 2579999999877776666555433 2211 001
Q ss_pred ccCCCCceeeecHHHHHHHHhc------CcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEec
Q 039491 477 SLRPEASCLIMTTEILRSMLYR------GADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLS 543 (1379)
Q Consensus 477 ~in~~a~IlV~TpEiL~smL~~------~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLS 543 (1379)
......+-..|-.+|...... .....-.+++||+||+=++. ...+..++..++++.++|++-
T Consensus 226 -~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~~rlIlvG 293 (586)
T TIGR01447 226 -LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPNTKLILLG 293 (586)
T ss_pred -hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCCCEEEEEC
Confidence 001111224454444332111 01223368999999999886 446777788888888888763
No 180
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.41 E-value=0.0017 Score=83.33 Aligned_cols=120 Identities=18% Similarity=0.155 Sum_probs=85.2
Q ss_pred CCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-----cEEE
Q 039491 397 FPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-----DVGL 471 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-----~Vgl 471 (1379)
.++.+...|.-.--.+..| -+.-+-||-|||+++.+|.....-.|..+.+++..--|+.--...+...| .||+
T Consensus 77 lg~~~~dVQliG~i~lh~g--~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~ 154 (822)
T COG0653 77 LGMRHFDVQLLGGIVLHLG--DIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGV 154 (822)
T ss_pred cCCChhhHHHhhhhhhcCC--ceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHHcCCceee
Confidence 4544446666655555554 58899999999999999988877777778888888888876555555554 7888
Q ss_pred EecCcccCC-----CCceeeecHHHH------HHHHhcCc-ccCCCccEEEEeccCCCC
Q 039491 472 LTGDVSLRP-----EASCLIMTTEIL------RSMLYRGA-DIIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 472 ltGdv~in~-----~a~IlV~TpEiL------~smL~~~~-~~l~~v~lVI~DEaH~l~ 518 (1379)
...+.+... .++|..+|-.-| .+|.+... ...+...+.|+||++-|+
T Consensus 155 ~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 155 ILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred ccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 877765322 368999998544 24555432 345668999999999764
No 181
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.27 E-value=0.0025 Score=83.39 Aligned_cols=124 Identities=19% Similarity=0.175 Sum_probs=80.9
Q ss_pred CCCCCCHHHHHHHHHHHC-CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecC
Q 039491 397 FPFELDNFQKEAIYYLEN-GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGD 475 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~L~~-g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGd 475 (1379)
.+|.|++-|++|+..+.. ++-++|.++.|+|||.+.-..+..+...+.++++++||--.+.... +.. |
T Consensus 349 ~~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~----~~~------g- 417 (744)
T TIGR02768 349 QHYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQ----AES------G- 417 (744)
T ss_pred ccCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHH----hcc------C-
Confidence 467899999999999876 4677899999999998755444334456889999999966554432 211 1
Q ss_pred cccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc-CccceEEEec
Q 039491 476 VSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML-PRHINIVLLS 543 (1379)
Q Consensus 476 v~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L-p~~vqiIlLS 543 (1379)
+--.|...+..-..++...+...++||+||+-++... .+..++... +...++|++-
T Consensus 418 --------~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~----~~~~Ll~~~~~~~~kliLVG 474 (744)
T TIGR02768 418 --------IESRTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSR----QMARVLKEAEEAGAKVVLVG 474 (744)
T ss_pred --------CceeeHHHHHhhhccCcccCCCCcEEEEECcccCCHH----HHHHHHHHHHhcCCEEEEEC
Confidence 0112434442222334445678899999999999733 344555433 3456666654
No 182
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.23 E-value=0.00071 Score=74.83 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHCCCc-EEEEcCCCccHHHHHHHHHHHH--------HhcCCcEEEecchHHHHHHHHHHHhc
Q 039491 401 LDNFQKEAIYYLENGDS-VFVAAHTSAGKTVVAEYAFALA--------TKHCTRAVYTAPIKTISNQKYRDFSG 465 (1379)
Q Consensus 401 L~~~Q~eAI~~L~~g~s-VlV~ApTGSGKTlvae~aI~~~--------l~~~~raIylsPtkaLsnQk~~~~~~ 465 (1379)
|++.|.+|+.++..... .+|.||.|+|||.+...++... ...+.++++++|+.+-+.+..+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 68999999999998887 9999999999997655555555 46789999999999999999999987
No 183
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.21 E-value=0.0012 Score=83.67 Aligned_cols=73 Identities=18% Similarity=0.242 Sum_probs=54.2
Q ss_pred ccCCCCCCHHHHHHH----HHHHCCCcEEEEcCCCccHHHHHHH---HHHHHHh-----------c--------------
Q 039491 395 LDFPFELDNFQKEAI----YYLENGDSVFVAAHTSAGKTVVAEY---AFALATK-----------H-------------- 442 (1379)
Q Consensus 395 ~~~pFeL~~~Q~eAI----~~L~~g~sVlV~ApTGSGKTlvae~---aI~~~l~-----------~-------------- 442 (1379)
-.|||+|++-|..-+ .+|....+.++-.|||+|||+..+- |-.+.++ .
T Consensus 16 V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~ 95 (945)
T KOG1132|consen 16 VEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGE 95 (945)
T ss_pred eeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCC
Confidence 369999999998655 4556778999999999999975433 3222221 0
Q ss_pred --------------CCcEEEecchHHHHHHHHHHHhccc
Q 039491 443 --------------CTRAVYTAPIKTISNQKYRDFSGKF 467 (1379)
Q Consensus 443 --------------~~raIylsPtkaLsnQk~~~~~~~f 467 (1379)
-.+++|-+-|..=..|..+++++..
T Consensus 96 ~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 96 KSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred chhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 2478888888888889999998764
No 184
>PF13245 AAA_19: Part of AAA domain
Probab=97.19 E-value=0.001 Score=61.92 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=42.5
Q ss_pred HHH-HHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc----CCcEEEecchHHHHHHHHHHH
Q 039491 408 AIY-YLENGDSVFVAAHTSAGKTVVAEYAFALATKH----CTRAVYTAPIKTISNQKYRDF 463 (1379)
Q Consensus 408 AI~-~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~----~~raIylsPtkaLsnQk~~~~ 463 (1379)
||. ++..+.-++|.||.|+|||..+.-.+...+.. +.++++++|+++.+++..+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 455 34423345559999999997766666666644 889999999999999988887
No 185
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.17 E-value=0.0033 Score=83.46 Aligned_cols=125 Identities=18% Similarity=0.123 Sum_probs=83.1
Q ss_pred CCCCCCHHHHHHHHHHHCCC-cEEEEcCCCccHHHHHHHHHHHHH-hcCCcEEEecchHHHHHHHHHHHhccccEEEEec
Q 039491 397 FPFELDNFQKEAIYYLENGD-SVFVAAHTSAGKTVVAEYAFALAT-KHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTG 474 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~L~~g~-sVlV~ApTGSGKTlvae~aI~~~l-~~~~raIylsPtkaLsnQk~~~~~~~f~VglltG 474 (1379)
.+|.|++-|++|+..+..+. -++|.++.|+|||.+.- ++...+ ..+.+++.++||---+... .+. .|
T Consensus 343 ~g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~-~~~~~~e~~G~~V~~~ApTGkAA~~L----~e~--tG---- 411 (988)
T PRK13889 343 RGLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLG-VAREAWEAAGYEVRGAALSGIAAENL----EGG--SG---- 411 (988)
T ss_pred cCCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHH-HHHHHHHHcCCeEEEecCcHHHHHHH----hhc--cC----
Confidence 57889999999999998754 57899999999998733 333333 4588999999986555332 221 11
Q ss_pred CcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc-CccceEEEeccc
Q 039491 475 DVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML-PRHINIVLLSAT 545 (1379)
Q Consensus 475 dv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L-p~~vqiIlLSAT 545 (1379)
|--.|...|..-...+...+...++||+||+-++. ...+..++... +...++|++-=+
T Consensus 412 ---------i~a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a~~~garvVLVGD~ 470 (988)
T PRK13889 412 ---------IASRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG----TRQLERVLSHAADAGAKVVLVGDP 470 (988)
T ss_pred ---------cchhhHHHHHhhhcccccccccCcEEEEECcccCC----HHHHHHHHHhhhhCCCEEEEECCH
Confidence 11124444432222344557778999999999987 33556666544 556788887544
No 186
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.15 E-value=0.0027 Score=70.76 Aligned_cols=140 Identities=17% Similarity=0.168 Sum_probs=92.8
Q ss_pred ccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHC---CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEE
Q 039491 371 EAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLEN---GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAV 447 (1379)
Q Consensus 371 ~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~---g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raI 447 (1379)
..|.-...++.++=.+. ..+-+++-|.+....+.+ |.|.+..+-+|.|||.|..=.++..+.++.+.+
T Consensus 3 ~~w~p~~~P~wLl~E~e---------~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~Lv 73 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIE---------SNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLV 73 (229)
T ss_pred CCCCchhChHHHHHHHH---------cCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCCcEE
Confidence 35666555555554443 456799999999988854 678999999999999886545556667776655
Q ss_pred EecchHHHHHHHHHHHhccc----cEEEEe----cCcccC---------------CCCceeeecHHHHHHHHhcC-----
Q 039491 448 YTAPIKTISNQKYRDFSGKF----DVGLLT----GDVSLR---------------PEASCLIMTTEILRSMLYRG----- 499 (1379)
Q Consensus 448 ylsPtkaLsnQk~~~~~~~f----~Vgllt----Gdv~in---------------~~a~IlV~TpEiL~smL~~~----- 499 (1379)
.++=-++|..|.++.+...+ +-.+++ .+...+ ....|+++|||.+.+....+
T Consensus 74 rviVpk~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~ 153 (229)
T PF12340_consen 74 RVIVPKALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQ 153 (229)
T ss_pred EEEcCHHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHH
Confidence 54444899999999999877 222222 222221 13579999999887653321
Q ss_pred --c-----------ccCCCccEEEEeccCCCCC
Q 039491 500 --A-----------DIIRDIEWVIFDEVHYVND 519 (1379)
Q Consensus 500 --~-----------~~l~~v~lVI~DEaH~l~d 519 (1379)
. ..+.+...=|+||+|.+..
T Consensus 154 ~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 154 DGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred hcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 1 1233444568888887653
No 187
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.14 E-value=0.08 Score=64.74 Aligned_cols=118 Identities=16% Similarity=0.085 Sum_probs=73.7
Q ss_pred HHHHHH-hCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEe
Q 039491 676 LINKLS-KKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIH 754 (1379)
Q Consensus 676 Li~~L~-~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavh 754 (1379)
++-.+. ......++||++|--.=-.+-+.|.+.++. .+..
T Consensus 290 iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~s---------------------------------------F~~i 330 (442)
T PF06862_consen 290 ILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENIS---------------------------------------FVQI 330 (442)
T ss_pred HHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCe---------------------------------------EEEe
Confidence 333344 555678999999987777777777643322 2334
Q ss_pred cCCCChHHHHHHHHHhcCCCeeEEEecccc--cccCCCCCceEEEccccccCCcccccCCHHHH---HHHhcccCC-CCC
Q 039491 755 HAGLLPIVKEVIEMLFCRGVVKVLFSTETF--AMGVNAPARTVVFDNLRKFDGREFRQLLPGEY---TQMAGRAGR-RGL 828 (1379)
Q Consensus 755 HggL~~~~Re~Ve~lF~~G~ikVLVATetl--a~GINiPa~tvVI~~~~kfDg~~~rpls~~ey---iQmaGRAGR-rG~ 828 (1379)
|--.++.+-...-..|..|..+||+-|+=+ =+=..+.++..||- |.. |..|.=| +.|.+.... .+.
T Consensus 331 ~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viF----Y~~----P~~p~fY~El~n~~~~~~~~~~~ 402 (442)
T PF06862_consen 331 SEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIF----YGP----PENPQFYSELLNMLDESSGGEVD 402 (442)
T ss_pred cccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEE----ECC----CCChhHHHHHHhhhccccccccc
Confidence 555566666677789999999999999843 24555666666555 777 5555544 444444433 112
Q ss_pred CCcEEEEEEecC
Q 039491 829 DKIGTVVVLCRD 840 (1379)
Q Consensus 829 d~~G~vIil~~~ 840 (1379)
...+.|.++++.
T Consensus 403 ~~~~~~~~lysk 414 (442)
T PF06862_consen 403 AADATVTVLYSK 414 (442)
T ss_pred ccCceEEEEecH
Confidence 233566666653
No 188
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.09 E-value=0.0047 Score=62.32 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=28.4
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIK 453 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtk 453 (1379)
+..+++.+|+|+|||..+...+......+..++++....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~ 57 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASD 57 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhh
Confidence 678999999999999876655555544456666665543
No 189
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.0083 Score=73.32 Aligned_cols=129 Identities=21% Similarity=0.247 Sum_probs=78.7
Q ss_pred EcCCCccHHHHHHHHHHHHHhcCC-cEEEecchHHHHHHHHHHHhcc------ccEEEEecCcc-----------cCCCC
Q 039491 421 AAHTSAGKTVVAEYAFALATKHCT-RAVYTAPIKTISNQKYRDFSGK------FDVGLLTGDVS-----------LRPEA 482 (1379)
Q Consensus 421 ~ApTGSGKTlvae~aI~~~l~~~~-raIylsPtkaLsnQk~~~~~~~------f~VglltGdv~-----------in~~a 482 (1379)
-+.||||||++..-.|+.....|. .-|+.|..-....-....|... |.-.+..+|.. .+...
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehnd~i 82 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHNDAI 82 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccCCce
Confidence 478999999987777888777764 4566665544443333333221 11112222222 23456
Q ss_pred ceeeecHHHHHHHHhcCc------ccCCCccEE-EEeccCCCCCcc---------chhHHHHHHHHc---CccceEEEec
Q 039491 483 SCLIMTTEILRSMLYRGA------DIIRDIEWV-IFDEVHYVNDIE---------RGVVWEEVIIML---PRHINIVLLS 543 (1379)
Q Consensus 483 ~IlV~TpEiL~smL~~~~------~~l~~v~lV-I~DEaH~l~d~~---------rG~v~eeii~~L---p~~vqiIlLS 543 (1379)
.|..+|+..|.+.+.+.. ..+.+..+| +-||+|+++... --+.|+.++... .+.--++.+|
T Consensus 83 ei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~lef~ 162 (812)
T COG3421 83 EIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLLEFS 162 (812)
T ss_pred EEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceeehhh
Confidence 799999999988877643 234455555 569999997432 234577765442 2445678899
Q ss_pred ccCCCh
Q 039491 544 ATVPNT 549 (1379)
Q Consensus 544 ATvpN~ 549 (1379)
||++..
T Consensus 163 at~~k~ 168 (812)
T COG3421 163 ATIPKE 168 (812)
T ss_pred hcCCcc
Confidence 998843
No 190
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.91 E-value=0.0024 Score=68.44 Aligned_cols=119 Identities=22% Similarity=0.296 Sum_probs=72.9
Q ss_pred hCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChH
Q 039491 682 KKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPI 761 (1379)
Q Consensus 682 ~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~ 761 (1379)
+...+.++||++|.+..+.+...+...... .++.++.- ...
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~-------------------------------------~~~~v~~q--~~~ 46 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEE-------------------------------------KGIPVFVQ--GSK 46 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E--------------------------------------ETSCEEES--TCC
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhccc-------------------------------------ccceeeec--Ccc
Confidence 334589999999999999999888653210 11222332 255
Q ss_pred HHHHHHHHhcCCCeeEEEecc--cccccCCCCC---ceEEEccccccCCc------------------ccc----cCCHH
Q 039491 762 VKEVIEMLFCRGVVKVLFSTE--TFAMGVNAPA---RTVVFDNLRKFDGR------------------EFR----QLLPG 814 (1379)
Q Consensus 762 ~Re~Ve~lF~~G~ikVLVATe--tla~GINiPa---~tvVI~~~~kfDg~------------------~~r----pls~~ 814 (1379)
.+..+.+.|+++.-.||+|+. .+++|||+|+ +.|||.+.. |-.. .+. +....
T Consensus 47 ~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glP-fp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (167)
T PF13307_consen 47 SRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLP-FPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIR 125 (167)
T ss_dssp HHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES------TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHH
T ss_pred hHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheeeecCCC-CCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHH
Confidence 677888999999999999999 9999999994 355665554 3211 011 11235
Q ss_pred HHHHHhcccCCCCCCCcEEEEEEecCCC
Q 039491 815 EYTQMAGRAGRRGLDKIGTVVVLCRDEI 842 (1379)
Q Consensus 815 eyiQmaGRAGRrG~d~~G~vIil~~~~~ 842 (1379)
...|.+||+-|...| .|.++++ ++..
T Consensus 126 ~l~Qa~GR~iR~~~D-~g~i~ll-D~R~ 151 (167)
T PF13307_consen 126 KLKQAIGRLIRSEDD-YGVIILL-DSRF 151 (167)
T ss_dssp HHHHHHHCC--STT--EEEEEEE-SGGG
T ss_pred HHhhhcCcceeccCC-cEEEEEE-cCcc
Confidence 567999999998876 5666654 4433
No 191
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.85 E-value=0.0034 Score=62.55 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=51.9
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRS 494 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL~s 494 (1379)
+..+++.+|+|+|||..+...+......+..++++.+...............+ . .+.....-+...+.+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~ 72 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIV------G---GKKASGSGELRLRLALA 72 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhh------h---ccCCCCCHHHHHHHHHH
Confidence 56899999999999987654444333333468888777554433222210000 0 00011111222333333
Q ss_pred HHhcCcccCCCccEEEEeccCCCCCccch
Q 039491 495 MLYRGADIIRDIEWVIFDEVHYVNDIERG 523 (1379)
Q Consensus 495 mL~~~~~~l~~v~lVI~DEaH~l~d~~rG 523 (1379)
+..... ..+|++||++.+.+....
T Consensus 73 ~~~~~~-----~~viiiDei~~~~~~~~~ 96 (148)
T smart00382 73 LARKLK-----PDVLILDEITSLLDAEQE 96 (148)
T ss_pred HHHhcC-----CCEEEEECCcccCCHHHH
Confidence 333222 689999999999875433
No 192
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.84 E-value=0.011 Score=79.30 Aligned_cols=126 Identities=18% Similarity=0.090 Sum_probs=85.3
Q ss_pred CCCCCCHHHHHHHHHHHC-CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecC
Q 039491 397 FPFELDNFQKEAIYYLEN-GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGD 475 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~L~~-g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGd 475 (1379)
.+|.|++-|++|+.++.. ++-++|.++-|+|||.+.-.+...+-..|.+++-++||-.-+... .+.. |
T Consensus 378 ~~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L----~e~~--G----- 446 (1102)
T PRK13826 378 RHARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGL----EKEA--G----- 446 (1102)
T ss_pred cCCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHH----HHhh--C-----
Confidence 468899999999999854 556889999999999876554444446788999999986555443 2211 0
Q ss_pred cccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcC-ccceEEEeccc
Q 039491 476 VSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLP-RHINIVLLSAT 545 (1379)
Q Consensus 476 v~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp-~~vqiIlLSAT 545 (1379)
|--.|...+..-...+...+..-++||+||+.++. ...+..++...+ ...++|++-=+
T Consensus 447 --------i~a~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 447 --------IQSRTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----SRQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred --------CCeeeHHHHHhhhccCccCCCCCcEEEEECcccCC----HHHHHHHHHHHHhcCCEEEEECCH
Confidence 11234343321122344556777899999999886 455667777665 56788887544
No 193
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.83 E-value=0.0011 Score=67.17 Aligned_cols=114 Identities=17% Similarity=0.234 Sum_probs=54.0
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhc-----CCcEE-EecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeee
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKH-----CTRAV-YTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIM 487 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~-----~~raI-ylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~ 487 (1379)
++..++|.|++|+|||.++...+...... ...++ +.+|...-....++.+.+.+.... .. -.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~-------~~-----~~ 70 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPL-------KS-----RQ 70 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SS-------SS-----TS
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccc-------cc-----cC
Confidence 35678999999999999876665554431 33333 334433312333333333221000 00 23
Q ss_pred cHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcC-ccceEEEec
Q 039491 488 TTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLP-RHINIVLLS 543 (1379)
Q Consensus 488 TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp-~~vqiIlLS 543 (1379)
|...+.+.+.+.-.. ....+||+||+|++. ....++.+..... ..+++|+..
T Consensus 71 ~~~~l~~~~~~~l~~-~~~~~lviDe~~~l~---~~~~l~~l~~l~~~~~~~vvl~G 123 (131)
T PF13401_consen 71 TSDELRSLLIDALDR-RRVVLLVIDEADHLF---SDEFLEFLRSLLNESNIKVVLVG 123 (131)
T ss_dssp -HHHHHHHHHHHHHH-CTEEEEEEETTHHHH---THHHHHHHHHHTCSCBEEEEEEE
T ss_pred CHHHHHHHHHHHHHh-cCCeEEEEeChHhcC---CHHHHHHHHHHHhCCCCeEEEEE
Confidence 344443433321111 112789999999984 1555555544443 345544443
No 194
>PRK06526 transposase; Provisional
Probab=96.71 E-value=0.0073 Score=69.15 Aligned_cols=106 Identities=13% Similarity=0.092 Sum_probs=60.8
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHH
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEI 491 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEi 491 (1379)
+..+.++++.||+|+|||..+......+...+.+++|+... .|.++...... ..+...
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~-~l~~~l~~~~~---------------------~~~~~~ 152 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAA-QWVARLAAAHH---------------------AGRLQA 152 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHH-HHHHHHHHHHh---------------------cCcHHH
Confidence 56788999999999999988765555566778888776543 34444321110 011111
Q ss_pred HHHHHhcCcccCCCccEEEEeccCCCCCccch-hHHHHHHHHcCccceEEEecccC
Q 039491 492 LRSMLYRGADIIRDIEWVIFDEVHYVNDIERG-VVWEEVIIMLPRHINIVLLSATV 546 (1379)
Q Consensus 492 L~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG-~v~eeii~~Lp~~vqiIlLSATv 546 (1379)
. +. .+.+.++||+||+|++.....+ ..+-.++...-.+..+|+.|...
T Consensus 153 ~---l~----~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~ 201 (254)
T PRK06526 153 E---LV----KLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKP 201 (254)
T ss_pred H---HH----HhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 1 11 1346789999999998532212 12233332222234567766663
No 195
>PRK08181 transposase; Validated
Probab=96.70 E-value=0.019 Score=66.15 Aligned_cols=90 Identities=17% Similarity=0.230 Sum_probs=57.0
Q ss_pred CCHHHHHHHH----HHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCc
Q 039491 401 LDNFQKEAIY----YLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDV 476 (1379)
Q Consensus 401 L~~~Q~eAI~----~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv 476 (1379)
++..|..++. .+..++++++.+|+|+|||..+.-....+..++.+++|+. ...|.++.......
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-~~~L~~~l~~a~~~----------- 155 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-TTDLVQKLQVARRE----------- 155 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-HHHHHHHHHHHHhC-----------
Confidence 4566666663 3467889999999999999876544444456777787765 34555544221110
Q ss_pred ccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCC
Q 039491 477 SLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVND 519 (1379)
Q Consensus 477 ~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d 519 (1379)
.+.+.+.. .+.+.+++|+||++++..
T Consensus 156 ----------~~~~~~l~-------~l~~~dLLIIDDlg~~~~ 181 (269)
T PRK08181 156 ----------LQLESAIA-------KLDKFDLLILDDLAYVTK 181 (269)
T ss_pred ----------CcHHHHHH-------HHhcCCEEEEeccccccC
Confidence 12222222 235678999999998864
No 196
>PRK04296 thymidine kinase; Provisional
Probab=96.61 E-value=0.0044 Score=67.78 Aligned_cols=87 Identities=14% Similarity=0.173 Sum_probs=52.2
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecch---HHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPI---KTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEI 491 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPt---kaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEi 491 (1379)
|.-+++.+|+|+|||..+.-.+..+..++.+++|+-|. +.... .+.. ..| ..+ .+ +.+.....
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~----~i~~--~lg-----~~~--~~-~~~~~~~~ 67 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEG----KVVS--RIG-----LSR--EA-IPVSSDTD 67 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCC----cEec--CCC-----Ccc--cc-eEeCChHH
Confidence 44578999999999988777777777788899988662 11100 0111 111 111 11 22344444
Q ss_pred HHHHHhcCcccCCCccEEEEeccCCCC
Q 039491 492 LRSMLYRGADIIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 492 L~smL~~~~~~l~~v~lVI~DEaH~l~ 518 (1379)
+...+.. .-.++++||+||+|.+.
T Consensus 68 ~~~~~~~---~~~~~dvviIDEaq~l~ 91 (190)
T PRK04296 68 IFELIEE---EGEKIDCVLIDEAQFLD 91 (190)
T ss_pred HHHHHHh---hCCCCCEEEEEccccCC
Confidence 4444433 23578999999999874
No 197
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.45 E-value=0.0059 Score=70.94 Aligned_cols=94 Identities=15% Similarity=0.066 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcC----CcEEEecchHHHHHHHHHHHhccc-cEEEEe-c
Q 039491 401 LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHC----TRAVYTAPIKTISNQKYRDFSGKF-DVGLLT-G 474 (1379)
Q Consensus 401 L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~----~raIylsPtkaLsnQk~~~~~~~f-~Vgllt-G 474 (1379)
|++-|.++|.+ ...+++|.|..|||||.+...-++..+.++ .+++++++|++.+++...++...+ ..+... .
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~~~ 78 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQESSD 78 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCCTT
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCcccccccc
Confidence 57889999988 566899999999999998877777776543 789999999999999988888754 111000 0
Q ss_pred Cc----ccCCCCceeeecHHHHHHHH
Q 039491 475 DV----SLRPEASCLIMTTEILRSML 496 (1379)
Q Consensus 475 dv----~in~~a~IlV~TpEiL~smL 496 (1379)
+. .......+.|+|-..+...+
T Consensus 79 ~~~~~~~~~~~~~~~i~T~hsf~~~l 104 (315)
T PF00580_consen 79 NERLRRQLSNIDRIYISTFHSFCYRL 104 (315)
T ss_dssp -HHHHHHHHHCTTSEEEEHHHHHHHH
T ss_pred cccccccccccchheeehhhhhhhhh
Confidence 00 00012457789987665433
No 198
>PHA02533 17 large terminase protein; Provisional
Probab=96.39 E-value=0.0087 Score=75.29 Aligned_cols=141 Identities=11% Similarity=0.205 Sum_probs=91.5
Q ss_pred cCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHH-HHHHHHH-hcCCcEEEecchHHHHHHHHHHHhccc------
Q 039491 396 DFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAE-YAFALAT-KHCTRAVYTAPIKTISNQKYRDFSGKF------ 467 (1379)
Q Consensus 396 ~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae-~aI~~~l-~~~~raIylsPtkaLsnQk~~~~~~~f------ 467 (1379)
.-||.|+|+|++.+..+..++-.++..+=..|||.++. +++..++ ..+..+++++|++.-|...++.++..+
T Consensus 55 ~~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l 134 (534)
T PHA02533 55 TIKVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPDF 134 (534)
T ss_pred ceecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHH
Confidence 35899999999999888667777889999999998755 4554444 566799999999999999998887654
Q ss_pred -cEEEEec-C--cccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCc--cceEEE
Q 039491 468 -DVGLLTG-D--VSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPR--HINIVL 541 (1379)
Q Consensus 468 -~VglltG-d--v~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~--~vqiIl 541 (1379)
..++... . ......+.|.+.|..- .. .+| ....++|+||+|.+.+. ..+|..+.-.+.. ..+++.
T Consensus 135 ~~~~i~~~~~~~I~l~NGS~I~~lss~~-~t--~rG----~~~~~liiDE~a~~~~~--~e~~~ai~p~lasg~~~r~ii 205 (534)
T PHA02533 135 LQPGIVEWNKGSIELENGSKIGAYASSP-DA--VRG----NSFAMIYIDECAFIPNF--IDFWLAIQPVISSGRSSKIII 205 (534)
T ss_pred hhcceeecCccEEEeCCCCEEEEEeCCC-Cc--cCC----CCCceEEEeccccCCCH--HHHHHHHHHHHHcCCCceEEE
Confidence 1222111 1 1112234444444321 00 011 24578999999988652 4666666555543 245666
Q ss_pred eccc
Q 039491 542 LSAT 545 (1379)
Q Consensus 542 LSAT 545 (1379)
.|.+
T Consensus 206 iSTp 209 (534)
T PHA02533 206 TSTP 209 (534)
T ss_pred EECC
Confidence 6665
No 199
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.35 E-value=0.01 Score=76.32 Aligned_cols=67 Identities=21% Similarity=0.206 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHCC-CcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhcc
Q 039491 400 ELDNFQKEAIYYLENG-DSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGK 466 (1379)
Q Consensus 400 eL~~~Q~eAI~~L~~g-~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~ 466 (1379)
.|++.|++|+..+... ..++|.+|+|+|||.+..-.+.+++..+.++++++|+..-+.+....+.+.
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 5899999999998765 678899999999998877777777888899999999999999998888764
No 200
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.32 E-value=0.016 Score=67.85 Aligned_cols=135 Identities=21% Similarity=0.232 Sum_probs=88.8
Q ss_pred ccCCCC-CCHHHHHHHHHHHCCC--cEEEEcCCCccHHHHHHHHHHHHH---hcCCcEEEecchHHHHHHHHHHHhcccc
Q 039491 395 LDFPFE-LDNFQKEAIYYLENGD--SVFVAAHTSAGKTVVAEYAFALAT---KHCTRAVYTAPIKTISNQKYRDFSGKFD 468 (1379)
Q Consensus 395 ~~~pFe-L~~~Q~eAI~~L~~g~--sVlV~ApTGSGKTlvae~aI~~~l---~~~~raIylsPtkaLsnQk~~~~~~~f~ 468 (1379)
..|+.. .+..|.-|++.++..+ =|.+.+.-|+|||+.|+-|-+... +...++|++=|+..+-. +
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~----------d 291 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGE----------D 291 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCccc----------c
Confidence 458888 4678888999887664 467889999999998766644433 34578999988876642 4
Q ss_pred EEEEecCcc--cCCC-----------CceeeecHHHHHHHHhcCcccCCC----------ccEEEEeccCCCCCccchhH
Q 039491 469 VGLLTGDVS--LRPE-----------ASCLIMTTEILRSMLYRGADIIRD----------IEWVIFDEVHYVNDIERGVV 525 (1379)
Q Consensus 469 VglltGdv~--in~~-----------a~IlV~TpEiL~smL~~~~~~l~~----------v~lVI~DEaH~l~d~~rG~v 525 (1379)
+|.+-|... +.|- .+.-=|+-++|..++.++...+.. =.|||+|||..+- -..
T Consensus 292 IGfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT----phe 367 (436)
T COG1875 292 IGFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT----PHE 367 (436)
T ss_pred cCcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC----HHH
Confidence 555555432 1110 011123355666665554322111 2589999999986 556
Q ss_pred HHHHHHHcCccceEEEec
Q 039491 526 WEEVIIMLPRHINIVLLS 543 (1379)
Q Consensus 526 ~eeii~~Lp~~vqiIlLS 543 (1379)
+.-++..+.+..+||++.
T Consensus 368 ikTiltR~G~GsKIVl~g 385 (436)
T COG1875 368 LKTILTRAGEGSKIVLTG 385 (436)
T ss_pred HHHHHHhccCCCEEEEcC
Confidence 777888888888888874
No 201
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.076 Score=64.48 Aligned_cols=126 Identities=19% Similarity=0.259 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHCCCcEEEEcC-CCccHHH--HHHH-HHHHHH-----------h-------------------cCCcE
Q 039491 401 LDNFQKEAIYYLENGDSVFVAAH-TSAGKTV--VAEY-AFALAT-----------K-------------------HCTRA 446 (1379)
Q Consensus 401 L~~~Q~eAI~~L~~g~sVlV~Ap-TGSGKTl--vae~-aI~~~l-----------~-------------------~~~ra 446 (1379)
+++.|++.+..+.+.++++..-. -+.|+-. +|.+ ++-+.+ + ..++|
T Consensus 217 ltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRpkV 296 (698)
T KOG2340|consen 217 LTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRPKV 296 (698)
T ss_pred chHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCceE
Confidence 79999999999999998875322 2445533 2222 222222 0 02589
Q ss_pred EEecchHHHHHHHHHHHhccc---c-----E-------EEEecCccc---------------------------------
Q 039491 447 VYTAPIKTISNQKYRDFSGKF---D-----V-------GLLTGDVSL--------------------------------- 478 (1379)
Q Consensus 447 IylsPtkaLsnQk~~~~~~~f---~-----V-------glltGdv~i--------------------------------- 478 (1379)
++++|+|+-|-.....+...+ + | |-+.|+...
T Consensus 297 LivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftkKt 376 (698)
T KOG2340|consen 297 LIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTKKT 376 (698)
T ss_pred EEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHHHH
Confidence 999999999988888777653 1 1 122221110
Q ss_pred ------CCCCceeeecHHHHHHHHhc------CcccCCCccEEEEeccCCCCCccchhHHHHHH
Q 039491 479 ------RPEASCLIMTTEILRSMLYR------GADIIRDIEWVIFDEVHYVNDIERGVVWEEVI 530 (1379)
Q Consensus 479 ------n~~a~IlV~TpEiL~smL~~------~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii 530 (1379)
--.++||||+|=-|+-.+.+ ..+.++.++++|+|-+|-+. ...||.++
T Consensus 377 ikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l----~QNwEhl~ 436 (698)
T KOG2340|consen 377 IKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIML----MQNWEHLL 436 (698)
T ss_pred HHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHH----HhhHHHHH
Confidence 01368999999888766652 34678899999999999876 44577765
No 202
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.13 E-value=0.0092 Score=71.92 Aligned_cols=108 Identities=19% Similarity=0.284 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHH------HCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHH--HHHHhccccEEE
Q 039491 400 ELDNFQKEAIYYL------ENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQK--YRDFSGKFDVGL 471 (1379)
Q Consensus 400 eL~~~Q~eAI~~L------~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk--~~~~~~~f~Vgl 471 (1379)
+|++-|++++..+ .++.+++|.++-|+|||.+.-..+......+..+++++||-.-|... -..+...|.+++
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~ 80 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPI 80 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCccc
Confidence 3678899998887 77889999999999999986555544445567899999997766554 233333343332
Q ss_pred EecCcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCC
Q 039491 472 LTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVND 519 (1379)
Q Consensus 472 ltGdv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d 519 (1379)
-.. ....+ .++... .....++.++++|+||+=++..
T Consensus 81 ~~~-----~~~~~---~~~~~~----~~~~~l~~~~~lIiDEism~~~ 116 (364)
T PF05970_consen 81 NNN-----EKSQC---KISKNS----RLRERLRKADVLIIDEISMVSA 116 (364)
T ss_pred ccc-----ccccc---cccccc----hhhhhhhhheeeecccccchhH
Confidence 211 11111 111111 1123578899999999998864
No 203
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.12 E-value=0.018 Score=74.40 Aligned_cols=140 Identities=17% Similarity=0.237 Sum_probs=94.0
Q ss_pred CCCHHHHHHHHHH----HCCCcEEEEcCCCccHHHH--HHHHHHHHH-hcCCcEEEecchHHHHHHHHHHHhccc---cE
Q 039491 400 ELDNFQKEAIYYL----ENGDSVFVAAHTSAGKTVV--AEYAFALAT-KHCTRAVYTAPIKTISNQKYRDFSGKF---DV 469 (1379)
Q Consensus 400 eL~~~Q~eAI~~L----~~g~sVlV~ApTGSGKTlv--ae~aI~~~l-~~~~raIylsPtkaLsnQk~~~~~~~f---~V 469 (1379)
.|+.||+..++.+ +++-|.|++-..|-|||+- .++|-+.+- .+-+-=+|++||-.+.| |--+|+++. +|
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLn-WEMElKRwcPglKI 693 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILN-WEMELKRWCPGLKI 693 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhh-hhHHHhhhCCcceE
Confidence 4799999999886 5677899999999999963 333322221 23355789999987766 445555554 67
Q ss_pred EEEecCccc---------CCC-CceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceE
Q 039491 470 GLLTGDVSL---------RPE-ASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINI 539 (1379)
Q Consensus 470 glltGdv~i---------n~~-a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqi 539 (1379)
-.+.|...- .++ .+|.|+++..+..-+. +..-+++.++|+||+|+|.++ +...|+.++..-. -+.
T Consensus 694 LTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~--AFkrkrWqyLvLDEaqnIKnf-ksqrWQAllnfns--qrR 768 (1958)
T KOG0391|consen 694 LTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLT--AFKRKRWQYLVLDEAQNIKNF-KSQRWQALLNFNS--QRR 768 (1958)
T ss_pred eeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHH--HHHhhccceeehhhhhhhcch-hHHHHHHHhccch--hhe
Confidence 777776552 223 3566666655543322 223357899999999999875 5777988775433 356
Q ss_pred EEeccc
Q 039491 540 VLLSAT 545 (1379)
Q Consensus 540 IlLSAT 545 (1379)
++|+.|
T Consensus 769 LLLtgT 774 (1958)
T KOG0391|consen 769 LLLTGT 774 (1958)
T ss_pred eeecCC
Confidence 777777
No 204
>PRK14974 cell division protein FtsY; Provisional
Probab=95.96 E-value=0.095 Score=62.39 Aligned_cols=123 Identities=12% Similarity=0.121 Sum_probs=66.5
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecc--hHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAP--IKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILR 493 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsP--tkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL~ 493 (1379)
.-+++++++|+|||.+..-.......++.+++++.. .|+-+..+.+.+...+.+-++.+....++ ...+.
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp--------~~v~~ 212 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADP--------AAVAY 212 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCH--------HHHHH
Confidence 467899999999998654443444455667766543 23333333444444443333322211111 11222
Q ss_pred HHHhcCcccCCCccEEEEeccCCCCCc-cchhHHHHHHHHcCccceEEEecccCCC
Q 039491 494 SMLYRGADIIRDIEWVIFDEVHYVNDI-ERGVVWEEVIIMLPRHINIVLLSATVPN 548 (1379)
Q Consensus 494 smL~~~~~~l~~v~lVI~DEaH~l~d~-~rG~v~eeii~~Lp~~vqiIlLSATvpN 548 (1379)
+.+... ..++.++||+|.++++... ..-..+..+...+.++..++.++||..+
T Consensus 213 ~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 213 DAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN 266 (336)
T ss_pred HHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch
Confidence 222111 1245689999999998632 2222333444445667778999998764
No 205
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=95.62 E-value=2.6 Score=53.67 Aligned_cols=114 Identities=20% Similarity=0.146 Sum_probs=82.5
Q ss_pred ecCCCChHHHHHHHHHhcC--CC-eeEEEecccccccCCCC-CceEEEccccccCCcccccCCHHHHHHHhcccCCCCCC
Q 039491 754 HHAGLLPIVKEVIEMLFCR--GV-VKVLFSTETFAMGVNAP-ARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLD 829 (1379)
Q Consensus 754 hHggL~~~~Re~Ve~lF~~--G~-ikVLVATetla~GINiP-a~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d 829 (1379)
..|..+...|+..+..|.+ |. .-+|++|.....|||+= +-.+|| ||. .+++.-=.|.+-|.-|.|..
T Consensus 767 ldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~i-----fda----~wnpchdaqavcRvyrYGQ~ 837 (1387)
T KOG1016|consen 767 LDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCII-----FDA----CWNPCHDAQAVCRVYRYGQQ 837 (1387)
T ss_pred ccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEE-----EEe----ecCccccchhhhhhhhhcCc
Confidence 4566677889999999986 33 36889999999999984 334444 666 67777778999999999999
Q ss_pred CcEEEEEEecCCCCCHHHHHHHHhcC------CCcccccccccHHHHHHHHhh
Q 039491 830 KIGTVVVLCRDEIPGESDLKHIIVGS------ATRLESQFRLTYIMILHLLRV 876 (1379)
Q Consensus 830 ~~G~vIil~~~~~~~~~~l~~li~g~------~~~L~S~f~lty~miLnLlr~ 876 (1379)
....||.++-+...+.+.+.+-|... .+.++-...++..-+-||+..
T Consensus 838 KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~np~an~s~Ke~enLl~~ 890 (1387)
T KOG1016|consen 838 KPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDANPDANISQKELENLLMY 890 (1387)
T ss_pred CceeEEeehhhhhhHHHHHHHHHhhccchhhhhcccCccccccHHHHHHHhhh
Confidence 88999988876554666666665533 223334455666777777743
No 206
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.54 E-value=0.17 Score=57.63 Aligned_cols=77 Identities=14% Similarity=0.238 Sum_probs=46.6
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHH-HhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALA-TKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRS 494 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~-l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL~s 494 (1379)
..+++.+++|+|||..+. +|+.. ...+..++|+ +...|. ..++..|. .. -.+.+.+..
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~~g~~v~~i-t~~~l~----~~l~~~~~----------~~-----~~~~~~~l~ 158 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLLRGKSVLII-TVADIM----SAMKDTFS----------NS-----ETSEEQLLN 158 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHhcCCeEEEE-EHHHHH----HHHHHHHh----------hc-----cccHHHHHH
Confidence 478999999999998764 44444 4556777766 333343 33333220 00 023333333
Q ss_pred HHhcCcccCCCccEEEEeccCCCCCc
Q 039491 495 MLYRGADIIRDIEWVIFDEVHYVNDI 520 (1379)
Q Consensus 495 mL~~~~~~l~~v~lVI~DEaH~l~d~ 520 (1379)
. +.++++|||||++.....
T Consensus 159 ~-------l~~~dlLvIDDig~~~~s 177 (244)
T PRK07952 159 D-------LSNVDLLVIDEIGVQTES 177 (244)
T ss_pred H-------hccCCEEEEeCCCCCCCC
Confidence 2 457889999999987643
No 207
>PRK08116 hypothetical protein; Validated
Probab=95.47 E-value=0.2 Score=57.98 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=29.2
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHH-hcCCcEEEecchHHHHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALAT-KHCTRAVYTAPIKTISNQKYR 461 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l-~~~~raIylsPtkaLsnQk~~ 461 (1379)
..+++.+++|+|||..+. +|+..+ .++..++|+. ...|.++...
