Query 039491
Match_columns 1379
No_of_seqs 669 out of 3588
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 17:29:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039491.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039491hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a4z_A Antiviral helicase SKI2 100.0 2E-149 8E-154 1468.0 72.4 969 368-1376 7-997 (997)
2 2xgj_A ATP-dependent RNA helic 100.0 5E-147 2E-151 1445.6 82.7 920 386-1376 71-1010(1010)
3 3l9o_A ATP-dependent RNA helic 100.0 9E-149 3E-153 1473.9 66.0 914 392-1376 176-1108(1108)
4 4f92_B U5 small nuclear ribonu 100.0 2.3E-53 8E-58 580.4 35.6 408 398-891 76-525 (1724)
5 4f92_B U5 small nuclear ribonu 100.0 5.1E-52 1.8E-56 567.2 32.2 405 398-891 923-1360(1724)
6 2zj8_A DNA helicase, putative 100.0 1.2E-49 4E-54 511.0 43.3 426 372-895 2-447 (720)
7 2va8_A SSO2462, SKI2-type heli 100.0 8.9E-49 3.1E-53 502.4 42.5 434 369-893 6-467 (715)
8 2p6r_A Afuhel308 helicase; pro 100.0 2.7E-49 9.2E-54 506.2 32.8 424 372-895 2-448 (702)
9 2db3_A ATP-dependent RNA helic 100.0 9.7E-44 3.3E-48 430.1 41.6 329 369-841 54-407 (434)
10 1s2m_A Putative ATP-dependent 100.0 3.8E-42 1.3E-46 408.9 38.3 340 369-853 19-375 (400)
11 2j0s_A ATP-dependent RNA helic 100.0 2.8E-42 9.5E-47 411.8 34.7 338 370-851 36-391 (410)
12 2i4i_A ATP-dependent RNA helic 100.0 3.9E-42 1.3E-46 410.7 35.5 330 369-841 13-383 (417)
13 3pey_A ATP-dependent RNA helic 100.0 1.5E-41 5.1E-46 401.1 38.3 333 370-841 4-356 (395)
14 3fht_A ATP-dependent RNA helic 100.0 1.6E-41 5.6E-46 403.9 37.3 336 367-841 21-379 (412)
15 1xti_A Probable ATP-dependent 100.0 1.6E-41 5.4E-46 401.6 36.2 329 370-841 7-357 (391)
16 3eiq_A Eukaryotic initiation f 100.0 5.1E-42 1.7E-46 408.9 31.5 339 369-851 38-395 (414)
17 1hv8_A Putative ATP-dependent 100.0 9.7E-41 3.3E-45 390.1 36.4 334 370-851 5-353 (367)
18 3i5x_A ATP-dependent RNA helic 100.0 5.2E-41 1.8E-45 418.4 34.5 338 378-853 79-459 (563)
19 3sqw_A ATP-dependent RNA helic 100.0 2E-40 6.8E-45 415.2 34.2 340 378-854 28-409 (579)
20 3fmp_B ATP-dependent RNA helic 100.0 5.9E-42 2E-46 418.8 17.9 335 368-841 89-446 (479)
21 2z0m_A 337AA long hypothetical 100.0 7.9E-40 2.7E-44 378.4 33.5 316 380-851 3-330 (337)
22 1fuu_A Yeast initiation factor 100.0 2.1E-41 7.2E-46 400.5 17.2 330 370-841 20-366 (394)
23 1oyw_A RECQ helicase, ATP-depe 100.0 1.6E-39 5.6E-44 402.0 31.1 332 372-854 3-354 (523)
24 2v1x_A ATP-dependent DNA helic 100.0 3.6E-39 1.2E-43 403.6 33.9 338 369-853 17-384 (591)
25 3oiy_A Reverse gyrase helicase 100.0 6.7E-39 2.3E-43 384.2 23.9 296 394-838 15-362 (414)
26 3fho_A ATP-dependent RNA helic 100.0 6.7E-39 2.3E-43 395.4 20.4 328 397-855 137-486 (508)
27 4a2p_A RIG-I, retinoic acid in 100.0 3.8E-37 1.3E-41 380.9 26.8 393 397-841 4-508 (556)
28 3tbk_A RIG-I helicase domain; 100.0 1.8E-36 6.1E-41 374.1 27.4 380 398-841 2-507 (555)
29 1wp9_A ATP-dependent RNA helic 100.0 1.9E-35 6.3E-40 356.1 31.9 392 398-842 7-476 (494)
30 2ykg_A Probable ATP-dependent 100.0 6.8E-36 2.3E-40 381.3 24.3 402 396-841 8-516 (696)
31 4ddu_A Reverse gyrase; topoiso 100.0 1.4E-35 4.8E-40 393.0 25.2 301 395-840 73-491 (1104)
32 4gl2_A Interferon-induced heli 100.0 4.2E-35 1.4E-39 374.2 26.3 389 397-841 4-519 (699)
33 4a2q_A RIG-I, retinoic acid in 100.0 7.8E-35 2.7E-39 377.5 27.5 393 399-841 247-749 (797)
34 3rc3_A ATP-dependent RNA helic 100.0 3.6E-34 1.2E-38 361.4 28.3 296 412-861 152-462 (677)
35 1gm5_A RECG; helicase, replica 100.0 2.4E-34 8.2E-39 368.0 19.6 301 396-840 364-696 (780)
36 2oca_A DAR protein, ATP-depend 100.0 3E-33 1E-37 344.3 28.1 314 398-829 111-445 (510)
37 2fwr_A DNA repair protein RAD2 100.0 5.3E-34 1.8E-38 347.7 20.4 353 397-844 90-457 (472)
38 2eyq_A TRCF, transcription-rep 100.0 9.6E-33 3.3E-37 368.0 34.0 303 394-841 597-922 (1151)
39 4a2w_A RIG-I, retinoic acid in 100.0 1.1E-33 3.8E-38 371.5 24.5 389 398-841 246-749 (936)
40 2xau_A PRE-mRNA-splicing facto 100.0 3.1E-33 1.1E-37 359.4 26.8 419 370-934 71-519 (773)
41 1gku_B Reverse gyrase, TOP-RG; 100.0 5.3E-34 1.8E-38 377.9 19.3 268 393-805 50-351 (1054)
42 2jlq_A Serine protease subunit 100.0 6.3E-33 2.2E-37 337.3 16.8 285 401-840 5-310 (451)
43 2whx_A Serine protease/ntpase/ 100.0 1E-31 3.4E-36 337.6 19.9 285 401-839 172-476 (618)
44 3o8b_A HCV NS3 protease/helica 100.0 1.3E-31 4.3E-36 335.0 18.7 280 401-841 218-514 (666)
45 1tf5_A Preprotein translocase 100.0 6.9E-31 2.4E-35 330.7 24.2 349 395-841 78-545 (844)
46 2v6i_A RNA helicase; membrane, 100.0 1.2E-30 4E-35 315.6 21.8 270 414-840 1-290 (431)
47 3h1t_A Type I site-specific re 100.0 6.2E-30 2.1E-34 320.8 26.9 339 398-828 176-545 (590)
48 1yks_A Genome polyprotein [con 100.0 1.9E-30 6.6E-35 314.5 20.7 273 412-839 5-297 (440)
49 2wv9_A Flavivirin protease NS2 100.0 8.9E-31 3.1E-35 331.2 17.7 285 400-839 215-531 (673)
50 2z83_A Helicase/nucleoside tri 100.0 8.1E-31 2.8E-35 319.4 16.2 279 409-841 15-313 (459)
51 2fsf_A Preprotein translocase 100.0 2.6E-29 8.9E-34 315.5 28.3 351 396-841 70-583 (853)
52 1nkt_A Preprotein translocase 100.0 1.2E-28 4.2E-33 309.6 28.3 355 395-841 106-617 (922)
53 3dmq_A RNA polymerase-associat 100.0 2.6E-28 8.9E-33 321.3 24.9 381 397-855 150-628 (968)
54 1z63_A Helicase of the SNF2/RA 99.9 2E-26 6.8E-31 282.9 30.7 378 397-855 34-466 (500)
55 1vec_A ATP-dependent RNA helic 99.9 1E-25 3.5E-30 243.6 21.9 187 370-566 2-205 (206)
56 3fe2_A Probable ATP-dependent 99.9 3.9E-26 1.3E-30 254.3 18.2 190 369-568 27-237 (242)
57 3iuy_A Probable ATP-dependent 99.9 8.5E-26 2.9E-30 248.8 20.1 189 369-567 17-227 (228)
58 1q0u_A Bstdead; DEAD protein, 99.9 8.2E-26 2.8E-30 247.6 19.2 192 371-572 4-215 (219)
59 3bor_A Human initiation factor 99.9 2E-25 7E-30 247.9 18.6 188 369-566 28-232 (237)
60 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 3.9E-24 1.3E-28 280.4 33.7 410 399-943 270-793 (1038)
61 2oxc_A Probable ATP-dependent 99.9 4.3E-25 1.5E-29 244.0 20.5 188 369-566 22-226 (230)
62 2gxq_A Heat resistant RNA depe 99.9 3.7E-25 1.3E-29 239.2 19.2 184 372-566 2-203 (207)
63 1qde_A EIF4A, translation init 99.9 4.6E-25 1.6E-29 241.8 20.1 189 369-567 12-215 (224)
64 2pl3_A Probable ATP-dependent 99.9 7.8E-25 2.7E-29 242.3 21.0 188 369-567 23-231 (236)
65 3fmo_B ATP-dependent RNA helic 99.9 7.3E-25 2.5E-29 252.5 19.8 189 367-566 88-295 (300)
66 3ly5_A ATP-dependent RNA helic 99.9 5.3E-25 1.8E-29 248.6 17.5 179 368-554 49-251 (262)
67 3ber_A Probable ATP-dependent 99.9 1.1E-24 3.8E-29 244.2 19.7 189 369-567 41-246 (249)
68 1t6n_A Probable ATP-dependent 99.9 2.3E-24 8E-29 235.8 19.9 186 370-566 13-218 (220)
69 1z3i_X Similar to RAD54-like; 99.9 6.4E-23 2.2E-27 259.7 35.6 374 400-842 55-529 (644)
70 1wrb_A DJVLGB; RNA helicase, D 99.9 1.6E-24 5.5E-29 242.5 17.9 190 369-568 21-239 (253)
71 3dkp_A Probable ATP-dependent 99.9 2.2E-24 7.7E-29 240.0 17.6 189 370-568 24-240 (245)
72 3mwy_W Chromo domain-containin 99.9 2.3E-23 7.9E-28 270.0 26.8 374 397-842 233-685 (800)
73 3jux_A Protein translocase sub 99.9 2.5E-21 8.6E-26 238.9 31.5 122 669-841 456-587 (822)
74 1c4o_A DNA nucleotide excision 99.9 3.1E-20 1.1E-24 235.5 27.8 110 685-841 439-550 (664)
75 2d7d_A Uvrabc system protein B 99.8 9.4E-19 3.2E-23 221.9 29.2 112 684-841 444-556 (661)
76 3b6e_A Interferon-induced heli 99.8 5.4E-20 1.9E-24 199.3 14.7 149 397-545 30-216 (216)
77 1rif_A DAR protein, DNA helica 99.8 2.4E-19 8.3E-24 204.1 14.1 145 399-550 112-266 (282)
78 2hjv_A ATP-dependent RNA helic 99.8 1.8E-18 6.1E-23 181.2 16.6 132 670-852 20-151 (163)
79 2rb4_A ATP-dependent RNA helic 99.8 2.1E-18 7.1E-23 182.8 16.1 130 671-851 20-155 (175)
80 3llm_A ATP-dependent RNA helic 99.8 1.5E-18 5.1E-23 192.6 15.5 157 397-558 58-229 (235)
81 2ipc_A Preprotein translocase 99.8 4.8E-17 1.6E-21 204.2 30.1 123 394-518 73-215 (997)
82 1t5i_A C_terminal domain of A 99.8 1.8E-18 6.1E-23 183.1 13.2 123 670-841 16-138 (172)
83 3eaq_A Heat resistant RNA depe 99.8 3.9E-18 1.3E-22 186.6 16.0 131 670-851 16-146 (212)
84 1fuk_A Eukaryotic initiation f 99.8 5.4E-18 1.8E-22 177.8 14.6 129 672-851 17-145 (165)
85 2vl7_A XPD; helicase, unknown 99.7 2.7E-17 9.2E-22 204.2 22.6 119 397-518 4-188 (540)
86 2fz4_A DNA repair protein RAD2 99.7 1.4E-17 4.7E-22 185.4 16.3 141 396-550 89-232 (237)
87 2jgn_A DBX, DDX3, ATP-dependen 99.7 1.1E-17 3.9E-22 179.1 13.8 123 670-841 30-153 (185)
88 2p6n_A ATP-dependent RNA helic 99.7 2.4E-17 8.1E-22 177.7 15.2 122 670-841 40-161 (191)
89 3i32_A Heat resistant RNA depe 99.7 3.2E-17 1.1E-21 188.6 15.7 129 671-850 14-142 (300)
90 3crv_A XPD/RAD3 related DNA he 99.7 1.9E-15 6.4E-20 188.2 24.8 119 398-519 1-187 (551)
91 2yjt_D ATP-dependent RNA helic 99.5 4.4E-18 1.5E-22 179.5 0.0 121 672-841 17-137 (170)
92 4a15_A XPD helicase, ATP-depen 99.5 4.1E-13 1.4E-17 169.1 21.6 68 399-466 2-74 (620)
93 1z5z_A Helicase of the SNF2/RA 99.3 2.6E-12 8.9E-17 145.8 11.3 122 673-842 101-225 (271)
94 1w36_D RECD, exodeoxyribonucle 98.3 1.1E-06 3.6E-11 110.7 11.4 137 402-544 151-297 (608)
95 3e1s_A Exodeoxyribonuclease V, 98.1 1E-05 3.5E-10 100.9 12.7 123 398-543 187-313 (574)
96 3upu_A ATP-dependent DNA helic 98.0 2.3E-05 7.8E-10 95.2 12.9 131 397-543 21-162 (459)
97 4b3f_X DNA-binding protein smu 97.7 4.9E-05 1.7E-09 96.3 8.4 68 400-467 189-257 (646)
98 2gk6_A Regulator of nonsense t 97.6 0.00028 9.5E-09 89.0 13.5 68 400-467 180-248 (624)
99 2xzl_A ATP-dependent helicase 97.5 0.00014 4.8E-09 94.1 10.1 68 400-467 360-428 (802)
100 2wjy_A Regulator of nonsense t 97.4 0.00058 2E-08 88.3 13.1 68 400-467 356-424 (800)
101 2o0j_A Terminase, DNA packagin 97.0 0.0052 1.8E-07 72.7 14.9 147 397-556 160-323 (385)
102 3lfu_A DNA helicase II; SF1 he 96.9 0.003 1E-07 79.5 12.3 65 400-466 9-77 (647)
103 3cpe_A Terminase, DNA packagin 96.9 0.0058 2E-07 76.5 14.3 137 396-543 159-311 (592)
104 3ec2_A DNA replication protein 96.6 0.018 6E-07 60.2 13.6 119 402-549 16-146 (180)
105 3vkw_A Replicase large subunit 96.2 0.018 6E-07 69.2 11.7 107 417-545 163-269 (446)
106 2b8t_A Thymidine kinase; deoxy 96.0 0.015 5.1E-07 63.8 8.8 92 413-518 10-102 (223)
107 3te6_A Regulatory protein SIR3 95.8 0.03 1E-06 64.5 10.7 118 414-550 44-177 (318)
108 2orw_A Thymidine kinase; TMTK, 95.7 0.012 4.1E-07 62.4 6.5 40 414-453 2-41 (184)
109 1xx6_A Thymidine kinase; NESG, 95.6 0.025 8.6E-07 60.5 8.5 107 415-542 8-114 (191)
110 2kjq_A DNAA-related protein; s 95.3 0.014 4.7E-07 59.8 5.1 36 414-449 35-70 (149)
111 1l8q_A Chromosomal replication 95.2 0.082 2.8E-06 60.5 11.6 76 415-519 37-112 (324)
112 2v1u_A Cell division control p 95.2 0.041 1.4E-06 63.9 9.1 24 414-437 43-66 (387)
113 2w58_A DNAI, primosome compone 95.1 0.084 2.9E-06 55.9 10.5 35 416-450 55-89 (202)
114 2qby_B CDC6 homolog 3, cell di 94.9 0.066 2.2E-06 62.4 10.0 36 415-450 45-88 (384)
115 3bos_A Putative DNA replicatio 94.7 0.073 2.5E-06 57.3 8.9 37 414-450 51-87 (242)
116 3kl4_A SRP54, signal recogniti 94.4 0.32 1.1E-05 58.3 14.4 132 415-557 97-235 (433)
117 2z4s_A Chromosomal replication 94.4 0.25 8.6E-06 59.4 13.5 77 415-520 130-209 (440)
118 2p65_A Hypothetical protein PF 94.3 0.052 1.8E-06 55.8 6.5 21 415-435 43-63 (187)
119 3u4q_A ATP-dependent helicase/ 94.3 0.048 1.6E-06 74.0 7.7 68 398-467 8-81 (1232)
120 2j9r_A Thymidine kinase; TK1, 94.2 0.11 3.9E-06 56.3 9.0 40 415-454 28-67 (214)
121 2zpa_A Uncharacterized protein 94.1 0.099 3.4E-06 65.7 9.4 115 400-549 175-291 (671)
122 1uaa_A REP helicase, protein ( 94.1 0.055 1.9E-06 68.7 7.2 84 400-494 2-89 (673)
123 2qgz_A Helicase loader, putati 94.1 0.13 4.5E-06 58.9 9.7 36 415-450 152-188 (308)
124 1fnn_A CDC6P, cell division co 93.8 0.1 3.5E-06 60.6 8.3 33 417-450 46-80 (389)
125 1a5t_A Delta prime, HOLB; zinc 93.8 0.26 8.8E-06 56.9 11.5 125 402-543 4-145 (334)
126 1pjr_A PCRA; DNA repair, DNA r 93.8 0.088 3E-06 67.4 8.3 66 400-467 11-80 (724)
127 1jbk_A CLPB protein; beta barr 93.3 0.18 6.3E-06 51.6 8.3 21 415-435 43-63 (195)
128 2orv_A Thymidine kinase; TP4A 93.2 0.14 4.9E-06 56.2 7.5 41 414-454 18-58 (234)
129 2chg_A Replication factor C sm 93.2 0.45 1.5E-05 49.9 11.5 19 416-434 39-57 (226)
130 2qby_A CDC6 homolog 1, cell di 93.2 0.11 3.7E-06 60.1 7.0 36 415-450 45-83 (386)
131 1w4r_A Thymidine kinase; type 93.1 0.057 2E-06 57.8 4.1 39 414-452 19-57 (195)
132 3co5_A Putative two-component 92.7 0.12 4.1E-06 52.0 5.7 21 412-432 24-44 (143)
133 3syl_A Protein CBBX; photosynt 92.4 0.35 1.2E-05 54.5 9.7 19 415-433 67-85 (309)
134 2cvh_A DNA repair and recombin 92.3 0.21 7.3E-06 53.1 7.4 35 414-451 19-53 (220)
135 3h4m_A Proteasome-activating n 92.2 0.66 2.3E-05 51.6 11.7 56 369-433 12-69 (285)
136 1sxj_A Activator 1 95 kDa subu 92.2 0.39 1.3E-05 58.9 10.5 72 370-450 35-109 (516)
137 2px0_A Flagellar biosynthesis 92.2 0.71 2.4E-05 52.5 11.9 125 414-557 104-234 (296)
138 1g5t_A COB(I)alamin adenosyltr 92.1 0.28 9.5E-06 52.6 7.8 39 415-453 28-66 (196)
139 3dm5_A SRP54, signal recogniti 92.1 0.59 2E-05 56.1 11.5 122 415-547 100-225 (443)
140 1njg_A DNA polymerase III subu 92.1 1 3.4E-05 47.7 12.4 19 417-435 47-65 (250)
141 2w0m_A SSO2452; RECA, SSPF, un 91.6 1.1 3.7E-05 47.7 12.0 38 413-450 21-58 (235)
142 2q6t_A DNAB replication FORK h 91.4 0.32 1.1E-05 58.6 8.3 39 413-451 198-237 (444)
143 2bjv_A PSP operon transcriptio 91.4 0.45 1.5E-05 52.6 8.9 22 413-434 27-48 (265)
144 1d2n_A N-ethylmaleimide-sensit 91.1 0.55 1.9E-05 52.1 9.4 18 416-433 65-82 (272)
145 3u61_B DNA polymerase accessor 91.0 0.41 1.4E-05 54.6 8.3 41 503-543 103-143 (324)
146 1iqp_A RFCS; clamp loader, ext 91.0 0.74 2.5E-05 51.9 10.4 17 417-433 48-64 (327)
147 1sxj_E Activator 1 40 kDa subu 91.0 1.6 5.6E-05 50.0 13.5 43 503-546 132-174 (354)
148 3e2i_A Thymidine kinase; Zn-bi 90.9 0.54 1.9E-05 51.1 8.6 41 414-454 27-67 (219)
149 2qz4_A Paraplegin; AAA+, SPG7, 90.8 1.2 4E-05 48.8 11.5 55 371-433 3-57 (262)
150 3eie_A Vacuolar protein sortin 90.8 1.1 3.6E-05 51.3 11.5 57 369-433 13-69 (322)
151 1w5s_A Origin recognition comp 90.8 0.45 1.5E-05 55.8 8.6 36 415-450 50-93 (412)
152 2i3b_A HCR-ntpase, human cance 90.7 0.62 2.1E-05 49.5 8.8 56 503-559 103-160 (189)
153 3pfi_A Holliday junction ATP-d 90.4 1.1 3.8E-05 51.1 11.3 48 371-433 26-73 (338)
154 2r6a_A DNAB helicase, replicat 90.4 0.69 2.4E-05 55.8 9.9 40 412-451 200-240 (454)
155 1sxj_D Activator 1 41 kDa subu 90.3 0.75 2.6E-05 52.6 9.8 39 504-543 132-170 (353)
156 3uk6_A RUVB-like 2; hexameric 90.0 0.56 1.9E-05 54.2 8.4 57 369-441 39-95 (368)
157 1sxj_C Activator 1 40 kDa subu 89.8 0.64 2.2E-05 53.5 8.6 39 504-543 109-147 (340)
158 1xwi_A SKD1 protein; VPS4B, AA 89.7 1.3 4.3E-05 50.9 11.0 57 369-433 7-63 (322)
159 4a1f_A DNAB helicase, replicat 89.3 0.33 1.1E-05 56.4 5.7 40 412-451 43-82 (338)
160 1hqc_A RUVB; extended AAA-ATPa 89.0 0.93 3.2E-05 51.3 9.1 48 371-433 9-56 (324)
161 2gno_A DNA polymerase III, gam 88.7 1.3 4.3E-05 50.7 9.9 38 502-543 79-119 (305)
162 1sxj_B Activator 1 37 kDa subu 88.1 1.9 6.4E-05 48.5 10.8 19 417-435 44-62 (323)
163 1n0w_A DNA repair protein RAD5 88.0 0.72 2.5E-05 49.7 7.0 38 413-450 22-65 (243)
164 1u94_A RECA protein, recombina 87.9 0.54 1.8E-05 55.0 6.2 92 414-518 62-154 (356)
165 3bgw_A DNAB-like replicative h 87.6 0.57 2E-05 56.4 6.4 40 412-451 194-233 (444)
166 2chq_A Replication factor C sm 87.4 1.5 5.2E-05 49.1 9.5 44 370-433 13-56 (319)
167 2zr9_A Protein RECA, recombina 87.1 0.31 1.1E-05 56.9 3.5 39 414-452 60-98 (349)
168 2qp9_X Vacuolar protein sortin 86.8 2.5 8.5E-05 49.1 11.1 57 369-433 46-102 (355)
169 1xp8_A RECA protein, recombina 86.6 0.94 3.2E-05 53.2 7.3 92 414-518 73-165 (366)
170 2qen_A Walker-type ATPase; unk 86.2 1.7 5.9E-05 49.2 9.2 32 403-434 18-50 (350)
171 1nlf_A Regulatory protein REPA 85.9 2 6.9E-05 47.9 9.3 40 412-451 27-76 (279)
172 1jr3_A DNA polymerase III subu 85.9 3 0.0001 47.9 11.1 23 417-440 40-62 (373)
173 1vma_A Cell division protein F 85.5 1.4 4.8E-05 50.4 7.8 93 414-517 103-198 (306)
174 1ls1_A Signal recognition part 85.4 2 7E-05 48.6 9.1 94 414-518 97-193 (295)
175 3pvs_A Replication-associated 84.7 0.78 2.7E-05 55.3 5.5 18 416-433 51-68 (447)
176 2dr3_A UPF0273 protein PH0284; 84.7 0.8 2.7E-05 49.4 5.2 39 413-451 21-59 (247)
177 3hu3_A Transitional endoplasmi 84.7 2.3 7.8E-05 51.8 9.7 55 370-433 200-256 (489)
178 3hr8_A Protein RECA; alpha and 84.4 0.5 1.7E-05 55.3 3.5 43 414-456 60-102 (356)
179 1zu4_A FTSY; GTPase, signal re 83.9 2 6.7E-05 49.5 8.2 96 413-518 103-204 (320)
180 3vfd_A Spastin; ATPase, microt 83.9 2.7 9.1E-05 49.4 9.5 57 369-433 110-166 (389)
181 3hgt_A HDA1 complex subunit 3; 82.9 2.7 9.4E-05 48.3 8.7 120 670-842 111-238 (328)
182 3cmu_A Protein RECA, recombina 82.9 1.6 5.6E-05 61.1 8.1 47 409-455 1415-1467(2050)
183 2ce7_A Cell division protein F 82.8 4.4 0.00015 49.1 11.0 55 369-433 11-67 (476)
184 2va8_A SSO2462, SKI2-type heli 82.3 2.8 9.4E-05 53.3 9.4 172 1183-1368 472-652 (715)
185 3cmw_A Protein RECA, recombina 81.5 1.5 5.2E-05 60.6 6.9 85 415-518 1431-1522(1706)
186 2yhs_A FTSY, cell division pro 80.1 7.4 0.00025 47.3 11.5 130 414-556 292-434 (503)
187 2fna_A Conserved hypothetical 79.9 29 0.00098 39.0 16.1 20 416-435 31-50 (357)
188 2v3c_C SRP54, signal recogniti 78.3 1.5 5E-05 52.7 4.6 35 416-450 100-134 (432)
189 2zts_A Putative uncharacterize 77.8 1.9 6.7E-05 46.4 5.1 38 414-451 29-67 (251)
190 3pxi_A Negative regulator of g 77.7 3 0.0001 53.5 7.6 17 417-433 523-539 (758)
191 1qvr_A CLPB protein; coiled co 77.7 2.6 9E-05 54.9 7.1 22 415-436 191-212 (854)
192 3e70_C DPA, signal recognition 77.6 18 0.00062 41.5 13.4 124 414-548 128-255 (328)
193 1r6b_X CLPA protein; AAA+, N-t 77.4 3.9 0.00013 52.4 8.5 21 414-434 206-226 (758)
194 3cmw_A Protein RECA, recombina 77.0 3.2 0.00011 57.5 7.8 93 414-519 33-126 (1706)
195 2ffh_A Protein (FFH); SRP54, s 76.3 9.4 0.00032 45.6 10.8 120 414-546 97-222 (425)
196 1e9r_A Conjugal transfer prote 76.2 2 6.8E-05 51.2 5.0 43 415-457 53-95 (437)
197 3k1j_A LON protease, ATP-depen 76.0 6.5 0.00022 49.0 9.8 28 412-440 57-84 (604)
198 3n70_A Transport activator; si 75.5 2 7E-05 42.9 4.1 21 413-433 22-42 (145)
199 1qvr_A CLPB protein; coiled co 75.0 5.3 0.00018 52.0 8.9 24 416-440 589-612 (854)
200 3m6a_A ATP-dependent protease 75.0 2.1 7.1E-05 52.9 4.8 26 414-440 107-132 (543)
201 3bh0_A DNAB-like replicative h 74.1 2.6 9E-05 48.1 5.1 40 412-451 65-104 (315)
202 2xxa_A Signal recognition part 73.6 8.6 0.00029 46.0 9.6 92 416-518 101-196 (433)
203 4b4t_M 26S protease regulatory 73.6 1.2 4E-05 53.5 2.0 57 368-432 175-232 (434)
204 4ag6_A VIRB4 ATPase, type IV s 73.2 2.9 0.0001 49.0 5.4 41 414-454 34-74 (392)
205 4b4t_J 26S protease regulatory 72.0 1.5 5E-05 52.1 2.3 56 369-432 143-199 (405)
206 3lda_A DNA repair protein RAD5 71.6 3.3 0.00011 49.1 5.2 38 414-451 177-220 (400)
207 3b9q_A Chloroplast SRP recepto 70.8 15 0.00051 41.7 10.3 62 413-474 98-161 (302)
208 2oap_1 GSPE-2, type II secreti 70.7 2.4 8.2E-05 51.9 3.9 47 401-448 245-292 (511)
209 3hjh_A Transcription-repair-co 70.1 11 0.00037 45.8 9.4 51 414-467 13-63 (483)
210 2j37_W Signal recognition part 69.8 13 0.00043 45.4 10.0 130 416-557 102-237 (504)
211 3cf2_A TER ATPase, transitiona 69.4 4.2 0.00014 52.4 5.8 57 368-432 471-528 (806)
212 2og2_A Putative signal recogni 68.9 22 0.00077 41.3 11.5 121 413-546 155-288 (359)
213 2z43_A DNA repair and recombin 68.9 3.2 0.00011 47.6 4.2 41 413-453 105-151 (324)
214 2ehv_A Hypothetical protein PH 67.7 4.9 0.00017 43.2 5.2 39 412-450 27-66 (251)
215 3cf0_A Transitional endoplasmi 67.6 5.8 0.0002 44.7 6.0 58 369-433 10-67 (301)
216 1gm5_A RECG; helicase, replica 67.4 13 0.00045 47.8 9.9 78 685-797 417-495 (780)
217 4b4t_L 26S protease subunit RP 67.3 1.8 6.2E-05 51.9 1.7 57 368-432 175-232 (437)
218 1p9r_A General secretion pathw 67.2 6.3 0.00021 47.0 6.4 39 402-441 152-192 (418)
219 4b4t_I 26S protease regulatory 66.9 2.1 7.2E-05 51.1 2.2 57 368-432 176-233 (437)
220 1cr0_A DNA primase/helicase; R 66.7 3.9 0.00013 45.8 4.3 39 412-450 32-71 (296)
221 3io5_A Recombination and repai 66.1 2.8 9.5E-05 48.2 2.9 90 414-518 28-124 (333)
222 2eyu_A Twitching motility prot 65.7 4.1 0.00014 45.3 4.1 21 412-432 22-42 (261)
223 2p6r_A Afuhel308 helicase; pro 64.5 12 0.0004 47.4 8.6 154 1182-1351 453-614 (702)
224 3i4u_A ATP-dependent RNA helic 64.2 25 0.00085 39.3 10.2 132 1184-1346 20-153 (270)
225 4b4t_H 26S protease regulatory 62.2 2 6.7E-05 51.8 0.7 56 369-432 204-260 (467)
226 2c9o_A RUVB-like 1; hexameric 61.8 12 0.00041 44.8 7.6 108 369-519 32-140 (456)
227 1q57_A DNA primase/helicase; d 60.5 4.6 0.00016 49.1 3.6 40 412-451 239-279 (503)
228 1v5w_A DMC1, meiotic recombina 59.8 5.2 0.00018 46.2 3.7 40 414-453 121-166 (343)
229 2yvu_A Probable adenylyl-sulfa 59.6 8.1 0.00028 39.9 4.8 36 414-449 12-47 (186)
230 3vaa_A Shikimate kinase, SK; s 59.0 6.4 0.00022 41.3 4.0 21 413-433 23-43 (199)
231 2ewv_A Twitching motility prot 58.8 6.9 0.00024 45.8 4.6 36 412-448 133-170 (372)
232 4fcw_A Chaperone protein CLPB; 58.0 8.1 0.00028 43.1 4.9 20 416-435 48-67 (311)
233 2x8a_A Nuclear valosin-contain 57.9 5.9 0.0002 44.2 3.7 55 369-432 5-61 (274)
234 4b4t_K 26S protease regulatory 57.5 15 0.00051 43.9 7.2 58 368-432 166-223 (428)
235 1kgd_A CASK, peripheral plasma 57.2 6.8 0.00023 40.5 3.8 20 414-433 4-23 (180)
236 3hws_A ATP-dependent CLP prote 57.0 15 0.00053 42.2 7.2 20 414-433 50-69 (363)
237 3b85_A Phosphate starvation-in 56.8 8.5 0.00029 41.2 4.5 32 403-434 10-41 (208)
238 2zj8_A DNA helicase, putative 56.8 21 0.00072 45.2 9.0 173 1182-1367 454-640 (720)
239 2gza_A Type IV secretion syste 56.8 6.5 0.00022 45.8 3.9 21 412-432 172-192 (361)
240 3b9p_A CG5977-PA, isoform A; A 56.5 18 0.00061 40.2 7.3 57 369-433 16-72 (297)
241 3jvv_A Twitching mobility prot 56.4 8.3 0.00028 44.9 4.7 28 413-441 121-148 (356)
242 3oiy_A Reverse gyrase helicase 55.9 29 0.001 40.3 9.5 79 683-797 62-144 (414)
243 3uie_A Adenylyl-sulfate kinase 55.8 10 0.00034 39.8 4.9 33 401-434 12-44 (200)
244 1lv7_A FTSH; alpha/beta domain 55.7 12 0.00039 40.9 5.5 57 369-433 7-63 (257)
245 3tau_A Guanylate kinase, GMP k 55.7 6.6 0.00023 41.6 3.4 19 414-432 7-25 (208)
246 2r8r_A Sensor protein; KDPD, P 55.7 10 0.00035 41.4 5.0 112 417-544 8-125 (228)
247 1ojl_A Transcriptional regulat 55.5 7.2 0.00025 44.2 3.9 22 413-434 23-44 (304)
248 3fkq_A NTRC-like two-domain pr 55.0 15 0.00052 42.7 6.7 34 417-450 145-179 (373)
249 3a8t_A Adenylate isopentenyltr 54.7 6.1 0.00021 45.7 3.1 17 415-431 40-56 (339)
250 2r2a_A Uncharacterized protein 54.7 6.4 0.00022 42.0 3.1 36 417-452 7-47 (199)
251 2qor_A Guanylate kinase; phosp 54.6 6.2 0.00021 41.6 3.0 22 412-433 9-30 (204)
252 1nks_A Adenylate kinase; therm 54.6 17 0.00057 37.2 6.2 38 417-455 3-40 (194)
253 3trf_A Shikimate kinase, SK; a 54.6 8.2 0.00028 39.6 3.9 19 415-433 5-23 (185)
254 3crm_A TRNA delta(2)-isopenten 54.5 17 0.00057 41.8 6.7 17 417-433 7-23 (323)
255 1xjc_A MOBB protein homolog; s 54.2 12 0.0004 38.9 4.9 34 417-450 6-39 (169)
256 1qhx_A CPT, protein (chloramph 53.0 6.5 0.00022 40.0 2.8 18 415-432 3-20 (178)
257 1m7g_A Adenylylsulfate kinase; 52.0 14 0.00047 39.1 5.2 48 401-450 12-61 (211)
258 3lw7_A Adenylate kinase relate 51.9 6.9 0.00023 39.2 2.7 19 417-435 3-21 (179)
259 1rj9_A FTSY, signal recognitio 51.8 13 0.00045 42.2 5.3 36 414-449 101-136 (304)
260 3tr0_A Guanylate kinase, GMP k 51.8 7.8 0.00027 40.3 3.2 21 413-433 5-25 (205)
261 2j41_A Guanylate kinase; GMP, 51.5 8 0.00027 40.3 3.2 21 413-433 4-24 (207)
262 1fuk_A Eukaryotic initiation f 51.4 45 0.0015 33.5 8.8 85 420-512 9-105 (165)
263 1lvg_A Guanylate kinase, GMP k 51.2 8.2 0.00028 40.7 3.2 19 414-432 3-21 (198)
264 3cmu_A Protein RECA, recombina 51.1 11 0.00039 52.9 5.4 39 414-452 1080-1118(2050)
265 2pt7_A CAG-ALFA; ATPase, prote 51.0 6.7 0.00023 45.1 2.7 20 412-431 168-187 (330)
266 2r44_A Uncharacterized protein 50.9 10 0.00034 43.1 4.1 31 409-440 40-70 (331)
267 1ixz_A ATP-dependent metallopr 50.8 23 0.00079 38.3 6.9 55 369-433 11-67 (254)
268 2hjv_A ATP-dependent RNA helic 50.7 68 0.0023 32.1 10.1 64 442-511 34-109 (163)
269 2jgn_A DBX, DDX3, ATP-dependen 50.5 26 0.00089 36.3 7.0 80 425-511 29-120 (185)
270 1zp6_A Hypothetical protein AT 50.4 6.4 0.00022 40.6 2.2 22 412-433 6-27 (191)
271 1rz3_A Hypothetical protein rb 50.2 14 0.00047 38.9 4.8 21 415-435 22-42 (201)
272 3d8b_A Fidgetin-like protein 1 50.2 21 0.00071 41.2 6.7 56 370-433 80-135 (357)
273 3of5_A Dethiobiotin synthetase 50.2 13 0.00045 40.3 4.7 35 417-451 6-41 (228)
274 2pez_A Bifunctional 3'-phospho 49.7 15 0.0005 37.6 4.8 21 414-434 4-24 (179)
275 1y63_A LMAJ004144AAA protein; 49.4 11 0.00037 39.0 3.8 20 414-433 9-28 (184)
276 1tf7_A KAIC; homohexamer, hexa 49.4 14 0.00047 45.2 5.3 41 412-452 278-318 (525)
277 1ofh_A ATP-dependent HSL prote 49.4 15 0.00051 40.7 5.2 20 414-433 49-68 (310)
278 4a74_A DNA repair and recombin 49.1 11 0.00037 39.8 3.9 39 413-451 23-67 (231)
279 2z0h_A DTMP kinase, thymidylat 48.9 15 0.00052 37.7 4.9 32 418-449 3-34 (197)
280 2i1q_A DNA repair and recombin 48.8 8.5 0.00029 43.7 3.1 39 414-452 97-151 (322)
281 2ze6_A Isopentenyl transferase 48.4 10 0.00035 41.7 3.5 16 417-432 3-18 (253)
282 1kag_A SKI, shikimate kinase I 48.4 12 0.00041 37.8 3.8 20 414-433 3-22 (173)
283 2r62_A Cell division protease 48.1 8.6 0.00029 42.1 2.9 55 369-433 6-62 (268)
284 3exa_A TRNA delta(2)-isopenten 48.1 8.9 0.0003 44.0 3.0 17 416-432 4-20 (322)
285 3foz_A TRNA delta(2)-isopenten 48.0 9.9 0.00034 43.5 3.4 16 417-432 12-27 (316)
286 3bs4_A Uncharacterized protein 48.0 9.7 0.00033 42.4 3.3 38 414-451 20-57 (260)
287 3nbx_X ATPase RAVA; AAA+ ATPas 47.8 9.5 0.00032 46.5 3.4 29 405-433 31-59 (500)
288 3iij_A Coilin-interacting nucl 47.8 13 0.00044 38.0 4.0 20 414-433 10-29 (180)
289 2l8b_A Protein TRAI, DNA helic 47.5 25 0.00086 37.1 6.1 121 400-545 34-158 (189)
290 2eyq_A TRCF, transcription-rep 47.3 48 0.0016 44.6 10.4 79 684-797 651-730 (1151)
291 2p6n_A ATP-dependent RNA helic 47.2 51 0.0017 34.4 8.6 64 442-511 53-128 (191)
292 4ddu_A Reverse gyrase; topoiso 47.1 43 0.0015 44.8 9.8 79 683-797 119-201 (1104)
293 3ney_A 55 kDa erythrocyte memb 47.0 12 0.00043 39.7 3.8 19 414-432 18-36 (197)
294 1s96_A Guanylate kinase, GMP k 46.7 11 0.00038 40.6 3.4 23 411-433 12-34 (219)
295 1z6g_A Guanylate kinase; struc 46.3 12 0.0004 40.2 3.5 22 412-433 20-41 (218)
296 2vhj_A Ntpase P4, P4; non- hyd 45.8 7.7 0.00026 44.7 2.0 34 414-450 122-155 (331)
297 2v9p_A Replication protein E1; 45.6 12 0.00042 42.5 3.8 36 413-451 124-159 (305)
298 3kb2_A SPBC2 prophage-derived 45.5 13 0.00044 37.3 3.5 18 417-434 3-20 (173)
299 3a00_A Guanylate kinase, GMP k 45.1 12 0.00041 38.7 3.3 18 415-432 1-18 (186)
300 3qxc_A Dethiobiotin synthetase 44.9 19 0.00066 39.5 5.0 36 416-451 22-58 (242)
301 3d3q_A TRNA delta(2)-isopenten 44.8 12 0.0004 43.4 3.4 16 417-432 9-24 (340)
302 3t15_A Ribulose bisphosphate c 44.7 15 0.00051 41.3 4.2 32 416-450 37-68 (293)
303 1kht_A Adenylate kinase; phosp 44.7 14 0.0005 37.6 3.8 20 415-434 3-22 (192)
304 2qmh_A HPR kinase/phosphorylas 44.6 10 0.00035 40.7 2.6 17 415-431 34-50 (205)
305 3a4m_A L-seryl-tRNA(SEC) kinas 44.2 20 0.00067 39.4 5.0 36 415-450 4-39 (260)
306 2zan_A Vacuolar protein sortin 44.1 23 0.0008 42.2 6.1 73 369-451 129-201 (444)
307 2rb4_A ATP-dependent RNA helic 44.0 27 0.00092 35.6 5.7 64 442-511 33-108 (175)
308 1iy2_A ATP-dependent metallopr 43.6 32 0.0011 37.9 6.7 55 369-433 35-91 (278)
309 2pbr_A DTMP kinase, thymidylat 43.5 22 0.00074 36.4 5.0 32 417-448 2-33 (195)
310 1nn5_A Similar to deoxythymidy 43.5 24 0.0008 36.8 5.4 35 414-448 8-42 (215)
311 4eun_A Thermoresistant glucoki 43.3 16 0.00054 38.2 4.0 21 413-433 27-47 (200)
312 1znw_A Guanylate kinase, GMP k 43.0 14 0.00048 39.0 3.5 22 411-432 16-37 (207)
313 3eaq_A Heat resistant RNA depe 43.0 53 0.0018 34.8 8.1 65 441-511 29-105 (212)
314 1ly1_A Polynucleotide kinase; 42.9 10 0.00035 38.4 2.3 17 417-433 4-20 (181)
315 1ex7_A Guanylate kinase; subst 42.6 14 0.00048 38.9 3.4 44 482-535 48-91 (186)
316 1knq_A Gluconate kinase; ALFA/ 42.2 14 0.00048 37.5 3.3 21 414-434 7-27 (175)
317 1pzn_A RAD51, DNA repair and r 41.9 15 0.00053 42.4 3.9 38 414-451 130-173 (349)
318 3eph_A TRNA isopentenyltransfe 41.6 14 0.00048 43.7 3.5 16 417-432 4-19 (409)
319 1j8m_F SRP54, signal recogniti 41.4 16 0.00055 41.3 3.9 93 415-518 98-193 (297)
320 2c95_A Adenylate kinase 1; tra 40.9 19 0.00064 37.0 4.0 22 413-434 7-28 (196)
321 3c8u_A Fructokinase; YP_612366 40.9 22 0.00074 37.5 4.6 19 414-432 21-39 (208)
322 3u4q_B ATP-dependent helicase/ 40.9 18 0.00061 48.8 4.7 48 418-466 4-54 (1166)
323 3cm0_A Adenylate kinase; ATP-b 40.6 14 0.00048 37.8 2.9 21 414-434 3-23 (186)
324 1c9k_A COBU, adenosylcobinamid 40.6 11 0.00037 39.7 2.0 34 418-455 2-35 (180)
325 2wwf_A Thymidilate kinase, put 40.5 27 0.00094 36.3 5.3 22 414-435 9-30 (212)
326 4gp7_A Metallophosphoesterase; 40.4 11 0.00039 38.5 2.2 21 413-433 7-27 (171)
327 2plr_A DTMP kinase, probable t 40.2 22 0.00076 36.9 4.5 21 415-435 4-24 (213)
328 2bwj_A Adenylate kinase 5; pho 39.2 19 0.00064 37.1 3.7 22 413-434 10-31 (199)
329 1np6_A Molybdopterin-guanine d 39.1 28 0.00096 36.1 4.9 19 416-434 7-25 (174)
330 1byi_A Dethiobiotin synthase; 39.0 28 0.00097 36.6 5.2 34 418-451 4-38 (224)
331 4akg_A Glutathione S-transfera 38.9 22 0.00077 51.6 5.4 38 397-434 901-942 (2695)
332 2rhm_A Putative kinase; P-loop 38.8 18 0.00061 37.1 3.4 20 415-434 5-24 (193)
333 1gtv_A TMK, thymidylate kinase 38.8 12 0.00042 39.1 2.2 19 417-435 2-20 (214)
334 2i4i_A ATP-dependent RNA helic 38.5 54 0.0018 37.8 7.9 70 436-511 269-350 (417)
335 3lnc_A Guanylate kinase, GMP k 38.2 13 0.00044 39.8 2.3 22 412-433 24-45 (231)
336 1odf_A YGR205W, hypothetical 3 37.8 17 0.0006 40.9 3.4 18 416-433 32-49 (290)
337 3qf7_A RAD50; ABC-ATPase, ATPa 37.7 20 0.00068 41.7 3.9 17 417-433 25-41 (365)
338 2bdt_A BH3686; alpha-beta prot 37.6 11 0.00038 38.8 1.6 20 415-434 2-21 (189)
339 1zuh_A Shikimate kinase; alpha 37.5 21 0.00072 35.9 3.7 19 416-434 8-26 (168)
340 1um8_A ATP-dependent CLP prote 37.5 20 0.00067 41.6 3.8 19 415-433 72-90 (376)
341 3nwj_A ATSK2; P loop, shikimat 37.0 24 0.00084 38.8 4.3 20 414-433 47-66 (250)
342 3t61_A Gluconokinase; PSI-biol 37.0 20 0.0007 37.3 3.6 18 416-433 19-36 (202)
343 3pxg_A Negative regulator of g 36.9 29 0.00099 41.7 5.3 26 414-440 200-225 (468)
344 3fb4_A Adenylate kinase; psych 36.7 21 0.0007 37.6 3.6 19 417-435 2-20 (216)
345 1via_A Shikimate kinase; struc 36.7 23 0.00077 36.0 3.8 17 417-433 6-22 (175)
346 2qt1_A Nicotinamide riboside k 36.6 17 0.00059 38.0 2.9 21 413-433 19-39 (207)
347 1tev_A UMP-CMP kinase; ploop, 36.4 20 0.00068 36.6 3.3 20 415-434 3-22 (196)
348 2iyv_A Shikimate kinase, SK; t 36.4 24 0.00082 36.0 3.9 19 416-434 3-21 (184)
349 2ius_A DNA translocase FTSK; n 35.7 21 0.00071 43.6 3.7 25 413-437 165-189 (512)
350 3asz_A Uridine kinase; cytidin 35.4 19 0.00063 37.8 2.9 20 414-433 5-24 (211)
351 1tue_A Replication protein E1; 35.3 20 0.0007 38.6 3.2 38 401-440 41-82 (212)
352 2v54_A DTMP kinase, thymidylat 35.2 22 0.00075 36.8 3.4 21 414-434 3-23 (204)
353 1c4o_A DNA nucleotide excision 35.1 69 0.0024 40.3 8.6 86 426-517 422-519 (664)
354 3dl0_A Adenylate kinase; phosp 35.0 22 0.00074 37.5 3.4 18 417-434 2-19 (216)
355 1ihu_A Arsenical pump-driving 34.9 31 0.0011 42.6 5.3 36 415-450 8-43 (589)
356 1cke_A CK, MSSA, protein (cyti 34.5 25 0.00085 37.1 3.8 21 415-435 5-25 (227)
357 1e6c_A Shikimate kinase; phosp 34.4 26 0.00088 35.2 3.7 19 416-434 3-21 (173)
358 1qf9_A UMP/CMP kinase, protein 34.4 24 0.00082 35.9 3.5 18 417-434 8-25 (194)
359 1aky_A Adenylate kinase; ATP:A 34.3 26 0.0009 37.0 4.0 20 415-434 4-23 (220)
360 1zd8_A GTP:AMP phosphotransfer 34.3 24 0.00082 37.6 3.6 20 414-433 6-25 (227)
361 3zq6_A Putative arsenical pump 34.1 33 0.0011 39.0 4.9 34 417-450 16-49 (324)
362 2cdn_A Adenylate kinase; phosp 34.0 28 0.00094 36.2 4.0 20 415-434 20-39 (201)
363 1tc3_C Protein (TC3 transposas 34.0 15 0.00051 28.5 1.5 34 1301-1334 12-45 (51)
364 2woo_A ATPase GET3; tail-ancho 33.8 32 0.0011 39.2 4.8 33 417-449 21-53 (329)
365 1gvn_B Zeta; postsegregational 33.7 15 0.00051 41.2 1.9 19 415-433 33-51 (287)
366 1hyq_A MIND, cell division inh 33.7 35 0.0012 36.9 5.0 31 419-449 7-37 (263)
367 1zak_A Adenylate kinase; ATP:A 33.5 28 0.00095 36.9 4.0 20 415-434 5-24 (222)
368 1g3q_A MIND ATPase, cell divis 33.3 31 0.0011 36.6 4.4 31 419-449 7-37 (237)
369 1nij_A Hypothetical protein YJ 33.2 25 0.00084 40.0 3.7 34 417-452 6-39 (318)
370 4edh_A DTMP kinase, thymidylat 33.1 37 0.0013 36.3 4.8 36 414-449 5-40 (213)
371 3kta_A Chromosome segregation 32.3 26 0.00088 35.7 3.3 17 417-433 28-44 (182)
372 2elh_A CG11849-PA, LD40883P; s 32.2 3.9 0.00013 37.5 -2.7 45 1301-1345 29-73 (87)
373 4dzz_A Plasmid partitioning pr 32.1 29 0.001 35.8 3.8 111 420-557 7-119 (206)
374 1tf7_A KAIC; homohexamer, hexa 32.1 36 0.0012 41.4 5.2 38 413-450 37-75 (525)
375 2d7d_A Uvrabc system protein B 31.8 96 0.0033 39.0 9.1 76 436-517 438-525 (661)
376 1uf9_A TT1252 protein; P-loop, 31.5 22 0.00075 36.7 2.7 18 417-434 10-27 (203)
377 3p32_A Probable GTPase RV1496/ 31.5 38 0.0013 39.1 4.9 34 417-450 81-114 (355)
378 2f1r_A Molybdopterin-guanine d 31.1 33 0.0011 35.4 3.9 22 417-438 4-25 (171)
379 3i32_A Heat resistant RNA depe 31.0 1.2E+02 0.004 34.2 8.8 64 442-511 27-102 (300)
380 3ug7_A Arsenical pump-driving 31.0 39 0.0013 38.9 4.9 33 418-450 29-61 (349)
381 3auy_A DNA double-strand break 31.0 20 0.00069 41.6 2.5 23 417-440 27-49 (371)
382 3nwn_A Kinesin-like protein KI 31.0 30 0.001 40.2 4.0 24 408-431 96-121 (359)
383 1f2t_A RAD50 ABC-ATPase; DNA d 30.7 23 0.00077 35.6 2.5 23 417-440 25-47 (149)
384 1sq5_A Pantothenate kinase; P- 30.7 37 0.0013 38.3 4.6 20 414-433 79-98 (308)
385 2pt5_A Shikimate kinase, SK; a 30.6 31 0.0011 34.5 3.5 18 417-434 2-19 (168)
386 2jaq_A Deoxyguanosine kinase; 30.4 30 0.001 35.5 3.5 17 417-433 2-18 (205)
387 3cio_A ETK, tyrosine-protein k 30.3 47 0.0016 37.4 5.3 34 416-449 105-139 (299)
388 1ak2_A Adenylate kinase isoenz 30.3 33 0.0011 36.7 4.0 21 414-434 15-35 (233)
389 2ph1_A Nucleotide-binding prot 30.2 37 0.0013 37.0 4.4 34 416-449 19-53 (262)
390 1yrb_A ATP(GTP)binding protein 30.1 40 0.0014 36.3 4.6 33 417-450 16-48 (262)
391 3kjh_A CO dehydrogenase/acetyl 30.0 36 0.0012 36.2 4.1 32 418-449 3-34 (254)
392 1g8p_A Magnesium-chelatase 38 30.0 18 0.00061 41.0 1.8 19 415-433 45-63 (350)
393 4eaq_A DTMP kinase, thymidylat 29.9 40 0.0014 36.3 4.5 35 414-449 25-59 (229)
394 1bg2_A Kinesin; motor protein, 29.8 33 0.0011 39.3 4.0 23 409-431 70-94 (325)
395 2if2_A Dephospho-COA kinase; a 29.8 27 0.00091 36.3 3.0 18 417-434 3-20 (204)
396 4e22_A Cytidylate kinase; P-lo 29.8 29 0.00099 37.9 3.4 21 413-433 25-45 (252)
397 1e4v_A Adenylate kinase; trans 29.6 31 0.0011 36.3 3.5 19 417-435 2-20 (214)
398 1in4_A RUVB, holliday junction 29.5 31 0.0011 39.3 3.8 18 416-433 52-69 (334)
399 3tqc_A Pantothenate kinase; bi 29.4 65 0.0022 36.8 6.3 17 417-433 94-110 (321)
400 3fht_A ATP-dependent RNA helic 29.4 1.2E+02 0.0042 34.5 8.9 64 442-511 265-340 (412)