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~~~~~v~~~~-~~~ll~~i~~ 159 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIEKGVPVIFVN-FPQLLNRIKS 159 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHHcCCeEEEEE-HHHHHHHHHH
Confidence 459999999999998765 455544 4566666664 4455544433
No 208
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.37 E-value=0.12 Score=62.75 Aligned_cols=124 Identities=12% Similarity=0.096 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHH-Hh---cCCcEE-Eec-chHHHHHHHHHHHhccccEEEEecCcccCCCCceeeec
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALA-TK---HCTRAV-YTA-PIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMT 488 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~-l~---~~~raI-yls-PtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~T 488 (1379)
+..+++++|||+|||.++.-..+.. +. ++.++. +.+ +.++-+..+.+.+.+..++-+ ..+.+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv------------~~~~~ 241 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV------------KAIES 241 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce------------EeeCc
Confidence 4578899999999998754332222 21 233333 333 445555555666665442222 12334
Q ss_pred HHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHH---HHHcC-ccceEEEecccCCChHHHHHHHh
Q 039491 489 TEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEV---IIMLP-RHINIVLLSATVPNTVEFADWIG 557 (1379)
Q Consensus 489 pEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eei---i~~Lp-~~vqiIlLSATvpN~~efa~wl~ 557 (1379)
+..+...+.+ +++.++||+|++.+.... ...+.++ +.... +.-.++.||||.. ..++.+.+.
T Consensus 242 ~~~l~~~L~~----~~~~DlVLIDTaGr~~~~--~~~l~el~~~l~~~~~~~e~~LVlsat~~-~~~~~~~~~ 307 (388)
T PRK12723 242 FKDLKEEITQ----SKDFDLVLVDTIGKSPKD--FMKLAEMKELLNACGRDAEFHLAVSSTTK-TSDVKEIFH 307 (388)
T ss_pred HHHHHHHHHH----hCCCCEEEEcCCCCCccC--HHHHHHHHHHHHhcCCCCeEEEEEcCCCC-HHHHHHHHH
Confidence 5556555533 467899999999987532 2223333 33333 3356799999975 334444444
No 209
>PRK08727 hypothetical protein; Validated
Probab=95.25 E-value=0.088 Score=59.53 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=26.6
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA 450 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls 450 (1379)
..+++.+++|+|||-.+......+..++.+++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 45999999999999776544444556678888875
No 210
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.23 E-value=0.16 Score=73.00 Aligned_cols=134 Identities=13% Similarity=0.103 Sum_probs=77.3
Q ss_pred CCCCCCHHHHHHHHHHHCC--CcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEEEe
Q 039491 397 FPFELDNFQKEAIYYLENG--DSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLT 473 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~L~~g--~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~Vgllt 473 (1379)
.+|.|++-|++|+..+... +-.+|.++.|+|||.+.--.+..+-..|.+++.++|+-.-+.+..+.....- .+.-+.
T Consensus 426 ~~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e~~g~~A~Ti~~~l 505 (1960)
T TIGR02760 426 SEFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQKIPRLASTFITWV 505 (1960)
T ss_pred ccCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHhcchhhhHHHHH
Confidence 3678999999999998764 5678999999999987544444444568899999999766555443321100 000000
Q ss_pred cCcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc-CccceEEEe
Q 039491 474 GDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML-PRHINIVLL 542 (1379)
Q Consensus 474 Gdv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L-p~~vqiIlL 542 (1379)
+. ...+ .-..|...+ + .....+..-++||+||+-++... .+..++... +...++|++
T Consensus 506 ~~-l~~~---~~~~tv~~f---l-~~~~~l~~~~vlIVDEAsMl~~~----~~~~Ll~~a~~~garvVlv 563 (1960)
T TIGR02760 506 KN-LFND---DQDHTVQGL---L-DKSSPFSNKDIFVVDEANKLSNN----ELLKLIDKAEQHNSKLILL 563 (1960)
T ss_pred Hh-hccc---ccchhHHHh---h-cccCCCCCCCEEEEECCCCCCHH----HHHHHHHHHhhcCCEEEEE
Confidence 00 0000 001122222 2 22233456789999999988633 344444333 234555544
No 211
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.21 E-value=0.15 Score=57.19 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=26.3
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecc
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAP 451 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsP 451 (1379)
.+..+++.+++|+|||..+..........+..++|+..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 34689999999999998765443344455666666654
No 212
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=95.16 E-value=0.064 Score=68.41 Aligned_cols=131 Identities=15% Similarity=0.144 Sum_probs=79.0
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHHhc--CCcEEEecchHHHHHHH---HHHHhccc--------cEEEEecCc------
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALATKH--CTRAVYTAPIKTISNQK---YRDFSGKF--------DVGLLTGDV------ 476 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l~~--~~raIylsPtkaLsnQk---~~~~~~~f--------~VglltGdv------ 476 (1379)
-++=|.+.||+|||.||.-.|...-+. -.+-|+++|+.|.-.-+ .+...+.| +.-.++-|.
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~~~ 154 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEKFK 154 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHHHh
Confidence 367799999999999998777665443 36899999999985542 23333333 222222221
Q ss_pred -ccCCCCceeeecHHHHH------HHHhcCcccCCC--------------c-cEEEEeccCCCCCccchhHHHHHHHHcC
Q 039491 477 -SLRPEASCLIMTTEILR------SMLYRGADIIRD--------------I-EWVIFDEVHYVNDIERGVVWEEVIIMLP 534 (1379)
Q Consensus 477 -~in~~a~IlV~TpEiL~------smL~~~~~~l~~--------------v-~lVI~DEaH~l~d~~rG~v~eeii~~Lp 534 (1379)
..+....++++|...+. +|+...+....+ + -+||+||=|.+... ...|..+-..-|
T Consensus 155 ~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~--~k~~~~i~~l~p 232 (985)
T COG3587 155 FKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD--DKTYGAIKQLNP 232 (985)
T ss_pred hccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc--hHHHHHHHhhCc
Confidence 12344677888876552 344332221111 1 27999999999742 344544433333
Q ss_pred ccceEEEecccCCChH
Q 039491 535 RHINIVLLSATVPNTV 550 (1379)
Q Consensus 535 ~~vqiIlLSATvpN~~ 550 (1379)
.-++=++||.++..
T Consensus 233 --l~ilRfgATfkd~y 246 (985)
T COG3587 233 --LLILRFGATFKDEY 246 (985)
T ss_pred --eEEEEecccchhhh
Confidence 45777999976543
No 213
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.15 E-value=0.048 Score=56.52 Aligned_cols=41 Identities=22% Similarity=0.199 Sum_probs=31.6
Q ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHH
Q 039491 418 VFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQ 458 (1379)
Q Consensus 418 VlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQ 458 (1379)
++|.+++|+|||..+...+......+.+++|+..-..+...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~ 42 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEEL 42 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHH
Confidence 68999999999998766666666678889998776555443
No 214
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.12 E-value=0.12 Score=58.45 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=26.9
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecch
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPI 452 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPt 452 (1379)
+.++++.+|+|+|||..+.........++.+++|+.-.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 35899999999999987553333344567777777553
No 215
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.12 E-value=0.26 Score=60.69 Aligned_cols=127 Identities=15% Similarity=0.130 Sum_probs=67.5
Q ss_pred HCCCcEEEEcCCCccHHHHHHH-HHHHH-HhcCCcEEEe-c-chHHHHHHHHHHHhccccEEEEecCcccCCCCceeeec
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEY-AFALA-TKHCTRAVYT-A-PIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMT 488 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~-aI~~~-l~~~~raIyl-s-PtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~T 488 (1379)
..++.+++++|||+|||..+.. |.... ...+.++.++ + |.+.-+.++.+.+.+..++.+ ..+.+
T Consensus 219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~------------~~~~~ 286 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV------------EVVYD 286 (424)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce------------EccCC
Confidence 3467889999999999976543 33333 2344555443 3 334333344444444322211 12345
Q ss_pred HHHHHHHHhcCcccCCCccEEEEeccCCCCCcc-chhHHHHHHHHc-CccceEEEecccCCChHHHHHHH
Q 039491 489 TEILRSMLYRGADIIRDIEWVIFDEVHYVNDIE-RGVVWEEVIIML-PRHINIVLLSATVPNTVEFADWI 556 (1379)
Q Consensus 489 pEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~-rG~v~eeii~~L-p~~vqiIlLSATvpN~~efa~wl 556 (1379)
++.+...+.+ +.+.++||||-+-+..... ....+..++... .+...++.+|||.. ..++.+.+
T Consensus 287 ~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~-~~~l~~~~ 351 (424)
T PRK05703 287 PKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK-YEDLKDIY 351 (424)
T ss_pred HHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC-HHHHHHHH
Confidence 5556555543 3468999999997754321 112233333311 23345788999964 33344433
No 216
>PRK09183 transposase/IS protein; Provisional
Probab=95.11 E-value=0.3 Score=56.25 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=33.0
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHH
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQ 458 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQ 458 (1379)
+.++.++++.+|+|+|||..+......+...+.++.|+.- ..|..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~-~~l~~~ 144 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTA-ADLLLQ 144 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeH-HHHHHH
Confidence 5678999999999999998765444444566777877653 345443
No 217
>PRK05642 DNA replication initiation factor; Validated
Probab=95.09 E-value=0.093 Score=59.40 Aligned_cols=94 Identities=15% Similarity=0.172 Sum_probs=54.4
Q ss_pred CcEEEEcCCCccHHHHHHHHHHH-HHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFAL-ATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRS 494 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~-~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL~s 494 (1379)
..+++.+++|+|||-.+. ++.. ....+.+++|+.. ..+... .+.+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~-a~~~~~~~~~~~v~y~~~-~~~~~~------------------------------~~~~~~ 93 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQ-AACLRFEQRGEPAVYLPL-AELLDR------------------------------GPELLD 93 (234)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHhCCCcEEEeeH-HHHHhh------------------------------hHHHHH
Confidence 468999999999997643 4433 3345778888764 333221 011222
Q ss_pred HHhcCcccCCCccEEEEeccCCCCCccc-hhHHHHHHHHcCccceEEEecccCCC
Q 039491 495 MLYRGADIIRDIEWVIFDEVHYVNDIER-GVVWEEVIIMLPRHINIVLLSATVPN 548 (1379)
Q Consensus 495 mL~~~~~~l~~v~lVI~DEaH~l~d~~r-G~v~eeii~~Lp~~vqiIlLSATvpN 548 (1379)
.+.+++++|+|++|.+..... ...+-.++..+...-+.+++++|.++
T Consensus 94 -------~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 94 -------NLEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred -------hhhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 234668999999998854321 11122334444443355777777544
No 218
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=94.97 E-value=0.053 Score=67.17 Aligned_cols=81 Identities=16% Similarity=0.121 Sum_probs=64.3
Q ss_pred HhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHH-hcCCcEEEecchHHHHHHHHHHHh
Q 039491 387 HELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALAT-KHCTRAVYTAPIKTISNQKYRDFS 464 (1379)
Q Consensus 387 ~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l-~~~~raIylsPtkaLsnQk~~~~~ 464 (1379)
...+|.-...+++. |+.-|..|+.+.++..-.++++|.|+|||++..-.+.+.. .+..++++.+|+..-+.|..+.+.
T Consensus 396 k~~LP~~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh 475 (935)
T KOG1802|consen 396 KKLLPRRFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIH 475 (935)
T ss_pred cccCchhhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHH
Confidence 33444433334555 9999999999999999999999999999987554444444 567899999999999999999998
Q ss_pred ccc
Q 039491 465 GKF 467 (1379)
Q Consensus 465 ~~f 467 (1379)
+..
T Consensus 476 ~tg 478 (935)
T KOG1802|consen 476 KTG 478 (935)
T ss_pred hcC
Confidence 876
No 219
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.94 E-value=0.24 Score=62.89 Aligned_cols=149 Identities=16% Similarity=0.145 Sum_probs=90.8
Q ss_pred CCCCCHHHHHHHHHH---HCCCcEEEEcCCCccHHHHHHHHHHHHHh-cCCcEEEecchHHHHHHHHHHHhccc-cEE--
Q 039491 398 PFELDNFQKEAIYYL---ENGDSVFVAAHTSAGKTVVAEYAFALATK-HCTRAVYTAPIKTISNQKYRDFSGKF-DVG-- 470 (1379)
Q Consensus 398 pFeL~~~Q~eAI~~L---~~g~sVlV~ApTGSGKTlvae~aI~~~l~-~~~raIylsPtkaLsnQk~~~~~~~f-~Vg-- 470 (1379)
|.-++|.=.+=|+.+ .+.+-.++.+|=|-|||.+..+++...+. .+.+++|++|.+.-+.+.++.++..+ ..+
T Consensus 167 p~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~ 246 (752)
T PHA03333 167 PEAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHK 246 (752)
T ss_pred cCCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhccc
Confidence 444667666666654 34456788899999999886655443333 68899999999999999888776655 222
Q ss_pred ----------EEecCcc---c-CC-C-----CceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHH
Q 039491 471 ----------LLTGDVS---L-RP-E-----ASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVI 530 (1379)
Q Consensus 471 ----------lltGdv~---i-n~-~-----a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii 530 (1379)
-+.|+.. + ++ . ..|...+.. .+...-.++++||+|||+.+.+ ..|+.++
T Consensus 247 ~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~----~~l~aIl 315 (752)
T PHA03333 247 PWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNP----GALLSVL 315 (752)
T ss_pred cccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCH----HHHHHHH
Confidence 1112111 0 10 0 122222211 1111112568999999999974 5677776
Q ss_pred HHcC-ccceEEEecccCCChHHHHHHHhh
Q 039491 531 IMLP-RHINIVLLSATVPNTVEFADWIGR 558 (1379)
Q Consensus 531 ~~Lp-~~vqiIlLSATvpN~~efa~wl~~ 558 (1379)
-++. ...+++++|-+.. ...+...+..
T Consensus 316 P~l~~~~~k~IiISS~~~-~~s~tS~L~n 343 (752)
T PHA03333 316 PLMAVKGTKQIHISSPVD-ADSWISRVGE 343 (752)
T ss_pred HHHccCCCceEEEeCCCC-cchHHHHhhh
Confidence 5554 5788888888842 3334444444
No 220
>PRK06893 DNA replication initiation factor; Validated
Probab=94.90 E-value=0.069 Score=60.21 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=26.5
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecc
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAP 451 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsP 451 (1379)
+..+++.+|+|+|||-.+......+..++.+++|+.-
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 3457999999999997655444444566777777664
No 221
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.78 E-value=0.17 Score=59.89 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=17.9
Q ss_pred cEEEEcCCCccHHHHHHHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALA 439 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~ 439 (1379)
++++.+|+|+|||..+.......
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999998765444333
No 222
>PRK12377 putative replication protein; Provisional
Probab=94.77 E-value=0.35 Score=55.27 Aligned_cols=75 Identities=11% Similarity=0.220 Sum_probs=46.0
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHH-HhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALA-TKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILR 493 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~-l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL~ 493 (1379)
..++++.+++|+|||..+. ||+.. ...+..++|+ +...|..+....+.. + .+...+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~-AIa~~l~~~g~~v~~i-~~~~l~~~l~~~~~~--------~------------~~~~~~l 158 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAA-AIGNRLLAKGRSVIVV-TVPDVMSRLHESYDN--------G------------QSGEKFL 158 (248)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHcCCCeEEE-EHHHHHHHHHHHHhc--------c------------chHHHHH
Confidence 4689999999999998764 44444 4556666555 445666554433321 0 0111222
Q ss_pred HHHhcCcccCCCccEEEEeccCCCC
Q 039491 494 SMLYRGADIIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 494 smL~~~~~~l~~v~lVI~DEaH~l~ 518 (1379)
+ .+.++++||+||++...
T Consensus 159 ~-------~l~~~dLLiIDDlg~~~ 176 (248)
T PRK12377 159 Q-------ELCKVDLLVLDEIGIQR 176 (248)
T ss_pred H-------HhcCCCEEEEcCCCCCC
Confidence 2 24688999999997654
No 223
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=94.70 E-value=0.1 Score=64.94 Aligned_cols=142 Identities=21% Similarity=0.313 Sum_probs=96.4
Q ss_pred CCCHHHHHHHHHH----HCCCcEEEEcCCCccHHHHHHHHHHHHHh-c--CCcEEEecchHHHHHHHHHHHhcc---ccE
Q 039491 400 ELDNFQKEAIYYL----ENGDSVFVAAHTSAGKTVVAEYAFALATK-H--CTRAVYTAPIKTISNQKYRDFSGK---FDV 469 (1379)
Q Consensus 400 eL~~~Q~eAI~~L----~~g~sVlV~ApTGSGKTlvae~aI~~~l~-~--~~raIylsPtkaLsnQk~~~~~~~---f~V 469 (1379)
+|-.||.+.+..| ++|=+.+++-..|-|||+-+.-.++.... + -+--++++|--.|-| |..++.+. |++
T Consensus 567 tLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~N-WaqEisrFlP~~k~ 645 (1185)
T KOG0388|consen 567 TLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHN-WAQEISRFLPSFKV 645 (1185)
T ss_pred hhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhH-HHHHHHHhCcccee
Confidence 5789999988775 67889999999999999876544444332 2 255789999888754 55555554 466
Q ss_pred EEEecCcc----------------cCCCCceeeecHHHHHH---HHhcCcccCCCccEEEEeccCCCCCccchhHHHHHH
Q 039491 470 GLLTGDVS----------------LRPEASCLIMTTEILRS---MLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVI 530 (1379)
Q Consensus 470 glltGdv~----------------in~~a~IlV~TpEiL~s---mL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii 530 (1379)
--+.|+.+ .+...+|+|+|+..+.. ++.+ -++.++|+|||.-+... -...|..++
T Consensus 646 lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qk-----vKWQYMILDEAQAIKSS-sS~RWKtLL 719 (1185)
T KOG0388|consen 646 LPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQK-----VKWQYMILDEAQAIKSS-SSSRWKTLL 719 (1185)
T ss_pred ecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHh-----hhhhheehhHHHHhhhh-hhhHHHHHh
Confidence 66677665 13346888888865521 2221 14568999999988753 366687766
Q ss_pred HHcCccceEEEeccc-CCChH
Q 039491 531 IMLPRHINIVLLSAT-VPNTV 550 (1379)
Q Consensus 531 ~~Lp~~vqiIlLSAT-vpN~~ 550 (1379)
..-. ...++||.| +.|..
T Consensus 720 sF~c--RNRLLLTGTPIQNsM 738 (1185)
T KOG0388|consen 720 SFKC--RNRLLLTGTPIQNSM 738 (1185)
T ss_pred hhhc--cceeeecCCccchHH
Confidence 5322 356889999 55664
No 224
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.63 E-value=0.21 Score=55.59 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=26.0
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEe
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 449 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyl 449 (1379)
.+.++++.+++|+|||..+..........+..++|+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i 72 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYL 72 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 456899999999999988765554444455556654
No 225
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.59 E-value=0.21 Score=69.47 Aligned_cols=125 Identities=14% Similarity=0.022 Sum_probs=78.5
Q ss_pred CCCCCCHHHHHHHHHHHCC--CcEEEEcCCCccHHHHHHHH--HHHHH--hcCCcEEEecchHHHHHHHHHHHhccccEE
Q 039491 397 FPFELDNFQKEAIYYLENG--DSVFVAAHTSAGKTVVAEYA--FALAT--KHCTRAVYTAPIKTISNQKYRDFSGKFDVG 470 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~L~~g--~sVlV~ApTGSGKTlvae~a--I~~~l--~~~~raIylsPtkaLsnQk~~~~~~~f~Vg 470 (1379)
..+.|++-|++|+..++.. +-++|.+..|+|||.+.... ++..+ ..+.+++.++||-.-+.... +. |
T Consensus 832 ~~~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~----e~---G 904 (1623)
T PRK14712 832 LMEKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMR----SA---G 904 (1623)
T ss_pred hhcccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHH----Hh---C
Confidence 3457999999999998754 67899999999999874322 22222 24677999999976665542 21 1
Q ss_pred EEecCcccCCCCceeeecHHHHHHHH----hcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCc-cceEEEeccc
Q 039491 471 LLTGDVSLRPEASCLIMTTEILRSML----YRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPR-HINIVLLSAT 545 (1379)
Q Consensus 471 lltGdv~in~~a~IlV~TpEiL~smL----~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~-~vqiIlLSAT 545 (1379)
|--.|...|.... ..+......-++||+||+=++. ...+..++..++. ..++|++-=+
T Consensus 905 -------------i~A~TIasfL~~~~~~~~~~~~~~~~~~llIVDEASMV~----~~~m~~ll~~~~~~garvVLVGD~ 967 (1623)
T PRK14712 905 -------------VDAQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVG----NTDMARAYALIAAGGGRAVASGDT 967 (1623)
T ss_pred -------------chHhhHHHHhccccchhhcccCCCCCCcEEEEEcccccc----HHHHHHHHHhhhhCCCEEEEEcch
Confidence 1112333322110 1111122346899999999997 3456666666664 5788887655
No 226
>PRK06921 hypothetical protein; Provisional
Probab=94.55 E-value=0.28 Score=56.73 Aligned_cols=43 Identities=16% Similarity=0.110 Sum_probs=29.8
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHH-hc-CCcEEEecchHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALAT-KH-CTRAVYTAPIKTISNQ 458 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l-~~-~~raIylsPtkaLsnQ 458 (1379)
.+.++++.++||+|||..+. ||+..+ .+ +..++|+.. ..|..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~-aia~~l~~~~g~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT-AAANELMRKKGVPVLYFPF-VEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH-HHHHHHhhhcCceEEEEEH-HHHHHH
Confidence 46789999999999998664 555544 44 677777764 344333
No 227
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.53 E-value=0.2 Score=57.41 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=57.8
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeec-HHH
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMT-TEI 491 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~T-pEi 491 (1379)
.++.++++.+++|.|||..+. ||...+.....-++.+++.+|..+....+.. .+ .+.
T Consensus 103 ~~~~nl~l~G~~G~GKThLa~-Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~---------------------~~~~~~ 160 (254)
T COG1484 103 ERGENLVLLGPPGVGKTHLAI-AIGNELLKAGISVLFITAPDLLSKLKAAFDE---------------------GRLEEK 160 (254)
T ss_pred ccCCcEEEECCCCCcHHHHHH-HHHHHHHHcCCeEEEEEHHHHHHHHHHHHhc---------------------CchHHH
Confidence 468899999999999998764 4444443434445556777887776655552 11 123
Q ss_pred HHHHHhcCcccCCCccEEEEeccCCCCCcc-chhHHHHHHHH
Q 039491 492 LRSMLYRGADIIRDIEWVIFDEVHYVNDIE-RGVVWEEVIIM 532 (1379)
Q Consensus 492 L~smL~~~~~~l~~v~lVI~DEaH~l~d~~-rG~v~eeii~~ 532 (1379)
|.. .+..++++|+||+=+..... ....|.++|..
T Consensus 161 l~~-------~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~ 195 (254)
T COG1484 161 LLR-------ELKKVDLLIIDDIGYEPFSQEEADLLFQLISR 195 (254)
T ss_pred HHH-------HhhcCCEEEEecccCccCCHHHHHHHHHHHHH
Confidence 332 25678999999999865332 23445555543
No 228
>PHA00729 NTP-binding motif containing protein
Probab=94.51 E-value=0.26 Score=55.36 Aligned_cols=115 Identities=14% Similarity=0.145 Sum_probs=61.4
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRSML 496 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL~smL 496 (1379)
++++.+++|+|||..|. +++..+. ..+. .+..++....+...+++.+.+.|...+
T Consensus 19 nIlItG~pGvGKT~LA~-aLa~~l~-------------------~~l~-----~l~~~~~~~d~~~~~~fid~~~Ll~~L 73 (226)
T PHA00729 19 SAVIFGKQGSGKTTYAL-KVARDVF-------------------WKLN-----NLSTKDDAWQYVQNSYFFELPDALEKI 73 (226)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHHH-------------------hhcc-----cccchhhHHhcCCcEEEEEHHHHHHHH
Confidence 89999999999998653 2222211 0000 011112223345578888888777777
Q ss_pred hcCcccCCCccEEEEec--cCCCCC-cc--chhHHHHHHHHcCccceEEEecccCCChHHHHHHHhh
Q 039491 497 YRGADIIRDIEWVIFDE--VHYVND-IE--RGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGR 558 (1379)
Q Consensus 497 ~~~~~~l~~v~lVI~DE--aH~l~d-~~--rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~ 558 (1379)
.........++++|+|| +|.+.. +. .-.+.-.+...+...++++.+... +..++...+..
T Consensus 74 ~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~l--s~edL~~~Lr~ 138 (226)
T PHA00729 74 QDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTP--SPEDLAFYLRE 138 (226)
T ss_pred HHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecC--CHHHHHHHHHh
Confidence 54222234568999999 333321 00 001222344445555666666555 55566666653
No 229
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.50 E-value=0.56 Score=56.71 Aligned_cols=126 Identities=12% Similarity=0.104 Sum_probs=69.0
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec--chHHHHHHHHHHHhccccEEEEecCcccCCCCcee-eecHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA--PIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCL-IMTTEI 491 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls--PtkaLsnQk~~~~~~~f~VglltGdv~in~~a~Il-V~TpEi 491 (1379)
.+.+++++|||+|||..+.........++.++.++. |.++-+.++.+.+.+..+ ..+. +.++..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lg-------------ipv~v~~d~~~ 307 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIG-------------FEVIAVRDEAA 307 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcC-------------CcEEecCCHHH
Confidence 457889999999999865433333445565554443 334333333344433221 2222 346777
Q ss_pred HHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHH---cCccceEEEecccCCChHHHHHHHh
Q 039491 492 LRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIM---LPRHINIVLLSATVPNTVEFADWIG 557 (1379)
Q Consensus 492 L~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~---Lp~~vqiIlLSATvpN~~efa~wl~ 557 (1379)
+...+..-.. -.+.++|++|-+=+.... ...++++... ..++..++.+|||... .+..+++.
T Consensus 308 L~~aL~~lk~-~~~~DvVLIDTaGRs~kd--~~lm~EL~~~lk~~~PdevlLVLsATtk~-~d~~~i~~ 372 (436)
T PRK11889 308 MTRALTYFKE-EARVDYILIDTAGKNYRA--SETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIIT 372 (436)
T ss_pred HHHHHHHHHh-ccCCCEEEEeCccccCcC--HHHHHHHHHHHhhcCCCeEEEEECCccCh-HHHHHHHH
Confidence 7666543211 125899999999775432 3334444433 3344456669998543 33344444
No 230
>PRK04195 replication factor C large subunit; Provisional
Probab=94.49 E-value=0.16 Score=63.73 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=32.8
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae 433 (1379)
..+++.++...+.....+..++..+.... ..+.+++.||+|+|||..+.
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~g~----------------~~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLKGK----------------PKKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhcCC----------------CCCeEEEECCCCCCHHHHHH
Confidence 34567777777777777766543322110 14679999999999998653
No 231
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.43 E-value=0.15 Score=61.45 Aligned_cols=118 Identities=19% Similarity=0.206 Sum_probs=64.7
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHH-hcC-CcEEEe-cch-HHHHHHHHHHHhccccEEEEecCcccCCCCceeee
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALAT-KHC-TRAVYT-API-KTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIM 487 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l-~~~-~raIyl-sPt-kaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~ 487 (1379)
+.+|..+++++|||+|||..+.-...... +.+ .++.++ .-+ +.=+.++.+.+.+.+.+.+ ..+.
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~------------~~~~ 201 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPV------------HAVK 201 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCce------------EecC
Confidence 34678999999999999987544443333 334 344333 222 2223444444444432111 1234
Q ss_pred cHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc----CccceEEEecccCCC
Q 039491 488 TTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML----PRHINIVLLSATVPN 548 (1379)
Q Consensus 488 TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L----p~~vqiIlLSATvpN 548 (1379)
+++.+...+. .+.+.++|+||.+-+..- ...+.+.+.++ .+.-.++.+|||...
T Consensus 202 ~~~~l~~~l~----~l~~~DlVLIDTaG~~~~---d~~l~e~La~L~~~~~~~~~lLVLsAts~~ 259 (374)
T PRK14722 202 DGGDLQLALA----ELRNKHMVLIDTIGMSQR---DRTVSDQIAMLHGADTPVQRLLLLNATSHG 259 (374)
T ss_pred CcccHHHHHH----HhcCCCEEEEcCCCCCcc---cHHHHHHHHHHhccCCCCeEEEEecCccCh
Confidence 4444444443 245679999999976532 22233344433 223458889999644
No 232
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.41 E-value=0.12 Score=54.00 Aligned_cols=85 Identities=25% Similarity=0.301 Sum_probs=57.3
Q ss_pred eEEecCCCChHHHHHHHHHhcCCC-eeEEEecccccccCCCCCc---eEEEccccccC-------------------Ccc
Q 039491 751 IAIHHAGLLPIVKEVIEMLFCRGV-VKVLFSTETFAMGVNAPAR---TVVFDNLRKFD-------------------GRE 807 (1379)
Q Consensus 751 IavhHggL~~~~Re~Ve~lF~~G~-ikVLVATetla~GINiPa~---tvVI~~~~kfD-------------------g~~ 807 (1379)
.-++.-+....+...+.+.|++.. -.|||||..+++|||+|.. .|||.+.. |- ...
T Consensus 24 ~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP-fp~~~d~~~~~~~~~~~~~~~~~~ 102 (141)
T smart00492 24 LLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP-FPYPDSPILKARLELLRDKGQIRP 102 (141)
T ss_pred CeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC-CCCCCCHHHHHHHHHHHHhCCCCc
Confidence 344555566656788888898654 3799999889999999974 56666544 21 111
Q ss_pred cc----cCCHHHHHHHhcccCCCCCCCcEEEEEE
Q 039491 808 FR----QLLPGEYTQMAGRAGRRGLDKIGTVVVL 837 (1379)
Q Consensus 808 ~r----pls~~eyiQmaGRAGRrG~d~~G~vIil 837 (1379)
+. +.......|.+||+-|...| .|.++++
T Consensus 103 ~~~~~~~~a~~~l~Qa~GR~iR~~~D-~g~i~l~ 135 (141)
T smart00492 103 FDFVSLPDAMRTLAQCVGRLIRGAND-YGVVVIA 135 (141)
T ss_pred hhHHHHHHHHHHHHHHhCccccCcCc-eEEEEEE
Confidence 21 11246678999999998876 5765554
No 233
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.40 E-value=0.21 Score=57.19 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHH----CCC-cEEEEcCCCccHHHHHHHH
Q 039491 401 LDNFQKEAIYYLE----NGD-SVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 401 L~~~Q~eAI~~L~----~g~-sVlV~ApTGSGKTlvae~a 435 (1379)
+++.+++++..+. .+. .+++.||+|+|||..+-..
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l 63 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNL 63 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHH
Confidence 4566677777653 333 6889999999999876543
No 234
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=94.38 E-value=0.15 Score=63.50 Aligned_cols=123 Identities=20% Similarity=0.115 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccce
Q 039491 672 IWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGI 751 (1379)
Q Consensus 672 ~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGI 751 (1379)
.+..|+..|+. .++.+++|..-.+..+-+-++|...+++--
T Consensus 1032 ~LDeLL~kLka-egHRvL~yfQMTkM~dl~EdYl~yr~Y~yl-------------------------------------- 1072 (1185)
T KOG0388|consen 1032 VLDELLPKLKA-EGHRVLMYFQMTKMIDLIEDYLVYRGYTYL-------------------------------------- 1072 (1185)
T ss_pred eHHHHHHHhhc-CCceEEehhHHHHHHHHHHHHHHhhccceE--------------------------------------
Confidence 34455555554 458899988877777777777755444321
Q ss_pred EEecCCCChHHHHHHHHHhcCCCee-EEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCC
Q 039491 752 AIHHAGLLPIVKEVIEMLFCRGVVK-VLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDK 830 (1379)
Q Consensus 752 avhHggL~~~~Re~Ve~lF~~G~ik-VLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~ 830 (1379)
-+.|......|..+...|+...+- .|++|...+.|||+.+.+.||- ||. .++|.-=.|...||.|-|...
T Consensus 1073 -RLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViF----YdS----DWNPT~D~QAMDRAHRLGQTr 1143 (1185)
T KOG0388|consen 1073 -RLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIF----YDS----DWNPTADQQAMDRAHRLGQTR 1143 (1185)
T ss_pred -EecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEE----ecC----CCCcchhhHHHHHHHhccCcc
Confidence 256888888999999999986554 5789999999999998887777 888 888888899999999999987
Q ss_pred cEEEEEEecCCC
Q 039491 831 IGTVVVLCRDEI 842 (1379)
Q Consensus 831 ~G~vIil~~~~~ 842 (1379)
.-+||-+.....
T Consensus 1144 dvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1144 DVTVYRLITRGT 1155 (1185)
T ss_pred ceeeeeeccccc
Confidence 788888887654
No 235
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.35 E-value=0.3 Score=68.85 Aligned_cols=125 Identities=14% Similarity=0.041 Sum_probs=78.3
Q ss_pred CCCCCCHHHHHHHHHHHCC--CcEEEEcCCCccHHHHHHHHH--HHHH--hcCCcEEEecchHHHHHHHHHHHhccccEE
Q 039491 397 FPFELDNFQKEAIYYLENG--DSVFVAAHTSAGKTVVAEYAF--ALAT--KHCTRAVYTAPIKTISNQKYRDFSGKFDVG 470 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~L~~g--~sVlV~ApTGSGKTlvae~aI--~~~l--~~~~raIylsPtkaLsnQk~~~~~~~f~Vg 470 (1379)
..+.|++-|++|+..++.+ +-++|.+..|+|||.+.-..+ +..+ ..+.+++.++||---+.+. ++. |
T Consensus 964 ~~~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L----~e~---G 1036 (1747)
T PRK13709 964 LMEGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEM----RSA---G 1036 (1747)
T ss_pred hcCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHH----Hhc---C
Confidence 4567999999999998764 578899999999998743322 2222 2356789999997666543 321 1
Q ss_pred EEecCcccCCCCceeeecHHHHHHHH----hcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCc-cceEEEeccc
Q 039491 471 LLTGDVSLRPEASCLIMTTEILRSML----YRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPR-HINIVLLSAT 545 (1379)
Q Consensus 471 lltGdv~in~~a~IlV~TpEiL~smL----~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~-~vqiIlLSAT 545 (1379)
+--.|...|.... ..+......-++||+||+=++.. ..+..++..++. ..++|++-=+
T Consensus 1037 -------------i~A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~~----~~m~~Ll~~~~~~garvVLVGD~ 1099 (1747)
T PRK13709 1037 -------------VDAQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGN----TDMARAYALIAAGGGRAVSSGDT 1099 (1747)
T ss_pred -------------cchhhHHHHhcccccccccccCCCCCCcEEEEEccccccH----HHHHHHHHhhhcCCCEEEEecch
Confidence 1123444433211 01111223458999999999873 345566666664 6788877544
No 236
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.35 E-value=0.29 Score=62.08 Aligned_cols=148 Identities=15% Similarity=0.242 Sum_probs=93.4
Q ss_pred CCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHH--hcCCcEEEecchHHHHHHHHHHHhccc-------cE
Q 039491 399 FELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALAT--KHCTRAVYTAPIKTISNQKYRDFSGKF-------DV 469 (1379)
Q Consensus 399 FeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l--~~~~raIylsPtkaLsnQk~~~~~~~f-------~V 469 (1379)
|.+..+=..++.+..+ +..++..|==.|||.+....|+.++ -.|.+++|++|.+.-++..|++++..+ .+
T Consensus 239 Fdi~~~s~~~~~~fkq-k~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v 317 (738)
T PHA03368 239 FNTPLFSDAAVRHFRQ-RATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRV 317 (738)
T ss_pred cCCccccHHHHHHhhc-cceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhhe
Confidence 4444455555555544 4667788999999986554444344 469999999999999999999988764 23
Q ss_pred EEEecCccc-----CCC-CceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc-CccceEEEe
Q 039491 470 GLLTGDVSL-----RPE-ASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML-PRHINIVLL 542 (1379)
Q Consensus 470 glltGdv~i-----n~~-a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L-p~~vqiIlL 542 (1379)
..+.|+ .+ +.. ..|..+|. + ..+..-=..++++|+|||+.+.+ ..|..++-++ ..+.++|++
T Consensus 318 ~~vkGe-~I~i~f~nG~kstI~FaSa---r---ntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~l~~~n~k~I~I 386 (738)
T PHA03368 318 DHVKGE-TISFSFPDGSRSTIVFASS---H---NTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGFLNQTNCKIIFV 386 (738)
T ss_pred eeecCc-EEEEEecCCCccEEEEEec---c---CCCCccCCcccEEEEechhhCCH----HHHHHHHHHHhccCccEEEE
Confidence 344453 33 111 24444432 1 01111123789999999999985 5667666444 357899999
Q ss_pred cccCCChHHHHHHHhhh
Q 039491 543 SATVPNTVEFADWIGRT 559 (1379)
Q Consensus 543 SATvpN~~efa~wl~~~ 559 (1379)
|-|-... .-..|+...
T Consensus 387 SS~Ns~~-~sTSFL~nL 402 (738)
T PHA03368 387 SSTNTGK-ASTSFLYNL 402 (738)
T ss_pred ecCCCCc-cchHHHHhh
Confidence 9984321 223455443
No 237
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.32 E-value=0.24 Score=61.60 Aligned_cols=75 Identities=16% Similarity=0.337 Sum_probs=47.1
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHH-hc--CCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALAT-KH--CTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEIL 492 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l-~~--~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL 492 (1379)
..+++.||+|+|||..+. +++..+ .+ +.+++|+.. ..+.++....++. .+.+.+
T Consensus 149 ~~l~l~G~~G~GKThL~~-ai~~~~~~~~~~~~v~yi~~-~~~~~~~~~~~~~---------------------~~~~~~ 205 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH-AIGNYILEKNPNAKVVYVTS-EKFTNDFVNALRN---------------------NTMEEF 205 (450)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHHc---------------------CcHHHH
Confidence 468999999999998754 344433 33 566777744 4555554444332 022334
Q ss_pred HHHHhcCcccCCCccEEEEeccCCCCCc
Q 039491 493 RSMLYRGADIIRDIEWVIFDEVHYVNDI 520 (1379)
Q Consensus 493 ~smL~~~~~~l~~v~lVI~DEaH~l~d~ 520 (1379)
... ++..++||+||+|.+...
T Consensus 206 ~~~-------~~~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 206 KEK-------YRSVDVLLIDDIQFLAGK 226 (450)
T ss_pred HHH-------HhcCCEEEEehhhhhcCC
Confidence 332 346789999999998653
No 238
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.30 E-value=0.22 Score=60.49 Aligned_cols=35 Identities=20% Similarity=0.185 Sum_probs=24.6
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhc--CCcEEEe
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKH--CTRAVYT 449 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~--~~raIyl 449 (1379)
..+++|.||+|+|||.+.-..+...... +..++|+
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYI 91 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3579999999999999866555444333 3556665
No 239
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.28 E-value=0.4 Score=53.82 Aligned_cols=100 Identities=18% Similarity=0.253 Sum_probs=58.3
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHH---hcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALAT---KHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILR 493 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l---~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL~ 493 (1379)
.+++.+++|+|||-. +.||...+ ..+.+++|+... +..+.....++. ...+.+.
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~~-~f~~~~~~~~~~---------------------~~~~~~~ 92 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSAE-EFIREFADALRD---------------------GEIEEFK 92 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEHH-HHHHHHHHHHHT---------------------TSHHHHH
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecHH-HHHHHHHHHHHc---------------------ccchhhh
Confidence 489999999999974 34554443 246778887653 444443333332 1223343
Q ss_pred HHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHH----Hc-CccceEEEecccCCCh
Q 039491 494 SMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVII----ML-PRHINIVLLSATVPNT 549 (1379)
Q Consensus 494 smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~----~L-p~~vqiIlLSATvpN~ 549 (1379)
+ .++..+++|||.+|.+.+. ..|++.+. .+ ..+.++|+.|...|..
T Consensus 93 ~-------~~~~~DlL~iDDi~~l~~~---~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 93 D-------RLRSADLLIIDDIQFLAGK---QRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp H-------HHCTSSEEEEETGGGGTTH---HHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred h-------hhhcCCEEEEecchhhcCc---hHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 3 2457899999999999753 23433332 22 2345777777666553
No 240
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.22 E-value=0.12 Score=59.65 Aligned_cols=44 Identities=11% Similarity=0.176 Sum_probs=29.2
Q ss_pred cCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccC
Q 039491 502 IIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATV 546 (1379)
Q Consensus 502 ~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATv 546 (1379)
....+..+||||||.|.... ...+..++...+.++++|+..--+
T Consensus 126 ~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCCh
Confidence 44567899999999987321 223344455567788888876554
No 241
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.21 E-value=0.1 Score=56.14 Aligned_cols=47 Identities=13% Similarity=0.107 Sum_probs=34.9
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHh
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFS 464 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~ 464 (1379)
+++|.|++|+|||..+.-.+...++.+.+++|++.. +-..+..+.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e-~~~~~~~~~~~ 47 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE-ESPEELIENAE 47 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC-CCHHHHHHHHH
Confidence 478999999999998877777777889999999753 33344444443
No 242
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.20 E-value=0.24 Score=54.61 Aligned_cols=123 Identities=15% Similarity=0.107 Sum_probs=68.5
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec--chHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA--PIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRS 494 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls--PtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL~s 494 (1379)
-+++++|||+|||....-..+....++.++.+++ ..|.=+.++.+.+.+..++-++.-....+ ..+.+..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~--------~~~~~~~ 74 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESD--------PAEIARE 74 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSC--------HHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchh--------hHHHHHH
Confidence 4688999999999754333333333354444433 24555666666666666555443211100 1233444
Q ss_pred HHhcCcccCCCccEEEEeccCCCCC-ccchhHHHHHHHHcCccceEEEecccCCCh
Q 039491 495 MLYRGADIIRDIEWVIFDEVHYVND-IERGVVWEEVIIMLPRHINIVLLSATVPNT 549 (1379)
Q Consensus 495 mL~~~~~~l~~v~lVI~DEaH~l~d-~~rG~v~eeii~~Lp~~vqiIlLSATvpN~ 549 (1379)
.+... .-++.++|++|=+.+... .+.-..+..++..+.+.--++.+|||....
T Consensus 75 ~l~~~--~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~ 128 (196)
T PF00448_consen 75 ALEKF--RKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE 128 (196)
T ss_dssp HHHHH--HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH
T ss_pred HHHHH--hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH
Confidence 44321 124688999999987643 222334555566666667788999997654
No 243
>PRK11054 helD DNA helicase IV; Provisional
Probab=94.20 E-value=0.18 Score=65.51 Aligned_cols=83 Identities=17% Similarity=0.083 Sum_probs=64.7
Q ss_pred CCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc----CCcEEEecchHHHHHHHHHHHhccccEEEEe
Q 039491 398 PFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH----CTRAVYTAPIKTISNQKYRDFSGKFDVGLLT 473 (1379)
Q Consensus 398 pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~----~~raIylsPtkaLsnQk~~~~~~~f~Vgllt 473 (1379)
++.|++-|++|+.. ...+++|.|..|||||.+...-++..+.. ..++++++.++..++...+++.+.+.
T Consensus 194 ~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg----- 266 (684)
T PRK11054 194 SSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG----- 266 (684)
T ss_pred CCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC-----
Confidence 46799999999964 33578999999999999876666555533 46899999999999998888877531
Q ss_pred cCcccCCCCceeeecHHHHHH
Q 039491 474 GDVSLRPEASCLIMTTEILRS 494 (1379)
Q Consensus 474 Gdv~in~~a~IlV~TpEiL~s 494 (1379)
...+-|.|-..|..
T Consensus 267 -------~~~v~v~TFHSlal 280 (684)
T PRK11054 267 -------TEDITARTFHALAL 280 (684)
T ss_pred -------CCCcEEEeHHHHHH
Confidence 14678999987754
No 244
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.15 E-value=0.14 Score=66.72 Aligned_cols=86 Identities=16% Similarity=0.173 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc----CCcEEEecchHHHHHHHHHHHhccccEEEEecC
Q 039491 400 ELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH----CTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGD 475 (1379)
Q Consensus 400 eL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~----~~raIylsPtkaLsnQk~~~~~~~f~VglltGd 475 (1379)
.|++-|++|+.+. ...++|.|..|||||.+...-|+..+.. ..++++++.|+..+++...++...+ |.
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l------~~ 73 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTL------GR 73 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHh------Cc
Confidence 3789999999763 4578999999999999988888887753 3589999999999999888887654 11
Q ss_pred cccCCCCceeeecHHHHHHHH
Q 039491 476 VSLRPEASCLIMTTEILRSML 496 (1379)
Q Consensus 476 v~in~~a~IlV~TpEiL~smL 496 (1379)
.....+.|+|...+...+
T Consensus 74 ---~~~~~v~i~TfHS~~~~i 91 (672)
T PRK10919 74 ---KEARGLMISTFHTLGLDI 91 (672)
T ss_pred ---ccccCcEEEcHHHHHHHH
Confidence 012357899998775433
No 245
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.12 E-value=0.21 Score=56.31 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=34.6
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHhc-CCcEEEec---chHHHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATKH-CTRAVYTA---PIKTISNQ 458 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~~-~~raIyls---PtkaLsnQ 458 (1379)
..|+-++|+|++|+|||..+...+.....+ +.+++|++ |...+...
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r 60 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQR 60 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHH
Confidence 457889999999999998776666666655 89999998 34444443
No 246
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.12 E-value=0.25 Score=64.18 Aligned_cols=93 Identities=15% Similarity=0.270 Sum_probs=46.3
Q ss_pred EEEEcCCCccHHHHHHHHHHHHHh----c---CCcEEEecchH-HHHHHHHHHHhccccEEEEecCcccCCCCceeeecH
Q 039491 418 VFVAAHTSAGKTVVAEYAFALATK----H---CTRAVYTAPIK-TISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTT 489 (1379)
Q Consensus 418 VlV~ApTGSGKTlvae~aI~~~l~----~---~~raIylsPtk-aLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~Tp 489 (1379)
++|.|+||+|||++.-+.+..... . ...++|+--.. .=..+.|..+.+.+ .|.. +... +.+-
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL-----~g~~---P~~G--lsS~ 853 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQL-----FNKK---PPNA--LNSF 853 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHH-----cCCC---CCcc--ccHH
Confidence 469999999999988776544321 1 13456662111 11122333333221 1111 1111 1222
Q ss_pred HHHHHHHhcCcccCCCccEEEEeccCCCCCc
Q 039491 490 EILRSMLYRGADIIRDIEWVIFDEVHYVNDI 520 (1379)
Q Consensus 490 EiL~smL~~~~~~l~~v~lVI~DEaH~l~d~ 520 (1379)
+.|..+.......-+.+.+||+||+|++...
T Consensus 854 evLerLF~~L~k~~r~v~IIILDEID~L~kK 884 (1164)
T PTZ00112 854 KILDRLFNQNKKDNRNVSILIIDEIDYLITK 884 (1164)
T ss_pred HHHHHHHhhhhcccccceEEEeehHhhhCcc
Confidence 3333322222122345779999999999864
No 247
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.03 E-value=0.3 Score=59.86 Aligned_cols=75 Identities=15% Similarity=0.347 Sum_probs=46.8
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHH-hc--CCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALAT-KH--CTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEIL 492 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l-~~--~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL 492 (1379)
..+++.|++|+|||..+. +|...+ .+ +.+++|+... .+.++....+.. + +.+.+
T Consensus 137 n~l~l~G~~G~GKThL~~-ai~~~l~~~~~~~~v~yi~~~-~~~~~~~~~~~~--------~-------------~~~~~ 193 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLH-AIGNEILENNPNAKVVYVSSE-KFTNDFVNALRN--------N-------------KMEEF 193 (405)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHhCCCCcEEEEEHH-HHHHHHHHHHHc--------C-------------CHHHH
Confidence 358999999999998763 444444 33 5778887543 444443333321 0 23334
Q ss_pred HHHHhcCcccCCCccEEEEeccCCCCCc
Q 039491 493 RSMLYRGADIIRDIEWVIFDEVHYVNDI 520 (1379)
Q Consensus 493 ~smL~~~~~~l~~v~lVI~DEaH~l~d~ 520 (1379)
...+ ++.++|||||+|.+...
T Consensus 194 ~~~~-------~~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 194 KEKY-------RSVDLLLIDDIQFLAGK 214 (405)
T ss_pred HHHH-------HhCCEEEEehhhhhcCC
Confidence 3322 34689999999998753
No 248
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.01 E-value=0.31 Score=70.16 Aligned_cols=123 Identities=20% Similarity=0.134 Sum_probs=77.1
Q ss_pred CCCCCHHHHHHHHHHHCC--CcEEEEcCCCccHHHHHH---HHHHHHHh-cCCcEEEecchHHHHHHHHHHHhccccEEE
Q 039491 398 PFELDNFQKEAIYYLENG--DSVFVAAHTSAGKTVVAE---YAFALATK-HCTRAVYTAPIKTISNQKYRDFSGKFDVGL 471 (1379)
Q Consensus 398 pFeL~~~Q~eAI~~L~~g--~sVlV~ApTGSGKTlvae---~aI~~~l~-~~~raIylsPtkaLsnQk~~~~~~~f~Vgl 471 (1379)
.+.|++.|++|+..+..+ +-++|.+..|+|||.+.. -++..+.. .+.+++.++||-.-+.+. ++. |
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L----~~~---g- 1088 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGEL----KSA---G- 1088 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHH----Hhc---C-
Confidence 567999999999998654 567889999999998752 23334443 577899999996655443 321 1
Q ss_pred EecCcccCCCCceeeecHHHHHHH--HhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc-CccceEEEecc
Q 039491 472 LTGDVSLRPEASCLIMTTEILRSM--LYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML-PRHINIVLLSA 544 (1379)
Q Consensus 472 ltGdv~in~~a~IlV~TpEiL~sm--L~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L-p~~vqiIlLSA 544 (1379)
+--.|...|..- .++....+....+||+||+=++. ...+..++... +...++|++-=
T Consensus 1089 ------------~~a~Ti~s~l~~~~~~~~~~~~~~~~v~ivDEasMv~----~~~~~~l~~~~~~~~ak~vlvGD 1148 (1960)
T TIGR02760 1089 ------------VQAQTLDSFLTDISLYRNSGGDFRNTLFILDESSMVS----NFQLTHATELVQKSGSRAVSLGD 1148 (1960)
T ss_pred ------------CchHhHHHHhcCcccccccCCCCcccEEEEEcccccc----HHHHHHHHHhccCCCCEEEEeCC
Confidence 111233333210 01222224567899999999987 34455565554 34577777643
No 249
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=93.90 E-value=0.25 Score=59.95 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=40.1
Q ss_pred cCCCC-CCHHHHHHHHH----HHCCCcEEEEcCCCccHHHHHHHHHHHHHh----cCCcEEEecchH
Q 039491 396 DFPFE-LDNFQKEAIYY----LENGDSVFVAAHTSAGKTVVAEYAFALATK----HCTRAVYTAPIK 453 (1379)
Q Consensus 396 ~~pFe-L~~~Q~eAI~~----L~~g~sVlV~ApTGSGKTlvae~aI~~~l~----~~~raIylsPtk 453 (1379)
-|||. .+|-|-+=... +..+.+.++-+|+|+|||+..+-.|..... ...+.||.+-|.
T Consensus 11 ~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTv 77 (755)
T KOG1131|consen 11 YFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTV 77 (755)
T ss_pred ecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcc
Confidence 47887 88888776544 455678999999999999864443333332 245788877663
No 250
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=93.89 E-value=0.26 Score=64.46 Aligned_cols=131 Identities=18% Similarity=0.134 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccce
Q 039491 672 IWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGI 751 (1379)
Q Consensus 672 ~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGI 751 (1379)
.+.-|++.|+.. +++++||+.-.+.-+-+-..|.-.|+..-
T Consensus 1264 tLAiLLqQLk~e-ghRvLIfTQMtkmLDVLeqFLnyHgylY~-------------------------------------- 1304 (1958)
T KOG0391|consen 1264 TLAILLQQLKSE-GHRVLIFTQMTKMLDVLEQFLNYHGYLYV-------------------------------------- 1304 (1958)
T ss_pred HHHHHHHHHHhc-CceEEehhHHHHHHHHHHHHHhhcceEEE--------------------------------------
Confidence 344455555544 57888888777776666666654433221
Q ss_pred EEecCCCChHHHHHHHHHhcCC--CeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCC
Q 039491 752 AIHHAGLLPIVKEVIEMLFCRG--VVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLD 829 (1379)
Q Consensus 752 avhHggL~~~~Re~Ve~lF~~G--~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d 829 (1379)
-+.|...-++|+...+.|... -...|++|-.-..|||+-..+.||- ||. .++|..=.|.--|+.|.|..
T Consensus 1305 -RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvF----YDs----DwNPtMDaQAQDrChRIGqt 1375 (1958)
T KOG0391|consen 1305 -RLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVF----YDS----DWNPTMDAQAQDRCHRIGQT 1375 (1958)
T ss_pred -EecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEE----ecC----CCCchhhhHHHHHHHhhcCc
Confidence 145777889999999999865 3457789999999999987766655 898 88888888888888888876
Q ss_pred CcEEEEEEecCCCCCHHHHHH
Q 039491 830 KIGTVVVLCRDEIPGESDLKH 850 (1379)
Q Consensus 830 ~~G~vIil~~~~~~~~~~l~~ 850 (1379)
..-+.|-++.+..-+...+++
T Consensus 1376 RDVHIYRLISe~TIEeniLkk 1396 (1958)
T KOG0391|consen 1376 RDVHIYRLISERTIEENILKK 1396 (1958)
T ss_pred cceEEEEeeccchHHHHHHhh
Confidence 667888888765535454443
No 251
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.84 E-value=0.3 Score=60.49 Aligned_cols=75 Identities=12% Similarity=0.302 Sum_probs=48.3
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHH-hcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALAT-KHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRS 494 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l-~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL~s 494 (1379)
..+++.||+|+|||..+. +|+..+ ..+.+++|+.. ..+.++....+.. | +.+.++.
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~~~~v~yi~~-~~f~~~~~~~l~~--------~-------------~~~~f~~ 198 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRESGGKILYVRS-ELFTEHLVSAIRS--------G-------------EMQRFRQ 198 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHcCCCEEEeeH-HHHHHHHHHHHhc--------c-------------hHHHHHH
Confidence 458999999999998654 444443 46788888875 3454443333321 0 1233333
Q ss_pred HHhcCcccCCCccEEEEeccCCCCCc
Q 039491 495 MLYRGADIIRDIEWVIFDEVHYVNDI 520 (1379)
Q Consensus 495 mL~~~~~~l~~v~lVI~DEaH~l~d~ 520 (1379)
. .++.+++|+||+|.+...
T Consensus 199 ~-------~~~~dvLiIDDiq~l~~k 217 (445)
T PRK12422 199 F-------YRNVDALFIEDIEVFSGK 217 (445)
T ss_pred H-------cccCCEEEEcchhhhcCC
Confidence 2 346789999999998753
No 252
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.66 E-value=0.23 Score=55.54 Aligned_cols=127 Identities=13% Similarity=0.096 Sum_probs=66.1
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhc-CCcEEEecchHHHHHHHHHHHhccc----------cEEEEecCcccCCCC
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKH-CTRAVYTAPIKTISNQKYRDFSGKF----------DVGLLTGDVSLRPEA 482 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~-~~raIylsPtkaLsnQk~~~~~~~f----------~VglltGdv~in~~a 482 (1379)
.|..++|.+++|+|||..+.-.+...+++ +.+++|++-. +-..+..+.+.... .+.++..........
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e-e~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~ 96 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE-EPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWS 96 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS-S-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-T
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec-CCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccccc
Confidence 46789999999999999877777777788 9999999832 22244444444332 233333222211100
Q ss_pred ceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccc----hhHHHHHHHHcCccceEEEeccc
Q 039491 483 SCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIER----GVVWEEVIIMLPRHINIVLLSAT 545 (1379)
Q Consensus 483 ~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~r----G~v~eeii~~Lp~~vqiIlLSAT 545 (1379)
-...+.+...+...-... +.+.||||-...+..... ...+..+...+...-.++++++.
T Consensus 97 ---~~~~~~l~~~i~~~i~~~-~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~ 159 (226)
T PF06745_consen 97 ---PNDLEELLSKIREAIEEL-KPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSE 159 (226)
T ss_dssp ---SCCHHHHHHHHHHHHHHH-TSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ---ccCHHHHHHHHHHHHHhc-CCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEc
Confidence 223333333332211111 228999999876621111 12234444455444445555555
No 253
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.63 E-value=0.66 Score=58.05 Aligned_cols=128 Identities=15% Similarity=0.189 Sum_probs=66.5
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHH-hc-CCcEEEec--chHHHHHHHHHHHhccccEEEEecCcccCCCCceeee
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALAT-KH-CTRAVYTA--PIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIM 487 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l-~~-~~raIyls--PtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~ 487 (1379)
+..|+.+.+++|||+|||..+...+.... .+ +.++.++. +.+.-+.++.+.+.+.+.+.+. .+.
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~------------~a~ 414 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH------------EAD 414 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE------------ecC
Confidence 34678899999999999987644433333 32 33444432 2344343333333332222111 123
Q ss_pred cHHHHHHHHhcCcccCCCccEEEEeccCCCCCccc-hhHHHHHHHHcCccceEEEecccCCChHHHHHHHh
Q 039491 488 TTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIER-GVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIG 557 (1379)
Q Consensus 488 TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~r-G~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~ 557 (1379)
+++.+...+.+ +.+.++||||.+-+...... ...+..+ ........++.++++.. ..++.+.+.
T Consensus 415 d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L-~aa~~~a~lLVLpAtss-~~Dl~eii~ 479 (559)
T PRK12727 415 SAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWL-RAARQVTSLLVLPANAH-FSDLDEVVR 479 (559)
T ss_pred cHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHH-HHhhcCCcEEEEECCCC-hhHHHHHHH
Confidence 45556666543 45689999999987632211 1111112 22223456788888853 333334443
No 254
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.61 E-value=0.76 Score=55.48 Aligned_cols=141 Identities=18% Similarity=0.211 Sum_probs=77.8
Q ss_pred CCCcEEEEcCCCccHHHH-HHHHHHHH-H-hcCCcEEEecchHHH-HHHHHHHHhccccEEEEecCcccCCCCceeeecH
Q 039491 414 NGDSVFVAAHTSAGKTVV-AEYAFALA-T-KHCTRAVYTAPIKTI-SNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTT 489 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlv-ae~aI~~~-l-~~~~raIylsPtkaL-snQk~~~~~~~f~VglltGdv~in~~a~IlV~Tp 489 (1379)
+++.+.+++|||.|||.. |=+|.... + ++..-+|++.-|-=. |..+.+.+.+..++ .=++|-+|
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~v------------p~~vv~~~ 269 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGV------------PLEVVYSP 269 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCC------------ceEEecCH
Confidence 377899999999999975 22222222 1 223334555444222 22333333332211 12456678
Q ss_pred HHHHHHHhcCcccCCCccEEEEeccCCCC-CccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEc
Q 039491 490 EILRSMLYRGADIIRDIEWVIFDEVHYVN-DIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTG 568 (1379)
Q Consensus 490 EiL~smL~~~~~~l~~v~lVI~DEaH~l~-d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~ 568 (1379)
.-|...+. .+++.++|.+|=+-+-. |...-..+++.+....+--..+.||||. +..++-+.+
T Consensus 270 ~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~-K~~dlkei~------------ 332 (407)
T COG1419 270 KELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT-KYEDLKEII------------ 332 (407)
T ss_pred HHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc-chHHHHHHH------------
Confidence 77766553 46778999999887543 2222222333333333444568899995 333433333
Q ss_pred cCCCCcCceEEEeec
Q 039491 569 TTKRPVPLEHCLYYS 583 (1379)
Q Consensus 569 t~~RpvpLe~~l~~~ 583 (1379)
..++.+|+..+++..
T Consensus 333 ~~f~~~~i~~~I~TK 347 (407)
T COG1419 333 KQFSLFPIDGLIFTK 347 (407)
T ss_pred HHhccCCcceeEEEc
Confidence 346788888888753
No 255
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.42 E-value=0.37 Score=59.76 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=19.2
Q ss_pred CCccEEEEeccCCCCCccchhHHHHHHHHc
Q 039491 504 RDIEWVIFDEVHYVNDIERGVVWEEVIIML 533 (1379)
Q Consensus 504 ~~v~lVI~DEaH~l~d~~rG~v~eeii~~L 533 (1379)
....++||||||++.. ..++.++..+
T Consensus 120 g~~KV~IIDEah~Ls~----~A~NALLKtL 145 (484)
T PRK14956 120 GKYKVYIIDEVHMLTD----QSFNALLKTL 145 (484)
T ss_pred CCCEEEEEechhhcCH----HHHHHHHHHh
Confidence 4678999999999973 3456666555
No 256
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.40 E-value=0.25 Score=63.72 Aligned_cols=131 Identities=18% Similarity=0.182 Sum_probs=80.7
Q ss_pred CCHHHHHHHHHH---HC-C-CcEEEEcCCCccHHHHHHHHHHHHHhcCC--cEEEecchHHHHHHHHHHHhccc-cEEEE
Q 039491 401 LDNFQKEAIYYL---EN-G-DSVFVAAHTSAGKTVVAEYAFALATKHCT--RAVYTAPIKTISNQKYRDFSGKF-DVGLL 472 (1379)
Q Consensus 401 L~~~Q~eAI~~L---~~-g-~sVlV~ApTGSGKTlvae~aI~~~l~~~~--raIylsPtkaLsnQk~~~~~~~f-~Vgll 472 (1379)
.+.-|.+++..+ .. + +.+++.|.=|=|||.++-++++.+...+. ++++|+|+++=+...+.-..+.+ ..|.-
T Consensus 212 ~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~ 291 (758)
T COG1444 212 LTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYK 291 (758)
T ss_pred cChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCc
Confidence 345566655543 32 2 36889999999999998877755555554 99999999998887776666555 23321
Q ss_pred -----ecCcccCC----CCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEec
Q 039491 473 -----TGDVSLRP----EASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLS 543 (1379)
Q Consensus 473 -----tGdv~in~----~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLS 543 (1379)
++...+.. ...|=+.+|.... ..-++||+|||=-|. -+.++.++. ..+.++||
T Consensus 292 ~~v~~d~~g~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp----lplL~~l~~----~~~rv~~s 353 (758)
T COG1444 292 RKVAPDALGEIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP----LPLLHKLLR----RFPRVLFS 353 (758)
T ss_pred cccccccccceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC----hHHHHHHHh----hcCceEEE
Confidence 11111111 1223344443321 126899999998764 233333333 34579999
Q ss_pred ccCCCh
Q 039491 544 ATVPNT 549 (1379)
Q Consensus 544 ATvpN~ 549 (1379)
.|+...
T Consensus 354 TTIhGY 359 (758)
T COG1444 354 TTIHGY 359 (758)
T ss_pred eeeccc
Confidence 998644
No 257
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.27 E-value=0.76 Score=59.53 Aligned_cols=36 Identities=22% Similarity=0.523 Sum_probs=24.8
Q ss_pred CCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEec
Q 039491 504 RDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLLS 543 (1379)
Q Consensus 504 ~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlLS 543 (1379)
.+.+++||||+|+|.. ..+..++..| +.++.+|+.|
T Consensus 118 gr~KVIIIDEah~LT~----~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTN----HAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCH----HHHHHHHHHHHhcCCCeEEEEEE
Confidence 4678999999999974 2355555544 4566666655
No 258
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.21 E-value=0.64 Score=55.41 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=31.1
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQK 459 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk 459 (1379)
.+.++++.|+||+|||..+.-....++..+..|+|++- ..|..+.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~-~~l~~~l 226 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA-DELIEIL 226 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH-HHHHHHH
Confidence 45799999999999998765444444566777777653 4554443
No 259
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.12 E-value=0.11 Score=64.25 Aligned_cols=56 Identities=23% Similarity=0.353 Sum_probs=42.5
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlva 432 (1379)
+..+|++++..+++-..|. |+..+|.+ ++-|++-.+.+ -.-|++++|.|+|||+.|
T Consensus 506 PdVtW~dIGaL~~vR~eL~-----~aI~~PiK~pd~~k~lGi~~---PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELN-----MAILAPIKRPDLFKALGIDA---PSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred CCCChhhcccHHHHHHHHH-----HHHhhhccCHHHHHHhCCCC---CCceEEeCCCCccHHHHH
Confidence 5678999998888777665 45567776 77777665544 345999999999999864
No 260
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.06 E-value=0.78 Score=53.24 Aligned_cols=123 Identities=11% Similarity=0.185 Sum_probs=67.7
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec--chHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA--PIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEIL 492 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls--PtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL 492 (1379)
.+.+++++|+|+|||.++.-........+.+++++. +.+.-+.+....+.+...+.++......++. ...
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~--------~~~ 143 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPA--------AVA 143 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHH--------HHH
Confidence 456778899999999865444344445666666554 3455555555666655555555433221110 111
Q ss_pred HHHHhcCcccCCCccEEEEeccCCCCCc-cchhHHHHHHHHcC------ccceEEEecccCC
Q 039491 493 RSMLYRGADIIRDIEWVIFDEVHYVNDI-ERGVVWEEVIIMLP------RHINIVLLSATVP 547 (1379)
Q Consensus 493 ~smL~~~~~~l~~v~lVI~DEaH~l~d~-~rG~v~eeii~~Lp------~~vqiIlLSATvp 547 (1379)
...+.. ...++.++||+|=+-+.... ..-..+..+....+ ++-.++.++||..
T Consensus 144 ~~~l~~--~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~ 203 (272)
T TIGR00064 144 FDAIQK--AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG 203 (272)
T ss_pred HHHHHH--HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC
Confidence 121211 11356899999999876531 11112233333333 5667889999964
No 261
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=93.06 E-value=0.11 Score=60.77 Aligned_cols=105 Identities=27% Similarity=0.233 Sum_probs=71.5
Q ss_pred CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcC--CcEEEecchHHHHHHHHHHHhccc-cEEEEecCcc
Q 039491 401 LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHC--TRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVS 477 (1379)
Q Consensus 401 L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~--~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~ 477 (1379)
.++-|..=+.++.++.-+|..+|-|+|||+.+.-....++.++ .|+|.+=|-.+ .. +.|.+-||.+
T Consensus 129 kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~rIiLtRPaVE-----------AGEklGfLPGdl~ 197 (348)
T COG1702 129 KTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVRRIILTRPAVE-----------AGEKLGFLPGDLR 197 (348)
T ss_pred cChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccceeeecCcchh-----------cCcccCcCCCchh
Confidence 5799999999999999999999999999998776667777554 68898888222 23 6777888776
Q ss_pred cC--C----C--CceeeecHHHHHHHHhcCcccCC----------CccEEEEeccCC
Q 039491 478 LR--P----E--ASCLIMTTEILRSMLYRGADIIR----------DIEWVIFDEVHY 516 (1379)
Q Consensus 478 in--~----~--a~IlV~TpEiL~smL~~~~~~l~----------~v~lVI~DEaH~ 516 (1379)
.. | - +-.=++-++....++.++..-+. +=.+||+||+|.
T Consensus 198 eKvdPylRPLyDAl~d~l~~~~~~~~~e~~vIEiAPlAyMRGRTL~dAfVIlDEaQN 254 (348)
T COG1702 198 EKVDPYLRPLYDALYDILGAERVEALDERGVIEIAPLAYMRGRTLNDAFVILDEAQN 254 (348)
T ss_pred hhcccccccHHHHHHHHhhHHHHhhhhhcCcEEecchhhhhcCCCCCeEEEEecccc
Confidence 21 1 1 11124444555444444322111 125899999997
No 262
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=92.87 E-value=0.22 Score=52.03 Aligned_cols=76 Identities=24% Similarity=0.290 Sum_probs=50.5
Q ss_pred hHHHHHHHHHhcCCCe---eEEEeccc--ccccCCCCC---ceEEEccccccCCc-------------------cc----
Q 039491 760 PIVKEVIEMLFCRGVV---KVLFSTET--FAMGVNAPA---RTVVFDNLRKFDGR-------------------EF---- 808 (1379)
Q Consensus 760 ~~~Re~Ve~lF~~G~i---kVLVATet--la~GINiPa---~tvVI~~~~kfDg~-------------------~~---- 808 (1379)
+.....+++.|++..- .||||+.- +++|||+|+ +.|||.++. |-.. .+
T Consensus 30 ~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glP-fp~~~d~~~~~~~~~~~~~~~~~~~~~~~ 108 (142)
T smart00491 30 SGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIP-FPNPDSPILRARLEYLDEKGGIRPFDEVY 108 (142)
T ss_pred CchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecC-CCCCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 3344677888887543 69999987 999999997 467776654 2210 00
Q ss_pred ccCCHHHHHHHhcccCCCCCCCcEEEEEE
Q 039491 809 RQLLPGEYTQMAGRAGRRGLDKIGTVVVL 837 (1379)
Q Consensus 809 rpls~~eyiQmaGRAGRrG~d~~G~vIil 837 (1379)
.+.......|.+||+=|...| .|.++++
T Consensus 109 ~~~a~~~~~Qa~GR~iR~~~D-~g~i~l~ 136 (142)
T smart00491 109 LFDAMRALAQAIGRAIRHKND-YGVVVLL 136 (142)
T ss_pred HHHHHHHHHHHhCccccCccc-eEEEEEE
Confidence 011235667999999999876 6755554
No 263
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=92.85 E-value=0.31 Score=64.14 Aligned_cols=84 Identities=18% Similarity=0.093 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc----CCcEEEecchHHHHHHHHHHHhccccEEEEecCc
Q 039491 401 LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH----CTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDV 476 (1379)
Q Consensus 401 L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~----~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv 476 (1379)
|++-|++|+.+- ...++|.|..|||||.+...-|+..+.. ..++++++.|+..+++..+++.+... .
T Consensus 5 Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~------~- 75 (715)
T TIGR01075 5 LNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG------T- 75 (715)
T ss_pred cCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc------c-
Confidence 899999999763 4579999999999999988888877753 36899999999999998888887541 1
Q ss_pred ccCCCCceeeecHHHHHHHH
Q 039491 477 SLRPEASCLIMTTEILRSML 496 (1379)
Q Consensus 477 ~in~~a~IlV~TpEiL~smL 496 (1379)
....+.|+|-..+...+
T Consensus 76 ---~~~~~~i~TfHs~~~~i 92 (715)
T TIGR01075 76 ---SARGMWIGTFHGLAHRL 92 (715)
T ss_pred ---cccCcEEEcHHHHHHHH
Confidence 11357799998775443
No 264
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=92.85 E-value=0.34 Score=58.50 Aligned_cols=95 Identities=21% Similarity=0.225 Sum_probs=49.0
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHHhcCCc--EEEe-cchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALATKHCTR--AVYT-APIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEIL 492 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l~~~~r--aIyl-sPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL 492 (1379)
.|+++.++||+|||++.-+.+-+....... ++|+ |..-.=.-|.+..+...+ + +-..+-..+.+.+
T Consensus 43 ~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~--~---------~~p~~g~~~~~~~ 111 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKL--G---------KVPLTGDSSLEIL 111 (366)
T ss_pred ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHc--C---------CCCCCCCchHHHH
Confidence 479999999999999887776665533211 3443 111000122233333222 1 1111112233333
Q ss_pred HHHHhcCcccCCCccEEEEeccCCCCCccc
Q 039491 493 RSMLYRGADIIRDIEWVIFDEVHYVNDIER 522 (1379)
Q Consensus 493 ~smL~~~~~~l~~v~lVI~DEaH~l~d~~r 522 (1379)
..+++.-......=+||+||++.+.+...
T Consensus 112 -~~l~~~~~~~~~~~IvvLDEid~L~~~~~ 140 (366)
T COG1474 112 -KRLYDNLSKKGKTVIVILDEVDALVDKDG 140 (366)
T ss_pred -HHHHHHHHhcCCeEEEEEcchhhhccccc
Confidence 22322222244566899999999997653
No 265
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.83 E-value=0.65 Score=58.57 Aligned_cols=36 Identities=19% Similarity=0.445 Sum_probs=24.8
Q ss_pred CCccEEEEeccCCCCCccchhHHHHHHHH---cCccceEEEec
Q 039491 504 RDIEWVIFDEVHYVNDIERGVVWEEVIIM---LPRHINIVLLS 543 (1379)
Q Consensus 504 ~~v~lVI~DEaH~l~d~~rG~v~eeii~~---Lp~~vqiIlLS 543 (1379)
.+.+++||||||+|... ..+.++.. -|+++.+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~----a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGH----SFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHH----HHHHHHHHHhccCCCeEEEEEE
Confidence 46789999999999843 33444433 45677777755
No 266
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.82 E-value=0.77 Score=59.14 Aligned_cols=36 Identities=22% Similarity=0.458 Sum_probs=24.5
Q ss_pred CCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEe
Q 039491 503 IRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLL 542 (1379)
Q Consensus 503 l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlL 542 (1379)
....+++||||||+|+. ...+.++..+ |.++.+|+.
T Consensus 117 ~g~~KV~IIDEah~Ls~----~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSR----HSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred cCCCEEEEEechHhCCH----HHHHHHHHHHHcCCCCeEEEEe
Confidence 35788999999999984 3345555444 456666665
No 267
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.78 E-value=1.1 Score=53.13 Aligned_cols=125 Identities=12% Similarity=0.140 Sum_probs=66.6
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEe-cch-HHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT-API-KTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEI 491 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyl-sPt-kaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEi 491 (1379)
.+..+.+++|+|+|||..+.-........+.+++++ +.+ ++-+.++...+....++.++......++. .+ + .+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa-~~-v--~~~ 188 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPA-SV-A--FDA 188 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHH-HH-H--HHH
Confidence 356788999999999976543333333455666655 333 55454445555544455555443222221 00 0 011
Q ss_pred HHHHHhcCcccCCCccEEEEeccCCCCCcc-chhHHHHHHHH------cCccceEEEecccCCC
Q 039491 492 LRSMLYRGADIIRDIEWVIFDEVHYVNDIE-RGVVWEEVIIM------LPRHINIVLLSATVPN 548 (1379)
Q Consensus 492 L~smL~~~~~~l~~v~lVI~DEaH~l~d~~-rG~v~eeii~~------Lp~~vqiIlLSATvpN 548 (1379)
+... ..+++++||+|=+-++.... .-..+..+... ..++-.++.++||...
T Consensus 189 l~~~------~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~ 246 (318)
T PRK10416 189 IQAA------KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ 246 (318)
T ss_pred HHHH------HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh
Confidence 2111 23568999999998765321 11122222221 1345568999999643
No 268
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.72 E-value=0.56 Score=56.37 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=55.9
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHhcC-----CcEEEec-chHHHHHHHHHHHhccc--cEEEEecCcccC---CCCcee
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATKHC-----TRAVYTA-PIKTISNQKYRDFSGKF--DVGLLTGDVSLR---PEASCL 485 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~~~-----~raIyls-PtkaLsnQk~~~~~~~f--~VglltGdv~in---~~a~Il 485 (1379)
.+++.+|+|.|||..+...+...+... ...+... .... .++.+.... ++-.+....... ....|-
T Consensus 47 a~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~----~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~ 122 (351)
T PRK09112 47 ALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASP----VWRQIAQGAHPNLLHITRPFDEKTGKFKTAIT 122 (351)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCH----HHHHHHcCCCCCEEEeecccccccccccccCC
Confidence 589999999999987754433333311 1111100 0111 123333222 443332211110 112233
Q ss_pred eecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEec
Q 039491 486 IMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLLS 543 (1379)
Q Consensus 486 V~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlLS 543 (1379)
|-....+...+... .......+|||||||.|+.. ..+.++..+ |.++.+|++|
T Consensus 123 vd~iR~l~~~l~~~-~~~g~~rVviIDeAd~l~~~----aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 123 VDEIRRVGHFLSQT-SGDGNWRIVIIDPADDMNRN----AANAILKTLEEPPARALFILIS 178 (351)
T ss_pred HHHHHHHHHHhhhc-cccCCceEEEEEchhhcCHH----HHHHHHHHHhcCCCCceEEEEE
Confidence 32222233333332 23456789999999999742 234444443 4456666665
No 269
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=92.70 E-value=0.51 Score=61.38 Aligned_cols=66 Identities=15% Similarity=0.187 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHCC-CcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhcc
Q 039491 401 LDNFQKEAIYYLENG-DSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGK 466 (1379)
Q Consensus 401 L~~~Q~eAI~~L~~g-~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~ 466 (1379)
|+.-|++|+...+.- +..+|.+=+|+|||..-...|...+..|++|+.++=|..-+..+.-.++..
T Consensus 670 LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~ 736 (1100)
T KOG1805|consen 670 LNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGF 736 (1100)
T ss_pred cCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhcc
Confidence 889999999887554 457899999999998877777777778999999999998888877777764
No 270
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.64 E-value=1.8 Score=53.06 Aligned_cols=117 Identities=14% Similarity=0.172 Sum_probs=64.0
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHH-HhcCCcEEEe-c-chHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALA-TKHCTRAVYT-A-PIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEI 491 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~-l~~~~raIyl-s-PtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEi 491 (1379)
+..+++++|||+|||..+...+... ...+.++.++ . +.++.+..+.+.+.+...+.+.. +.....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~------------~~~~~~ 290 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYP------------VKDIKK 290 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeee------------hHHHHH
Confidence 4568899999999998765554433 4556555433 3 33555555555554433221111 111233
Q ss_pred HHHHHhcCcccCCCccEEEEeccCCCC-CccchhHHHHHHHHc---CccceEEEecccCCC
Q 039491 492 LRSMLYRGADIIRDIEWVIFDEVHYVN-DIERGVVWEEVIIML---PRHINIVLLSATVPN 548 (1379)
Q Consensus 492 L~smL~~~~~~l~~v~lVI~DEaH~l~-d~~rG~v~eeii~~L---p~~vqiIlLSATvpN 548 (1379)
+...+. -++.++||+|=+-+.. +...-..+..++... .+.-.++.||||...
T Consensus 291 l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~ 346 (432)
T PRK12724 291 FKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY 346 (432)
T ss_pred HHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH
Confidence 333332 1467899999887763 222122233333332 133567889999765
No 271
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.64 E-value=1.2 Score=52.63 Aligned_cols=102 Identities=8% Similarity=0.075 Sum_probs=55.0
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILR 493 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL~ 493 (1379)
.++++++.|++|+|||..+......+...+..+.|+.- -.|.++....+.. .+.+.+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~-~~l~~~lk~~~~~---------------------~~~~~~l 212 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHF-PEFIRELKNSISD---------------------GSVKEKI 212 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEH-HHHHHHHHHHHhc---------------------CcHHHHH
Confidence 35689999999999998765333344456666665532 2444443322211 0112222
Q ss_pred HHHhcCcccCCCccEEEEeccCCCC--CccchhHHHHHHHH-cCccceEEEecc
Q 039491 494 SMLYRGADIIRDIEWVIFDEVHYVN--DIERGVVWEEVIIM-LPRHINIVLLSA 544 (1379)
Q Consensus 494 smL~~~~~~l~~v~lVI~DEaH~l~--d~~rG~v~eeii~~-Lp~~vqiIlLSA 544 (1379)
. .+.+++++||||+..-. ++.+..++..++.. ......+|+-|-
T Consensus 213 ~-------~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 213 D-------AVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred H-------HhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 2 25688999999998643 33333344444422 223344444443
No 272
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.61 E-value=0.69 Score=59.09 Aligned_cols=37 Identities=22% Similarity=0.510 Sum_probs=26.2
Q ss_pred CCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEec
Q 039491 503 IRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLLS 543 (1379)
Q Consensus 503 l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlLS 543 (1379)
..+.+++||||||+|+. ..++.++..| |.++.+|+.|
T Consensus 122 ~gr~KViIIDEah~Ls~----~AaNALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTN----HAFNAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred cCCceEEEEEChHhcCH----HHHHHHHHhhccCCCCceEEEEe
Confidence 45688999999999984 3455566655 4567666665
No 273
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=92.52 E-value=0.34 Score=63.85 Aligned_cols=85 Identities=16% Similarity=0.077 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc----CCcEEEecchHHHHHHHHHHHhccccEEEEecC
Q 039491 400 ELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH----CTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGD 475 (1379)
Q Consensus 400 eL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~----~~raIylsPtkaLsnQk~~~~~~~f~VglltGd 475 (1379)
.|++-|++|+.+. ...++|.|..|||||.+...-|+..+.. ..++++++-|+..+++..+++.+... .
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~------~ 80 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG------T 80 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc------c
Confidence 3899999999754 3579999999999999988888877742 36899999999999998888887541 1
Q ss_pred cccCCCCceeeecHHHHHHHH
Q 039491 476 VSLRPEASCLIMTTEILRSML 496 (1379)
Q Consensus 476 v~in~~a~IlV~TpEiL~smL 496 (1379)
....+.|+|-..+...+
T Consensus 81 ----~~~~~~i~TfHs~~~~i 97 (721)
T PRK11773 81 ----SQGGMWVGTFHGLAHRL 97 (721)
T ss_pred ----CCCCCEEEcHHHHHHHH
Confidence 11357899998775443
No 274
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=92.52 E-value=0.3 Score=61.15 Aligned_cols=65 Identities=14% Similarity=0.184 Sum_probs=48.8
Q ss_pred HHHHHHHHHHH-----CC----CcEEEEcCCCccHHHHHHH-HHHHHH---hcCCcEEEecchHHHHHHHHHHHhccc
Q 039491 403 NFQKEAIYYLE-----NG----DSVFVAAHTSAGKTVVAEY-AFALAT---KHCTRAVYTAPIKTISNQKYRDFSGKF 467 (1379)
Q Consensus 403 ~~Q~eAI~~L~-----~g----~sVlV~ApTGSGKTlvae~-aI~~~l---~~~~raIylsPtkaLsnQk~~~~~~~f 467 (1379)
|||+-.+..+. .| +.+++.-|=+.|||..+.. ++...+ ..+..++++++++.-|...|..++...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i 78 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMI 78 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 67888887765 22 3578889999999975433 333333 346789999999999999999888876
No 275
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=92.47 E-value=0.49 Score=58.82 Aligned_cols=147 Identities=16% Similarity=0.144 Sum_probs=87.3
Q ss_pred ccCCCCCCHHHHHHHHHHHC------C----CcEEEEcCCCccHHHHHH-HHHHHHH---hcCCcEEEecchHHHHHHHH
Q 039491 395 LDFPFELDNFQKEAIYYLEN------G----DSVFVAAHTSAGKTVVAE-YAFALAT---KHCTRAVYTAPIKTISNQKY 460 (1379)
Q Consensus 395 ~~~pFeL~~~Q~eAI~~L~~------g----~sVlV~ApTGSGKTlvae-~aI~~~l---~~~~raIylsPtkaLsnQk~ 460 (1379)
..+||++-|||+-++.+|.. | +..|+..|-+-|||..+. +.....+ +++..+.+++|+.+-+.+.|
T Consensus 56 ~~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 56 PGFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred CCCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhh
Confidence 35899999999999999851 2 357999999999997543 3332222 67889999999999999888
Q ss_pred HHHhccc-cEEEEecCcccCCCCceeeecHHHHHH---HHhcCccc--CCCccEEEEeccCCCCCccchhHHHHHHHHc-
Q 039491 461 RDFSGKF-DVGLLTGDVSLRPEASCLIMTTEILRS---MLYRGADI--IRDIEWVIFDEVHYVNDIERGVVWEEVIIML- 533 (1379)
Q Consensus 461 ~~~~~~f-~VglltGdv~in~~a~IlV~TpEiL~s---mL~~~~~~--l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L- 533 (1379)
...+... ...-++--..+ +.+-..++.....+ .+...+.. =.+-.++||||.|...+.+ ..+..+..-+
T Consensus 136 ~~ar~mv~~~~~l~~~~~~--q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~~~~~~g~~ 211 (546)
T COG4626 136 NPARDMVKRDDDLRDLCNV--QTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMYSEAKGGLG 211 (546)
T ss_pred HHHHHHHHhCcchhhhhcc--ccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHHHHHHhhhc
Confidence 8877654 22211111111 11111122222211 11122222 2245789999999988652 3333333222
Q ss_pred -CccceEEEeccc
Q 039491 534 -PRHINIVLLSAT 545 (1379)
Q Consensus 534 -p~~vqiIlLSAT 545 (1379)
.+..+++..|--
T Consensus 212 ar~~~l~~~ITT~ 224 (546)
T COG4626 212 ARPEGLVVYITTS 224 (546)
T ss_pred cCcCceEEEEecC
Confidence 245667777654
No 276
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.45 E-value=2.4 Score=49.19 Aligned_cols=126 Identities=11% Similarity=0.054 Sum_probs=69.1
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecc--hH-HHHHHHHHHHhccccEEEEecCcccCCCCcee-eecH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAP--IK-TISNQKYRDFSGKFDVGLLTGDVSLRPEASCL-IMTT 489 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsP--tk-aLsnQk~~~~~~~f~VglltGdv~in~~a~Il-V~Tp 489 (1379)
.++.+.+++++|+|||..+.........++.++.+++- .+ +...|+...... .+ ..+. ..++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~-~~-------------~~~~~~~~~ 139 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKT-IG-------------FEVIAVRDE 139 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhh-cC-------------ceEEecCCH
Confidence 56789999999999998766544444444555554433 22 444454332221 11 1111 2356
Q ss_pred HHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHH---HHcCccceEEEecccCCChHHHHHHHh
Q 039491 490 EILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVI---IMLPRHINIVLLSATVPNTVEFADWIG 557 (1379)
Q Consensus 490 EiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii---~~Lp~~vqiIlLSATvpN~~efa~wl~ 557 (1379)
+.+...+..- ....+.++||||-+=+.... ...++++. ....+...++.+|||.. ..+..+++.