401 1w36_B RECB, exodeoxyribonucle 29.4 59 0.002 43.8 6.9 52 416-467 17-80 (1180)
402 1g41_A Heat shock protein HSLU 29.4 26 0.0009 41.9 3.2 18 415-432 50-67 (444)
403 3cf2_A TER ATPase, transitiona 29.3 51 0.0018 42.4 6.0 57 369-432 199-255 (806)
404 3be4_A Adenylate kinase; malar 29.2 34 0.0012 36.2 3.8 20 415-434 5-24 (217)
405 1ukz_A Uridylate kinase; trans 29.1 31 0.0011 35.7 3.4 18 416-433 16-33 (203)
406 1jjv_A Dephospho-COA kinase; P 29.1 26 0.00088 36.6 2.7 19 417-435 4-22 (206)
407 3q9l_A Septum site-determining 29.1 40 0.0014 36.3 4.4 31 419-449 7-37 (260)
408 2vli_A Antibiotic resistance p 29.1 25 0.00084 35.7 2.5 20 415-434 5-24 (183)
409 3tlx_A Adenylate kinase 2; str 28.6 30 0.001 37.5 3.3 22 414-435 28-49 (243)
410 3i5x_A ATP-dependent RNA helic 28.4 1.2E+02 0.0042 36.6 9.1 67 441-513 337-418 (563)
411 2dhr_A FTSH; AAA+ protein, hex 28.1 37 0.0013 41.3 4.2 52 369-433 26-82 (499)
412 1ypw_A Transitional endoplasmi 28.0 43 0.0015 43.2 5.0 57 369-432 199-255 (806)
413 3umf_A Adenylate kinase; rossm 27.9 34 0.0012 36.8 3.5 22 414-435 28-49 (217)
414 4f4c_A Multidrug resistance pr 27.9 26 0.00089 47.8 3.1 19 413-431 1103-1121(1321)
415 3tif_A Uncharacterized ABC tra 27.9 28 0.00094 37.8 2.8 19 413-431 29-47 (235)
416 2bbw_A Adenylate kinase 4, AK4 27.9 28 0.00094 37.7 2.8 20 414-433 26-45 (246)
417 2iut_A DNA translocase FTSK; n 27.8 48 0.0016 41.0 5.1 27 414-440 213-239 (574)
418 4dyq_A Gene 1 protein; GP1, oc 27.6 48 0.0017 33.0 4.3 65 1296-1361 13-79 (140)
419 2o8x_A Probable RNA polymerase 27.6 25 0.00085 29.9 1.9 50 1296-1345 16-66 (70)
420 2y65_A Kinesin, kinesin heavy 27.6 38 0.0013 39.5 4.0 23 409-431 77-101 (365)
421 2cbz_A Multidrug resistance-as 27.5 21 0.00072 38.8 1.7 19 413-431 29-47 (237)
422 2h58_A Kinesin-like protein KI 27.5 38 0.0013 38.9 4.0 24 408-431 72-97 (330)
423 4a14_A Kinesin, kinesin-like p 27.4 38 0.0013 39.1 4.0 23 409-431 76-100 (344)
424 1htw_A HI0065; nucleotide-bind 27.4 37 0.0013 34.6 3.4 20 413-432 31-50 (158)
425 1t5c_A CENP-E protein, centrom 27.2 39 0.0013 39.2 4.0 23 409-431 70-94 (349)
426 2vvg_A Kinesin-2; motor protei 27.2 39 0.0013 39.2 4.0 23 409-431 82-106 (350)
427 2nr8_A Kinesin-like protein KI 27.2 39 0.0013 39.3 4.0 24 408-431 95-120 (358)
428 3b6u_A Kinesin-like protein KI 27.2 39 0.0013 39.6 4.0 23 409-431 94-118 (372)
429 3f9v_A Minichromosome maintena 27.2 24 0.00083 43.9 2.4 16 417-432 329-344 (595)
430 3lv8_A DTMP kinase, thymidylat 27.0 62 0.0021 35.2 5.4 36 414-449 26-62 (236)
431 3vkg_A Dynein heavy chain, cyt 27.0 51 0.0017 48.7 5.8 40 394-433 881-924 (3245)
432 1goj_A Kinesin, kinesin heavy 26.9 37 0.0013 39.4 3.8 23 409-431 73-97 (355)
433 2p5t_B PEZT; postsegregational 26.8 19 0.00066 39.3 1.3 19 415-433 32-50 (253)
434 1v8k_A Kinesin-like protein KI 26.8 43 0.0015 39.7 4.2 23 409-431 147-171 (410)
435 3dc4_A Kinesin-like protein NO 26.7 34 0.0012 39.6 3.4 23 409-431 87-111 (344)
436 3lre_A Kinesin-like protein KI 26.6 38 0.0013 39.4 3.7 23 409-431 98-122 (355)
437 2jeo_A Uridine-cytidine kinase 26.5 29 0.001 37.5 2.6 22 413-434 23-44 (245)
438 1x88_A Kinesin-like protein KI 26.5 40 0.0014 39.3 3.9 24 408-431 80-105 (359)
439 3pxi_A Negative regulator of g 26.5 44 0.0015 42.6 4.7 25 415-440 201-225 (758)
440 4tmk_A Protein (thymidylate ki 26.4 65 0.0022 34.4 5.3 36 414-449 2-38 (213)
441 3v9p_A DTMP kinase, thymidylat 26.4 51 0.0017 35.7 4.5 37 413-449 23-63 (227)
442 3gbj_A KIF13B protein; kinesin 26.4 41 0.0014 39.1 3.9 24 408-431 84-109 (354)
443 2zfi_A Kinesin-like protein KI 26.2 41 0.0014 39.2 4.0 24 408-431 81-106 (366)
444 2grj_A Dephospho-COA kinase; T 26.1 38 0.0013 35.6 3.4 20 416-435 13-32 (192)
445 4f4c_A Multidrug resistance pr 26.0 23 0.00079 48.3 2.0 40 503-542 570-609 (1321)
446 1t5i_A C_terminal domain of A 25.9 1.1E+02 0.0039 30.9 6.9 79 425-511 15-105 (172)
447 3end_A Light-independent proto 25.8 55 0.0019 36.5 4.9 35 415-449 41-75 (307)
448 3sr0_A Adenylate kinase; phosp 25.7 41 0.0014 35.8 3.6 19 417-435 2-20 (206)
449 3sqw_A ATP-dependent RNA helic 25.6 1.4E+02 0.0048 36.5 8.9 67 441-513 286-367 (579)
450 3iqw_A Tail-anchored protein t 25.5 53 0.0018 37.7 4.7 35 416-450 17-51 (334)
451 1u0j_A DNA replication protein 25.5 58 0.002 36.3 4.8 32 402-433 85-122 (267)
452 1hv8_A Putative ATP-dependent 25.5 80 0.0027 35.3 6.2 65 441-511 236-312 (367)
453 3cwq_A Para family chromosome 25.4 60 0.002 34.2 4.8 36 419-455 5-42 (209)
454 3fgn_A Dethiobiotin synthetase 25.4 57 0.0019 35.9 4.7 35 417-451 28-63 (251)
455 2ghi_A Transport protein; mult 25.3 24 0.00083 38.9 1.7 19 413-431 44-62 (260)
456 2xb4_A Adenylate kinase; ATP-b 25.3 42 0.0014 35.7 3.5 19 417-435 2-20 (223)
457 2heh_A KIF2C protein; kinesin, 25.3 43 0.0015 39.4 3.9 23 409-431 127-151 (387)
458 4etp_A Kinesin-like protein KA 25.1 48 0.0016 39.2 4.3 25 408-432 132-158 (403)
459 1wp9_A ATP-dependent RNA helic 24.9 1.4E+02 0.0049 34.4 8.5 82 424-511 340-443 (494)
460 3nh6_A ATP-binding cassette SU 24.9 29 0.00099 39.5 2.3 19 413-431 78-96 (306)
461 1sgw_A Putative ABC transporte 24.8 25 0.00087 37.7 1.7 19 413-431 33-51 (214)
462 2p67_A LAO/AO transport system 24.8 56 0.0019 37.4 4.8 36 414-449 55-90 (341)
463 3cob_A Kinesin heavy chain-lik 24.8 41 0.0014 39.3 3.5 24 408-431 71-96 (369)
464 1cp2_A CP2, nitrogenase iron p 24.8 61 0.0021 35.1 4.9 32 418-449 4-35 (269)
465 1a7j_A Phosphoribulokinase; tr 24.6 34 0.0012 38.4 2.8 18 416-433 6-23 (290)
466 1vht_A Dephospho-COA kinase; s 24.6 34 0.0012 36.0 2.7 20 416-435 5-24 (218)
467 3ea0_A ATPase, para family; al 24.6 60 0.002 34.5 4.7 31 419-449 9-40 (245)
468 1uj2_A Uridine-cytidine kinase 24.3 34 0.0012 37.1 2.7 17 417-433 24-40 (252)
469 4akg_A Glutathione S-transfera 24.2 36 0.0012 49.6 3.5 22 412-433 1264-1285(2695)
470 3u06_A Protein claret segregat 24.1 47 0.0016 39.4 4.0 24 408-431 130-155 (412)
471 1ye8_A Protein THEP1, hypothet 24.1 42 0.0014 34.7 3.2 16 417-432 2-17 (178)
472 2afh_E Nitrogenase iron protei 24.1 63 0.0022 35.6 4.9 32 418-449 5-36 (289)
473 2oze_A ORF delta'; para, walke 24.1 68 0.0023 35.4 5.2 35 415-449 34-71 (298)
474 2xau_A PRE-mRNA-splicing facto 24.0 65 0.0022 41.3 5.6 59 1183-1243 490-550 (773)
475 3ice_A Transcription terminati 23.9 94 0.0032 36.8 6.3 32 403-434 159-193 (422)
476 1mv5_A LMRA, multidrug resista 23.9 23 0.00079 38.6 1.2 19 413-431 26-44 (243)
477 3pey_A ATP-dependent RNA helic 23.9 89 0.003 35.4 6.2 66 442-513 242-319 (395)
478 2pze_A Cystic fibrosis transme 23.7 36 0.0012 36.7 2.7 19 413-431 32-50 (229)
479 2wbe_C Bipolar kinesin KRP-130 23.7 42 0.0014 39.3 3.4 23 409-431 93-117 (373)
480 3gfo_A Cobalt import ATP-bindi 23.7 35 0.0012 38.0 2.7 19 413-431 32-50 (275)
481 2ff7_A Alpha-hemolysin translo 23.6 37 0.0013 37.2 2.8 19 413-431 33-51 (247)
482 1q3t_A Cytidylate kinase; nucl 23.3 54 0.0018 35.1 4.0 21 414-434 15-35 (236)
483 2owm_A Nckin3-434, related to 23.3 49 0.0017 39.6 4.0 24 408-431 128-153 (443)
484 2woj_A ATPase GET3; tail-ancho 23.3 62 0.0021 37.4 4.7 35 417-451 20-56 (354)
485 3t0q_A AGR253WP; kinesin, alph 23.2 44 0.0015 38.7 3.4 25 408-432 77-103 (349)
486 3qks_A DNA double-strand break 23.1 49 0.0017 34.9 3.5 23 417-440 25-47 (203)
487 3ake_A Cytidylate kinase; CMP 23.1 50 0.0017 34.1 3.6 18 417-434 4-21 (208)
488 2qm8_A GTPase/ATPase; G protei 23.1 64 0.0022 36.9 4.8 37 413-449 53-89 (337)
489 1b0u_A Histidine permease; ABC 22.8 29 0.00099 38.4 1.7 19 413-431 30-48 (262)
490 3aez_A Pantothenate kinase; tr 22.7 46 0.0016 37.8 3.5 21 413-433 88-108 (312)
491 2pcj_A ABC transporter, lipopr 22.7 39 0.0013 36.3 2.7 19 413-431 28-46 (224)
492 3bfv_A CAPA1, CAPB2, membrane 22.7 61 0.0021 35.8 4.4 34 416-449 83-117 (271)
493 1vpl_A ABC transporter, ATP-bi 22.3 30 0.001 38.2 1.7 19 413-431 39-57 (256)
494 4g1u_C Hemin import ATP-bindin 22.3 40 0.0014 37.4 2.7 19 413-431 35-53 (266)
495 2ixe_A Antigen peptide transpo 22.3 30 0.001 38.4 1.7 19 413-431 43-61 (271)
496 1ltq_A Polynucleotide kinase; 22.2 35 0.0012 37.8 2.3 17 417-433 4-20 (301)
497 2yz2_A Putative ABC transporte 22.2 30 0.001 38.3 1.7 19 413-431 31-49 (266)
498 1g6h_A High-affinity branched- 22.2 40 0.0014 37.0 2.8 19 413-431 31-49 (257)
499 1ji0_A ABC transporter; ATP bi 22.2 41 0.0014 36.6 2.8 19 413-431 30-48 (240)
500 2zu0_C Probable ATP-dependent 22.2 37 0.0013 37.6 2.4 19 413-431 44-62 (267)
No 1
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.2e-149 Score=1468.02 Aligned_cols=969 Identities=41% Similarity=0.679 Sum_probs=783.5
Q ss_pred cccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEE
Q 039491 368 QQKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAV 447 (1379)
Q Consensus 368 ~~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raI 447 (1379)
..++.|+++.+.+..+.+|.+++|+++..|||+|+++|.+||+++.+|++++|+||||||||++|+++|...+..+.++|
T Consensus 7 ~~~~~wa~~~~~~~~~~~f~~l~~~~~~~~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vl 86 (997)
T 4a4z_A 7 PVKKEWAHVVDLNHKIENFDELIPNPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTI 86 (997)
T ss_dssp --CCCSEEECCTTCCCTTHHHHCSSCSCCCSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEE
T ss_pred cccccccchhcccccccchhhhhHhHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEE
Confidence 35779999988888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecchHHHHHHHHHHHhccc---cEEEEecCcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchh
Q 039491 448 YTAPIKTISNQKYRDFSGKF---DVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGV 524 (1379)
Q Consensus 448 ylsPtkaLsnQk~~~~~~~f---~VglltGdv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~ 524 (1379)
|++|+++|++|++++|++.| ++++++|+.+.+++++|+||||++|.++++++...++++++|||||||++.+++||.
T Consensus 87 vl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~ 166 (997)
T 4a4z_A 87 YTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGV 166 (997)
T ss_dssp EEESCGGGHHHHHHHHHTTC--CCEEEECSSCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTC
T ss_pred EEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHH
Confidence 99999999999999999987 899999999999999999999999999999998889999999999999999999999
Q ss_pred HHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeecc-CcccchhhHHHH
Q 039491 525 VWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCE-NEAFIPQGWKAA 603 (1379)
Q Consensus 525 v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d-~~~f~~~~~~~~ 603 (1379)
+|+++++++|+++++|+||||++|..+|++|++..+..+++++.+..||+|++++++....++.+++ ...|...++..+
T Consensus 167 ~~e~ii~~l~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 246 (997)
T 4a4z_A 167 VWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKH 246 (997)
T ss_dssp CHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHH
T ss_pred HHHHHHHhcccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHH
Confidence 9999999999999999999999999999999999988999999999999999999999888898888 778888888877
Q ss_pred HHHHHhhccccccCCCCCCCCCCCCccccccc-ccCC-CCCCCCC-CccccccccCCCCCCC-----cccccchhHHHHH
Q 039491 604 KDAYKRKNLSAASGATGSYAGASSPRDGARAQ-KREH-PNRGKQN-KHSVVGIKNSGGSQNN-----WGLRRSEVSIWLT 675 (1379)
Q Consensus 604 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~gr~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 675 (1379)
...+.....................+.+.++. .+.. ..+|+++ +...++..++.+.... ..........+..
T Consensus 247 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (997)
T 4a4z_A 247 KEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPE 326 (997)
T ss_dssp HHHHC-----------------------------------------------------------------CCCCTTHHHH
T ss_pred HHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHH
Confidence 76655432211100000000000000000000 0000 0000000 0000000000000000 0001124566888
Q ss_pred HHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEec
Q 039491 676 LINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHH 755 (1379)
Q Consensus 676 Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhH 755 (1379)
++..+...+..++||||+|++.|+.++..|...++++..++..++.++++.+.++..+|+.+|++..+..++.+||++||
T Consensus 327 li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H 406 (997)
T 4a4z_A 327 IVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHH 406 (997)
T ss_dssp HHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEEC
T ss_pred HHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeec
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEE
Q 039491 756 AGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVV 835 (1379)
Q Consensus 756 ggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vI 835 (1379)
|||++.+|+.|+++|++|.++|||||+++++|||+|+++|||.+..+||+..++|+++.+|+||+|||||+|.+..|+||
T Consensus 407 ~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi 486 (997)
T 4a4z_A 407 GGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVI 486 (997)
T ss_dssp TTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHhcCCCcccccccccHHHHHHHHhhccccHHHHHhhChhhHHhcCCcHHHHHHHHHHHcCCCCc
Q 039491 836 VLCRDEIPGESDLKHIIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKT 915 (1379)
Q Consensus 836 il~~~~~~~~~~l~~li~g~~~~L~S~f~lty~miLnLlr~e~~~~e~~l~~SF~e~~~~~~~~~~~~~l~~~l~~~~~~ 915 (1379)
+++.++.++...+++++.+.++++.|+|+++|||++|+++++..++++|+++||.+|+.....+..++.+ .++++++..
T Consensus 487 ~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l-~~l~~~~~~ 565 (997)
T 4a4z_A 487 VMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQI-KVLQEELQT 565 (997)
T ss_dssp EECCSSCCCHHHHHHHHHSCCCCCCCCCCCCHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHHH-HHHHHHHHC
T ss_pred EecCCCcchHHHHHHHhcCCCcccccccccchHHHHHHHhhccccHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHH
Confidence 9997666688999999999999999999999999999999999999999999999999999999999988 877776655
Q ss_pred cc---ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhcCCCceEEEecCCCCCcceEEEEecCCCCCCceEEEE
Q 039491 916 IE---CIKGEPAIEEYYDMYYEAEKYNNQITEAFMQS--AHQFLMPGRVLFVKSQTGQDHLLGAVVKAPSANNKEYIVML 990 (1379)
Q Consensus 916 i~---c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~Grlv~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~ 990 (1379)
+. |..|..++.+||+++.++.++++++.+.+.++ ++++|++||||.|++ ...+++||||++....+ ..+.++|
T Consensus 566 ~~~~~c~~c~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~gr~v~~~~-~~~~~~~~~v~~~~~~~-~~~~~~v 643 (997)
T 4a4z_A 566 IEYKSCEICDNDIEKFLELMLAYKEATVNLMQEMVKSPSILHILKEGRLVAFRD-PNDCLKLGFVFKVSLKD-AVCVIMT 643 (997)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHTTSTTHHHHTCTTEEEEEEC-TTCCEEEEEEEEEETTT-TEEEEEC
T ss_pred hhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhcCHhHHhhCCCCCEEEEec-CCCCeeEEEEEeeccCC-CCCceEE
Confidence 55 44556789999999999999999887755544 899999999999987 44467899999975432 3457777
Q ss_pred EcCCCCCCcccccCCC-CCCCCCCcccccCCCCCceeEeecccccccccceeeeecCCCCccCCccceeecccccccccc
Q 039491 991 LKPDLPSASETSLDKK-SGDFSEGYFVIPKSKRGLEEEYCGSVSHRKGSGVINIKLPYHGAAAGVSYEVRGIDKKELLCI 1069 (1379)
Q Consensus 991 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i 1069 (1379)
++.............| .+.++.+.. .+| .......+.+..++++.|.+|
T Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~--~~~~~~~~~~~~~~~~~~~~~ 693 (997)
T 4a4z_A 644 FTKPYKLPNGEPNHLIYFPKADGYRR----------------------------RNF--PKFQKTDFYMEEVPVTAIEVI 693 (997)
T ss_dssp -CCCCC----------CCTTCHHHHH----------------------------HHC--CCCCCCCCCEEEEECC-CCEE
T ss_pred EeccccccccCccccCCCcccccccc----------------------------ccc--CcccCCceEEEEeccchhhhh
Confidence 7653222110000000 000000000 011 112345667777888888888
Q ss_pred ccccccccccCccCchhHHHHHHHHHHHHHhccCCCCCCCCCChhhhcccCchhHHHHHHHHHHHHHHHHhCCCCCCCCH
Q 039491 1070 CNCKIKIDQVGLLEDVSSAAFSKTVQQLLVLKSDEKKYPQALDPVKDLKLKDMNLVEAYYKWAGLLRKMAANKCHGCIKL 1149 (1379)
Q Consensus 1070 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~c~~~ 1149 (1379)
++..++++..++.. ...++.....+++.+... .|.++|++++++++.++.+...+++.++.++.+||||.||++
T Consensus 694 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (997)
T 4a4z_A 694 TKRKFAAPLGKVIK-KDVAALNEFNAETNNILD-----GKTLKEAINIEKQGLKIHQILLDRTNIRDEIFKLKSIKCPNL 767 (997)
T ss_dssp EEEECC-CHHHHHH-TCHHHHHHHHHHHHHHHH-----SCCCCCC------CCHHHHHHHHHHHHHHC------------
T ss_pred hcccccCChHhhhc-CCHHHHHHHHHHHHHHhc-----cCCCCchhhcccccHHHHHHHHHHHHHHHHHHhCCCCCCCCH
Confidence 88777765333332 223344444444444332 157899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcHHhhhchhHHHHHHHHHhHcCcccCCCccchhhHHhhhccCCchHHHHHHhhhcC
Q 039491 1150 EEHMKLTKENKRHKDEVNTLKFQMSDEALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQ 1229 (1379)
Q Consensus 1150 ~~h~~~~~~~~~l~~~i~~l~~~ls~~~l~l~~e~~~r~~VL~~LgyID~~~~v~lKGrvAceI~s~~EL~lTEll~~n~ 1229 (1379)
++||.+++++++++++++.|+++++++++.++|||++|++||++|||||++++||+||||||||+|++||++|||||+|+
T Consensus 768 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~~~v~~kgr~a~~i~~~~el~~te~~~~~~ 847 (997)
T 4a4z_A 768 SQHIVPKFKAHVIKKKIEELYHLMSDQNLSLLPDYEKRLAVLKDTEFIDQNHNVLLKGRVACEINSGYELVLTELILDNF 847 (997)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHTTSBCTTCCBCHHHHHHTTCCSSCHHHHHHHHHSSG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCcCCCCcccHHhHHHhhhcCccHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHhheeeeeccC--CCCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCCCh--hhhhhcCCCccHHHHHH
Q 039491 1230 LDDLEPEEAVAIMSAFVFQQRN--TSEPSLTPKLSVAKERLYNTAIRLGELQAHFKVQIDP--EEYARDNLKFGLVEVVY 1305 (1379)
Q Consensus 1230 l~~l~p~eiaAlLS~fV~q~k~--~~~p~l~~~L~~~~~~i~~ia~~i~~~~~~~~v~~~~--~~~~~~~~~f~l~~vvy 1305 (1379)
|++|+|+||||||||||||+|+ +++|.++++|+++++++.++|.+|++++.+|+++++. ++|+++ ++||||+|||
T Consensus 848 ~~~l~~~~~~a~ls~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~v~ 926 (997)
T 4a4z_A 848 LGSFEPEEIVALLSVFVYEGKTREEEPPIVTPRLAKGKQRIEEIYKKMLCVFNTHQIPLTQDEAEFLDR-KRFAMMNVVY 926 (997)
T ss_dssp GGGCCHHHHHHHHGGGSCCCCCSSCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHGGGS-CTTTTHHHHH
T ss_pred ccCCCHHHHHHHHhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccchhhhccC-CChHHHHHHH
Confidence 9999999999999999999998 6678999999999999999999999999999999973 789998 9999999999
Q ss_pred HHhCCCCHHHHHhhcCCCCCceehhhhhHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhcCCCeeeeccccc
Q 039491 1306 EWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIMGNSALYKKMETASNAIKRDIVFAASLYI 1376 (1379)
Q Consensus 1306 eWA~G~sF~~I~~~Tdv~EG~IVR~i~RLdEl~rqv~~Aa~~igd~~L~~Km~~a~~~IkRdIVf~~SLY~ 1376 (1379)
+||+|+||++||++||++||||||||+||+|+||||++||++|||++|++||++|+++|||||||++||||
T Consensus 927 ~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~~~q~~~aa~~~g~~~l~~k~~~a~~~i~R~iv~~~slyl 997 (997)
T 4a4z_A 927 EWARGLSFKEIMEMSPEAEGTVVRVITWLDEICREVKTASIIIGNSTLHMKMSRAQELIKRDIVFAASLYL 997 (997)
T ss_dssp HHHHTCCHHHHHHTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCGGGGCCCTTC
T ss_pred HHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeeecccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997
No 2
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-147 Score=1445.56 Aligned_cols=920 Identities=38% Similarity=0.656 Sum_probs=804.0
Q ss_pred HHhhc-hhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHh
Q 039491 386 FHELV-PDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFS 464 (1379)
Q Consensus 386 ~~~l~-p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~ 464 (1379)
|.+.+ |.++..|||+|+++|++|++++.+|++++|+||||||||++|+++|+..+.++.++||++|+++|++|++++|+
T Consensus 71 ~~~~~~p~~~~~~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 71 IAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp GGGCCCSSCSCCCSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH
T ss_pred CCcccChhhHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHH
Confidence 45544 55677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-cEEEEecCcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEec
Q 039491 465 GKF-DVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLS 543 (1379)
Q Consensus 465 ~~f-~VglltGdv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLS 543 (1379)
+.| ++|+++||.+++++++|+|||||+|+++++++...++++++|||||||++.+.+||.+|+.++.++|+++++|+||
T Consensus 151 ~~~~~vglltGd~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il~LS 230 (1010)
T 2xgj_A 151 AEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLS 230 (1010)
T ss_dssp HHHSCEEEECSSCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEE
T ss_pred HHhCCEEEEeCCCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEEEEc
Confidence 999 9999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecC--ceeeecc-CcccchhhHHHHHHHHHhhccccccCCCC
Q 039491 544 ATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSG--EFYKVCE-NEAFIPQGWKAAKDAYKRKNLSAASGATG 620 (1379)
Q Consensus 544 ATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~--~l~~i~d-~~~f~~~~~~~~~~~l~~~~~~~~~~~~~ 620 (1379)
||++|..+|++|++.....+++++.++.||+|++++++..+ .++.+++ ...|...++...+..+..........
T Consensus 231 ATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--- 307 (1010)
T 2xgj_A 231 ATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNS--- 307 (1010)
T ss_dssp CCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------
T ss_pred CCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccc---
Confidence 99999999999999888889999999999999999998743 6777777 66777777766544322210000000
Q ss_pred CCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHH
Q 039491 621 SYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDK 700 (1379)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~ 700 (1379)
. ...|+.....+ ++. ........+..++..+...+..++||||+|++.|+.
T Consensus 308 ------~------------~~~g~~~~~~k-----~~~------~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~ 358 (1010)
T 2xgj_A 308 ------T------------DSRGKKGQTYK-----GGS------AKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEE 358 (1010)
T ss_dssp --------------------------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHH
T ss_pred ------c------------ccccccccccc-----ccc------ccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHH
Confidence 0 00000000000 000 000014457778888887777899999999999999
Q ss_pred HHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEe
Q 039491 701 LADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFS 780 (1379)
Q Consensus 701 lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVA 780 (1379)
++..|...++....++..++.++.+.+..+.++|+.++++..+.+++.+||++|||||++.+|+.++++|++|.++||||
T Consensus 359 la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVA 438 (1010)
T 2xgj_A 359 LALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFA 438 (1010)
T ss_dssp HHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHHhcCCCccc
Q 039491 781 TETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLE 860 (1379)
Q Consensus 781 Tetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li~g~~~~L~ 860 (1379)
|+++++|||+|++++||++..+||+.+++|+++.+|+||+|||||+|.|..|.||+++++.. +...+++++.+.+++|.
T Consensus 439 T~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~-e~~~~~~l~~~~~~~l~ 517 (1010)
T 2xgj_A 439 TETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM-EPQVAKGMVKGQADRLD 517 (1010)
T ss_dssp EGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCC-CHHHHHHHHSCCCCCCC
T ss_pred ehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCC-CHHHHHHHHhCCCcccc
Confidence 99999999999999999999999999999999999999999999999998999999998765 77889999999999999
Q ss_pred ccccccHHHHHHHHhhccccHHHHHhhChhhHHhcCCcHHHHHHHHHHHcCCCCcccccCCcchHHHHHHHHHHHHHHHH
Q 039491 861 SQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTIECIKGEPAIEEYYDMYYEAEKYNN 940 (1379)
Q Consensus 861 S~f~lty~miLnLlr~e~~~~e~~l~~SF~e~~~~~~~~~~~~~l~~~l~~~~~~i~c~~~~~~~~~~~~~~~~~~~~~~ 940 (1379)
|+|+++|+|+||+++.+.+++++|+++||++|+.+...+.+++++ .+++.++..+. .....++.+|+++..++..+++
T Consensus 518 s~f~~~~~~ilnll~~~~~~~e~ll~rsf~~~~~~~~~~~~~~~~-~~l~~~~~~~~-~~~~~~~~~y~~~~~~~~~~~~ 595 (1010)
T 2xgj_A 518 SAFHLGYNMILNLMRVEGISPEFMLEHSFFQFQNVISVPVMEKKL-AELKKDFDGIE-VEDEENVKEYHEIEQAIKGYRE 595 (1010)
T ss_dssp CCCCCCHHHHHHHHHSSSCCHHHHHHHCHHHHHHHHHHHHHHHHC--CHHHHHHSSC-CCSCTHHHHHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHhcc-cCChhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 77777776665 3467889999999999999999
Q ss_pred HHHHHHHHH--HhhhcCCCceEEEecCCCCCcceEEEEecC----C-------CCCCceEEEEEcCCCCCCcccccCCC-
Q 039491 941 QITEAFMQS--AHQFLMPGRVLFVKSQTGQDHLLGAVVKAP----S-------ANNKEYIVMLLKPDLPSASETSLDKK- 1006 (1379)
Q Consensus 941 ~~~~~~~~~--~~~~l~~Grlv~~~~~~~~~~~~gv~~~~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~~~- 1006 (1379)
.+...+..+ .+++|+|||||.++.+++..++||||++.. . .....|+|++++.+.......+...+
T Consensus 596 ~~~~~~~~~~~~~~~l~~Gr~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 675 (1010)
T 2xgj_A 596 DVRQVVTHPANALSFLQPGRLVEISVNGKDNYGWGAVVDFAKRINKRNPSAVYTDHESYIVNVVVNTMYIDSPVNLLKPF 675 (1010)
T ss_dssp HHHHHHTSHHHHGGGCCTTEEEEEEETTTEEEEEEEEEEEEECCCSSCTTCCCCTTTTEEEEEEEEEEETTSCGGGCCTT
T ss_pred HHHHHHhccHHHHhhcCCCcEEEEEcCCCCcceeEEEEecccccCCCccccccccCCceeEEEEeecccccccccccccc
Confidence 999877766 899999999999987456678999999842 1 12356889998876322100000011
Q ss_pred CCCCCCCcccccCCCCCceeEeecccccccccceeeeecCCCCccCCccceeeccccccccccccccccccccCccCchh
Q 039491 1007 SGDFSEGYFVIPKSKRGLEEEYCGSVSHRKGSGVINIKLPYHGAAAGVSYEVRGIDKKELLCICNCKIKIDQVGLLEDVS 1086 (1379)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 1086 (1379)
.+..+....|++.+.++.+.+++++++++..++..++.+| . +++....
T Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~-~~~~~~~ 723 (1010)
T 2xgj_A 676 NPTLPEGIRPAEEGEKSICAVIPITLDSIKSIGNLRLYMP-------------------------------K-DIRASGQ 723 (1010)
T ss_dssp CCCCCTTCCBCCTTCCEEEEEEEECGGGEEEEEEEECCCC-------------------------------S-STTCSSS
T ss_pred ccccccccCCCCCCcCCceEEEEechhhcceeeeeeEecc-------------------------------c-ccCChHH
Confidence 1122333344445556667777777777777777777776 2 3444566
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCChhhhcccCchhHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 039491 1087 SAAFSKTVQQLLVLKSDEKKYPQALDPVKDLKLKDMNLVEAYYKWAGLLRKMAANKCHGCIKLEEHMKLTKENKRHKDEV 1166 (1379)
Q Consensus 1087 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~c~~~~~h~~~~~~~~~l~~~i 1166 (1379)
++.+.++++++.+.++++ .|.++|++++++++.++.+...+++.++++|.+||||.||++++||++++++.++++++
T Consensus 724 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 800 (1010)
T 2xgj_A 724 KETVGKSLREVNRRFPDG---IPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDM 800 (1010)
T ss_dssp HHHHHHHHHHHHHHSSSC---CCBCCTTTTSCCCCHHHHHHHHHHHHHHHHHTTSHHHHSSSHHHHHHHHHHC-CHHHHH
T ss_pred HHHHHHHHHHHHHhcccC---CcccCchhhhccccHHHHHHHHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHHHHHHH
Confidence 788888999998887765 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcH-HhhhchhHHHHHHHHHhHcCcccCCCccchhhHHhhhccCCchHHHHHHhhhcCCCCCCHHHHHHHhhee
Q 039491 1167 NTLKFQMSD-EALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEAVAIMSAF 1245 (1379)
Q Consensus 1167 ~~l~~~ls~-~~l~l~~e~~~r~~VL~~LgyID~~~~v~lKGrvAceI~s~~EL~lTEll~~n~l~~l~p~eiaAlLS~f 1245 (1379)
+.|++++++ +++.+++||++|++||++|||||++++||+||||||||+|+||||||||||+|+|++|+|+||||+||||
T Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~~~v~~kGr~a~~i~~~~el~~~e~~~~g~~~~l~p~~~aa~~s~~ 880 (1010)
T 2xgj_A 801 KQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCF 880 (1010)
T ss_dssp HHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSBCTTCCBCHHHHHHHTCCSSCHHHHHHHHHHTTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCcCCCCcccHHHHHHHHhcCccHHHHHHHHHcCccCCCCHHHHHHHHeee
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhcCCCccHHHHHHHHhCCCCHHHHHhhcCCCCC
Q 039491 1246 VFQQRNTSEPSLTPKLSVAKERLYNTAIRLGELQAHFKVQIDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEG 1325 (1379)
Q Consensus 1246 V~q~k~~~~p~l~~~L~~~~~~i~~ia~~i~~~~~~~~v~~~~~~~~~~~~~f~l~~vvyeWA~G~sF~~I~~~Tdv~EG 1325 (1379)
|||+|+++.|.+++.|+++++++.+++.+|+++|.+|++++++++|+++ ++||||+|||+||+|+||++||++||++||
T Consensus 881 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~v~~Wa~g~~~~~i~~~t~~~eG 959 (1010)
T 2xgj_A 881 AFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVES-FRHELMEVVYEWCRGATFTQICKMTDVYEG 959 (1010)
T ss_dssp HCCCCCSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHT-SCCTTHHHHHHHTTTCCHHHHTTSCSSCHH
T ss_pred EeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHhccc-CChHHHHHHHHHhCCCCHHHHHhcCCCCch
Confidence 9999998899999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred ceehhhhhHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhcCCCeeeeccccc
Q 039491 1326 LIVRTIVRLDETCREFRNAAAIMGNSALYKKMETASNAIKRDIVFAASLYI 1376 (1379)
Q Consensus 1326 ~IVR~i~RLdEl~rqv~~Aa~~igd~~L~~Km~~a~~~IkRdIVf~~SLY~ 1376 (1379)
|||||||||+|+||||++||++|||++|++||++|+++|||||||++||||
T Consensus 960 ~~vR~~~rl~ell~q~~~a~~~~g~~~l~~~~~~a~~~i~R~iv~~~sly~ 1010 (1010)
T 2xgj_A 960 SLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVLKLIHRDIVSAGSLYL 1010 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCGGGGCCCC-C
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhccCCeEecccccC
Confidence 999999999999999999999999999999999999999999999999997
No 3
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-149 Score=1473.94 Aligned_cols=914 Identities=38% Similarity=0.657 Sum_probs=767.8
Q ss_pred hhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEE
Q 039491 392 DLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVG 470 (1379)
Q Consensus 392 ~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~Vg 470 (1379)
..+..|||+|+++|++||+++.+|++++|+||||||||++|+++|+.++.++.++||++||++|++|++++|++.| +||
T Consensus 176 ~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~Vg 255 (1108)
T 3l9o_A 176 NEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVG 255 (1108)
T ss_dssp SCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCcc
Confidence 3466799999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEecCcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChH
Q 039491 471 LLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTV 550 (1379)
Q Consensus 471 lltGdv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~ 550 (1379)
+++|+.+++++++|+||||++|+++++++...++++++|||||||++.+.+||..|+.++.++++++|+|+||||++|..
T Consensus 256 lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~ 335 (1108)
T 3l9o_A 256 LMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAM 335 (1108)
T ss_dssp EECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCH
T ss_pred EEeCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEEEEcCCCCCHH
Confidence 99999999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEccCCCCcCceEEEeecC--ceeeecc-CcccchhhHHHHHHHHHhhccccccCCCCCCCCCCC
Q 039491 551 EFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSG--EFYKVCE-NEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASS 627 (1379)
Q Consensus 551 efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~--~l~~i~d-~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 627 (1379)
+|++|++.....++.++....+|+|++++++... .++.+++ ...|...++...+..+.......... .
T Consensus 336 e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~ 406 (1108)
T 3l9o_A 336 EFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNS---------T 406 (1108)
T ss_dssp HHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC--------------------
T ss_pred HHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccc---------c
Confidence 9999999999999999999999999999998753 5666666 66777777766553332211000000 0
Q ss_pred CcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhc
Q 039491 628 PRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSG 707 (1379)
Q Consensus 628 ~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~ 707 (1379)
..+ ++...... ++ .........+..++..+...+..++||||+|++.|+.++..|..
T Consensus 407 ~~~------------~~~~~~~~-----~~------~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~ 463 (1108)
T 3l9o_A 407 DSR------------GKKGQTYK-----GG------SAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSK 463 (1108)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCS
T ss_pred ccc------------cccccccc-----cc------cccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHh
Confidence 000 00000000 00 00011255677888888888888999999999999999999998
Q ss_pred CCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEeccccccc
Q 039491 708 IDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMG 787 (1379)
Q Consensus 708 ~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~G 787 (1379)
.++.+..++..+..++...+..+..+|+.+|++..+.+++.+||++|||+|++.+|+.|+..|++|.++|||||+++++|
T Consensus 464 ~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~G 543 (1108)
T 3l9o_A 464 LDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIG 543 (1108)
T ss_dssp HHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSC
T ss_pred ccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcC
Confidence 88888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHHhcCCCcccccccccH
Q 039491 788 VNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQFRLTY 867 (1379)
Q Consensus 788 INiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li~g~~~~L~S~f~lty 867 (1379)
||+|++++||+...+||+..++++++.+|+||+|||||+|.+..|+||+++++.. +...+++++.+.+.+|.|+|+++|
T Consensus 544 IDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~-~~~~~~~l~~~~~~~L~S~f~~~y 622 (1108)
T 3l9o_A 544 LNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM-EPQVAKGMVKGQADRLDSAFHLGY 622 (1108)
T ss_dssp CCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC-CHHHHHHHHHCCCCCCCCCCCCCH
T ss_pred CCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc-CHHHHHHHhcCCCcccccccCCcH
Confidence 9999999999999999999999999999999999999999999999999998875 788999999999999999999999
Q ss_pred HHHHHHHhhccccHHHHHhhChhhHHhcCCcHHHHHHHHHHHcCCCCcccccCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 039491 868 IMILHLLRVEELKVEDMLKRSFAEFHSQKKLPEQQQLLMRKLAQPPKTIECIKGEPAIEEYYDMYYEAEKYNNQITEAFM 947 (1379)
Q Consensus 868 ~miLnLlr~e~~~~e~~l~~SF~e~~~~~~~~~~~~~l~~~l~~~~~~i~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1379)
||+|||++.+.+++++|+++||++|++...++.+++++ +++++++..+.+ ..+.++.+|+++..+++.+++.+...+.
T Consensus 623 ~~ilnll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 700 (1108)
T 3l9o_A 623 NMILNLMRVEGISPEFMLEHSFFQFQNVISVPVMEKKL-AELKKDFDGIEV-EDEENVKEYHEIEQAIKGYREDVRQVVT 700 (1108)
T ss_dssp HHHHHHHHSTTCCHHHHHHHSSHHHHHHHHHHHHHHHH-HHHHHHHTTCCC-TTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHhcccc-CchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999 999988888873 4578999999999999999999999887
Q ss_pred HH--HhhhcCCCceEEEecCCCCCcceEEEEecCCC-----------CCCceEEEEEcCCCCCCcccccCCC-CCCCCCC
Q 039491 948 QS--AHQFLMPGRVLFVKSQTGQDHLLGAVVKAPSA-----------NNKEYIVMLLKPDLPSASETSLDKK-SGDFSEG 1013 (1379)
Q Consensus 948 ~~--~~~~l~~Grlv~~~~~~~~~~~~gv~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 1013 (1379)
++ ++++|++||||.+++..+.+++||||++.... ....|++.+++.+.......++..+ .+..+..
T Consensus 701 ~~~~~~~~l~~G~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 780 (1108)
T 3l9o_A 701 HPANALSFLQPGRLVEISVNGKDNYGWGAVVDFAKRINKRNPSAVYTDHESYIVNVVVNTMYIDSPVNLLKPFNPTLPEG 780 (1108)
T ss_dssp SHHHHHHHCCTTEEEEECCTTCCEEEEEEEEEECCCC-----CCSSSSEEEEEECCCSTTCCSCCCSSCTTTTCCSGGGS
T ss_pred ChHHHHhhCCCCCEEEEecCCCcccceEEEEecccccccccccccCCCCCceeEEEEeccccccccccccccccccCCcc
Confidence 77 89999999999998722677899999986421 1245788888776432111110000 1111222
Q ss_pred cccccCCCCCceeEeecccccccccceeeeecCCCCccCCccceeeccccccccccccccccccccCccCchhHHHHHHH
Q 039491 1014 YFVIPKSKRGLEEEYCGSVSHRKGSGVINIKLPYHGAAAGVSYEVRGIDKKELLCICNCKIKIDQVGLLEDVSSAAFSKT 1093 (1379)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 1093 (1379)
..|+..+..+.+.+++++++++..++.+++.+| . +++....++.+.++
T Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~-~~~~~~~~~~~~~~ 828 (1108)
T 3l9o_A 781 IRPAEEGEKSICAVIPITLDSIKSIGNLRLYMP-------------------------------K-DIRASGQKETVGKS 828 (1108)
T ss_dssp SCCSCC---CCCCCCCEESSCEEEEEEEECCCC-------------------------------T-TTTSHHHHHHHHHH
T ss_pred ccCCCcccCCceEEEEechhheeeccceEEecC-------------------------------C-CcCCHHHHHHHHHH
Confidence 223333444556666666666666666666665 3 34555678889999
Q ss_pred HHHHHHhccCCCCCCCCCChhhhcccCchhHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039491 1094 VQQLLVLKSDEKKYPQALDPVKDLKLKDMNLVEAYYKWAGLLRKMAANKCHGCIKLEEHMKLTKENKRHKDEVNTLKFQM 1173 (1379)
Q Consensus 1094 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~c~~~~~h~~~~~~~~~l~~~i~~l~~~l 1173 (1379)
+.++.+.++.+ .|.++|++++++++.++.++..+++.++.+|.+||||.||++++||++++++.+|++++++|++++
T Consensus 829 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 905 (1108)
T 3l9o_A 829 LREVNRRFPDG---IPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKI 905 (1108)
T ss_dssp HHHHHHHCSSC---CTTHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHSSCTTCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC---CcccChhhhcccCCHHHHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887665 688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cH-HhhhchhHHHHHHHHHhHcCcccCCCccchhhHHhhhccCCchHHHHHHhhhcCCCCCCHHHHHHHhheeeeeccCC
Q 039491 1174 SD-EALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDDLEPEEAVAIMSAFVFQQRNT 1252 (1379)
Q Consensus 1174 s~-~~l~l~~e~~~r~~VL~~LgyID~~~~v~lKGrvAceI~s~~EL~lTEll~~n~l~~l~p~eiaAlLS~fV~q~k~~ 1252 (1379)
++ +++.++|||++|++||++|||||++++||+||||||||+|+||||+|||||+|+|++|+|+||||||||||||+|++
T Consensus 906 ~~~~~~~~~~~~~~~~~vL~~l~~~~~~~~v~~kgr~a~~i~~~~el~~~e~~~~~~~~~l~~~~~aa~~s~~v~~~~~~ 985 (1108)
T 3l9o_A 906 SESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCK 985 (1108)
T ss_dssp HC-CHHHHHHHHHHHHHHHHHHTSCTTTCCCSHHHHHHHC-CCTTHHHHHHHHHHHCCCSSCCTHHHHHTCC--------
T ss_pred HhhhhhHHHHHHHHHHHHHHHcCCcCCCCcCcHHhHHHHHhcCccHHHHHHHHHhCcccCCCHHHHHHHHhheeeecccC
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhcCCCccHHHHHHHHhCCCCHHHHHhhcCCCCCceehhhh
Q 039491 1253 SEPSLTPKLSVAKERLYNTAIRLGELQAHFKVQIDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIV 1332 (1379)
Q Consensus 1253 ~~p~l~~~L~~~~~~i~~ia~~i~~~~~~~~v~~~~~~~~~~~~~f~l~~vvyeWA~G~sF~~I~~~Tdv~EG~IVR~i~ 1332 (1379)
+.|.+++.|++++.++.++|.+|+++|.+|++++++++|+++ ++||||+|||+||+|+||++||++||++|||||||||
T Consensus 986 ~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~l~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~~ 1064 (1108)
T 3l9o_A 986 EAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVES-FRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFK 1064 (1108)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHH-HCCSCHHHHHHHHC----CCGGGTC--CHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHhccC-CChHHHHHHHHHhCCCCHHHHHhcCCCCchhhhhHHH
Confidence 889999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhcCCCeeeeccccc
Q 039491 1333 RLDETCREFRNAAAIMGNSALYKKMETASNAIKRDIVFAASLYI 1376 (1379)
Q Consensus 1333 RLdEl~rqv~~Aa~~igd~~L~~Km~~a~~~IkRdIVf~~SLY~ 1376 (1379)
||+|+||||++||++|||++|++||++|+++|||||||++||||
T Consensus 1065 rl~e~l~q~~~aa~~~g~~~l~~k~~~a~~~i~r~iv~~~slyl 1108 (1108)
T 3l9o_A 1065 RLEELVKELVDVANTIGNSSLKEKMEAVLKLIHRDIVSAGSLYL 1108 (1108)
T ss_dssp HHHHHHSCCCC----CCCHHHHHHHHHHHHHHHHHTCCCCCCC-
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCEEeeccccC
Confidence 99999999999999999999999999999999999999999997
No 4
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.3e-53 Score=580.43 Aligned_cols=408 Identities=25% Similarity=0.363 Sum_probs=316.6
Q ss_pred CCC-CCHHHHHHHHHH-HCCCcEEEEcCCCccHHHHHHHHHHHHHh-----------cCCcEEEecchHHHHHHHHHHHh
Q 039491 398 PFE-LDNFQKEAIYYL-ENGDSVFVAAHTSAGKTVVAEYAFALATK-----------HCTRAVYTAPIKTISNQKYRDFS 464 (1379)
Q Consensus 398 pFe-L~~~Q~eAI~~L-~~g~sVlV~ApTGSGKTlvae~aI~~~l~-----------~~~raIylsPtkaLsnQk~~~~~ 464 (1379)
+|+ |+++|.++++.+ ..++|++|+||||||||++|+++|+..+. .+.++||++|+|||++|++++|+
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 477 999999999986 56889999999999999999999999884 36789999999999999999999
Q ss_pred ccc-----cEEEEecCcccCC----CCceeeecHHHHHHHHhcCc--ccCCCccEEEEeccCCCCCccchhHHHHHHHH-
Q 039491 465 GKF-----DVGLLTGDVSLRP----EASCLIMTTEILRSMLYRGA--DIIRDIEWVIFDEVHYVNDIERGVVWEEVIIM- 532 (1379)
Q Consensus 465 ~~f-----~VglltGdv~in~----~a~IlV~TpEiL~smL~~~~--~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~- 532 (1379)
+.| +|+.+|||.+.++ .++|+|||||++..|++++. ..++++++|||||+|+++| +||.+||.++..
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~rl 234 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARA 234 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHHH
Confidence 876 7999999998765 48999999999999988754 3588999999999999988 799999988753
Q ss_pred ------cCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHH
Q 039491 533 ------LPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDA 606 (1379)
Q Consensus 533 ------Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~ 606 (1379)
+++++|+|+||||+||..++|+|++......++++.+.+|||||+++++... +.... ..
T Consensus 235 ~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~------~~~~~--~~------- 299 (1724)
T 4f92_B 235 IRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGIT------EKKAI--KR------- 299 (1724)
T ss_dssp HHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEEC------CCCHH--HH-------
T ss_pred HHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccC------Ccchh--hh-------
Confidence 5778999999999999999999999877778899999999999987654221 10000 00
Q ss_pred HHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHH-HHHHHH-hCC
Q 039491 607 YKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLT-LINKLS-KKS 684 (1379)
Q Consensus 607 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Li~~L~-~~~ 684 (1379)
...+.. +...+. ...
T Consensus 300 ---------------------------------------------------------------~~~~~~~~~~~v~~~~~ 316 (1724)
T 4f92_B 300 ---------------------------------------------------------------FQIMNEIVYEKIMEHAG 316 (1724)
T ss_dssp ---------------------------------------------------------------HHHHHHHHHHHHTTCCS
T ss_pred ---------------------------------------------------------------hHHHHHHHHHHHHHHhc
Confidence 000111 111111 223
Q ss_pred CCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHH--HHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHH
Q 039491 685 LLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCD--KAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIV 762 (1379)
Q Consensus 685 ~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~--~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~ 762 (1379)
.+++||||+||+.|+.+|..|.+....... ...+.. .........+........+.+++.+|||+|||||++.+
T Consensus 317 ~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~ 392 (1724)
T 4f92_B 317 KNQVLVFVHSRKETGKTARAIRDMCLEKDT----LGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVD 392 (1724)
T ss_dssp SCCEEEECSSTTTTHHHHHHHHHHHHHTTS----TTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHHHHhhccc----hhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHH
Confidence 569999999999999999988642100000 000000 00000000112233456789999999999999999999
Q ss_pred HHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcc--cccCCHHHHHHHhcccCCCCCCCcEEEEEEecC
Q 039491 763 KEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGRE--FRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRD 840 (1379)
Q Consensus 763 Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~--~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~ 840 (1379)
|..||++|++|.++|||||+|+|+|||+|+++|||.+++.||+.. +.++++.+|.||+|||||+|.|..|.+|++++.
T Consensus 393 R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~ 472 (1724)
T 4f92_B 393 RTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSH 472 (1724)
T ss_dssp HHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEES
T ss_pred HHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecc
Confidence 999999999999999999999999999999999999999999863 567999999999999999999999999999987
Q ss_pred CCCCHHHHHHHHhcCCCcccccccccHHHHHHHH-hhccc----cHHHHHhhChhh
Q 039491 841 EIPGESDLKHIIVGSATRLESQFRLTYIMILHLL-RVEEL----KVEDMLKRSFAE 891 (1379)
Q Consensus 841 ~~~~~~~l~~li~g~~~~L~S~f~lty~miLnLl-r~e~~----~~e~~l~~SF~e 891 (1379)
+ +...+..++. .+.+++|+|.......||.. -.+.+ +..++++.+|..
T Consensus 473 ~--~~~~~~~ll~-~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~ 525 (1724)
T 4f92_B 473 G--ELQYYLSLLN-QQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLY 525 (1724)
T ss_dssp T--TCCHHHHHTT-TCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHH
T ss_pred h--hHHHHHHHHc-CCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHH
Confidence 5 4456677766 45789999987766666643 22222 345667777654
No 5
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=5.1e-52 Score=567.23 Aligned_cols=405 Identities=24% Similarity=0.342 Sum_probs=315.4
Q ss_pred CCC-CCHHHHHHHHHHH-CCCcEEEEcCCCccHHHHHHHHHHHHHh--cCCcEEEecchHHHHHHHHHHHhccc------
Q 039491 398 PFE-LDNFQKEAIYYLE-NGDSVFVAAHTSAGKTVVAEYAFALATK--HCTRAVYTAPIKTISNQKYRDFSGKF------ 467 (1379)
Q Consensus 398 pFe-L~~~Q~eAI~~L~-~g~sVlV~ApTGSGKTlvae~aI~~~l~--~~~raIylsPtkaLsnQk~~~~~~~f------ 467 (1379)
+|+ |+|+|.+|++.+. .++|++|+||||||||++|++||+..+. ++.++||++|+|||++|++++|++.|
T Consensus 923 ~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~ 1002 (1724)
T 4f92_B 923 KFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNK 1002 (1724)
T ss_dssp TCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCC
T ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCC
Confidence 466 9999999999985 5678999999999999999999999885 46799999999999999999998765
Q ss_pred cEEEEecCcccC----CCCceeeecHHHHHHHHhcC--cccCCCccEEEEeccCCCCCccchhHHHHHHHHc-------C
Q 039491 468 DVGLLTGDVSLR----PEASCLIMTTEILRSMLYRG--ADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML-------P 534 (1379)
Q Consensus 468 ~VglltGdv~in----~~a~IlV~TpEiL~smL~~~--~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L-------p 534 (1379)
+|+.+|||.+.+ ..++|+|||||+|.+++.+. ...++++++||+||+|++++ +||.+|+.++..+ +
T Consensus 1003 ~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~~i~~~~~ 1081 (1724)
T 4f92_B 1003 KVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-ENGPVLEVICSRMRYISSQIE 1081 (1724)
T ss_dssp CEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHHHHHHTTS
T ss_pred EEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC-CCCccHHHHHHHHHHHHhhcC
Confidence 699999998754 45899999999999888763 45688999999999999988 6999999887643 5
Q ss_pred ccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhcccc
Q 039491 535 RHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSA 614 (1379)
Q Consensus 535 ~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~ 614 (1379)
+++|+|+||||++|..++++|++.. ...++++.+..||+||++++.... ... ......
T Consensus 1082 ~~~riI~lSATl~N~~dla~WL~~~-~~~~~~~~~~~RPvpL~~~i~~~~----~~~--------~~~~~~--------- 1139 (1724)
T 4f92_B 1082 RPIRIVALSSSLSNAKDVAHWLGCS-ATSTFNFHPNVRPVPLELHIQGFN----ISH--------TQTRLL--------- 1139 (1724)
T ss_dssp SCCEEEEEESCBTTHHHHHHHHTCC-STTEEECCGGGCSSCEEEEEEEEC----CCS--------HHHHHH---------
T ss_pred CCceEEEEeCCCCCHHHHHHHhCCC-CCCeEEeCCCCCCCCeEEEEEecc----CCC--------chhhhh---------
Confidence 7899999999999999999999865 457888999999999998875322 000 000000
Q ss_pred ccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCC
Q 039491 615 ASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFS 694 (1379)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~S 694 (1379)
.........+. .....+|+||||+|
T Consensus 1140 -----------------------------------------------------~~~~~~~~~i~--~~~~~~~~lVF~~s 1164 (1724)
T 4f92_B 1140 -----------------------------------------------------SMAKPVYHAIT--KHSPKKPVIVFVPS 1164 (1724)
T ss_dssp -----------------------------------------------------TTHHHHHHHHH--HHCSSSCEEEEESS
T ss_pred -----------------------------------------------------hhcchHHHHHH--HhcCCCCeeeeCCC
Confidence 00111222222 22446799999999
Q ss_pred hhHHHHHHHHhhcCCCCCchhhh---HHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhc
Q 039491 695 KNHCDKLADGMSGIDLTSSSEKS---EIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFC 771 (1379)
Q Consensus 695 rk~ce~lA~~L~~~~l~~~~ek~---~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~ 771 (1379)
|+.|+.+|..|..........+. .....+...+..+. ...+.+++.+|||+|||||++.+|+.||++|+
T Consensus 1165 R~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~ 1236 (1724)
T 4f92_B 1165 RKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLS--------DSTLKETLLNGVGYLHEGLSPMERRLVEQLFS 1236 (1724)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCC--------CHHHHHHHHTTEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcc--------cHHHHHHHhCCEEEECCCCCHHHHHHHHHHHH
Confidence 99999999887532100000000 00011112222222 24688899999999999999999999999999
Q ss_pred CCCeeEEEecccccccCCCCCceEEEccccccCCcc--cccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHH
Q 039491 772 RGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGRE--FRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLK 849 (1379)
Q Consensus 772 ~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~--~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~ 849 (1379)
+|.++|||||+|+|+|||+|+++|||.++.+||+.. +.++++.+|+||+|||||+|.|..|.||++|.+. +...++
T Consensus 1237 ~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~--~~~~~~ 1314 (1724)
T 4f92_B 1237 SGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS--KKDFFK 1314 (1724)
T ss_dssp HTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGG--GHHHHH
T ss_pred CCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecch--HHHHHH
Confidence 999999999999999999999999999999999864 4578999999999999999999999999999875 456666
Q ss_pred HHHhcCCCcccccccccHHHHHHHH-hhccc----cHHHHHhhChhh
Q 039491 850 HIIVGSATRLESQFRLTYIMILHLL-RVEEL----KVEDMLKRSFAE 891 (1379)
Q Consensus 850 ~li~g~~~~L~S~f~lty~miLnLl-r~e~~----~~e~~l~~SF~e 891 (1379)
+++ +.+.|++|++.......+|.. ..+.+ ++.++++.+|..
T Consensus 1315 ~ll-~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~ 1360 (1724)
T 4f92_B 1315 KFL-YEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLY 1360 (1724)
T ss_dssp HHT-TSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHH
T ss_pred HHh-CCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHH
Confidence 665 467899999987766555543 22222 467778888853
No 6
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.2e-49 Score=510.95 Aligned_cols=426 Identities=24% Similarity=0.368 Sum_probs=337.3
Q ss_pred cccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHH-HHCCCcEEEEcCCCccHHHHHHHHHHHHHh-cCCcEEE
Q 039491 372 AWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYY-LENGDSVFVAAHTSAGKTVVAEYAFALATK-HCTRAVY 448 (1379)
Q Consensus 372 ~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~-L~~g~sVlV~ApTGSGKTlvae~aI~~~l~-~~~raIy 448 (1379)
.|+++++++.+.+.+.+ ++|+ |+++|.++++. +.+|++++|+||||||||++|+++++..+. ++.+++|
T Consensus 2 ~f~~l~l~~~~~~~l~~--------~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~ 73 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKE--------RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVY 73 (720)
T ss_dssp BGGGCCSCHHHHHHHHH--------TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEE
T ss_pred cHhhcCCCHHHHHHHHH--------CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEE
Confidence 58889999888887776 7885 99999999998 788999999999999999999999987765 7899999
Q ss_pred ecchHHHHHHHHHHHhcc--c--cEEEEecCcccCC----CCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCc
Q 039491 449 TAPIKTISNQKYRDFSGK--F--DVGLLTGDVSLRP----EASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDI 520 (1379)
Q Consensus 449 lsPtkaLsnQk~~~~~~~--f--~VglltGdv~in~----~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~ 520 (1379)
++|+++|++|++++|+.. + +++.++|+...+. +++|+|||||+|.+++.+....++++++||+||||++.+.
T Consensus 74 i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~ 153 (720)
T 2zj8_A 74 IVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSR 153 (720)
T ss_dssp ECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCT
T ss_pred EcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCC
Confidence 999999999999999743 2 8999999887654 6899999999999999887777899999999999999999
Q ss_pred cchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhH
Q 039491 521 ERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGW 600 (1379)
Q Consensus 521 ~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~ 600 (1379)
+||..++.++..++.++|+|+||||++|..++++|++. .++....||+|++.+++....++.......
T Consensus 154 ~r~~~~~~ll~~l~~~~~ii~lSATl~n~~~~~~~l~~------~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~------ 221 (720)
T 2zj8_A 154 DRGATLEVILAHMLGKAQIIGLSATIGNPEELAEWLNA------ELIVSDWRPVKLRRGVFYQGFVTWEDGSID------ 221 (720)
T ss_dssp TTHHHHHHHHHHHBTTBEEEEEECCCSCHHHHHHHTTE------EEEECCCCSSEEEEEEEETTEEEETTSCEE------
T ss_pred cccHHHHHHHHHhhcCCeEEEEcCCcCCHHHHHHHhCC------cccCCCCCCCcceEEEEeCCeeeccccchh------
Confidence 99999999999888789999999999999999999963 456788999999876654332111100000
Q ss_pred HHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHH
Q 039491 601 KAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKL 680 (1379)
Q Consensus 601 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L 680 (1379)
. .......+...+
T Consensus 222 -------------------------------------------------~------------------~~~~~~~~~~~~ 234 (720)
T 2zj8_A 222 -------------------------------------------------R------------------FSSWEELVYDAI 234 (720)
T ss_dssp -------------------------------------------------E------------------CSSTTHHHHHHH
T ss_pred -------------------------------------------------h------------------hhHHHHHHHHHH
Confidence 0 000111222223
Q ss_pred HhCCCCCEEEEeCChhHHHHHHHHhhcC--CCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCC
Q 039491 681 SKKSLLPVVIFCFSKNHCDKLADGMSGI--DLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGL 758 (1379)
Q Consensus 681 ~~~~~~pvIVFv~Srk~ce~lA~~L~~~--~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL 758 (1379)
. ...++||||+|++.|+.++..|.+. .+....+...+. .....+. .-+....+.+++..||++|||||
T Consensus 235 ~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~----~~~~~i~----~~~~~~~l~~~~~~~v~~~h~~l 304 (720)
T 2zj8_A 235 R--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALN----ELADSLE----ENPTNEKLAKAIRGGVAFHHAGL 304 (720)
T ss_dssp H--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHH----HHHHTSC----SCHHHHHHHHHHTTTEEEECTTS
T ss_pred h--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHH----HHHHHHh----cccchHHHHHHHhcCeeeecCCC
Confidence 2 2489999999999999999998752 111222222221 1222221 22344568889999999999999
Q ss_pred ChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEe
Q 039491 759 LPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLC 838 (1379)
Q Consensus 759 ~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~ 838 (1379)
++.+|+.|++.|++|.++|||||+++++|||+|++++||+++.+||+.++.|.+..+|.||+|||||.|.|..|.||+++
T Consensus 305 ~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~ 384 (720)
T 2zj8_A 305 GRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVS 384 (720)
T ss_dssp CHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEEC
T ss_pred CHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEe
Confidence 99999999999999999999999999999999999999999999996667799999999999999999999899999999
Q ss_pred cCCCCCHHHHHHHHhcCCCcccccccccHHHHHHHH---hhccc----cHHHHHhhChhhHHhc
Q 039491 839 RDEIPGESDLKHIIVGSATRLESQFRLTYIMILHLL---RVEEL----KVEDMLKRSFAEFHSQ 895 (1379)
Q Consensus 839 ~~~~~~~~~l~~li~g~~~~L~S~f~lty~miLnLl---r~e~~----~~e~~l~~SF~e~~~~ 895 (1379)
++.. ....+++++.+.+++++|++....++..+++ ..+.. ++.+++..+|...+..
T Consensus 385 ~~~~-~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~ 447 (720)
T 2zj8_A 385 TSDD-PREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRK 447 (720)
T ss_dssp SSSC-HHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCS
T ss_pred cCcc-HHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhcc
Confidence 8763 2334567888999999999876444444443 22222 3667788898876654
No 7
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=8.9e-49 Score=502.36 Aligned_cols=434 Identities=27% Similarity=0.419 Sum_probs=327.1
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHH-HHCCCcEEEEcCCCccHHHHHHHHHHHHHh-cCCc
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYY-LENGDSVFVAAHTSAGKTVVAEYAFALATK-HCTR 445 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~-L~~g~sVlV~ApTGSGKTlvae~aI~~~l~-~~~r 445 (1379)
...+|+++++.+.+.+.+.+ ++|+ |+++|.+|++. +.++++++|+||||||||++|.++++..+. ++.+
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~--------~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~ 77 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKK--------RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGK 77 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHT--------TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSE
T ss_pred ccCcHHHcCCCHHHHHHHHh--------CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCe
Confidence 34679999999988887776 7885 99999999999 788999999999999999999999988775 7889
Q ss_pred EEEecchHHHHHHHHHHHhccc----cEEEEecCcccCC----CCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCC
Q 039491 446 AVYTAPIKTISNQKYRDFSGKF----DVGLLTGDVSLRP----EASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYV 517 (1379)
Q Consensus 446 aIylsPtkaLsnQk~~~~~~~f----~VglltGdv~in~----~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l 517 (1379)
++|++|+++|++|++++|+... +++.++|+..... .++|+|||||+|..++.++...++++++||+||||.+
T Consensus 78 il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 157 (715)
T 2va8_A 78 AIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYL 157 (715)
T ss_dssp EEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGG
T ss_pred EEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhc
Confidence 9999999999999999995432 8999999887654 5899999999999999887777899999999999999
Q ss_pred CCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCc---eeee-ccCc
Q 039491 518 NDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGE---FYKV-CENE 593 (1379)
Q Consensus 518 ~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~---l~~i-~d~~ 593 (1379)
.+..||..++.++..++ +.|+|+||||++|..++++|++. .++....||+|++.+++.... -+.+ ....
T Consensus 158 ~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~~~~~~~l~~------~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 230 (715)
T 2va8_A 158 NDPERGPVVESVTIRAK-RRNLLALSATISNYKQIAKWLGA------EPVATNWRPVPLIEGVIYPERKKKEYNVIFKDN 230 (715)
T ss_dssp GCTTTHHHHHHHHHHHH-TSEEEEEESCCTTHHHHHHHHTC------EEEECCCCSSCEEEEEEEECSSTTEEEEEETTS
T ss_pred CCcccchHHHHHHHhcc-cCcEEEEcCCCCCHHHHHHHhCC------CccCCCCCCCCceEEEEecCCcccceeeecCcc
Confidence 99899999999998887 79999999999999999999972 457788999999876643320 0000 0000
Q ss_pred ccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHH
Q 039491 594 AFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIW 673 (1379)
Q Consensus 594 ~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1379)
. . + .. .......
T Consensus 231 ~--------------------------------------~----------------~-------------~~-~~~~~~~ 242 (715)
T 2va8_A 231 T--------------------------------------T----------------K-------------KV-HGDDAII 242 (715)
T ss_dssp C--------------------------------------E----------------E-------------EE-ESSSHHH
T ss_pred h--------------------------------------h----------------h-------------hc-ccchHHH
Confidence 0 0 0 00 0001122
Q ss_pred HHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCC---CCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccc
Q 039491 674 LTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDL---TSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRG 750 (1379)
Q Consensus 674 ~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l---~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rG 750 (1379)
..+.+.+ . ..+++||||++++.|+.++..|..... ....+...+. .....+ .+........+.+++..|
T Consensus 243 ~~~~~~~-~-~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~----~~~~~i--~~~~~~~~~~l~~~~~~~ 314 (715)
T 2va8_A 243 AYTLDSL-S-KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEIL----KQLDDI--EEGGSDEKELLKSLISKG 314 (715)
T ss_dssp HHHHHHH-T-TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHH----HHHHTC--CSSCHHHHHHHHHHHTTT
T ss_pred HHHHHHH-h-cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHH----HHHHHh--hhccccccHHHHHHHhcC
Confidence 2233333 2 458999999999999999999986421 2222222222 222223 122223346688889999
Q ss_pred eEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccC---CcccccCCHHHHHHHhcccCCCC
Q 039491 751 IAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFD---GREFRQLLPGEYTQMAGRAGRRG 827 (1379)
Q Consensus 751 IavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfD---g~~~rpls~~eyiQmaGRAGRrG 827 (1379)
|++|||+|++.+|+.|+..|++|.++|||||+++++|||+|++++||++...|| +....|.+..+|.||+|||||.|
T Consensus 315 v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g 394 (715)
T 2va8_A 315 VAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPG 394 (715)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTT
T ss_pred EEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCC
Confidence 999999999999999999999999999999999999999999999999998899 44456899999999999999999
Q ss_pred CCCcEEEEEEecCCCCCHHHHHHHHhcCCCcccccccccHH---HHHHHHhhccc----cHHHHHhhChhhHH
Q 039491 828 LDKIGTVVVLCRDEIPGESDLKHIIVGSATRLESQFRLTYI---MILHLLRVEEL----KVEDMLKRSFAEFH 893 (1379)
Q Consensus 828 ~d~~G~vIil~~~~~~~~~~l~~li~g~~~~L~S~f~lty~---miLnLlr~e~~----~~e~~l~~SF~e~~ 893 (1379)
.|..|.||+++++.......+++++.+.+++++|.+..... .++.+...+.+ ++.+++.++|...+
T Consensus 395 ~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~ 467 (715)
T 2va8_A 395 FDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQ 467 (715)
T ss_dssp TCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHH
T ss_pred CCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhh
Confidence 98899999999765211134567888999999999876434 44444443322 34556667776543
No 8
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.7e-49 Score=506.21 Aligned_cols=424 Identities=27% Similarity=0.395 Sum_probs=322.6
Q ss_pred cccccC--CChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEE
Q 039491 372 AWVVSG--STEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVY 448 (1379)
Q Consensus 372 ~w~~~~--~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIy 448 (1379)
+|++++ +.+.+.+.+.+ ++|+ |+++|.++++.+.+|++++|+||||||||++|.++++..+..+.+++|
T Consensus 2 ~f~~l~~~l~~~~~~~l~~--------~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKE--------EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHC--------C---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred chhhhhhccCHHHHHHHHh--------CCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEE
Confidence 355554 44444444443 7884 999999999999999999999999999999999999988888899999
Q ss_pred ecchHHHHHHHHHHHhccc----cEEEEecCcccCC----CCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCc
Q 039491 449 TAPIKTISNQKYRDFSGKF----DVGLLTGDVSLRP----EASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDI 520 (1379)
Q Consensus 449 lsPtkaLsnQk~~~~~~~f----~VglltGdv~in~----~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~ 520 (1379)
++|+++|++|++++|+... +++.++|+..... .++|+|||||+|.+++.+....++++++||+||||++.+.
T Consensus 74 i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~ 153 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSE 153 (702)
T ss_dssp EESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCT
T ss_pred EeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCC
Confidence 9999999999999995432 7999999987654 6899999999999999887777899999999999999999
Q ss_pred cchhHHHHHHHHc---CccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccch
Q 039491 521 ERGVVWEEVIIML---PRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIP 597 (1379)
Q Consensus 521 ~rG~v~eeii~~L---p~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~ 597 (1379)
+||..++.++..+ ++.+|+|+||||++|..++++|++. .++..+.||+|++.+++....++.......
T Consensus 154 ~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n~~~~~~~l~~------~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~--- 224 (702)
T 2p6r_A 154 KRGATLEILVTKMRRMNKALRVIGLSATAPNVTEIAEWLDA------DYYVSDWRPVPLVEGVLCEGTLELFDGAFS--- 224 (702)
T ss_dssp TTHHHHHHHHHHHHHHCTTCEEEEEECCCTTHHHHHHHTTC------EEEECCCCSSCEEEEEECSSEEEEEETTEE---
T ss_pred CcccHHHHHHHHHHhcCcCceEEEECCCcCCHHHHHHHhCC------CcccCCCCCccceEEEeeCCeeeccCcchh---
Confidence 9999999988766 5689999999999999999999972 457788999999876654332211100000
Q ss_pred hhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHH
Q 039491 598 QGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLI 677 (1379)
Q Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li 677 (1379)
... .......+.
T Consensus 225 ------------------------------------------------------------------~~~--~~~~~~~~~ 236 (702)
T 2p6r_A 225 ------------------------------------------------------------------TSR--RVKFEELVE 236 (702)
T ss_dssp ------------------------------------------------------------------EEE--ECCHHHHHH
T ss_pred ------------------------------------------------------------------hhh--hhhHHHHHH
Confidence 000 000122222
Q ss_pred HHHHhCCCCCEEEEeCChhHHHHHHHHhhcC--CCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEec
Q 039491 678 NKLSKKSLLPVVIFCFSKNHCDKLADGMSGI--DLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHH 755 (1379)
Q Consensus 678 ~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~--~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhH 755 (1379)
+.+. ..+++||||++++.|+.++..|... .+....+ ....+. . .........+.+++..||++||
T Consensus 237 ~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~--~~~~i~--------~-~~~~~~~~~l~~~~~~~v~~~h 303 (702)
T 2p6r_A 237 ECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEG--LEKAIL--------E-ENEGEMSRKLAECVRKGAAFHH 303 (702)
T ss_dssp HHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSS--HHHHHH--------T-TCCSHHHHHHHHHHHTTCCEEC
T ss_pred HHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHH--HHHHHH--------h-hccccccHHHHHHHhcCeEEec
Confidence 3332 3579999999999999999998652 1111111 011110 0 1122344567888899999999
Q ss_pred CCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEE
Q 039491 756 AGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVV 835 (1379)
Q Consensus 756 ggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vI 835 (1379)
|+|++.+|+.++..|++|.++|||||+++++|||+|++++||+++.+||+. ..|.+..+|.||+|||||.|.|..|.||
T Consensus 304 ~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~-~~~~s~~~~~Qr~GRaGR~g~~~~G~~~ 382 (702)
T 2p6r_A 304 AGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGY-SKRIKVSEYKQMAGRAGRPGMDERGEAI 382 (702)
T ss_dssp TTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSS-EEECCHHHHHHHHTTBSCTTTCSCEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCC-CCcCCHHHHHHHhhhcCCCCCCCCceEE
Confidence 999999999999999999999999999999999999999999999999943 5689999999999999999999899999
Q ss_pred EEecCCCCCHHHHHHHHhcCCCcccccccccHHH---HHHHHhhccc----cHHHHHhhChhhHHhc
Q 039491 836 VLCRDEIPGESDLKHIIVGSATRLESQFRLTYIM---ILHLLRVEEL----KVEDMLKRSFAEFHSQ 895 (1379)
Q Consensus 836 il~~~~~~~~~~l~~li~g~~~~L~S~f~lty~m---iLnLlr~e~~----~~e~~l~~SF~e~~~~ 895 (1379)
+++++.. ....+++++.+.+++++|++.....+ ++.++..+.. +..+++.++|...+..
T Consensus 383 ~l~~~~~-~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~ 448 (702)
T 2p6r_A 383 IIVGKRD-REIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNE 448 (702)
T ss_dssp EECCGGG-HHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHC
T ss_pred EEecCcc-HHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhh
Confidence 9997652 12234457788999999998764343 3444433322 3556667788776544
No 9
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=9.7e-44 Score=430.14 Aligned_cols=329 Identities=19% Similarity=0.243 Sum_probs=270.2
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc-----
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH----- 442 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~----- 442 (1379)
...+|.++++.+.+.+++.+ .+|+ |+|+|++|++.+.+|++++++||||||||++|.++++..+..
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~--------~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~ 125 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNK--------SGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHEL 125 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHH--------TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCC
T ss_pred CcCChhhcCCCHHHHHHHHH--------cCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhccccc
Confidence 45679999999999999877 7888 999999999999999999999999999999999999877632
Q ss_pred ---CCcEEEecchHHHHHHHHHHHhccc-----cEEEEecCccc-------CCCCceeeecHHHHHHHHhcCcccCCCcc
Q 039491 443 ---CTRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSL-------RPEASCLIMTTEILRSMLYRGADIIRDIE 507 (1379)
Q Consensus 443 ---~~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~i-------n~~a~IlV~TpEiL~smL~~~~~~l~~v~ 507 (1379)
+.++||++||++|+.|+++.+++.. ++++++|+... ...++|+|+||++|.+++.++...+++++
T Consensus 126 ~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~ 205 (434)
T 2db3_A 126 ELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTR 205 (434)
T ss_dssp CTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCC
T ss_pred ccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCC
Confidence 5689999999999999999998765 68889998763 34679999999999999998888899999
Q ss_pred EEEEeccCCCCCccchhHHHHHHHHc--CccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCC--CcCceEEEeec
Q 039491 508 WVIFDEVHYVNDIERGVVWEEVIIML--PRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKR--PVPLEHCLYYS 583 (1379)
Q Consensus 508 lVI~DEaH~l~d~~rG~v~eeii~~L--p~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~R--pvpLe~~l~~~ 583 (1379)
+||+||||++.+.+++..+..++..+ ++..|+++||||+++.. .++.......++.+...... ...+.+.++..
T Consensus 206 ~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~--~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~ 283 (434)
T 2db3_A 206 FVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEI--QRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEV 283 (434)
T ss_dssp EEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHH--HHHHHTTCSSCEEEEESSTTCCCTTEEEEEEEC
T ss_pred eEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHH--HHHHHHhccCCEEEEeccccccccccceEEEEe
Confidence 99999999999999999999988775 67899999999998653 34444444444443322111 11122221110
Q ss_pred CceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCc
Q 039491 584 GEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNW 663 (1379)
Q Consensus 584 ~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~ 663 (1379)
.
T Consensus 284 ~------------------------------------------------------------------------------- 284 (434)
T 2db3_A 284 N------------------------------------------------------------------------------- 284 (434)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred ccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHH
Q 039491 664 GLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRV 743 (1379)
Q Consensus 664 ~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l 743 (1379)
...+...++..+.... .++||||++++.|+.++..|...++.
T Consensus 285 -----~~~k~~~l~~~l~~~~-~~~lVF~~t~~~a~~l~~~L~~~~~~-------------------------------- 326 (434)
T 2db3_A 285 -----KYAKRSKLIEILSEQA-DGTIVFVETKRGADFLASFLSEKEFP-------------------------------- 326 (434)
T ss_dssp -----GGGHHHHHHHHHHHCC-TTEEEECSSHHHHHHHHHHHHHTTCC--------------------------------
T ss_pred -----cHHHHHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhCCCC--------------------------------
Confidence 1223345556666554 45999999999999999999775433
Q ss_pred HHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhccc
Q 039491 744 QSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRA 823 (1379)
Q Consensus 744 ~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRA 823 (1379)
+..+||++++.+|+.++..|++|..+|||||+++++|||+|++++||+ ||. |.++.+|+||+|||
T Consensus 327 -------~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~----~d~----p~~~~~y~qriGR~ 391 (434)
T 2db3_A 327 -------TTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN----YDM----PSKIDDYVHRIGRT 391 (434)
T ss_dssp -------EEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEE----SSC----CSSHHHHHHHHTTS
T ss_pred -------EEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEE----ECC----CCCHHHHHHHhccc
Confidence 567999999999999999999999999999999999999999999999 999 89999999999999
Q ss_pred CCCCCCCcEEEEEEecCC
Q 039491 824 GRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 824 GRrG~d~~G~vIil~~~~ 841 (1379)
||.|.. |.++++++++
T Consensus 392 gR~g~~--G~a~~~~~~~ 407 (434)
T 2db3_A 392 GRVGNN--GRATSFFDPE 407 (434)
T ss_dssp SCTTCC--EEEEEEECTT
T ss_pred ccCCCC--CEEEEEEecc
Confidence 999975 9999999754
No 10
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3.8e-42 Score=408.90 Aligned_cols=340 Identities=21% Similarity=0.226 Sum_probs=273.4
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh---cCC
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK---HCT 444 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~---~~~ 444 (1379)
...+|+++++.+.+.+++.+ .+|+ |+++|++|++.+.+|++++++||||+|||++|.++++..+. .+.
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~--------~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~ 90 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFE--------AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKI 90 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHH--------TTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSC
T ss_pred ccCChhhcCCCHHHHHHHHH--------CCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCc
Confidence 45689999999999999987 6788 99999999999999999999999999999999999988774 467
Q ss_pred cEEEecchHHHHHHHHHHHhccc-----cEEEEecCccc-------CCCCceeeecHHHHHHHHhcCcccCCCccEEEEe
Q 039491 445 RAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSL-------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFD 512 (1379)
Q Consensus 445 raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~i-------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~D 512 (1379)
++||++|+++|++|+++.+++.+ .++.++|+... +..++|+|+||+.|.+++.++...+.++++||+|
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiD 170 (400)
T 1s2m_A 91 QALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMD 170 (400)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEe
Confidence 89999999999999999998865 68888888653 4568999999999999998877788999999999
Q ss_pred ccCCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCC-CcCceEEEeecCceeeecc
Q 039491 513 EVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKR-PVPLEHCLYYSGEFYKVCE 591 (1379)
Q Consensus 513 EaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~R-pvpLe~~l~~~~~l~~i~d 591 (1379)
|||++.+..++..++.++..+++..++++||||++... .+++......+..+...... ...+.+++....
T Consensus 171 EaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 241 (400)
T 1s2m_A 171 EADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTV--KEFMVKHLHKPYEINLMEELTLKGITQYYAFVE------- 241 (400)
T ss_dssp SHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHH--HHHHHHHCSSCEEESCCSSCBCTTEEEEEEECC-------
T ss_pred CchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHH--HHHHHHHcCCCeEEEeccccccCCceeEEEEec-------
Confidence 99999988888888888888888999999999987543 35555444434333211111 111121111000
Q ss_pred CcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhH
Q 039491 592 NEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVS 671 (1379)
Q Consensus 592 ~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1379)
...
T Consensus 242 -----------------------------------------------------------------------------~~~ 244 (400)
T 1s2m_A 242 -----------------------------------------------------------------------------ERQ 244 (400)
T ss_dssp -----------------------------------------------------------------------------GGG
T ss_pred -----------------------------------------------------------------------------hhh
Confidence 112
Q ss_pred HHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccce
Q 039491 672 IWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGI 751 (1379)
Q Consensus 672 ~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGI 751 (1379)
....+...+......++||||++++.|+.++..|...+ .++
T Consensus 245 k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~---------------------------------------~~~ 285 (400)
T 1s2m_A 245 KLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLG---------------------------------------YSC 285 (400)
T ss_dssp HHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHT---------------------------------------CCE
T ss_pred HHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcC---------------------------------------CCe
Confidence 23334445555566799999999999999999986532 247
Q ss_pred EEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCc
Q 039491 752 AIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKI 831 (1379)
Q Consensus 752 avhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~ 831 (1379)
.++||+|++.+|+.++..|++|.++|||||+++++|+|+|++++||+ ||. |.++..|+||+|||||.|.+
T Consensus 286 ~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~----~~~----p~s~~~~~Qr~GR~gR~g~~-- 355 (400)
T 1s2m_A 286 YYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN----FDF----PKTAETYLHRIGRSGRFGHL-- 355 (400)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEE----SSC----CSSHHHHHHHHCBSSCTTCC--
T ss_pred EEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEE----eCC----CCCHHHHHHhcchhcCCCCC--
Confidence 78999999999999999999999999999999999999999999999 888 89999999999999999965
Q ss_pred EEEEEEecCCCCCHHHHHHHHh
Q 039491 832 GTVVVLCRDEIPGESDLKHIIV 853 (1379)
Q Consensus 832 G~vIil~~~~~~~~~~l~~li~ 853 (1379)
|.|+++++++ +...++++..
T Consensus 356 g~~~~l~~~~--~~~~~~~i~~ 375 (400)
T 1s2m_A 356 GLAINLINWN--DRFNLYKIEQ 375 (400)
T ss_dssp EEEEEEECGG--GHHHHHHHHH
T ss_pred ceEEEEeccc--hHHHHHHHHH
Confidence 9999998765 4455555443
No 11
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.8e-42 Score=411.79 Aligned_cols=338 Identities=20% Similarity=0.274 Sum_probs=272.3
Q ss_pred cccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh---cCCc
Q 039491 370 KEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK---HCTR 445 (1379)
Q Consensus 370 ~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~---~~~r 445 (1379)
..+|.++++.+.+.+++.+ ++|+ |+++|++|++.+.+|++++++||||+|||++|.++++..+. .+.+
T Consensus 36 ~~~f~~~~l~~~l~~~l~~--------~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~ 107 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYA--------YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQ 107 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHH--------HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCC
T ss_pred CCCHhhcCCCHHHHHHHHH--------cCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCce
Confidence 4579999999999999887 7888 99999999999999999999999999999999999988774 5789
Q ss_pred EEEecchHHHHHHHHHHHhccc-----cEEEEecCcccC-------CCCceeeecHHHHHHHHhcCcccCCCccEEEEec
Q 039491 446 AVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSLR-------PEASCLIMTTEILRSMLYRGADIIRDIEWVIFDE 513 (1379)
Q Consensus 446 aIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~in-------~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DE 513 (1379)
+||++|+++|++|+++.+++.. .++.++|+.... ...+|+|+||+.|..++.++...+.++++||+||
T Consensus 108 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDE 187 (410)
T 2j0s_A 108 ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDE 187 (410)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred EEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEcc
Confidence 9999999999999999998764 688888887532 3478999999999999998877889999999999
Q ss_pred cCCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCC--CCcCceEEEeecCceeeecc
Q 039491 514 VHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTK--RPVPLEHCLYYSGEFYKVCE 591 (1379)
Q Consensus 514 aH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~--RpvpLe~~l~~~~~l~~i~d 591 (1379)
||++.+.++...+..++..+++..|+++||||+++. +.+++......+..+..... .+..+.+++....
T Consensus 188 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 258 (410)
T 2j0s_A 188 ADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHE--ILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVE------- 258 (410)
T ss_dssp HHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHH--HHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEES-------
T ss_pred HHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHH--HHHHHHHHcCCCEEEEecCccccCCCceEEEEEeC-------
Confidence 999999888888888888899999999999999764 33444444444444332211 1111122111000
Q ss_pred CcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhH
Q 039491 592 NEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVS 671 (1379)
Q Consensus 592 ~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1379)
....
T Consensus 259 ----------------------------------------------------------------------------~~~~ 262 (410)
T 2j0s_A 259 ----------------------------------------------------------------------------REEW 262 (410)
T ss_dssp ----------------------------------------------------------------------------STTH
T ss_pred ----------------------------------------------------------------------------cHHh
Confidence 0111
Q ss_pred HHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccce
Q 039491 672 IWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGI 751 (1379)
Q Consensus 672 ~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGI 751 (1379)
....+...+......++||||++++.|+.++..|...++ ++
T Consensus 263 k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~---------------------------------------~~ 303 (410)
T 2j0s_A 263 KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANF---------------------------------------TV 303 (410)
T ss_dssp HHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTC---------------------------------------CC
T ss_pred HHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCC---------------------------------------ce
Confidence 233344444444556999999999999999999976543 26
Q ss_pred EEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCc
Q 039491 752 AIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKI 831 (1379)
Q Consensus 752 avhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~ 831 (1379)
..+||+|++.+|+.++..|++|.++|||||+++++|+|+|++++||+ ||. |.++..|+||+|||||.|..
T Consensus 304 ~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~----~~~----p~s~~~~~Qr~GR~gR~g~~-- 373 (410)
T 2j0s_A 304 SSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN----YDL----PNNRELYIHRIGRSGRYGRK-- 373 (410)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE----SSC----CSSHHHHHHHHTTSSGGGCC--
T ss_pred EEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEE----ECC----CCCHHHHHHhcccccCCCCc--
Confidence 67999999999999999999999999999999999999999999999 998 89999999999999999965
Q ss_pred EEEEEEecCCCCCHHHHHHH
Q 039491 832 GTVVVLCRDEIPGESDLKHI 851 (1379)
Q Consensus 832 G~vIil~~~~~~~~~~l~~l 851 (1379)
|.|+++++++ +...++++
T Consensus 374 g~~~~~~~~~--~~~~~~~i 391 (410)
T 2j0s_A 374 GVAINFVKND--DIRILRDI 391 (410)
T ss_dssp EEEEEEEEGG--GHHHHHHH
T ss_pred eEEEEEecHH--HHHHHHHH
Confidence 9999998764 34444443
No 12
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.9e-42 Score=410.66 Aligned_cols=330 Identities=18% Similarity=0.177 Sum_probs=259.4
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc-----
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH----- 442 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~----- 442 (1379)
...+|+++++.+.+.+++.. .+|. |+++|++|++.+.+|++++++||||+|||++|.++++..+..
T Consensus 13 ~~~~f~~~~l~~~l~~~l~~--------~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~ 84 (417)
T 2i4i_A 13 HIESFSDVEMGEIIMGNIEL--------TRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGE 84 (417)
T ss_dssp CCSSGGGSCCCHHHHHHHHH--------HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCH
T ss_pred ccCCHhhCCCCHHHHHHHHH--------CCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccc
Confidence 34579999999999999876 5675 999999999999999999999999999999999998876522
Q ss_pred ----------------CCcEEEecchHHHHHHHHHHHhccc-----cEEEEecCccc-------CCCCceeeecHHHHHH
Q 039491 443 ----------------CTRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSL-------RPEASCLIMTTEILRS 494 (1379)
Q Consensus 443 ----------------~~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~i-------n~~a~IlV~TpEiL~s 494 (1379)
+.++||++|+++|++|+++.+++.+ +++.++|+... ...++|+|+||++|.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~ 164 (417)
T 2i4i_A 85 ALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVD 164 (417)
T ss_dssp HHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHH
T ss_pred hhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHH
Confidence 2679999999999999999998754 68888888753 3467999999999999
Q ss_pred HHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHH--cCc--cceEEEecccCCChHHHHHHHhhhcCCcEEEEccC
Q 039491 495 MLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIM--LPR--HINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTT 570 (1379)
Q Consensus 495 mL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~--Lp~--~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~ 570 (1379)
++.++...+.++++|||||||++.+.+++..+..++.. ++. ..++++||||+++..+ .++......+..+....