T Consensus 140 ~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~--~~~l~el~~~~~~~~~~~~~LVl~a~~~-~~d~~~~~~ 206 (270)
T PRK06731 140 AAMTRALTYF-KEEARVDYILIDTAGKNYRA--SETVEEMIETMGQVEPDYICLTLSASMK-SKDMIEIIT 206 (270)
T ss_pred HHHHHHHHHH-HhcCCCCEEEEECCCCCcCC--HHHHHHHHHHHhhhCCCeEEEEEcCccC-HHHHHHHHH
Confidence 6665544321 11246899999999776422 33444443 33334445778999953 233344444
No 277
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=92.44 E-value=0.58 Score=62.03 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=26.6
Q ss_pred CCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEec
Q 039491 503 IRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLS 543 (1379)
Q Consensus 503 l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLS 543 (1379)
..+.+++||||+|+|.... ...+-.+|...|.++.+|+.+
T Consensus 118 ~~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 3578999999999998532 122333444456778888765
No 278
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.43 E-value=1.7 Score=52.49 Aligned_cols=128 Identities=13% Similarity=0.147 Sum_probs=67.7
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEE-ec-chHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVY-TA-PIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEI 491 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIy-ls-PtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEi 491 (1379)
.++.+++++|||+|||..+.-.......++.++.+ .+ |.+.=+..+.+.+.+..++.+. .+.+|+-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~------------~~~dp~d 272 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI------------VATSPAE 272 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE------------ecCCHHH
Confidence 57788999999999997654444444455655544 33 2333233333333332222111 2346766
Q ss_pred HHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHH---HHcCccceEEEecccCCChHHHHHHHh
Q 039491 492 LRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVI---IMLPRHINIVLLSATVPNTVEFADWIG 557 (1379)
Q Consensus 492 L~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii---~~Lp~~vqiIlLSATvpN~~efa~wl~ 557 (1379)
+...+..-. ..++.++|++|=+-+.... ...++++- ..+.++.-++.+|||. ...+..+.+.
T Consensus 273 L~~al~~l~-~~~~~D~VLIDTAGr~~~d--~~~l~EL~~l~~~~~p~~~~LVLsag~-~~~d~~~i~~ 337 (407)
T PRK12726 273 LEEAVQYMT-YVNCVDHILIDTVGRNYLA--EESVSEISAYTDVVHPDLTCFTFSSGM-KSADVMTILP 337 (407)
T ss_pred HHHHHHHHH-hcCCCCEEEEECCCCCccC--HHHHHHHHHHhhccCCceEEEECCCcc-cHHHHHHHHH
Confidence 655543211 1256899999998765321 22333332 2334445566778874 3334444443
No 279
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.34 E-value=0.91 Score=58.56 Aligned_cols=37 Identities=24% Similarity=0.505 Sum_probs=24.7
Q ss_pred CCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEec
Q 039491 503 IRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLLS 543 (1379)
Q Consensus 503 l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlLS 543 (1379)
..+.++|||||+|++... ....++..+ |.++.+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~----A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKS----AFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHH----HHHHHHHHHHhCCCCcEEEEEe
Confidence 457789999999998742 233444443 5677777655
No 280
>PF13173 AAA_14: AAA domain
Probab=92.32 E-value=0.73 Score=46.91 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=22.6
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEe
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 449 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyl 449 (1379)
+++.+++.||.|+|||..+...+.... ...+++|+
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi 35 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYI 35 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc-ccccceee
Confidence 356789999999999986543333332 33445554
No 281
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.31 E-value=0.31 Score=55.06 Aligned_cols=41 Identities=12% Similarity=0.222 Sum_probs=33.7
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecch
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPI 452 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPt 452 (1379)
+..|..+++.+++|+|||+.+...+...++++.+++|++..
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e 61 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ 61 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 34578899999999999998766667677888999999843
No 282
>PLN03025 replication factor C subunit; Provisional
Probab=92.18 E-value=0.74 Score=54.56 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=15.9
Q ss_pred CcEEEEcCCCccHHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~ 434 (1379)
.++++.||+|+|||..+..
T Consensus 35 ~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILA 53 (319)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999987643
No 283
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=92.17 E-value=1.3 Score=54.98 Aligned_cols=76 Identities=14% Similarity=0.297 Sum_probs=46.4
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHH-h--cCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALAT-K--HCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEIL 492 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l-~--~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL 492 (1379)
..+++.||+|+|||..+. +|+..+ . .+.+++|+.. ..+.++....++. + +.+.+
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~~~~~~v~yi~~-~~f~~~~~~~~~~--------~-------------~~~~f 187 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDLRVMYITS-EKFLNDLVDSMKE--------G-------------KLNEF 187 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHhc--------c-------------cHHHH
Confidence 468999999999998653 455444 2 2467888765 3444444333321 0 12233
Q ss_pred HHHHhcCcccCCCccEEEEeccCCCCCc
Q 039491 493 RSMLYRGADIIRDIEWVIFDEVHYVNDI 520 (1379)
Q Consensus 493 ~smL~~~~~~l~~v~lVI~DEaH~l~d~ 520 (1379)
...+. .+.+++|+||+|.+.+.
T Consensus 188 ~~~~~------~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 188 REKYR------KKVDVLLIDDVQFLIGK 209 (440)
T ss_pred HHHHH------hcCCEEEEechhhhcCc
Confidence 33221 25789999999988654
No 284
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.05 E-value=0.55 Score=62.60 Aligned_cols=128 Identities=20% Similarity=0.166 Sum_probs=88.6
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHH------------------hcCCcEEEecchHHHHHHHHHHHhccc----cEEE
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALAT------------------KHCTRAVYTAPIKTISNQKYRDFSGKF----DVGL 471 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l------------------~~~~raIylsPtkaLsnQk~~~~~~~f----~Vgl 471 (1379)
.|+.++.+-.-|.|||..-......-+ ..-+-+||++|. ++-.||+.++.... .|-+
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~~ 451 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVLL 451 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEEE
Confidence 356788888999999976433333222 112468999996 77899999998876 4555
Q ss_pred EecCccc-------CCCCceeeecHHHHHHHHhcCcc------------------cCCCcc--EEEEeccCCCCCccchh
Q 039491 472 LTGDVSL-------RPEASCLIMTTEILRSMLYRGAD------------------IIRDIE--WVIFDEVHYVNDIERGV 524 (1379)
Q Consensus 472 ltGdv~i-------n~~a~IlV~TpEiL~smL~~~~~------------------~l~~v~--lVI~DEaH~l~d~~rG~ 524 (1379)
+.|=... --+++|+++|+.+|++-++...+ .+-.+. -|++|||.++-. -..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 5553332 12589999999999988775311 111223 389999999865 255
Q ss_pred HHHHHHHHcCccceEEEeccc
Q 039491 525 VWEEVIIMLPRHINIVLLSAT 545 (1379)
Q Consensus 525 v~eeii~~Lp~~vqiIlLSAT 545 (1379)
...+++.+|+. +...+.|+|
T Consensus 530 ~~a~M~~rL~~-in~W~VTGT 549 (1394)
T KOG0298|consen 530 AAAEMVRRLHA-INRWCVTGT 549 (1394)
T ss_pred HHHHHHHHhhh-hceeeecCC
Confidence 56667777764 788999999
No 285
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=92.02 E-value=0.52 Score=61.50 Aligned_cols=85 Identities=18% Similarity=0.144 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc----CCcEEEecchHHHHHHHHHHHhccccEEEEecCc
Q 039491 401 LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH----CTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDV 476 (1379)
Q Consensus 401 L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~----~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv 476 (1379)
|++-|++|+.+ ...+++|.|..|||||.+...-|+..+.+ ..++++++.|+..+.+..+++.+.+. .
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~------~- 72 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG------K- 72 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC------c-
Confidence 78999999875 34589999999999999887778777743 36799999999999998888877541 1
Q ss_pred ccCCCCceeeecHHHHHHHH
Q 039491 477 SLRPEASCLIMTTEILRSML 496 (1379)
Q Consensus 477 ~in~~a~IlV~TpEiL~smL 496 (1379)
.....+.|+|-..|...+
T Consensus 73 --~~~~~v~v~TfHs~a~~i 90 (664)
T TIGR01074 73 --GEARGLTISTFHTLGLDI 90 (664)
T ss_pred --cccCCeEEEeHHHHHHHH
Confidence 012457899998875544
No 286
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.00 E-value=0.34 Score=57.08 Aligned_cols=77 Identities=17% Similarity=0.323 Sum_probs=50.4
Q ss_pred hhhhhccCCCCCcccCCCCCCccccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCC
Q 039491 346 LDEILSVKSGGTTSILDDGGGQQQKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHT 424 (1379)
Q Consensus 346 ~d~~l~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApT 424 (1379)
+-++||.+........ .....+..+++.++..+.-+..+++.+ +.|.. |.-|++--| ..-+-|++.+|+
T Consensus 125 Iv~vLp~~~Dp~V~~M--~v~e~PdvtY~dIGGL~~Qi~EirE~V-----ELPL~~PElF~~~GI---~PPKGVLLYGPP 194 (406)
T COG1222 125 IVRVLPPEVDPRVSVM--EVEEKPDVTYEDIGGLDEQIQEIREVV-----ELPLKNPELFEELGI---DPPKGVLLYGPP 194 (406)
T ss_pred eeeeCCCccCchhhee--eeccCCCCChhhccCHHHHHHHHHHHh-----cccccCHHHHHHcCC---CCCCceEeeCCC
Confidence 4556665554332111 111335678999999888888888843 45555 556655443 446789999999
Q ss_pred CccHHHHH
Q 039491 425 SAGKTVVA 432 (1379)
Q Consensus 425 GSGKTlva 432 (1379)
|+|||+.|
T Consensus 195 GTGKTLLA 202 (406)
T COG1222 195 GTGKTLLA 202 (406)
T ss_pred CCcHHHHH
Confidence 99999864
No 287
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=91.94 E-value=0.81 Score=52.62 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=17.0
Q ss_pred CcEEEEcCCCccHHHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~a 435 (1379)
.++++.+|+|+|||.+|...
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 57899999999999987544
No 288
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.93 E-value=0.8 Score=60.37 Aligned_cols=35 Identities=23% Similarity=0.497 Sum_probs=24.6
Q ss_pred CCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEe
Q 039491 504 RDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLL 542 (1379)
Q Consensus 504 ~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlL 542 (1379)
.+.+++||||||+|. ....+.++..+ |.++++|+.
T Consensus 118 gk~KViIIDEAh~LT----~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLS----RSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcC----HHHHHHHHHHHhccCCCeEEEEE
Confidence 567899999999997 33455555554 456777775
No 289
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=91.92 E-value=0.86 Score=48.67 Aligned_cols=114 Identities=13% Similarity=0.131 Sum_probs=58.8
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHHhcCC--cEEEecchHHHHHHHHHHHhcc-c-cEEEEecCcccCCCCceeeecHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALATKHCT--RAVYTAPIKTISNQKYRDFSGK-F-DVGLLTGDVSLRPEASCLIMTTEI 491 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l~~~~--raIylsPtkaLsnQk~~~~~~~-f-~VglltGdv~in~~a~IlV~TpEi 491 (1379)
...++.+|.|+||+..+...+...+.... ..-..++. .+.+... . ++..+..+..- .++-| +.
T Consensus 20 ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~-------c~~~~~~~~~d~~~~~~~~~~---~~i~i---~~ 86 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRS-------CRRIEEGNHPDFIIIKPDKKK---KSIKI---DQ 86 (162)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHH-------HHHHHTT-CTTEEEEETTTSS---SSBSH---HH
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHH-------HHHHHhccCcceEEEeccccc---chhhH---HH
Confidence 35799999999999876555444442221 11111111 1222222 2 66666443221 12333 44
Q ss_pred HHHHHhcC--cccCCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEecccC
Q 039491 492 LRSMLYRG--ADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLLSATV 546 (1379)
Q Consensus 492 L~smL~~~--~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlLSATv 546 (1379)
++.+...- ...-...+++||||||.|+. .....++..| |.++.+|++|-..
T Consensus 87 ir~i~~~~~~~~~~~~~KviiI~~ad~l~~----~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 87 IREIIEFLSLSPSEGKYKVIIIDEADKLTE----EAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp HHHHHHHCTSS-TTSSSEEEEEETGGGS-H----HHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred HHHHHHHHHHHHhcCCceEEEeehHhhhhH----HHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 44444321 12235789999999999984 3344444443 5567777776543
No 290
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=91.89 E-value=0.46 Score=59.05 Aligned_cols=76 Identities=14% Similarity=0.215 Sum_probs=48.6
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHHh---cCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALATK---HCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEIL 492 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l~---~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL 492 (1379)
..+++.|++|+|||..+ .+|...+. .+.+++|+.+ ..+.++....+... + -+.+.+
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l~~~--------~-----------~~~~~~ 200 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAVDILQKT--------H-----------KEIEQF 200 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHHHh--------h-----------hHHHHH
Confidence 35899999999999765 46655543 4678888776 45555554444320 0 111222
Q ss_pred HHHHhcCcccCCCccEEEEeccCCCCC
Q 039491 493 RSMLYRGADIIRDIEWVIFDEVHYVND 519 (1379)
Q Consensus 493 ~smL~~~~~~l~~v~lVI~DEaH~l~d 519 (1379)
+. .+++.+++|+||+|.+..
T Consensus 201 ~~-------~~~~~dvLiIDDiq~l~~ 220 (450)
T PRK14087 201 KN-------EICQNDVLIIDDVQFLSY 220 (450)
T ss_pred HH-------HhccCCEEEEeccccccC
Confidence 22 245778999999999864
No 291
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.81 E-value=0.69 Score=59.07 Aligned_cols=169 Identities=21% Similarity=0.313 Sum_probs=86.8
Q ss_pred CCccccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHH-HHCCCcEEEEcCCCccHHHHHHHHHHHHHhc
Q 039491 365 GGQQQKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYY-LENGDSVFVAAHTSAGKTVVAEYAFALATKH 442 (1379)
Q Consensus 365 ~~~~~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~-L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~ 442 (1379)
+|+.++..|.+++..++..+.+.+-+. .|.+ + +.+.. +.+..-+++.+|.|+|||++|- |++...
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIq-----lPL~hp-----eLfssglrkRSGILLYGPPGTGKTLlAK-AVATEc-- 729 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQ-----LPLKHP-----ELFSSGLRKRSGILLYGPPGTGKTLLAK-AVATEC-- 729 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhc-----CcccCh-----hhhhccccccceeEEECCCCCchHHHHH-HHHhhc--
Confidence 356678899999999888777765221 1211 1 22222 2234568999999999998741 221111
Q ss_pred CCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCC----
Q 039491 443 CTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVN---- 518 (1379)
Q Consensus 443 ~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~---- 518 (1379)
.-..+-+-=-+|.|- +.|.. -+-+|....+... ..--.|.|||.|-+.
T Consensus 730 -sL~FlSVKGPELLNM-------------YVGqS------------E~NVR~VFerAR~--A~PCVIFFDELDSlAP~RG 781 (953)
T KOG0736|consen 730 -SLNFLSVKGPELLNM-------------YVGQS------------EENVREVFERARS--AAPCVIFFDELDSLAPNRG 781 (953)
T ss_pred -eeeEEeecCHHHHHH-------------Hhcch------------HHHHHHHHHHhhc--cCCeEEEeccccccCccCC
Confidence 000111111122111 11110 1123333332211 123467899999874
Q ss_pred -CccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeec
Q 039491 519 -DIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVC 590 (1379)
Q Consensus 519 -d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~ 590 (1379)
..+-|-|+..+...|-.. +=+||- ...++++|+....||--|.-.+..++.+-+++
T Consensus 782 ~sGDSGGVMDRVVSQLLAE--LDgls~--------------~~s~~VFViGATNRPDLLDpALLRPGRFDKLv 838 (953)
T KOG0736|consen 782 RSGDSGGVMDRVVSQLLAE--LDGLSD--------------SSSQDVFVIGATNRPDLLDPALLRPGRFDKLV 838 (953)
T ss_pred CCCCccccHHHHHHHHHHH--hhcccC--------------CCCCceEEEecCCCccccChhhcCCCccceeE
Confidence 223466777776554210 001111 12457888888889887777777666444433
No 292
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.70 E-value=1.3 Score=56.05 Aligned_cols=38 Identities=24% Similarity=0.481 Sum_probs=25.5
Q ss_pred cCCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEec
Q 039491 502 IIRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLLS 543 (1379)
Q Consensus 502 ~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlLS 543 (1379)
...+.+++||||+|.|... ..+.++..+ |.++.+|+.|
T Consensus 116 ~~~~~kVvIIDEad~ls~~----a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 116 TRGRFKVYIIDEVHMLSKS----AFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred ccCCceEEEEcCcccCCHH----HHHHHHHHHhCCCCCEEEEEEe
Confidence 3467889999999999742 334444443 4567777765
No 293
>PRK06620 hypothetical protein; Validated
Probab=91.66 E-value=0.74 Score=51.50 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=15.2
Q ss_pred CcEEEEcCCCccHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae 433 (1379)
.++++.+|+|+|||..+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999997643
No 294
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.63 E-value=1.4 Score=56.27 Aligned_cols=37 Identities=19% Similarity=0.410 Sum_probs=26.0
Q ss_pred CCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEec
Q 039491 503 IRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLLS 543 (1379)
Q Consensus 503 l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlLS 543 (1379)
..+.+++||||||+|... ..+.++..+ |.++.+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~----A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA----GFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHH----HHHHHHHHHhcCCCCeEEEEEe
Confidence 467899999999999743 344444444 5577777766
No 295
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=91.60 E-value=0.78 Score=55.05 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=18.5
Q ss_pred CcEEEEcCCCccHHHHHHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFAL 438 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~ 438 (1379)
.+++|.||+|+|||.++...+..
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~~ 63 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMKE 63 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999876555443
No 296
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=91.54 E-value=0.77 Score=56.58 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=30.7
Q ss_pred HHHCCCcEEEEcCCCccHHHHHHHHHHHH-HhcCCcEEEec
Q 039491 411 YLENGDSVFVAAHTSAGKTVVAEYAFALA-TKHCTRAVYTA 450 (1379)
Q Consensus 411 ~L~~g~sVlV~ApTGSGKTlvae~aI~~~-l~~~~raIyls 450 (1379)
-+..|+-++|+|+||+|||..+.-.+... .+++.+++|++
T Consensus 190 G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS 230 (421)
T TIGR03600 190 GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS 230 (421)
T ss_pred CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 35567889999999999998765554443 36788899987
No 297
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=91.48 E-value=0.96 Score=52.80 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCccHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae 433 (1379)
+.++++.+|+|+|||.+|.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4589999999999999874
No 298
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.44 E-value=1.6 Score=55.04 Aligned_cols=37 Identities=24% Similarity=0.446 Sum_probs=23.9
Q ss_pred cCCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEe
Q 039491 502 IIRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLL 542 (1379)
Q Consensus 502 ~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlL 542 (1379)
...+..+|||||+|++.. ..++.++..+ |+++.+|+.
T Consensus 125 ~~~~~KVvIIDEa~~Ls~----~a~naLLk~LEepp~~~vfI~a 164 (507)
T PRK06645 125 LQGKHKIFIIDEVHMLSK----GAFNALLKTLEEPPPHIIFIFA 164 (507)
T ss_pred ccCCcEEEEEEChhhcCH----HHHHHHHHHHhhcCCCEEEEEE
Confidence 456789999999999973 3455555444 344444443
No 299
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=91.37 E-value=0.24 Score=62.06 Aligned_cols=57 Identities=18% Similarity=0.360 Sum_probs=36.1
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae 433 (1379)
+...|++++..+..+..+.+.+- +||. +.-|+.-. +...+.+++.+|+|+|||.++-
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~-----lp~~~~~l~~~~g---l~~p~GILLyGPPGTGKT~LAK 234 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVE-----LPFLHPELYREYD---LKPPKGVLLYGPPGCGKTLIAK 234 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHH-----HHhhCHHHHHhcc---CCCCcceEEECCCCCcHHHHHH
Confidence 34679999877777777766432 2322 22222211 2235679999999999998653
No 300
>CHL00181 cbbX CbbX; Provisional
Probab=91.22 E-value=1.2 Score=52.24 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=19.0
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFAL 438 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~ 438 (1379)
+.++++.+|+|+|||.+|-.....
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 557999999999999987655433
No 301
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.04 E-value=0.39 Score=59.18 Aligned_cols=48 Identities=27% Similarity=0.304 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHCCC--cEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEe
Q 039491 401 LDNFQKEAIYYLENGD--SVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 449 (1379)
Q Consensus 401 L~~~Q~eAI~~L~~g~--sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyl 449 (1379)
++++|.+.+..+.+.. =++|.+|||||||+. +|+++..+....+=|++
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~~~nI~T 291 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTPERNIIT 291 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCCCceEEE
Confidence 4788999998876543 478999999999986 57777776555443443
No 302
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=91.02 E-value=0.29 Score=57.89 Aligned_cols=47 Identities=23% Similarity=0.196 Sum_probs=39.9
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQK 459 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk 459 (1379)
..|.-+.|.+|+|+|||..+...+....+.+.+++|+..-.++..+.
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~ 99 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVY 99 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHH
Confidence 34678899999999999998888888888899999998877776653
No 303
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.98 E-value=1.6 Score=52.77 Aligned_cols=37 Identities=24% Similarity=0.499 Sum_probs=24.1
Q ss_pred CCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEec
Q 039491 503 IRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLLS 543 (1379)
Q Consensus 503 l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlLS 543 (1379)
..+..++||||+|.+.+ ..++.++..+ |.++.+|+.+
T Consensus 117 ~~~~kviIIDEa~~l~~----~a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 117 KSRFKVYLIDEVHMLSR----HSFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred cCCceEEEEEChhhcCH----HHHHHHHHHHhcCCCCeEEEEEc
Confidence 35678999999999974 2344444443 4566666654
No 304
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=90.94 E-value=0.69 Score=61.03 Aligned_cols=85 Identities=15% Similarity=0.086 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc----CCcEEEecchHHHHHHHHHHHhccccEEEEecC
Q 039491 400 ELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH----CTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGD 475 (1379)
Q Consensus 400 eL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~----~~raIylsPtkaLsnQk~~~~~~~f~VglltGd 475 (1379)
.|++-|++|+.+. ...++|.|..|||||.+...-|+..+.. ..++++++-|+..+....+++.+.+ |.
T Consensus 4 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~------~~ 75 (726)
T TIGR01073 4 HLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLL------GP 75 (726)
T ss_pred ccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHh------cc
Confidence 3899999999864 4579999999999999988888877753 2579999999999988888887653 11
Q ss_pred cccCCCCceeeecHHHHHHHH
Q 039491 476 VSLRPEASCLIMTTEILRSML 496 (1379)
Q Consensus 476 v~in~~a~IlV~TpEiL~smL 496 (1379)
....+.|+|-..|...+
T Consensus 76 ----~~~~~~i~TFHs~~~~i 92 (726)
T TIGR01073 76 ----VAEDIWISTFHSMCVRI 92 (726)
T ss_pred ----ccCCcEEEcHHHHHHHH
Confidence 12357899998775443
No 305
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=90.88 E-value=2.2 Score=53.94 Aligned_cols=109 Identities=13% Similarity=0.171 Sum_probs=56.3
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHh-cC--CcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATK-HC--TRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILR 493 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~-~~--~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL~ 493 (1379)
..+++||.|+|||.++...+..... .+ ......++. .+.+...++..++.++... ++ ..+.++
T Consensus 38 ayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~-------C~~~~~~~h~dv~eldaas----~~---gId~IR 103 (535)
T PRK08451 38 AYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ-------CQSALENRHIDIIEMDAAS----NR---GIDDIR 103 (535)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH-------HHHHhhcCCCeEEEecccc----cc---CHHHHH
Confidence 4589999999999876543333221 11 112222222 1222222222233332211 11 234555
Q ss_pred HHHhcC--cccCCCccEEEEeccCCCCCccchhHHHHHHHH---cCccceEEEec
Q 039491 494 SMLYRG--ADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIM---LPRHINIVLLS 543 (1379)
Q Consensus 494 smL~~~--~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~---Lp~~vqiIlLS 543 (1379)
.++... .....+.++|||||||+|... ..+.++.. -|+++.+|+.+
T Consensus 104 elie~~~~~P~~~~~KVvIIDEad~Lt~~----A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 104 ELIEQTKYKPSMARFKIFIIDEVHMLTKE----AFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred HHHHHHhhCcccCCeEEEEEECcccCCHH----HHHHHHHHHhhcCCceEEEEEE
Confidence 555331 234567899999999999742 23334433 36677777765
No 306
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=90.80 E-value=1.7 Score=53.64 Aligned_cols=119 Identities=15% Similarity=0.159 Sum_probs=63.1
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecc--hHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAP--IKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEIL 492 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsP--tkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL 492 (1379)
...+++++++|+|||.++........+.+.+++++.. .+.-+.++.+.+.+..++-+.. ... ..+ ..+++
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~-~~~---~~d----~~~i~ 166 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYG-DPD---NKD----AVEIA 166 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEe-cCC---ccC----HHHHH
Confidence 3468899999999998765444444455666665542 2343444444444433222211 100 000 12344
Q ss_pred HHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHH---HHHcCccceEEEecccCC
Q 039491 493 RSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEV---IIMLPRHINIVLLSATVP 547 (1379)
Q Consensus 493 ~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eei---i~~Lp~~vqiIlLSATvp 547 (1379)
...+... .+.++||+|.+-+.... ...++++ .....++.-++.++||..
T Consensus 167 ~~al~~~----~~~DvVIIDTAGr~~~d--~~lm~El~~l~~~~~pdevlLVvda~~g 218 (437)
T PRK00771 167 KEGLEKF----KKADVIIVDTAGRHALE--EDLIEEMKEIKEAVKPDEVLLVIDATIG 218 (437)
T ss_pred HHHHHHh----hcCCEEEEECCCcccch--HHHHHHHHHHHHHhcccceeEEEecccc
Confidence 4444332 23489999999554321 2333333 233445566788888865
No 307
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=90.79 E-value=0.85 Score=53.21 Aligned_cols=86 Identities=17% Similarity=0.236 Sum_probs=46.8
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHhc-C-CcEEEe-cch-HHHHHHHHHHHhccccEEEEecCcccCCCCceeeec
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATKH-C-TRAVYT-API-KTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMT 488 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~~-~-~raIyl-sPt-kaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~T 488 (1379)
..+..+++++|||+|||..+.-.+.....+ + .++.++ .-+ +.-+.++...+.+...+-+ ..+.+
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~------------~~~~~ 259 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPV------------KVARD 259 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCce------------eccCC
Confidence 356788999999999997654333333332 3 444433 322 3333334444443321111 11235
Q ss_pred HHHHHHHHhcCcccCCCccEEEEecc
Q 039491 489 TEILRSMLYRGADIIRDIEWVIFDEV 514 (1379)
Q Consensus 489 pEiL~smL~~~~~~l~~v~lVI~DEa 514 (1379)
+..+...+.+ +.+.++||||.+
T Consensus 260 ~~~l~~~l~~----~~~~d~vliDt~ 281 (282)
T TIGR03499 260 PKELRKALDR----LRDKDLILIDTA 281 (282)
T ss_pred HHHHHHHHHH----ccCCCEEEEeCC
Confidence 5556655543 356799999975
No 308
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.71 E-value=1.3 Score=56.72 Aligned_cols=36 Identities=17% Similarity=0.419 Sum_probs=23.5
Q ss_pred CCccEEEEeccCCCCCccchhHHHHHHHH---cCccceEEEec
Q 039491 504 RDIEWVIFDEVHYVNDIERGVVWEEVIIM---LPRHINIVLLS 543 (1379)
Q Consensus 504 ~~v~lVI~DEaH~l~d~~rG~v~eeii~~---Lp~~vqiIlLS 543 (1379)
.+.+++||||||+|... ....++.. -|.++.+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~----A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTH----SFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHH----HHHHHHHHHhcCCCCcEEEEEE
Confidence 46789999999999743 23334333 35566666644
No 309
>PRK11823 DNA repair protein RadA; Provisional
Probab=90.70 E-value=1.2 Score=55.45 Aligned_cols=90 Identities=12% Similarity=0.135 Sum_probs=55.3
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeee---cH
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIM---TT 489 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~---Tp 489 (1379)
..|..+++.+++|+|||..+...+....+++.+++|++-- +-..|...+..... .-.. ++.+. .-
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E-es~~qi~~ra~rlg---~~~~--------~l~~~~e~~l 145 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE-ESASQIKLRAERLG---LPSD--------NLYLLAETNL 145 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc-ccHHHHHHHHHHcC---CChh--------cEEEeCCCCH
Confidence 3467889999999999987666655555678899999854 33345554444321 1000 02222 12
Q ss_pred HHHHHHHhcCcccCCCccEEEEeccCCCCC
Q 039491 490 EILRSMLYRGADIIRDIEWVIFDEVHYVND 519 (1379)
Q Consensus 490 EiL~smL~~~~~~l~~v~lVI~DEaH~l~d 519 (1379)
+.+...+.. .+.++||+|+++.+..
T Consensus 146 ~~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 146 EAILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred HHHHHHHHh-----hCCCEEEEechhhhcc
Confidence 444444432 3578999999997753
No 310
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.67 E-value=2.7 Score=44.88 Aligned_cols=117 Identities=13% Similarity=0.146 Sum_probs=58.4
Q ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec--chHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHHHHH
Q 039491 418 VFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA--PIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRSM 495 (1379)
Q Consensus 418 VlV~ApTGSGKTlvae~aI~~~l~~~~raIyls--PtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL~sm 495 (1379)
+++.+++|+|||..+.-........+.+++++. +.+.-.......+.+...+.+....... + -++.+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~----~~~~~~~~ 74 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGK----D----PVSIAKRA 74 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCC----C----HHHHHHHH
Confidence 678999999999986554444445667776654 4443333333333333344444332111 1 11222222
Q ss_pred HhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHH---cCccceEEEecccC
Q 039491 496 LYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIM---LPRHINIVLLSATV 546 (1379)
Q Consensus 496 L~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~---Lp~~vqiIlLSATv 546 (1379)
+.. ..-.+.++||+|......-. ...++++-.. .....-++.++|+.
T Consensus 75 ~~~--~~~~~~d~viiDt~g~~~~~--~~~l~~l~~l~~~~~~~~~~lVv~~~~ 124 (173)
T cd03115 75 IEH--AREENFDVVIVDTAGRLQID--ENLMEELKKIKRVVKPDEVLLVVDAMT 124 (173)
T ss_pred HHH--HHhCCCCEEEEECcccchhh--HHHHHHHHHHHhhcCCCeEEEEEECCC
Confidence 211 01246789999998876421 2223333222 22344566667753
No 311
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=90.55 E-value=1 Score=52.67 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=14.9
Q ss_pred CcEEEEcCCCccHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlva 432 (1379)
.++++.+|+|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999764
No 312
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.54 E-value=1.3 Score=55.94 Aligned_cols=125 Identities=14% Similarity=0.129 Sum_probs=63.0
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh-cC--Cc
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK-HC--TR 445 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~-~~--~r 445 (1379)
...+|.++...++....+...+..- .-+..+++++|.|+|||.++. +++..+. .+ ..
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~-------------------~l~ha~Lf~GppGtGKTTlA~-~lA~~l~c~~~~~~ 68 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQG-------------------RLGHAYLFSGPRGVGKTTTAR-LIAMAVNCSGEDPK 68 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcC-------------------CCCeEEEEECCCCCCHHHHHH-HHHHHHhccCCCCC
Confidence 3456777776666655555422110 002345999999999999875 4444442 11 22
Q ss_pred EEEecchHHHHHHHHHHHhccc--cEEEEecCcccCCCCceeeecHHHHHHHHhc--CcccCCCccEEEEeccCCCCCcc
Q 039491 446 AVYTAPIKTISNQKYRDFSGKF--DVGLLTGDVSLRPEASCLIMTTEILRSMLYR--GADIIRDIEWVIFDEVHYVNDIE 521 (1379)
Q Consensus 446 aIylsPtkaLsnQk~~~~~~~f--~VglltGdv~in~~a~IlV~TpEiL~smL~~--~~~~l~~v~lVI~DEaH~l~d~~ 521 (1379)
....++.. +.+.... ++-.+.+.. +. ..+.++.+... ......+..+|||||+|++..
T Consensus 69 ~cg~C~sc-------~~i~~~~h~dv~el~~~~------~~---~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~-- 130 (504)
T PRK14963 69 PCGECESC-------LAVRRGAHPDVLEIDAAS------NN---SVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK-- 130 (504)
T ss_pred CCCcChhh-------HHHhcCCCCceEEecccc------cC---CHHHHHHHHHHHhhccccCCCeEEEEECccccCH--
Confidence 33333321 1122111 444333321 11 12333332211 112456788999999998863
Q ss_pred chhHHHHHHHHc
Q 039491 522 RGVVWEEVIIML 533 (1379)
Q Consensus 522 rG~v~eeii~~L 533 (1379)
..+..++..+
T Consensus 131 --~a~naLLk~L 140 (504)
T PRK14963 131 --SAFNALLKTL 140 (504)
T ss_pred --HHHHHHHHHH
Confidence 3355555554
No 313
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=90.49 E-value=0.46 Score=56.32 Aligned_cols=55 Identities=20% Similarity=0.189 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHH-HCCCcEEEEcCCCccHHHHHHHHHHHHH---hcCCcEEEecchHHHH
Q 039491 401 LDNFQKEAIYYL-ENGDSVFVAAHTSAGKTVVAEYAFALAT---KHCTRAVYTAPIKTIS 456 (1379)
Q Consensus 401 L~~~Q~eAI~~L-~~g~sVlV~ApTGSGKTlvae~aI~~~l---~~~~raIylsPtkaLs 456 (1379)
+++.|.+.+..+ ..+.+++|+++||||||... .+++..+ ....|++.+-...+|.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASAPEDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCceEEEecCCcccc
Confidence 567788777664 56779999999999999864 5665555 3456777777777763
No 314
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=90.49 E-value=1.4 Score=56.37 Aligned_cols=74 Identities=18% Similarity=0.373 Sum_probs=47.2
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHh---cCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATK---HCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILR 493 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~---~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL~ 493 (1379)
.+++.+++|+|||-.+. ||...+. .+.+++|+.- ..+.++....+.. ...+.+.
T Consensus 316 pL~LyG~sGsGKTHLL~-AIa~~a~~~~~g~~V~Yita-eef~~el~~al~~---------------------~~~~~f~ 372 (617)
T PRK14086 316 PLFIYGESGLGKTHLLH-AIGHYARRLYPGTRVRYVSS-EEFTNEFINSIRD---------------------GKGDSFR 372 (617)
T ss_pred cEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEeeH-HHHHHHHHHHHHh---------------------ccHHHHH
Confidence 48999999999997643 4444442 3677777764 4555554444432 0122333
Q ss_pred HHHhcCcccCCCccEEEEeccCCCCCc
Q 039491 494 SMLYRGADIIRDIEWVIFDEVHYVNDI 520 (1379)
Q Consensus 494 smL~~~~~~l~~v~lVI~DEaH~l~d~ 520 (1379)
.. ++++++||||++|.+...
T Consensus 373 ~~-------y~~~DLLlIDDIq~l~gk 392 (617)
T PRK14086 373 RR-------YREMDILLVDDIQFLEDK 392 (617)
T ss_pred HH-------hhcCCEEEEehhccccCC
Confidence 22 456899999999999754
No 315
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=90.46 E-value=0.66 Score=50.84 Aligned_cols=140 Identities=17% Similarity=0.109 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHH-HHHHHhccccEEEEecCcc--cCC-CCceeeecH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQ-KYRDFSGKFDVGLLTGDVS--LRP-EASCLIMTT 489 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQ-k~~~~~~~f~VglltGdv~--in~-~a~IlV~Tp 489 (1379)
...++.|..++|-|||.+|.--...++.+|.+|+++-=.|--..+ -..-++....+-+...+.. ... +..- ..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e---~~ 97 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRER---DI 97 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHH---HH
Confidence 456899999999999999877778888899999998655532111 1122222112333322211 111 1000 00
Q ss_pred HHHHHHHhcCcc--cCCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEecccCCCh-HHHHHHHh
Q 039491 490 EILRSMLYRGAD--IIRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLLSATVPNT-VEFADWIG 557 (1379)
Q Consensus 490 EiL~smL~~~~~--~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlLSATvpN~-~efa~wl~ 557 (1379)
......+..... .-..+++||+||+=+..+.+ -...++++..| |+..-+|+---..|.. .+.|+.+.
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~g-li~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlVT 170 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYG-YLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLVT 170 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCC-CccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchhe
Confidence 111111211111 12578999999998876542 12244555444 5555555443334432 25555543
No 316
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.44 E-value=1.9 Score=55.42 Aligned_cols=37 Identities=22% Similarity=0.455 Sum_probs=25.5
Q ss_pred CCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEec
Q 039491 503 IRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLLS 543 (1379)
Q Consensus 503 l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlLS 543 (1379)
....+++||||||+|+. ..+..++..+ |.++.+|+.+
T Consensus 122 ~g~~KV~IIDEvh~Ls~----~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTN----TAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred cCCceEEEEEChhhCCH----HHHHHHHHhcccCCCCeEEEEEE
Confidence 35789999999999984 3355555555 4566666654
No 317
>PF13871 Helicase_C_4: Helicase_C-like
Probab=90.27 E-value=0.3 Score=56.43 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=57.3
Q ss_pred HHHhcCCCeeEEEecccccccCCCCCceEEEccccc----cCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCC
Q 039491 767 EMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRK----FDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEI 842 (1379)
Q Consensus 767 e~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~k----fDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~ 842 (1379)
-..|.+|..+|+|.|+..+.||.+.+..-+-+..++ ... |++....+|..||+.|.|+-. .-.|.++..+.
T Consensus 54 ~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~----pwsad~aiQ~~GR~hRsnQ~~-~P~y~~l~t~~ 128 (278)
T PF13871_consen 54 KQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLEL----PWSADKAIQQFGRTHRSNQVS-APEYRFLVTDL 128 (278)
T ss_pred HHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeC----CCCHHHHHHHhcccccccccc-CCEEEEeecCC
Confidence 358999999999999999999999864332221111 334 899999999999999999853 33444454455
Q ss_pred CCHHHHHHHHh
Q 039491 843 PGESDLKHIIV 853 (1379)
Q Consensus 843 ~~~~~l~~li~ 853 (1379)
+-+..+..++.
T Consensus 129 ~gE~Rfas~va 139 (278)
T PF13871_consen 129 PGERRFASTVA 139 (278)
T ss_pred HHHHHHHHHHH
Confidence 44455554444
No 318
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=90.22 E-value=0.37 Score=52.30 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=30.6
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHH
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQ 458 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQ 458 (1379)
+.++.++++.++||+|||..|.-....++..+..++|+. ...|.++
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~-~~~L~~~ 89 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT-ASDLLDE 89 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE-HHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee-cCceecc
Confidence 466889999999999999987655555667777777764 4455544
No 319
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=90.20 E-value=1.1 Score=53.85 Aligned_cols=39 Identities=23% Similarity=0.390 Sum_probs=25.6
Q ss_pred cEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChH
Q 039491 507 EWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTV 550 (1379)
Q Consensus 507 ~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~ 550 (1379)
-++++||+|+++... -+.++-++ .+-.+++.-||-.|+.
T Consensus 106 tiLflDEIHRfnK~Q----QD~lLp~v-E~G~iilIGATTENPs 144 (436)
T COG2256 106 TILFLDEIHRFNKAQ----QDALLPHV-ENGTIILIGATTENPS 144 (436)
T ss_pred eEEEEehhhhcChhh----hhhhhhhh-cCCeEEEEeccCCCCC
Confidence 478999999998432 12222222 3467899999977653
No 320
>PTZ00293 thymidine kinase; Provisional
Probab=89.99 E-value=1.3 Score=49.46 Aligned_cols=86 Identities=13% Similarity=0.085 Sum_probs=52.1
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEEEecCcccCCCCceeeecHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVSLRPEASCLIMTTEILR 493 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~in~~a~IlV~TpEiL~ 493 (1379)
|.=.++.+|.+||||.-.+-.+......+.+++++-|...= .| ..+.+..-..+..++ +.|....-+.
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~Dt----------R~~~~~~I~Sh~g~~~~a-~~v~~~~e~~ 72 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSKDT----------RYSDEQNISSHDKQMLKA-IKVSKLKEVL 72 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEecccc----------cCCCCCcEEecCCCccee-EEcCCHHHHH
Confidence 45568899999999986666666666778899999886321 11 111111111122222 4444433333
Q ss_pred HHHhcCcccCCCccEEEEeccCCCC
Q 039491 494 SMLYRGADIIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 494 smL~~~~~~l~~v~lVI~DEaH~l~ 518 (1379)
.. ++++++|++||+|.+.