T Consensus 165 ~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~--~~~~~~~~~~~~~~~~~ 242 (417)
T 2i4i_A 165 MMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQ--MLARDFLDEYIFLAVGR 242 (417)
T ss_dssp HHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHH--HHHHHHCSSCEEEEEC-
T ss_pred HHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHH--HHHHHHcCCCEEEEeCC
Confidence 99888777899999999999999988888888887763 333 6899999999986532 22222223333332211
Q ss_pred C--CCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCc
Q 039491 571 K--RPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKH 648 (1379)
Q Consensus 571 ~--RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~ 648 (1379)
. .+..+.+.+....
T Consensus 243 ~~~~~~~i~~~~~~~~---------------------------------------------------------------- 258 (417)
T 2i4i_A 243 VGSTSENITQKVVWVE---------------------------------------------------------------- 258 (417)
T ss_dssp ---CCSSEEEEEEECC----------------------------------------------------------------
T ss_pred CCCCccCceEEEEEec----------------------------------------------------------------
Confidence 1 1111222211100
Q ss_pred cccccccCCCCCCCcccccchhHHHHHHHHHHHhC-CCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHh
Q 039491 649 SVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKK-SLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAF 727 (1379)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~-~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~ 727 (1379)
.......+...+... ...++||||++++.|+.++..|...++
T Consensus 259 --------------------~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~----------------- 301 (417)
T 2i4i_A 259 --------------------ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY----------------- 301 (417)
T ss_dssp --------------------GGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTC-----------------
T ss_pred --------------------cHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCC-----------------
Confidence 011223344444443 357899999999999999999876433
Q ss_pred hhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcc
Q 039491 728 SRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGRE 807 (1379)
Q Consensus 728 ~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~ 807 (1379)
.+..+||+|++.+|+.++..|++|.++|||||+++++|+|+|++++||+ ||.
T Consensus 302 ----------------------~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~----~~~-- 353 (417)
T 2i4i_A 302 ----------------------ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN----FDL-- 353 (417)
T ss_dssp ----------------------CEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEE----SSC--
T ss_pred ----------------------CeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE----EcC--
Confidence 3678999999999999999999999999999999999999999999999 998
Q ss_pred cccCCHHHHHHHhcccCCCCCCCcEEEEEEecCC
Q 039491 808 FRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 808 ~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~ 841 (1379)
|.++.+|+||+|||||.|.. |.|++++++.
T Consensus 354 --p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~ 383 (417)
T 2i4i_A 354 --PSDIEEYVHRIGRTGRVGNL--GLATSFFNER 383 (417)
T ss_dssp --CSSHHHHHHHHTTBCC--CC--EEEEEEECGG
T ss_pred --CCCHHHHHHhcCccccCCCC--ceEEEEEccc
Confidence 89999999999999999965 9999998754
No 13
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.5e-41 Score=401.07 Aligned_cols=333 Identities=19% Similarity=0.252 Sum_probs=262.3
Q ss_pred cccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCC--CcEEEEcCCCccHHHHHHHHHHHHHh---cC
Q 039491 370 KEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENG--DSVFVAAHTSAGKTVVAEYAFALATK---HC 443 (1379)
Q Consensus 370 ~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g--~sVlV~ApTGSGKTlvae~aI~~~l~---~~ 443 (1379)
..+|+.+++.+.+.+.+.+ .+|. |+++|++|++.+..+ ++++++||||+|||++|.++++..+. .+
T Consensus 4 ~~~f~~~~l~~~l~~~l~~--------~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~ 75 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYA--------MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDAS 75 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHH--------TTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCS
T ss_pred ccCHhhCCCCHHHHHHHHH--------CCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCC
Confidence 4689999999999999987 6676 999999999999988 89999999999999999999988774 46
Q ss_pred CcEEEecchHHHHHHHHHHHhccc-----cEEEEecCccc---CCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccC
Q 039491 444 TRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSL---RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVH 515 (1379)
Q Consensus 444 ~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~i---n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH 515 (1379)
.++||++|+++|++|+++.+++.+ .++..+|+... ...++|+|+||+.|.+++.++...+.++++|||||||
T Consensus 76 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 155 (395)
T 3pey_A 76 PQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEAD 155 (395)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHH
T ss_pred ccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChh
Confidence 799999999999999999998854 56777776543 2357999999999999998887788999999999999
Q ss_pred CCCC-ccchhHHHHHHHHcCccceEEEecccCCChH-HHHHHHhhhcCCcEEEEcc--CCCCcCceEEEeecCceeeecc
Q 039491 516 YVND-IERGVVWEEVIIMLPRHINIVLLSATVPNTV-EFADWIGRTKQKKIRVTGT--TKRPVPLEHCLYYSGEFYKVCE 591 (1379)
Q Consensus 516 ~l~d-~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~-efa~wl~~~~~~~i~vi~t--~~RpvpLe~~l~~~~~l~~i~d 591 (1379)
++.+ ..+...+..+...++...|+++||||+++.. .+..++. ..+..+... ...+..+.+.+....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------- 225 (395)
T 3pey_A 156 NMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIV---PNANTLELQTNEVNVDAIKQLYMDCK------- 225 (395)
T ss_dssp HHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHS---CSCEEECCCGGGCSCTTEEEEEEECS-------
T ss_pred hhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhC---CCCeEEEccccccccccccEEEEEcC-------
Confidence 9876 5667777778888888999999999998753 4444332 222222111 111111111111000
Q ss_pred CcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhH
Q 039491 592 NEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVS 671 (1379)
Q Consensus 592 ~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1379)
....
T Consensus 226 ----------------------------------------------------------------------------~~~~ 229 (395)
T 3pey_A 226 ----------------------------------------------------------------------------NEAD 229 (395)
T ss_dssp ----------------------------------------------------------------------------SHHH
T ss_pred ----------------------------------------------------------------------------chHH
Confidence 0122
Q ss_pred HHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccce
Q 039491 672 IWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGI 751 (1379)
Q Consensus 672 ~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGI 751 (1379)
....+...+......++||||++++.|+.++..|...++ .+
T Consensus 230 ~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~---------------------------------------~~ 270 (395)
T 3pey_A 230 KFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGH---------------------------------------EV 270 (395)
T ss_dssp HHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTC---------------------------------------CC
T ss_pred HHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCC---------------------------------------cE
Confidence 333444445555567999999999999999999976543 26
Q ss_pred EEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcc--cccCCHHHHHHHhcccCCCCCC
Q 039491 752 AIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGRE--FRQLLPGEYTQMAGRAGRRGLD 829 (1379)
Q Consensus 752 avhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~--~rpls~~eyiQmaGRAGRrG~d 829 (1379)
.++||+|++.+|+.+++.|++|.++|||||+++++|+|+|++++||+ ||... ....++.+|+||+|||||.|.+
T Consensus 271 ~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~----~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~ 346 (395)
T 3pey_A 271 SILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN----YDLPTLANGQADPATYIHRIGRTGRFGRK 346 (395)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEE----SSCCBCTTSSBCHHHHHHHHTTSSCTTCC
T ss_pred EEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEE----cCCCCCCcCCCCHHHhhHhccccccCCCC
Confidence 78999999999999999999999999999999999999999999999 88721 1112999999999999999965
Q ss_pred CcEEEEEEecCC
Q 039491 830 KIGTVVVLCRDE 841 (1379)
Q Consensus 830 ~~G~vIil~~~~ 841 (1379)
|.++++++++
T Consensus 347 --g~~~~~~~~~ 356 (395)
T 3pey_A 347 --GVAISFVHDK 356 (395)
T ss_dssp --EEEEEEECSH
T ss_pred --ceEEEEEech
Confidence 9999998754
No 14
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.6e-41 Score=403.86 Aligned_cols=336 Identities=17% Similarity=0.187 Sum_probs=262.5
Q ss_pred ccccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCC--CcEEEEcCCCccHHHHHHHHHHHHHh--
Q 039491 367 QQQKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENG--DSVFVAAHTSAGKTVVAEYAFALATK-- 441 (1379)
Q Consensus 367 ~~~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g--~sVlV~ApTGSGKTlvae~aI~~~l~-- 441 (1379)
.....+|..+++.+.+.+++.+ ++|. |+++|.+|++.+.++ ++++++||||+|||++|.++++..+.
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~--------~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~ 92 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYA--------MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA 92 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHH--------TTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT
T ss_pred ccccCCHhhCCCCHHHHHHHHH--------cCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc
Confidence 3456789999999999999987 6776 999999999999887 89999999999999999999988874
Q ss_pred -cCCcEEEecchHHHHHHHHHHHhccc------cEEEEecCcccCC----CCceeeecHHHHHHHHhc-CcccCCCccEE
Q 039491 442 -HCTRAVYTAPIKTISNQKYRDFSGKF------DVGLLTGDVSLRP----EASCLIMTTEILRSMLYR-GADIIRDIEWV 509 (1379)
Q Consensus 442 -~~~raIylsPtkaLsnQk~~~~~~~f------~VglltGdv~in~----~a~IlV~TpEiL~smL~~-~~~~l~~v~lV 509 (1379)
.+.++||++|+++|++|+++.+++.. .++...|+..... ..+|+|+||+.|..++.+ +...+.++++|
T Consensus 93 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~i 172 (412)
T 3fht_A 93 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 172 (412)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEE
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEE
Confidence 34589999999999999988777643 6788888766443 368999999999998865 44557899999
Q ss_pred EEeccCCCCC-ccchhHHHHHHHHcCccceEEEecccCCChH-HHHHHHhhhcCCcEEEEccCC--CCcCceEEEeecCc
Q 039491 510 IFDEVHYVND-IERGVVWEEVIIMLPRHINIVLLSATVPNTV-EFADWIGRTKQKKIRVTGTTK--RPVPLEHCLYYSGE 585 (1379)
Q Consensus 510 I~DEaH~l~d-~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~-efa~wl~~~~~~~i~vi~t~~--RpvpLe~~l~~~~~ 585 (1379)
||||||++.+ ..+...+..+...++...|+++||||+++.. .++... ...+..+..... .+..+.+++....
T Consensus 173 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~- 248 (412)
T 3fht_A 173 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKV---VPDPNVIKLKREEETLDTIKQYYVLCS- 248 (412)
T ss_dssp EEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHH---SSSCEEECCCGGGSSCTTEEEEEEECS-
T ss_pred EEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHh---cCCCeEEeeccccccccCceEEEEEcC-
Confidence 9999999876 5566677777888899999999999998754 333332 233333222111 1111222211100
Q ss_pred eeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCccc
Q 039491 586 FYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGL 665 (1379)
Q Consensus 586 l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~ 665 (1379)
T Consensus 249 -------------------------------------------------------------------------------- 248 (412)
T 3fht_A 249 -------------------------------------------------------------------------------- 248 (412)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHH
Q 039491 666 RRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQS 745 (1379)
Q Consensus 666 ~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~ 745 (1379)
........+...+......++||||++++.|+.++..|...++
T Consensus 249 --~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~----------------------------------- 291 (412)
T 3fht_A 249 --SRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGH----------------------------------- 291 (412)
T ss_dssp --SHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred --ChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCC-----------------------------------
Confidence 0123344555555555667999999999999999999976433
Q ss_pred hhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCccccc--CCHHHHHHHhccc
Q 039491 746 LLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQ--LLPGEYTQMAGRA 823 (1379)
Q Consensus 746 lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rp--ls~~eyiQmaGRA 823 (1379)
++.++||+|++.+|+.+++.|++|.++|||||+++++|||+|++++||+ ||...... .+..+|+||+|||
T Consensus 292 ----~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~----~~~p~~~~~~~s~~~~~Qr~GR~ 363 (412)
T 3fht_A 292 ----QVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN----FDLPVDKDGNPDNETYLHRIGRT 363 (412)
T ss_dssp ----CCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEE----SSCCBCSSSSBCHHHHHHHHTTS
T ss_pred ----eEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEE----ECCCCCCCCCcchheeecccCcc
Confidence 3678999999999999999999999999999999999999999999999 88721111 5779999999999
Q ss_pred CCCCCCCcEEEEEEecCC
Q 039491 824 GRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 824 GRrG~d~~G~vIil~~~~ 841 (1379)
||.|.+ |.+++++++.
T Consensus 364 gR~g~~--g~~~~~~~~~ 379 (412)
T 3fht_A 364 GRFGKR--GLAVNMVDSK 379 (412)
T ss_dssp SCTTCC--EEEEEEECSH
T ss_pred cCCCCC--ceEEEEEcCh
Confidence 999965 9999998654
No 15
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.6e-41 Score=401.61 Aligned_cols=329 Identities=18% Similarity=0.190 Sum_probs=263.5
Q ss_pred cccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh---cCCc
Q 039491 370 KEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK---HCTR 445 (1379)
Q Consensus 370 ~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~---~~~r 445 (1379)
...|+++.+.+.+.+.+.+ ++|+ |+++|++|++.+.+|++++++||||+|||++|.+++...+. .+.+
T Consensus 7 ~~~f~~~~l~~~l~~~l~~--------~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~ 78 (391)
T 1xti_A 7 SSGFRDFLLKPELLRAIVD--------CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVS 78 (391)
T ss_dssp --CGGGGCCCHHHHHHHHH--------HSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCC
T ss_pred CCChhhcCCCHHHHHHHHH--------CCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCee
Confidence 4579999999999988877 6787 99999999999999999999999999999999999988764 3569
Q ss_pred EEEecchHHHHHHHHHHHhccc------cEEEEecCcccC--------CCCceeeecHHHHHHHHhcCcccCCCccEEEE
Q 039491 446 AVYTAPIKTISNQKYRDFSGKF------DVGLLTGDVSLR--------PEASCLIMTTEILRSMLYRGADIIRDIEWVIF 511 (1379)
Q Consensus 446 aIylsPtkaLsnQk~~~~~~~f------~VglltGdv~in--------~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~ 511 (1379)
+||++|+++|++|+++.+++.. +++.++|+.... ..++|+|+||+.|.+++.+....+.++++||+
T Consensus 79 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 79 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 9999999999999998888752 789999987632 23689999999999999888777899999999
Q ss_pred eccCCCCCc-cchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCC---cCceEEEeecCcee
Q 039491 512 DEVHYVNDI-ERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRP---VPLEHCLYYSGEFY 587 (1379)
Q Consensus 512 DEaH~l~d~-~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~Rp---vpLe~~l~~~~~l~ 587 (1379)
||||++.++ .+...+..++..++...|+++||||+++... ..+......+..+....... ..+.+++....
T Consensus 159 DEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 233 (391)
T 1xti_A 159 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIR--PVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLK--- 233 (391)
T ss_dssp CSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHH--HHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECC---
T ss_pred eCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHH--HHHHHHcCCCeEEEecCccccCcccceEEEEEcC---
Confidence 999999874 5566677777788889999999999987642 22222223343333222111 11222111000
Q ss_pred eeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCccccc
Q 039491 588 KVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRR 667 (1379)
Q Consensus 588 ~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~ 667 (1379)
T Consensus 234 -------------------------------------------------------------------------------- 233 (391)
T 1xti_A 234 -------------------------------------------------------------------------------- 233 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhh
Q 039491 668 SEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLL 747 (1379)
Q Consensus 668 ~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL 747 (1379)
.......+...+......++||||++++.|+.++..|...++.
T Consensus 234 -~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~------------------------------------ 276 (391)
T 1xti_A 234 -DNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFP------------------------------------ 276 (391)
T ss_dssp -GGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCC------------------------------------
T ss_pred -chhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCc------------------------------------
Confidence 1122334555555566789999999999999999999764432
Q ss_pred ccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCC
Q 039491 748 RRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRG 827 (1379)
Q Consensus 748 ~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG 827 (1379)
+..+||+|++.+|+.+++.|++|..+|||||+++++|+|+|++++||+ |+. |.++.+|+||+|||||.|
T Consensus 277 ---~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~----~~~----p~s~~~~~Qr~GR~~R~g 345 (391)
T 1xti_A 277 ---AIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN----YDM----PEDSDTYLHRVARAGRFG 345 (391)
T ss_dssp ---EEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEE----SSC----CSSHHHHHHHHCBCSSSC
T ss_pred ---EEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEE----eCC----CCCHHHHHHhcccccCCC
Confidence 567999999999999999999999999999999999999999999999 888 899999999999999999
Q ss_pred CCCcEEEEEEecCC
Q 039491 828 LDKIGTVVVLCRDE 841 (1379)
Q Consensus 828 ~d~~G~vIil~~~~ 841 (1379)
.+ |.|++++.+.
T Consensus 346 ~~--g~~~~~~~~~ 357 (391)
T 1xti_A 346 TK--GLAITFVSDE 357 (391)
T ss_dssp CC--CEEEEEECSH
T ss_pred Cc--eEEEEEEccc
Confidence 65 9999998754
No 16
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=5.1e-42 Score=408.91 Aligned_cols=339 Identities=20% Similarity=0.249 Sum_probs=259.8
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh---cCC
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK---HCT 444 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~---~~~ 444 (1379)
....|..+...+.+.+.+.+ ++|. |+++|+++++.+.+|++++++||||+|||++|.++++..+. .+.
T Consensus 38 ~~~~f~~~~l~~~~~~~l~~--------~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~ 109 (414)
T 3eiq_A 38 IVDSFDDMNLSESLLRGIYA--------YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKAT 109 (414)
T ss_dssp CCCCGGGGCCCHHHHHHHHH--------TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSC
T ss_pred hhcCHhhCCCCHHHHHHHHH--------cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCce
Confidence 34679999999999888877 6777 99999999999999999999999999999999999998875 568
Q ss_pred cEEEecchHHHHHHHHHHHhccc-----cEEEEecCcccC--------CCCceeeecHHHHHHHHhcCcccCCCccEEEE
Q 039491 445 RAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSLR--------PEASCLIMTTEILRSMLYRGADIIRDIEWVIF 511 (1379)
Q Consensus 445 raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~in--------~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~ 511 (1379)
++||++|+++|+.|+++.+++.+ .++.++|+.... ..++|+|+||++|.+++.++...+.++++||+
T Consensus 110 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 110 QALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred eEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 89999999999999999998865 677777776532 56799999999999999888778889999999
Q ss_pred eccCCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCC--CcCceEEEeecCceeee
Q 039491 512 DEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKR--PVPLEHCLYYSGEFYKV 589 (1379)
Q Consensus 512 DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~R--pvpLe~~l~~~~~l~~i 589 (1379)
||||++.+.+++..+..++..++++.|+++||||+++.. ..++......+..+...... +..+.+++....
T Consensus 190 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 262 (414)
T 3eiq_A 190 DEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDV--LEVTKKFMRDPIRILVKKEELTLEGIRQFYINVE----- 262 (414)
T ss_dssp CSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHH--HHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECS-----
T ss_pred ECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHH--HHHHHHHcCCCEEEEecCCccCCCCceEEEEEeC-----
Confidence 999999888888899999999999999999999987643 24444333434333222111 111111111000
Q ss_pred ccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccch
Q 039491 590 CENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSE 669 (1379)
Q Consensus 590 ~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (1379)
..
T Consensus 263 ------------------------------------------------------------------------------~~ 264 (414)
T 3eiq_A 263 ------------------------------------------------------------------------------RE 264 (414)
T ss_dssp ------------------------------------------------------------------------------SS
T ss_pred ------------------------------------------------------------------------------hH
Confidence 01
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhcc
Q 039491 670 VSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRR 749 (1379)
Q Consensus 670 ~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~r 749 (1379)
......+...+......++||||++++.|+.++..|...++
T Consensus 265 ~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~--------------------------------------- 305 (414)
T 3eiq_A 265 EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDF--------------------------------------- 305 (414)
T ss_dssp TTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTC---------------------------------------
T ss_pred HhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCC---------------------------------------
Confidence 12344556666666678999999999999999999976433
Q ss_pred ceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCC
Q 039491 750 GIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLD 829 (1379)
Q Consensus 750 GIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d 829 (1379)
++..+||+|++.+|+.+++.|++|.++|||||+++++|||+|++++||+ ||. |.++.+|+||+|||||.|.+
T Consensus 306 ~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~----~~~----p~s~~~~~Qr~GR~gR~g~~ 377 (414)
T 3eiq_A 306 TVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YDL----PTNRENYIHRIGRGGRFGRK 377 (414)
T ss_dssp CCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEE----SSC----CSSTHHHHHHSCCC------
T ss_pred eEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEE----eCC----CCCHHHhhhhcCcccCCCCC
Confidence 3677999999999999999999999999999999999999999999999 998 89999999999999999965
Q ss_pred CcEEEEEEecCCCCCHHHHHHH
Q 039491 830 KIGTVVVLCRDEIPGESDLKHI 851 (1379)
Q Consensus 830 ~~G~vIil~~~~~~~~~~l~~l 851 (1379)
|.|+++++++ +...++++
T Consensus 378 --g~~~~~~~~~--~~~~~~~~ 395 (414)
T 3eiq_A 378 --GVAINMVTEE--DKRTLRDI 395 (414)
T ss_dssp ---CEEEEECST--HHHHHHHH
T ss_pred --ceEEEEEcHH--HHHHHHHH
Confidence 9999998765 33444433
No 17
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.7e-41 Score=390.15 Aligned_cols=334 Identities=18% Similarity=0.256 Sum_probs=267.4
Q ss_pred cccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCC-CcEEEEcCCCccHHHHHHHHHHHHHhc--CCc
Q 039491 370 KEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENG-DSVFVAAHTSAGKTVVAEYAFALATKH--CTR 445 (1379)
Q Consensus 370 ~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g-~sVlV~ApTGSGKTlvae~aI~~~l~~--~~r 445 (1379)
..+|..+++.+.+.+.+.+ .+|. |+++|++|++.+.++ ++++++||||+|||++|.+++...+.. +.+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~--------~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~ 76 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRN--------KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIE 76 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHH--------HTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCC
T ss_pred cCchhhcCCCHHHHHHHHH--------cCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCc
Confidence 4579999999999998887 5775 999999999999877 799999999999999999998887753 789
Q ss_pred EEEecchHHHHHHHHHHHhccc-----cEEEEecCcccCC------CCceeeecHHHHHHHHhcCcccCCCccEEEEecc
Q 039491 446 AVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSLRP------EASCLIMTTEILRSMLYRGADIIRDIEWVIFDEV 514 (1379)
Q Consensus 446 aIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~in~------~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEa 514 (1379)
+||++|+++|+.|+++.+++.+ .++.++|+..... .++|+|+||+.|.+++.++...+.++++||+|||
T Consensus 77 ~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEa 156 (367)
T 1hv8_A 77 AIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEA 156 (367)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETH
T ss_pred EEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCc
Confidence 9999999999999999999865 6788888776432 5789999999999999888777899999999999
Q ss_pred CCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcc
Q 039491 515 HYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEA 594 (1379)
Q Consensus 515 H~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~ 594 (1379)
|++.+..+...+..++..+++..++++||||+++.. .+++.........+... ....+.+.++...
T Consensus 157 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---------- 222 (367)
T 1hv8_A 157 DEMLNMGFIKDVEKILNACNKDKRILLFSATMPREI--LNLAKKYMGDYSFIKAK--INANIEQSYVEVN---------- 222 (367)
T ss_dssp HHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHH--HHHHHHHCCSEEEEECC--SSSSSEEEEEECC----------
T ss_pred hHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHH--HHHHHHHcCCCeEEEec--CCCCceEEEEEeC----------
Confidence 999888888888888888888999999999998653 23333222222222111 1112222211100
Q ss_pred cchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHH
Q 039491 595 FIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWL 674 (1379)
Q Consensus 595 f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1379)
....+.
T Consensus 223 --------------------------------------------------------------------------~~~~~~ 228 (367)
T 1hv8_A 223 --------------------------------------------------------------------------ENERFE 228 (367)
T ss_dssp --------------------------------------------------------------------------GGGHHH
T ss_pred --------------------------------------------------------------------------hHHHHH
Confidence 112233
Q ss_pred HHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEe
Q 039491 675 TLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIH 754 (1379)
Q Consensus 675 ~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavh 754 (1379)
.+.+.+. ....++||||++++.|+.+++.|...++ ++..+
T Consensus 229 ~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~---------------------------------------~~~~~ 268 (367)
T 1hv8_A 229 ALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGF---------------------------------------KAGAI 268 (367)
T ss_dssp HHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTC---------------------------------------CEEEE
T ss_pred HHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCC---------------------------------------CeEEe
Confidence 4444444 4567999999999999999999876432 36789
Q ss_pred cCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEE
Q 039491 755 HAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTV 834 (1379)
Q Consensus 755 HggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~v 834 (1379)
||++++.+|+.++..|++|..+|||||+++++|+|+|++++||+ |+. |.++.+|+||+|||||.|.+ |.+
T Consensus 269 ~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~----~~~----~~s~~~~~Q~~GR~~R~g~~--g~~ 338 (367)
T 1hv8_A 269 HGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVIN----YHL----PQNPESYMHRIGRTGRAGKK--GKA 338 (367)
T ss_dssp CSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEE----SSC----CSCHHHHHHHSTTTCCSSSC--CEE
T ss_pred eCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEE----ecC----CCCHHHhhhcccccccCCCc--cEE
Confidence 99999999999999999999999999999999999999999999 888 89999999999999999975 888
Q ss_pred EEEecCCCCCHHHHHHH
Q 039491 835 VVLCRDEIPGESDLKHI 851 (1379)
Q Consensus 835 Iil~~~~~~~~~~l~~l 851 (1379)
++++++. +...+..+
T Consensus 339 ~~~~~~~--~~~~~~~i 353 (367)
T 1hv8_A 339 ISIINRR--EYKKLRYI 353 (367)
T ss_dssp EEEECTT--SHHHHHHH
T ss_pred EEEEcHH--HHHHHHHH
Confidence 8888764 44444444
No 18
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=5.2e-41 Score=418.40 Aligned_cols=338 Identities=18% Similarity=0.196 Sum_probs=258.2
Q ss_pred CChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHH--CCCcEEEEcCCCccHHHHHHHHHHHHHhcC-------CcEE
Q 039491 378 STEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLE--NGDSVFVAAHTSAGKTVVAEYAFALATKHC-------TRAV 447 (1379)
Q Consensus 378 ~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~--~g~sVlV~ApTGSGKTlvae~aI~~~l~~~-------~raI 447 (1379)
+.+.+.+.+.+ ++|+ |+|+|.+||+.+. .+++++++||||+|||++|+++++..+..+ .++|
T Consensus 79 l~~~l~~~l~~--------~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~l 150 (563)
T 3i5x_A 79 LDKEIHKAITR--------MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAV 150 (563)
T ss_dssp SCHHHHHHHHT--------TCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEE
T ss_pred CCHHHHHHHHH--------CCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEE
Confidence 77777787776 7888 9999999999998 678999999999999999999999887543 4899
Q ss_pred EecchHHHHHHHHHHHhccc---------cEEEEecCccc--------CCCCceeeecHHHHHHHHhcC-cccCCCccEE
Q 039491 448 YTAPIKTISNQKYRDFSGKF---------DVGLLTGDVSL--------RPEASCLIMTTEILRSMLYRG-ADIIRDIEWV 509 (1379)
Q Consensus 448 ylsPtkaLsnQk~~~~~~~f---------~VglltGdv~i--------n~~a~IlV~TpEiL~smL~~~-~~~l~~v~lV 509 (1379)
|++|+++|+.|+++.+++.+ .+..++|+... ...++|+|+||++|.+++.+. ...++++++|
T Consensus 151 il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~l 230 (563)
T 3i5x_A 151 IVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYK 230 (563)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEE
T ss_pred EEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEE
Confidence 99999999999999998853 46777777653 235799999999999988765 3467899999
Q ss_pred EEeccCCCCCccchhHHHHHHHHcC-------ccceEEEecccCCChH-HHHHHHhhhcCCcEEEEcc-C--CCCcC---
Q 039491 510 IFDEVHYVNDIERGVVWEEVIIMLP-------RHINIVLLSATVPNTV-EFADWIGRTKQKKIRVTGT-T--KRPVP--- 575 (1379)
Q Consensus 510 I~DEaH~l~d~~rG~v~eeii~~Lp-------~~vqiIlLSATvpN~~-efa~wl~~~~~~~i~vi~t-~--~Rpvp--- 575 (1379)
||||||++.+++++..++.++..++ ..+|+++||||+++.. +++.++ ...+..+... . ..+..
T Consensus 231 ViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 307 (563)
T 3i5x_A 231 VLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNI---MNKKECLFLDTVDKNEPEAHER 307 (563)
T ss_dssp EEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTT---CCSSEEEEEESSCSSSCSSCTT
T ss_pred EEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHh---cCCCceEEEeccCCCCcccccc
Confidence 9999999999999999999887764 3679999999999864 333333 2322222211 1 11110
Q ss_pred ceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCcccccccc
Q 039491 576 LEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKN 655 (1379)
Q Consensus 576 Le~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~ 655 (1379)
+.+.+.. .+.
T Consensus 308 ~~~~~~~-------~~~--------------------------------------------------------------- 317 (563)
T 3i5x_A 308 IDQSVVI-------SEK--------------------------------------------------------------- 317 (563)
T ss_dssp EEEEEEE-------ESS---------------------------------------------------------------
T ss_pred CceEEEE-------Cch---------------------------------------------------------------
Confidence 1111100 000
Q ss_pred CCCCCCCcccccchhHHHHHHHHHHHh-CCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCC
Q 039491 656 SGGSQNNWGLRRSEVSIWLTLINKLSK-KSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSD 734 (1379)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~Li~~L~~-~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~ed 734 (1379)
........+..+...+.. ....++||||+|++.|+.++..|.....
T Consensus 318 ---------~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~------------------------ 364 (563)
T 3i5x_A 318 ---------FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK------------------------ 364 (563)
T ss_dssp ---------TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT------------------------
T ss_pred ---------hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc------------------------
Confidence 000011223333444433 4467999999999999999999865200
Q ss_pred CCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHH
Q 039491 735 RNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPG 814 (1379)
Q Consensus 735 r~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~ 814 (1379)
-...+..|||+|++.+|+.++..|++|.++|||||+++++|||+|++++||+ ||. |.++.
T Consensus 365 ------------~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~~~----p~s~~ 424 (563)
T 3i5x_A 365 ------------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ----IGV----PSELA 424 (563)
T ss_dssp ------------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE----ESC----CSSTT
T ss_pred ------------CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE----ECC----CCchh
Confidence 0234788999999999999999999999999999999999999999999999 998 89999
Q ss_pred HHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHHh
Q 039491 815 EYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIV 853 (1379)
Q Consensus 815 eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li~ 853 (1379)
+|+||+|||||.|.. |.|++++.+. +...++.+..
T Consensus 425 ~y~Qr~GRagR~g~~--g~~i~~~~~~--e~~~~~~l~~ 459 (563)
T 3i5x_A 425 NYIHRIGRTARSGKE--GSSVLFICKD--ELPFVRELED 459 (563)
T ss_dssp HHHHHHTTSSCTTCC--EEEEEEEEGG--GHHHHHHHHH
T ss_pred hhhhhcCccccCCCC--ceEEEEEchh--HHHHHHHHHH
Confidence 999999999999965 9999998765 4566666653
No 19
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=2e-40 Score=415.20 Aligned_cols=340 Identities=18% Similarity=0.189 Sum_probs=258.5
Q ss_pred CChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHH--CCCcEEEEcCCCccHHHHHHHHHHHHHhc-------CCcEE
Q 039491 378 STEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLE--NGDSVFVAAHTSAGKTVVAEYAFALATKH-------CTRAV 447 (1379)
Q Consensus 378 ~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~--~g~sVlV~ApTGSGKTlvae~aI~~~l~~-------~~raI 447 (1379)
+.+.+.+.+.+ ++|+ |+|+|++||+.+. .|++++++||||+|||++|.++++..+.. +.++|
T Consensus 28 l~~~l~~~l~~--------~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~l 99 (579)
T 3sqw_A 28 LDKEIHKAITR--------MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAV 99 (579)
T ss_dssp SCHHHHHHHHT--------TTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEE
T ss_pred CCHHHHHHHHH--------CCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEE
Confidence 77777777776 7888 9999999999998 78899999999999999999999887744 35899
Q ss_pred EecchHHHHHHHHHHHhccc---------cEEEEecCcccC--------CCCceeeecHHHHHHHHhcC-cccCCCccEE
Q 039491 448 YTAPIKTISNQKYRDFSGKF---------DVGLLTGDVSLR--------PEASCLIMTTEILRSMLYRG-ADIIRDIEWV 509 (1379)
Q Consensus 448 ylsPtkaLsnQk~~~~~~~f---------~VglltGdv~in--------~~a~IlV~TpEiL~smL~~~-~~~l~~v~lV 509 (1379)
|++|+++|+.|+++.+++.+ .+..+.|+.... ..++|+|+||++|.+++.+. ...++.+++|
T Consensus 100 vl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~l 179 (579)
T 3sqw_A 100 IVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYK 179 (579)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEE
T ss_pred EEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEE
Confidence 99999999999999998753 466677776532 25789999999999988764 4468899999
Q ss_pred EEeccCCCCCccchhHHHHHHHHcCc-------cceEEEecccCCChHHHHHHHhhhcCCcEEEEccC---CCCc---Cc
Q 039491 510 IFDEVHYVNDIERGVVWEEVIIMLPR-------HINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTT---KRPV---PL 576 (1379)
Q Consensus 510 I~DEaH~l~d~~rG~v~eeii~~Lp~-------~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~---~Rpv---pL 576 (1379)
||||||++.+++++..++.++..++. .+|+++||||+++... ..+......+..+.... ..+. .+
T Consensus 180 ViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~i 257 (579)
T 3sqw_A 180 VLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQ--KLANNIMNKKECLFLDTVDKNEPEAHERI 257 (579)
T ss_dssp EEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHH--HHTTTTCCSSEEEEEESSCSSSCSSCTTE
T ss_pred EEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHH--HHHHHHcCCCceEEEeecCcccccccccc
Confidence 99999999999999999988877643 6799999999998642 22332223322222111 0110 01
Q ss_pred eEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccC
Q 039491 577 EHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNS 656 (1379)
Q Consensus 577 e~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~ 656 (1379)
.+.+.... .
T Consensus 258 ~~~~~~~~-------~---------------------------------------------------------------- 266 (579)
T 3sqw_A 258 DQSVVISE-------K---------------------------------------------------------------- 266 (579)
T ss_dssp EEEEEEES-------S----------------------------------------------------------------
T ss_pred ceEEEEec-------c----------------------------------------------------------------
Confidence 11110000 0
Q ss_pred CCCCCCcccccchhHHHHHHHHHHHh-CCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCC
Q 039491 657 GGSQNNWGLRRSEVSIWLTLINKLSK-KSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDR 735 (1379)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~Li~~L~~-~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr 735 (1379)
........+..+...+.. ....++||||+|++.|+.++..|.....
T Consensus 267 --------~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~------------------------- 313 (579)
T 3sqw_A 267 --------FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK------------------------- 313 (579)
T ss_dssp --------TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT-------------------------
T ss_pred --------hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc-------------------------
Confidence 000011223334444443 4467999999999999999999865200
Q ss_pred CchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHH
Q 039491 736 NLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGE 815 (1379)
Q Consensus 736 ~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~e 815 (1379)
-...+..+||+|++.+|+.++..|++|.++|||||+++++|||+|++++||+ ||. |.++..
T Consensus 314 -----------~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~----~~~----p~s~~~ 374 (579)
T 3sqw_A 314 -----------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ----IGV----PSELAN 374 (579)
T ss_dssp -----------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE----ESC----CSSTTH
T ss_pred -----------CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEE----cCC----CCCHHH
Confidence 0224778999999999999999999999999999999999999999999999 998 899999
Q ss_pred HHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHHhc
Q 039491 816 YTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVG 854 (1379)
Q Consensus 816 yiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li~g 854 (1379)
|+||+|||||.|.+ |.|++++.+. +...++.+...
T Consensus 375 y~Qr~GRagR~g~~--g~~i~~~~~~--e~~~~~~l~~~ 409 (579)
T 3sqw_A 375 YIHRIGRTARSGKE--GSSVLFICKD--ELPFVRELEDA 409 (579)
T ss_dssp HHHHHTTSSCTTCC--EEEEEEEEGG--GHHHHHHHHHH
T ss_pred hhhhccccccCCCC--ceEEEEEccc--HHHHHHHHHHH
Confidence 99999999999975 9999998765 55666666543
No 20
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=5.9e-42 Score=418.85 Aligned_cols=335 Identities=17% Similarity=0.191 Sum_probs=151.8
Q ss_pred cccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCC--CcEEEEcCCCccHHHHHHHHHHHHHhc--
Q 039491 368 QQKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENG--DSVFVAAHTSAGKTVVAEYAFALATKH-- 442 (1379)
Q Consensus 368 ~~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g--~sVlV~ApTGSGKTlvae~aI~~~l~~-- 442 (1379)
....+|..+.+.+.+.+++.+ ++|. |+++|.+|++.+..+ ++++++||||||||++|.++++..+..
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~--------~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~ 160 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYA--------MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN 160 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHH--------TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS
T ss_pred cCcCCHHHcCCCHHHHHHHHH--------cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC
Confidence 356789999999999999987 6787 999999999999887 899999999999999999999888754
Q ss_pred -CCcEEEecchHHHHHHHHHHHhccc------cEEEEecCcccCC----CCceeeecHHHHHHHHhc-CcccCCCccEEE
Q 039491 443 -CTRAVYTAPIKTISNQKYRDFSGKF------DVGLLTGDVSLRP----EASCLIMTTEILRSMLYR-GADIIRDIEWVI 510 (1379)
Q Consensus 443 -~~raIylsPtkaLsnQk~~~~~~~f------~VglltGdv~in~----~a~IlV~TpEiL~smL~~-~~~~l~~v~lVI 510 (1379)
+.++||++|+++|+.|+++.+++.. .++...|+..... ..+|+|+||++|.+++.+ +...+.++++||
T Consensus 161 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iV 240 (479)
T 3fmp_B 161 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (479)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEE
T ss_pred CCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEE
Confidence 3489999999999999987776532 6777887766433 368999999999999866 345568999999
Q ss_pred EeccCCCCC-ccchhHHHHHHHHcCccceEEEecccCCChH-HHHHHHhhhcCCcEEEEccCCC--CcCceEEEeecCce
Q 039491 511 FDEVHYVND-IERGVVWEEVIIMLPRHINIVLLSATVPNTV-EFADWIGRTKQKKIRVTGTTKR--PVPLEHCLYYSGEF 586 (1379)
Q Consensus 511 ~DEaH~l~d-~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~-efa~wl~~~~~~~i~vi~t~~R--pvpLe~~l~~~~~l 586 (1379)
|||||++.+ ..+...+..+...++..+|++++|||+++.. .++... ...+..+...... ...+.+++....
T Consensus 241 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~-- 315 (479)
T 3fmp_B 241 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKV---VPDPNVIKLKREEETLDTIKQYYVLCS-- 315 (479)
T ss_dssp ECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHH---SSSEEEEEEC-------------------
T ss_pred EECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHH---cCCCeEEeccccccCcCCceEEEEEeC--
Confidence 999999876 4555666677777888999999999998754 333332 2333222211110 001111100000
Q ss_pred eeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccc
Q 039491 587 YKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLR 666 (1379)
Q Consensus 587 ~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~ 666 (1379)
T Consensus 316 -------------------------------------------------------------------------------- 315 (479)
T 3fmp_B 316 -------------------------------------------------------------------------------- 315 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHh
Q 039491 667 RSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSL 746 (1379)
Q Consensus 667 ~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~l 746 (1379)
........+...+......++||||++++.|+.++..|...+
T Consensus 316 -~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~------------------------------------- 357 (479)
T 3fmp_B 316 -SRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEG------------------------------------- 357 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -CHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCC-------------------------------------
Confidence 001112233334444445789999999999999999887632
Q ss_pred hccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCccccc--CCHHHHHHHhcccC
Q 039491 747 LRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQ--LLPGEYTQMAGRAG 824 (1379)
Q Consensus 747 L~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rp--ls~~eyiQmaGRAG 824 (1379)
.++++|||+|++.+|+.++..|++|.++|||||+++++|||+|++++||+ ||.+..+. .+..+|+||+||||
T Consensus 358 --~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~----~d~p~~~~~~~s~~~~~Qr~GRag 431 (479)
T 3fmp_B 358 --HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN----FDLPVDKDGNPDNETYLHRIGRTG 431 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --ccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEE----ecCCCCCccCCCHHHHHHHhcccc
Confidence 24678999999999999999999999999999999999999999999999 88721111 46689999999999
Q ss_pred CCCCCCcEEEEEEecCC
Q 039491 825 RRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 825 RrG~d~~G~vIil~~~~ 841 (1379)
|.|.. |.|++++++.
T Consensus 432 R~g~~--G~~i~~~~~~ 446 (479)
T 3fmp_B 432 RFGKR--GLAVNMVDSK 446 (479)
T ss_dssp -----------------
T ss_pred cCCCC--ceEEEEEcCc
Confidence 99965 9999998754
No 21
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=7.9e-40 Score=378.38 Aligned_cols=316 Identities=19% Similarity=0.232 Sum_probs=249.7
Q ss_pred hHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHH
Q 039491 380 EAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQ 458 (1379)
Q Consensus 380 ~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQ 458 (1379)
+.+.+.+.+ ++|. |+++|++|++.+.+|++++++||||+|||++|.++++. .+.++||++|+++|++|
T Consensus 3 ~~i~~~l~~--------~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~---~~~~~liv~P~~~L~~q 71 (337)
T 2z0m_A 3 EKIEQAIRE--------MGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILE---LGMKSLVVTPTRELTRQ 71 (337)
T ss_dssp HHHHHHHHH--------TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHH---HTCCEEEECSSHHHHHH
T ss_pred HHHHHHHHH--------cCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHh---hcCCEEEEeCCHHHHHH
Confidence 445555554 7887 99999999999999999999999999999998887765 47899999999999999
Q ss_pred HHHHHhccc-----cEEEEecCcccC------CCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHH
Q 039491 459 KYRDFSGKF-----DVGLLTGDVSLR------PEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWE 527 (1379)
Q Consensus 459 k~~~~~~~f-----~VglltGdv~in------~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~e 527 (1379)
+++.+++.+ .++.++|+.... ..++|+|+||+.|.+++.++...+.++++||+||||++.++++...+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~ 151 (337)
T 2z0m_A 72 VASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIK 151 (337)
T ss_dssp HHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHH
Confidence 999998653 788888876532 347999999999999988877778899999999999999888888888
Q ss_pred HHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHH
Q 039491 528 EVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAY 607 (1379)
Q Consensus 528 eii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l 607 (1379)
.++..++...++++||||+++... +++.........+ ........+.+.+....
T Consensus 152 ~~~~~~~~~~~~~~~SAT~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------------------- 205 (337)
T 2z0m_A 152 IILAQTSNRKITGLFSATIPEEIR--KVVKDFITNYEEI-EACIGLANVEHKFVHVK----------------------- 205 (337)
T ss_dssp HHHHHCTTCSEEEEEESCCCHHHH--HHHHHHSCSCEEE-ECSGGGGGEEEEEEECS-----------------------
T ss_pred HHHhhCCcccEEEEEeCcCCHHHH--HHHHHhcCCceee-ecccccCCceEEEEEeC-----------------------
Confidence 888999989999999999987532 2333222222222 11111112222211100
Q ss_pred HhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCC
Q 039491 608 KRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLP 687 (1379)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~p 687 (1379)
..+...+..+......+
T Consensus 206 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 222 (337)
T 2z0m_A 206 ---------------------------------------------------------------DDWRSKVQALRENKDKG 222 (337)
T ss_dssp ---------------------------------------------------------------SSSHHHHHHHHTCCCSS
T ss_pred ---------------------------------------------------------------hHHHHHHHHHHhCCCCc
Confidence 00012234455566789
Q ss_pred EEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHH
Q 039491 688 VVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIE 767 (1379)
Q Consensus 688 vIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve 767 (1379)
+||||++++.|+.++..|.+ +..+||+|++.+|..++
T Consensus 223 ~lvf~~~~~~~~~l~~~l~~-------------------------------------------~~~~~~~~~~~~r~~~~ 259 (337)
T 2z0m_A 223 VIVFVRTRNRVAKLVRLFDN-------------------------------------------AIELRGDLPQSVRNRNI 259 (337)
T ss_dssp EEEECSCHHHHHHHHTTCTT-------------------------------------------EEEECTTSCHHHHHHHH
T ss_pred EEEEEcCHHHHHHHHHHhhh-------------------------------------------hhhhcCCCCHHHHHHHH
Confidence 99999999999999877642 56799999999999999
Q ss_pred HHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHH
Q 039491 768 MLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESD 847 (1379)
Q Consensus 768 ~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~ 847 (1379)
+.|++|.++|||||+++++|+|+|++++||+ |+. |.++.+|+||+|||||.|.+ |.|++++.. +...
T Consensus 260 ~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~----~~~----~~s~~~~~Q~~GR~gR~g~~--g~~~~~~~~---~~~~ 326 (337)
T 2z0m_A 260 DAFREGEYDMLITTDVASRGLDIPLVEKVIN----FDA----PQDLRTYIHRIGRTGRMGRK--GEAITFILN---EYWL 326 (337)
T ss_dssp HHHHTTSCSEEEECHHHHTTCCCCCBSEEEE----SSC----CSSHHHHHHHHTTBCGGGCC--EEEEEEESS---CHHH
T ss_pred HHHHcCCCcEEEEcCccccCCCccCCCEEEE----ecC----CCCHHHhhHhcCccccCCCC--ceEEEEEeC---cHHH
Confidence 9999999999999999999999999999999 888 89999999999999999976 888888872 4455
Q ss_pred HHHH
Q 039491 848 LKHI 851 (1379)
Q Consensus 848 l~~l 851 (1379)
++++
T Consensus 327 ~~~i 330 (337)
T 2z0m_A 327 EKEV 330 (337)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 22
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.1e-41 Score=400.53 Aligned_cols=330 Identities=20% Similarity=0.257 Sum_probs=159.5
Q ss_pred cccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh---cCCc
Q 039491 370 KEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK---HCTR 445 (1379)
Q Consensus 370 ~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~---~~~r 445 (1379)
...|.++++.+.+.+.+.. ++|. |+++|++|++.+.+|++++++||||+|||++|.++++..+. .+.+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~--------~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~ 91 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFG--------YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQ 91 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHH--------HTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCC
T ss_pred cCChhhcCCCHHHHHHHHH--------cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCC
Confidence 4579999999999999887 6775 99999999999999999999999999999999999988774 4679
Q ss_pred EEEecchHHHHHHHHHHHhccc-----cEEEEecCcccCC------CCceeeecHHHHHHHHhcCcccCCCccEEEEecc
Q 039491 446 AVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSLRP------EASCLIMTTEILRSMLYRGADIIRDIEWVIFDEV 514 (1379)
Q Consensus 446 aIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~in~------~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEa 514 (1379)
+||++|+++|++|+++.+.+.+ .++.++|+..... +++|+|+||+.|.+++.++...+.++++||+|||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEa 171 (394)
T 1fuu_A 92 ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEA 171 (394)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEECh
Confidence 9999999999999999998764 6888888876422 4789999999999999888777889999999999
Q ss_pred CCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCc--CceEEEeecCceeeeccC
Q 039491 515 HYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPV--PLEHCLYYSGEFYKVCEN 592 (1379)
Q Consensus 515 H~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~Rpv--pLe~~l~~~~~l~~i~d~ 592 (1379)
|++.+..+...+..++..+++..++++||||+++.. .+++......+..+........ .+.+++.. ...
T Consensus 172 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 242 (394)
T 1fuu_A 172 DEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDV--LEVTTKFMRNPVRILVKKDELTLEGIKQFYVN-------VEE 242 (394)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHH--HHHHHHHCCSCEEEEECC------------------------
T ss_pred HHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHH--HHHHHHhcCCCeEEEecCccccCCCceEEEEE-------cCc
Confidence 999888888889999999999999999999998753 2333333333433322211100 00000000 000
Q ss_pred cccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHH
Q 039491 593 EAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSI 672 (1379)
Q Consensus 593 ~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1379)
....
T Consensus 243 ----------------------------------------------------------------------------~~~~ 246 (394)
T 1fuu_A 243 ----------------------------------------------------------------------------EEYK 246 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------------------------------hhhH
Confidence 0001
Q ss_pred HHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceE
Q 039491 673 WLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIA 752 (1379)
Q Consensus 673 ~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIa 752 (1379)
...+...+......++||||++++.|+.++..|...++ ++.
T Consensus 247 ~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~---------------------------------------~~~ 287 (394)
T 1fuu_A 247 YECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKF---------------------------------------TVS 287 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCC---------------------------------------eEE
Confidence 11222223333456899999999999999998866332 256
Q ss_pred EecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcE
Q 039491 753 IHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIG 832 (1379)
Q Consensus 753 vhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G 832 (1379)
.+||+|++.+|+.++..|++|..+|||||+++++|+|+|++++||+ ||. |.++.+|+||+|||||.|.+ |
T Consensus 288 ~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~----~~~----p~s~~~~~Qr~GR~~R~g~~--g 357 (394)
T 1fuu_A 288 AIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN----YDL----PANKENYIHRIGRGGRFGRK--G 357 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEE----eCC----CCCHHHHHHHcCcccCCCCC--c
Confidence 7999999999999999999999999999999999999999999999 888 88999999999999999965 9
Q ss_pred EEEEEecCC
Q 039491 833 TVVVLCRDE 841 (1379)
Q Consensus 833 ~vIil~~~~ 841 (1379)
.|+++++++
T Consensus 358 ~~~~~~~~~ 366 (394)
T 1fuu_A 358 VAINFVTNE 366 (394)
T ss_dssp ---------
T ss_pred eEEEEEchh
Confidence 999888754
No 23
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.6e-39 Score=402.01 Aligned_cols=332 Identities=19% Similarity=0.243 Sum_probs=256.0
Q ss_pred cccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec
Q 039491 372 AWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA 450 (1379)
Q Consensus 372 ~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls 450 (1379)
+|+.+++.+.+...+.+ .|+|. |+++|.++|+.+.+|++++++||||+|||++|.++++. ...++||++
T Consensus 3 ~fe~l~L~~~~~~~l~~-------~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~g~~lvi~ 72 (523)
T 1oyw_A 3 QAEVLNLESGAKQVLQE-------TFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL---LNGLTVVVS 72 (523)
T ss_dssp CCCCSSHHHHHHHHHHH-------TTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH---SSSEEEEEC
T ss_pred ChhhCCCCHHHHHHHHH-------HhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH---hCCCEEEEC
Confidence 56777777776666665 37887 99999999999999999999999999999999888764 356899999
Q ss_pred chHHHHHHHHHHHhccc-cEEEEecCccc-----------CCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCC
Q 039491 451 PIKTISNQKYRDFSGKF-DVGLLTGDVSL-----------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 451 PtkaLsnQk~~~~~~~f-~VglltGdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~ 518 (1379)
|+++|++|+++.+++.. .++.++|+... ....+|+|+|||+|.+..........++++|||||||++.
T Consensus 73 P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~ 152 (523)
T 1oyw_A 73 PLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCIS 152 (523)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGC
T ss_pred ChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccC
Confidence 99999999999999877 88888887652 2357999999999853322221223689999999999999
Q ss_pred Ccc--chhHHHH---HHHHcCccceEEEecccCCCh--HHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeecc
Q 039491 519 DIE--RGVVWEE---VIIMLPRHINIVLLSATVPNT--VEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCE 591 (1379)
Q Consensus 519 d~~--rG~v~ee---ii~~Lp~~vqiIlLSATvpN~--~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d 591 (1379)
+++ +...+.. +...+| ++++++||||+++. .++..|++.. .+...+....+| .+...+. .
T Consensus 153 ~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~--~~~~~~~~~~r~-~l~~~v~---------~ 219 (523)
T 1oyw_A 153 QWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLN--DPLIQISSFDRP-NIRYMLM---------E 219 (523)
T ss_dssp TTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCC--SCEEEECCCCCT-TEEEEEE---------E
T ss_pred cCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCC--CCeEEeCCCCCC-ceEEEEE---------e
Confidence 875 2333332 333444 58999999998876 4677777632 233333333333 1211110 0
Q ss_pred CcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhH
Q 039491 592 NEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVS 671 (1379)
Q Consensus 592 ~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1379)
...
T Consensus 220 -----------------------------------------------------------------------------~~~ 222 (523)
T 1oyw_A 220 -----------------------------------------------------------------------------KFK 222 (523)
T ss_dssp -----------------------------------------------------------------------------CSS
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 011
Q ss_pred HHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccce
Q 039491 672 IWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGI 751 (1379)
Q Consensus 672 ~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGI 751 (1379)
....+++.+......++||||+|++.|+.++..|...++ .+
T Consensus 223 ~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~---------------------------------------~~ 263 (523)
T 1oyw_A 223 PLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGI---------------------------------------SA 263 (523)
T ss_dssp HHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTC---------------------------------------CE
T ss_pred HHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCC---------------------------------------CE
Confidence 233456666666678999999999999999999976443 26
Q ss_pred EEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCc
Q 039491 752 AIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKI 831 (1379)
Q Consensus 752 avhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~ 831 (1379)
+.|||+|++.+|+.++..|++|.++|||||++++||||+|++++||+ ||. |.+..+|+||+|||||.|.+
T Consensus 264 ~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~----~~~----p~s~~~y~Qr~GRaGR~g~~-- 333 (523)
T 1oyw_A 264 AAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVH----FDI----PRNIESYYQETGRAGRDGLP-- 333 (523)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEE----SSC----CSSHHHHHHHHTTSCTTSSC--
T ss_pred EEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEE----ECC----CCCHHHHHHHhccccCCCCC--
Confidence 78999999999999999999999999999999999999999999999 998 89999999999999999975
Q ss_pred EEEEEEecCCCCCHHHHHHHHhc
Q 039491 832 GTVVVLCRDEIPGESDLKHIIVG 854 (1379)
Q Consensus 832 G~vIil~~~~~~~~~~l~~li~g 854 (1379)
|.+++++++. +...++.++..
T Consensus 334 ~~~~l~~~~~--d~~~~~~~~~~ 354 (523)
T 1oyw_A 334 AEAMLFYDPA--DMAWLRRCLEE 354 (523)
T ss_dssp EEEEEEECHH--HHHHHHHHHHT
T ss_pred ceEEEEeCHH--HHHHHHHHHhc
Confidence 9999988654 44566666664
No 24
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=3.6e-39 Score=403.61 Aligned_cols=338 Identities=18% Similarity=0.244 Sum_probs=256.8
Q ss_pred ccccccc--cCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCc
Q 039491 369 QKEAWVV--SGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTR 445 (1379)
Q Consensus 369 ~~~~w~~--~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~r 445 (1379)
....|.. ++..+.+...+.+ .|+|. |+|+|+++|+.+.+|++++++||||+|||++|.++++. ...+
T Consensus 17 ~~~~w~~~~~~l~~~l~~~L~~-------~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~---~~g~ 86 (591)
T 2v1x_A 17 SPAAWNKEDFPWSGKVKDILQN-------VFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC---SDGF 86 (591)
T ss_dssp CGGGGCCSCSTTHHHHHHHHHH-------TSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT---SSSE
T ss_pred chhccccccCCCCHHHHHHHHH-------HhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH---cCCc
Confidence 4456765 5555666666655 37887 99999999999999999999999999999999888754 4678
Q ss_pred EEEecchHHHHHHHHHHHhccc-cEEEEecCccc-------------CCCCceeeecHHHHH------HHHhcCcccCCC
Q 039491 446 AVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVSL-------------RPEASCLIMTTEILR------SMLYRGADIIRD 505 (1379)
Q Consensus 446 aIylsPtkaLsnQk~~~~~~~f-~VglltGdv~i-------------n~~a~IlV~TpEiL~------smL~~~~~~l~~ 505 (1379)
+||++|+++|+.|+++.+++.. .++.++|+... +...+|+|+|||+|. +++.+ ...+.+
T Consensus 87 ~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~ 165 (591)
T 2v1x_A 87 TLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARR 165 (591)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTC
T ss_pred EEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccC
Confidence 9999999999999999999876 88899888652 457899999999874 22322 234678
Q ss_pred ccEEEEeccCCCCCcc--chhHHHH--HHHHcCccceEEEecccCCCh--HHHHHHHhhhcCCcEEEEccCCCCcCceEE
Q 039491 506 IEWVIFDEVHYVNDIE--RGVVWEE--VIIMLPRHINIVLLSATVPNT--VEFADWIGRTKQKKIRVTGTTKRPVPLEHC 579 (1379)
Q Consensus 506 v~lVI~DEaH~l~d~~--rG~v~ee--ii~~Lp~~vqiIlLSATvpN~--~efa~wl~~~~~~~i~vi~t~~RpvpLe~~ 579 (1379)
+++|||||||++.+++ +...+.. .+....+.+++|+||||+++. .++..|++.. .+..+.....+| .+...
T Consensus 166 i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~--~~~~~~~~~~r~-nl~~~ 242 (591)
T 2v1x_A 166 FTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIE--KCFTFTASFNRP-NLYYE 242 (591)
T ss_dssp EEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCC--SCEEEECCCCCT-TEEEE
T ss_pred CcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCC--CcEEEecCCCCc-ccEEE
Confidence 9999999999999876 4444443 333344579999999999875 3556666532 222222222222 22111
Q ss_pred EeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCC
Q 039491 580 LYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGS 659 (1379)
Q Consensus 580 l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~ 659 (1379)
+....
T Consensus 243 v~~~~--------------------------------------------------------------------------- 247 (591)
T 2v1x_A 243 VRQKP--------------------------------------------------------------------------- 247 (591)
T ss_dssp EEECC---------------------------------------------------------------------------
T ss_pred EEeCC---------------------------------------------------------------------------
Confidence 10000
Q ss_pred CCCcccccchhHHHHHHHHHHHhC-CCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCch
Q 039491 660 QNNWGLRRSEVSIWLTLINKLSKK-SLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLP 738 (1379)
Q Consensus 660 ~~~~~~~~~~~~~~~~Li~~L~~~-~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lp 738 (1379)
......+..++..+... ...++||||+|++.|+.++..|...++
T Consensus 248 -------~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~---------------------------- 292 (591)
T 2v1x_A 248 -------SNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGI---------------------------- 292 (591)
T ss_dssp -------SSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTC----------------------------
T ss_pred -------CcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCC----------------------------
Confidence 00123445566666532 567999999999999999999976443
Q ss_pred hHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHH
Q 039491 739 QIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQ 818 (1379)
Q Consensus 739 qi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQ 818 (1379)
+++.+||+|++.+|+.++..|++|.++|||||++++||||+|++++||+ |+. |.+...|+|
T Consensus 293 -----------~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~----~~~----p~s~~~y~Q 353 (591)
T 2v1x_A 293 -----------HAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIH----HSM----SKSMENYYQ 353 (591)
T ss_dssp -----------CEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEE----SSC----CSSHHHHHH
T ss_pred -----------CEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEE----eCC----CCCHHHHHH
Confidence 3678999999999999999999999999999999999999999999999 999 999999999
Q ss_pred HhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHHh
Q 039491 819 MAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIV 853 (1379)
Q Consensus 819 maGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li~ 853 (1379)
|+|||||.|.. |.|++++... +...+..++.
T Consensus 354 r~GRaGR~G~~--g~~i~l~~~~--D~~~~~~~~~ 384 (591)
T 2v1x_A 354 ESGRAGRDDMK--ADCILYYGFG--DIFRISSMVV 384 (591)
T ss_dssp HHTTSCTTSSC--EEEEEEECHH--HHHHHHHHTT
T ss_pred HhccCCcCCCC--ceEEEEEChH--HHHHHHHHHh
Confidence 99999999975 9999998653 4455556654
No 25
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=6.7e-39 Score=384.21 Aligned_cols=296 Identities=16% Similarity=0.144 Sum_probs=228.2
Q ss_pred hccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc----cE
Q 039491 394 ALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF----DV 469 (1379)
Q Consensus 394 a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f----~V 469 (1379)
...++|+|+++|++|++.+.+|++++++||||+|||++|++++...+..+.++||++|+++|+.|+++.+++.+ ++
T Consensus 15 ~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v 94 (414)
T 3oiy_A 15 KKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKI 94 (414)
T ss_dssp HHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCE
T ss_pred HHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceE
Confidence 34579999999999999999999999999999999999999988888889999999999999999999999852 89
Q ss_pred EEEecCccc-----------CCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCc-----------cchhH-H
Q 039491 470 GLLTGDVSL-----------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDI-----------ERGVV-W 526 (1379)
Q Consensus 470 glltGdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~-----------~rG~v-~ 526 (1379)
+.++|+.+. +.+++|+|+||++|.+++.. ..+.++++|||||||++.++ ++... +
T Consensus 95 ~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~ 172 (414)
T 3oiy_A 95 FGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEII 172 (414)
T ss_dssp EECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHH
T ss_pred EEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHH
Confidence 999998875 23489999999999877754 45678999999999987643 22333 6
Q ss_pred HHHHHHcC-----------ccceEEEeccc-CCChH--HH-HHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeecc
Q 039491 527 EEVIIMLP-----------RHINIVLLSAT-VPNTV--EF-ADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCE 591 (1379)
Q Consensus 527 eeii~~Lp-----------~~vqiIlLSAT-vpN~~--ef-a~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d 591 (1379)
..++..+| ...|++++||| .|... .+ ..++.. .+......+..+.+.++...
T Consensus 173 ~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~------- 239 (414)
T 3oiy_A 173 RKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNF------TVGRLVSVARNITHVRISSR------- 239 (414)
T ss_dssp HHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSC------CSSCCCCCCCSEEEEEESSC-------
T ss_pred HHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhcc------CcCccccccccchheeeccC-------
Confidence 67777776 78999999999 55432 22 222220 00000111111222221000
Q ss_pred CcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhH
Q 039491 592 NEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVS 671 (1379)
Q Consensus 592 ~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1379)
...
T Consensus 240 -----------------------------------------------------------------------------~~~ 242 (414)
T 3oiy_A 240 -----------------------------------------------------------------------------SKE 242 (414)
T ss_dssp -----------------------------------------------------------------------------CHH
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 122
Q ss_pred HHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccce
Q 039491 672 IWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGI 751 (1379)
Q Consensus 672 ~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGI 751 (1379)
.+..++ ... ..++||||++++.|+.++..|...++. +
T Consensus 243 ~l~~~l---~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~---------------------------------------~ 279 (414)
T 3oiy_A 243 KLVELL---EIF-RDGILIFAQTEEEGKELYEYLKRFKFN---------------------------------------V 279 (414)
T ss_dssp HHHHHH---HHH-CSSEEEEESSHHHHHHHHHHHHHTTCC---------------------------------------E
T ss_pred HHHHHH---HHc-CCCEEEEECCHHHHHHHHHHHHHcCCc---------------------------------------e
Confidence 233333 332 379999999999999999999875443 4
Q ss_pred E-EecCCCChHHHHHHHHHhcCCCeeEEEe----cccccccCCCCC-ceEEEccccccCCccccc--CCHHHHHHHhccc
Q 039491 752 A-IHHAGLLPIVKEVIEMLFCRGVVKVLFS----TETFAMGVNAPA-RTVVFDNLRKFDGREFRQ--LLPGEYTQMAGRA 823 (1379)
Q Consensus 752 a-vhHggL~~~~Re~Ve~lF~~G~ikVLVA----Tetla~GINiPa-~tvVI~~~~kfDg~~~rp--ls~~eyiQmaGRA 823 (1379)
+ .+||. .|+ +..|++|.++|||| |+++++|+|+|+ +++||+ ||. | .++..|+||+|||
T Consensus 280 ~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~----~~~----p~~~~~~~y~qr~GR~ 345 (414)
T 3oiy_A 280 GETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF----WGT----PSGPDVYTYIQASGRS 345 (414)
T ss_dssp EESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEE----ESC----CTTTCHHHHHHHHGGG
T ss_pred ehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEE----ECC----CCCCCHHHHHHHhCcc
Confidence 4 58884 444 99999999999999 999999999999 999999 998 8 8999999999999
Q ss_pred CCCCCC--CcEEEEEEe
Q 039491 824 GRRGLD--KIGTVVVLC 838 (1379)
Q Consensus 824 GRrG~d--~~G~vIil~ 838 (1379)
||.|.+ ..|.+|+++
T Consensus 346 gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 346 SRILNGVLVKGVSVIFE 362 (414)
T ss_dssp CCEETTEECCEEEEEEC
T ss_pred ccCCCCCCcceEEEEEE
Confidence 999865 479999999
No 26
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.7e-39 Score=395.40 Aligned_cols=328 Identities=20% Similarity=0.255 Sum_probs=223.7
Q ss_pred CCCC-CCHHHHHHHHHHHCC--CcEEEEcCCCccHHHHHHHHHHHHHhc---CCcEEEecchHHHHHHHHHHHhccc---
Q 039491 397 FPFE-LDNFQKEAIYYLENG--DSVFVAAHTSAGKTVVAEYAFALATKH---CTRAVYTAPIKTISNQKYRDFSGKF--- 467 (1379)
Q Consensus 397 ~pFe-L~~~Q~eAI~~L~~g--~sVlV~ApTGSGKTlvae~aI~~~l~~---~~raIylsPtkaLsnQk~~~~~~~f--- 467 (1379)
.+|. |+++|++|++.+.++ ++++++||||||||++|.++++..+.. +.++||++|+++|++|+++.|++.+
T Consensus 137 ~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~ 216 (508)
T 3fho_A 137 XXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYT 216 (508)
T ss_dssp --CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTS
T ss_pred ccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCcc
Confidence 5666 999999999999988 999999999999999999999988744 4589999999999999999999876
Q ss_pred --cEEEEecCcc---cCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCC-ccchhHHHHHHHHcCccceEEE
Q 039491 468 --DVGLLTGDVS---LRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVND-IERGVVWEEVIIMLPRHINIVL 541 (1379)
Q Consensus 468 --~VglltGdv~---in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d-~~rG~v~eeii~~Lp~~vqiIl 541 (1379)
.+....++.. ...+++|+|+||+.|.+++.+....+.++++|||||||++.+ ..+...+..+...++..+|+|+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~ 296 (508)
T 3fho_A 217 EVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVL 296 (508)
T ss_dssp SCCEEC----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEE
T ss_pred CeeEEEEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEE
Confidence 2333333332 223679999999999999988777789999999999999887 5677788888888999999999
Q ss_pred ecccCCChH-HHHHHHhhhcCCcEEEEccCC--CCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCC
Q 039491 542 LSATVPNTV-EFADWIGRTKQKKIRVTGTTK--RPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGA 618 (1379)
Q Consensus 542 LSATvpN~~-efa~wl~~~~~~~i~vi~t~~--RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~ 618 (1379)
||||+++.. .+..++. ..+..+..... .+..+.+.+. ..
T Consensus 297 lSAT~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~-------~~---------------------------- 338 (508)
T 3fho_A 297 FSATFSERVEKYAERFA---PNANEIRLKTEELSVEGIKQLYM-------DC---------------------------- 338 (508)
T ss_dssp EESCCSTHHHHHHHHHS---TTCEEECCCCCC----CCCCEEE-------EC----------------------------
T ss_pred EeCCCCHHHHHHHHHhc---CCCeEEEeccccCCcccceEEEE-------EC----------------------------
Confidence 999998854 4454443 22222211100 0000000000 00
Q ss_pred CCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHH
Q 039491 619 TGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHC 698 (1379)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~c 698 (1379)
.........+...+......++||||++++.|
T Consensus 339 ------------------------------------------------~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a 370 (508)
T 3fho_A 339 ------------------------------------------------QSEEHKYNVLVELYGLLTIGQSIIFCKKKDTA 370 (508)
T ss_dssp --------------------------------------------------CHHHHHHHHHHHC---CCCEEEBCSSTTTT
T ss_pred ------------------------------------------------CchHHHHHHHHHHHHhcCCCcEEEEECCHHHH
Confidence 00122334455555555668999999999999
Q ss_pred HHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEE
Q 039491 699 DKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVL 778 (1379)
Q Consensus 699 e~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVL 778 (1379)
+.++..|.+.+. ++.+|||+|++.+|+.+++.|++|.++||
T Consensus 371 ~~l~~~L~~~~~---------------------------------------~v~~~hg~~~~~~R~~il~~f~~g~~~VL 411 (508)
T 3fho_A 371 EEIARRMTADGH---------------------------------------TVACLTGNLEGAQRDAIMDSFRVGTSKVL 411 (508)
T ss_dssp THHHHHHTTTTC---------------------------------------CCCEEC-----CTTGGGTHHHHSSSCCCC
T ss_pred HHHHHHHHhCCC---------------------------------------cEEEEeCCCCHHHHHHHHHHHHCCCCeEE
Confidence 999999876432 36689999999999999999999999999
Q ss_pred EecccccccCCCCCceEEEccccccCCccccc--CCHHHHHHHhcccCCCCCCCcEEEEEEecCCC--CCHHHHHHHHhc
Q 039491 779 FSTETFAMGVNAPARTVVFDNLRKFDGREFRQ--LLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEI--PGESDLKHIIVG 854 (1379)
Q Consensus 779 VATetla~GINiPa~tvVI~~~~kfDg~~~rp--ls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~--~~~~~l~~li~g 854 (1379)
|||+++++|+|+|++++||+ ||...++. .++.+|+||+|||||.|.+ |.+++++.+.. .....+.+++..
T Consensus 412 VaT~~l~~GiDip~v~~VI~----~~~p~~~~~~~s~~~~~Qr~GRagR~g~~--g~~i~l~~~~~~~~~~~~i~~~~~~ 485 (508)
T 3fho_A 412 VTTNVIARGIDVSQVNLVVN----YDMPLDQAGRPDPQTYLHRIGRTGRFGRV--GVSINFVHDKKSWEEMNAIQEYFQR 485 (508)
T ss_dssp EECC-----CCCTTCCEEEC--------CC-----CTHHHHHTTSCCC-------CEEEEEECTTTSSSSHHHHHHHSCC
T ss_pred EeCChhhcCCCccCCCEEEE----ECCCCcccCCCCHHHHHHHhhhcCCCCCC--cEEEEEEeChHHHHHHHHHHHHHCC
Confidence 99999999999999999998 77721111 7899999999999999965 88888886532 123444444443
Q ss_pred C
Q 039491 855 S 855 (1379)
Q Consensus 855 ~ 855 (1379)
.
T Consensus 486 ~ 486 (508)
T 3fho_A 486 P 486 (508)
T ss_dssp C
T ss_pred C
Confidence 3
No 27
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3.8e-37 Score=380.90 Aligned_cols=393 Identities=15% Similarity=0.117 Sum_probs=196.1
Q ss_pred CCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc-----CCcEEEecchHHHHHHHHHHHhccc----
Q 039491 397 FPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH-----CTRAVYTAPIKTISNQKYRDFSGKF---- 467 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~-----~~raIylsPtkaLsnQk~~~~~~~f---- 467 (1379)
.+|+|+|+|.+|++.+.+|++++++||||+|||++|.+++...+.. +.++||++|+++|+.|+++.|++.+
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 4678999999999999999999999999999999999999888865 7899999999999999999999874
Q ss_pred -cEEEEecCcccCC-------CCceeeecHHHHHHHHhcCcc-cCCCccEEEEeccCCCCCccchhHHHHHHHH-----c
Q 039491 468 -DVGLLTGDVSLRP-------EASCLIMTTEILRSMLYRGAD-IIRDIEWVIFDEVHYVNDIERGVVWEEVIIM-----L 533 (1379)
Q Consensus 468 -~VglltGdv~in~-------~a~IlV~TpEiL~smL~~~~~-~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~-----L 533 (1379)
.++.++|+..... .++|+|+||++|.+++.++.. .+.++++|||||||++.+... +..++.. +
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~---~~~~~~~~~~~~~ 160 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP---YNVLMTRYLEQKF 160 (556)
T ss_dssp CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH---HHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch---HHHHHHHHHHhhh
Confidence 7899999886543 478999999999999988766 789999999999999987643 3333211 1
Q ss_pred ---CccceEEEecccCC--ChHHHHHHHhhh------cC-CcEEEEccC------CCCcCceEEEeecCceeeeccCccc
Q 039491 534 ---PRHINIVLLSATVP--NTVEFADWIGRT------KQ-KKIRVTGTT------KRPVPLEHCLYYSGEFYKVCENEAF 595 (1379)
Q Consensus 534 ---p~~vqiIlLSATvp--N~~efa~wl~~~------~~-~~i~vi~t~------~RpvpLe~~l~~~~~l~~i~d~~~f 595 (1379)
++..++++||||++ |..++.+|+... .. ..+...... +.+.|...+...... ....+
T Consensus 161 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 235 (556)
T 4a2p_A 161 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR-----IHNPF 235 (556)
T ss_dssp CC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCC-----SCCHH
T ss_pred cccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCC-----cCChH
Confidence 35689999999984 444556665421 11 111111100 001122222111100 00000
Q ss_pred chhhHHHHHHHHHhhccccccCCC-CCCCCCCCCccc---------ccccccCCC-------------------------
Q 039491 596 IPQGWKAAKDAYKRKNLSAASGAT-GSYAGASSPRDG---------ARAQKREHP------------------------- 640 (1379)
Q Consensus 596 ~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~------------------------- 640 (1379)
. ......+..+............ ........+... +........
T Consensus 236 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (556)
T 4a2p_A 236 A-AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDA 314 (556)
T ss_dssp H-HHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 0 0011111111110000000000 000000000000 000000000
Q ss_pred -----CCCC-CC-Cccccc--c-ccCCCCCC-----------------CcccccchhHHHHHHHHHHHh----CCCCCEE
Q 039491 641 -----NRGK-QN-KHSVVG--I-KNSGGSQN-----------------NWGLRRSEVSIWLTLINKLSK----KSLLPVV 689 (1379)
Q Consensus 641 -----~~gr-~~-~~~~~~--~-~~~~~~~~-----------------~~~~~~~~~~~~~~Li~~L~~----~~~~pvI 689 (1379)
..+. .. ...+.. . ...+.... ..........++..+++.+.. ....++|
T Consensus 315 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~l 394 (556)
T 4a2p_A 315 LIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTL 394 (556)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEE
Confidence 0000 00 000000 0 00000000 000000012344445555433 5668999
Q ss_pred EEeCChhHHHHHHHHhhcC----CCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHH
Q 039491 690 IFCFSKNHCDKLADGMSGI----DLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEV 765 (1379)
Q Consensus 690 VFv~Srk~ce~lA~~L~~~----~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~ 765 (1379)
|||+++..|+.++..|... ++... .+...+...+||+|++.+|..
T Consensus 395 VF~~~~~~~~~l~~~L~~~~~~~~~~~~-------------------------------~~~g~~~~~~~~~~~~~~R~~ 443 (556)
T 4a2p_A 395 LFAKTRALVSALKKCMEENPILNYIKPG-------------------------------VLMGRGRRDQTTGMTLPSQKG 443 (556)
T ss_dssp EEESSHHHHHHHHHHHTTCSGGGSCCEE-------------------------------C--------------------
T ss_pred EEEccHHHHHHHHHHHHhCCCcceeeee-------------------------------EEEccCCcccccccCHHHHHH
Confidence 9999999999999999764 11111 122345567899999999999
Q ss_pred HHHHhcC-CCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCC
Q 039491 766 IEMLFCR-GVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 766 Ve~lF~~-G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~ 841 (1379)
++..|++ |.++|||||+++++|||+|++++||+ ||. |.++..|+||+|| ||.+ .|.||+++...
T Consensus 444 ~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d~----p~s~~~~~Qr~GR-gR~~---~g~~~~l~~~~ 508 (556)
T 4a2p_A 444 VLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL----YEY----SGNVTKMIQVRGR-GRAA---GSKCILVTSKT 508 (556)
T ss_dssp ----------CCEEEEEC-----------CEEEE----ETC----CSCHHHHHHC------------CCEEEEESCH
T ss_pred HHHHhcccCceEEEEEcCchhcCCCchhCCEEEE----eCC----CCCHHHHHHhcCC-CCCC---CceEEEEEeCc
Confidence 9999999 99999999999999999999999999 999 9999999999999 9883 38999998654
No 28
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.8e-36 Score=374.11 Aligned_cols=380 Identities=18% Similarity=0.149 Sum_probs=218.4
Q ss_pred CCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc-----CCcEEEecchHHHHHHHHHHHhccc-----
Q 039491 398 PFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH-----CTRAVYTAPIKTISNQKYRDFSGKF----- 467 (1379)
Q Consensus 398 pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~-----~~raIylsPtkaLsnQk~~~~~~~f----- 467 (1379)
||+|+++|.+|++.+.+|++++++||||+|||++|.+++...+.. +.++||++|+++|++|+++.|++.+
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 689999999999999999999999999999999999999888855 7899999999999999999999875
Q ss_pred cEEEEecCcccCCC-------CceeeecHHHHHHHHhcCcc-cCCCccEEEEeccCCCCCccchhHHHHHHHHc------
Q 039491 468 DVGLLTGDVSLRPE-------ASCLIMTTEILRSMLYRGAD-IIRDIEWVIFDEVHYVNDIERGVVWEEVIIML------ 533 (1379)
Q Consensus 468 ~VglltGdv~in~~-------a~IlV~TpEiL~smL~~~~~-~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L------ 533 (1379)
.++.++|+...... ++|+|+||++|.+++..+.. .+.++++|||||||++.+.. . +..++..+
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~--~-~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNH--P-YNQIMFRYLDHKLG 158 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTC--H-HHHHHHHHHHHHTS
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcc--h-HHHHHHHHHHhhhc
Confidence 79999999876543 79999999999999988765 68899999999999998753 2 33333211
Q ss_pred ---CccceEEEecccCCCh---------HHHHHHHhhhcCCcEEEEcc------CCCCcCceEEEeecCceee-------
Q 039491 534 ---PRHINIVLLSATVPNT---------VEFADWIGRTKQKKIRVTGT------TKRPVPLEHCLYYSGEFYK------- 588 (1379)
Q Consensus 534 ---p~~vqiIlLSATvpN~---------~efa~wl~~~~~~~i~vi~t------~~RpvpLe~~l~~~~~l~~------- 588 (1379)
.+..++++||||+++. ..+...........+..... .+...|...+.........
T Consensus 159 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIIS 238 (555)
T ss_dssp SCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHH
T ss_pred cccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHH
Confidence 2457999999998653 11222222111111221111 1112222222211100000
Q ss_pred -------------------ec--cCcccchhhHHHHHHH-----------------------------------------
Q 039491 589 -------------------VC--ENEAFIPQGWKAAKDA----------------------------------------- 606 (1379)
Q Consensus 589 -------------------i~--d~~~f~~~~~~~~~~~----------------------------------------- 606 (1379)
+. ....+....+......
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (555)
T 3tbk_A 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISE 318 (555)
T ss_dssp HHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 00 0000000000000000
Q ss_pred ----------HHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHH
Q 039491 607 ----------YKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTL 676 (1379)
Q Consensus 607 ----------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 676 (1379)
+..-.. .... .......+.... .. ........... ........++..+
T Consensus 319 ~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~-~~--------~~~~~~~~~~~-------~~~~~~~~k~~~l 376 (555)
T 3tbk_A 319 DAQMTDALNYLKAFFH-DVRE-----AAFDETERELTR-RF--------EEKLEELEKVS-------RDPSNENPKLRDL 376 (555)
T ss_dssp HSCHHHHHHHHHHHHH-HHCC----------HHHHHHH-HH--------HTTHHHHHHHH-------HCGGGCCHHHHHH
T ss_pred hhhHHHHHHHHHHHHH-HHhh-----cccchHHHHHHH-HH--------hhhhhhhhhhc-------cCCCcCCHHHHHH
Confidence 000000 0000 000000000000 00 00000000000 0000012233344
Q ss_pred HHHHH----hCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceE
Q 039491 677 INKLS----KKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIA 752 (1379)
Q Consensus 677 i~~L~----~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIa 752 (1379)
++.+. .....++||||+++..|+.++..|...+....- . ...+...|..
T Consensus 377 ~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~----------------~-----------~~~~~g~~~~ 429 (555)
T 3tbk_A 377 YLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFL----------------K-----------PGILTGRGRT 429 (555)
T ss_dssp HHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTC----------------C-----------EEECCC----
T ss_pred HHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCce----------------e-----------eeEEEecCCc
Confidence 44333 345689999999999999999999875421100 0 0011233566
Q ss_pred EecCCCChHHHHHHHHHhcC-CCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCc
Q 039491 753 IHHAGLLPIVKEVIEMLFCR-GVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKI 831 (1379)
Q Consensus 753 vhHggL~~~~Re~Ve~lF~~-G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~ 831 (1379)
.+||+|++.+|..++..|++ |.++|||||+++++|||+|++++||+ ||. |.++..|+||+|| ||. . .
T Consensus 430 ~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~----~d~----p~s~~~~~Qr~GR-gR~-~--~ 497 (555)
T 3tbk_A 430 NRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVIL----YEY----VGNVIKMIQTRGR-GRA-R--D 497 (555)
T ss_dssp ----------------------CCSEEEECCCTTCCEETTSCSEEEE----ESC----CSSCCCEECSSCC-CTT-T--S
T ss_pred ccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEE----eCC----CCCHHHHHHhcCc-CcC-C--C
Confidence 78999999999999999999 99999999999999999999999999 999 9999999999999 887 3 4
Q ss_pred EEEEEEecCC
Q 039491 832 GTVVVLCRDE 841 (1379)
Q Consensus 832 G~vIil~~~~ 841 (1379)
|.+++++.+.
T Consensus 498 g~~~~l~~~~ 507 (555)
T 3tbk_A 498 SKCFLLTSSA 507 (555)
T ss_dssp CEEEEEESCH
T ss_pred ceEEEEEcCC
Confidence 9999998754
No 29
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.9e-35 Score=356.14 Aligned_cols=392 Identities=16% Similarity=0.148 Sum_probs=243.4
Q ss_pred CCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh-cCCcEEEecchHHHHHHHHHHHhccc-----cEEE
Q 039491 398 PFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK-HCTRAVYTAPIKTISNQKYRDFSGKF-----DVGL 471 (1379)
Q Consensus 398 pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~-~~~raIylsPtkaLsnQk~~~~~~~f-----~Vgl 471 (1379)
+|+|+++|++++..+.++ ++++++|||+|||+++..++...+. .+.++||++|+++|++|+++++++.+ +++.
T Consensus 7 ~~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CCCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEE
Confidence 367999999999999988 9999999999999999988877764 67899999999999999999999886 7899
Q ss_pred EecCcccC------CCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEeccc
Q 039491 472 LTGDVSLR------PEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSAT 545 (1379)
Q Consensus 472 ltGdv~in------~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSAT 545 (1379)
++|+.... ...+|+|+||+.|.+.+.++...+.++++|||||||++.+......+...+....+..++++||||
T Consensus 86 ~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaT 165 (494)
T 1wp9_A 86 LTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTAS 165 (494)
T ss_dssp ECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESC
T ss_pred eeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecC
Confidence 99987643 257899999999999988877778999999999999998654444444444555677899999999
Q ss_pred CCCh-HHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeecc-Ccccc--hhhHHHHH----HHHHhhccccccC
Q 039491 546 VPNT-VEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCE-NEAFI--PQGWKAAK----DAYKRKNLSAASG 617 (1379)
Q Consensus 546 vpN~-~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d-~~~f~--~~~~~~~~----~~l~~~~~~~~~~ 617 (1379)
+.+. .++.+++.......+..... ..+. +..++......+.... ...+. ...+...+ ..+..........
T Consensus 166 p~~~~~~~~~l~~~l~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (494)
T 1wp9_A 166 PGSTPEKIMEVINNLGIEHIEYRSE-NSPD-VRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSS 243 (494)
T ss_dssp SCSSHHHHHHHHHHTTCCEEEECCT-TSTT-TGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCC
T ss_pred CCCCcHHHHHHHHhcChheeeccCC-CcHH-HHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 8754 45555555443333333222 1111 0000000000000000 00000 00000000 0000000000000
Q ss_pred CCCC--------------CCCCCCCccccccc-----cc-----CCCCCCCCC--Ccccc--ccccCCCCCC-C----cc
Q 039491 618 ATGS--------------YAGASSPRDGARAQ-----KR-----EHPNRGKQN--KHSVV--GIKNSGGSQN-N----WG 664 (1379)
Q Consensus 618 ~~~~--------------~~~~~~~~~~~~~~-----~~-----~~~~~gr~~--~~~~~--~~~~~~~~~~-~----~~ 664 (1379)
.... ...........-.. .. .....+... ..... .....+.... . ..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (494)
T 1wp9_A 244 PDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDK 323 (494)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSH
T ss_pred CCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhH
Confidence 0000 00000000000000 00 000000000 00000 0000000000 0 00
Q ss_pred -------------cccchhHHHHHHHHHHHh----CCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHh
Q 039491 665 -------------LRRSEVSIWLTLINKLSK----KSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAF 727 (1379)
Q Consensus 665 -------------~~~~~~~~~~~Li~~L~~----~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~ 727 (1379)
.......++..+++.+.. ....++||||+++..|+.++..|...++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~---------------- 387 (494)
T 1wp9_A 324 RMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIK---------------- 387 (494)
T ss_dssp HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCC----------------
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCC----------------
Confidence 000012234444444444 56789999999999999999999875433
Q ss_pred hhccCCCCCchhHHHHHHhhccceEEecC--------CCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEcc
Q 039491 728 SRLKGSDRNLPQIVRVQSLLRRGIAIHHA--------GLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDN 799 (1379)
Q Consensus 728 ~~L~~edr~lpqi~~l~~lL~rGIavhHg--------gL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~ 799 (1379)
+..+|| +|++.+|+.++..|++|.++|||||+++++|||+|++++||.
T Consensus 388 -----------------------~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~- 443 (494)
T 1wp9_A 388 -----------------------AKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVF- 443 (494)
T ss_dssp -----------------------EEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEE-
T ss_pred -----------------------cEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEE-
Confidence 456777 999999999999999999999999999999999999999999
Q ss_pred ccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCC
Q 039491 800 LRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEI 842 (1379)
Q Consensus 800 ~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~ 842 (1379)
||. +.++..|+||+|||||.|. |.+++++..+.
T Consensus 444 ---~d~----~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t 476 (494)
T 1wp9_A 444 ---YEP----VPSAIRSIQRRGRTGRHMP---GRVIILMAKGT 476 (494)
T ss_dssp ---SSC----CHHHHHHHHHHTTSCSCCC---SEEEEEEETTS
T ss_pred ---eCC----CCCHHHHHHHHhhccCCCC---ceEEEEEecCC
Confidence 998 8999999999999999996 89999887764
No 30
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=6.8e-36 Score=381.32 Aligned_cols=402 Identities=18% Similarity=0.160 Sum_probs=202.6
Q ss_pred cCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcC-----CcEEEecchHHHHHHHHHHHhccc--
Q 039491 396 DFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHC-----TRAVYTAPIKTISNQKYRDFSGKF-- 467 (1379)
Q Consensus 396 ~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~-----~raIylsPtkaLsnQk~~~~~~~f-- 467 (1379)
.++|. |+++|.++++.+..|++++++||||+|||++|.+++...+..+ .++||++|+++|+.|+++.+++.+
T Consensus 8 ~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 8 LYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp TTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred ccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 46766 9999999999999999999999999999999999998877543 789999999999999999998875
Q ss_pred ---cEEEEecCcccC-------CCCceeeecHHHHHHHHhcCcc-cCCCccEEEEeccCCCCCccchhHH-HHHHHH---
Q 039491 468 ---DVGLLTGDVSLR-------PEASCLIMTTEILRSMLYRGAD-IIRDIEWVIFDEVHYVNDIERGVVW-EEVIIM--- 532 (1379)
Q Consensus 468 ---~VglltGdv~in-------~~a~IlV~TpEiL~smL~~~~~-~l~~v~lVI~DEaH~l~d~~rG~v~-eeii~~--- 532 (1379)
+++.++|+.... ..++|+|+||++|.+++.++.. .+.++++|||||||++.+......+ ...+..
T Consensus 88 ~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~ 167 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLG 167 (696)
T ss_dssp TTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHT
T ss_pred CCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHHhhc
Confidence 789999988654 3579999999999999988765 6889999999999999865321111 111221
Q ss_pred --cCccceEEEecccCCCh-----HHHHHHHhhh-cCCcEEEEccCCCCc-CceEEEeecCceeeecc-Ccc-cchhhHH
Q 039491 533 --LPRHINIVLLSATVPNT-----VEFADWIGRT-KQKKIRVTGTTKRPV-PLEHCLYYSGEFYKVCE-NEA-FIPQGWK 601 (1379)
Q Consensus 533 --Lp~~vqiIlLSATvpN~-----~efa~wl~~~-~~~~i~vi~t~~Rpv-pLe~~l~~~~~l~~i~d-~~~-f~~~~~~ 601 (1379)
.++..++|+||||+.+. .+..+++... ..-...++.+..... .+..+++.....+.... ... .....+.
T Consensus 168 ~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~ 247 (696)
T 2ykg_A 168 GSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIA 247 (696)
T ss_dssp TCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHH
Confidence 14678999999998731 1111222111 001111222211111 01111111101111111 000 0000000
Q ss_pred ---HHHHHHHhhccccccCCCCCCCCCCCCccc---------ccccccCCCC----------------------------
Q 039491 602 ---AAKDAYKRKNLSAASGATGSYAGASSPRDG---------ARAQKREHPN---------------------------- 641 (1379)
Q Consensus 602 ---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~---------------------------- 641 (1379)
.....+......+..... ........... ..........
T Consensus 248 ~l~~~i~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~ 326 (696)
T 2ykg_A 248 QLMRDTESLAKRICKDLENLS-QIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIIS 326 (696)
T ss_dssp HHHHHHHHHHHHHSTTGGGSS-SCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh-ccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhcc
Confidence 011111110000000000 00000000000 0000000000
Q ss_pred -CCCCCCc---ccc--ccccCCCCCCCc------------------ccccchhHHHHHHHHHHHhC----CCCCEEEEeC
Q 039491 642 -RGKQNKH---SVV--GIKNSGGSQNNW------------------GLRRSEVSIWLTLINKLSKK----SLLPVVIFCF 693 (1379)
Q Consensus 642 -~gr~~~~---~~~--~~~~~~~~~~~~------------------~~~~~~~~~~~~Li~~L~~~----~~~pvIVFv~ 693 (1379)
..+.... ... ............ ........++..++..+... ...++||||+
T Consensus 327 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~ 406 (696)
T 2ykg_A 327 EHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVK 406 (696)
T ss_dssp HHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECS
T ss_pred chhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeC
Confidence 0000000 000 000000000000 00000123344455544432 5679999999
Q ss_pred ChhHHHHHHHHhhcCC----CCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHH
Q 039491 694 SKNHCDKLADGMSGID----LTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEML 769 (1379)
Q Consensus 694 Srk~ce~lA~~L~~~~----l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~l 769 (1379)
+++.|+.++..|...+ +... .+..+|...+||+|++.+|+.++..
T Consensus 407 ~~~~~~~l~~~L~~~~~~~~~~~~-------------------------------~l~G~~~~~~h~~~~~~eR~~v~~~ 455 (696)
T 2ykg_A 407 TRALVDALKNWIEGNPKLSFLKPG-------------------------------ILTGRGKTNQNTGMTLPAQKCILDA 455 (696)
T ss_dssp CHHHHHHHHHHHHHCTTCCSCCEE-------------------------------C------------------------
T ss_pred cHHHHHHHHHHHHhCCCcccccee-------------------------------EEEccCCCccccCCCHHHHHHHHHH
Confidence 9999999999998765 2221 1223445566999999999999999
Q ss_pred hcC-CCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCC
Q 039491 770 FCR-GVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 770 F~~-G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~ 841 (1379)
|++ |.++|||||+++++|||+|++++||+ ||. |.++..|+||+|| ||.. .|.+++++...
T Consensus 456 F~~~g~~~vLVaT~v~~~GiDip~v~~VI~----~d~----p~s~~~~~Qr~GR-GR~~---~g~~~~l~~~~ 516 (696)
T 2ykg_A 456 FKASGDHNILIATSVADEGIDIAQCNLVIL----YEY----VGNVIKMIQTRGR-GRAR---GSKCFLLTSNA 516 (696)
T ss_dssp -----CCSCSEEEESSCCC---CCCSEEEE----ESC----C--CCCC----------C---CCEEEEEESCH
T ss_pred HHhcCCccEEEEechhhcCCcCccCCEEEE----eCC----CCCHHHHHHhhcc-CcCC---CceEEEEecCC
Confidence 998 99999999999999999999999999 999 8999999999999 9973 38999888653
No 31
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.4e-35 Score=393.02 Aligned_cols=301 Identities=17% Similarity=0.185 Sum_probs=229.3
Q ss_pred ccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc----cEE
Q 039491 395 LDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF----DVG 470 (1379)
Q Consensus 395 ~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f----~Vg 470 (1379)
..++|+|+++|++|++.+.+|++++++||||||||++|+.++...+.++.++||++||++|++|+++.|++.. +++
T Consensus 73 ~~~gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~ 152 (1104)
T 4ddu_A 73 KKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIF 152 (1104)
T ss_dssp HHSSSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEE
T ss_pred HhcCCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEE
Confidence 4589999999999999999999999999999999999999988888899999999999999999999999943 899
Q ss_pred EEecCccc-----------CCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCc-----------cchhH-HH
Q 039491 471 LLTGDVSL-----------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDI-----------ERGVV-WE 527 (1379)
Q Consensus 471 lltGdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~-----------~rG~v-~e 527 (1379)
.++|+.+. +.+++|+|+||++|.+++.. ..+.++++|||||||++.+. ++... +.
T Consensus 153 ~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~ 230 (1104)
T 4ddu_A 153 GFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIR 230 (1104)
T ss_dssp EECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHH
Confidence 99999875 23489999999999877654 45678999999999988763 33333 67
Q ss_pred HHHHHcC-----------ccceEEEeccc-CCChHH---HHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccC
Q 039491 528 EVIIMLP-----------RHINIVLLSAT-VPNTVE---FADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCEN 592 (1379)
Q Consensus 528 eii~~Lp-----------~~vqiIlLSAT-vpN~~e---fa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~ 592 (1379)
.++..+| ...|+++|||| .|.... +..++. +.+......+..+.+.++...