T Consensus 73 ~~-------~~~~dvI~IDEaQFf~ 90 (211)
T PTZ00293 73 ET-------AKNYDVIAIDEGQFFP 90 (211)
T ss_pred Hh-------ccCCCEEEEEchHhhH
Confidence 22 2568999999999873
No 321
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=89.95 E-value=0.82 Score=48.78 Aligned_cols=135 Identities=19% Similarity=0.129 Sum_probs=69.7
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHH-HHHHhccccEEEEecCcc--cCCCCceeeecHHH--
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQK-YRDFSGKFDVGLLTGDVS--LRPEASCLIMTTEI-- 491 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk-~~~~~~~f~VglltGdv~--in~~a~IlV~TpEi-- 491 (1379)
-+.|-.++|.|||.+|.--...+..+|.+++++.=.|.-...= ..-+++.-.+-+...+.. ...+ + ..+.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~-~----~~~~~~ 78 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTE-N----DEEDIA 78 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCC-C----hHHHHH
Confidence 4667788899999998777777888999999954444321100 111121112333322221 1110 0 1111
Q ss_pred -HHHHHhc--CcccCCCccEEEEeccCCCCCccchhHHHH---HHHHcCccceEEEecccCCCh-HHHHHHHh
Q 039491 492 -LRSMLYR--GADIIRDIEWVIFDEVHYVNDIERGVVWEE---VIIMLPRHINIVLLSATVPNT-VEFADWIG 557 (1379)
Q Consensus 492 -L~smL~~--~~~~l~~v~lVI~DEaH~l~d~~rG~v~ee---ii~~Lp~~vqiIlLSATvpN~-~efa~wl~ 557 (1379)
....+.. .......+++||+||+=+..+.+. ...++ ++..-|++.-+|+-+-..|.. .+.|+.+.
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gl-i~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~VT 150 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGL-LDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLVT 150 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCC-CCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCceee
Confidence 1111111 111235789999999988754321 12333 444456677777766666543 35555443
No 322
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=89.77 E-value=1.5 Score=55.36 Aligned_cols=149 Identities=14% Similarity=0.261 Sum_probs=90.1
Q ss_pred CCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHH--HHHHHHHHHhcCCcEEEecchHHHHHHHHHHHh----ccc---cE
Q 039491 399 FELDNFQKEAIYYLENGDSVFVAAHTSAGKTVV--AEYAFALATKHCTRAVYTAPIKTISNQKYRDFS----GKF---DV 469 (1379)
Q Consensus 399 FeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlv--ae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~----~~f---~V 469 (1379)
|.+..+=..++.+..+.-+|++ -|=--|||+. ++++++++--.+-++.|++..|--++-.+.++. +.| .+
T Consensus 187 Fdi~~~s~~~l~~FKQkaTVFL-VPRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~v 265 (668)
T PHA03372 187 FDIEFLSESSLNIFKQKATVFL-VPRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHT 265 (668)
T ss_pred cCCcccCHHHHHHhhccceEEE-ecccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccce
Confidence 4555666677777766656655 4889999964 444444443568999999999999888777664 344 22
Q ss_pred EEEecCccc-----CCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHH-cCccceEEEec
Q 039491 470 GLLTGDVSL-----RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIM-LPRHINIVLLS 543 (1379)
Q Consensus 470 glltGdv~i-----n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~-Lp~~vqiIlLS 543 (1379)
+-.-|..+ +....++.+| .-..++.-=.+.+++++||||.+. ...+..++-. +.++.++|+.|
T Consensus 266 -i~~k~~tI~~s~pg~Kst~~fas------c~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfIS 334 (668)
T PHA03372 266 -IENKDNVISIDHRGAKSTALFAS------CYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFIS 334 (668)
T ss_pred -eeecCcEEEEecCCCcceeeehh------hccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEe
Confidence 11111111 1122233332 111122223578999999999997 4455556544 45789999999
Q ss_pred ccCCChHHHHHHHhhhc
Q 039491 544 ATVPNTVEFADWIGRTK 560 (1379)
Q Consensus 544 ATvpN~~efa~wl~~~~ 560 (1379)
-|-.. .+-..|+...+
T Consensus 335 S~Nsg-~~sTSfL~~Lk 350 (668)
T PHA03372 335 STNTT-NDATCFLTKLN 350 (668)
T ss_pred CCCCC-CccchHHHhcc
Confidence 88321 12236666543
No 323
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=89.72 E-value=2.3 Score=46.69 Aligned_cols=93 Identities=16% Similarity=0.192 Sum_probs=57.6
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRS 494 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL~s 494 (1379)
|.=.++++|..||||.-.+-.+..+.-.+.++++..|-. -..|.++.+..-..+..++.. |-.+..+..
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~i----------D~R~~~~~V~Sr~G~~~~A~~-i~~~~~i~~ 72 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAI----------DTRYGVGKVSSRIGLSSEAVV-IPSDTDIFD 72 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccc----------ccccccceeeeccCCccccee-cCChHHHHH
Confidence 334689999999999865555555566788888888841 223344555444444444444 444444444
Q ss_pred HHhcCcccCCCccEEEEeccCCCCC
Q 039491 495 MLYRGADIIRDIEWVIFDEVHYVND 519 (1379)
Q Consensus 495 mL~~~~~~l~~v~lVI~DEaH~l~d 519 (1379)
.+....... .+++|.+|||+.+..
T Consensus 73 ~i~~~~~~~-~~~~v~IDEaQF~~~ 96 (201)
T COG1435 73 EIAALHEKP-PVDCVLIDEAQFFDE 96 (201)
T ss_pred HHHhcccCC-CcCEEEEehhHhCCH
Confidence 443322222 289999999998864
No 324
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=89.69 E-value=0.48 Score=62.02 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=27.5
Q ss_pred CccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChH
Q 039491 505 DIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTV 550 (1379)
Q Consensus 505 ~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~ 550 (1379)
...++||||+|+++.. ..+.++..+. ..++++.+||-+|..
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~lE-~g~IiLI~aTTenp~ 149 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWVE-NGTITLIGATTENPY 149 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHhc-CceEEEEEecCCChH
Confidence 4568999999998742 2333443343 457888888876653
No 325
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=89.64 E-value=1.7 Score=51.22 Aligned_cols=40 Identities=8% Similarity=0.108 Sum_probs=23.6
Q ss_pred CCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEec
Q 039491 504 RDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLS 543 (1379)
Q Consensus 504 ~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLS 543 (1379)
...++|||||+|.+........+..++...+.++++|+.|
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 3568999999999854322222333344445566666543
No 326
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=89.57 E-value=0.19 Score=54.34 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=56.3
Q ss_pred EEEcCCCccHHHHHHHHHHHHHhcC-CcEEEecchHHHHHHHHHHHhccc-cEEEEec------Cc--ccCCCCceeeec
Q 039491 419 FVAAHTSAGKTVVAEYAFALATKHC-TRAVYTAPIKTISNQKYRDFSGKF-DVGLLTG------DV--SLRPEASCLIMT 488 (1379)
Q Consensus 419 lV~ApTGSGKTlvae~aI~~~l~~~-~raIylsPtkaLsnQk~~~~~~~f-~VglltG------dv--~in~~a~IlV~T 488 (1379)
++.|+=|-|||.+.-++++..+..+ .++++++|.++=++..++-+...+ ..+.-.. .. -......|-+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~ 80 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIGQIIKLRFNKQRIEFVA 80 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC--------------------------CCC--B--
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhccccccccccccccccccccccccceEEEEC
Confidence 5789999999998777766666554 589999999998887776665443 2222110 00 011245677777
Q ss_pred HHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCCh
Q 039491 489 TEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNT 549 (1379)
Q Consensus 489 pEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~ 549 (1379)
|..+... -...++||+|||=.+. +..+..++.. ...+.||.|+...
T Consensus 81 Pd~l~~~-------~~~~DlliVDEAAaIp-------~p~L~~ll~~-~~~vv~stTi~GY 126 (177)
T PF05127_consen 81 PDELLAE-------KPQADLLIVDEAAAIP-------LPLLKQLLRR-FPRVVFSTTIHGY 126 (177)
T ss_dssp HHHHCCT-----------SCEEECTGGGS--------HHHHHHHHCC-SSEEEEEEEBSST
T ss_pred CHHHHhC-------cCCCCEEEEechhcCC-------HHHHHHHHhh-CCEEEEEeecccc
Confidence 7766321 1245899999998764 2222233433 3456778887644
No 327
>PRK09087 hypothetical protein; Validated
Probab=89.57 E-value=1.4 Score=49.65 Aligned_cols=40 Identities=8% Similarity=-0.056 Sum_probs=23.8
Q ss_pred cEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCC
Q 039491 507 EWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPN 548 (1379)
Q Consensus 507 ~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN 548 (1379)
++|++|++|.+... ...+-.++..+...-+.++++|+.++
T Consensus 89 ~~l~iDDi~~~~~~--~~~lf~l~n~~~~~g~~ilits~~~p 128 (226)
T PRK09087 89 GPVLIEDIDAGGFD--ETGLFHLINSVRQAGTSLLMTSRLWP 128 (226)
T ss_pred CeEEEECCCCCCCC--HHHHHHHHHHHHhCCCeEEEECCCCh
Confidence 48999999988532 22344455555443345666666443
No 328
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=89.46 E-value=1.1 Score=54.38 Aligned_cols=89 Identities=16% Similarity=0.198 Sum_probs=54.2
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeee---cH
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIM---TT 489 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~---Tp 489 (1379)
..|.-+++.+++|+|||..+...+....+.+.+++|++-... ..|...+..+. |+.. .++.+. ..
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs-~~qi~~Ra~rl---g~~~--------~~l~l~~e~~l 147 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES-PEQIKLRADRL---GIST--------ENLYLLAETNL 147 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC-HHHHHHHHHHc---CCCc--------ccEEEEccCcH
Confidence 446789999999999999776665555566789999875432 34444333322 1110 011121 22
Q ss_pred HHHHHHHhcCcccCCCccEEEEeccCCCC
Q 039491 490 EILRSMLYRGADIIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 490 EiL~smL~~~~~~l~~v~lVI~DEaH~l~ 518 (1379)
+.+.+.+.. .+.++||||+++.+.
T Consensus 148 e~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 148 EDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred HHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 444444422 357899999999874
No 329
>PRK05973 replicative DNA helicase; Provisional
Probab=89.41 E-value=0.39 Score=54.51 Aligned_cols=55 Identities=22% Similarity=0.185 Sum_probs=39.7
Q ss_pred HHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhc
Q 039491 410 YYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSG 465 (1379)
Q Consensus 410 ~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~ 465 (1379)
--+..|..++|+|++|+|||..+.-.+....++|.+++|++---. ..|..+++..
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes-~~~i~~R~~s 113 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT-EQDVRDRLRA 113 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHHHHH
Confidence 345678899999999999999877666666678889999874322 3444555544
No 330
>PF05729 NACHT: NACHT domain
Probab=89.41 E-value=1.3 Score=46.10 Aligned_cols=42 Identities=10% Similarity=0.177 Sum_probs=26.8
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHhcC-----CcEEEecchHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATKHC-----TRAVYTAPIKTISNQ 458 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~~~-----~raIylsPtkaLsnQ 458 (1379)
-++|.|+.|+|||+++...+....... ..+++..+.+....+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDS 48 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhc
Confidence 478999999999997655554444332 135555555555544
No 331
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=89.36 E-value=1 Score=51.57 Aligned_cols=133 Identities=19% Similarity=0.165 Sum_probs=69.1
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHhc-CCcEEEecch---HHHHHHHHHHHhccccEEEEecCccc----------
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATKH-CTRAVYTAPI---KTISNQKYRDFSGKFDVGLLTGDVSL---------- 478 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~~-~~raIylsPt---kaLsnQk~~~~~~~f~VglltGdv~i---------- 478 (1379)
..|+-++++|.||.|||..+.-.+..+..+ +..++|++.- ..+...........-.-.+.+|....
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~~~~~ 96 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKIRSGDLSDEEFERLQAAA 96 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHHHHHH
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhhccccCHHHHHHHHHHH
Confidence 345678999999999998877766666655 6899999762 22222221111110000000011000
Q ss_pred --CCCCcee-----eecHHHHHHHHhcCcccCCCccEEEEeccCCCCCc----cchhHHHHHHHHcC-----ccceEEEe
Q 039491 479 --RPEASCL-----IMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDI----ERGVVWEEVIIMLP-----RHINIVLL 542 (1379)
Q Consensus 479 --n~~a~Il-----V~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~----~rG~v~eeii~~Lp-----~~vqiIlL 542 (1379)
-.+..+. =+|++.+.+.+.+-.....++++||+|=.|.|... .+...+..+...|. -++.+|++
T Consensus 97 ~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~~ 176 (259)
T PF03796_consen 97 EKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNIPVIAL 176 (259)
T ss_dssp HHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCCeEEEc
Confidence 0001111 14666666655442222268899999999998763 23333334433332 35667777
Q ss_pred ccc
Q 039491 543 SAT 545 (1379)
Q Consensus 543 SAT 545 (1379)
|-.
T Consensus 177 sQl 179 (259)
T PF03796_consen 177 SQL 179 (259)
T ss_dssp EEB
T ss_pred ccc
Confidence 664
No 332
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=89.04 E-value=0.23 Score=62.72 Aligned_cols=143 Identities=21% Similarity=0.258 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHHHC--------CC--cEEEEcC--CCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-
Q 039491 401 LDNFQKEAIYYLEN--------GD--SVFVAAH--TSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF- 467 (1379)
Q Consensus 401 L~~~Q~eAI~~L~~--------g~--sVlV~Ap--TGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f- 467 (1379)
|...|.+||-...+ |+ -.++--. .|-|.|++ .+..-..|+..+|+|+++=...|--..-++++...
T Consensus 265 lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvA-giIfeNyLkGRKrAlW~SVSsDLKfDAERDL~DigA 343 (1300)
T KOG1513|consen 265 LSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVA-GIIFENYLKGRKRALWFSVSSDLKFDAERDLRDIGA 343 (1300)
T ss_pred hhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeE-EEEehhhhcccceeEEEEeccccccchhhchhhcCC
Confidence 77889888865432 22 2344434 44455543 33445667888999999988888777777777654
Q ss_pred -----------cEEEEecCcccCCCCceeeecHHHHHHHHhc-Cc----------ccC-CC-ccEEEEeccCCCCC----
Q 039491 468 -----------DVGLLTGDVSLRPEASCLIMTTEILRSMLYR-GA----------DII-RD-IEWVIFDEVHYVND---- 519 (1379)
Q Consensus 468 -----------~VglltGdv~in~~a~IlV~TpEiL~smL~~-~~----------~~l-~~-v~lVI~DEaH~l~d---- 519 (1379)
+.+-+.++..-+-..-++++|+-.|.---.. +. .++ .+ =++|||||||...+
T Consensus 344 ~~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKNL~p~ 423 (1300)
T KOG1513|consen 344 TGIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKNLVPT 423 (1300)
T ss_pred CCccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhcccccc
Confidence 3344556666555667899998766322110 00 000 11 25899999998654
Q ss_pred -----ccchhHHHHHHHHcCccceEEEeccc
Q 039491 520 -----IERGVVWEEVIIMLPRHINIVLLSAT 545 (1379)
Q Consensus 520 -----~~rG~v~eeii~~Lp~~vqiIlLSAT 545 (1379)
...|...-++-..|| ..+++.-|||
T Consensus 424 ~~~k~TKtG~tVLdLQk~LP-~ARVVYASAT 453 (1300)
T KOG1513|consen 424 AGAKSTKTGKTVLDLQKKLP-NARVVYASAT 453 (1300)
T ss_pred cCCCcCcccHhHHHHHHhCC-CceEEEeecc
Confidence 224555556666676 5899999999
No 333
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=89.00 E-value=1.2 Score=53.22 Aligned_cols=124 Identities=15% Similarity=0.130 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHC-C---CcEEEEcCCCccHHHHHHHHHHHHH-hcCC---cEEEecchHHHHHHHHHHHhccc--cEEE
Q 039491 402 DNFQKEAIYYLEN-G---DSVFVAAHTSAGKTVVAEYAFALAT-KHCT---RAVYTAPIKTISNQKYRDFSGKF--DVGL 471 (1379)
Q Consensus 402 ~~~Q~eAI~~L~~-g---~sVlV~ApTGSGKTlvae~aI~~~l-~~~~---raIylsPtkaLsnQk~~~~~~~f--~Vgl 471 (1379)
.|||......+.. | ...++++|.|.|||..|.. ++.++ -... ..-=.+|. .+.+...- ++-.
T Consensus 5 yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~-~A~~llC~~~~~~~~Cg~C~s-------C~~~~~g~HPD~~~ 76 (328)
T PRK05707 5 YPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER-LAAALLCEAPQGGGACGSCKG-------CQLLRAGSHPDNFV 76 (328)
T ss_pred CCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH-HHHHHcCCCCCCCCCCCCCHH-------HHHHhcCCCCCEEE
Confidence 4677777777643 3 2578999999999987643 33333 1111 00001111 12222111 3433
Q ss_pred EecCcccCCCCceeeecHHHHHHHHhcC--cccCCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEec
Q 039491 472 LTGDVSLRPEASCLIMTTEILRSMLYRG--ADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLLS 543 (1379)
Q Consensus 472 ltGdv~in~~a~IlV~TpEiL~smL~~~--~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlLS 543 (1379)
+..+.. ...|- .+.+|.+...- .......+++||||||.|+. .....++..| |.++.+|+.|
T Consensus 77 i~~~~~---~~~i~---id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~----~aaNaLLK~LEEPp~~~~fiL~t 143 (328)
T PRK05707 77 LEPEEA---DKTIK---VDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNR----NAANALLKSLEEPSGDTVLLLIS 143 (328)
T ss_pred EeccCC---CCCCC---HHHHHHHHHHHhhccccCCCeEEEECChhhCCH----HHHHHHHHHHhCCCCCeEEEEEE
Confidence 322110 01122 24444433221 12345788999999999984 3445555554 3445555444
No 334
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=88.88 E-value=0.91 Score=63.23 Aligned_cols=114 Identities=16% Similarity=0.150 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcC---CcEEEecchHHHHHHHHHHHhccc-c-EEEEecC
Q 039491 401 LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHC---TRAVYTAPIKTISNQKYRDFSGKF-D-VGLLTGD 475 (1379)
Q Consensus 401 L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~---~raIylsPtkaLsnQk~~~~~~~f-~-VglltGd 475 (1379)
+++-|.+||. ..+.+++|.|.-|||||.+..--+...+..+ .++++++=|++.+.+...++.+.+ . +.--...
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~~p~~ 79 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQEPNS 79 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 5789999997 4688999999999999998765565555433 459999999999999888887765 1 1100000
Q ss_pred c----ccCCCCceeeecHHHHHHHHhcCcccCCCc--cEEEEeccCC
Q 039491 476 V----SLRPEASCLIMTTEILRSMLYRGADIIRDI--EWVIFDEVHY 516 (1379)
Q Consensus 476 v----~in~~a~IlV~TpEiL~smL~~~~~~l~~v--~lVI~DEaH~ 516 (1379)
. ++..-...-|+|...+...+-+.....-++ .+=|.||...
T Consensus 80 ~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 80 KHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred HHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 0 011113456888876654333322111122 4556777653
No 335
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.88 E-value=1.7 Score=54.35 Aligned_cols=107 Identities=17% Similarity=0.273 Sum_probs=55.3
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHHh--cCCcEEEecchHHHHHH--HHHHHhccc--cEEEEecCcccCCCCceeeecH
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALATK--HCTRAVYTAPIKTISNQ--KYRDFSGKF--DVGLLTGDVSLRPEASCLIMTT 489 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l~--~~~raIylsPtkaLsnQ--k~~~~~~~f--~VglltGdv~in~~a~IlV~Tp 489 (1379)
+..++++|.|.|||.+|.+ ++.++. .+. +-.-+++ ..+.+.... +|-.+.+... . ..
T Consensus 36 ha~Lf~Gp~G~GKTT~Ari-lAk~LnC~~~~-------~~~pCg~C~~C~~i~~~~~~Dv~eidaas~------~---~v 98 (491)
T PRK14964 36 QSILLVGASGVGKTTCARI-ISLCLNCSNGP-------TSDPCGTCHNCISIKNSNHPDVIEIDAASN------T---SV 98 (491)
T ss_pred ceEEEECCCCccHHHHHHH-HHHHHcCcCCC-------CCCCccccHHHHHHhccCCCCEEEEecccC------C---CH
Confidence 4689999999999987643 344331 111 1001111 122333222 4444433211 1 12
Q ss_pred HHHHHHHhc--CcccCCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEec
Q 039491 490 EILRSMLYR--GADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLLS 543 (1379)
Q Consensus 490 EiL~smL~~--~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlLS 543 (1379)
+.++..+.. ......+.+++||||+|++... ..+.++..+ |+++.+|+.+
T Consensus 99 ddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~----A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 99 DDIKVILENSCYLPISSKFKVYIIDEVHMLSNS----AFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred HHHHHHHHHHHhccccCCceEEEEeChHhCCHH----HHHHHHHHHhCCCCCeEEEEEe
Confidence 333333321 1124568899999999999743 344444443 5667777654
No 336
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=88.85 E-value=1.6 Score=47.52 Aligned_cols=132 Identities=24% Similarity=0.264 Sum_probs=72.3
Q ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc--cEEE------EecCcccCCCCceeeecH
Q 039491 418 VFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF--DVGL------LTGDVSLRPEASCLIMTT 489 (1379)
Q Consensus 418 VlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f--~Vgl------ltGdv~in~~a~IlV~Tp 489 (1379)
++|--..|=|||.+|+=-+++++.+|.|+.|+.=+|-=...--+.....| .|.. ++.+.+ ++++++ ...
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~~g~tw~~~-~~~~d~--~aa 107 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMGEGFTWETQ-DREADI--AAA 107 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhhccceeEEecCCceeCCCc-CcHHHH--HHH
Confidence 45555666788999888888999999999998766544222122222222 2211 122222 122333 112
Q ss_pred HH----HHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEecccCCCh-HHHHHHHhh
Q 039491 490 EI----LRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLLSATVPNT-VEFADWIGR 558 (1379)
Q Consensus 490 Ei----L~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlLSATvpN~-~efa~wl~~ 558 (1379)
.. ...++.. .++++||+||+-+....+ -..+++++..| |.+..+|+--=..|.. .+.|+.+..
T Consensus 108 ~~~w~~a~~~l~~-----~~ydlviLDEl~~al~~g-~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlVTE 178 (198)
T COG2109 108 KAGWEHAKEALAD-----GKYDLVILDELNYALRYG-LLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLVTE 178 (198)
T ss_pred HHHHHHHHHHHhC-----CCCCEEEEehhhHHHHcC-CCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHHhh
Confidence 11 1222221 268999999999877543 23367776655 4555555443234433 477777653
No 337
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=88.81 E-value=0.43 Score=54.04 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=37.7
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHh
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFS 464 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~ 464 (1379)
.|..++|.|++|+|||+.+.-.+...++++.+++|++- -+-..|..+.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~-ee~~~~i~~~~~ 69 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL-EEHPVQVRRNMA 69 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe-eCCHHHHHHHHH
Confidence 46789999999999999887777777788999999983 333444444444
No 338
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=88.77 E-value=0.95 Score=55.24 Aligned_cols=121 Identities=12% Similarity=0.167 Sum_probs=74.2
Q ss_pred cEEEEcCCCccHHHHHHHHHHH-HHh--cCCcEEEecchHH-HHHHHHHHHhccc-cEEE---Ee-cCc--c--cCC-CC
Q 039491 417 SVFVAAHTSAGKTVVAEYAFAL-ATK--HCTRAVYTAPIKT-ISNQKYRDFSGKF-DVGL---LT-GDV--S--LRP-EA 482 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~-~l~--~~~raIylsPtka-LsnQk~~~~~~~f-~Vgl---lt-Gdv--~--in~-~a 482 (1379)
-.++.+..|||||.++...+.. ++. .+.+++++-|+.. |..-.+..+...+ ..|+ .. .+. . +.. ..
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~i~~~~~g~ 82 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSMEIKILNTGK 82 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccEEEecCCCe
Confidence 4678999999999876655443 444 6789999999877 6777778777654 2221 11 011 0 111 22
Q ss_pred ceeeec----HHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCc--cceEEEecccCCCh
Q 039491 483 SCLIMT----TEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPR--HINIVLLSATVPNT 549 (1379)
Q Consensus 483 ~IlV~T----pEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~--~vqiIlLSATvpN~ 549 (1379)
.|++.. ++.+. ....+.++.+|||..+. ...|++++..|.. ....+.+|.|+++.
T Consensus 83 ~i~f~g~~d~~~~ik--------~~~~~~~~~idEa~~~~----~~~~~~l~~rlr~~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 83 KFIFKGLNDKPNKLK--------SGAGIAIIWFEEASQLT----FEDIKELIPRLRETGGKKFIIFSSNPESP 143 (396)
T ss_pred EEEeecccCChhHhh--------CcceeeeehhhhhhhcC----HHHHHHHHHHhhccCCccEEEEEcCcCCC
Confidence 233322 11221 12236899999999885 3478888877752 22248888887653
No 339
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=88.70 E-value=3.5 Score=48.95 Aligned_cols=133 Identities=14% Similarity=0.084 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHHH----CCC---cEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc--cEEE
Q 039491 401 LDNFQKEAIYYLE----NGD---SVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF--DVGL 471 (1379)
Q Consensus 401 L~~~Q~eAI~~L~----~g~---sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f--~Vgl 471 (1379)
++|||..++..+. +|+ ..++.+|.|.||+..|...+...+-.+...-=.++. .+.+.... ++-.
T Consensus 5 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~-------c~~~~~g~HPD~~~ 77 (319)
T PRK08769 5 FSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRT-------RQLIAAGTHPDLQL 77 (319)
T ss_pred ccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchH-------HHHHhcCCCCCEEE
Confidence 5678888887753 444 589999999999987654333332211100000111 11222222 5555
Q ss_pred Eec---CcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEeccc
Q 039491 472 LTG---DVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLLSAT 545 (1379)
Q Consensus 472 ltG---dv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlLSAT 545 (1379)
+.. +........|.|-..-.+...++.. ......+++|||+||.|+.. .-..+++.| |+++.+|++|.-
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~-p~~g~~kV~iI~~ae~m~~~----AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALT-PQYGIAQVVIVDPADAINRA----ACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhC-cccCCcEEEEeccHhhhCHH----HHHHHHHHhhCCCCCCeEEEEECC
Confidence 521 1011111223332222222323222 23356899999999999742 334444444 456666666643
No 340
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=88.68 E-value=0.73 Score=46.19 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=13.8
Q ss_pred EEEEcCCCccHHHHHH
Q 039491 418 VFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 418 VlV~ApTGSGKTlvae 433 (1379)
+++.+|.|+|||..+.
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 6899999999998754
No 341
>PRK13342 recombination factor protein RarA; Reviewed
Probab=88.59 E-value=1.3 Score=54.46 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=25.1
Q ss_pred CccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCCh
Q 039491 505 DIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNT 549 (1379)
Q Consensus 505 ~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~ 549 (1379)
.-.+|++||+|+++.. ..+.++..+.. ..++++.||-.|.
T Consensus 92 ~~~vL~IDEi~~l~~~----~q~~LL~~le~-~~iilI~att~n~ 131 (413)
T PRK13342 92 RRTILFIDEIHRFNKA----QQDALLPHVED-GTITLIGATTENP 131 (413)
T ss_pred CceEEEEechhhhCHH----HHHHHHHHhhc-CcEEEEEeCCCCh
Confidence 4578999999998732 23444444443 4566676765553
No 342
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.57 E-value=3 Score=51.14 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=23.6
Q ss_pred cCCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEe
Q 039491 502 IIRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLL 542 (1379)
Q Consensus 502 ~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlL 542 (1379)
...+..+||+||+|++.. ..++.++..+ |+...+|+.
T Consensus 124 ~~~~~kvvIIdea~~l~~----~~~~~LLk~LEep~~~t~~Il~ 163 (397)
T PRK14955 124 QKGRYRVYIIDEVHMLSI----AAFNAFLKTLEEPPPHAIFIFA 163 (397)
T ss_pred hcCCeEEEEEeChhhCCH----HHHHHHHHHHhcCCCCeEEEEE
Confidence 456789999999999974 2344454444 334444443
No 343
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=88.56 E-value=0.61 Score=58.77 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=37.4
Q ss_pred CCCCCCHHHHHHHHH----HHCCCcEEEEcCCCccHHHHHHHHHHHHHh
Q 039491 397 FPFELDNFQKEAIYY----LENGDSVFVAAHTSAGKTVVAEYAFALATK 441 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~----L~~g~sVlV~ApTGSGKTlvae~aI~~~l~ 441 (1379)
|||+|+.+|.+-+.. |+.|+-.+.-.|||+|||+...-+.+.+++
T Consensus 12 fPy~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 12 FPYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CCCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 788999999987755 588998899999999999976666666663
No 344
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=88.56 E-value=0.53 Score=52.54 Aligned_cols=75 Identities=15% Similarity=0.160 Sum_probs=39.9
Q ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHHHHHHh
Q 039491 418 VFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLY 497 (1379)
Q Consensus 418 VlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL~smL~ 497 (1379)
++|.|+.|||||. .|...+.....+....|+..+...+. ....+.-+.|.+.+.....
T Consensus 1 ~vv~G~pGsGKSt----~i~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~v~s~~~~~~ 58 (234)
T PF01443_consen 1 IVVHGVPGSGKST----LIKKLLKDRLVVTVISPTIELYTEWL------------------PDPPSKSVRTVDSFLKALV 58 (234)
T ss_pred CEEEcCCCCCHHH----HHHHHHHhccccccccccceeccccc------------------cccCCccccEEeEhhhccc
Confidence 4789999999997 44444444422233345444544432 1111222233322222111
Q ss_pred cCcccCCCccEEEEeccCCCC
Q 039491 498 RGADIIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 498 ~~~~~l~~v~lVI~DEaH~l~ 518 (1379)
. ....+++||||+..+.
T Consensus 59 ~----~~~~~~liiDE~~~~~ 75 (234)
T PF01443_consen 59 K----PKSYDTLIIDEAQLLP 75 (234)
T ss_pred c----cCcCCEEEEeccccCC
Confidence 1 1458899999999875
No 345
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=88.52 E-value=2 Score=54.92 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=17.9
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALAT 440 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l 440 (1379)
+..+++||.|+|||.+|. +++..+
T Consensus 39 hA~Lf~GP~GvGKTTlA~-~lAk~L 62 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAK-IFAKAI 62 (605)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHh
Confidence 468999999999998764 344443
No 346
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=88.50 E-value=4.2 Score=52.09 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=30.4
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~a 435 (1379)
...+|.++...+++.+.|...+..- .-++..+++||.|+|||.+|-..
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~~-------------------~~~hayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQG-------------------KISHAYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHcC-------------------CCCeEEEEECCCCCCHHHHHHHH
Confidence 3456777777777666665522110 01235788999999999876544
No 347
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=88.47 E-value=3.5 Score=53.25 Aligned_cols=123 Identities=14% Similarity=0.060 Sum_probs=77.4
Q ss_pred HHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEE
Q 039491 674 LTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAI 753 (1379)
Q Consensus 674 ~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIav 753 (1379)
..+...+. ...+.++|-+.|.+..+.++..|... +.. -+ +
T Consensus 460 ~~~~~~~~-~~~G~~lvLfTS~~~~~~~~~~l~~~-l~~-------------------------------------~~-l 499 (636)
T TIGR03117 460 LSTAAILR-KAQGGTLVLTTAFSHISAIGQLVELG-IPA-------------------------------------EI-V 499 (636)
T ss_pred HHHHHHHH-HcCCCEEEEechHHHHHHHHHHHHhh-cCC-------------------------------------CE-E
Confidence 34444444 44578999999999999999888541 110 01 2
Q ss_pred ecCCCChHHHHHHHHHhcC----CCeeEEEecccccccCCC--------CC--c-eEEEccccccCCc------------
Q 039491 754 HHAGLLPIVKEVIEMLFCR----GVVKVLFSTETFAMGVNA--------PA--R-TVVFDNLRKFDGR------------ 806 (1379)
Q Consensus 754 hHggL~~~~Re~Ve~lF~~----G~ikVLVATetla~GINi--------Pa--~-tvVI~~~~kfDg~------------ 806 (1379)
..|..+ .|...++.|++ |.-.|||+|..|-+|||+ |+ . .|||.... |...
T Consensus 500 ~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLP-F~~~dp~a~~~~~~~~ 576 (636)
T TIGR03117 500 IQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAP-FGLNRSLSMLKRIRKT 576 (636)
T ss_pred EeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCC-CCcCChHHHHHHHHhc
Confidence 344332 23446667776 478999999999999999 32 3 45565443 4321
Q ss_pred ---ccc--cCCHHHHHHHhcccCCCCCC-CcEEEEEEec
Q 039491 807 ---EFR--QLLPGEYTQMAGRAGRRGLD-KIGTVVVLCR 839 (1379)
Q Consensus 807 ---~~r--pls~~eyiQmaGRAGRrG~d-~~G~vIil~~ 839 (1379)
.|. |.....+.|-+||.=|...| ..|+++++-.
T Consensus 577 g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~ 615 (636)
T TIGR03117 577 SVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDG 615 (636)
T ss_pred CCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeC
Confidence 111 11234677999999999876 3686666543
No 348
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=88.38 E-value=0.88 Score=50.74 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=54.2
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcC------CcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceee-
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHC------TRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLI- 486 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~------~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV- 486 (1379)
.|+-+.+.+++|+|||..+...+...+..+ .+++|+..-..+..+....+.+.+ +.-.. .. ..++.|
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~--~~~~~--~~--~~~i~~~ 91 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRF--GLDPE--EV--LDNIYVA 91 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHh--ccchh--hh--hccEEEE
Confidence 367889999999999998777666666665 788998765332222222221111 11000 00 012222
Q ss_pred --ecHHHHHHHHhcCcc--cCCCccEEEEeccCCC
Q 039491 487 --MTTEILRSMLYRGAD--IIRDIEWVIFDEVHYV 517 (1379)
Q Consensus 487 --~TpEiL~smL~~~~~--~l~~v~lVI~DEaH~l 517 (1379)
.+++.+...+..-.. .-..+++||+|-+-.+
T Consensus 92 ~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l 126 (226)
T cd01393 92 RPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAAL 126 (226)
T ss_pred eCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchh
Confidence 345555444433111 1247889999998654
No 349
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=88.31 E-value=0.69 Score=54.90 Aligned_cols=54 Identities=22% Similarity=0.250 Sum_probs=39.6
Q ss_pred CCHHHHHHHHH-HHCCCcEEEEcCCCccHHHHHHHHHHHHH---hcCCcEEEecchHHH
Q 039491 401 LDNFQKEAIYY-LENGDSVFVAAHTSAGKTVVAEYAFALAT---KHCTRAVYTAPIKTI 455 (1379)
Q Consensus 401 L~~~Q~eAI~~-L~~g~sVlV~ApTGSGKTlvae~aI~~~l---~~~~raIylsPtkaL 455 (1379)
+++.|.+.+.. +..+.+++++++||||||..+ .+++..+ ....+++++-.+.+|
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhcCCCceEEEEcCCCcc
Confidence 56778888875 467789999999999999653 4454442 345678877777666
No 350
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=88.23 E-value=0.44 Score=52.58 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=25.1
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKT 454 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtka 454 (1379)
+..++|.||-|+|||...-..+......+..++|+.+...
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~ 59 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEE 59 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTB
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccc
Confidence 4789999999999998543333333233446777766433
No 351
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=88.20 E-value=0.64 Score=54.63 Aligned_cols=102 Identities=23% Similarity=0.301 Sum_probs=61.5
Q ss_pred HHCCC--cEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecH
Q 039491 412 LENGD--SVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTT 489 (1379)
Q Consensus 412 L~~g~--sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~Tp 489 (1379)
+++++ +.++.+|.|.|||..|-+.+.....+..+.|=++-|++=.+..-.-|.+-
T Consensus 157 ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~a----------------------- 213 (554)
T KOG2028|consen 157 IEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQA----------------------- 213 (554)
T ss_pred HHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHH-----------------------
Confidence 45554 89999999999999876555555455556666666665544433322210
Q ss_pred HHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcC--ccceEEEecccCCChH
Q 039491 490 EILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLP--RHINIVLLSATVPNTV 550 (1379)
Q Consensus 490 EiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp--~~vqiIlLSATvpN~~ 550 (1379)
... ....++=.++.+||+|+.+..... ..|| ..--|++.-||-.|+.
T Consensus 214 q~~-------~~l~krkTilFiDEiHRFNksQQD-------~fLP~VE~G~I~lIGATTENPS 262 (554)
T KOG2028|consen 214 QNE-------KSLTKRKTILFIDEIHRFNKSQQD-------TFLPHVENGDITLIGATTENPS 262 (554)
T ss_pred HHH-------HhhhcceeEEEeHHhhhhhhhhhh-------cccceeccCceEEEecccCCCc
Confidence 001 112334457889999998743211 1233 2346888889977764
No 352
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=88.20 E-value=0.64 Score=55.67 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=35.6
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHH
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTIS 456 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLs 456 (1379)
+..+.+++|+++||||||... .+++..+....+++.+-.+.+|.
T Consensus 159 v~~~~nilI~G~tGSGKTTll-~aLl~~i~~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMS-KTLISAIPPQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHHH-HHHHcccCCCCCEEEECCCcccc
Confidence 456889999999999999853 66777777778888888887774
No 353
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=88.18 E-value=3.6 Score=48.20 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=15.9
Q ss_pred cEEEEcCCCccHHHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~a 435 (1379)
++++.||+|+|||.++...
T Consensus 40 ~~ll~G~~G~GKt~~~~~l 58 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALAL 58 (319)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5899999999999876443
No 354
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.10 E-value=3.5 Score=52.94 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=17.0
Q ss_pred CcEEEEcCCCccHHHHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYAF 436 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI 436 (1379)
..+|..+|.|.|||.+|.+..
T Consensus 39 ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 368899999999999876443
No 355
>PHA00350 putative assembly protein
Probab=88.06 E-value=2.3 Score=51.87 Aligned_cols=31 Identities=19% Similarity=0.045 Sum_probs=24.0
Q ss_pred EEEEcCCCccHHHHHHH-HHHHHHhcCCcEEEe
Q 039491 418 VFVAAHTSAGKTVVAEY-AFALATKHCTRAVYT 449 (1379)
Q Consensus 418 VlV~ApTGSGKTlvae~-aI~~~l~~~~raIyl 449 (1379)
.++.+..|||||.-+.. .|..+++.|. .+|+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR-~V~T 35 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGR-KVIT 35 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCC-EEEE
Confidence 47899999999998775 5777888885 4443
No 356
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=88.05 E-value=1.1 Score=52.45 Aligned_cols=18 Identities=22% Similarity=0.556 Sum_probs=15.5
Q ss_pred CcEEEEcCCCccHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae 433 (1379)
.+++++++|+-|||.+..
T Consensus 62 p~lLivG~snnGKT~Ii~ 79 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIE 79 (302)
T ss_pred CceEEecCCCCcHHHHHH
Confidence 489999999999998643
No 357
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.05 E-value=0.58 Score=58.95 Aligned_cols=56 Identities=20% Similarity=0.446 Sum_probs=41.9
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlva 432 (1379)
.+.+|.+.+..+.+...+.+.+ .||-+ +..|.+-. +..-+-|+..+|.|+|||++|
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V-----~~p~~~pe~F~r~G---i~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAV-----EWPLKHPEKFARFG---ISPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHH-----hhhhhchHHHHHhc---CCCCceEEEECCCCcchHHHH
Confidence 5678999999888877777643 45655 55666554 244578999999999999875
No 358
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=88.02 E-value=0.95 Score=49.28 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHH-HCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHH
Q 039491 401 LDNFQKEAIYYL-ENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKT 454 (1379)
Q Consensus 401 L~~~Q~eAI~~L-~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtka 454 (1379)
+++-|.+.+... ..|.++++++|||||||... .++...+....+++.+--..+
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll-~aL~~~i~~~~~~i~ied~~E 63 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL-NALLAFIPPDERIITIEDTAE 63 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhcCCCCCEEEECCccc
Confidence 677788888764 67889999999999999864 445555555566666544333
No 359
>PRK04841 transcriptional regulator MalT; Provisional
Probab=87.98 E-value=3 Score=56.28 Aligned_cols=42 Identities=19% Similarity=0.389 Sum_probs=33.1
Q ss_pred cEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCC
Q 039491 507 EWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPN 548 (1379)
Q Consensus 507 ~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN 548 (1379)
-+||||++|.+.+......+..++..+|++..+|+.|-+.|.
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 479999999997665455677778888999999998877543
No 360
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.90 E-value=4.5 Score=53.10 Aligned_cols=124 Identities=17% Similarity=0.166 Sum_probs=69.4
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHH-HhcC-CcE-EEecch-HHHHHHHHHHHhccccEEEEecCcccCCCCceeeecH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALA-TKHC-TRA-VYTAPI-KTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTT 489 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~-l~~~-~ra-IylsPt-kaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~Tp 489 (1379)
.++-+.+++|||+|||+......... ..++ .++ ++..-+ +.=+..+.+.+.+...+-+ .++.++
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv------------~~~~~~ 251 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV------------HAVKDA 251 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc------------cccCCH
Confidence 46678899999999987643333333 3444 344 333322 3223334444444332211 124578
Q ss_pred HHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHH---cCccceEEEecccCCChHHHHHHH
Q 039491 490 EILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIM---LPRHINIVLLSATVPNTVEFADWI 556 (1379)
Q Consensus 490 EiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~---Lp~~vqiIlLSATvpN~~efa~wl 556 (1379)
+.+...+.. +.+.++|+||=+=+.... ....+++... ..+.-.++.||||.. ..++.+.+
T Consensus 252 ~~l~~al~~----~~~~D~VLIDTAGRs~~d--~~l~eel~~l~~~~~p~e~~LVLsAt~~-~~~l~~i~ 314 (767)
T PRK14723 252 ADLRFALAA----LGDKHLVLIDTVGMSQRD--RNVSEQIAMLCGVGRPVRRLLLLNAASH-GDTLNEVV 314 (767)
T ss_pred HHHHHHHHH----hcCCCEEEEeCCCCCccC--HHHHHHHHHHhccCCCCeEEEEECCCCc-HHHHHHHH
Confidence 777776653 456789999999876532 2244444332 235567899999953 33343333
No 361
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=87.77 E-value=1.2 Score=52.45 Aligned_cols=94 Identities=20% Similarity=0.228 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHH-HCCCcEEEEcCCCccHHHHHHHHHHHHHhc---CCcEEEecchHHHHHHHHHHHhccccEEEEecCc
Q 039491 401 LDNFQKEAIYYL-ENGDSVFVAAHTSAGKTVVAEYAFALATKH---CTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDV 476 (1379)
Q Consensus 401 L~~~Q~eAI~~L-~~g~sVlV~ApTGSGKTlvae~aI~~~l~~---~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv 476 (1379)
+++-|.+.+..+ ..+.+++|+++||||||... .+++..+.. ..+++++-...+|.-. ..-.+.+.++.