T Consensus 231 ~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~------i~v~~~~~~~~~i~~~~~~~~-------- 296 (1104)
T 4ddu_A 231 KAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN------FTVGRLVSVARNITHVRISSR-------- 296 (1104)
T ss_dssp HHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC------CCCCBCCCCCCCEEEEEESCC--------
T ss_pred HHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee------EEeccCCCCcCCceeEEEecC--------
Confidence 7788887 88999999999 554421 222221 111111111112222221100
Q ss_pred cccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHH
Q 039491 593 EAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSI 672 (1379)
Q Consensus 593 ~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1379)
....
T Consensus 297 ----------------------------------------------------------------------------k~~~ 300 (1104)
T 4ddu_A 297 ----------------------------------------------------------------------------SKEK 300 (1104)
T ss_dssp ----------------------------------------------------------------------------CHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 1122
Q ss_pred HHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceE
Q 039491 673 WLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIA 752 (1379)
Q Consensus 673 ~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIa 752 (1379)
+..++ ... ..++||||++++.|+.++..|...++. +.
T Consensus 301 L~~ll---~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~---------------------------------------~~ 337 (1104)
T 4ddu_A 301 LVELL---EIF-RDGILIFAQTEEEGKELYEYLKRFKFN---------------------------------------VG 337 (1104)
T ss_dssp HHHHH---HHH-CSSEEEEESSSHHHHHHHHHHHHTTCC---------------------------------------EE
T ss_pred HHHHH---Hhc-CCCEEEEECcHHHHHHHHHHHHhCCCC---------------------------------------ee
Confidence 23333 332 379999999999999999999875543 44
Q ss_pred -EecCCCChHHHHHHHHHhcCCCeeEEEe----cccccccCCCCC-ceEEEccccccCCccccc----------------
Q 039491 753 -IHHAGLLPIVKEVIEMLFCRGVVKVLFS----TETFAMGVNAPA-RTVVFDNLRKFDGREFRQ---------------- 810 (1379)
Q Consensus 753 -vhHggL~~~~Re~Ve~lF~~G~ikVLVA----Tetla~GINiPa-~tvVI~~~~kfDg~~~rp---------------- 810 (1379)
.+|| .|+. +..|++|.++|||| |+++++|||+|+ +++||+ ||.+.++-
T Consensus 338 ~~lhg-----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~----~d~P~~~~Sle~~~~~~~~~~~l~ 407 (1104)
T 4ddu_A 338 ETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF----WGTPSMRFSLELDKAPRFVLARVL 407 (1104)
T ss_dssp ESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEE----ESCCEEEEECSSSSCCHHHHHHHH
T ss_pred eEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEE----ECCCCCCCCcccccCHHHHHHHHH
Confidence 5888 2555 99999999999999 999999999999 999999 88754110
Q ss_pred ----------------------------------------------------CCHHHHHHHhcccCC--CCCCCcEEEEE
Q 039491 811 ----------------------------------------------------LLPGEYTQMAGRAGR--RGLDKIGTVVV 836 (1379)
Q Consensus 811 ----------------------------------------------------ls~~eyiQmaGRAGR--rG~d~~G~vIi 836 (1379)
.++..|+||+||||| +|..+.|.+|+
T Consensus 408 ~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~ 487 (1104)
T 4ddu_A 408 KEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVI 487 (1104)
T ss_dssp HHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEE
Confidence 167799999999999 45456799999
Q ss_pred EecC
Q 039491 837 LCRD 840 (1379)
Q Consensus 837 l~~~ 840 (1379)
++++
T Consensus 488 ~~~d 491 (1104)
T 4ddu_A 488 FEED 491 (1104)
T ss_dssp ECCC
T ss_pred EEec
Confidence 9854
No 32
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=4.2e-35 Score=374.23 Aligned_cols=389 Identities=14% Similarity=0.136 Sum_probs=222.4
Q ss_pred CCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcC------CcEEEecchHHHHHHH-HHHHhccc--
Q 039491 397 FPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHC------TRAVYTAPIKTISNQK-YRDFSGKF-- 467 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~------~raIylsPtkaLsnQk-~~~~~~~f-- 467 (1379)
-+|+|+++|.++++.+.+|++++++||||+|||++|.+++...+..+ .++||++|+++|+.|+ ++.|++.+
T Consensus 4 ~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 4 AMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp ---CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 36789999999999999999999999999999999999998877433 8899999999999999 99998876
Q ss_pred --cEEEEecCcccC-------CCCceeeecHHHHHHHHh------cCcccCCCccEEEEeccCCCCCcc-chhHHHHHHH
Q 039491 468 --DVGLLTGDVSLR-------PEASCLIMTTEILRSMLY------RGADIIRDIEWVIFDEVHYVNDIE-RGVVWEEVII 531 (1379)
Q Consensus 468 --~VglltGdv~in-------~~a~IlV~TpEiL~smL~------~~~~~l~~v~lVI~DEaH~l~d~~-rG~v~eeii~ 531 (1379)
.++.++|+...+ ...+|+|+||++|.+++. .+...+.++++|||||||++.... +.......+.
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~ 163 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 163 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHH
Confidence 799999998765 358999999999999883 444567899999999999986432 2222222222
Q ss_pred Hc-------------CccceEEEecccCCCh---------HHHHHHHhhhcCCcEEEEccC------CCCcCceEEEeec
Q 039491 532 ML-------------PRHINIVLLSATVPNT---------VEFADWIGRTKQKKIRVTGTT------KRPVPLEHCLYYS 583 (1379)
Q Consensus 532 ~L-------------p~~vqiIlLSATvpN~---------~efa~wl~~~~~~~i~vi~t~------~RpvpLe~~l~~~ 583 (1379)
.. .+..++|+||||+.+. ..+.++........+...... ..+.|...+.+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~ 243 (699)
T 4gl2_A 164 QKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIAD 243 (699)
T ss_dssp HHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC
T ss_pred hhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcc
Confidence 11 1457999999998862 233333332222111111110 0122222332221
Q ss_pred CceeeeccCcccchhhHHHHHHHHHhhccccccCCCCC---------------CCCCCCCc-------------------
Q 039491 584 GEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGS---------------YAGASSPR------------------- 629 (1379)
Q Consensus 584 ~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~---------------~~~~~~~~------------------- 629 (1379)
.... ..| ..........+.......+....+. ........
T Consensus 244 ~~~~-----~~~-~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 317 (699)
T 4gl2_A 244 ATRE-----DPF-KEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTI 317 (699)
T ss_dssp ----------CH-HHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHS
T ss_pred cccC-----ChH-HHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 1000 000 0000000000000000000000000 00000000
Q ss_pred -------------ccccccccCCCCCC-CCCCcc-c------c--------ccccCCCCCCCcccccchhHHHHHH-HHH
Q 039491 630 -------------DGARAQKREHPNRG-KQNKHS-V------V--------GIKNSGGSQNNWGLRRSEVSIWLTL-INK 679 (1379)
Q Consensus 630 -------------~~~~~~~~~~~~~g-r~~~~~-~------~--------~~~~~~~~~~~~~~~~~~~~~~~~L-i~~ 679 (1379)
.............+ +..... . . ......... ........+..+ ...
T Consensus 318 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~----~~~~k~~~L~~~L~~~ 393 (699)
T 4gl2_A 318 RMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPE----YENEKLTKLRNTIMEQ 393 (699)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC--------CSSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCC----CCCHHHHHHHHHHHHH
Confidence 00000000000000 000000 0 0 000000000 000001112222 233
Q ss_pred HHhCC-CCCEEEEeCChhHHHHHHHHhhcCC-CCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCC
Q 039491 680 LSKKS-LLPVVIFCFSKNHCDKLADGMSGID-LTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAG 757 (1379)
Q Consensus 680 L~~~~-~~pvIVFv~Srk~ce~lA~~L~~~~-l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHgg 757 (1379)
+...+ ..++||||.+++.|+.++..|.... +.. ....+..+||+
T Consensus 394 ~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~----------------------------------~g~~~~~lhg~ 439 (699)
T 4gl2_A 394 YTRTEESARGIIFTKTRQSAYALSQWITENEKFAE----------------------------------VGVKAHHLIGA 439 (699)
T ss_dssp HHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC---------------------------------------CEECCCS
T ss_pred HhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccc----------------------------------cCcceEEEECC
Confidence 44444 6899999999999999999997641 100 01225678988
Q ss_pred --------CChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCC
Q 039491 758 --------LLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLD 829 (1379)
Q Consensus 758 --------L~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d 829 (1379)
|++.+|+.++..|++|.++|||||+++++|||+|++++||+ ||. |.++..|+||+|||||.|
T Consensus 440 ~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~----~d~----p~s~~~~~Qr~GRArr~g-- 509 (699)
T 4gl2_A 440 GHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIR----YGL----VTNEIAMVQARGRARADE-- 509 (699)
T ss_dssp CCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEE----ESC----CCCHHHHHHHHTTSCSSS--
T ss_pred CCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEE----eCC----CCCHHHHHHHcCCCCCCC--
Confidence 99999999999999999999999999999999999999999 999 999999999999987766
Q ss_pred CcEEEEEEecCC
Q 039491 830 KIGTVVVLCRDE 841 (1379)
Q Consensus 830 ~~G~vIil~~~~ 841 (1379)
+.++++...+
T Consensus 510 --~~~~l~~~~~ 519 (699)
T 4gl2_A 510 --STYVLVAHSG 519 (699)
T ss_dssp --CEEEEEEESS
T ss_pred --ceEEEEEeCC
Confidence 4455555443
No 33
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=7.8e-35 Score=377.51 Aligned_cols=393 Identities=15% Similarity=0.125 Sum_probs=199.0
Q ss_pred CCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc-----CCcEEEecchHHHHHHHHHHHhccc-----c
Q 039491 399 FELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH-----CTRAVYTAPIKTISNQKYRDFSGKF-----D 468 (1379)
Q Consensus 399 FeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~-----~~raIylsPtkaLsnQk~~~~~~~f-----~ 468 (1379)
++|+++|.+|++.+.+|++++++||||+|||++|.+++...+.. +.++||++|+++|+.|+++.|++.+ +
T Consensus 247 ~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 326 (797)
T 4a2q_A 247 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326 (797)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCce
Confidence 45999999999999999999999999999999999999988865 7899999999999999999998875 7
Q ss_pred EEEEecCcccCC-------CCceeeecHHHHHHHHhcCcc-cCCCccEEEEeccCCCCCccchhHHHHHHHHc-------
Q 039491 469 VGLLTGDVSLRP-------EASCLIMTTEILRSMLYRGAD-IIRDIEWVIFDEVHYVNDIERGVVWEEVIIML------- 533 (1379)
Q Consensus 469 VglltGdv~in~-------~a~IlV~TpEiL~smL~~~~~-~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L------- 533 (1379)
++.++|+...+. .++|+|+||++|.+++.++.. .+.++++|||||||++.+... +..++..+
T Consensus 327 v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~---~~~i~~~~~~~~~~~ 403 (797)
T 4a2q_A 327 VQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP---YNVLMTRYLEQKFNS 403 (797)
T ss_dssp EEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH---HHHHHHHHHHHHHTT
T ss_pred EEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc---HHHHHHHHHHHhhcc
Confidence 999999986553 579999999999999987765 688999999999999987532 33333221
Q ss_pred -CccceEEEecccCCCh--HHH-------HHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHH
Q 039491 534 -PRHINIVLLSATVPNT--VEF-------ADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAA 603 (1379)
Q Consensus 534 -p~~vqiIlLSATvpN~--~ef-------a~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~ 603 (1379)
.+..++++||||++.. .++ ...........+.... .....+..++......+..++.. ....+...
T Consensus 404 ~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~--~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~ 479 (797)
T 4a2q_A 404 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVR--ENIQELQRFMNKPEIDVRLVKRR--IHNPFAAI 479 (797)
T ss_dssp CCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCC--TTHHHHHHHSCCCCCEEEECCCC--SCCHHHHH
T ss_pred CCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEeccc--ccHHHHHHhcCCCceEEEecCCC--CCcHHHHH
Confidence 4558999999998532 111 1111111111111111 11001111111001111111100 00011111
Q ss_pred H----HHHHhhccccccCCC-CCCCCCCCCcc-----c----ccccccCCCCC---------------------------
Q 039491 604 K----DAYKRKNLSAASGAT-GSYAGASSPRD-----G----ARAQKREHPNR--------------------------- 642 (1379)
Q Consensus 604 ~----~~l~~~~~~~~~~~~-~~~~~~~~~~~-----~----~~~~~~~~~~~--------------------------- 642 (1379)
. ..+......-..... ........+.. . ...........
T Consensus 480 ~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 559 (797)
T 4a2q_A 480 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (797)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1 110000000000000 00000000000 0 00000000000
Q ss_pred ---C-CCC-Cccccc---cccCCCCCC-----------------CcccccchhHHHHHHHHHHHh----CCCCCEEEEeC
Q 039491 643 ---G-KQN-KHSVVG---IKNSGGSQN-----------------NWGLRRSEVSIWLTLINKLSK----KSLLPVVIFCF 693 (1379)
Q Consensus 643 ---g-r~~-~~~~~~---~~~~~~~~~-----------------~~~~~~~~~~~~~~Li~~L~~----~~~~pvIVFv~ 693 (1379)
+ ... ...+.. ....+.... ..........++..|++.|.. ....++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~ 639 (797)
T 4a2q_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (797)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEES
T ss_pred ccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEEC
Confidence 0 000 000000 000000000 000000012234445544443 56689999999
Q ss_pred ChhHHHHHHHHhhcCC----CCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHH
Q 039491 694 SKNHCDKLADGMSGID----LTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEML 769 (1379)
Q Consensus 694 Srk~ce~lA~~L~~~~----l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~l 769 (1379)
+++.|+.++..|.... +... .+...|...+||+|++.+|..++..
T Consensus 640 ~~~~~~~L~~~L~~~~~~~~~~~~-------------------------------~l~G~~~~~~hg~~~~~eR~~~l~~ 688 (797)
T 4a2q_A 640 TRALVSALKKCMEENPILNYIKPG-------------------------------VLMGRGRRDQTTGMTLPSQKGVLDA 688 (797)
T ss_dssp SHHHHHHHHHHHHTCSTTCSCCCE-------------------------------EC-----------------------
T ss_pred cHHHHHHHHHHHHhCcccccccce-------------------------------EEEecCCcccCCCCCHHHHHHHHHH
Confidence 9999999999997631 1111 1223455678999999999999999
Q ss_pred hcC-CCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCC
Q 039491 770 FCR-GVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 770 F~~-G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~ 841 (1379)
|++ |.++|||||+++++|||+|++++||+ ||. |.++..|+||+|| ||. . .|.||+++...
T Consensus 689 F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~----yd~----p~s~~~~iQr~GR-GR~-~--~g~~i~l~~~~ 749 (797)
T 4a2q_A 689 FKTSKDNRLLIATSVADEGIDIVQCNLVVL----YEY----SGNVTKMIQVRGR-GRA-A--GSKCILVTSKT 749 (797)
T ss_dssp -----CCSEEEEECC-------CCCSEEEE----ESC----CSCHHHHHTC-----------CCCEEEEECCH
T ss_pred hhccCCceEEEEcCchhcCCCchhCCEEEE----eCC----CCCHHHHHHhcCC-CCC-C--CceEEEEEeCC
Confidence 999 99999999999999999999999999 999 9999999999999 998 3 48999998654
No 34
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=3.6e-34 Score=361.38 Aligned_cols=296 Identities=24% Similarity=0.317 Sum_probs=225.4
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEEEecCcccCC-----CCcee
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVSLRP-----EASCL 485 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~in~-----~a~Il 485 (1379)
..+|++++++||||||||+.++ ..+....+.+|++|+++|++|+++++++.. .+++++|+..... .++++
T Consensus 152 ~l~rk~vlv~apTGSGKT~~al----~~l~~~~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~~iv~TpGr~~~il 227 (677)
T 3rc3_A 152 AMQRKIIFHSGPTNSGKTYHAI----QKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHV 227 (677)
T ss_dssp TSCCEEEEEECCTTSSHHHHHH----HHHHHSSSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCEECCSTTCCCCSEE
T ss_pred hcCCCEEEEEcCCCCCHHHHHH----HHHHhcCCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCeeEEecCCCccccee
Confidence 4578999999999999998433 333334567999999999999999999987 9999999987532 37899
Q ss_pred eecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcC-ccceEEEecccCCChHHHHHHHhhhcCCcE
Q 039491 486 IMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLP-RHINIVLLSATVPNTVEFADWIGRTKQKKI 564 (1379)
Q Consensus 486 V~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp-~~vqiIlLSATvpN~~efa~wl~~~~~~~i 564 (1379)
++|++.+. ....+++|||||||++.+.+||..|+.++..++ ..++++++|||++....++.+.+ ..+
T Consensus 228 ~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~----~~~ 295 (677)
T 3rc3_A 228 SCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTG----EEV 295 (677)
T ss_dssp EEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHT----CCE
T ss_pred EecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcC----Cce
Confidence 99987552 457889999999999999999999999999998 78999999999655444444432 333
Q ss_pred EEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCC
Q 039491 565 RVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGK 644 (1379)
Q Consensus 565 ~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr 644 (1379)
.+ ....|+.++.... . .+
T Consensus 296 ~v-~~~~r~~~l~~~~---~---------~l------------------------------------------------- 313 (677)
T 3rc3_A 296 EV-RDYKRLTPISVLD---H---------AL------------------------------------------------- 313 (677)
T ss_dssp EE-EECCCSSCEEECS---S---------CC-------------------------------------------------
T ss_pred EE-EEeeecchHHHHH---H---------HH-------------------------------------------------
Confidence 33 2233444432100 0 00
Q ss_pred CCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHH
Q 039491 645 QNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCD 724 (1379)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~ 724 (1379)
..+... ....||||+|++.|+.++..|...+
T Consensus 314 ---------------------------------~~l~~~-~~g~iIf~~s~~~ie~la~~L~~~g--------------- 344 (677)
T 3rc3_A 314 ---------------------------------ESLDNL-RPGDCIVCFSKNDIYSVSRQIEIRG--------------- 344 (677)
T ss_dssp ---------------------------------CSGGGC-CTTEEEECSSHHHHHHHHHHHHHTT---------------
T ss_pred ---------------------------------HHHHhc-CCCCEEEEcCHHHHHHHHHHHHhcC---------------
Confidence 000000 1345899999999999999987632
Q ss_pred HHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcC--CCeeEEEecccccccCCCCCceEEEccccc
Q 039491 725 KAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCR--GVVKVLFSTETFAMGVNAPARTVVFDNLRK 802 (1379)
Q Consensus 725 ~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~--G~ikVLVATetla~GINiPa~tvVI~~~~k 802 (1379)
.+|++|||+|++.+|+.++..|++ |.++|||||+++++|||++...||+.+..|
T Consensus 345 ------------------------~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi~v~~VI~~~~~k 400 (677)
T 3rc3_A 345 ------------------------LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIK 400 (677)
T ss_dssp ------------------------CCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCCCBSEEEESCSBC
T ss_pred ------------------------CCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCcCccEEEECCccc
Confidence 357899999999999999999999 999999999999999999666666666666
Q ss_pred cC-----CcccccCCHHHHHHHhcccCCCCCC-CcEEEEEEecCCCCCHHHHHHHHhcCCCcccc
Q 039491 803 FD-----GREFRQLLPGEYTQMAGRAGRRGLD-KIGTVVVLCRDEIPGESDLKHIIVGSATRLES 861 (1379)
Q Consensus 803 fD-----g~~~rpls~~eyiQmaGRAGRrG~d-~~G~vIil~~~~~~~~~~l~~li~g~~~~L~S 861 (1379)
|+ +...+|.+..+|+||+|||||.|.+ ..|.|++++..+ ...+++++...+.++++
T Consensus 401 ~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d---~~~~~~~~~~~~~~i~~ 462 (677)
T 3rc3_A 401 PSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHED---LSLLKEILKRPVDPIRA 462 (677)
T ss_dssp -----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTH---HHHHHHHHHSCCCCCCC
T ss_pred cccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecch---HHHHHHHHhcCcchhhh
Confidence 52 2236699999999999999999976 459988887553 46788999988888887
No 35
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.4e-34 Score=368.01 Aligned_cols=301 Identities=20% Similarity=0.250 Sum_probs=212.3
Q ss_pred cCCCCCCHHHHHHHHHHHCC------CcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc--
Q 039491 396 DFPFELDNFQKEAIYYLENG------DSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-- 467 (1379)
Q Consensus 396 ~~pFeL~~~Q~eAI~~L~~g------~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-- 467 (1379)
.+||+|+++|++|++.+.++ .+++++||||||||++|.++++..+..+.+++|++||++|+.|+++.|++.+
T Consensus 364 ~lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~ 443 (780)
T 1gm5_A 364 SLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSK 443 (780)
T ss_dssp HSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTC
T ss_pred hCCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhh
Confidence 48999999999999998654 5899999999999999999999999999999999999999999999998875
Q ss_pred ---cEEEEecCccc-----------CCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc
Q 039491 468 ---DVGLLTGDVSL-----------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML 533 (1379)
Q Consensus 468 ---~VglltGdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L 533 (1379)
++++++|+.+. +.+++|+|+||+.+.. ...+.++++||+||+|++....+. .+...
T Consensus 444 ~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~qr~-----~l~~~ 513 (780)
T 1gm5_A 444 FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQRE-----ALMNK 513 (780)
T ss_dssp SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC-----C-----CCCSS
T ss_pred cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHHHHH-----HHHHh
Confidence 78999998763 2358999999998754 245789999999999998544332 22223
Q ss_pred CccceEEEecccCCChHHHHHHHhhhcCCcEEEEcc-CCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhcc
Q 039491 534 PRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGT-TKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNL 612 (1379)
Q Consensus 534 p~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t-~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~ 612 (1379)
...+++++||||+.... ++..... ..++.++.. +....|+..++...
T Consensus 514 ~~~~~vL~mSATp~p~t-l~~~~~g--~~~~s~i~~~p~~r~~i~~~~~~~----------------------------- 561 (780)
T 1gm5_A 514 GKMVDTLVMSATPIPRS-MALAFYG--DLDVTVIDEMPPGRKEVQTMLVPM----------------------------- 561 (780)
T ss_dssp SSCCCEEEEESSCCCHH-HHHHHTC--CSSCEEECCCCSSCCCCEECCCCS-----------------------------
T ss_pred CCCCCEEEEeCCCCHHH-HHHHHhC--CcceeeeeccCCCCcceEEEEecc-----------------------------
Confidence 35689999999964432 2222211 111222211 00001111110000
Q ss_pred ccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEe
Q 039491 613 SAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFC 692 (1379)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv 692 (1379)
.....+...+.... ..+.+++|||
T Consensus 562 -------------------------------------------------------~~~~~l~~~i~~~l-~~g~qvlVf~ 585 (780)
T 1gm5_A 562 -------------------------------------------------------DRVNEVYEFVRQEV-MRGGQAFIVY 585 (780)
T ss_dssp -------------------------------------------------------STHHHHHHHHHHHT-TTSCCBCCBC
T ss_pred -------------------------------------------------------chHHHHHHHHHHHH-hcCCcEEEEe
Confidence 01111222222211 2357899999
Q ss_pred CChhHHH--------HHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHH
Q 039491 693 FSKNHCD--------KLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKE 764 (1379)
Q Consensus 693 ~Srk~ce--------~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re 764 (1379)
++...++ .+++.|.... + -..+|+++||+|++.+|+
T Consensus 586 ~~ie~se~l~~~~a~~l~~~L~~~~---------------------------~---------~~~~v~~lHG~m~~~eR~ 629 (780)
T 1gm5_A 586 PLIEESDKLNVKSAVEMYEYLSKEV---------------------------F---------PEFKLGLMHGRLSQEEKD 629 (780)
T ss_dssp CCC--------CHHHHHHHSGGGSC---------------------------C------------CBCCCCSSSCCSCSH
T ss_pred cchhhhhhhhHHHHHHHHHHHHhhh---------------------------c---------CCCcEEEEeCCCCHHHHH
Confidence 9876543 3333322200 0 023588999999999999
Q ss_pred HHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCccccc-CCHHHHHHHhcccCCCCCCCcEEEEEEecC
Q 039491 765 VIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQ-LLPGEYTQMAGRAGRRGLDKIGTVVVLCRD 840 (1379)
Q Consensus 765 ~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rp-ls~~eyiQmaGRAGRrG~d~~G~vIil~~~ 840 (1379)
.++..|++|.++|||||+++++|||+|++++||. ||. + .+...|.||+|||||.|.. |.||+++++
T Consensus 630 ~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi----~d~----~r~~l~~l~Qr~GRaGR~g~~--g~~ill~~~ 696 (780)
T 1gm5_A 630 RVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI----ENP----ERFGLAQLHQLRGRVGRGGQE--AYCFLVVGD 696 (780)
T ss_dssp HHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB----CSC----SSSCTTHHHHHHHTSCCSSTT--CEEECCCCS
T ss_pred HHHHHHHCCCCeEEEECCCCCccccCCCCCEEEE----eCC----CCCCHHHHHHHhcccCcCCCC--CEEEEEECC
Confidence 9999999999999999999999999999999998 777 4 3678899999999999965 999999873
No 36
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=3e-33 Score=344.34 Aligned_cols=314 Identities=15% Similarity=0.144 Sum_probs=225.1
Q ss_pred CCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCC-cEEEecchHHHHHHHHHHHhcc--c---cEEE
Q 039491 398 PFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCT-RAVYTAPIKTISNQKYRDFSGK--F---DVGL 471 (1379)
Q Consensus 398 pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~-raIylsPtkaLsnQk~~~~~~~--f---~Vgl 471 (1379)
+++|+++|.+|+..+.+++++++++|||+|||++|..++...+..+. ++||++|+++|+.|++++|++. + .++.
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~ 190 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEE
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEE
Confidence 56899999999999998999999999999999999988888775554 9999999999999999999876 3 6888
Q ss_pred EecCcccC----CCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCC
Q 039491 472 LTGDVSLR----PEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVP 547 (1379)
Q Consensus 472 ltGdv~in----~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvp 547 (1379)
++|+.+.. ...+|+|+|++.|.. .....+.++++|||||||++.+ ..++.++..++...++++||||++
T Consensus 191 ~~~~~~~~~~~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~lSATp~ 263 (510)
T 2oca_A 191 IGGGASKDDKYKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSGSLR 263 (510)
T ss_dssp CGGGCCTTGGGCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEEEESCGG
T ss_pred EecCCccccccccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEEEEeCCC
Confidence 99988765 678999999997643 3345678999999999999974 457777788878889999999987
Q ss_pred ChH----HHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeec-c-Ccccc----hhhHHHHHHHHHhhccccccC
Q 039491 548 NTV----EFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVC-E-NEAFI----PQGWKAAKDAYKRKNLSAASG 617 (1379)
Q Consensus 548 N~~----efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~-d-~~~f~----~~~~~~~~~~l~~~~~~~~~~ 617 (1379)
+.. .+..+++ +..........+ -..++ ....+..+. . ..... ...+......+...
T Consensus 264 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 329 (510)
T 2oca_A 264 DGKANIMQYVGMFG-----EIFKPVTTSKLM-EDGQV-TELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGL------- 329 (510)
T ss_dssp GCSSCHHHHHHHHC-----SEECCCCCC-----------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTC-------
T ss_pred CCcccHHHhHHhhC-----CeEEeeCHHHHh-hCCcC-CCceEEEEeecCChHHhccccccchHHHHHHHhcc-------
Confidence 653 2222332 111111110000 00000 000111100 0 00000 00111111000000
Q ss_pred CCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhH
Q 039491 618 ATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNH 697 (1379)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ 697 (1379)
......+..++......+..++|||+. .+.
T Consensus 330 -------------------------------------------------~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~ 359 (510)
T 2oca_A 330 -------------------------------------------------SKRNKWIAKLAIKLAQKDENAFVMFKH-VSH 359 (510)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHHHTTTCEEEEEESS-HHH
T ss_pred -------------------------------------------------HHHHHHHHHHHHHHHhcCCCeEEEEec-HHH
Confidence 001222344444444445567777777 889
Q ss_pred HHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeE
Q 039491 698 CDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKV 777 (1379)
Q Consensus 698 ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikV 777 (1379)
|+.+++.|.+.+. .+.++||+|++.+|+.++..|++|.++|
T Consensus 360 ~~~l~~~L~~~~~---------------------------------------~v~~~~g~~~~~~r~~i~~~f~~g~~~v 400 (510)
T 2oca_A 360 GKAIFDLIKNEYD---------------------------------------KVYYVSGEVDTETRNIMKTLAENGKGII 400 (510)
T ss_dssp HHHHHHHHHTTCS---------------------------------------SEEEESSSTTHHHHHHHHHHHHHCCSCE
T ss_pred HHHHHHHHHHcCC---------------------------------------CeEEEECCCCHHHHHHHHHHHhCCCCCE
Confidence 9999998876432 2778999999999999999999999999
Q ss_pred EEec-ccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCC
Q 039491 778 LFST-ETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLD 829 (1379)
Q Consensus 778 LVAT-etla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d 829 (1379)
|||| +++++|+|+|++++||. ++. +.++..|+||+|||||.|..
T Consensus 401 Lv~T~~~~~~GiDip~v~~vi~----~~~----~~s~~~~~Q~~GR~gR~g~~ 445 (510)
T 2oca_A 401 IVASYGVFSTGISVKNLHHVVL----AHG----VKSKIIVLQTIGRVLRKHGS 445 (510)
T ss_dssp EEEEHHHHHHSCCCCSEEEEEE----SSC----CCSCCHHHHHHHHHHTTTCC
T ss_pred EEEEcChhhcccccccCcEEEE----eCC----CCCHHHHHHHHhcccccCCC
Confidence 9999 99999999999999998 888 88999999999999999976
No 37
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=5.3e-34 Score=347.69 Aligned_cols=353 Identities=16% Similarity=0.092 Sum_probs=230.4
Q ss_pred CCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc--c-EEEEe
Q 039491 397 FPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF--D-VGLLT 473 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f--~-Vgllt 473 (1379)
++++|+++|++|+..+.+++++++++|||+|||++|..++... +.++||++|+++|+.|++++|++ | + +++++
T Consensus 90 ~~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~-~~~~~v~~~~ 165 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI-FGEEYVGEFS 165 (472)
T ss_dssp CCCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGG-GCGGGEEEBS
T ss_pred CCCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHh-CCCcceEEEC
Confidence 4678999999999999999999999999999999998887765 78999999999999999999999 6 6 99999
Q ss_pred cCcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChHH--
Q 039491 474 GDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVE-- 551 (1379)
Q Consensus 474 Gdv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~e-- 551 (1379)
|+... ..+|+|+|++.+...+.. ...++++|||||||++.+..+. .++..++ ..++++||||+.+...
T Consensus 166 g~~~~--~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~----~~~~~~~-~~~~l~lSATp~~~~~~~ 235 (472)
T 2fwr_A 166 GRIKE--LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYV----QIAQMSI-APFRLGLTATFEREDGRH 235 (472)
T ss_dssp SSCBC--CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTH----HHHHTCC-CSEEEEEESCCCCTTSGG
T ss_pred CCcCC--cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHH----HHHHhcC-CCeEEEEecCccCCCCHH
Confidence 98763 578999999998765532 2356999999999999876543 3555554 5789999999875432
Q ss_pred --HHHHHhhhcCCcEEEEcc---CCC-CcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCC
Q 039491 552 --FADWIGRTKQKKIRVTGT---TKR-PVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGA 625 (1379)
Q Consensus 552 --fa~wl~~~~~~~i~vi~t---~~R-pvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 625 (1379)
+..+++ ..++-... ..+ ..+..... + .++-.......+......+....... .. ....
T Consensus 236 ~~l~~~~~----~~~~~~~~~~l~~~~l~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~l~~~-~~----~~~~ 299 (472)
T 2fwr_A 236 EILKEVVG----GKVFELFPDSLAGKHLAKYTIKR-----I--FVPLAEDERVEYEKREKVYKQFLRAR-GI----TLRR 299 (472)
T ss_dssp GSHHHHTC----CEEEECCHHHHTSCCCCSEEECC-----E--EECCCHHHHHHTTTTTHHHHSCSSSC-CC----TTTC
T ss_pred HHHHHHhC----CeEeecCHHHHhcCcCCCeEEEE-----E--EcCCCHHHHHHHHHHHHHHHHHHHhc-Cc----cccc
Confidence 333333 11111100 000 00000000 0 00000000000000001111100000 00 0000
Q ss_pred CCCcccccccccCCCCCCCCCCccccccccCCCCCCC---cccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHH
Q 039491 626 SSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNN---WGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLA 702 (1379)
Q Consensus 626 ~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA 702 (1379)
...- ... ....+....... ..... .........+...+...+......++||||++++.++.++
T Consensus 300 ---~~~~--~~~-~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~ 366 (472)
T 2fwr_A 300 ---AEDF--NKI-VMASGYDERAYE-------ALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRIS 366 (472)
T ss_dssp ---CSSS--TTT-TTTTCCSSSSST-------TTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHH
T ss_pred ---hhhH--HHH-HHHhccCHHHHH-------HHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHH
Confidence 0000 000 000000000000 00000 0000011234455666666667789999999999999998
Q ss_pred HHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecc
Q 039491 703 DGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTE 782 (1379)
Q Consensus 703 ~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATe 782 (1379)
..|. +.++||++++.+|+.++..|++|.++|||||+
T Consensus 367 ~~l~--------------------------------------------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~ 402 (472)
T 2fwr_A 367 KVFL--------------------------------------------IPAITHRTSREEREEILEGFRTGRFRAIVSSQ 402 (472)
T ss_dssp HHTT--------------------------------------------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSS
T ss_pred HHhC--------------------------------------------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcC
Confidence 8762 23589999999999999999999999999999
Q ss_pred cccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCC-CcEEEEEEecCCCCC
Q 039491 783 TFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLD-KIGTVVVLCRDEIPG 844 (1379)
Q Consensus 783 tla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d-~~G~vIil~~~~~~~ 844 (1379)
++++|+|+|++++||. ||. +.++..|+||+|||||.|.. ....+|.++..+..+
T Consensus 403 ~~~~Gldlp~~~~Vi~----~~~----~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~e 457 (472)
T 2fwr_A 403 VLDEGIDVPDANVGVI----MSG----SGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGE 457 (472)
T ss_dssp CCCSSSCSCCBSEEEE----ECC----SSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC-
T ss_pred chhcCcccccCcEEEE----ECC----CCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCch
Confidence 9999999999999999 888 89999999999999999976 567888888765433
No 38
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=9.6e-33 Score=367.99 Aligned_cols=303 Identities=20% Similarity=0.243 Sum_probs=230.3
Q ss_pred hccCCCCCCHHHHHHHHHHHC----CC--cEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc
Q 039491 394 ALDFPFELDNFQKEAIYYLEN----GD--SVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF 467 (1379)
Q Consensus 394 a~~~pFeL~~~Q~eAI~~L~~----g~--sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f 467 (1379)
...|||+++++|.+|++.+.+ |+ +++++|+||+|||.+|..++..++..+.+++|++||++|++|+++.|++.|
T Consensus 597 ~~~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~ 676 (1151)
T 2eyq_A 597 CDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRF 676 (1151)
T ss_dssp HHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHS
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHh
Confidence 346899999999999999865 65 899999999999999999998888889999999999999999999999876
Q ss_pred -----cEEEEecCccc-----------CCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHH
Q 039491 468 -----DVGLLTGDVSL-----------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVII 531 (1379)
Q Consensus 468 -----~VglltGdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~ 531 (1379)
+++.++|..+. +...+|+|+|++.|.. ...+.++++||+||||++ |....+.+.
T Consensus 677 ~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~-----~~~~~~l~lvIiDEaH~~-----g~~~~~~l~ 746 (1151)
T 2eyq_A 677 ANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS-----DVKFKDLGLLIVDEEHRF-----GVRHKERIK 746 (1151)
T ss_dssp TTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHS-----CCCCSSEEEEEEESGGGS-----CHHHHHHHH
T ss_pred hcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhC-----CccccccceEEEechHhc-----ChHHHHHHH
Confidence 68888876542 2358999999987642 345789999999999985 556677777
Q ss_pred HcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccC-CCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhh
Q 039491 532 MLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTT-KRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRK 610 (1379)
Q Consensus 532 ~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~-~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~ 610 (1379)
.++..+++++||||+.... +...+... ....++.+. ....++..++....
T Consensus 747 ~l~~~~~vl~lSATp~p~~-l~~~~~~~--~~~~~i~~~~~~r~~i~~~~~~~~-------------------------- 797 (1151)
T 2eyq_A 747 AMRANVDILTLTATPIPRT-LNMAMSGM--RDLSIIATPPARRLAVKTFVREYD-------------------------- 797 (1151)
T ss_dssp HHHTTSEEEEEESSCCCHH-HHHHHTTT--SEEEECCCCCCBCBCEEEEEEECC--------------------------
T ss_pred HhcCCCCEEEEcCCCChhh-HHHHHhcC--CCceEEecCCCCccccEEEEecCC--------------------------
Confidence 7888899999999965432 12222211 122222221 11122322221100
Q ss_pred ccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEE
Q 039491 611 NLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVI 690 (1379)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIV 690 (1379)
.......++..+. .+.+++|
T Consensus 798 ----------------------------------------------------------~~~i~~~il~~l~--~g~qvlv 817 (1151)
T 2eyq_A 798 ----------------------------------------------------------SMVVREAILREIL--RGGQVYY 817 (1151)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHHT--TTCEEEE
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHh--cCCeEEE
Confidence 1112233333333 3478999
Q ss_pred EeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHh
Q 039491 691 FCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLF 770 (1379)
Q Consensus 691 Fv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF 770 (1379)
||++++.|+.++..|.+.. -..+|+++||+|++.+|+.++..|
T Consensus 818 f~~~v~~~~~l~~~L~~~~-------------------------------------p~~~v~~lhg~~~~~eR~~il~~F 860 (1151)
T 2eyq_A 818 LYNDVENIQKAAERLAELV-------------------------------------PEARIAIGHGQMRERELERVMNDF 860 (1151)
T ss_dssp ECCCSSCHHHHHHHHHHHC-------------------------------------TTSCEEECCSSCCHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHHhC-------------------------------------CCCeEEEEeCCCCHHHHHHHHHHH
Confidence 9999999999999886521 023588999999999999999999
Q ss_pred cCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCC
Q 039491 771 CRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 771 ~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~ 841 (1379)
++|.++|||||+++++|||+|++++||. ++.. +.+...|+||+||+||.|.. |.||+++.++
T Consensus 861 ~~g~~~VLVaT~v~e~GiDip~v~~VIi----~~~~---~~~l~~l~Qr~GRvgR~g~~--g~~~ll~~~~ 922 (1151)
T 2eyq_A 861 HHQRFNVLVCTTIIETGIDIPTANTIII----ERAD---HFGLAQLHQLRGRVGRSHHQ--AYAWLLTPHP 922 (1151)
T ss_dssp HTTSCCEEEESSTTGGGSCCTTEEEEEE----TTTT---SSCHHHHHHHHTTCCBTTBC--EEEEEEECCG
T ss_pred HcCCCcEEEECCcceeeecccCCcEEEE----eCCC---CCCHHHHHHHHhccCcCCCc--eEEEEEECCc
Confidence 9999999999999999999999998886 4441 34678999999999999964 9999998653
No 39
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.1e-33 Score=371.51 Aligned_cols=389 Identities=15% Similarity=0.141 Sum_probs=200.1
Q ss_pred CCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc-----CCcEEEecchHHHHHHHHHHHhccc-----
Q 039491 398 PFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH-----CTRAVYTAPIKTISNQKYRDFSGKF----- 467 (1379)
Q Consensus 398 pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~-----~~raIylsPtkaLsnQk~~~~~~~f----- 467 (1379)
+++|+++|.+|++.+.+|++++++||||+|||++|.+++...+.. +.++||++|+++|+.|+++.|++.+
T Consensus 246 ~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (936)
T 4a2w_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (936)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 456999999999999999999999999999999999999888755 7899999999999999999999875
Q ss_pred cEEEEecCcccCC-------CCceeeecHHHHHHHHhcCcc-cCCCccEEEEeccCCCCCccchhHHHHHHHHc------
Q 039491 468 DVGLLTGDVSLRP-------EASCLIMTTEILRSMLYRGAD-IIRDIEWVIFDEVHYVNDIERGVVWEEVIIML------ 533 (1379)
Q Consensus 468 ~VglltGdv~in~-------~a~IlV~TpEiL~smL~~~~~-~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L------ 533 (1379)
+++.++|+...+. .++|+|+||++|.+++.++.. .+.++++|||||||++.+.. . +..++..+
T Consensus 326 ~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~--~-~~~i~~~~~~~~~~ 402 (936)
T 4a2w_A 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH--P-YNVLMTRYLEQKFN 402 (936)
T ss_dssp CEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTC--H-HHHHHHHHHHHHHT
T ss_pred eEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCc--c-HHHHHHHHHHHhhc
Confidence 7999999986553 479999999999999987665 67899999999999998753 2 43333221
Q ss_pred --CccceEEEecccCCC--hHHHHHHHh-------hhcCCcEEEEccC------CCCcCceEEEeecCcee---------
Q 039491 534 --PRHINIVLLSATVPN--TVEFADWIG-------RTKQKKIRVTGTT------KRPVPLEHCLYYSGEFY--------- 587 (1379)
Q Consensus 534 --p~~vqiIlLSATvpN--~~efa~wl~-------~~~~~~i~vi~t~------~RpvpLe~~l~~~~~l~--------- 587 (1379)
.+..++++||||+.. ..++.+++. ......+...... +-+.|...+........
T Consensus 403 ~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~ 482 (936)
T 4a2w_A 403 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 482 (936)
T ss_dssp TCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred cCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHH
Confidence 345899999999853 222222111 1111111111000 00112222211110000
Q ss_pred -------------e---e--ccCcccchhhHHHHHHHHHhh--------------------------------ccccccC
Q 039491 588 -------------K---V--CENEAFIPQGWKAAKDAYKRK--------------------------------NLSAASG 617 (1379)
Q Consensus 588 -------------~---i--~d~~~f~~~~~~~~~~~l~~~--------------------------------~~~~~~~ 617 (1379)
. + .....+....+......+.+. .......
T Consensus 483 l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~ 562 (936)
T 4a2w_A 483 LMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 562 (936)
T ss_dssp HHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 0 0 000000000000000000000 0000000
Q ss_pred CCCCCCCCCCCccc-ccccccCCCCCCCC--C---CccccccccCCCCCCCcccccchhHHHHHHHHHHHh----CCCCC
Q 039491 618 ATGSYAGASSPRDG-ARAQKREHPNRGKQ--N---KHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSK----KSLLP 687 (1379)
Q Consensus 618 ~~~~~~~~~~~~~~-~~~~~~~~~~~gr~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~----~~~~p 687 (1379)
+........... ............+. . ............ ......++..|++.|.. ....+
T Consensus 563 --~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~-------~~~~~~K~~~L~~lL~~~~~~~~~~r 633 (936)
T 4a2w_A 563 --RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKD-------ETNENPKLEELVCILDDAYRYNPQTR 633 (936)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTS-------TTCCCHHHHHHHHHHHHTTTSCTTCC
T ss_pred --hHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhc-------cCCCCHHHHHHHHHHHHHhccCCCCe
Confidence 000000000000 00000000000000 0 000000000000 00023345556666654 45689
Q ss_pred EEEEeCChhHHHHHHHHhhcC----CCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHH
Q 039491 688 VVIFCFSKNHCDKLADGMSGI----DLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVK 763 (1379)
Q Consensus 688 vIVFv~Srk~ce~lA~~L~~~----~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~R 763 (1379)
+||||.+++.|+.++..|... ++... .+...+...+||+|++.+|
T Consensus 634 vLIF~~t~~~ae~L~~~L~~~~~l~~ik~~-------------------------------~l~G~~~~~~hg~m~~~eR 682 (936)
T 4a2w_A 634 TLLFAKTRALVSALKKCMEENPILNYIKPG-------------------------------VLMGRGRRDQTTGMTLPSQ 682 (936)
T ss_dssp EEEEESSHHHHHHHHHHHHHCSTTSSCCCE-------------------------------EC-----------------
T ss_pred EEEEeCCHHHHHHHHHHHhhCcccccccee-------------------------------EEecCCCcccCCCCCHHHH
Confidence 999999999999999999764 22221 1223445668999999999
Q ss_pred HHHHHHhcC-CCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCC
Q 039491 764 EVIEMLFCR-GVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 764 e~Ve~lF~~-G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~ 841 (1379)
..++..|++ |.++|||||+++++|||+|++++||+ ||. |.++..|+||+|| ||.. .|.||+++...
T Consensus 683 ~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~----yD~----p~s~~~~iQr~GR-GR~~---~g~vi~Li~~~ 749 (936)
T 4a2w_A 683 KGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL----YEY----SGNVTKMIQVRGR-GRAA---GSKCILVTSKT 749 (936)
T ss_dssp -----------CCSEEEEECC------CCCCSEEEE----ESC----CSCSHHHHCC-----------CCCEEEEESCH
T ss_pred HHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE----eCC----CCCHHHHHHhcCC-CCCC---CCEEEEEEeCC
Confidence 999999999 99999999999999999999999999 999 9999999999999 9883 38889888654
No 40
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=3.1e-33 Score=359.37 Aligned_cols=419 Identities=16% Similarity=0.143 Sum_probs=271.7
Q ss_pred cccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHH-HCCCcEEEEcCCCccHHHHHHHHHHH-HHhc--CCc
Q 039491 370 KEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYL-ENGDSVFVAAHTSAGKTVVAEYAFAL-ATKH--CTR 445 (1379)
Q Consensus 370 ~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L-~~g~sVlV~ApTGSGKTlvae~aI~~-~l~~--~~r 445 (1379)
...|..++..+.+.+.+.+. +..|.+.|+++|..+ ..+++++++||||||||+..-..+.. .... +.+
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r--------~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ 142 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIR--------RELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQ 142 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHH--------TTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCE
T ss_pred CCCccccCCCHHHHHHHHHh--------hcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCce
Confidence 45799999988887777652 223667888888775 56678999999999999932111221 1222 677
Q ss_pred EEEecchHHHHHHHHHHHhccc--cEEEEec-----CcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCC-C
Q 039491 446 AVYTAPIKTISNQKYRDFSGKF--DVGLLTG-----DVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHY-V 517 (1379)
Q Consensus 446 aIylsPtkaLsnQk~~~~~~~f--~VglltG-----dv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~-l 517 (1379)
++|++|+++|+.|+++.+.+.+ .++..+| +.....+.+|+|+||+++..++... ..+.++++|||||+|. .
T Consensus 143 ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R~ 221 (773)
T 2xau_A 143 VACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHERT 221 (773)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGCC
T ss_pred EEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCccccc
Confidence 9999999999999999887765 3322222 2223457899999999998877664 4689999999999995 4
Q ss_pred CCccc-hhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccc
Q 039491 518 NDIER-GVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFI 596 (1379)
Q Consensus 518 ~d~~r-G~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~ 596 (1379)
.+.+. ...+..+... .+..++|+||||+ +...+++|++. ..++....+..|+++++.... ..