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~ri~tiEd~~El~~~------~~~~v~~~~~~- 188 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTDRVVIIEDTRELQCA------APNVVQLRTSD- 188 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCceEEEECCchhhcCC------CCCEEEEEecC-
Confidence 455566666554 56779999999999999864 556555533 5788888888787421 00123333322
Q ss_pred ccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccC
Q 039491 477 SLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVH 515 (1379)
Q Consensus 477 ~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH 515 (1379)
+ ..|...+.....| .+.++||+.|+=
T Consensus 189 ----~----~~~~~~~l~~aLR-----~~pD~iivGEiR 214 (299)
T TIGR02782 189 ----D----AISMTRLLKATLR-----LRPDRIIVGEVR 214 (299)
T ss_pred ----C----CCCHHHHHHHHhc-----CCCCEEEEeccC
Confidence 1 1255544433322 356799999986
No 362
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=87.74 E-value=1.6 Score=53.27 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=20.4
Q ss_pred HHHHCCCcEEEEcCCCccHHHHHH
Q 039491 410 YYLENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 410 ~~L~~g~sVlV~ApTGSGKTlvae 433 (1379)
+.++++.|++..+|+|+|||-+|.
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHH
Confidence 456889999999999999996654
No 363
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=87.72 E-value=1.5 Score=52.09 Aligned_cols=48 Identities=17% Similarity=0.135 Sum_probs=30.5
Q ss_pred ccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHH
Q 039491 371 EAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 371 ~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae 433 (1379)
..|+++...+.....+...+...... -....++++.+|+|+|||..+.
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~---------------~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKR---------------GEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhc---------------CCCCCcEEEECCCCccHHHHHH
Confidence 46777777777766665543221100 0113579999999999998764
No 364
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=87.60 E-value=0.42 Score=57.90 Aligned_cols=28 Identities=32% Similarity=0.423 Sum_probs=21.8
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHH
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALAT 440 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l 440 (1379)
+-.|+.+++.||+|+|||..+.. |+..+
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~-i~~~I 192 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQK-IAQAI 192 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHH-HHHhh
Confidence 46799999999999999986544 44444
No 365
>PRK08506 replicative DNA helicase; Provisional
Probab=87.60 E-value=1.3 Score=55.55 Aligned_cols=133 Identities=19% Similarity=0.194 Sum_probs=71.0
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cE---EEEecCccc---------
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DV---GLLTGDVSL--------- 478 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~V---glltGdv~i--------- 478 (1379)
+..|.-++|+|.||.|||..+.-.+..+.+++.+++|.+.- .=..|...++.... .| .+..|+.+.
T Consensus 189 ~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a 267 (472)
T PRK08506 189 FNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLE-MPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERLSDA 267 (472)
T ss_pred CCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCc-CCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 45677899999999999988776666666778888888643 11233333332211 11 011222110
Q ss_pred ---CCCCceee-----ecHHHHHHHHhcCcccCCCccEEEEeccCCCCCcc----chhHHHHHHHHc---C--ccceEEE
Q 039491 479 ---RPEASCLI-----MTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIE----RGVVWEEVIIML---P--RHINIVL 541 (1379)
Q Consensus 479 ---n~~a~IlV-----~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~----rG~v~eeii~~L---p--~~vqiIl 541 (1379)
-.+.++.| +|+..+++.+.+-.....++++||||=.+.|.... +...+.++...| . -++.+|+
T Consensus 268 ~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~lAkel~ipVi~ 347 (472)
T PRK08506 268 CDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLLARELDIPIIA 347 (472)
T ss_pred HHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 01123333 35555554443311112358999999999886322 222233333222 2 2566777
Q ss_pred eccc
Q 039491 542 LSAT 545 (1379)
Q Consensus 542 LSAT 545 (1379)
+|-.
T Consensus 348 lsQL 351 (472)
T PRK08506 348 LSQL 351 (472)
T ss_pred Eeec
Confidence 7644
No 366
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=87.40 E-value=1.3 Score=49.83 Aligned_cols=44 Identities=20% Similarity=0.217 Sum_probs=27.3
Q ss_pred ccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHC-C---CcEEEEcCCCccHHHHHH
Q 039491 371 EAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLEN-G---DSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 371 ~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~-g---~sVlV~ApTGSGKTlvae 433 (1379)
+.|.++...+++...+.-+ +.++.. + .+++..+|.|.|||..|.
T Consensus 21 ~~L~efiGQ~~l~~~l~i~-------------------i~aa~~r~~~l~h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKIL-------------------IRAAKKRGEALDHMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHH-------------------HHHHHCTTS---EEEEESSTTSSHHHHHH
T ss_pred CCHHHccCcHHHHhhhHHH-------------------HHHHHhcCCCcceEEEECCCccchhHHHH
Confidence 4677777777777665432 222221 2 479999999999998653
No 367
>PRK10867 signal recognition particle protein; Provisional
Probab=87.38 E-value=4.7 Score=49.88 Aligned_cols=119 Identities=13% Similarity=0.143 Sum_probs=62.5
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHHhc-CCcEEEec--chHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecH-HH
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALATKH-CTRAVYTA--PIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTT-EI 491 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l~~-~~raIyls--PtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~Tp-Ei 491 (1379)
.-+++++++|+|||.++.-.+...... +.+++++. +.++-+..+.+.+.+..++.++..... ..| ++
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~---------~dp~~i 171 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDG---------QDPVDI 171 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCC---------CCHHHH
Confidence 357889999999998654443333344 66665543 345555555555555444444432211 122 22
Q ss_pred HHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHH---HHHHcCccceEEEecccCC
Q 039491 492 LRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEE---VIIMLPRHINIVLLSATVP 547 (1379)
Q Consensus 492 L~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~ee---ii~~Lp~~vqiIlLSATvp 547 (1379)
....+... ...+.++||+|=+=++... ....++ +...+.++--++.++||..
T Consensus 172 ~~~a~~~a--~~~~~DvVIIDTaGrl~~d--~~lm~eL~~i~~~v~p~evllVlda~~g 226 (433)
T PRK10867 172 AKAALEEA--KENGYDVVIVDTAGRLHID--EELMDELKAIKAAVNPDEILLVVDAMTG 226 (433)
T ss_pred HHHHHHHH--HhcCCCEEEEeCCCCcccC--HHHHHHHHHHHHhhCCCeEEEEEecccH
Confidence 22222111 1246789999998766422 122233 2233333334777888754
No 368
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=87.25 E-value=8.6 Score=47.50 Aligned_cols=120 Identities=8% Similarity=0.115 Sum_probs=63.8
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec--chHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecH-HHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA--PIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTT-EIL 492 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls--PtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~Tp-EiL 492 (1379)
..+++++++|+|||..+.-......+++.++++++ |.++-+.++.+.+.+..++.++..... . .| .+.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~----~-----dp~~i~ 171 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTE----S-----DPVKIA 171 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCC----C-----CHHHHH
Confidence 35779999999998764433333335566666554 345555555565555433222211100 0 11 122
Q ss_pred HHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHH---HHcCccceEEEecccCCC
Q 039491 493 RSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVI---IMLPRHINIVLLSATVPN 548 (1379)
Q Consensus 493 ~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii---~~Lp~~vqiIlLSATvpN 548 (1379)
..-+.... -...++||+|=+-+.... ....+++. ....++..++.++||...
T Consensus 172 ~~~l~~~~--~~~~DvViIDTaGr~~~d--~~lm~El~~i~~~~~p~e~lLVlda~~Gq 226 (429)
T TIGR01425 172 SEGVEKFK--KENFDIIIVDTSGRHKQE--DSLFEEMLQVAEAIQPDNIIFVMDGSIGQ 226 (429)
T ss_pred HHHHHHHH--hCCCCEEEEECCCCCcch--HHHHHHHHHHhhhcCCcEEEEEeccccCh
Confidence 22221110 145789999999765432 22333333 334556678889999763
No 369
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=87.20 E-value=1.1 Score=55.31 Aligned_cols=41 Identities=20% Similarity=0.224 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHH
Q 039491 399 FELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALAT 440 (1379)
Q Consensus 399 FeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l 440 (1379)
|-+.......+..+..++++++.+|+|+|||.+|. .++..+
T Consensus 178 ~i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~-~la~~l 218 (459)
T PRK11331 178 FIPETTIETILKRLTIKKNIILQGPPGVGKTFVAR-RLAYLL 218 (459)
T ss_pred cCCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH-HHHHHh
Confidence 44556667777888889999999999999998764 344433
No 370
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=87.17 E-value=4.1 Score=48.91 Aligned_cols=39 Identities=18% Similarity=0.159 Sum_probs=26.5
Q ss_pred CCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEeccc
Q 039491 503 IRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLLSAT 545 (1379)
Q Consensus 503 l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlLSAT 545 (1379)
-...+++|||+||+|+ ......++..| |+++-+|++|.-
T Consensus 130 ~~~~kV~iI~~ae~m~----~~AaNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 130 RGGARVVVLYPAEALN----VAAANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred cCCceEEEEechhhcC----HHHHHHHHHHhcCCCcCcEEEEEECC
Confidence 4578899999999998 34455666655 345555555544
No 371
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=87.12 E-value=4 Score=52.53 Aligned_cols=38 Identities=18% Similarity=0.429 Sum_probs=26.2
Q ss_pred cCCCccEEEEeccCCCCCccchhHHHHHHHH---cCccceEEEec
Q 039491 502 IIRDIEWVIFDEVHYVNDIERGVVWEEVIIM---LPRHINIVLLS 543 (1379)
Q Consensus 502 ~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~---Lp~~vqiIlLS 543 (1379)
...+.++|||||+|.++.. ..+.++.. -|+++.+|+.+
T Consensus 129 ~~a~~KVvIIDEad~Ls~~----a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 129 VSARYKVYIIDEVHMLSTA----AFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred hcCCcEEEEEEChHhCCHH----HHHHHHHHHHhCCCCeEEEEEe
Confidence 4567899999999999743 33444444 45677777754
No 372
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.98 E-value=3.1 Score=54.24 Aligned_cols=42 Identities=17% Similarity=0.363 Sum_probs=36.9
Q ss_pred cEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCC
Q 039491 507 EWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPN 548 (1379)
Q Consensus 507 ~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN 548 (1379)
=++|+|..|++.+..--..++.++.+.|+++.+|+.|=+-|.
T Consensus 131 l~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 131 LYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred eEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 489999999999987777888899999999999999987553
No 373
>PRK13695 putative NTPase; Provisional
Probab=86.88 E-value=4.1 Score=43.71 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=20.5
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHhcCCcE
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATKHCTRA 446 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~~~~ra 446 (1379)
.+++.++.|+|||..+...+......+.++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~ 31 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKV 31 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 478999999999998765443333335443
No 374
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.80 E-value=3.4 Score=53.46 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=16.3
Q ss_pred CcEEEEcCCCccHHHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~a 435 (1379)
..+++.||.|+|||.+|...
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~l 58 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARIL 58 (620)
T ss_pred ceEEEECCCCCChHHHHHHH
Confidence 46799999999999876443
No 375
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=86.55 E-value=4.1 Score=53.94 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=19.5
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALA 439 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~ 439 (1379)
..|+++.+|+|+|||.++.......
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999876544443
No 376
>PRK05748 replicative DNA helicase; Provisional
Probab=86.49 E-value=2.4 Score=52.80 Aligned_cols=133 Identities=19% Similarity=0.142 Sum_probs=68.9
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHH-hcCCcEEEecchHHHHHHHHHHHhccc-c--EE-EEecCccc--------
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALAT-KHCTRAVYTAPIKTISNQKYRDFSGKF-D--VG-LLTGDVSL-------- 478 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l-~~~~raIylsPtkaLsnQk~~~~~~~f-~--Vg-lltGdv~i-------- 478 (1379)
+..|.-++|+|.||.|||..+.-.+.... +++..++|++.- .=..|...++.... + .. +..|....
T Consensus 200 ~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlE-ms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~ 278 (448)
T PRK05748 200 LQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLE-MGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTI 278 (448)
T ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCC-CCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHH
Confidence 45678899999999999987665555543 557788887632 11233333332211 1 00 11222110
Q ss_pred ----CCCCceee-----ecHHHHHHHHhcCcccCCCccEEEEeccCCCCCc-----cchhHHHHHHHHcC-----ccceE
Q 039491 479 ----RPEASCLI-----MTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDI-----ERGVVWEEVIIMLP-----RHINI 539 (1379)
Q Consensus 479 ----n~~a~IlV-----~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~-----~rG~v~eeii~~Lp-----~~vqi 539 (1379)
-.+.++.| .|++.+++.+.+-.....++++||||=.|.|... .|...+.++...|. -++.+
T Consensus 279 a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke~~i~v 358 (448)
T PRK05748 279 AMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKALAKELKVPV 358 (448)
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhCCeE
Confidence 01123333 3555555444321111126889999999988522 22223334433331 25677
Q ss_pred EEeccc
Q 039491 540 VLLSAT 545 (1379)
Q Consensus 540 IlLSAT 545 (1379)
|++|-.
T Consensus 359 i~lsQl 364 (448)
T PRK05748 359 IALSQL 364 (448)
T ss_pred EEeccc
Confidence 777765
No 377
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.43 E-value=2.7 Score=53.36 Aligned_cols=37 Identities=19% Similarity=0.395 Sum_probs=25.0
Q ss_pred CCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEec
Q 039491 503 IRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLLS 543 (1379)
Q Consensus 503 l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlLS 543 (1379)
..+..++||||||++... ..+.++..+ |.++.+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~----a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ----SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHH----HHHHHHHHHhcCCCCceEEEEE
Confidence 456789999999999742 344444443 4567777665
No 378
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=86.40 E-value=1.3 Score=50.69 Aligned_cols=69 Identities=23% Similarity=0.407 Sum_probs=48.1
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEE
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAV 447 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raI 447 (1379)
+..+|++.+..+.-+..+.+.+ ++|.+ |--|+.-.| ..-+.|++.++.|+|||+.|
T Consensus 180 P~Ety~diGGle~QiQEiKEsv-----ELPLthPE~YeemGi---kpPKGVIlyG~PGTGKTLLA--------------- 236 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESV-----ELPLTHPEYYEEMGI---KPPKGVILYGEPGTGKTLLA--------------- 236 (440)
T ss_pred chhhhcccccHHHHHHHHHHhh-----cCCCCCHHHHHHcCC---CCCCeeEEeCCCCCchhHHH---------------
Confidence 5678999998887777777632 45555 444554333 23578999999999999864
Q ss_pred EecchHHHHHHHHHHHhc
Q 039491 448 YTAPIKTISNQKYRDFSG 465 (1379)
Q Consensus 448 ylsPtkaLsnQk~~~~~~ 465 (1379)
||.+||....|-+
T Consensus 237 -----KAVANqTSATFlR 249 (440)
T KOG0726|consen 237 -----KAVANQTSATFLR 249 (440)
T ss_pred -----HHHhcccchhhhh
Confidence 5677777666554
No 379
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=86.38 E-value=2.2 Score=52.06 Aligned_cols=104 Identities=18% Similarity=0.238 Sum_probs=53.3
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHHhcCC--cEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALATKHCT--RAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILR 493 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l~~~~--raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL~ 493 (1379)
.-+++.|++|+|||-.....-..++..+. +++|++.-.-. +.....++. -+.+.+.
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~-~~~v~a~~~---------------------~~~~~Fk 171 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFT-NDFVKALRD---------------------NEMEKFK 171 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHH-HHHHHHHHh---------------------hhHHHHH
Confidence 46899999999999754433334444433 55665543210 010011110 1112222
Q ss_pred HHHhcCcccCCCccEEEEeccCCCCCccch-hHHHHHHHHcCc-cceEEEecccCCCh
Q 039491 494 SMLYRGADIIRDIEWVIFDEVHYVNDIERG-VVWEEVIIMLPR-HINIVLLSATVPNT 549 (1379)
Q Consensus 494 smL~~~~~~l~~v~lVI~DEaH~l~d~~rG-~v~eeii~~Lp~-~vqiIlLSATvpN~ 549 (1379)
. .. .+++++||.++.+...++. ..+-.++..+.. ..|+|+.|-..|..
T Consensus 172 ~-------~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~ 221 (408)
T COG0593 172 E-------KY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKE 221 (408)
T ss_pred H-------hh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchh
Confidence 2 23 6889999999998754221 111222333433 33777777666644
No 380
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=86.27 E-value=5.2 Score=47.57 Aligned_cols=128 Identities=8% Similarity=0.058 Sum_probs=62.6
Q ss_pred HHHHHHHHH----HHCCC---cEEEEcCCCccHHHHHHHHHHHHHhcCC--cEEEecchHHHHHHHHHHHhccc--cEEE
Q 039491 403 NFQKEAIYY----LENGD---SVFVAAHTSAGKTVVAEYAFALATKHCT--RAVYTAPIKTISNQKYRDFSGKF--DVGL 471 (1379)
Q Consensus 403 ~~Q~eAI~~----L~~g~---sVlV~ApTGSGKTlvae~aI~~~l~~~~--raIylsPtkaLsnQk~~~~~~~f--~Vgl 471 (1379)
|||...... +.+|+ ..++++|.|.||+..|...+...+-... ...=.++. .+.+...- ++-.
T Consensus 6 PWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~s-------C~~~~~g~HPD~~~ 78 (319)
T PRK06090 6 PWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHS-------CELMQSGNHPDLHV 78 (319)
T ss_pred ccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHH-------HHHHHcCCCCCEEE
Confidence 445444444 44554 6899999999999876443333321111 00000111 12222211 4444
Q ss_pred EecCcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEeccc
Q 039491 472 LTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLLSAT 545 (1379)
Q Consensus 472 ltGdv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlLSAT 545 (1379)
+.-+. ....|-|-....+...++.. ......+++|||+||+|+ ......+++.| |+++.+|++|..
T Consensus 79 i~p~~---~~~~I~vdqiR~l~~~~~~~-~~~~~~kV~iI~~ae~m~----~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 79 IKPEK---EGKSITVEQIRQCNRLAQES-SQLNGYRLFVIEPADAMN----ESASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred EecCc---CCCcCCHHHHHHHHHHHhhC-cccCCceEEEecchhhhC----HHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 43211 01123222222222333222 234678999999999998 33455566655 345555655543
No 381
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=86.27 E-value=1.2 Score=52.71 Aligned_cols=57 Identities=11% Similarity=0.049 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHCCC-cEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHH
Q 039491 401 LDNFQKEAIYYLENGD-SVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQ 458 (1379)
Q Consensus 401 L~~~Q~eAI~~L~~g~-sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQ 458 (1379)
+++-|...+..+...+ |++|++.||||||.. +.++........|+|.+--|.+|--+
T Consensus 158 ~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~~~eRvItiEDtaELql~ 215 (355)
T COG4962 158 MIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFIDSDERVITIEDTAELQLA 215 (355)
T ss_pred cCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCCCcccEEEEeehhhhccC
Confidence 7888888888876554 999999999999975 35566666677799999988887443
No 382
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.26 E-value=1.7 Score=54.37 Aligned_cols=19 Identities=32% Similarity=0.357 Sum_probs=15.8
Q ss_pred cEEEEcCCCccHHHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~a 435 (1379)
.+++.||+|+|||.+|...
T Consensus 38 ~~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARIL 56 (472)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999886543
No 383
>PHA02542 41 41 helicase; Provisional
Probab=86.09 E-value=2.3 Score=53.23 Aligned_cols=38 Identities=16% Similarity=0.051 Sum_probs=29.9
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA 450 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls 450 (1379)
..|.-++|+|.+|.|||..+...+..+.+.+.+|+|++
T Consensus 188 ~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fS 225 (473)
T PHA02542 188 ERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYIS 225 (473)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEe
Confidence 34667899999999999987766656567788888886
No 384
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=86.00 E-value=4.7 Score=49.33 Aligned_cols=54 Identities=11% Similarity=0.108 Sum_probs=32.3
Q ss_pred cccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHH
Q 039491 372 AWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 372 ~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~a 435 (1379)
.|.++...+.....+...+..... ++. .+.. .-...+++.+|.|+|||.+|...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~--~~~~------~l~ha~Lf~Gp~G~GKt~lA~~l 56 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVA--AAGS------GMTHAWLFTGPPGSGRSVAARAF 56 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--ccc--ccCC------CCCeEEEEECCCCCcHHHHHHHH
Confidence 577777777777777665433211 000 0000 01346899999999999876443
No 385
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=85.89 E-value=7.4 Score=47.97 Aligned_cols=126 Identities=21% Similarity=0.221 Sum_probs=64.5
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHH-HhcC--CcEEEecch-HHHHHHHHHHHhccccEEEEecCcccCCCCceeeec
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALA-TKHC--TRAVYTAPI-KTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMT 488 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~-l~~~--~raIylsPt-kaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~T 488 (1379)
..|+.+.+++|||+|||.......... ..++ .-.+++..+ +.=+.++...+.+.+++... .+.+
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~------------~v~~ 256 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR------------SIKD 256 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee------------cCCC
Confidence 467789999999999998643222222 2222 234455544 22233334444443322221 1234
Q ss_pred HHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHH---cCccceEEEecccCCChHHHHHHHh
Q 039491 489 TEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIM---LPRHINIVLLSATVPNTVEFADWIG 557 (1379)
Q Consensus 489 pEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~---Lp~~vqiIlLSATvpN~~efa~wl~ 557 (1379)
+..+...+. .+++.+.|++|.+-+.... ....+++-.+ .++.-.++.||||.. ..++.+++.
T Consensus 257 ~~dl~~al~----~l~~~d~VLIDTaGrsqrd--~~~~~~l~~l~~~~~~~~~~LVl~at~~-~~~~~~~~~ 321 (420)
T PRK14721 257 IADLQLMLH----ELRGKHMVLIDTVGMSQRD--QMLAEQIAMLSQCGTQVKHLLLLNATSS-GDTLDEVIS 321 (420)
T ss_pred HHHHHHHHH----HhcCCCEEEecCCCCCcch--HHHHHHHHHHhccCCCceEEEEEcCCCC-HHHHHHHHH
Confidence 444443332 2567899999997433211 1222333222 124456788999953 334445554
No 386
>PRK07004 replicative DNA helicase; Provisional
Probab=85.70 E-value=2.4 Score=52.95 Aligned_cols=133 Identities=20% Similarity=0.188 Sum_probs=67.2
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHH-HHhcCCcEEEecchHHHHHHHHHHHhccc-cE---EEEecCcc---------
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFAL-ATKHCTRAVYTAPIKTISNQKYRDFSGKF-DV---GLLTGDVS--------- 477 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~-~l~~~~raIylsPtkaLsnQk~~~~~~~f-~V---glltGdv~--------- 477 (1379)
+..|+-++|+|.||.|||..+.-.+.. +++.+..++|.+.- -=..|...++-... +| .+..|..+
T Consensus 210 ~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlE-M~~~ql~~R~la~~~~v~~~~i~~g~l~~~e~~~~~~ 288 (460)
T PRK07004 210 MHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSME-MPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTH 288 (460)
T ss_pred CCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCC-CCHHHHHHHHHHhhcCCCHHHHhcCCCCHHHHHHHHH
Confidence 456788999999999999865533333 34567778777531 11223333332111 00 01122211
Q ss_pred ---cCCCCceee-----ecHHHHHHHHhcCcccCCCccEEEEeccCCCCCcc----chhHHHHHHHHcC-----ccceEE
Q 039491 478 ---LRPEASCLI-----MTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIE----RGVVWEEVIIMLP-----RHINIV 540 (1379)
Q Consensus 478 ---in~~a~IlV-----~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~----rG~v~eeii~~Lp-----~~vqiI 540 (1379)
.-.+.++.| +|+..++....+-......+++||||=.+.|.... |...+.++...|. -++.+|
T Consensus 289 a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi 368 (460)
T PRK07004 289 AVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVI 368 (460)
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEE
Confidence 001234444 35555544333211112357899999999886322 2223334433332 256777
Q ss_pred Eeccc
Q 039491 541 LLSAT 545 (1379)
Q Consensus 541 lLSAT 545 (1379)
+||--
T Consensus 369 ~lsQL 373 (460)
T PRK07004 369 ALSQL 373 (460)
T ss_pred EEecc
Confidence 77743
No 387
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=85.67 E-value=0.97 Score=52.04 Aligned_cols=37 Identities=8% Similarity=0.157 Sum_probs=31.5
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA 450 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls 450 (1379)
.|..++|++++|+|||..+.-.+...++++.+++|++
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4678999999999999987776666667788999998
No 388
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=85.59 E-value=1.8 Score=49.83 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHH
Q 039491 489 TEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVI 530 (1379)
Q Consensus 489 pEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii 530 (1379)
|+-|..+|. .+..=+++.+||+|+++ ...||++
T Consensus 91 ~gDlaaiLt----~Le~~DVLFIDEIHrl~-----~~vEE~L 123 (332)
T COG2255 91 PGDLAAILT----NLEEGDVLFIDEIHRLS-----PAVEEVL 123 (332)
T ss_pred hhhHHHHHh----cCCcCCeEEEehhhhcC-----hhHHHHh
Confidence 455666664 35666899999999985 4566665
No 389
>PF12846 AAA_10: AAA-like domain
Probab=85.50 E-value=1.1 Score=51.59 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=35.0
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISN 457 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsn 457 (1379)
+.+++|+|+||+|||+.+...+...+..+..++++=|.-+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCchHHH
Confidence 3579999999999999888777778888998999877655443
No 390
>PRK10436 hypothetical protein; Provisional
Probab=85.45 E-value=1.5 Score=54.71 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHH--CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEe
Q 039491 401 LDNFQKEAIYYLE--NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 449 (1379)
Q Consensus 401 L~~~Q~eAI~~L~--~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyl 449 (1379)
+.+-|.+.+..+. .+.-++|++|||||||... |+++..+....+-|++
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~~~~~~i~T 251 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLNTAQINICS 251 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhCCCCCEEEE
Confidence 3566666666553 3457999999999999864 6666666443333443
No 391
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=85.42 E-value=1 Score=50.36 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=38.5
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhc
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSG 465 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~ 465 (1379)
.|..+++.+++|+|||..+...+...++++.+++|++--.. ..|..+.+..
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~-~~~l~~~~~~ 65 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEER-EERILGYAKS 65 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHHH
Confidence 36788999999999998877777777788999999876542 4455555544
No 392
>PRK04328 hypothetical protein; Provisional
Probab=85.28 E-value=1.1 Score=51.41 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=32.2
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA 450 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls 450 (1379)
.|..++|.+++|+|||..+...+...++++.+++|++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4678999999999999988777777788899999986
No 393
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=85.20 E-value=0.94 Score=51.06 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=37.5
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhc
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSG 465 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~ 465 (1379)
.|..++|.+++|+|||..+...+...++++.+++|++=-... .+..+.+..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~-~~~~~~~~~ 74 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTS-KSYLKQMES 74 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCH-HHHHHHHHH
Confidence 367889999999999998877777777889999999754332 334444433
No 394
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=85.19 E-value=0.91 Score=50.87 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=30.9
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecc
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAP 451 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsP 451 (1379)
..|..+++.+++|+|||..+...+...++++.+++|++-
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 357889999999999998776555556677888988874
No 395
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=85.17 E-value=4.5 Score=50.49 Aligned_cols=88 Identities=11% Similarity=0.115 Sum_probs=55.7
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc----cEEEEecCcccCCCCceeeec
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF----DVGLLTGDVSLRPEASCLIMT 488 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f----~VglltGdv~in~~a~IlV~T 488 (1379)
..|.-+++.+++|+|||..+...+....+++.+++|++.--. ..|...+..+.. ++.++. + .+
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs-~~qi~~ra~rlg~~~~~l~~~~-------e-----~~ 158 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES-LQQIKMRAIRLGLPEPNLYVLS-------E-----TN 158 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC-HHHHHHHHHHcCCChHHeEEcC-------C-----CC
Confidence 346789999999999999877666666677788999986433 345444433321 111111 1 12
Q ss_pred HHHHHHHHhcCcccCCCccEEEEeccCCCC
Q 039491 489 TEILRSMLYRGADIIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 489 pEiL~smL~~~~~~l~~v~lVI~DEaH~l~ 518 (1379)
.+.+...+.. .+.++||+|.+..+.
T Consensus 159 ~~~I~~~i~~-----~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 159 WEQICANIEE-----ENPQACVIDSIQTLY 183 (454)
T ss_pred HHHHHHHHHh-----cCCcEEEEecchhhc
Confidence 3455554432 256899999998764
No 396
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=85.10 E-value=0.92 Score=50.02 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=32.2
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecch
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPI 452 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPt 452 (1379)
.|.-+.+.+++|+|||..+...+.....++.+++|+.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 467789999999999998877776666778889998774
No 397
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=84.93 E-value=4.1 Score=53.89 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHC--CCcEEEEcCCCccHHHHHHHHH
Q 039491 402 DNFQKEAIYYLEN--GDSVFVAAHTSAGKTVVAEYAF 436 (1379)
Q Consensus 402 ~~~Q~eAI~~L~~--g~sVlV~ApTGSGKTlvae~aI 436 (1379)
++.=.+.+..+.+ ..++++.+|+|+|||.++....
T Consensus 192 ~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la 228 (758)
T PRK11034 192 EKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_pred CHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHH
Confidence 4444445554543 4689999999999999876543
No 398
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=84.83 E-value=5 Score=49.07 Aligned_cols=57 Identities=21% Similarity=0.306 Sum_probs=36.3
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae 433 (1379)
....|.+++..+...+.+.+.+-. |+. +..|+.-. +...+.+++.+|+|+|||.++-
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~-----pl~~~~~~~~~g---~~~p~gvLL~GppGtGKT~lAk 183 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVEL-----PLKKPELFEEVG---IEPPKGVLLYGPPGTGKTLLAK 183 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH-----HhhCHHHHHhcC---CCCCCceEEECCCCCChHHHHH
Confidence 456899999888888888775422 211 11111100 1234679999999999998753
No 399
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.80 E-value=5.5 Score=51.23 Aligned_cols=38 Identities=18% Similarity=0.384 Sum_probs=25.3
Q ss_pred cCCCccEEEEeccCCCCCccchhHHHHHHHH---cCccceEEEec
Q 039491 502 IIRDIEWVIFDEVHYVNDIERGVVWEEVIIM---LPRHINIVLLS 543 (1379)
Q Consensus 502 ~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~---Lp~~vqiIlLS 543 (1379)
...+.+++||||+|++... ..+.++.. -|+++.+|+.+
T Consensus 116 ~~~~~KVvIIdev~~Lt~~----a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 116 SRSRYKIFIIDEVHMLSTN----AFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred ccCCceEEEEEChhhCCHH----HHHHHHHHHHcCCCCeEEEEEe
Confidence 3467899999999999742 23344433 35667777655
No 400
>PRK06904 replicative DNA helicase; Validated
Probab=84.79 E-value=2.7 Score=52.67 Aligned_cols=134 Identities=21% Similarity=0.181 Sum_probs=70.4
Q ss_pred HHHHCCCcEEEEcCCCccHHHHHHHHHHHH-HhcCCcEEEecchHHHHHHHHHHHhccc-cE---EEEec-Ccc------
Q 039491 410 YYLENGDSVFVAAHTSAGKTVVAEYAFALA-TKHCTRAVYTAPIKTISNQKYRDFSGKF-DV---GLLTG-DVS------ 477 (1379)
Q Consensus 410 ~~L~~g~sVlV~ApTGSGKTlvae~aI~~~-l~~~~raIylsPtkaLsnQk~~~~~~~f-~V---glltG-dv~------ 477 (1379)
.-+..|+-++|+|.||.|||..++-.+..+ ...+..++|.+.- -=..|...++-... +| .+..| ..+
T Consensus 216 ~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~ 294 (472)
T PRK06904 216 AGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLE-MPAEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAK 294 (472)
T ss_pred hccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEecc-CCHHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHH
Confidence 345667888999999999998664333333 3457778887653 22334444433221 10 11122 111
Q ss_pred -------cCCCCceee-----ecHHHHHHHHhcCcccCCCccEEEEeccCCCCCc----cchhHHHHHHHHcC-----cc
Q 039491 478 -------LRPEASCLI-----MTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDI----ERGVVWEEVIIMLP-----RH 536 (1379)
Q Consensus 478 -------in~~a~IlV-----~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~----~rG~v~eeii~~Lp-----~~ 536 (1379)
+....++.| .|+..+++...+-...-..+++||||=.+.|... .|...+.++...|. -+
T Consensus 295 ~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ 374 (472)
T PRK06904 295 ISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKELK 374 (472)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 111223444 3555555444321111135889999999988633 23333444433332 25
Q ss_pred ceEEEecc
Q 039491 537 INIVLLSA 544 (1379)
Q Consensus 537 vqiIlLSA 544 (1379)
+.+|+||-
T Consensus 375 ipVi~lsQ 382 (472)
T PRK06904 375 VPVVALSQ 382 (472)
T ss_pred CeEEEEEe
Confidence 77788774
No 401
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=84.72 E-value=4.1 Score=47.73 Aligned_cols=120 Identities=13% Similarity=0.052 Sum_probs=56.1
Q ss_pred CCc-EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHH-HHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHH
Q 039491 415 GDS-VFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKT-ISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEIL 492 (1379)
Q Consensus 415 g~s-VlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtka-LsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL 492 (1379)
..+ +++.+|.|+|||.+| ++++..+......-.-.+... .+.+... ....++-.++...... .+ .+.+.+
T Consensus 23 ~~halL~~Gp~G~Gktt~a-~~lA~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~d~lel~~s~~~~--~~---i~~~~v 94 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAA-LALAKELLCENPTGLLPCGHCRSCKLIPA--GNHPDFLELNPSDLRK--ID---IIVEQV 94 (325)
T ss_pred CCceeeeeCCCCCCHHHHH-HHHHHHHhCCCcccCCcccchhhhhHHhh--cCCCceEEecccccCC--Cc---chHHHH
Confidence 345 999999999999875 455554421110000111111 0100000 0000333333222111 11 344555
Q ss_pred HHHHhcCccc--CCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEec
Q 039491 493 RSMLYRGADI--IRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLS 543 (1379)
Q Consensus 493 ~smL~~~~~~--l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLS 543 (1379)
+.+....... .....+||+|||+.|.. +.+.....++..=|....+|+.+
T Consensus 95 r~~~~~~~~~~~~~~~kviiidead~mt~-~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 95 RELAEFLSESPLEGGYKVVIIDEADKLTE-DAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred HHHHHHhccCCCCCCceEEEeCcHHHHhH-HHHHHHHHHhccCCCCeEEEEEc
Confidence 5555443222 36789999999999975 22333333333334445555544
No 402
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=84.65 E-value=5.1 Score=52.13 Aligned_cols=133 Identities=17% Similarity=0.149 Sum_probs=79.1
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHH---h------cCCcEEEecchHHHHHHHHHHHhccc-----cEEEEec---CcccC
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALAT---K------HCTRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTG---DVSLR 479 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l---~------~~~raIylsPtkaLsnQk~~~~~~~f-----~VglltG---dv~in 479 (1379)
-.+++-.-|-|||+...-.++..- . ...-.++++|+ .+..|+..++.+.. .+.++.| +...-
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~~~l~v~v~~gr~kd~~el 232 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEEDKLSIYVYHGRTKDKSEL 232 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCccceEEEEecccccccchh
Confidence 368888999999987543333321 1 23457787886 67789988883333 5666777 11122
Q ss_pred CCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccC-CCh-HHHHHHHh
Q 039491 480 PEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATV-PNT-VEFADWIG 557 (1379)
Q Consensus 480 ~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATv-pN~-~efa~wl~ 557 (1379)
...+++++|+.++.+ ....--.+-.||+||+|.+.+...- .-...-.+. ...-..||+|. .|. .+|...++
T Consensus 233 ~~~dVVltTy~il~~----~~l~~i~w~Riildea~~ikn~~tq--~~~a~~~L~-a~~RWcLtgtPiqn~~~~lysl~~ 305 (674)
T KOG1001|consen 233 NSYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHTIKNKDTQ--IFKAVCQLD-AKYRWCLTGTPIQNNLDELYSLFK 305 (674)
T ss_pred cCCceEEeeHHHhhc----ccccceeEEEEEeccccccCCcchH--hhhhheeec-cceeeeecCChhhhhHHHHHHHHH
Confidence 245799999999974 1111123446899999999876433 111111121 23457788883 343 35555554
No 403
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=84.63 E-value=5 Score=43.58 Aligned_cols=109 Identities=15% Similarity=0.157 Sum_probs=54.2
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHHhc---CCcEEEecchHHHHHHHHHHHhc-cc-cEEEEecCcccCCCCceeeecHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALATKH---CTRAVYTAPIKTISNQKYRDFSG-KF-DVGLLTGDVSLRPEASCLIMTTE 490 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l~~---~~raIylsPtkaLsnQk~~~~~~-~f-~VglltGdv~in~~a~IlV~TpE 490 (1379)
...++.+|+|.|||..+...+...+.. +......++.- ..+.. .+ ++..+.-+.. . .+.+
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c-------~~~~~~~~~d~~~~~~~~~-----~---~~~~ 79 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSC-------RLIEAGNHPDLHRLEPEGQ-----S---IKVD 79 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHH-------HHHHcCCCCcEEEeccccC-----c---CCHH
Confidence 358899999999998765444443321 11111333321 11111 11 3333221110 1 2335
Q ss_pred HHHHHHhc--CcccCCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEec
Q 039491 491 ILRSMLYR--GADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLLS 543 (1379)
Q Consensus 491 iL~smL~~--~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlLS 543 (1379)
.++.++.. .........+|||||+|.+... ..+.++..+ |++..+|+++
T Consensus 80 ~i~~i~~~~~~~~~~~~~kviiide~~~l~~~----~~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 80 QVRELVEFLSRTPQESGRRVVIIEDAERMNEA----AANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred HHHHHHHHHccCcccCCeEEEEEechhhhCHH----HHHHHHHHhcCCCCCeEEEEEE
Confidence 55443322 1224567889999999999742 344444444 3445555543
No 404
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=84.32 E-value=9.6 Score=45.49 Aligned_cols=125 Identities=8% Similarity=0.052 Sum_probs=61.4
Q ss_pred HHHHHHHHH----HHCCC---cEEEEcCCCccHHHHHHHHHHHHHhcCC---cEEEecchHHHHHHHHHHHhccc--cEE
Q 039491 403 NFQKEAIYY----LENGD---SVFVAAHTSAGKTVVAEYAFALATKHCT---RAVYTAPIKTISNQKYRDFSGKF--DVG 470 (1379)
Q Consensus 403 ~~Q~eAI~~----L~~g~---sVlV~ApTGSGKTlvae~aI~~~l~~~~---raIylsPtkaLsnQk~~~~~~~f--~Vg 470 (1379)
|||..+... +.+|+ ..++.||.|.||+..|.......+-... ..-=.++ -.+.+...- ++-
T Consensus 5 PW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~-------sC~~~~~g~HPD~~ 77 (325)
T PRK06871 5 PWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCH-------SCHLFQAGNHPDFH 77 (325)
T ss_pred cchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCH-------HHHHHhcCCCCCEE
Confidence 444444444 44553 5789999999999876433332221111 0000111 122222222 444
Q ss_pred EEecCcccCCCCceeeecHHHHHHHHhc--CcccCCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEeccc
Q 039491 471 LLTGDVSLRPEASCLIMTTEILRSMLYR--GADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLLSAT 545 (1379)
Q Consensus 471 lltGdv~in~~a~IlV~TpEiL~smL~~--~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlLSAT 545 (1379)
.+... ....| ..+.+|.+... ....-...+++|+|+||+|+. .....++..| |+++-+|+.|..
T Consensus 78 ~i~p~----~~~~I---~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~----~AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 78 ILEPI----DNKDI---GVDQVREINEKVSQHAQQGGNKVVYIQGAERLTE----AAANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred EEccc----cCCCC---CHHHHHHHHHHHhhccccCCceEEEEechhhhCH----HHHHHHHHHhcCCCCCeEEEEEECC
Confidence 44321 01122 23444443322 112345789999999999983 3445555555 445655555443
No 405
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.24 E-value=6.2 Score=51.04 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=25.2
Q ss_pred cCCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEec
Q 039491 502 IIRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLLS 543 (1379)
Q Consensus 502 ~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlLS 543 (1379)
...+.++|||||+|.+.. ...+.++..+ |.++.+|+++
T Consensus 124 ~~~~~KVvIIdEad~Lt~----~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 124 QKGRYRVYIIDEVHMLST----AAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred hcCCCEEEEEeChhhcCH----HHHHHHHHHHhCCCCCeEEEEEe
Confidence 456789999999999974 2344555544 3455556554
No 406
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=84.23 E-value=4.4 Score=49.08 Aligned_cols=120 Identities=14% Similarity=0.078 Sum_probs=57.3
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHhcC---C-------cEEEecchHHHHHHHHHHHhccc--cEEEEec---CcccCCC
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATKHC---T-------RAVYTAPIKTISNQKYRDFSGKF--DVGLLTG---DVSLRPE 481 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~~~---~-------raIylsPtkaLsnQk~~~~~~~f--~VglltG---dv~in~~ 481 (1379)
..++.+|.|.||+..|.......+-.. . -.+-+++.-. ..+.+...- ++-.+.- +..-+..