T Consensus 222 ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~-~~~~l~~~~~~-----~~vi~v~gr~~pv~~~~~~~~-------~~--- 284 (773)
T 2xau_A 222 LATDILMGLLKQVVKR-RPDLKIIIMSATL-DAEKFQRYFND-----APLLAVPGRTYPVELYYTPEF-------QR--- 284 (773)
T ss_dssp HHHHHHHHHHHHHHHH-CTTCEEEEEESCS-CCHHHHHHTTS-----CCEEECCCCCCCEEEECCSSC-------CS---
T ss_pred cchHHHHHHHHHHHHh-CCCceEEEEeccc-cHHHHHHHhcC-----CCcccccCcccceEEEEecCC-------ch---
Confidence 43221 1123333333 3568999999999 56788898863 223444556667665432111 00
Q ss_pred hhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHH
Q 039491 597 PQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTL 676 (1379)
Q Consensus 597 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 676 (1379)
. .....+..+
T Consensus 285 --~--------------------------------------------------------------------~~~~~l~~l 294 (773)
T 2xau_A 285 --D--------------------------------------------------------------------YLDSAIRTV 294 (773)
T ss_dssp --C--------------------------------------------------------------------HHHHHHHHH
T ss_pred --h--------------------------------------------------------------------HHHHHHHHH
Confidence 0 011223344
Q ss_pred HHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecC
Q 039491 677 INKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHA 756 (1379)
Q Consensus 677 i~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHg 756 (1379)
+..+.....+++||||++++.|+.++..|... ...... -.......|..+||
T Consensus 295 ~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~----------~~~l~~------------------~~~~~~~~v~~lhg 346 (773)
T 2xau_A 295 LQIHATEEAGDILLFLTGEDEIEDAVRKISLE----------GDQLVR------------------EEGCGPLSVYPLYG 346 (773)
T ss_dssp HHHHHHSCSCEEEEECSCHHHHHHHHHHHHHH----------HHHHHH------------------HHCCCCEEEEEECT
T ss_pred HHHHHhcCCCCEEEECCCHHHHHHHHHHHHHH----------HHhhcc------------------cccCCCeEEEEeCC
Confidence 44455555689999999999999999988641 000000 00001234889999
Q ss_pred CCChHHHHHHHHHhc-----CCCeeEEEecccccccCCCCCceEEEccc----cccCCcc------cccCCHHHHHHHhc
Q 039491 757 GLLPIVKEVIEMLFC-----RGVVKVLFSTETFAMGVNAPARTVVFDNL----RKFDGRE------FRQLLPGEYTQMAG 821 (1379)
Q Consensus 757 gL~~~~Re~Ve~lF~-----~G~ikVLVATetla~GINiPa~tvVI~~~----~kfDg~~------~rpls~~eyiQmaG 821 (1379)
+|++.+|..+++.|+ +|.++|||||+++++|||+|++++||+.. ..||+.. ..|.+..+|+||+|
T Consensus 347 ~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~G 426 (773)
T 2xau_A 347 SLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAG 426 (773)
T ss_dssp TCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHH
T ss_pred CCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhcc
Confidence 999999999999999 99999999999999999999999999822 2344421 12789999999999
Q ss_pred ccCCCCCCCcEEEEEEecCCCCCHHHH-HHHHh-cCCCcccccccccHHHHHHHHhhccccHHHHHhhChhhHHhcCCcH
Q 039491 822 RAGRRGLDKIGTVVVLCRDEIPGESDL-KHIIV-GSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHSQKKLP 899 (1379)
Q Consensus 822 RAGRrG~d~~G~vIil~~~~~~~~~~l-~~li~-g~~~~L~S~f~lty~miLnLlr~e~~~~e~~l~~SF~e~~~~~~~~ 899 (1379)
||||.+ .|.||.++++ ..+ ..+.. ..|+.+.+.+. +++|.+..++--++ ....| .......
T Consensus 427 RaGR~~---~G~~~~l~~~-----~~~~~~l~~~~~pEi~r~~L~---~~~L~l~~~gi~~~---~~f~~---~~~p~~~ 489 (773)
T 2xau_A 427 RAGRTR---PGKCFRLYTE-----EAFQKELIEQSYPEILRSNLS---STVLELKKLGIDDL---VHFDF---MDPPAPE 489 (773)
T ss_dssp GGGSSS---SEEEEESSCH-----HHHHHTSCSSCCCGGGGSCCH---HHHHHHHHTTCCCG---GGCCC---SSCCCHH
T ss_pred ccCCCC---CCEEEEEecH-----HHhcccccccCCCccccCcHH---HHHHHHHHcCCCCh---hhccc---cCCCcHH
Confidence 999983 4999999843 334 22322 23344444433 66777765432222 22222 2222222
Q ss_pred HHHHHHHHHHcCCCCcccccCCcchHHHHHHHHHH
Q 039491 900 EQQQLLMRKLAQPPKTIECIKGEPAIEEYYDMYYE 934 (1379)
Q Consensus 900 ~~~~~l~~~l~~~~~~i~c~~~~~~~~~~~~~~~~ 934 (1379)
.+...+ ..| ..+.+++.++.++.+...+.+
T Consensus 490 ~i~~a~-~~L----~~lgald~~~~lT~lG~~~a~ 519 (773)
T 2xau_A 490 TMMRAL-EEL----NYLACLDDEGNLTPLGRLASQ 519 (773)
T ss_dssp HHHHHH-HHH----HHTTSBCTTSCBCHHHHHHTT
T ss_pred HHHHHH-HHH----HHcCCcccCCCcChhhhhhcc
Confidence 334444 333 344555555667776654443
No 41
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=5.3e-34 Score=377.87 Aligned_cols=268 Identities=15% Similarity=0.118 Sum_probs=192.9
Q ss_pred hhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-----
Q 039491 393 LALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF----- 467 (1379)
Q Consensus 393 ~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f----- 467 (1379)
+...++|+| ++|.+|++.+.+|++++++||||||||+.++.++......+.++||++||++|++|+++.+++.+
T Consensus 50 ~~~~~g~~p-~iQ~~ai~~il~g~dvlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i 128 (1054)
T 1gku_B 50 FRKCVGEPR-AIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGV 128 (1054)
T ss_dssp HHTTTCSCC-HHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHhcCCCH-HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCC
Confidence 344689999 99999999999999999999999999984443444445678999999999999999999998765
Q ss_pred ----cEEEEecCcccCC---------CCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc-
Q 039491 468 ----DVGLLTGDVSLRP---------EASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML- 533 (1379)
Q Consensus 468 ----~VglltGdv~in~---------~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L- 533 (1379)
.++.++|+.+... .++|+|+||++|.+++.+ ++++++|||||||++.+ +|..++.++..+
T Consensus 129 ~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~~~i~~~lg 202 (1054)
T 1gku_B 129 GTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNVDKLLHLLG 202 (1054)
T ss_dssp SGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHHHHHHHHTT
T ss_pred CccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccHHHHHHHhC
Confidence 4788999876432 279999999999987765 67999999999999997 478888888766
Q ss_pred ----------CccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHH
Q 039491 534 ----------PRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAA 603 (1379)
Q Consensus 534 ----------p~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~ 603 (1379)
+...|++++|||+++..+++.++..... .+.+.........+.+++....
T Consensus 203 f~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~-~i~v~~~~~~~~~i~~~~~~~~------------------- 262 (1054)
T 1gku_B 203 FHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLL-NFDIGSSRITVRNVEDVAVNDE------------------- 262 (1054)
T ss_dssp EEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHH-CCCCSCCEECCCCEEEEEESCC-------------------
T ss_pred cchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcce-EEEccCcccCcCCceEEEechh-------------------
Confidence 4567899999998876433333321110 0000000001111222211000
Q ss_pred HHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhC
Q 039491 604 KDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKK 683 (1379)
Q Consensus 604 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~ 683 (1379)
... .+...+...
T Consensus 263 -----------------------------------------------------------------k~~---~L~~ll~~~ 274 (1054)
T 1gku_B 263 -----------------------------------------------------------------SIS---TLSSILEKL 274 (1054)
T ss_dssp -----------------------------------------------------------------CTT---TTHHHHTTS
T ss_pred -----------------------------------------------------------------HHH---HHHHHHhhc
Confidence 001 122233332
Q ss_pred CCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHH
Q 039491 684 SLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVK 763 (1379)
Q Consensus 684 ~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~R 763 (1379)
..++||||++++.|+.++..|... + .++++||+|
T Consensus 275 -~~~~LVF~~t~~~a~~l~~~L~~~-~---------------------------------------~v~~lhg~~----- 308 (1054)
T 1gku_B 275 -GTGGIIYARTGEEAEEIYESLKNK-F---------------------------------------RIGIVTATK----- 308 (1054)
T ss_dssp -CSCEEEEESSHHHHHHHHHTTTTS-S---------------------------------------CEEECTTSS-----
T ss_pred -CCCEEEEEcCHHHHHHHHHHHhhc-c---------------------------------------CeeEEeccH-----
Confidence 478999999999999999998763 1 267899998
Q ss_pred HHHHHHhcCCCeeEEEe----cccccccCCCCCc-eEEEccccccCC
Q 039491 764 EVIEMLFCRGVVKVLFS----TETFAMGVNAPAR-TVVFDNLRKFDG 805 (1379)
Q Consensus 764 e~Ve~lF~~G~ikVLVA----Tetla~GINiPa~-tvVI~~~~kfDg 805 (1379)
+.++..|++|.++|||| |+++++|||+|++ ++||+ ||.
T Consensus 309 ~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~----~~~ 351 (1054)
T 1gku_B 309 KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVF----VGC 351 (1054)
T ss_dssp SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEE----ESC
T ss_pred HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEE----eCC
Confidence 36788899999999999 9999999999995 99998 776
No 42
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=6.3e-33 Score=337.26 Aligned_cols=285 Identities=16% Similarity=0.111 Sum_probs=202.8
Q ss_pred CCHHHHHHHHHHHCCCcE-EEEcCCCccHHHHHHHHHHH-HHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCc--
Q 039491 401 LDNFQKEAIYYLENGDSV-FVAAHTSAGKTVVAEYAFAL-ATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDV-- 476 (1379)
Q Consensus 401 L~~~Q~eAI~~L~~g~sV-lV~ApTGSGKTlvae~aI~~-~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv-- 476 (1379)
++|+|+ +|+.+.+++++ +++||||||||++|.++++. .+..+.++||++||++|++|+++.+... .++...+..
T Consensus 5 ~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~-~v~~~~~~~~~ 82 (451)
T 2jlq_A 5 GEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGL-PIRYQTPAVKS 82 (451)
T ss_dssp CSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS-CEEECCTTCSC
T ss_pred CCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCc-eeeeeeccccc
Confidence 778875 78888887766 99999999999998888765 4567789999999999999999998643 454433333
Q ss_pred ccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHH-cCccceEEEecccCCChHHHHHH
Q 039491 477 SLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIM-LPRHINIVLLSATVPNTVEFADW 555 (1379)
Q Consensus 477 ~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~-Lp~~vqiIlLSATvpN~~efa~w 555 (1379)
...+...+.++|++.+...+.+. ..+.++++|||||||++ +......+..+... .++++|+++||||+++... .+
T Consensus 83 ~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~--~~ 158 (451)
T 2jlq_A 83 DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTD--PF 158 (451)
T ss_dssp CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCC--SS
T ss_pred cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCccch--hh
Confidence 23455678999999998887655 45789999999999988 44444444444332 3567999999999876321 00
Q ss_pred HhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCccccccc
Q 039491 556 IGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQ 635 (1379)
Q Consensus 556 l~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1379)
. ......+... +++|... +
T Consensus 159 ~---~~~~~~~~~~--~~~p~~~----------------~---------------------------------------- 177 (451)
T 2jlq_A 159 P---QSNSPIEDIE--REIPERS----------------W---------------------------------------- 177 (451)
T ss_dssp C---CCSSCEEEEE--CCCCSSC----------------C----------------------------------------
T ss_pred h---cCCCceEecC--ccCCchh----------------h----------------------------------------
Confidence 0 0000000000 0100000 0
Q ss_pred ccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchh
Q 039491 636 KREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSE 715 (1379)
Q Consensus 636 ~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~e 715 (1379)
..++..+... ..++||||+|++.|+.++..|...++.
T Consensus 178 --------------------------------------~~~~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~g~~---- 214 (451)
T 2jlq_A 178 --------------------------------------NTGFDWITDY-QGKTVWFVPSIKAGNDIANCLRKSGKR---- 214 (451)
T ss_dssp --------------------------------------SSSCHHHHHC-CSCEEEECSSHHHHHHHHHHHHTTTCC----
T ss_pred --------------------------------------HHHHHHHHhC-CCCEEEEcCCHHHHHHHHHHHHHcCCe----
Confidence 0001112222 468999999999999999999775432
Q ss_pred hhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceE
Q 039491 716 KSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTV 795 (1379)
Q Consensus 716 k~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tv 795 (1379)
+..+||.+ ++.++..|++|.++|||||+++++|||+|+ ++
T Consensus 215 -----------------------------------~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~ 254 (451)
T 2jlq_A 215 -----------------------------------VIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GR 254 (451)
T ss_dssp -----------------------------------EEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SE
T ss_pred -----------------------------------EEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CE
Confidence 45678865 467899999999999999999999999999 99
Q ss_pred EEccccccC----------Ccc------cccCCHHHHHHHhcccCCCCCCCcEEEEEEecC
Q 039491 796 VFDNLRKFD----------GRE------FRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRD 840 (1379)
Q Consensus 796 VI~~~~kfD----------g~~------~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~ 840 (1379)
||+ || +.. ..|.+..+|+||+|||||.|.+ .|.++++...
T Consensus 255 VI~----~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~-~g~~~~~~~~ 310 (451)
T 2jlq_A 255 VID----PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ-EDDQYVFSGD 310 (451)
T ss_dssp EEE----CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC-CCEEEEECSC
T ss_pred EEE----CCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCC-CccEEEEeCC
Confidence 988 54 100 0488999999999999999973 4778877643
No 43
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.97 E-value=1e-31 Score=337.61 Aligned_cols=285 Identities=14% Similarity=0.094 Sum_probs=209.0
Q ss_pred CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHH-hcCCcEEEecchHHHHHHHHHHHhccccEEEEecCc--c
Q 039491 401 LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALAT-KHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDV--S 477 (1379)
Q Consensus 401 L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l-~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv--~ 477 (1379)
+.|+|+.+++.+.+|++++++||||||||++|.++++..+ ..+.++||++||++|+.|+++.|+. +.++...+.. .
T Consensus 172 ~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~~-~~v~~~~~~l~~~ 250 (618)
T 2whx_A 172 GEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRG-LPIRYQTPAVKSD 250 (618)
T ss_dssp CCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT-SCEEECCTTSSCC
T ss_pred CCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhcC-CceeEecccceec
Confidence 5677777899999999999999999999999988877655 5677999999999999999999974 3565333221 2
Q ss_pred cCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcC-ccceEEEecccCCChHHHHHHH
Q 039491 478 LRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLP-RHINIVLLSATVPNTVEFADWI 556 (1379)
Q Consensus 478 in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp-~~vqiIlLSATvpN~~efa~wl 556 (1379)
..+...+.++|.+.+...+... ..+.++++|||||||++ +..+...+..++..++ ++.|+|+||||+++... .+.
T Consensus 251 ~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~--~~~ 326 (618)
T 2whx_A 251 HTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTD--PFP 326 (618)
T ss_dssp CCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCC--SSC
T ss_pred cCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhh--hhh
Confidence 3455677889999888777655 45889999999999998 6666777777777775 67999999999976532 110
Q ss_pred hhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccc
Q 039491 557 GRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQK 636 (1379)
Q Consensus 557 ~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1379)
. ..+. ++.+... +. ..
T Consensus 327 ~-------------~~~~-----------~~~v~~~--~~-------------------~~------------------- 342 (618)
T 2whx_A 327 Q-------------SNSP-----------IEDIERE--IP-------------------ER------------------- 342 (618)
T ss_dssp C-------------CSSC-----------EEEEECC--CC-------------------SS-------------------
T ss_pred c-------------cCCc-----------eeeeccc--CC-------------------HH-------------------
Confidence 0 0000 0000000 00 00
Q ss_pred cCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhh
Q 039491 637 REHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEK 716 (1379)
Q Consensus 637 ~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek 716 (1379)
. .. .++..+.+. ..++||||+|++.|+.++..|...++.
T Consensus 343 -------------~------------------~~----~ll~~l~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~----- 381 (618)
T 2whx_A 343 -------------S------------------WN----TGFDWITDY-QGKTVWFVPSIKAGNDIANCLRKSGKR----- 381 (618)
T ss_dssp -------------C------------------CS----SSCHHHHHC-CSCEEEECSSHHHHHHHHHHHHHTTCC-----
T ss_pred -------------H------------------HH----HHHHHHHhC-CCCEEEEECChhHHHHHHHHHHHcCCc-----
Confidence 0 00 011122222 469999999999999999999875433
Q ss_pred hHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEE
Q 039491 717 SEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVV 796 (1379)
Q Consensus 717 ~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvV 796 (1379)
+..+||. +|+.++..|++|.++|||||+++++|||+| +++|
T Consensus 382 ----------------------------------v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~V 422 (618)
T 2whx_A 382 ----------------------------------VIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRV 422 (618)
T ss_dssp ----------------------------------EEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEE
T ss_pred ----------------------------------EEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEE
Confidence 5668884 788899999999999999999999999999 6666
Q ss_pred Ecccc----------------ccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEec
Q 039491 797 FDNLR----------------KFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCR 839 (1379)
Q Consensus 797 I~~~~----------------kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~ 839 (1379)
|+... .||. |.+..+|+||+|||||.|.. .|.+|+++.
T Consensus 423 Id~g~~~~P~~~~~~~~~~~i~~d~----P~s~~~yiQR~GRaGR~g~~-~G~ai~l~~ 476 (618)
T 2whx_A 423 IDPRRCLKPVILTDGPERVILAGPI----PVTPASAAQRRGRIGRNPAQ-EDDQYVFSG 476 (618)
T ss_dssp EECCEEEEEEEECSSSCEEEEEEEE----ECCHHHHHHHHTTSSCCTTC-CCEEEEECS
T ss_pred EECcceecceecccCCCceEEcccc----cCCHHHHHHhccccCCCCCC-CCeEEEEcc
Confidence 43211 1444 78999999999999999752 488999986
No 44
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.97 E-value=1.3e-31 Score=334.96 Aligned_cols=280 Identities=20% Similarity=0.164 Sum_probs=205.6
Q ss_pred CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc--cEEEEecCccc
Q 039491 401 LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF--DVGLLTGDVSL 478 (1379)
Q Consensus 401 L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f--~VglltGdv~i 478 (1379)
+.++|++++..+.++++++++||||||||.+|.++++. ++.+++|++||++|+.|+++.+.+.+ .++..+|+...
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~---~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~~ 294 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA---QGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRTI 294 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH---TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEE
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH---CCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEec
Confidence 45677777788888999999999999999988777654 57799999999999999999998877 89999999888
Q ss_pred CCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccce--EEEecccCCChHHHHHHH
Q 039491 479 RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHIN--IVLLSATVPNTVEFADWI 556 (1379)
Q Consensus 479 n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vq--iIlLSATvpN~~efa~wl 556 (1379)
....+|+|+||++| +.+....++++++|||||||++. .++...+..++..++...+ +++||||+++...
T Consensus 295 ~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l~-~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~i~----- 365 (666)
T 3o8b_A 295 TTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHSTD-STTILGIGTVLDQAETAGARLVVLATATPPGSVT----- 365 (666)
T ss_dssp CCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCCS-HHHHHHHHHHHHHTTTTTCSEEEEEESSCTTCCC-----
T ss_pred cCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhcC-ccHHHHHHHHHHhhhhcCCceEEEECCCCCcccc-----
Confidence 88999999999998 44556678889999999998764 4556667778888876555 7888999987311
Q ss_pred hhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccc
Q 039491 557 GRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQK 636 (1379)
Q Consensus 557 ~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1379)
...|. +......... ...+..
T Consensus 366 -------------~~~p~-i~~v~~~~~~------~i~~~~--------------------------------------- 386 (666)
T 3o8b_A 366 -------------VPHPN-IEEVALSNTG------EIPFYG--------------------------------------- 386 (666)
T ss_dssp -------------CCCTT-EEEEECBSCS------SEEETT---------------------------------------
T ss_pred -------------cCCcc-eEEEeecccc------hhHHHH---------------------------------------
Confidence 01111 0000000000 000000
Q ss_pred cCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhh
Q 039491 637 REHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEK 716 (1379)
Q Consensus 637 ~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek 716 (1379)
+ ... +......++||||++++.|+.+++.|...++.
T Consensus 387 -------------~------------------~~~--------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~----- 422 (666)
T 3o8b_A 387 -------------K------------------AIP--------IEAIRGGRHLIFCHSKKKCDELAAKLSGLGIN----- 422 (666)
T ss_dssp -------------E------------------EEC--------GGGSSSSEEEEECSCHHHHHHHHHHHHTTTCC-----
T ss_pred -------------h------------------hhh--------hhhccCCcEEEEeCCHHHHHHHHHHHHhCCCc-----
Confidence 0 000 01123578999999999999999999875433
Q ss_pred hHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEE
Q 039491 717 SEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVV 796 (1379)
Q Consensus 717 ~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvV 796 (1379)
+..+||+|++.+ |+++..+|||||+++++|||+| +++|
T Consensus 423 ----------------------------------v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~V 460 (666)
T 3o8b_A 423 ----------------------------------AVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSV 460 (666)
T ss_dssp ----------------------------------EEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEE
T ss_pred ----------------------------------EEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEE
Confidence 667999999875 5667779999999999999998 8777
Q ss_pred Eccc------cccC--Cc-----ccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCC
Q 039491 797 FDNL------RKFD--GR-----EFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 797 I~~~------~kfD--g~-----~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~ 841 (1379)
|+.- -.|| +. ...|.+..+|+||+||||| |.. |. |.++.+.
T Consensus 461 I~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~--G~-i~lvt~~ 514 (666)
T 3o8b_A 461 IDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRR--GI-YRFVTPG 514 (666)
T ss_dssp EECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSC--EE-EEESCCC
T ss_pred EecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCC--CE-EEEEecc
Confidence 7311 1155 10 0138899999999999999 754 88 7777654
No 45
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.97 E-value=6.9e-31 Score=330.69 Aligned_cols=349 Identities=15% Similarity=0.132 Sum_probs=233.2
Q ss_pred ccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-----cE
Q 039491 395 LDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-----DV 469 (1379)
Q Consensus 395 ~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-----~V 469 (1379)
+.++|.|+++|..+++.+.+|+ ++.|+||+|||++|.+|++.....+..+++++||++||.|.++.+...+ +|
T Consensus 78 r~lG~~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v 155 (844)
T 1tf5_A 78 RVTGMFPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTV 155 (844)
T ss_dssp HHHSCCCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHcCCCCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeE
Confidence 3478899999999999999998 9999999999999999998554567889999999999999988887765 89
Q ss_pred EEEecCcccCC-----CCceeeecHHHH-HHHHhc------CcccCCCccEEEEeccCCCC-Cccc--------------
Q 039491 470 GLLTGDVSLRP-----EASCLIMTTEIL-RSMLYR------GADIIRDIEWVIFDEVHYVN-DIER-------------- 522 (1379)
Q Consensus 470 glltGdv~in~-----~a~IlV~TpEiL-~smL~~------~~~~l~~v~lVI~DEaH~l~-d~~r-------------- 522 (1379)
+++.|+.+... .++|+|+||+.| .++|.. +...++.+.++|+||||.|. |..|
T Consensus 156 ~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~ 235 (844)
T 1tf5_A 156 GLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTK 235 (844)
T ss_dssp EECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCH
T ss_pred EEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchh
Confidence 99999876422 379999999999 555443 23457899999999999987 6543
Q ss_pred -hhHHHHHHHHcC---------ccceEE-----------------EecccCCChHHHHHHHhhh-------cCCcEEEEc
Q 039491 523 -GVVWEEVIIMLP---------RHINIV-----------------LLSATVPNTVEFADWIGRT-------KQKKIRVTG 568 (1379)
Q Consensus 523 -G~v~eeii~~Lp---------~~vqiI-----------------lLSATvpN~~efa~wl~~~-------~~~~i~vi~ 568 (1379)
...+..++..++ +..|++ ++|||.+. +..|+... ..+.-|++.
T Consensus 236 ~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~---~~~~i~~al~A~~l~~~d~dYiv~ 312 (844)
T 1tf5_A 236 LYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVA---LNHHINQALKAHVAMQKDVDYVVE 312 (844)
T ss_dssp HHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHH---HHHHHHHHHHHHHTCCBTTTEEEE
T ss_pred HHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccch---hHHHHHHHHHHHHHhhcCCceEEe
Confidence 345666777786 356777 89999653 22233210 011112211
Q ss_pred -------c--CCCC-------------------cCce---EE---Ee----e---cC--ceeeeccCcccchhhHHHHHH
Q 039491 569 -------T--TKRP-------------------VPLE---HC---LY----Y---SG--EFYKVCENEAFIPQGWKAAKD 605 (1379)
Q Consensus 569 -------t--~~Rp-------------------vpLe---~~---l~----~---~~--~l~~i~d~~~f~~~~~~~~~~ 605 (1379)
. ..|. +.+. .- +. . .. .+.--.... ...+..
T Consensus 313 dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te---~~e~~~--- 386 (844)
T 1tf5_A 313 DGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTE---EEEFRN--- 386 (844)
T ss_dssp TTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGG---HHHHHH---
T ss_pred cCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchh---HHHHHH---
Confidence 0 1111 1110 00 00 0 00 010000000 001110
Q ss_pred HHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHh--C
Q 039491 606 AYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSK--K 683 (1379)
Q Consensus 606 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~--~ 683 (1379)
.+.- .... .+......+. ... .-.......++..++..+.. .
T Consensus 387 iY~l----~vv~----IPtn~p~~r~------------d~~----------------d~v~~~~~~K~~al~~~i~~~~~ 430 (844)
T 1tf5_A 387 IYNM----QVVT----IPTNRPVVRD------------DRP----------------DLIYRTMEGKFKAVAEDVAQRYM 430 (844)
T ss_dssp HHCC----CEEE----CCCSSCCCCE------------ECC----------------CEEESSHHHHHHHHHHHHHHHHH
T ss_pred HhCC----ceEE----ecCCCCcccc------------cCC----------------cEEEeCHHHHHHHHHHHHHHHHh
Confidence 0000 0000 0000000000 000 00001134456666665543 2
Q ss_pred CCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHH
Q 039491 684 SLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVK 763 (1379)
Q Consensus 684 ~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~R 763 (1379)
.+.|+||||.|+..|+.++..|...|+.. .++||++...+|
T Consensus 431 ~~~pvLVft~s~~~se~Ls~~L~~~gi~~---------------------------------------~vLhg~~~~rEr 471 (844)
T 1tf5_A 431 TGQPVLVGTVAVETSELISKLLKNKGIPH---------------------------------------QVLNAKNHEREA 471 (844)
T ss_dssp HTCCEEEEESCHHHHHHHHHHHHTTTCCC---------------------------------------EEECSSCHHHHH
T ss_pred cCCcEEEEECCHHHHHHHHHHHHHCCCCE---------------------------------------EEeeCCccHHHH
Confidence 35799999999999999999999877764 359999988888
Q ss_pred HHHHHHhcCCCeeEEEecccccccCCCC--------CceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEE
Q 039491 764 EVIEMLFCRGVVKVLFSTETFAMGVNAP--------ARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVV 835 (1379)
Q Consensus 764 e~Ve~lF~~G~ikVLVATetla~GINiP--------a~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vI 835 (1379)
+.+...|+.| .|+|||++++||+|++ +..+||+ ||. |.+...|+||+||+||.|.. |.++
T Consensus 472 ~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn----~d~----p~s~r~y~hr~GRTGRqG~~--G~s~ 539 (844)
T 1tf5_A 472 QIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVG----TER----HESRRIDNQLRGRSGRQGDP--GITQ 539 (844)
T ss_dssp HHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEE----SSC----CSSHHHHHHHHTTSSGGGCC--EEEE
T ss_pred HHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEE----ecC----CCCHHHHHhhcCccccCCCC--CeEE
Confidence 8787777776 6999999999999999 7889999 888 99999999999999999975 9998
Q ss_pred EEecCC
Q 039491 836 VLCRDE 841 (1379)
Q Consensus 836 il~~~~ 841 (1379)
++++.+
T Consensus 540 ~~vs~e 545 (844)
T 1tf5_A 540 FYLSME 545 (844)
T ss_dssp EEEETT
T ss_pred EEecHH
Confidence 888754
No 46
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.97 E-value=1.2e-30 Score=315.58 Aligned_cols=270 Identities=17% Similarity=0.166 Sum_probs=187.5
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHH-HHHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcc--cCCCCceeeecHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFA-LATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVS--LRPEASCLIMTTE 490 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~-~~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~--in~~a~IlV~TpE 490 (1379)
+|++++++||||||||++|+.+++ .++.++.+++|++||++|+.|+++.|.. +.+++.+|... ..+..-+.++|.+
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALRG-EPIRYMTPAVQSERTGNEIVDFMCHS 79 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT-SCEEEC---------CCCSEEEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhCC-CeEEEEecCccccCCCCceEEEEchH
Confidence 478999999999999999988887 5667888999999999999999998873 37888877643 2345667788999
Q ss_pred HHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHH-cCccceEEEecccCCChHHHHHHHhhhcCCcEEEEcc
Q 039491 491 ILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIM-LPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGT 569 (1379)
Q Consensus 491 iL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~-Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t 569 (1379)
.+...+.. ...+.++++||+||+|++. .........+... .+..+++++||||+++... ..
T Consensus 80 ~l~~~l~~-~~~~~~l~~vViDEaH~~~-~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~------~~---------- 141 (431)
T 2v6i_A 80 TFTMKLLQ-GVRVPNYNLYIMDEAHFLD-PASVAARGYIETRVSMGDAGAIFMTATPPGTTE------AF---------- 141 (431)
T ss_dssp HHHHHHHH-TCCCCCCSEEEEESTTCCS-HHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCC------SS----------
T ss_pred HHHHHHhc-CccccCCCEEEEeCCccCC-ccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchh------hh----------
Confidence 88776666 4568899999999999973 2222222222222 2567999999999876211 00
Q ss_pred CCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCcc
Q 039491 570 TKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHS 649 (1379)
Q Consensus 570 ~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~ 649 (1379)
.....|+.... .. ....
T Consensus 142 ~~~~~~i~~~~--~~-----~~~~-------------------------------------------------------- 158 (431)
T 2v6i_A 142 PPSNSPIIDEE--TR-----IPDK-------------------------------------------------------- 158 (431)
T ss_dssp CCCSSCCEEEE--CC-----CCSS--------------------------------------------------------
T ss_pred cCCCCceeecc--cc-----CCHH--------------------------------------------------------
Confidence 00011111000 00 0000
Q ss_pred ccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhh
Q 039491 650 VVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSR 729 (1379)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~ 729 (1379)
. +..++..+... ..++||||++++.|+.++..|...++
T Consensus 159 ~----------------------~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~------------------- 196 (431)
T 2v6i_A 159 A----------------------WNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGK------------------- 196 (431)
T ss_dssp C----------------------CSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTC-------------------
T ss_pred H----------------------HHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCC-------------------
Confidence 0 00011223333 46899999999999999999876432
Q ss_pred ccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceE--------------
Q 039491 730 LKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTV-------------- 795 (1379)
Q Consensus 730 L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tv-------------- 795 (1379)
.++.+||+ +|+.++..|++|.++|||||+++++|||+|..+|
T Consensus 197 --------------------~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip~~~VI~~g~~~~~v~d~~ 252 (431)
T 2v6i_A 197 --------------------KVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFKADRVIDPRKTIKPILLDG 252 (431)
T ss_dssp --------------------CEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCCCSEEEECCEEEEEEEETT
T ss_pred --------------------eEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccCCcEEEecCccccceeccc
Confidence 27789997 6888999999999999999999999999995444
Q ss_pred --EEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecC
Q 039491 796 --VFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRD 840 (1379)
Q Consensus 796 --VI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~ 840 (1379)
||+ |+. |.+..+|+||+|||||.|.. .|.++++..+
T Consensus 253 ~~vi~----~~~----p~~~~~~~Qr~GR~GR~g~~-~~~~~~~~~~ 290 (431)
T 2v6i_A 253 RVSMQ----GPI----AITPASAAQRRGRIGRNPEK-LGDIYAYSGN 290 (431)
T ss_dssp EEEEE----EEE----ECCHHHHHHHHTTSSCCTTC-CCCEEEECSC
T ss_pred ceeec----ccc----cCCHHHHHHhhhccCCCCCC-CCeEEEEcCC
Confidence 233 455 78999999999999999854 3556666543
No 47
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.97 E-value=6.2e-30 Score=320.84 Aligned_cols=339 Identities=15% Similarity=0.143 Sum_probs=195.5
Q ss_pred CCCCCHHHHHHHHHHHC-----CCcEEEEcCCCccHHHHHHHHHHHHHh---------cCCcEEEecchHHHHHHHH-HH
Q 039491 398 PFELDNFQKEAIYYLEN-----GDSVFVAAHTSAGKTVVAEYAFALATK---------HCTRAVYTAPIKTISNQKY-RD 462 (1379)
Q Consensus 398 pFeL~~~Q~eAI~~L~~-----g~sVlV~ApTGSGKTlvae~aI~~~l~---------~~~raIylsPtkaLsnQk~-~~ 462 (1379)
+++|+++|.+|+..+.. ++++++++|||+|||+++..++...+. .+.++||++|+++|+.|++ +.
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 35799999999998754 467999999999999998777766665 4589999999999999999 77
Q ss_pred Hhccc-cEEEEecCcccCCCCceeeecHHHHHHHHhc----CcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccc
Q 039491 463 FSGKF-DVGLLTGDVSLRPEASCLIMTTEILRSMLYR----GADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHI 537 (1379)
Q Consensus 463 ~~~~f-~VglltGdv~in~~a~IlV~TpEiL~smL~~----~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~v 537 (1379)
|+... .++.++++ ......+|+|+|++.|.+.+.. ......++++||+||||++.... +..|..++..++. .
T Consensus 256 ~~~~~~~~~~~~~~-~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~~~-~ 332 (590)
T 3h1t_A 256 FTPFGDARHKIEGG-KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYFEP-A 332 (590)
T ss_dssp CTTTCSSEEECCC---CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHHHHSTT-S
T ss_pred HHhcchhhhhhhcc-CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHHHHhCCc-c
Confidence 77655 66666544 3456789999999999877542 12235678999999999997542 3567888888874 6
Q ss_pred eEEEecccCCChH--HHHHHHhhhcCCcEEEEcc-----CCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhh
Q 039491 538 NIVLLSATVPNTV--EFADWIGRTKQKKIRVTGT-----TKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRK 610 (1379)
Q Consensus 538 qiIlLSATvpN~~--efa~wl~~~~~~~i~vi~t-----~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~ 610 (1379)
++++||||+.+.. +...+++ .+++.+.. ....+|...+..... .+ ..++......+...
T Consensus 333 ~~l~lTATP~~~~~~~~~~~f~----~~~~~~~~~~~i~~~~l~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~ 398 (590)
T 3h1t_A 333 FQIGMTATPLREDNRDTYRYFG----NPIYTYSLRQGIDDGFLAPYRVHRVISE-----VD-----AAGWRPSKGDVDRF 398 (590)
T ss_dssp EEEEEESSCSCTTTHHHHHHSC----SCSEEECHHHHHHHTSSCCEEEEEEEET-----TC-----C-------------
T ss_pred eEEEeccccccccchhHHHHcC----CceEecCHHHHhhCCccCCcEEEEeeee-----ee-----cccccccccccccc
Confidence 8999999976543 4445554 22222211 011122221111100 00 00000000000000
Q ss_pred ccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHh-CCCCCEE
Q 039491 611 NLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSK-KSLLPVV 689 (1379)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~-~~~~pvI 689 (1379)
. .... ...+ ... ..................+...+.. ....++|
T Consensus 399 ~-~~~~-----------------~~~~----------~~~-------~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~l 443 (590)
T 3h1t_A 399 G-REIP-----------------DGEY----------QTK-------DFERVIALKARTDAFAKHLTDFMKRTDRFAKTI 443 (590)
T ss_dssp --------------------------------------CC-------SHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEE
T ss_pred c-cccc-----------------cccC----------CHH-------HhhhHhcChHHHHHHHHHHHHHHHhcCCCccEE
Confidence 0 0000 0000 000 0000000000011122233333433 3347899
Q ss_pred EEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHH
Q 039491 690 IFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEML 769 (1379)
Q Consensus 690 VFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~l 769 (1379)
|||+++++|+.++..|...+... .......+..+||+++ .+|+.++..
T Consensus 444 VF~~~~~~a~~l~~~L~~~~~~~-------------------------------~~~~~~~~~~i~g~~~-~~r~~~l~~ 491 (590)
T 3h1t_A 444 VFCVDQEHADEMRRALNNLNSDL-------------------------------SRKHPDYVARVTSEEG-KIGKGHLSR 491 (590)
T ss_dssp EEESSHHHHHHHHHHHHHHTHHH-------------------------------HTTCTTSEEECSSTTH-HHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHHhhhhh-------------------------------hccCCCeEEEEeCCCh-HHHHHHHHH
Confidence 99999999999999997632110 0001123677899875 479999999
Q ss_pred hcCCCee---EEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCC
Q 039491 770 FCRGVVK---VLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGL 828 (1379)
Q Consensus 770 F~~G~ik---VLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~ 828 (1379)
|++|..+ ||+||+++++|||+|++++||. |+. +.++..|+||+|||||.|.
T Consensus 492 F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~----~~~----~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 492 FQELETSTPVILTTSQLLTTGVDAPTCKNVVL----ARV----VNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp HHCTTCCCCCEEEESSTTTTTCCCTTEEEEEE----ESC----CCCHHHHHHHHTTSCCCBG
T ss_pred HhCCCCCCCEEEEECChhhcCccchheeEEEE----Eec----CCChHHHHHHHhhhcccCc
Confidence 9998876 8999999999999999999998 888 8899999999999999885
No 48
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.97 E-value=1.9e-30 Score=314.46 Aligned_cols=273 Identities=19% Similarity=0.143 Sum_probs=181.6
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHH-hcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcc--cCCCCceeeec
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALAT-KHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVS--LRPEASCLIMT 488 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l-~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~--in~~a~IlV~T 488 (1379)
+.+|++++++||||||||++|.++++..+ .++.+++|++||++|+.|+++.++.. .++..++... ..+..-+-.++
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~-~v~~~~~~~~~v~Tp~~l~~~l~ 83 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGL-DVKFHTQAFSAHGSGREVIDAMC 83 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS-CEEEESSCCCCCCCSSCCEEEEE
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcC-CeEEecccceeccCCccceeeec
Confidence 56799999999999999999988888755 56779999999999999999999854 5655555432 12333334455
Q ss_pred HHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc-CccceEEEecccCCChH-HHHHHHhhhcCCcEEE
Q 039491 489 TEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML-PRHINIVLLSATVPNTV-EFADWIGRTKQKKIRV 566 (1379)
Q Consensus 489 pEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L-p~~vqiIlLSATvpN~~-efa~wl~~~~~~~i~v 566 (1379)
.+.+...+... ..+.++++||+||||++ +..+......+...+ +.+.|+++||||++... +++.
T Consensus 84 ~~~l~~~~~~~-~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~------------ 149 (440)
T 1yks_A 84 HATLTYRMLEP-TRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSDEFPH------------ 149 (440)
T ss_dssp HHHHHHHHTSS-SCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC------------
T ss_pred ccchhHhhhCc-ccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhh------------
Confidence 55555444332 45789999999999999 433333333333333 46799999999986532 1110
Q ss_pred EccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCC
Q 039491 567 TGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQN 646 (1379)
Q Consensus 567 i~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~ 646 (1379)
.+.|+...-. .+....
T Consensus 150 -----~~~~~~~~~~-------~~~~~~---------------------------------------------------- 165 (440)
T 1yks_A 150 -----SNGEIEDVQT-------DIPSEP---------------------------------------------------- 165 (440)
T ss_dssp -----CSSCEEEEEC-------CCCSSC----------------------------------------------------
T ss_pred -----cCCCeeEeee-------ccChHH----------------------------------------------------
Confidence 0111111000 000000
Q ss_pred CccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHH
Q 039491 647 KHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKA 726 (1379)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~ 726 (1379)
... ++..+.+. ..++||||++++.|+.++..|...++.
T Consensus 166 ----------------------~~~----~~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~~~~--------------- 203 (440)
T 1yks_A 166 ----------------------WNT----GHDWILAD-KRPTAWFLPSIRAANVMAASLRKAGKS--------------- 203 (440)
T ss_dssp ----------------------CSS----SCHHHHHC-CSCEEEECSCHHHHHHHHHHHHHTTCC---------------
T ss_pred ----------------------HHH----HHHHHHhc-CCCEEEEeCCHHHHHHHHHHHHHcCCC---------------
Confidence 000 11122222 479999999999999999999765332
Q ss_pred hhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccc-c----
Q 039491 727 FSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNL-R---- 801 (1379)
Q Consensus 727 ~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~-~---- 801 (1379)
++.+|| .+|+.++..|++|.++|||||+++++|||+| +++||+.. .
T Consensus 204 ------------------------v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv 254 (440)
T 1yks_A 204 ------------------------VVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPV 254 (440)
T ss_dssp ------------------------EEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEE
T ss_pred ------------------------EEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceee
Confidence 678999 4688999999999999999999999999999 88887511 0
Q ss_pred ----------ccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEec
Q 039491 802 ----------KFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCR 839 (1379)
Q Consensus 802 ----------kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~ 839 (1379)
.|+. |.+..+|+||+|||||.|. ..|.||+++.
T Consensus 255 ~~~~~~~~vi~~~~----p~~~~~~~Qr~GR~GR~g~-~~g~~~~l~~ 297 (440)
T 1yks_A 255 LVDEGRKVAIKGPL----RISASSAAQRRGRIGRNPN-RDGDSYYYSE 297 (440)
T ss_dssp EETTTTEEEEEEEE----ECCHHHHHHHHTTSSCCTT-CCCEEEEECS
T ss_pred ecccccceeecccc----ccCHHHHHHhccccCCCCC-CCceEEEEec
Confidence 1444 8899999999999999842 2499999963
No 49
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.97 E-value=8.9e-31 Score=331.19 Aligned_cols=285 Identities=16% Similarity=0.135 Sum_probs=198.7
Q ss_pred CCCHHHH-----HHHHHHH------CCCcEEEEcCCCccHHHHHHHHHHHH-HhcCCcEEEecchHHHHHHHHHHHhccc
Q 039491 400 ELDNFQK-----EAIYYLE------NGDSVFVAAHTSAGKTVVAEYAFALA-TKHCTRAVYTAPIKTISNQKYRDFSGKF 467 (1379)
Q Consensus 400 eL~~~Q~-----eAI~~L~------~g~sVlV~ApTGSGKTlvae~aI~~~-l~~~~raIylsPtkaLsnQk~~~~~~~f 467 (1379)
.|+++|+ ++|+.+. +|++++++||||||||++|.++++.. ..++.+++|++||++|+.|+++.++..
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~- 293 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGL- 293 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS-
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcC-
Confidence 4788899 9998877 89999999999999999998888876 466789999999999999999999864
Q ss_pred cEEEEecCcc--cCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHc-CccceEEEecc
Q 039491 468 DVGLLTGDVS--LRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML-PRHINIVLLSA 544 (1379)
Q Consensus 468 ~VglltGdv~--in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L-p~~vqiIlLSA 544 (1379)
.++..++... ..+..-+-+++.+.+...+... ..++++++||+||||++ +.........+...+ +...|+++|||
T Consensus 294 ~i~~~~~~l~~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SA 371 (673)
T 2wv9_A 294 PVRYLTPAVQREHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMTA 371 (673)
T ss_dssp CCEECCC---CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEECS
T ss_pred CeeeecccccccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEcC
Confidence 4444333322 1234445567777776555543 46889999999999998 222222333333333 36799999999
Q ss_pred cCCChHHHHHHHhhhcCCcEEEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCC
Q 039491 545 TVPNTVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAG 624 (1379)
Q Consensus 545 TvpN~~efa~wl~~~~~~~i~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 624 (1379)
|++.... .. .....|+...... .....
T Consensus 372 T~~~~i~------~~----------~~~~~~i~~v~~~-------~~~~~------------------------------ 398 (673)
T 2wv9_A 372 TPPGTSD------PF----------PDTNSPVHDVSSE-------IPDRA------------------------------ 398 (673)
T ss_dssp SCTTCCC------SS----------CCCSSCEEEEECC-------CCSSC------------------------------
T ss_pred CCChhhh------hh----------cccCCceEEEeee-------cCHHH------------------------------
Confidence 9874311 00 0011122111000 00000
Q ss_pred CCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHH
Q 039491 625 ASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADG 704 (1379)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~ 704 (1379)
.. .++..+.+ ...++||||++++.|+.++..
T Consensus 399 --------------------------------------------~~----~~l~~l~~-~~~~~lVF~~s~~~~e~la~~ 429 (673)
T 2wv9_A 399 --------------------------------------------WS----SGFEWITD-YAGKTVWFVASVKMSNEIAQC 429 (673)
T ss_dssp --------------------------------------------CS----SCCHHHHS-CCSCEEEECSSHHHHHHHHHH
T ss_pred --------------------------------------------HH----HHHHHHHh-CCCCEEEEECCHHHHHHHHHH
Confidence 00 01112222 357999999999999999999
Q ss_pred hhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccc
Q 039491 705 MSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETF 784 (1379)
Q Consensus 705 L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetl 784 (1379)
|...++. ++.+||. +|+.++..|++|.++|||||+++
T Consensus 430 L~~~g~~---------------------------------------v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~ 466 (673)
T 2wv9_A 430 LQRAGKR---------------------------------------VIQLNRK----SYDTEYPKCKNGDWDFVITTDIS 466 (673)
T ss_dssp HHTTTCC---------------------------------------EEEECSS----SHHHHGGGGGTCCCSEEEECGGG
T ss_pred HHhCCCe---------------------------------------EEEeChH----HHHHHHHHHHCCCceEEEECchh
Confidence 9775332 6779993 89999999999999999999999
Q ss_pred cccCCCCCceEEEcccc----------------ccCCcccccCCHHHHHHHhcccCCC-CCCCcEEEEEEec
Q 039491 785 AMGVNAPARTVVFDNLR----------------KFDGREFRQLLPGEYTQMAGRAGRR-GLDKIGTVVVLCR 839 (1379)
Q Consensus 785 a~GINiPa~tvVI~~~~----------------kfDg~~~rpls~~eyiQmaGRAGRr-G~d~~G~vIil~~ 839 (1379)
++|||+| +++||+... .||. |.++.+|+||+|||||. |. .|.||+++.
T Consensus 467 e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~----P~s~~~y~Qr~GRaGR~~g~--~G~ai~l~~ 531 (673)
T 2wv9_A 467 EMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPS----AITSASAAQRRGRVGRNPSQ--IGDEYHYGG 531 (673)
T ss_dssp GTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSE----ECCHHHHHHHHTTSSCCSSC--CCEEEEECS
T ss_pred hcceeeC-CcEEEECCCcccceeeecccccceecccC----CCCHHHHHHHhhccCCCCCC--CCEEEEEEe
Confidence 9999999 888886211 0334 88999999999999999 54 489999863
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.97 E-value=8.1e-31 Score=319.40 Aligned_cols=279 Identities=15% Similarity=0.141 Sum_probs=189.9
Q ss_pred HHHHHCCCcEEEEcCCCccHHHHHHHHHHHHH-hcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcc--cCCCCcee
Q 039491 409 IYYLENGDSVFVAAHTSAGKTVVAEYAFALAT-KHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVS--LRPEASCL 485 (1379)
Q Consensus 409 I~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l-~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~--in~~a~Il 485 (1379)
...+.+|++++++||||||||++|.++++..+ ..+.++||++|+++|++|+++.++.. .++..++... ..+..-+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~-~v~~~~~~~~~~~t~~~~i~ 93 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGL-PVRYQTSAVQREHQGNEIVD 93 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTS-CEEECC--------CCCSEE
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCc-eEeEEecccccCCCCCcEEE
Confidence 44467889999999999999999988887655 57889999999999999999999843 4444333322 13455677
Q ss_pred eecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHH-cCccceEEEecccCCChHHHHHHHhhhcCCcE
Q 039491 486 IMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIM-LPRHINIVLLSATVPNTVEFADWIGRTKQKKI 564 (1379)
Q Consensus 486 V~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~-Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i 564 (1379)
++|.+.+...+... ..++++++||+||||++. ......+..+... .++..|+|+||||++.... .+.