T Consensus 43 A~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~----~c~~i~~~~HPDl~~i~~~~~~~~~~~~ 118 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP----VARRIAAGAHGGLLTLERSWNEKGKRLR 118 (365)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCCh----HHHHHHccCCCCeEEEeccccccccccc
Confidence 589999999999987654333333111 1 1111222211 223333222 4444432 1100112
Q ss_pred CceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEeccc
Q 039491 482 ASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLLSAT 545 (1379)
Q Consensus 482 a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlLSAT 545 (1379)
..|.|-..-.+...+... ..-....+|||||+|+++. .....++..+ |.++.+|++|..
T Consensus 119 ~~I~VdqiR~l~~~~~~~-~~~~~~kVviIDead~m~~----~aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 119 TVITVDEVRELISFFGLT-AAEGGWRVVIVDTADEMNA----NAANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred ccccHHHHHHHHHHhCcC-cccCCCEEEEEechHhcCH----HHHHHHHHHHhcCCCCeEEEEEECC
Confidence 334333332333333322 2345678999999999974 2333344333 445556655544
No 407
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=84.07 E-value=1.8 Score=49.96 Aligned_cols=49 Identities=18% Similarity=0.140 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHC--CCcEEEEcCCCccHHHHHHHHHHHHHh-cCCcEEEec
Q 039491 401 LDNFQKEAIYYLEN--GDSVFVAAHTSAGKTVVAEYAFALATK-HCTRAVYTA 450 (1379)
Q Consensus 401 L~~~Q~eAI~~L~~--g~sVlV~ApTGSGKTlvae~aI~~~l~-~~~raIyls 450 (1379)
+.+-|.+.+..+.. +..++++++||||||... .+++..+. .+.+++.+-
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~~~~~~iitiE 115 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELNTPEKNIITVE 115 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhCCCCCeEEEEC
Confidence 35667777766543 346899999999999864 45555554 344555553
No 408
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=84.05 E-value=1.6 Score=51.87 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=40.6
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYR 461 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~ 461 (1379)
.|.-+.|.+|+|+|||..+...++.+.+.+.+++|+.+--++..+..+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~ 101 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAK 101 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHH
Confidence 467889999999999999988888888889999999988777765433
No 409
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=84.02 E-value=4.2 Score=54.71 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=17.1
Q ss_pred CCcEEEEcCCCccHHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~ 434 (1379)
..++++.+|+|.|||.++..
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred CCceEEEcCCCCCHHHHHHH
Confidence 35899999999999988764
No 410
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=83.90 E-value=3.8 Score=54.59 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=18.8
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALAT 440 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l 440 (1379)
++..+++.+|+|+|||.++. +|+..+
T Consensus 346 ~~~~lll~GppG~GKT~lAk-~iA~~l 371 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGK-SIAKAL 371 (775)
T ss_pred CCceEEEECCCCCCHHHHHH-HHHHHh
Confidence 34579999999999998653 444444
No 411
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=83.83 E-value=1 Score=53.83 Aligned_cols=89 Identities=17% Similarity=0.200 Sum_probs=52.3
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHH
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEI 491 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEi 491 (1379)
+..+.+++|+++||||||... .+++..+....|++.+=-+.+|.-..+. -.+.+++.... ....-+...+.
T Consensus 157 v~~~~nili~G~tgSGKTTll-~aL~~~ip~~~ri~tiEd~~El~l~~~~-----n~~~~~~~~~~---~~~~~~~~~~l 227 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFT-NAALREIPAIERLITVEDAREIVLSNHP-----NRVHLLASKGG---QGRAKVTTQDL 227 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHH-HHHHhhCCCCCeEEEecCCCccccccCC-----CEEEEEecCCC---CCcCcCcHHHH
Confidence 356889999999999999853 5677777777787776555555321000 02333332111 11112333344
Q ss_pred HHHHHhcCcccCCCccEEEEeccC
Q 039491 492 LRSMLYRGADIIRDIEWVIFDEVH 515 (1379)
Q Consensus 492 L~smL~~~~~~l~~v~lVI~DEaH 515 (1379)
+...|+. +-++||++|+.
T Consensus 228 l~~~LR~------~PD~IivGEiR 245 (332)
T PRK13900 228 IEACLRL------RPDRIIVGELR 245 (332)
T ss_pred HHHHhcc------CCCeEEEEecC
Confidence 4444432 45799999998
No 412
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.69 E-value=3.5 Score=52.96 Aligned_cols=130 Identities=19% Similarity=0.237 Sum_probs=73.2
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcE-EEecchHHHHHHHHHHHhccc--cEEEEecCcccCCCCceeeec
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRA-VYTAPIKTISNQKYRDFSGKF--DVGLLTGDVSLRPEASCLIMT 488 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~ra-IylsPtkaLsnQk~~~~~~~f--~VglltGdv~in~~a~IlV~T 488 (1379)
+..|+.|-+++|.|+|||.++-+.....-....++ +==.|++.+-.++++.--..- .--++.|.+.-|-..-+.-+|
T Consensus 491 i~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t 570 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNAT 570 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCC
Confidence 46689999999999999998633222222333333 334788888777766322211 233444444322211111233
Q ss_pred HHHHHHHHhc-----------------------------------CcccCCCccEEEEeccCCCCCccchhHHHHHHHHc
Q 039491 489 TEILRSMLYR-----------------------------------GADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML 533 (1379)
Q Consensus 489 pEiL~smL~~-----------------------------------~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L 533 (1379)
.|.+.+.-.. ....+++-.++|+|||---.|.+-.....+.+..+
T Consensus 571 ~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~ 650 (716)
T KOG0058|consen 571 DEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRL 650 (716)
T ss_pred HHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHh
Confidence 3333211100 01246677889999999888887777777777666
Q ss_pred CccceEEEe
Q 039491 534 PRHINIVLL 542 (1379)
Q Consensus 534 p~~vqiIlL 542 (1379)
.++ +.++.
T Consensus 651 ~~~-rTVlv 658 (716)
T KOG0058|consen 651 MQG-RTVLV 658 (716)
T ss_pred hcC-CeEEE
Confidence 554 44444
No 413
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=83.57 E-value=0.83 Score=55.25 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=21.7
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHH
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALAT 440 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l 440 (1379)
+-+|+..++.||.|+|||+.+.. |+..+
T Consensus 166 IGkGQR~lIvgppGvGKTTLaK~-Ian~I 193 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLLQN-IANSI 193 (416)
T ss_pred cccCceEEEeCCCCCChhHHHHH-HHHHH
Confidence 46799999999999999976543 44444
No 414
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=83.50 E-value=1.2 Score=49.45 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=30.8
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA 450 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls 450 (1379)
.|.-++|.+++|+|||..+...+......+.+++|+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3567899999999999988777777777788999983
No 415
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=83.25 E-value=3.1 Score=52.15 Aligned_cols=64 Identities=19% Similarity=0.167 Sum_probs=47.5
Q ss_pred HHHHHHHHHH--HCCCcEEEEcCCCccHHHHHHHHHHHHHh------cCCcEEEecchHHHHHHHHHHHhcc
Q 039491 403 NFQKEAIYYL--ENGDSVFVAAHTSAGKTVVAEYAFALATK------HCTRAVYTAPIKTISNQKYRDFSGK 466 (1379)
Q Consensus 403 ~~Q~eAI~~L--~~g~sVlV~ApTGSGKTlvae~aI~~~l~------~~~raIylsPtkaLsnQk~~~~~~~ 466 (1379)
++|++-=..| +.++-++|++..|||||.+|+--++-.+- .+..|+++.|.+.+..-+.+.+-+.
T Consensus 212 TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeL 283 (747)
T COG3973 212 TIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPEL 283 (747)
T ss_pred HhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhh
Confidence 5566554444 55677899999999999998877766661 2345999999998877776666554
No 416
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=83.20 E-value=2.3 Score=46.06 Aligned_cols=34 Identities=21% Similarity=0.069 Sum_probs=28.4
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA 450 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls 450 (1379)
-+.|..++|-|||.+|.-..+.+..++.+|+++-
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQ 40 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQ 40 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 4677888999999998777778888999998773
No 417
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=83.06 E-value=7.7 Score=50.73 Aligned_cols=44 Identities=9% Similarity=0.052 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhHcCcccCCCccchhhHHhhhccCCchHHHHHHhhhcC
Q 039491 1182 PDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQ 1229 (1379)
Q Consensus 1182 ~e~~~r~~VL~~LgyID~~~~v~lKGrvAceI~s~~EL~lTEll~~n~ 1229 (1379)
++|..-..+|+.+..+-.+...-+- -|. +...+.++..|+-++.
T Consensus 605 ~~~~~~~~~~~~~~~~~~~~~fi~~---~~~-~~~~~~~~~~~~~~~~ 648 (725)
T PRK07133 605 VEFMEIAHFLKDLKILASSDNFILF---SSK-RDEIDELIIKLNKNNY 648 (725)
T ss_pred HHHHHHHHHHhhhheeeecCceEEE---ecC-ccchHHHHHHHHHhhH
Confidence 7888889999999988765432211 110 0145567777776665
No 418
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=83.05 E-value=1.3 Score=51.07 Aligned_cols=42 Identities=17% Similarity=0.189 Sum_probs=31.2
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHhcC-CcEEEecchHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATKHC-TRAVYTAPIKTI 455 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~-~raIylsPtkaL 455 (1379)
..+.+++++|+||||||... .+++..+... .+++++-...++
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHTTTSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHH-HHHhhhccccccceEEeccccce
Confidence 55789999999999999865 5566666665 777777665554
No 419
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=82.93 E-value=1.3 Score=50.75 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=39.2
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhc
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSG 465 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~ 465 (1379)
-.|..++|.+++|+|||.-+.-.+...++.+.+++|++-. +...+..+.+..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~-e~~~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE-ESPEELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEec-CCHHHHHHHHHH
Confidence 3578999999999999998777777888889999998753 334444444443
No 420
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=82.72 E-value=2.1 Score=54.83 Aligned_cols=47 Identities=23% Similarity=0.145 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHC--CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEe
Q 039491 402 DNFQKEAIYYLEN--GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 449 (1379)
Q Consensus 402 ~~~Q~eAI~~L~~--g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyl 449 (1379)
.+-|.+.+..+.. +..++|++|||||||... ++++..+....+-|++
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~~~~~~i~t 349 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILNTEEVNIST 349 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhCCCCceEEE
Confidence 5667777766533 446889999999999874 6666666443333433
No 421
>PRK09354 recA recombinase A; Provisional
Probab=82.67 E-value=1.8 Score=51.91 Aligned_cols=46 Identities=26% Similarity=0.206 Sum_probs=40.3
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQK 459 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk 459 (1379)
.|.-+.|.+|+|+|||..+...++.+.+.+.+++|+..-.++..+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~ 104 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVY 104 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHH
Confidence 3678899999999999999999999989999999999888877543
No 422
>PRK05636 replicative DNA helicase; Provisional
Probab=82.36 E-value=4.8 Score=50.81 Aligned_cols=39 Identities=28% Similarity=0.352 Sum_probs=27.6
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHH-HHhcCCcEEEec
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFAL-ATKHCTRAVYTA 450 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~-~l~~~~raIyls 450 (1379)
+..|+-++|+|.||.|||..++-.+.. +.+++..++|.+
T Consensus 262 l~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fS 301 (505)
T PRK05636 262 LRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFS 301 (505)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 455677899999999999866544433 345677777773
No 423
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=82.33 E-value=28 Score=40.62 Aligned_cols=153 Identities=20% Similarity=0.270 Sum_probs=87.7
Q ss_pred cccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCC-----cEEEEcCCCccHHHHHHHHHHHHHhc
Q 039491 368 QQKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGD-----SVFVAAHTSAGKTVVAEYAFALATKH 442 (1379)
Q Consensus 368 ~~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~-----sVlV~ApTGSGKTlvae~aI~~~l~~ 442 (1379)
++.-.|.++...+.-.+++.+.+. +|.+ ++++..|+ -+++-+|.|+||+..| -+-+-..
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVI-----LPIK--------FPqlFtGkR~PwrgiLLyGPPGTGKSYLA---KAVATEA 190 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVI-----LPIK--------FPQLFTGKRKPWRGILLYGPPGTGKSYLA---KAVATEA 190 (439)
T ss_pred CCCCchhhhccchhHHHHHHhhee-----eccc--------chhhhcCCCCcceeEEEeCCCCCcHHHHH---HHHHhhc
Confidence 456789999888888888887432 2221 24566664 4899999999999753 2222222
Q ss_pred CCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCc--
Q 039491 443 CTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDI-- 520 (1379)
Q Consensus 443 ~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~-- 520 (1379)
+ .+++-+-.-.|+..|. +-.|.|..-|..-+ --..-.+|.+||++.+...
T Consensus 191 n-STFFSvSSSDLvSKWm--------------------------GESEkLVknLFemA-Re~kPSIIFiDEiDslcg~r~ 242 (439)
T KOG0739|consen 191 N-STFFSVSSSDLVSKWM--------------------------GESEKLVKNLFEMA-RENKPSIIFIDEIDSLCGSRS 242 (439)
T ss_pred C-CceEEeehHHHHHHHh--------------------------ccHHHHHHHHHHHH-HhcCCcEEEeehhhhhccCCC
Confidence 3 5666666666665542 22344433332210 0123468999999977422
Q ss_pred ------cchhHHHHHHHHcC---ccceEEEeccc-CCChHHHHHHHhhhcCCcEEE
Q 039491 521 ------ERGVVWEEVIIMLP---RHINIVLLSAT-VPNTVEFADWIGRTKQKKIRV 566 (1379)
Q Consensus 521 ------~rG~v~eeii~~Lp---~~vqiIlLSAT-vpN~~efa~wl~~~~~~~i~v 566 (1379)
.|....|.++.|-. ..-.++.|-|| +|=..+ .-|.+...+.||+
T Consensus 243 enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LD--sAIRRRFekRIYI 296 (439)
T KOG0739|consen 243 ENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLD--SAIRRRFEKRIYI 296 (439)
T ss_pred CCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHH--HHHHHHhhcceec
Confidence 23344455555532 34578889999 443332 3444444444443
No 424
>PRK08840 replicative DNA helicase; Provisional
Probab=82.30 E-value=3.7 Score=51.31 Aligned_cols=40 Identities=28% Similarity=0.229 Sum_probs=28.7
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHH-HhcCCcEEEecc
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALA-TKHCTRAVYTAP 451 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~-l~~~~raIylsP 451 (1379)
+..|+-++|+|.||.|||..++-.+..+ .+++..++|.+.
T Consensus 214 ~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSl 254 (464)
T PRK08840 214 LQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSL 254 (464)
T ss_pred CCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4567888999999999998664333333 355777888764
No 425
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=82.29 E-value=3.5 Score=51.80 Aligned_cols=38 Identities=24% Similarity=0.438 Sum_probs=27.4
Q ss_pred cCCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEec
Q 039491 502 IIRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLLS 543 (1379)
Q Consensus 502 ~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlLS 543 (1379)
.-.+.+..||||||++. ...|..++..| |+|+.+|+.|
T Consensus 116 ~~~ryKVyiIDEvHMLS----~~afNALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 116 SEGRYKVYIIDEVHMLS----KQAFNALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred ccccceEEEEecHHhhh----HHHHHHHhcccccCccCeEEEEec
Confidence 45688999999999997 44567777666 4566655543
No 426
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=82.28 E-value=8.1 Score=45.89 Aligned_cols=49 Identities=14% Similarity=0.299 Sum_probs=29.4
Q ss_pred HHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc--CccceEEEecc
Q 039491 491 ILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML--PRHINIVLLSA 544 (1379)
Q Consensus 491 iL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L--p~~vqiIlLSA 544 (1379)
.+...+... ......++||||++|.|+.. ....++..| |++..+|++|.
T Consensus 111 ~i~~~l~~~-p~~~~~kVvII~~ae~m~~~----aaNaLLK~LEEPp~~~fILi~~ 161 (314)
T PRK07399 111 EIKRFLSRP-PLEAPRKVVVIEDAETMNEA----AANALLKTLEEPGNGTLILIAP 161 (314)
T ss_pred HHHHHHccC-cccCCceEEEEEchhhcCHH----HHHHHHHHHhCCCCCeEEEEEC
Confidence 333334333 23467899999999999742 344444444 34665666554
No 427
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=82.27 E-value=9.6 Score=47.15 Aligned_cols=120 Identities=13% Similarity=0.095 Sum_probs=60.4
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHH-hcCCcEEEec--chHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecH-HHH
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALAT-KHCTRAVYTA--PIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTT-EIL 492 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l-~~~~raIyls--PtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~Tp-EiL 492 (1379)
.+++++++|+|||.++.-.+.... +.+.+++++. +.|+-+.++...+.+...+.++..... ..| ++.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~---------~~P~~i~ 171 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKG---------QSPVEIA 171 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCC---------CCHHHHH
Confidence 578999999999987544333332 4566665553 234445555555544433332221111 112 222
Q ss_pred HHHHhcCcccCCCccEEEEeccCCCCCcc-chhHHHHHHHHcCccceEEEecccCC
Q 039491 493 RSMLYRGADIIRDIEWVIFDEVHYVNDIE-RGVVWEEVIIMLPRHINIVLLSATVP 547 (1379)
Q Consensus 493 ~smL~~~~~~l~~v~lVI~DEaH~l~d~~-rG~v~eeii~~Lp~~vqiIlLSATvp 547 (1379)
...+.. ....+.++||+|=+-++.... .-..+..+...+.++--++.++||..
T Consensus 172 ~~al~~--~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg 225 (428)
T TIGR00959 172 RRALEY--AKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG 225 (428)
T ss_pred HHHHHH--HHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch
Confidence 222211 112457899999988765221 11122222333434444777788754
No 428
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=81.71 E-value=3.3 Score=52.98 Aligned_cols=126 Identities=16% Similarity=0.156 Sum_probs=80.6
Q ss_pred CCCCCCHHHHHHHHHHHCC--CcEEEEcCCCccHHHHHHHHHHHHHh-cCCcEEEecchHHHHHHHH-HHHhccc-c---
Q 039491 397 FPFELDNFQKEAIYYLENG--DSVFVAAHTSAGKTVVAEYAFALATK-HCTRAVYTAPIKTISNQKY-RDFSGKF-D--- 468 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~L~~g--~sVlV~ApTGSGKTlvae~aI~~~l~-~~~raIylsPtkaLsnQk~-~~~~~~f-~--- 468 (1379)
|-++.+|||.+.+.++-.. +.|.+..++-+|||.+.+-.|...+. ....++|+.||..++.... .+|...+ .
T Consensus 13 w~~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~ 92 (557)
T PF05876_consen 13 WRTDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIRASPV 92 (557)
T ss_pred CCCCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHHhCHH
Confidence 4447899999999998554 57999999999999977666665553 3467999999999998865 4555554 1
Q ss_pred -EEEEec------Cccc----CCCCceeeec---HHHHHHHHhcCcccCCCccEEEEeccCCCCC--ccchhHHHHHHH
Q 039491 469 -VGLLTG------DVSL----RPEASCLIMT---TEILRSMLYRGADIIRDIEWVIFDEVHYVND--IERGVVWEEVII 531 (1379)
Q Consensus 469 -VglltG------dv~i----n~~a~IlV~T---pEiL~smL~~~~~~l~~v~lVI~DEaH~l~d--~~rG~v~eeii~ 531 (1379)
-+.+.. +.++ -+...+.++. |..|+ -..+++|++||++...+ ..-|..++....
T Consensus 93 l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~~~l~---------s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~ 162 (557)
T PF05876_consen 93 LRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANSPSNLR---------SRPARYLLLDEVDRYPDDVGGEGDPVELAEK 162 (557)
T ss_pred HHHHhCchhhcccCCchhheecCCCEEEEEeCCCCcccc---------cCCcCEEEEechhhccccCccCCCHHHHHHH
Confidence 022222 1111 1122333332 22332 24678999999998843 233555555443
No 429
>PRK12608 transcription termination factor Rho; Provisional
Probab=81.69 E-value=1.1 Score=54.02 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=27.0
Q ss_pred HHHHHHHHHH---HCCCcEEEEcCCCccHHHHHHHHHHHHH
Q 039491 403 NFQKEAIYYL---ENGDSVFVAAHTSAGKTVVAEYAFALAT 440 (1379)
Q Consensus 403 ~~Q~eAI~~L---~~g~sVlV~ApTGSGKTlvae~aI~~~l 440 (1379)
..-.++|+.+ -+|+.++|.|+.|+|||++.-. ++..+
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~-la~~i 157 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQ-IAAAV 157 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHH-HHHHH
Confidence 4455577775 4789999999999999987543 44444
No 430
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.55 E-value=10 Score=49.00 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=16.5
Q ss_pred CcEEEEcCCCccHHHHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYAF 436 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI 436 (1379)
..+++.||.|+|||.++....
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 356999999999998765443
No 431
>PRK08006 replicative DNA helicase; Provisional
Probab=81.18 E-value=4.9 Score=50.35 Aligned_cols=134 Identities=21% Similarity=0.159 Sum_probs=69.0
Q ss_pred HHHCCCcEEEEcCCCccHHHHHHHHHHHH-HhcCCcEEEecchHHHHHHHHHHHhccc-cE---EEEecCcc--------
Q 039491 411 YLENGDSVFVAAHTSAGKTVVAEYAFALA-TKHCTRAVYTAPIKTISNQKYRDFSGKF-DV---GLLTGDVS-------- 477 (1379)
Q Consensus 411 ~L~~g~sVlV~ApTGSGKTlvae~aI~~~-l~~~~raIylsPtkaLsnQk~~~~~~~f-~V---glltGdv~-------- 477 (1379)
-+..|+-++|+|.+|.|||..+.-.+..+ .+.+..++|.+.- -=..|...++-... +| .+..|..+
T Consensus 220 Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlE-M~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~ 298 (471)
T PRK08006 220 GLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLE-MPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARIS 298 (471)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEecc-CCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHH
Confidence 34567788999999999998665444343 3557778887643 11223333333211 10 01122211
Q ss_pred -----cCCCCceee-----ecHHHHHHHHhcCcccCCCccEEEEeccCCCCCc----cchhHHHHHHHHcC-----ccce
Q 039491 478 -----LRPEASCLI-----MTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDI----ERGVVWEEVIIMLP-----RHIN 538 (1379)
Q Consensus 478 -----in~~a~IlV-----~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~----~rG~v~eeii~~Lp-----~~vq 538 (1379)
+..+.++.| +|+.-++....+-......+++||||=.|.|... .|...+.++...|. -++.
T Consensus 299 ~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ip 378 (471)
T PRK08006 299 GTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVP 378 (471)
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHhCCe
Confidence 102234443 3555444433221111135899999999988532 23333444443332 2577
Q ss_pred EEEeccc
Q 039491 539 IVLLSAT 545 (1379)
Q Consensus 539 iIlLSAT 545 (1379)
+|+||-.
T Consensus 379 Vi~LsQL 385 (471)
T PRK08006 379 VVALSQL 385 (471)
T ss_pred EEEEEec
Confidence 7777743
No 432
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=81.16 E-value=1.6 Score=50.25 Aligned_cols=40 Identities=20% Similarity=0.147 Sum_probs=30.2
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHHhc-CCcEEEecc
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALATKH-CTRAVYTAP 451 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~-~~raIylsP 451 (1379)
+..|..++++|+||+|||..+...+...... +.+++|++-
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 4668899999999999998655444444444 888988874
No 433
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=81.12 E-value=1.6 Score=54.92 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=41.0
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhcc
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGK 466 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~ 466 (1379)
.|..++|.+|+|+|||+.+...+...++++.+++|++- -+=..|..++....
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~-eEs~~~i~~~~~~l 313 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAY-EESRAQLLRNAYSW 313 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe-eCCHHHHHHHHHHc
Confidence 45789999999999999888888888889999999883 44455666665543
No 434
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=80.95 E-value=3.4 Score=52.99 Aligned_cols=65 Identities=22% Similarity=0.333 Sum_probs=36.1
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEE-ecchHHHHHHHHHHHhccc--cEEEEecCc
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVY-TAPIKTISNQKYRDFSGKF--DVGLLTGDV 476 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIy-lsPtkaLsnQk~~~~~~~f--~VglltGdv 476 (1379)
+..|+.+-+++|||||||...-+..-..-...+++++ =.+++.+.....++--..- +..++.|.+
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI 419 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTI 419 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccH
Confidence 5678999999999999987643222211122444555 3556655544433333221 555555433
No 435
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=80.72 E-value=6.4 Score=48.41 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=52.3
Q ss_pred hHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHH--HhcCCcEEEecchHHHHH
Q 039491 380 EAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALA--TKHCTRAVYTAPIKTISN 457 (1379)
Q Consensus 380 ~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~--l~~~~raIylsPtkaLsn 457 (1379)
..+++.+...+.+ +|.+|++|.-..-.|.- .+.+-.|||||.+..+-.+.. .+..-++++|.=||.|+.
T Consensus 150 ~a~l~~ieskIan--------fD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s 220 (660)
T COG3972 150 NALLDTIESKIAN--------FDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILAS 220 (660)
T ss_pred HHHHHHHHHHHhc--------ccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcCCCCceEEEEeehHHHHH
Confidence 3455555553322 58899988765555655 678889999998743322222 144679999999999988
Q ss_pred HHHHHHhccc
Q 039491 458 QKYRDFSGKF 467 (1379)
Q Consensus 458 Qk~~~~~~~f 467 (1379)
+..+.+.+.|
T Consensus 221 ~~r~lv~~F~ 230 (660)
T COG3972 221 TMRTLVPEFF 230 (660)
T ss_pred HHHHHHHHHH
Confidence 8765555543
No 436
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=80.67 E-value=3 Score=48.52 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=41.8
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhcc
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGK 466 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~ 466 (1379)
|.-+=|.+|-|||||.++.-+++.+.+.+.+++|+---.+|.-+-...+...
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~ 111 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVD 111 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 4455689999999999999999999999999999977776666655555543
No 437
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=80.65 E-value=6.9 Score=46.24 Aligned_cols=120 Identities=15% Similarity=0.171 Sum_probs=66.7
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEe-------c---chHHHHHHHHHHHhccccEEEEecCcccCCCCce
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT-------A---PIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASC 484 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyl-------s---PtkaLsnQk~~~~~~~f~VglltGdv~in~~a~I 484 (1379)
+.+|++.+|-|||||..--+.+......+.+.+.+ + -.+.++.|...++... +...|..+-
T Consensus 49 snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~---~k~~gsfte------ 119 (408)
T KOG2228|consen 49 SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRI---VKSFGSFTE------ 119 (408)
T ss_pred CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh---heeecccch------
Confidence 46899999999999975444444422333333322 1 2344555554444432 222221110
Q ss_pred eeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEecccC
Q 039491 485 LIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLLSATV 546 (1379)
Q Consensus 485 lV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlLSATv 546 (1379)
+-+.|...|..+...-.--=+.|+||.|......|......++.+. ...+-++|+|--+
T Consensus 120 ---~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 120 ---NLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred ---hHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 1134455555543333333467899999887777777666655443 3457788887665
No 438
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=80.64 E-value=16 Score=46.91 Aligned_cols=134 Identities=13% Similarity=0.195 Sum_probs=66.9
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh--cCC--
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK--HCT-- 444 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~--~~~-- 444 (1379)
..+.|.++...++.+..+...+..- .+ ....++++|.|.|||.++.. ++.++. ++.
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~~--~i-----------------~hayLf~Gp~G~GKTt~Ar~-lAk~L~c~~~~~~ 70 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIESN--KI-----------------ANAYIFSGPRGVGKTSSARA-FARCLNCVNGPTP 70 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC--CC-----------------CeEEEEECCCCCCHHHHHHH-HHHhhccccCCCC
Confidence 4456777777777666665532110 00 13579999999999987643 444442 111
Q ss_pred -cEEEecchHHHHHHHHHHHhcc--ccEEEEecCcccCCCCceeeecHHHHHHHHhc--CcccCCCccEEEEeccCCCCC
Q 039491 445 -RAVYTAPIKTISNQKYRDFSGK--FDVGLLTGDVSLRPEASCLIMTTEILRSMLYR--GADIIRDIEWVIFDEVHYVND 519 (1379)
Q Consensus 445 -raIylsPtkaLsnQk~~~~~~~--f~VglltGdv~in~~a~IlV~TpEiL~smL~~--~~~~l~~v~lVI~DEaH~l~d 519 (1379)
.+-. ||. .+.+... +++..+.|... ...+.++.+... ......+.+++|+||+|.+..
T Consensus 71 ~pC~~-C~~-------C~~i~~~~~~dv~~idgas~---------~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~ 133 (563)
T PRK06647 71 MPCGE-CSS-------CKSIDNDNSLDVIEIDGASN---------TSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN 133 (563)
T ss_pred CCCcc-chH-------HHHHHcCCCCCeEEecCccc---------CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH
Confidence 1111 111 1222221 14444433211 112333333211 112356789999999999974
Q ss_pred ccchhHHHHHHHHc---CccceEEEec
Q 039491 520 IERGVVWEEVIIML---PRHINIVLLS 543 (1379)
Q Consensus 520 ~~rG~v~eeii~~L---p~~vqiIlLS 543 (1379)
. .+..++..+ |.++.+|+.+
T Consensus 134 ~----a~naLLK~LEepp~~~vfI~~t 156 (563)
T PRK06647 134 S----AFNALLKTIEEPPPYIVFIFAT 156 (563)
T ss_pred H----HHHHHHHhhccCCCCEEEEEec
Confidence 2 344455444 3445555433
No 439
>CHL00176 ftsH cell division protein; Validated
Probab=80.15 E-value=6.8 Score=50.91 Aligned_cols=57 Identities=19% Similarity=0.252 Sum_probs=35.3
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae 433 (1379)
....|.++...+.....+.+++..+.. +..|+.-. ....+.+++.+|+|+|||..+-
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~lk~-----~~~~~~~g---~~~p~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSFLKK-----PERFTAVG---AKIPKGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHHHhC-----HHHHhhcc---CCCCceEEEECCCCCCHHHHHH
Confidence 345788888877777777765432211 11121111 1224579999999999998764
No 440
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=79.98 E-value=1.9 Score=48.20 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=31.3
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecch
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPI 452 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPt 452 (1379)
.|..+++++++|+|||..+.-.+...+..+.+++|+.=-
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 366889999999999988776666666778888888654
No 441
>PRK10865 protein disaggregation chaperone; Provisional
Probab=79.89 E-value=5.1 Score=53.92 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCccHHHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~a 435 (1379)
..++++.+|+|+|||.++...
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~l 219 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEGL 219 (857)
T ss_pred cCceEEECCCCCCHHHHHHHH
Confidence 358999999999999987533
No 442
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=79.60 E-value=1.7 Score=51.38 Aligned_cols=88 Identities=15% Similarity=0.140 Sum_probs=49.4
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHH
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEI 491 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEi 491 (1379)
+..+.+++++++||||||... .++...+....+++++-.+.+|.-.. ...+.+.+.... .. ..-.|.+.
T Consensus 141 v~~~~~ili~G~tGsGKTTll-~al~~~~~~~~~iv~ied~~El~~~~------~~~~~l~~~~~~---~~-~~~~~~~~ 209 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFL-KSLVDEIPKDERIITIEDTREIFLPH------PNYVHLFYSKGG---QG-LAKVTPKD 209 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHH-HHHHccCCccccEEEEcCccccCCCC------CCEEEEEecCCC---CC-cCccCHHH
Confidence 457889999999999999864 44555555566777665444432211 113444433211 11 11234444
Q ss_pred HHHHHhcCcccCCCccEEEEeccC
Q 039491 492 LRSMLYRGADIIRDIEWVIFDEVH 515 (1379)
Q Consensus 492 L~smL~~~~~~l~~v~lVI~DEaH 515 (1379)
+.....+ .+-+++|+||+=
T Consensus 210 ~l~~~Lr-----~~pd~ii~gE~r 228 (308)
T TIGR02788 210 LLQSCLR-----MRPDRIILGELR 228 (308)
T ss_pred HHHHHhc-----CCCCeEEEeccC
Confidence 4333222 356789999987
No 443
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=79.48 E-value=3.3 Score=44.97 Aligned_cols=128 Identities=14% Similarity=0.079 Sum_probs=66.5
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEEEecCcc--cC-CCCceeeecHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVS--LR-PEASCLIMTTEIL 492 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~--in-~~a~IlV~TpEiL 492 (1379)
-+.|--..|=|||.+|.=-.++++.+|.||+++-=.|--...=-..+.+.+ .+.+...+.. .. .+.. --..+..
T Consensus 23 li~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg~~~~GE~~~l~~~~~v~~~~~g~~~~~~~~~~~--~~~~~~~ 100 (178)
T PRK07414 23 LVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDRPIQLGQNLDWVRCDLPRCLDTPHLD--ESEKKAL 100 (178)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecCCCcchHHHHHHhCCCcEEEECCCCCeeeCCCcC--HHHHHHH
Confidence 456667788999999888888888999999998766654211111122222 3444332221 10 0100 0000111
Q ss_pred HHHHhcCcc--cCCCccEEEEeccCCCCCccchhHHHHHHHH---cCccceEEEecccCC
Q 039491 493 RSMLYRGAD--IIRDIEWVIFDEVHYVNDIERGVVWEEVIIM---LPRHINIVLLSATVP 547 (1379)
Q Consensus 493 ~smL~~~~~--~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~---Lp~~vqiIlLSATvp 547 (1379)
...+..... .-..+++||+||+=+..+.+ -...++++.. -|++.-+|+---..|
T Consensus 101 ~~~~~~a~~~l~~~~~dlvVLDEi~~Al~~g-li~~eeVl~~L~~rp~~~evILTGR~~p 159 (178)
T PRK07414 101 QELWQYTQAVVDEGRYSLVVLDELSLAIQFG-LIPETEVLEFLEKRPSHVDVILTGPEMP 159 (178)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhHHHHHCC-CccHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 222211111 12578999999998876542 1223444444 455555555444444
No 444
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=79.42 E-value=12 Score=43.54 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=18.3
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHHh
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALATK 441 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l~ 441 (1379)
.++++.+|||+|||... .+++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~-~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLL-RDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHH-HHHhCccC
Confidence 68999999999999753 34444443
No 445
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=79.42 E-value=4.8 Score=48.32 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=15.3
Q ss_pred CcEEEEcCCCccHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlva 432 (1379)
+|++..+|+|+|||++|
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 68999999999999863
No 446
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=79.31 E-value=8 Score=50.84 Aligned_cols=80 Identities=10% Similarity=0.053 Sum_probs=63.5
Q ss_pred CCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHH
Q 039491 684 SLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVK 763 (1379)
Q Consensus 684 ~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~R 763 (1379)
++.+++|.++|+.-|.+.+..+..+. .-+.-.++++||+++..+|
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~-----------------------------------~~~~i~v~ll~G~~~~~~r 353 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLL-----------------------------------EPLGIRVALLTGSLKGKER 353 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHH-----------------------------------hhcCcEEEEEcCCCCHHHH
Confidence 35789999999999999988876521 0011237899999999999
Q ss_pred HHHHHHhcCCCeeEEEecc-cccccCCCCCceEEEc
Q 039491 764 EVIEMLFCRGVVKVLFSTE-TFAMGVNAPARTVVFD 798 (1379)
Q Consensus 764 e~Ve~lF~~G~ikVLVATe-tla~GINiPa~tvVI~ 798 (1379)
..+.....+|.+.|+|+|. .+...+.+....+||-
T Consensus 354 ~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 354 REILEAIASGEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred HHHHHHHhCCCCCEEEchHHHhcccchhcccceEEE
Confidence 9999999999999999996 4555678888877653
No 447
>PRK09165 replicative DNA helicase; Provisional
Probab=79.12 E-value=5.8 Score=50.07 Aligned_cols=40 Identities=25% Similarity=0.210 Sum_probs=27.1
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHHh---------------cCCcEEEecc
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALATK---------------HCTRAVYTAP 451 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l~---------------~~~raIylsP 451 (1379)
+..|+-++|+|.||.|||..++-.+..... ++.+++|++.
T Consensus 214 ~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl 268 (497)
T PRK09165 214 LHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL 268 (497)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeC
Confidence 355678999999999999865443333322 2567888754
No 448
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.97 E-value=9.9 Score=49.29 Aligned_cols=50 Identities=8% Similarity=0.091 Sum_probs=29.4
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae 433 (1379)
..+..+++...++.+..+..++... .+. ...++-+++.+|+|+|||.++-
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~----~~~-----------~~~~~illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQ----VLE-----------NAPKRILLITGPSGCGKSTTIK 128 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhc----ccc-----------cCCCcEEEEECCCCCCHHHHHH
Confidence 3445566666666666655533221 000 1124458999999999998653
No 449
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=78.90 E-value=4.6 Score=53.47 Aligned_cols=83 Identities=16% Similarity=0.091 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhcc
Q 039491 670 VSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRR 749 (1379)
Q Consensus 670 ~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~r 749 (1379)
+..+-.++.......+.++++.++|..-+.++++.|.+..-... .+..
T Consensus 110 KTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~--------------------------------~~~~ 157 (1187)
T COG1110 110 KTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAG--------------------------------SLDV 157 (1187)
T ss_pred hhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcC--------------------------------Ccce
Confidence 44455555555555568899999999999999988876421111 0111
Q ss_pred ceEEecCCCChHHHHHHHHHhcCCCeeEEEeccccc
Q 039491 750 GIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFA 785 (1379)
Q Consensus 750 GIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla 785 (1379)
-+. +||.|+..+|+.+++.|.+|..+|||+|+.|.
T Consensus 158 ~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL 192 (1187)
T COG1110 158 LVV-YHSALPTKEKEEALERIESGDFDILITTSQFL 192 (1187)
T ss_pred eee-eccccchHHHHHHHHHHhcCCccEEEEeHHHH
Confidence 123 99999999999999999999999999998653
No 450
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=78.84 E-value=2 Score=54.09 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=36.5
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhc-CCcEEEecchHHHHHHHHHHHhc
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKH-CTRAVYTAPIKTISNQKYRDFSG 465 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~-~~raIylsPtkaLsnQk~~~~~~ 465 (1379)
.|..++|++++|+|||+.+...+...+++ +.+++|++=- +-..+..+.+..
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e-E~~~~l~~~~~~ 71 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE-ESPQDIIKNARS 71 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe-cCHHHHHHHHHH
Confidence 46789999999999999877766666665 8899999842 333344444443
No 451
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=78.81 E-value=1.6 Score=54.38 Aligned_cols=55 Identities=18% Similarity=0.067 Sum_probs=42.4
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEEE
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLL 472 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~Vgll 472 (1379)
.+++|.||||||||..+.++.+ +.....+|++-|--+|.......+++.+ +|-++
T Consensus 45 ~h~lvig~tgSGKt~~~viP~l--l~~~~s~iV~D~KgEl~~~t~~~r~~~G~~V~vl 100 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNL--LNYPGSMIVTDPKGELYEKTAGYRKKRGYKVYVL 100 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHH--HhccCCEEEEECCCcHHHHHHHHHHHCCCEEEEe
Confidence 4799999999999998776654 3344589999999999888777776655 55443
No 452
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=78.78 E-value=4.2 Score=53.88 Aligned_cols=57 Identities=21% Similarity=0.398 Sum_probs=37.5
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae 433 (1379)
....|.+++..+.....+.+.+- +|+. +.-++.-. +..++.+++.+|+|+|||..+-
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~-----~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~lar 230 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVE-----LPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLLAK 230 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH-----HHhhCHHHHHhcC---CCCCceEEEECCCCCChHHHHH
Confidence 45689999988888888877542 2221 11222111 2456789999999999998653
No 453
>PRK08760 replicative DNA helicase; Provisional
Probab=78.72 E-value=3.8 Score=51.40 Aligned_cols=132 Identities=21% Similarity=0.209 Sum_probs=69.4
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHH-hcCCcEEEecchHHHHHHHHHHHhccc-cEE---EEecCccc--------
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALAT-KHCTRAVYTAPIKTISNQKYRDFSGKF-DVG---LLTGDVSL-------- 478 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l-~~~~raIylsPtkaLsnQk~~~~~~~f-~Vg---lltGdv~i-------- 478 (1379)
+..|.-++|+|.||.|||..+.-.+..+. +++..++|.+.--. ..|...++.... .+. +..|..+-
T Consensus 226 ~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs-~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~~~~ 304 (476)
T PRK08760 226 LQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMS-ASQLAMRLISSNGRINAQRLRTGALEDEDWARVTG 304 (476)
T ss_pred CCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCC-HHHHHHHHHHhhCCCcHHHHhcCCCCHHHHHHHHH
Confidence 45677889999999999987665554443 55777888765211 234444443221 110 11222110
Q ss_pred ----CCCCceee-----ecHHHHHHHHhcCcccCCCccEEEEeccCCCCCc----cchhHHHHHHHHcC-----ccceEE
Q 039491 479 ----RPEASCLI-----MTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDI----ERGVVWEEVIIMLP-----RHINIV 540 (1379)
Q Consensus 479 ----n~~a~IlV-----~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~----~rG~v~eeii~~Lp-----~~vqiI 540 (1379)
-.+.++.| .|++.+++.+.+-.. -.++++||||=.+.|... .|...+.++...|. -++.+|
T Consensus 305 a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi 383 (476)
T PRK08760 305 AIKMLKETKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKELNVPVI 383 (476)
T ss_pred HHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHhCCEEE
Confidence 01123332 355555554432111 135899999999988522 23333444443332 256677
Q ss_pred Eeccc
Q 039491 541 LLSAT 545 (1379)
Q Consensus 541 lLSAT 545 (1379)
++|-.
T Consensus 384 ~lsQL 388 (476)
T PRK08760 384 ALSQL 388 (476)
T ss_pred Eeecc
Confidence 77643
No 454
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=78.71 E-value=4.9 Score=51.00 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=18.4
Q ss_pred HHCCCcEEEEcCCCccHHHHH
Q 039491 412 LENGDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlva 432 (1379)
+..|+.+.+++|+|||||..+
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl 378 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLL 378 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 367999999999999999864
No 455
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=78.60 E-value=6.1 Score=42.86 Aligned_cols=41 Identities=10% Similarity=0.217 Sum_probs=27.7
Q ss_pred CCccEEEEeccCCCCCccchhHHHHHHHHcCc-cceEEEecc
Q 039491 504 RDIEWVIFDEVHYVNDIERGVVWEEVIIMLPR-HINIVLLSA 544 (1379)
Q Consensus 504 ~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~-~vqiIlLSA 544 (1379)
.+-+++|+||...-.|......+.+.+..+.. ..++|+.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 56689999999988886655555555554433 356666654
No 456
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=78.56 E-value=8 Score=46.23 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=22.1
Q ss_pred HHHHHHHHHCCCcEEEEcCCCccHHHHHH
Q 039491 405 QKEAIYYLENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 405 Q~eAI~~L~~g~sVlV~ApTGSGKTlvae 433 (1379)
.+++-.....+..|++.+++|+||+.+|-
T Consensus 12 ~~~~~~~a~~~~pVLI~GE~GtGK~~lAr 40 (329)
T TIGR02974 12 LEQVSRLAPLDRPVLIIGERGTGKELIAA 40 (329)
T ss_pred HHHHHHHhCCCCCEEEECCCCChHHHHHH
Confidence 34444445667889999999999999764
No 457
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=78.50 E-value=15 Score=43.95 Aligned_cols=108 Identities=18% Similarity=0.234 Sum_probs=51.7
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHHh-cC---CcEEEecchHHHHHHHHHHHhc--cccEEEEecCcccCCCCceeeecH
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALATK-HC---TRAVYTAPIKTISNQKYRDFSG--KFDVGLLTGDVSLRPEASCLIMTT 489 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l~-~~---~raIylsPtkaLsnQk~~~~~~--~f~VglltGdv~in~~a~IlV~Tp 489 (1379)
..+++.||.|+|||..+.. ++..+. .. ......++.- ..+.. .+++..+.|... +-+...
T Consensus 37 ~~~Ll~G~~G~GKt~~a~~-la~~l~~~~~~~~~~c~~c~~c-------~~~~~~~~~~~~~~~~~~~------~~~~~~ 102 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIARI-FAKALNCQNGPDGEPCNECESC-------KEINSGSSLDVIEIDAASN------NGVDDI 102 (355)
T ss_pred eEEEEECCCCCCHHHHHHH-HHHHhcCCCCCCCCCCCCCHHH-------HHHhcCCCCCEEEeecccc------CCHHHH
Confidence 3578999999999987643 333332 11 1223333331 11111 114444444211 001111
Q ss_pred HHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEe
Q 039491 490 EILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLL 542 (1379)
Q Consensus 490 EiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlL 542 (1379)
..+.+.+.. .....+-.+||+||+|.+.. .....++..+ |.++.+|+.
T Consensus 103 ~~l~~~~~~-~p~~~~~~vviidea~~l~~----~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 103 REILDNVKY-APSSGKYKVYIIDEVHMLSK----SAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred HHHHHHHhc-CcccCCceEEEEeChhhcCH----HHHHHHHHHHhCCccceeEEEE
Confidence 122222221 22456778999999999864 2344444444 444544544
No 458
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=78.49 E-value=3 Score=52.48 Aligned_cols=47 Identities=17% Similarity=0.093 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHCC--CcEEEEcCCCccHHHHHHHHHHHHHhc-CCcEEE
Q 039491 401 LDNFQKEAIYYLENG--DSVFVAAHTSAGKTVVAEYAFALATKH-CTRAVY 448 (1379)
Q Consensus 401 L~~~Q~eAI~~L~~g--~sVlV~ApTGSGKTlvae~aI~~~l~~-~~raIy 448 (1379)
+.+-|.+.+..+... .-++|++|||||||... ++++..+.. +.+++.
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l~~~~~~iiT 275 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRLNTPERNILT 275 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhccCCCCCcEEE
Confidence 356777777766432 34789999999999864 555555543 333443
No 459
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=78.41 E-value=12 Score=46.80 Aligned_cols=115 Identities=21% Similarity=0.247 Sum_probs=58.3
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHH-HHHhcCC-cEEE-ec-chHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFA-LATKHCT-RAVY-TA-PIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTT 489 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~-~~l~~~~-raIy-ls-PtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~Tp 489 (1379)
.|..+.+++|||+|||+....... ...+++. ++.+ .+ +-+.=+.+..+.|.+.+.+.... +.++
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~------------~~~~ 322 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA------------VKDA 322 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec------------cCCc
Confidence 466788999999999986433333 2234443 3432 22 22333444455555443221111 1112
Q ss_pred HHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcC----ccceEEEecccCC
Q 039491 490 EILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLP----RHINIVLLSATVP 547 (1379)
Q Consensus 490 EiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp----~~vqiIlLSATvp 547 (1379)
..+...+ ..+++.+++++|.+=+... .....+.+.++. +.-.++.|+||..
T Consensus 323 ~Dl~~aL----~~L~d~d~VLIDTaGr~~~---d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 323 ADLRLAL----SELRNKHIVLIDTIGMSQR---DRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred hhHHHHH----HhccCCCeEEeCCCCcChh---hHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 1122222 2356678999999654421 112233333332 2236788999954
No 460
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=78.40 E-value=15 Score=43.53 Aligned_cols=129 Identities=14% Similarity=0.227 Sum_probs=80.9
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecc--hHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAP--IKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRS 494 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsP--tkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL~s 494 (1379)
.+++++-.|+|||...--.......+|.++++.+- .||=+.++.+.|.+...|.++.+...-+| +.|++-.-+..
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~Dp-AaVafDAi~~A-- 217 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADP-AAVAFDAIQAA-- 217 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCc-HHHHHHHHHHH--
Confidence 56789999999998644444445567777777653 58888888999988888888887422111 22322222211
Q ss_pred HHhcCcccCCCccEEEEeccCCCCCccchhHHHHH---HHHcC------ccceEEEecccCCC-hHHHHHHHh
Q 039491 495 MLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEV---IIMLP------RHINIVLLSATVPN-TVEFADWIG 557 (1379)
Q Consensus 495 mL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eei---i~~Lp------~~vqiIlLSATvpN-~~efa~wl~ 557 (1379)
.-+++++|++|=|-++.+. ...++++ ..-+. +|--++.+=||..+ +..-++.+.
T Consensus 218 -------kar~~DvvliDTAGRLhnk--~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~ 281 (340)
T COG0552 218 -------KARGIDVVLIDTAGRLHNK--KNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFN 281 (340)
T ss_pred -------HHcCCCEEEEeCcccccCc--hhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHH
Confidence 2467899999999999754 3334443 22222 23456677899774 344344433
No 461
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=78.28 E-value=2.3 Score=41.80 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=35.2
Q ss_pred HHHHhHcCcccCCCccchhhHHhhhccCCchHHHHHHhhhcC-CCCCCH-HHHHHHhhe
Q 039491 1188 IDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQ-LDDLEP-EEAVAIMSA 1244 (1379)
Q Consensus 1188 ~~VL~~LgyID~~~~v~lKGrvAceI~s~~EL~lTEll~~n~-l~~l~p-~eiaAlLS~ 1244 (1379)
++.|+.||.||+++.+|--||.++++.- +.-++=+|+.+. ++-+++ .-|||+||+
T Consensus 3 ~~~L~~Lgald~~~~lT~lG~~~~~lPl--~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~ 59 (102)
T PF04408_consen 3 LELLKSLGALDENGNLTPLGRKMSQLPL--DPRLAKMLLYGIQFGCLDEALIIAAILSV 59 (102)
T ss_dssp HHHHHHTTSB-TTS-B-HHHHHHTTSSS---HHHHHHHHHHHHCT-HHHHHHHHHHHTS
T ss_pred HHHHHHCCCCCCCCCcCHHHHHHHHCCC--chHhHhHhhhccccccHHHHHHHHHHHcC
Confidence 4689999999999999999999999996 445555554444 444333 345555554
No 462
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=78.20 E-value=4.6 Score=54.51 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=64.9
Q ss_pred HHHHHHhcCCcEEEecchHHHHHHHHHHHhccc---cEEEEecCcc-----------cCCCCceeeecHHHHHHHHhcCc
Q 039491 435 AFALATKHCTRAVYTAPIKTISNQKYRDFSGKF---DVGLLTGDVS-----------LRPEASCLIMTTEILRSMLYRGA 500 (1379)
Q Consensus 435 aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f---~VglltGdv~-----------in~~a~IlV~TpEiL~smL~~~~ 500 (1379)
||..-+.+|+++.|+.|..+=..++...+++.. +|++.+|.+. .+.+.+|||||| .+..|
T Consensus 795 AI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT-----IIEtG- 868 (1139)
T COG1197 795 AILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT-----IIETG- 868 (1139)
T ss_pred HHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee-----eeecC-
Confidence 344445679999999999999999999999988 8999999887 467899999998 22233
Q ss_pred ccCCCccEEEEeccCCCC
Q 039491 501 DIIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 501 ~~l~~v~lVI~DEaH~l~ 518 (1379)
..+.+...+|++-||+++
T Consensus 869 IDIPnANTiIIe~AD~fG 886 (1139)
T COG1197 869 IDIPNANTIIIERADKFG 886 (1139)
T ss_pred cCCCCCceEEEecccccc
Confidence 568899999999999875
No 463
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.18 E-value=14 Score=44.53 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=16.2
Q ss_pred CcEEEEcCCCccHHHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~a 435 (1379)
..+++.||.|+|||..+...
T Consensus 40 ~~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 36889999999999876543
No 464
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=78.06 E-value=5.5 Score=52.79 Aligned_cols=57 Identities=23% Similarity=0.468 Sum_probs=35.0
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae 433 (1379)
....|.+++..+.....+.+.+ .||+. +.-++.-- +...+.+++.+|+|+|||.++-
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v-----~~~~~~~~~~~~~g---~~~~~giLL~GppGtGKT~lak 505 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAV-----EWPLKHPEIFEKMG---IRPPKGVLLFGPPGTGKTLLAK 505 (733)
T ss_pred cccchhhcccHHHHHHHHHHHH-----HhhhhCHHHHHhcC---CCCCceEEEECCCCCCHHHHHH
Confidence 3557888888877777776643 23332 11111110 1234579999999999998753
No 465
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=77.93 E-value=2.5 Score=54.77 Aligned_cols=53 Identities=15% Similarity=0.126 Sum_probs=41.7
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHH--HHHHHHHHHhccc
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKT--ISNQKYRDFSGKF 467 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtka--LsnQk~~~~~~~f 467 (1379)
..+++|.|+||+|||..+...+.+.++.+..++++=|--. |....+...+...
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~g~~viv~DpKgD~~l~~~~~~~~~~~G 230 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRRGDVVIVIDPKGDADLKRRMRAEAKRAG 230 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCchHHHHHHHHHHHHhC
Confidence 4689999999999999988888899988888888888743 6555555554443
No 466
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=77.88 E-value=4.2 Score=54.53 Aligned_cols=140 Identities=22% Similarity=0.310 Sum_probs=80.3
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEE
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVY 448 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIy 448 (1379)
....|..++..+..+..+.+.+-.+. .|| --||.-. |..-+-|+..+|.|+|||+++-+.+......
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PL-lyP---E~f~~~~---itpPrgvL~~GppGTGkTl~araLa~~~s~~------ 326 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPL-LYP---EFFDNFN---ITPPRGVLFHGPPGTGKTLMARALAAACSRG------ 326 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHh-hhh---hHhhhcc---cCCCcceeecCCCCCchhHHHHhhhhhhccc------
Confidence 45689999999988888888653321 122 2222211 3345679999999999998753332222211
Q ss_pred ecchHHHHHHHHHHHhccccEEEEecCcccCCCCcee---eecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhH
Q 039491 449 TAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCL---IMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVV 525 (1379)
Q Consensus 449 lsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~Il---V~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v 525 (1379)
+|+...|. ...++|+ |+..|+=..+|...+. -.....+.|||++=+.- -|...
T Consensus 327 --------~~kisffm--------------rkgaD~lskwvgEaERqlrllFeeA~-k~qPSIIffdeIdGlap-vrSsk 382 (1080)
T KOG0732|consen 327 --------NRKISFFM--------------RKGADCLSKWVGEAERQLRLLFEEAQ-KTQPSIIFFDEIDGLAP-VRSSK 382 (1080)
T ss_pred --------ccccchhh--------------hcCchhhccccCcHHHHHHHHHHHHh-ccCceEEeccccccccc-cccch
Confidence 22222222 2334443 7777765555554322 24567899999994431 22233
Q ss_pred HHH--------HHHH---cCccceEEEeccc
Q 039491 526 WEE--------VIIM---LPRHINIVLLSAT 545 (1379)
Q Consensus 526 ~ee--------ii~~---Lp~~vqiIlLSAT 545 (1379)
+|. ++.. ++..-|++..+||
T Consensus 383 qEqih~SIvSTLLaLmdGldsRgqVvvigAT 413 (1080)
T KOG0732|consen 383 QEQIHASIVSTLLALMDGLDSRGQVVVIGAT 413 (1080)
T ss_pred HHHhhhhHHHHHHHhccCCCCCCceEEEccc
Confidence 332 3333 3567899999999
No 467
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=77.69 E-value=3.6 Score=48.73 Aligned_cols=99 Identities=19% Similarity=0.222 Sum_probs=60.9
Q ss_pred CCHHHHHHHHH-HHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccC
Q 039491 401 LDNFQKEAIYY-LENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLR 479 (1379)
Q Consensus 401 L~~~Q~eAI~~-L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in 479 (1379)
+++.|..-+.. ++.+++++++++||||||.. +.|+...+....|++.+=-+.++.-- ... -+.+.+......
T Consensus 128 ~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~~~rivtIEdt~E~~~~-~~n-----~~~l~~r~~~~~ 200 (312)
T COG0630 128 ISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPPEERIVTIEDTPELKLP-HEN-----WVQLVTREGESG 200 (312)
T ss_pred CCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCchhcEEEEeccccccCC-CCC-----EEEEEecCCCCC
Confidence 55666655544 58899999999999999974 56777777888888888776655321 111 233333322111
Q ss_pred CCCceeeecHHHHHHHHhcCcccCCCccEEEEeccC
Q 039491 480 PEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVH 515 (1379)
Q Consensus 480 ~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH 515 (1379)
..=|.....|...|+. +-+++|++|++
T Consensus 201 ---~~~v~~~dll~aalR~------rPd~IivgEvr 227 (312)
T COG0630 201 ---SSEVSLEDLLRAALRQ------RPDYIIVGELR 227 (312)
T ss_pred ---ccccCHHHHHHHHHhc------CCCeEEEeeee
Confidence 1112223344444433 45699999998
No 468
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=77.56 E-value=2.8 Score=49.75 Aligned_cols=84 Identities=21% Similarity=0.286 Sum_probs=53.7
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecH---H-
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTT---E- 490 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~Tp---E- 490 (1379)
|+-+-+.+|+|+|||..++.+++.+.+.+..++|+-|-.+|-....+.+---. .+++|..| |
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~lGvdl--------------~rllv~~P~~~E~ 118 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESLGVDL--------------DRLLVVQPDTGEQ 118 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHTT--G--------------GGEEEEE-SSHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhcCccc--------------cceEEecCCcHHH
Confidence 66778999999999999999999988889999999998888766555543211 12444433 2
Q ss_pred ---HHHHHHhcCcccCCCccEEEEeccCCC
Q 039491 491 ---ILRSMLYRGADIIRDIEWVIFDEVHYV 517 (1379)
Q Consensus 491 ---iL~smL~~~~~~l~~v~lVI~DEaH~l 517 (1379)
++..++..+ .+++||+|=+-.+
T Consensus 119 al~~~e~lirsg-----~~~lVVvDSv~al 143 (322)
T PF00154_consen 119 ALWIAEQLIRSG-----AVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHHHHHHHTT-----SESEEEEE-CTT-
T ss_pred HHHHHHHHhhcc-----cccEEEEecCccc
Confidence 222333322 4679999987765
No 469
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=76.55 E-value=11 Score=50.76 Aligned_cols=34 Identities=21% Similarity=0.134 Sum_probs=21.9
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecc
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAP 451 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsP 451 (1379)
++++++|||+|||.+|- +++..+-.+...++...
T Consensus 598 ~~lf~Gp~GvGKT~lA~-~La~~l~~~~~~~~~~d 631 (852)
T TIGR03345 598 VFLLVGPSGVGKTETAL-ALAELLYGGEQNLITIN 631 (852)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHHhCCCcceEEEe
Confidence 47999999999998764 34444533333444443
No 470
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=76.53 E-value=2.9 Score=53.81 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=40.0
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHH--HHHHHHHHHhc
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKT--ISNQKYRDFSG 465 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtka--LsnQk~~~~~~ 465 (1379)
..+.+|.++||+|||..+.+.+.+.++.+..++++=|-.. |..-.+...+.
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~g~~vi~fDpkgD~el~~~~~~~~~~ 232 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRRGDVVIVFDPKGDADLLKRMYAEAKR 232 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999988753 34444444433
No 471
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=76.49 E-value=6.1 Score=47.41 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=33.6
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHC-CCcEEEEcCCCccHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLEN-GDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~-g~sVlV~ApTGSGKTlva 432 (1379)
.+-.|.++....+-.+-+++.+ ..|.. |.-|| .+.+ =+.|+..+|.|+|||+.|
T Consensus 207 p~ikW~DIagl~~AK~lL~EAV-----vlPi~mPe~F~-----GirrPWkgvLm~GPPGTGKTlLA 262 (491)
T KOG0738|consen 207 PNIKWDDIAGLHEAKKLLKEAV-----VLPIWMPEFFK-----GIRRPWKGVLMVGPPGTGKTLLA 262 (491)
T ss_pred CCcChHhhcchHHHHHHHHHHH-----hhhhhhHHHHh-----hcccccceeeeeCCCCCcHHHHH
Confidence 3468999888777666666633 22322 11121 1211 167999999999999853
No 472
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=76.34 E-value=14 Score=46.70 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=35.3
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae 433 (1379)
...+|.++...+.....+.+.+..+. .+..|+... ....+++++.+|+|+|||..+-
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~-----~~~~~~~~g---~~~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLK-----NPSKFTKLG---AKIPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHH-----CHHHHHhcC---CCCCCcEEEECCCCCCHHHHHH
Confidence 45679998888877777666432211 011222211 1223579999999999998753
No 473
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=76.32 E-value=3.7 Score=47.75 Aligned_cols=42 Identities=24% Similarity=0.319 Sum_probs=26.4
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHh-cCCcEEEe---------cchHHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATK-HCTRAVYT---------APIKTISNQK 459 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~-~~~raIyl---------sPtkaLsnQk 459 (1379)
=|+|.+|||||||... -+|...+. +..+-|++ ...|.|.+|.
T Consensus 127 LILVTGpTGSGKSTTl-AamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QR 178 (353)
T COG2805 127 LILVTGPTGSGKSTTL-AAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQR 178 (353)
T ss_pred eEEEeCCCCCcHHHHH-HHHHHHHhccCCcceEEecCchHhhhcchHhhhhHH
Confidence 5899999999999752 24555553 33333333 3457777773
No 474
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=76.16 E-value=1.6 Score=53.12 Aligned_cols=54 Identities=20% Similarity=0.002 Sum_probs=39.3
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEEE
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLL 472 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~Vgll 472 (1379)
+++|.|+||||||..+.++-+. .....+|++-|--++.....+..+... +|-++
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll--~~~~s~vv~D~Kge~~~~t~~~r~~~G~~V~v~ 55 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLL--TWPGSVVVLDPKGENFELTSEHRRALGRKVFVF 55 (384)
T ss_pred CeeEecCCCCCCccEEEccchh--cCCCCEEEEccchhHHHHHHHHHHHcCCeEEEE
Confidence 4799999999999876555433 345789999999999877666555543 44444
No 475
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=76.15 E-value=1.6 Score=50.84 Aligned_cols=20 Identities=25% Similarity=0.512 Sum_probs=16.8
Q ss_pred CCCcEEEEcCCCccHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae 433 (1379)
...|+++.+|||||||+.|.
T Consensus 96 ~KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eeccEEEECCCCCcHHHHHH
Confidence 45689999999999998653
No 476
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=75.99 E-value=12 Score=45.40 Aligned_cols=105 Identities=14% Similarity=0.212 Sum_probs=54.0
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHH--hcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALAT--KHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEIL 492 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l--~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL 492 (1379)
.+.+-+.++.|.|||...-+. ...+ +++.|+ +..+-..+.++++.+.- |. .+- -+.+.
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f-~~~lp~~~k~R~----HFh~Fm~~vh~~l~~~~------~~------~~~---l~~va 121 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLF-YDSLPIKRKRRV----HFHEFMLDVHSRLHQLR------GQ------DDP---LPQVA 121 (362)
T ss_pred CceEEEECCCCCchhHHHHHH-HHhCCccccccc----cccHHHHHHHHHHHHHh------CC------Ccc---HHHHH
Confidence 457899999999999863322 1222 122221 22344555555555421 11 111 11222
Q ss_pred HHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHH-cCccceEEEecccCC
Q 039491 493 RSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIM-LPRHINIVLLSATVP 547 (1379)
Q Consensus 493 ~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~-Lp~~vqiIlLSATvp 547 (1379)
.. ..++..++.|||.|.- |..-...+..++.. +...+-+|.-|-+.|
T Consensus 122 ~~-------l~~~~~lLcfDEF~V~-DiaDAmil~rLf~~l~~~gvvlVaTSN~~P 169 (362)
T PF03969_consen 122 DE-------LAKESRLLCFDEFQVT-DIADAMILKRLFEALFKRGVVLVATSNRPP 169 (362)
T ss_pred HH-------HHhcCCEEEEeeeecc-chhHHHHHHHHHHHHHHCCCEEEecCCCCh
Confidence 22 2356679999999853 33224444444433 345566666666654
No 477
>PRK13764 ATPase; Provisional
Probab=75.52 E-value=3.5 Score=52.88 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=24.7
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEE
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAV 447 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raI 447 (1379)
..+.+++|++|||||||..+ .+++..+....+.+
T Consensus 255 ~~~~~ILIsG~TGSGKTTll-~AL~~~i~~~~riV 288 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFA-QALAEFYADMGKIV 288 (602)
T ss_pred hcCCEEEEECCCCCCHHHHH-HHHHHHHhhCCCEE
Confidence 45678999999999999864 55555555444554
No 478
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=75.52 E-value=5 Score=43.45 Aligned_cols=125 Identities=22% Similarity=0.184 Sum_probs=56.4
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEEEecCcccCCCCceeeec-----HH
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVSLRPEASCLIMT-----TE 490 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~in~~a~IlV~T-----pE 490 (1379)
-|.|--..|=|||.+|.=-.++++.++.||+++-=.|--...=-..+-+.+ ++.+...+...- .-+. ..
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l~~~~~~~~g~~f~-----~~~~~~~~~~~ 79 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKLPNVEIERFGKGFV-----WRMNEEEEDRA 79 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGGT--EEEE--TT---------GGGHHHHHH
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhCCeEEEEEcCCccc-----ccCCCcHHHHH
Confidence 366777889999999887788888999999999777761111111222222 343332222110 0011 12
Q ss_pred HHHHHHhcCccc--CCCccEEEEeccCCCCCccchhHHHHHHHH---cCccceEEEecccCC
Q 039491 491 ILRSMLYRGADI--IRDIEWVIFDEVHYVNDIERGVVWEEVIIM---LPRHINIVLLSATVP 547 (1379)
Q Consensus 491 iL~smL~~~~~~--l~~v~lVI~DEaH~l~d~~rG~v~eeii~~---Lp~~vqiIlLSATvp 547 (1379)
.....+...... -..+++||+||+=+..+.+. ...++++.. -|++.-+|+---..|
T Consensus 80 ~~~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gl-l~~~~v~~~l~~rp~~~evVlTGR~~~ 140 (172)
T PF02572_consen 80 AAREGLEEAKEAISSGEYDLVILDEINYAVDYGL-LSEEEVLDLLENRPESLEVVLTGRNAP 140 (172)
T ss_dssp HHHHHHHHHHHHTT-TT-SEEEEETHHHHHHTTS-S-HHHHHHHHHTS-TT-EEEEE-SS--
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEcchHHHhHCCC-ccHHHHHHHHHcCCCCeEEEEECCCCC
Confidence 222222222222 35799999999987664321 223444443 355555554433343
No 479
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=75.41 E-value=3.6 Score=44.49 Aligned_cols=50 Identities=22% Similarity=0.263 Sum_probs=30.6
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHh----------cCCcEEEecchHHHHHHHHHHHh
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATK----------HCTRAVYTAPIKTISNQKYRDFS 464 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~----------~~~raIylsPtkaLsnQk~~~~~ 464 (1379)
.|.-+++.|++|+|||..+...++.... .+.+++|+..--. ..+..+++.
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~ 90 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLR 90 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHH
Confidence 5778999999999999876555554443 4568888865433 234444444
No 480
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=75.41 E-value=7.6 Score=49.82 Aligned_cols=107 Identities=16% Similarity=0.276 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHH--------HCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc---cE
Q 039491 401 LDNFQKEAIYYL--------ENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF---DV 469 (1379)
Q Consensus 401 L~~~Q~eAI~~L--------~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f---~V 469 (1379)
+...-++.++.| .+|+-+..++|+|-|||-++ -.| ++.+.+.| .|
T Consensus 416 m~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~-kSI-----------------------A~ALnRkFfRfSv 471 (906)
T KOG2004|consen 416 MEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIA-KSI-----------------------ARALNRKFFRFSV 471 (906)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHH-HHH-----------------------HHHhCCceEEEec
Confidence 567777877776 24566788999999999764 123 34444444 66
Q ss_pred EEEecCcccCCCCceee-ecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcC
Q 039491 470 GLLTGDVSLRPEASCLI-MTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLP 534 (1379)
Q Consensus 470 glltGdv~in~~a~IlV-~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp 534 (1379)
|-++.-..|.....-.| +-|+++...|.+-.. .--+|.|||++.+.....|.--..++..|.
T Consensus 472 GG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t---~NPliLiDEvDKlG~g~qGDPasALLElLD 534 (906)
T KOG2004|consen 472 GGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKT---ENPLILIDEVDKLGSGHQGDPASALLELLD 534 (906)
T ss_pred cccccHHhhcccceeeeccCChHHHHHHHhhCC---CCceEEeehhhhhCCCCCCChHHHHHHhcC
Confidence 66665445554433333 568999888875211 223799999999986566776666666653
No 481
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=75.31 E-value=6.1 Score=45.54 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=22.6
Q ss_pred HHHHHHHCCCcEEEEcCCCccHHHHHHH
Q 039491 407 EAIYYLENGDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 407 eAI~~L~~g~sVlV~ApTGSGKTlvae~ 434 (1379)
+++..+..|.++++.+|+|+|||.++..
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHH
Confidence 3445567889999999999999998753
No 482
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=75.20 E-value=3.9 Score=47.06 Aligned_cols=104 Identities=14% Similarity=0.226 Sum_probs=52.8
Q ss_pred HHHHHHCC-----CcEEEEcCCCccHHHHHHHHHHHHH-h-----cCCcEEEecchHHHHHHHHHHHhccccEEEEecCc
Q 039491 408 AIYYLENG-----DSVFVAAHTSAGKTVVAEYAFALAT-K-----HCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDV 476 (1379)
Q Consensus 408 AI~~L~~g-----~sVlV~ApTGSGKTlvae~aI~~~l-~-----~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv 476 (1379)
.++.++.| .-+=++++.|+|||-.+.-..+... . .+.+++|+.-......+...++.+.++.. .+
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~---~~- 101 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLD---PE- 101 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS----HH-
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccc---cc-
Confidence 45555544 3345899999999976544433332 1 25789998654444444444444433100 00
Q ss_pred ccCCCCcee---eecHHHHHHHHhcCccc--CCCccEEEEeccCCC
Q 039491 477 SLRPEASCL---IMTTEILRSMLYRGADI--IRDIEWVIFDEVHYV 517 (1379)
Q Consensus 477 ~in~~a~Il---V~TpEiL~smL~~~~~~--l~~v~lVI~DEaH~l 517 (1379)
.+- .+|. +.+.+-+...+..-... -.++++||+|-+=.+
T Consensus 102 ~~l--~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaal 145 (256)
T PF08423_consen 102 EIL--DNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAAL 145 (256)
T ss_dssp HHH--HTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHH
T ss_pred hhh--hceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHH
Confidence 000 1121 23444444444321111 146999999997654
No 483
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=74.96 E-value=3.5 Score=45.47 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=22.0
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHh-c-CCcEEEecc
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATK-H-CTRAVYTAP 451 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~-~-~~raIylsP 451 (1379)
-+++++|||||||... .+++..+. + +.+++.+--
T Consensus 3 lilI~GptGSGKTTll-~~ll~~~~~~~~~~i~t~e~ 38 (198)
T cd01131 3 LVLVTGPTGSGKSTTL-AAMIDYINKNKTHHILTIED 38 (198)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhhhcCCcEEEEEcC
Confidence 4789999999999875 44444443 2 344454433
No 484
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=74.47 E-value=31 Score=41.44 Aligned_cols=126 Identities=13% Similarity=0.116 Sum_probs=63.6
Q ss_pred HHHHHHHHHH----HCCC---cEEEEcCCCccHHHHHHHHHHHHHh--c--CCcEEEecchHHHHHHHHHHHhccc--cE
Q 039491 403 NFQKEAIYYL----ENGD---SVFVAAHTSAGKTVVAEYAFALATK--H--CTRAVYTAPIKTISNQKYRDFSGKF--DV 469 (1379)
Q Consensus 403 ~~Q~eAI~~L----~~g~---sVlV~ApTGSGKTlvae~aI~~~l~--~--~~raIylsPtkaLsnQk~~~~~~~f--~V 469 (1379)
|||..+...+ .+|+ ..++.+|.|.||+..|. ++++++- + +....=.|+. .+.+...- ++
T Consensus 5 PWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~-~~A~~LlC~~~~~~~~Cg~C~s-------C~~~~~g~HPD~ 76 (334)
T PRK07993 5 PWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIY-ALSRWLMCQQPQGHKSCGHCRG-------CQLMQAGTHPDY 76 (334)
T ss_pred CCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHH-HHHHHHcCCCCCCCCCCCCCHH-------HHHHHcCCCCCE
Confidence 4455544443 4443 67899999999998764 3444431 1 1111111111 12222222 55
Q ss_pred EEEecCcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEecc
Q 039491 470 GLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLLSA 544 (1379)
Q Consensus 470 glltGdv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlLSA 544 (1379)
-.+..+.. ...|-|-....+...++.. ......+++|||+||+|+. .....+++.| |+++-+|++|.
T Consensus 77 ~~i~p~~~---~~~I~idqiR~l~~~~~~~-~~~g~~kV~iI~~ae~m~~----~AaNaLLKtLEEPp~~t~fiL~t~ 146 (334)
T PRK07993 77 YTLTPEKG---KSSLGVDAVREVTEKLYEH-ARLGGAKVVWLPDAALLTD----AAANALLKTLEEPPENTWFFLACR 146 (334)
T ss_pred EEEecccc---cccCCHHHHHHHHHHHhhc-cccCCceEEEEcchHhhCH----HHHHHHHHHhcCCCCCeEEEEEEC
Confidence 55543211 1223333333333333332 2346789999999999984 3345555555 33455555543
No 485
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.03 E-value=20 Score=46.45 Aligned_cols=39 Identities=21% Similarity=0.312 Sum_probs=24.4
Q ss_pred ccCCCccEEEEeccCCCCCccchhHHHHHHHH---cCccceEEEec
Q 039491 501 DIIRDIEWVIFDEVHYVNDIERGVVWEEVIIM---LPRHINIVLLS 543 (1379)
Q Consensus 501 ~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~---Lp~~vqiIlLS 543 (1379)
..+.+.++|||||+|.+... .+..++.. -|.++.+|+.+
T Consensus 117 P~~~~~KVvIIdea~~Ls~~----a~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 117 PQIGKYKIYIIDEVHMLSQA----AFNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred cccCCcEEEEEECcccCCHH----HHHHHHHHHhCCCCCeEEEEEe
Confidence 35678899999999999742 33444433 34555545433
No 486
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=73.99 E-value=4.7 Score=48.37 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHH-HCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHH
Q 039491 401 LDNFQKEAIYYL-ENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTIS 456 (1379)
Q Consensus 401 L~~~Q~eAI~~L-~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLs 456 (1379)
+++.+.+.+..+ ..+.+++|+++||||||... .++...+....+++++--+.+|.
T Consensus 163 ~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i~~~~riv~iEd~~El~ 218 (340)
T TIGR03819 163 FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALVAPDERIVLVEDAAELR 218 (340)
T ss_pred CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccCCCCCcEEEECCcceec
Confidence 456677766665 55679999999999999754 34444556667778777776663
No 487
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=73.93 E-value=6.7 Score=48.33 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCccHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae 433 (1379)
..++++.+|||+|||.+|-
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr 126 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQ 126 (412)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4689999999999998753
No 488
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=73.85 E-value=17 Score=43.37 Aligned_cols=133 Identities=13% Similarity=0.061 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHH--CC---CcEEEEcCCCccHHHHHHHHHHHHHh-c---CCcEEEecchHHHHHHHHHHHhccc--cEE
Q 039491 402 DNFQKEAIYYLE--NG---DSVFVAAHTSAGKTVVAEYAFALATK-H---CTRAVYTAPIKTISNQKYRDFSGKF--DVG 470 (1379)
Q Consensus 402 ~~~Q~eAI~~L~--~g---~sVlV~ApTGSGKTlvae~aI~~~l~-~---~~raIylsPtkaLsnQk~~~~~~~f--~Vg 470 (1379)
+|||..+...+. .+ ...++.+|.|.|||..|.......+- . +....-.++. .+.+.... ++-
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~-------C~~~~~~~HpD~~ 75 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMS-------CHLFGQGSHPDFY 75 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHH-------HHHHhcCCCCCEE
Confidence 356666666653 23 36889999999999876544333221 1 0111111221 12222222 444
Q ss_pred EEecCcc--cCCC--CceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEec
Q 039491 471 LLTGDVS--LRPE--ASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLS 543 (1379)
Q Consensus 471 lltGdv~--in~~--a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLS 543 (1379)
.+.-... -... ..|-|-....+.+.++.. ......+++|+|++|.+.... ...+..++...+.++.+|+.|
T Consensus 76 ~~~p~~~~~~~g~~~~~I~id~iR~l~~~~~~~-p~~~~~kV~iiEp~~~Ld~~a-~naLLk~LEep~~~~~~Ilvt 150 (325)
T PRK08699 76 EITPLSDEPENGRKLLQIKIDAVREIIDNVYLT-SVRGGLRVILIHPAESMNLQA-ANSLLKVLEEPPPQVVFLLVS 150 (325)
T ss_pred EEecccccccccccCCCcCHHHHHHHHHHHhhC-cccCCceEEEEechhhCCHHH-HHHHHHHHHhCcCCCEEEEEe
Confidence 4432110 0000 123333333333333322 234678899999999997533 223333444445555555543
No 489
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=73.80 E-value=10 Score=47.79 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=36.3
Q ss_pred cccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHH
Q 039491 368 QQKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 368 ~~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlva 432 (1379)
.....|.+.+........+.+.+ .+|+. +.-|+.. -+.....+++.+|.|+|||+.|
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v-----~~~~~~~e~~~~~---~~~~~~giLl~GpPGtGKT~lA 293 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAI-----ETPLKRPELFRKL---GLRPPKGVLLYGPPGTGKTLLA 293 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHH-----HhHhhChHHHHhc---CCCCCCeeEEECCCCCCHHHHH
Confidence 35678999887666666666643 24433 2333431 1233457999999999999864
No 490
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=73.76 E-value=1.3 Score=47.71 Aligned_cols=41 Identities=29% Similarity=0.249 Sum_probs=26.9
Q ss_pred CCCceeeecHHHHHHHHhcCcc--cCCCccEEEEeccCCCCCc
Q 039491 480 PEASCLIMTTEILRSMLYRGAD--IIRDIEWVIFDEVHYVNDI 520 (1379)
Q Consensus 480 ~~a~IlV~TpEiL~smL~~~~~--~l~~v~lVI~DEaH~l~d~ 520 (1379)
..++|+|++...|.+-..+... ...+-.+|||||||.+.+.
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 5688999998877654333221 2345579999999998754
No 491
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=73.46 E-value=9.6 Score=49.79 Aligned_cols=84 Identities=17% Similarity=0.118 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcC----CcEEEecchHHHHHHHHHHHhccccEEEEecC
Q 039491 400 ELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHC----TRAVYTAPIKTISNQKYRDFSGKFDVGLLTGD 475 (1379)
Q Consensus 400 eL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~----~raIylsPtkaLsnQk~~~~~~~f~VglltGd 475 (1379)
.|++-|++|+.+. ...++|.|..|||||.+...-|+..+..+ .+++.++=|+-.+.+.-.++.+....
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~~------ 73 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLGL------ 73 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhCc------
Confidence 4789999999876 45789999999999999888888887654 35666666666677777777775411
Q ss_pred cccCCCCc-eeeecHHHHHHH
Q 039491 476 VSLRPEAS-CLIMTTEILRSM 495 (1379)
Q Consensus 476 v~in~~a~-IlV~TpEiL~sm 495 (1379)
+... +.|+|...+...
T Consensus 74 ----~~~~~~~v~TfHs~~~~ 90 (655)
T COG0210 74 ----PAAEGLTVGTFHSFALR 90 (655)
T ss_pred ----ccccCcEEeeHHHHHHH
Confidence 1111 778888766443
No 492
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=73.44 E-value=3.5 Score=54.78 Aligned_cols=40 Identities=25% Similarity=0.220 Sum_probs=34.4
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHHhcC-CcEEEecchHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALATKHC-TRAVYTAPIKTI 455 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l~~~-~raIylsPtkaL 455 (1379)
.+.+|++|||||||+...+.++++.+.+ .+++++=+-+..
T Consensus 437 ghT~I~G~tGaGKTvLl~~llaq~~k~~~~~iv~fDk~~g~ 477 (796)
T COG3451 437 GHTLIIGPTGAGKTVLLSFLLAQALKYGNPQIVAFDKDNGA 477 (796)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEcCCCcH
Confidence 3899999999999999888999998887 888888776543
No 493
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=73.28 E-value=3.4 Score=50.82 Aligned_cols=43 Identities=19% Similarity=0.181 Sum_probs=32.9
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTIS 456 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLs 456 (1379)
..++++|.|+||||||.+.-..+......+.++|++=|.-++.
T Consensus 41 ~~~h~~i~g~tGsGKt~~i~~l~~~~~~~~~~~vi~D~kg~~~ 83 (410)
T cd01127 41 EEAHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGGFV 83 (410)
T ss_pred hhccEEEEcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcchh
Confidence 3568999999999999864444555556788899999976654
No 494
>PHA00012 I assembly protein
Probab=72.92 E-value=27 Score=41.51 Aligned_cols=34 Identities=21% Similarity=0.070 Sum_probs=27.0
Q ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecc
Q 039491 418 VFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAP 451 (1379)
Q Consensus 418 VlV~ApTGSGKTlvae~aI~~~l~~~~raIylsP 451 (1379)
-+|.+-.|||||+.+.--|..+++.|.+++-=.|
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~Gr~VaTNid 37 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKGCIVATNLN 37 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcCCEEEeCCc
Confidence 4789999999999888788888888875544444
No 495
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=72.90 E-value=19 Score=45.01 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=17.6
Q ss_pred CcEEEEcCCCccHHHHHHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFAL 438 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~ 438 (1379)
...++.||.|+|||.++......
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~lAk~ 62 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARIFAKA 62 (451)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 45789999999999987544333
No 496
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=72.27 E-value=4.3 Score=51.40 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=0.0
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhc-CCcEEEec
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKH-CTRAVYTA 450 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~-~~raIyls 450 (1379)
.|..++|.+++|+|||+.+.-.+...+.+ +.+++|++
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis 67 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVT 67 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEE
No 497
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=72.25 E-value=6.2 Score=47.72 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=20.8
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALAT 440 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l 440 (1379)
.+..++|++|||||||... ++++..+
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 5678999999999999864 5666555
No 498
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.24 E-value=21 Score=45.04 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=14.8
Q ss_pred cCCCccEEEEeccCCCCC
Q 039491 502 IIRDIEWVIFDEVHYVND 519 (1379)
Q Consensus 502 ~l~~v~lVI~DEaH~l~d 519 (1379)
...+..++|+||||.+..
T Consensus 116 ~~~~~KVvIIDEad~Lt~ 133 (486)
T PRK14953 116 IKGKYKVYIIDEAHMLTK 133 (486)
T ss_pred ccCCeeEEEEEChhhcCH
Confidence 356788999999999864
No 499
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=72.02 E-value=13 Score=45.45 Aligned_cols=114 Identities=20% Similarity=0.295 Sum_probs=61.9
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc--cEEEEecCcccCCCCceeeecHH
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF--DVGLLTGDVSLRPEASCLIMTTE 490 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f--~VglltGdv~in~~a~IlV~TpE 490 (1379)
-.|.+|++.++||+||+++|...-....+....-++.+.--++++.-..- . .| .-|.+||...-++ +
T Consensus 99 p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~-e-LFG~~kGaftGa~~~k~---------G 167 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEA-E-LFGHEKGAFTGAQGGKA---------G 167 (403)
T ss_pred CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHH-H-HhccccceeecccCCcC---------c
Confidence 45889999999999999986433222222122234444444444332221 1 56 6678888433221 1
Q ss_pred HHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc------------CccceEEEecccCCChH
Q 039491 491 ILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML------------PRHINIVLLSATVPNTV 550 (1379)
Q Consensus 491 iL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L------------p~~vqiIlLSATvpN~~ 550 (1379)
.+ ...+=+.+.+||+|.+--. .-+.++..+ +..+.+-+.+||-.|..
T Consensus 168 lf---------e~A~GGtLfLDEI~~LP~~----~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~ 226 (403)
T COG1221 168 LF---------EQANGGTLFLDEIHRLPPE----GQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLE 226 (403)
T ss_pred hh---------eecCCCEEehhhhhhCCHh----HHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHH
Confidence 11 1223468999999988632 223333322 23345566677765554
No 500
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=72.00 E-value=2.1 Score=49.14 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=18.5
Q ss_pred HHCCCcEEEEcCCCccHHHHH
Q 039491 412 LENGDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlva 432 (1379)
+..|+.+++.++.|+|||..+
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLl 33 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLL 33 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 467999999999999999754
Done!