T Consensus 94 ~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~-~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~~~--~~~-------- 161 (459)
T 2z83_A 94 VMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTD-PASIAARGYIATKVELGEAAAIFMTATPPGTTD--PFP-------- 161 (459)
T ss_dssp EEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCS-HHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCC--SSC--------
T ss_pred EEchHHHHHHhhcc-ccccCCcEEEEECCccCC-chhhHHHHHHHHHhccCCccEEEEEcCCCcchh--hhc--------
Confidence 89999988777654 458899999999999852 1222222222222 2467999999999975321 000
Q ss_pred EEEccCCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCC
Q 039491 565 RVTGTTKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGK 644 (1379)
Q Consensus 565 ~vi~t~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr 644 (1379)
....|+.... . ......+
T Consensus 162 ------~~~~pi~~~~---~----~~~~~~~------------------------------------------------- 179 (459)
T 2z83_A 162 ------DSNAPIHDLQ---D----EIPDRAW------------------------------------------------- 179 (459)
T ss_dssp ------CCSSCEEEEE---C----CCCSSCC-------------------------------------------------
T ss_pred ------cCCCCeEEec---c----cCCcchh-------------------------------------------------
Confidence 0011111100 0 0000000
Q ss_pred CCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHH
Q 039491 645 QNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCD 724 (1379)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~ 724 (1379)
. .++..+... ..++||||+|++.|+.++..|...++.
T Consensus 180 -------------------------~----~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~g~~------------- 216 (459)
T 2z83_A 180 -------------------------S----SGYEWITEY-AGKTVWFVASVKMGNEIAMCLQRAGKK------------- 216 (459)
T ss_dssp -------------------------S----SCCHHHHHC-CSCEEEECSCHHHHHHHHHHHHHTTCC-------------
T ss_pred -------------------------H----HHHHHHHhc-CCCEEEEeCChHHHHHHHHHHHhcCCc-------------
Confidence 0 001112222 479999999999999999999775433
Q ss_pred HHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccc----
Q 039491 725 KAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNL---- 800 (1379)
Q Consensus 725 ~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~---- 800 (1379)
+..+||. +|+.++..|++|.++|||||+++++|||+|+ ++||+..
T Consensus 217 --------------------------v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~ 265 (459)
T 2z83_A 217 --------------------------VIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVK 265 (459)
T ss_dssp --------------------------EEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECC
T ss_pred --------------------------EEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccc
Confidence 4568884 7888999999999999999999999999999 8887621
Q ss_pred --------cc----cCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCC
Q 039491 801 --------RK----FDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 801 --------~k----fDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~ 841 (1379)
.. ||. |.++.+|+||+|||||.|.. .|.+++++...
T Consensus 266 ~~~~~~~~~~~~~~~d~----p~s~~~~~QR~GRaGR~g~~-~G~~~~~~~~~ 313 (459)
T 2z83_A 266 PTILEEGEGRVILGNPS----PITSASAAQRRGRVGRNPNQ-VGDEYHYGGAT 313 (459)
T ss_dssp EEEECSSSCEEEECSCE----ECCHHHHHHHHTTSSCCTTC-CCEEEEECSCC
T ss_pred cccccccccccccccCC----CCCHHHHHHhccccCCCCCC-CCeEEEEEccc
Confidence 00 334 88999999999999999962 48888888764
No 51
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.97 E-value=2.6e-29 Score=315.53 Aligned_cols=351 Identities=13% Similarity=0.079 Sum_probs=215.7
Q ss_pred cCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-----cEE
Q 039491 396 DFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-----DVG 470 (1379)
Q Consensus 396 ~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-----~Vg 470 (1379)
.++..|+++|..+++.+.+|+ ++.|+||+|||++|.+|++.....+..+++++||++||.|.+..+...+ +|+
T Consensus 70 ~lg~~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~ 147 (853)
T 2fsf_A 70 VFGMRHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVG 147 (853)
T ss_dssp HHSCCCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HcCCCCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEE
Confidence 467788999999999999997 9999999999999999998665668899999999999999998888765 799
Q ss_pred EEecCcccC-----CCCceeeecHHHH-HHHHhcC------cccCCCccEEEEeccCCCC-Cccc---------------
Q 039491 471 LLTGDVSLR-----PEASCLIMTTEIL-RSMLYRG------ADIIRDIEWVIFDEVHYVN-DIER--------------- 522 (1379)
Q Consensus 471 lltGdv~in-----~~a~IlV~TpEiL-~smL~~~------~~~l~~v~lVI~DEaH~l~-d~~r--------------- 522 (1379)
+++|+.+.. ..++|+|+||+.| .++|..+ ...++++.++|+||||.|. |..+
T Consensus 148 ~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~ 227 (853)
T 2fsf_A 148 INLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEM 227 (853)
T ss_dssp ECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC-------
T ss_pred EEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhH
Confidence 999987642 1379999999999 6777654 2457899999999999988 5432
Q ss_pred hhHHHHHHHHcCc--------------------cceEE------------------------EecccCCChHHHHHHHhh
Q 039491 523 GVVWEEVIIMLPR--------------------HINIV------------------------LLSATVPNTVEFADWIGR 558 (1379)
Q Consensus 523 G~v~eeii~~Lp~--------------------~vqiI------------------------lLSATvpN~~efa~wl~~ 558 (1379)
...+..++..+|+ ..|++ ++|||.+... .|+..
T Consensus 228 y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~---~~i~~ 304 (853)
T 2fsf_A 228 YKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLM---HHVTA 304 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHH---HHHHH
Confidence 2345566666764 34543 7899865311 11110
Q ss_pred h-------cCCcEEEEcc---------CCCC-------------------cCc----------e--EEEeecCceeeecc
Q 039491 559 T-------KQKKIRVTGT---------TKRP-------------------VPL----------E--HCLYYSGEFYKVCE 591 (1379)
Q Consensus 559 ~-------~~~~i~vi~t---------~~Rp-------------------vpL----------e--~~l~~~~~l~~i~d 591 (1379)
. +.+.-|++.. ..|. +.+ . .|+-...++.-+..
T Consensus 305 al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTG 384 (853)
T 2fsf_A 305 ALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTG 384 (853)
T ss_dssp ----------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEEC
T ss_pred HHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCC
Confidence 0 0000011000 0000 000 0 00000012222322
Q ss_pred CcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhH
Q 039491 592 NEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVS 671 (1379)
Q Consensus 592 ~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1379)
.-.-....|.... .- +... .+......+. ... .-.......
T Consensus 385 Ta~te~~ef~~iY---~l----~vv~----IPtn~p~~R~------------d~~----------------d~v~~~~~~ 425 (853)
T 2fsf_A 385 TADTEAFEFSSIY---KL----DTVV----VPTNRPMIRK------------DLP----------------DLVYMTEAE 425 (853)
T ss_dssp TTCCCHHHHHHHH---CC----EEEE----CCCSSCCCCE------------ECC----------------CEEESSHHH
T ss_pred CchhHHHHHHHHh---CC----cEEE----cCCCCCceee------------cCC----------------cEEEeCHHH
Confidence 0000001111110 00 0000 0000000000 000 000112355
Q ss_pred HHHHHHHHHHh--CCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhcc
Q 039491 672 IWLTLINKLSK--KSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRR 749 (1379)
Q Consensus 672 ~~~~Li~~L~~--~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~r 749 (1379)
++..++..+.. ..+.|+||||.|+..++.++..|...++..
T Consensus 426 K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~------------------------------------- 468 (853)
T 2fsf_A 426 KIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKH------------------------------------- 468 (853)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCC-------------------------------------
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCE-------------------------------------
Confidence 66677776643 346799999999999999999999877764
Q ss_pred ceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCc------------------------------------
Q 039491 750 GIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPAR------------------------------------ 793 (1379)
Q Consensus 750 GIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~------------------------------------ 793 (1379)
.++||++...+++.|...|+.| .|+|||++++||+|++..
T Consensus 469 --~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 544 (853)
T 2fsf_A 469 --NVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAG 544 (853)
T ss_dssp --EECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred --EEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcC
Confidence 3699999999999999999999 699999999999999973
Q ss_pred -eEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCC
Q 039491 794 -TVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 794 -tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~ 841 (1379)
.+||+ |+. |.+...|.||+||+||.|.. |.++++++.+
T Consensus 545 Gl~VI~----te~----pes~riy~qr~GRTGRqGd~--G~s~~fls~e 583 (853)
T 2fsf_A 545 GLHIIG----TER----HESRRIDNQLRGRSGRQGDA--GSSRFYLSME 583 (853)
T ss_dssp SEEEEE----SSC----CSSHHHHHHHHTTSSGGGCC--EEEEEEEETT
T ss_pred CcEEEE----ccC----CCCHHHHHhhccccccCCCC--eeEEEEeccc
Confidence 68999 877 89999999999999999975 9998888654
No 52
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.96 E-value=1.2e-28 Score=309.59 Aligned_cols=355 Identities=14% Similarity=0.100 Sum_probs=238.6
Q ss_pred ccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-----cE
Q 039491 395 LDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-----DV 469 (1379)
Q Consensus 395 ~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-----~V 469 (1379)
+.+++.|+++|..+++.+.+|+ ++.|+||+|||++|.+|++.....+..+++++||++||.|.+..+...+ +|
T Consensus 106 R~lG~rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv 183 (922)
T 1nkt_A 106 RVLDQRPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQV 183 (922)
T ss_dssp HHHSCCCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHcCCCCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeE
Confidence 4578899999999999999997 9999999999999999997655567889999999999999888887765 89
Q ss_pred EEEecCcccC-----CCCceeeecHHHH-HHHHhcC------cccCCCccEEEEeccCCCC-Ccc---------------
Q 039491 470 GLLTGDVSLR-----PEASCLIMTTEIL-RSMLYRG------ADIIRDIEWVIFDEVHYVN-DIE--------------- 521 (1379)
Q Consensus 470 glltGdv~in-----~~a~IlV~TpEiL-~smL~~~------~~~l~~v~lVI~DEaH~l~-d~~--------------- 521 (1379)
++++|+.+.. ..++|+|+||+.| .++|..+ ...++.+.++|+||||.|. |..
T Consensus 184 ~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~ 263 (922)
T 1nkt_A 184 GVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASN 263 (922)
T ss_dssp EECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHH
T ss_pred EEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchh
Confidence 9999987632 1379999999998 6666543 3567899999999999987 542
Q ss_pred chhHHHHHHHHcC---------ccceEE-----------------EecccCCChH-HHHHHHhh---hcCCcEEEEc---
Q 039491 522 RGVVWEEVIIMLP---------RHINIV-----------------LLSATVPNTV-EFADWIGR---TKQKKIRVTG--- 568 (1379)
Q Consensus 522 rG~v~eeii~~Lp---------~~vqiI-----------------lLSATvpN~~-efa~wl~~---~~~~~i~vi~--- 568 (1379)
+...+..++..|+ +..|++ ++|||.+... .+...+.. .+.+.-|++.
T Consensus 264 ~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~ 343 (922)
T 1nkt_A 264 WYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGE 343 (922)
T ss_dssp HHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSC
T ss_pred HHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCc
Confidence 3355677888887 678888 8999987532 22111111 0111112211
Q ss_pred ----c--CCCC-------------------cCce---EEE--------e-ecCceeeeccCcccchhhHHHHHHHHHhhc
Q 039491 569 ----T--TKRP-------------------VPLE---HCL--------Y-YSGEFYKVCENEAFIPQGWKAAKDAYKRKN 611 (1379)
Q Consensus 569 ----t--~~Rp-------------------vpLe---~~l--------~-~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~ 611 (1379)
. ..|. +.++ .-+ + ...++.-+...-.-....|.... .
T Consensus 344 vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY----~-- 417 (922)
T 1nkt_A 344 VLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIY----K-- 417 (922)
T ss_dssp EEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHH----C--
T ss_pred eEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHh----C--
Confidence 1 1111 1110 000 0 00122223220000001111110 0
Q ss_pred cccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHh--CCCCCEE
Q 039491 612 LSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSK--KSLLPVV 689 (1379)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~--~~~~pvI 689 (1379)
..... .+......+. ... .-.......++..++..+.. ..+.|+|
T Consensus 418 -l~vv~----IPtn~p~~R~------------d~~----------------d~v~~t~~~K~~al~~~i~~~~~~gqpvL 464 (922)
T 1nkt_A 418 -LGVVS----IPTNMPMIRE------------DQS----------------DLIYKTEEAKYIAVVDDVAERYAKGQPVL 464 (922)
T ss_dssp -CEEEE----CCCSSCCCCE------------ECC----------------CEEESCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred -CCeEE----eCCCCCcccc------------cCC----------------cEEEeCHHHHHHHHHHHHHHHHhcCCcEE
Confidence 00000 0000000000 000 00011234556666666643 2457999
Q ss_pred EEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHH
Q 039491 690 IFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEML 769 (1379)
Q Consensus 690 VFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~l 769 (1379)
|||.|+..|+.++..|...++.. .++||++...+++.|...
T Consensus 465 Vft~Sie~sE~Ls~~L~~~Gi~~---------------------------------------~vLnak~~~rEa~iia~a 505 (922)
T 1nkt_A 465 IGTTSVERSEYLSRQFTKRRIPH---------------------------------------NVLNAKYHEQEATIIAVA 505 (922)
T ss_dssp EEESCHHHHHHHHHHHHHTTCCC---------------------------------------EEECSSCHHHHHHHHHTT
T ss_pred EEECCHHHHHHHHHHHHHCCCCE---------------------------------------EEecCChhHHHHHHHHhc
Confidence 99999999999999999877764 369999988888888889
Q ss_pred hcCCCeeEEEecccccccCCCCCc----------------------------------------------------eEEE
Q 039491 770 FCRGVVKVLFSTETFAMGVNAPAR----------------------------------------------------TVVF 797 (1379)
Q Consensus 770 F~~G~ikVLVATetla~GINiPa~----------------------------------------------------tvVI 797 (1379)
|+.| .|+|||++++||+|++.. .+||
T Consensus 506 gr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI 583 (922)
T 1nkt_A 506 GRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVL 583 (922)
T ss_dssp TSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEE
T ss_pred CCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEE
Confidence 9988 699999999999999964 5899
Q ss_pred ccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCC
Q 039491 798 DNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 798 ~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~ 841 (1379)
+ |+. |.+...|.|++||+||.|.. |.++.+++.+
T Consensus 584 ~----te~----pes~riy~qr~GRTGRqGdp--G~s~fflSle 617 (922)
T 1nkt_A 584 G----TER----HESRRIDNQLRGRSGRQGDP--GESRFYLSLG 617 (922)
T ss_dssp E----CSC----CSSHHHHHHHHHTSSGGGCC--EEEEEEEETT
T ss_pred e----ccC----CCCHHHHHHHhcccccCCCC--eeEEEEechh
Confidence 9 777 89999999999999999965 9999888754
No 53
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.96 E-value=2.6e-28 Score=321.30 Aligned_cols=381 Identities=15% Similarity=0.099 Sum_probs=236.1
Q ss_pred CCCCCCHHHHHHHHHHHC--CCcEEEEcCCCccHHHHHHHHHHHHHhcCC--cEEEecchHHHHHHHHHHHhccc--cEE
Q 039491 397 FPFELDNFQKEAIYYLEN--GDSVFVAAHTSAGKTVVAEYAFALATKHCT--RAVYTAPIKTISNQKYRDFSGKF--DVG 470 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~L~~--g~sVlV~ApTGSGKTlvae~aI~~~l~~~~--raIylsPtkaLsnQk~~~~~~~f--~Vg 470 (1379)
..++|+|||.+++..+.. +.+++++++||+|||++|..++...+..+. +++|++|+ +|..|+.++|.+.| ++.
T Consensus 150 ~~~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~ 228 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFA 228 (968)
T ss_dssp CSSCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCE
T ss_pred CCCCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEE
Confidence 357899999999988754 458999999999999999888887776654 99999999 99999999998888 788
Q ss_pred EEecCc---------ccCCCCceeeecHHHHHHHHhc-CcccCCCccEEEEeccCCCCCccch--hHHHHHHHHcCccce
Q 039491 471 LLTGDV---------SLRPEASCLIMTTEILRSMLYR-GADIIRDIEWVIFDEVHYVNDIERG--VVWEEVIIMLPRHIN 538 (1379)
Q Consensus 471 lltGdv---------~in~~a~IlV~TpEiL~smL~~-~~~~l~~v~lVI~DEaH~l~d~~rG--~v~eeii~~Lp~~vq 538 (1379)
+++|+. ......+|+|+|++.+.+.... ......++++||+||||++.+.... ..+..+........+
T Consensus 229 v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~ 308 (968)
T 3dmq_A 229 LFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPG 308 (968)
T ss_dssp ECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSS
T ss_pred EEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCc
Confidence 887654 2223578999999988642211 1122457899999999999754422 223333333334557
Q ss_pred EEEecccCC-Ch-HHHHHHHhhhcCCcEEEE---------------------c----cCCCCcCceEE------------
Q 039491 539 IVLLSATVP-NT-VEFADWIGRTKQKKIRVT---------------------G----TTKRPVPLEHC------------ 579 (1379)
Q Consensus 539 iIlLSATvp-N~-~efa~wl~~~~~~~i~vi---------------------~----t~~RpvpLe~~------------ 579 (1379)
+++||||+. |. .++..++........... . +......+...
T Consensus 309 ~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~ 388 (968)
T 3dmq_A 309 VLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQA 388 (968)
T ss_dssp EEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGG
T ss_pred EEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhc
Confidence 999999963 22 222222221111000000 0 00000000000
Q ss_pred ----------------------------Ee----------ecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCC
Q 039491 580 ----------------------------LY----------YSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGS 621 (1379)
Q Consensus 580 ----------------------------l~----------~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~ 621 (1379)
++ +....+.+. -. ....+.................
T Consensus 389 ~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~--l~-~~~~~~~~~~~~~~~~~~~~~~---- 461 (968)
T 3dmq_A 389 ANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIK--LP-LPTQYQTAIKVSGIMGARKSAE---- 461 (968)
T ss_dssp TCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEE--EC-CCHHHHHHHHHHHHTTCCSSGG----
T ss_pred ccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeee--cC-CCHHHHHHHHHHhhhhhhhhhH----
Confidence 00 000000000 00 0111222221111100000000
Q ss_pred CCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHH
Q 039491 622 YAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKL 701 (1379)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~l 701 (1379)
....... . +... ................+...+...+......++||||+++..++.+
T Consensus 462 -------~~~~~~l-~-----------pe~~---~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l 519 (968)
T 3dmq_A 462 -------DRARDML-Y-----------PERI---YQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQL 519 (968)
T ss_dssp -------GGTHHHH-C-----------SGGG---TTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHH
T ss_pred -------HHHhhhc-C-----------hHHH---HHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHH
Confidence 0000000 0 0000 0000000000111344566777777777778999999999999999
Q ss_pred HHHhhc-CCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCC--eeEE
Q 039491 702 ADGMSG-IDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGV--VKVL 778 (1379)
Q Consensus 702 A~~L~~-~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~--ikVL 778 (1379)
+..|.. .++ .++.+||+|++.+|+.++..|++|. ++||
T Consensus 520 ~~~L~~~~g~---------------------------------------~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vL 560 (968)
T 3dmq_A 520 EQVLREREGI---------------------------------------RAAVFHEGMSIIERDRAAAWFAEEDTGAQVL 560 (968)
T ss_dssp HHHHHTTTCC---------------------------------------CEEEECTTSCTTHHHHHHHHHHSTTSSCEEE
T ss_pred HHHHHHHcCC---------------------------------------cEEEEeCCCCHHHHHHHHHHHhCCCCcccEE
Confidence 999974 232 3678999999999999999999998 9999
Q ss_pred EecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCCCCHHHHHHHHhcC
Q 039491 779 FSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGS 855 (1379)
Q Consensus 779 VATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~~~~~~l~~li~g~ 855 (1379)
|||+++++|+|+|.+++||+ ||. |.++..|.||+||+||.|......++.++.... -...+.+++..+
T Consensus 561 vaT~v~~~GlDl~~~~~VI~----~d~----p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t-~ee~i~~~~~~k 628 (968)
T 3dmq_A 561 LCSEIGSEGRNFQFASHMVM----FDL----PFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKT-AQSVLVRWYHEG 628 (968)
T ss_dssp ECSCCTTCSSCCTTCCEEEC----SSC----CSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTS-HHHHHHHHHHHT
T ss_pred EecchhhcCCCcccCcEEEE----ecC----CCCHHHHHHHhhccccCCCCceEEEEEecCCCh-HHHHHHHHHHhC
Confidence 99999999999999999999 999 899999999999999999875556666666553 334455555433
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.95 E-value=2e-26 Score=282.90 Aligned_cols=378 Identities=16% Similarity=0.137 Sum_probs=223.6
Q ss_pred CCCCCCHHHHHHHHHH----HCCCcEEEEcCCCccHHHHHHHHHHHHHhc--CCcEEEecchHHHHHHHHHHHhccc---
Q 039491 397 FPFELDNFQKEAIYYL----ENGDSVFVAAHTSAGKTVVAEYAFALATKH--CTRAVYTAPIKTISNQKYRDFSGKF--- 467 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~L----~~g~sVlV~ApTGSGKTlvae~aI~~~l~~--~~raIylsPtkaLsnQk~~~~~~~f--- 467 (1379)
+..+|+|||++++..+ ..+.+++++++||+|||+++...+...... ..++||++| .+|..|+.+++++.+
T Consensus 34 ~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~~ 112 (500)
T 1z63_A 34 IKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHL 112 (500)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTS
T ss_pred hhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCCc
Confidence 3456999999999876 467899999999999999987666655533 478999999 579999999999876
Q ss_pred cEEEEecCccc--CCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEeccc
Q 039491 468 DVGLLTGDVSL--RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSAT 545 (1379)
Q Consensus 468 ~VglltGdv~i--n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSAT 545 (1379)
++.+++|+... ....+|+|+|++.+.+... ....++++||+||||++.+.. ......+..++. .+.++||||
T Consensus 113 ~v~~~~g~~~~~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~~-~~~l~LTaT 186 (500)
T 1z63_A 113 RFAVFHEDRSKIKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELKS-KYRIALTGT 186 (500)
T ss_dssp CEEECSSSTTSCCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSCE-EEEEEECSS
T ss_pred eEEEEecCchhccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhcc-CcEEEEecC
Confidence 78888887642 2357899999999865432 223468999999999997643 334445555653 578999999
Q ss_pred CC-C-hHHHHHHHhhhcC--------------------------------CcEEEEccC-------CCCcCceEEEeecC
Q 039491 546 VP-N-TVEFADWIGRTKQ--------------------------------KKIRVTGTT-------KRPVPLEHCLYYSG 584 (1379)
Q Consensus 546 vp-N-~~efa~wl~~~~~--------------------------------~~i~vi~t~-------~RpvpLe~~l~~~~ 584 (1379)
+. | ..++...+..... .++.+..+. .-|...++.++
T Consensus 187 P~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~--- 263 (500)
T 1z63_A 187 PIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVY--- 263 (500)
T ss_dssp CSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEE---
T ss_pred CCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEE---
Confidence 53 3 2344332221111 011111111 01111111111
Q ss_pred ceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCC-CccccccccCCCCCCCc
Q 039491 585 EFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQN-KHSVVGIKNSGGSQNNW 663 (1379)
Q Consensus 585 ~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~-~~~~~~~~~~~~~~~~~ 663 (1379)
++-.......|.......... ... . .... ..+........-++- .++.. .. .+...
T Consensus 264 -----~~l~~~~~~~y~~~~~~~~~~----~~~-------~-~~~~-~~~~~~~~l~~lr~~~~~p~l-~~-~~~~~--- 320 (500)
T 1z63_A 264 -----CNLTPEQAAMYKAEVENLFNN----IDS-------V-TGIK-RKGMILSTLLKLKQIVDHPAL-LK-GGEQS--- 320 (500)
T ss_dssp -----ECCCHHHHHHHHHHHHHHTTT----TTT-------C-CTHH-HHHHHHHHHHHHHHHTTCTHH-HH-CSCCC---
T ss_pred -----cCCCHHHHHHHHHHHHHHHHH----HHh-------h-hccc-chHHHHHHHHHHHHHhCCHHH-hc-Cccch---
Confidence 010000011111111111000 000 0 0000 000000000000000 00000 00 00000
Q ss_pred ccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHH
Q 039491 664 GLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRV 743 (1379)
Q Consensus 664 ~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l 743 (1379)
.........+..++..+.. .+.++||||.++..++.++..|...
T Consensus 321 ~~~s~K~~~l~~~l~~~~~-~~~k~lvF~~~~~~~~~l~~~l~~~----------------------------------- 364 (500)
T 1z63_A 321 VRRSGKMIRTMEIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKE----------------------------------- 364 (500)
T ss_dssp STTCHHHHHHHHHHHHHHT-TTCCEEEECSCHHHHHHHHHHHHHH-----------------------------------
T ss_pred hhcchhHHHHHHHHHHHHc-cCCcEEEEEehHHHHHHHHHHHHHh-----------------------------------
Confidence 0000012223333333332 4579999999999999998888542
Q ss_pred HHhhccceEEecCCCChHHHHHHHHHhcCC-Cee-EEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhc
Q 039491 744 QSLLRRGIAIHHAGLLPIVKEVIEMLFCRG-VVK-VLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAG 821 (1379)
Q Consensus 744 ~~lL~rGIavhHggL~~~~Re~Ve~lF~~G-~ik-VLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaG 821 (1379)
....+..+||++++.+|+.++..|++| .++ +|+||+++++|+|+|++++||. ||. ++++..|.||+|
T Consensus 365 ---~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~----~d~----~~~~~~~~Q~~g 433 (500)
T 1z63_A 365 ---LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH----FDR----WWNPAVEDQATD 433 (500)
T ss_dssp ---HTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEE----SSC----CSCC---CHHHH
T ss_pred ---hCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEE----eCC----CCCcchHHHHHH
Confidence 112356799999999999999999998 565 7999999999999999999999 998 999999999999
Q ss_pred ccCCCCCCCcEEEEEEecCCCCCHHHHHHHHhcC
Q 039491 822 RAGRRGLDKIGTVVVLCRDEIPGESDLKHIIVGS 855 (1379)
Q Consensus 822 RAGRrG~d~~G~vIil~~~~~~~~~~l~~li~g~ 855 (1379)
|++|.|......++.++..+. -...+..++..+
T Consensus 434 R~~R~Gq~~~v~v~~lv~~~t-iee~i~~~~~~K 466 (500)
T 1z63_A 434 RVYRIGQTRNVIVHKLISVGT-LEEKIDQLLAFK 466 (500)
T ss_dssp TTTTTTTTSCEEEEEEEETTS-HHHHTHHHHTTC
T ss_pred HHHHcCCCCeeEEEEEEeCCC-HHHHHHHHHHHH
Confidence 999999987788888877654 233444444433
No 55
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=1e-25 Score=243.56 Aligned_cols=187 Identities=18% Similarity=0.239 Sum_probs=161.2
Q ss_pred cccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh---cCCc
Q 039491 370 KEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK---HCTR 445 (1379)
Q Consensus 370 ~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~---~~~r 445 (1379)
+.+|+++++.+.+.+.+.+ ++|. |+++|++|++.+.+|++++++||||+|||++|.++++..+. .+.+
T Consensus 2 ~~~f~~~~l~~~l~~~l~~--------~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~ 73 (206)
T 1vec_A 2 GNEFEDYCLKRELLMGIFE--------MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQ 73 (206)
T ss_dssp CSSGGGSCCCHHHHHHHHT--------TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCC
T ss_pred CCChhhcCCCHHHHHHHHH--------CCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCee
Confidence 3579999999999999987 7886 99999999999999999999999999999999999988763 3578
Q ss_pred EEEecchHHHHHHHHHHHhccc------cEEEEecCccc-------CCCCceeeecHHHHHHHHhcCcccCCCccEEEEe
Q 039491 446 AVYTAPIKTISNQKYRDFSGKF------DVGLLTGDVSL-------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFD 512 (1379)
Q Consensus 446 aIylsPtkaLsnQk~~~~~~~f------~VglltGdv~i-------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~D 512 (1379)
+||++|+++|++|+++.+++.+ .++.++|+... ...++|+|+||+.|.+++.++...+.++++||+|
T Consensus 74 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViD 153 (206)
T 1vec_A 74 AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLD 153 (206)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEE
Confidence 9999999999999999987754 68888888763 3567999999999999998887788999999999
Q ss_pred ccCCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEE
Q 039491 513 EVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRV 566 (1379)
Q Consensus 513 EaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~v 566 (1379)
|||++.+.+++..++.++..+++..|+++||||+++.. .+++.....+++.+
T Consensus 154 Eah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~--~~~~~~~l~~p~~i 205 (206)
T 1vec_A 154 EADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSV--QKFMNSHLEKPYEI 205 (206)
T ss_dssp THHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHH--HHHHHHHCSSCEEE
T ss_pred ChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHH--HHHHHHHcCCCeEe
Confidence 99999988899999999999998999999999998643 35555444555443
No 56
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.94 E-value=3.9e-26 Score=254.31 Aligned_cols=190 Identities=15% Similarity=0.117 Sum_probs=163.9
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh------
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK------ 441 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~------ 441 (1379)
...+|.++++.+.+...+.+ ++|+ |+++|.+|++.+.+|++++++||||+|||++|.++++..+.
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~--------~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~ 98 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIAR--------QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLE 98 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHT--------TTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCC
T ss_pred ccCCHhhcCCCHHHHHHHHH--------CCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccc
Confidence 45679999999999988877 7888 99999999999999999999999999999999999888764
Q ss_pred --cCCcEEEecchHHHHHHHHHHHhccc-----cEEEEecCcccC-------CCCceeeecHHHHHHHHhcCcccCCCcc
Q 039491 442 --HCTRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSLR-------PEASCLIMTTEILRSMLYRGADIIRDIE 507 (1379)
Q Consensus 442 --~~~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~in-------~~a~IlV~TpEiL~smL~~~~~~l~~v~ 507 (1379)
.+.++||++|+++|+.|+++.+++.+ .++.++|+.... ..++|+|+||++|.+++.++...+.+++
T Consensus 99 ~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 178 (242)
T 3fe2_A 99 RGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTT 178 (242)
T ss_dssp TTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCC
T ss_pred cCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCccccc
Confidence 36789999999999999999888764 788888887643 3479999999999999988888899999
Q ss_pred EEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEc
Q 039491 508 WVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTG 568 (1379)
Q Consensus 508 lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~ 568 (1379)
+|||||||++.+.+++..++.++..++++.|+++||||+++..+ +++....++++.+..
T Consensus 179 ~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~--~~~~~~l~~~~~i~~ 237 (242)
T 3fe2_A 179 YLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVR--QLAEDFLKDYIHINI 237 (242)
T ss_dssp EEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHH--HHHHHHCSSCEEEEE
T ss_pred EEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHH--HHHHHHCCCCEEEEe
Confidence 99999999999999999999999999999999999999987542 444444455665543
No 57
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.94 E-value=8.5e-26 Score=248.78 Aligned_cols=189 Identities=15% Similarity=0.115 Sum_probs=158.3
Q ss_pred ccccccc-cCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh-----
Q 039491 369 QKEAWVV-SGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK----- 441 (1379)
Q Consensus 369 ~~~~w~~-~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~----- 441 (1379)
....|.+ ++..+.+.+++.+ ++|+ |+++|++|++.+.+|++++++||||+|||++|.++++..+.
T Consensus 17 p~~~f~~~~~l~~~l~~~l~~--------~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~ 88 (228)
T 3iuy_A 17 PTCRFKDAFQQYPDLLKSIIR--------VGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS 88 (228)
T ss_dssp CCCSHHHHHTTCHHHHHHHHH--------HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-----
T ss_pred ChhhHhhhhccCHHHHHHHHH--------CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccch
Confidence 4457887 7888888888877 5775 99999999999999999999999999999999999887663
Q ss_pred ----cCCcEEEecchHHHHHHHHHHHhccc----cEEEEecCcccCC-------CCceeeecHHHHHHHHhcCcccCCCc
Q 039491 442 ----HCTRAVYTAPIKTISNQKYRDFSGKF----DVGLLTGDVSLRP-------EASCLIMTTEILRSMLYRGADIIRDI 506 (1379)
Q Consensus 442 ----~~~raIylsPtkaLsnQk~~~~~~~f----~VglltGdv~in~-------~a~IlV~TpEiL~smL~~~~~~l~~v 506 (1379)
.+.++||++|+++|++|+++.+++.. .+..++|+..... .++|+|+||++|.+++.++...++++
T Consensus 89 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 89 REQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp ----CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred hhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 57889999999999999999998863 7888888776543 46999999999999998887788999
Q ss_pred cEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEE
Q 039491 507 EWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVT 567 (1379)
Q Consensus 507 ~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi 567 (1379)
++|||||||++.+.+++..++.++..++++.|+++||||+++..+ +++....++++.++
T Consensus 169 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~--~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 169 TYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVR--QLALSYLKDPMIVY 227 (228)
T ss_dssp CEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHH--HHHHTTCSSCEEEE
T ss_pred eEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHH--HHHHHHCCCCEEEe
Confidence 999999999999999999999999999999999999999987642 44554555565543
No 58
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.93 E-value=8.2e-26 Score=247.56 Aligned_cols=192 Identities=17% Similarity=0.188 Sum_probs=163.7
Q ss_pred ccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh---cCCcE
Q 039491 371 EAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK---HCTRA 446 (1379)
Q Consensus 371 ~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~---~~~ra 446 (1379)
.+|+++++.+.+.+.+.+ ++|. |+++|+++++.+.+|++++++||||+|||++|.++++..+. .+.++
T Consensus 4 ~~f~~~~l~~~l~~~l~~--------~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~ 75 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKT--------LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQA 75 (219)
T ss_dssp CCGGGSCCCHHHHHHHHH--------TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCE
T ss_pred CCHhhCCCCHHHHHHHHH--------CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceE
Confidence 469999999999988877 6766 99999999999999999999999999999999999988874 36789
Q ss_pred EEecchHHHHHHHHHHHhccc---------cEEEEecCccc-------CCCCceeeecHHHHHHHHhcCcccCCCccEEE
Q 039491 447 VYTAPIKTISNQKYRDFSGKF---------DVGLLTGDVSL-------RPEASCLIMTTEILRSMLYRGADIIRDIEWVI 510 (1379)
Q Consensus 447 IylsPtkaLsnQk~~~~~~~f---------~VglltGdv~i-------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI 510 (1379)
||++|+++|++|+++.+++.+ .++.++|+... ...++|+|+||++|.+++.++...+.++++||
T Consensus 76 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lV 155 (219)
T 1q0u_A 76 VITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILV 155 (219)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEE
T ss_pred EEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEE
Confidence 999999999999999887653 57778887652 23578999999999999988777788999999
Q ss_pred EeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEEccCCC
Q 039491 511 FDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTGTTKR 572 (1379)
Q Consensus 511 ~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~t~~R 572 (1379)
+||||++.+.+++..++.++..+++..|+++||||+++. +.+|+.....++..+.....+
T Consensus 156 iDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~--~~~~~~~~~~~p~~~~~~~~~ 215 (219)
T 1q0u_A 156 VDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEK--LKPFLKKYMENPTFVHVLEHH 215 (219)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGG--GHHHHHHHCSSCEEEECC---
T ss_pred EcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHH--HHHHHHHHcCCCeEEEeeccc
Confidence 999999998888889999999999899999999999874 446777777778777655444
No 59
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.93 E-value=2e-25 Score=247.87 Aligned_cols=188 Identities=21% Similarity=0.192 Sum_probs=157.0
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh---cCC
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK---HCT 444 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~---~~~ 444 (1379)
...+|+++++.+.+.+++.+ ++|+ |+++|++|++.+.+|++++++||||+|||++|.++++..+. .+.
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~--------~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~ 99 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYA--------YGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKET 99 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHH--------HTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSC
T ss_pred ccCChhhcCCCHHHHHHHHH--------CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCc
Confidence 34679999999999998876 6787 99999999999999999999999999999999999988874 467
Q ss_pred cEEEecchHHHHHHHHHHHhccc-----cEEEEecCcccCC--------CCceeeecHHHHHHHHhcCcccCCCccEEEE
Q 039491 445 RAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSLRP--------EASCLIMTTEILRSMLYRGADIIRDIEWVIF 511 (1379)
Q Consensus 445 raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~in~--------~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~ 511 (1379)
++||++|+++|++|+++.+++.+ .+..++|+..... .++|+|+||++|.+++.++...+.++++|||
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 100 QALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred eEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEE
Confidence 99999999999999999998764 6777888765432 2789999999999999887777889999999
Q ss_pred eccCCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEE
Q 039491 512 DEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRV 566 (1379)
Q Consensus 512 DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~v 566 (1379)
||||++.+.+++..+..++..++..+|+++||||+++.. .+++....++++.+
T Consensus 180 DEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~--~~~~~~~l~~p~~i 232 (237)
T 3bor_A 180 DEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDV--LEVTKKFMRDPIRI 232 (237)
T ss_dssp ESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHH--HHHHHHHCSSCEEE
T ss_pred CCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHH--HHHHHHHCCCCEEE
Confidence 999999888888889999999999999999999998653 23333333455554
No 60
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.93 E-value=3.9e-24 Score=280.41 Aligned_cols=410 Identities=13% Similarity=0.122 Sum_probs=243.6
Q ss_pred CCCCHHHHHHHHHHHC--------------CCcEEEEcCCCccHHHHHHHHHHHHHh---cCCcEEEecchHHHHHHHHH
Q 039491 399 FELDNFQKEAIYYLEN--------------GDSVFVAAHTSAGKTVVAEYAFALATK---HCTRAVYTAPIKTISNQKYR 461 (1379)
Q Consensus 399 FeL~~~Q~eAI~~L~~--------------g~sVlV~ApTGSGKTlvae~aI~~~l~---~~~raIylsPtkaLsnQk~~ 461 (1379)
+.|+++|.+|++.+.. +++++++++||||||+++.. ++..+. ...++||++|+++|+.|+.+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~-l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFK-AARLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHH-HHHHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHH-HHHHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 4599999999998754 36899999999999999844 445543 23699999999999999999
Q ss_pred HHhccccEEEEecCcc-------c-CCCCceeeecHHHHHHHHhcCc--ccCCCccEEEEeccCCCCCccchhHHHHHHH
Q 039491 462 DFSGKFDVGLLTGDVS-------L-RPEASCLIMTTEILRSMLYRGA--DIIRDIEWVIFDEVHYVNDIERGVVWEEVII 531 (1379)
Q Consensus 462 ~~~~~f~VglltGdv~-------i-n~~a~IlV~TpEiL~smL~~~~--~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~ 531 (1379)
.|...... .+.|..+ + ....+|+|+|++.|..++.... ..+....+||+||||++.. |..+..+..
T Consensus 349 ~f~~f~~~-~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~~~~~~I~~ 424 (1038)
T 2w00_A 349 EYQRFSPD-SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---GEAQKNLKK 424 (1038)
T ss_dssp HHHTTSTT-CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---HHHHHHHHH
T ss_pred HHHHhccc-ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---hHHHHHHHH
Confidence 99886521 1122221 1 3467999999999998876542 2456789999999999753 556777777
Q ss_pred HcCccceEEEecccCCChH------HHHHHHhhhcCCcEEEEcc-----CCCCcCceEEEeecCceeeeccCcccchhhH
Q 039491 532 MLPRHINIVLLSATVPNTV------EFADWIGRTKQKKIRVTGT-----TKRPVPLEHCLYYSGEFYKVCENEAFIPQGW 600 (1379)
Q Consensus 532 ~Lp~~vqiIlLSATvpN~~------efa~wl~~~~~~~i~vi~t-----~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~ 600 (1379)
.+|. .++++||||+.... ....++| ..++.+.- +..-+|+...+.... .. +
T Consensus 425 ~~p~-a~~lgfTATP~~~~~~~~~~~t~~~FG----~~i~~Y~l~~AI~dg~l~p~~v~y~~v~--------~~-----~ 486 (1038)
T 2w00_A 425 KFKR-YYQFGFTGTPIFPENALGSETTASVFG----RELHSYVITDAIRDEKVLKFKVDYNDVR--------PQ-----F 486 (1038)
T ss_dssp HCSS-EEEEEEESSCCCSTTCTTSCCHHHHHC----SEEEEECHHHHHHHTSSCCEEEEECCCC--------GG-----G
T ss_pred hCCc-ccEEEEeCCccccccchhhhHHHHHhC----CeeEeecHHHHHhCCCcCCeEEEEEecc--------ch-----h
Confidence 7874 79999999976432 2334444 23333211 122233322111000 00 1
Q ss_pred HHHH-----HHHHhhccccccCCCCCCCCCCCCcccccccccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHH
Q 039491 601 KAAK-----DAYKRKNLSAASGATGSYAGASSPRDGARAQKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLT 675 (1379)
Q Consensus 601 ~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1379)
.... ...... . .. . . .............
T Consensus 487 ~~~~~e~d~~~~~~i---~-~~--------------------------------~-------~----l~~~~ri~~I~~~ 519 (1038)
T 2w00_A 487 KSLETETDEKKLSAA---E-NQ--------------------------------Q-------A----FLHPMRIQEITQY 519 (1038)
T ss_dssp HHHHTCCCHHHHHHT---C-ST--------------------------------T-------T----TTCHHHHHHHHHH
T ss_pred hhccccccHHHHHHH---H-HH--------------------------------H-------H----hcCHHHHHHHHHH
Confidence 0000 000000 0 00 0 0 0000001222333
Q ss_pred HHHHHHhC--------CCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhh
Q 039491 676 LINKLSKK--------SLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLL 747 (1379)
Q Consensus 676 Li~~L~~~--------~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL 747 (1379)
++...... .+.++||||.|+..|..++..|...+. ....... ....
T Consensus 520 Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~--------------~~~~~~~-~~~~----------- 573 (1038)
T 2w00_A 520 ILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQE--------------EAANKSA-TYKP----------- 573 (1038)
T ss_dssp HHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHH--------------HHTTTSS-SCCC-----------
T ss_pred HHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhh--------------hhccccc-cccc-----------
Confidence 44444321 235799999999999999998865320 0000000 0000
Q ss_pred ccce-EEecCC----------C----------C-----------------------------hHHHHHHHHHhcCCCeeE
Q 039491 748 RRGI-AIHHAG----------L----------L-----------------------------PIVKEVIEMLFCRGVVKV 777 (1379)
Q Consensus 748 ~rGI-avhHgg----------L----------~-----------------------------~~~Re~Ve~lF~~G~ikV 777 (1379)
..+ .++||+ + + ...|+.+...|++|.++|
T Consensus 574 -~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~I 652 (1038)
T 2w00_A 574 -LRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDL 652 (1038)
T ss_dssp -CCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSE
T ss_pred -CcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeE
Confidence 001 122221 1 1 225888999999999999
Q ss_pred EEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCC--CcEEEEEEecCCCCCHHHHHHHHhcC
Q 039491 778 LFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLD--KIGTVVVLCRDEIPGESDLKHIIVGS 855 (1379)
Q Consensus 778 LVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d--~~G~vIil~~~~~~~~~~l~~li~g~ 855 (1379)
||+|+.+.+|+|+|.+++++ +|. |++...|+|++||+||.+.+ ..|.+|.+.+. ...+...+.--
T Consensus 653 LIvvd~lltGfDiP~l~tly-----lDk----pl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~----~~~l~~Al~~y 719 (1038)
T 2w00_A 653 LIVVGMFLTGFDAPTLNTLF-----VDK----NLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL----ERSTIDAITLF 719 (1038)
T ss_dssp EEESSTTSSSCCCTTEEEEE-----EES----CCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC----HHHHHHHHHHT
T ss_pred EEEcchHHhCcCcccccEEE-----Ecc----CCCccceeehhhccCcCCCCCCCcEEEEEcccc----HHHHHHHHHHH
Confidence 99999999999999997765 555 88999999999999998863 46888877753 23333322200
Q ss_pred CCcccccccccHHHHHHHHhhccccH-HHHHhhChhhHHhc----------CCcHHHHHHHHHHHcCCCCcccccCCcch
Q 039491 856 ATRLESQFRLTYIMILHLLRVEELKV-EDMLKRSFAEFHSQ----------KKLPEQQQLLMRKLAQPPKTIECIKGEPA 924 (1379)
Q Consensus 856 ~~~L~S~f~lty~miLnLlr~e~~~~-e~~l~~SF~e~~~~----------~~~~~~~~~l~~~l~~~~~~i~c~~~~~~ 924 (1379)
..-+. ..++..+|.++... +..|.....+ ...+....|+..+.+
T Consensus 720 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~i~~~~~ 774 (1038)
T 2w00_A 720 ---------------------GDKNTKNVVLEKSYTEYMEGFTDAATGEAKRGFMTVVSEL----EQRFPDPTSIESEKE 774 (1038)
T ss_dssp ---------------------SCSSHHHHHBCCCHHHHHHCEECTTTCCEECCHHHHHHHH----HHHCCCSSSSCSHHH
T ss_pred ---------------------hCCCCcCceehhhhHHHHHhhcccccccccccHHHHHHHH----HHhCCCcccCCCHHH
Confidence 00011 11233455554432 2224444444 222222234556778
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039491 925 IEEYYDMYYEAEKYNNQIT 943 (1379)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~ 943 (1379)
..+|..+..++.++...+.
T Consensus 775 ~~~f~~~f~~~~~~~~~l~ 793 (1038)
T 2w00_A 775 KKDFVKLFGEYLRAENILQ 793 (1038)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8889888888887776654
No 61
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.93 E-value=4.3e-25 Score=244.01 Aligned_cols=188 Identities=16% Similarity=0.121 Sum_probs=161.9
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh---cCC
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK---HCT 444 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~---~~~ 444 (1379)
....|+++++.+.+.+.+.+ ++|+ |+++|+++++.+.+|++++++||||+|||++|.++++..+. .+.
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~--------~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~ 93 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRA--------AGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLST 93 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHH--------TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSC
T ss_pred CCCCHhhcCCCHHHHHHHHH--------CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCc
Confidence 45679999999999998876 7888 99999999999999999999999999999999999888763 457
Q ss_pred cEEEecchHHHHHHHHHHHhccc------cEEEEecCcccC------CCCceeeecHHHHHHHHhcCcccCCCccEEEEe
Q 039491 445 RAVYTAPIKTISNQKYRDFSGKF------DVGLLTGDVSLR------PEASCLIMTTEILRSMLYRGADIIRDIEWVIFD 512 (1379)
Q Consensus 445 raIylsPtkaLsnQk~~~~~~~f------~VglltGdv~in------~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~D 512 (1379)
++||++|+++|++|+++.+++.. +++.++|+.... ..++|+|+||++|.+++.++...+.++++||+|
T Consensus 94 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViD 173 (230)
T 2oxc_A 94 QILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILD 173 (230)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEES
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeC
Confidence 99999999999999999998753 688899987632 357999999999999998877778899999999
Q ss_pred ccCCCCCcc-chhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEE
Q 039491 513 EVHYVNDIE-RGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRV 566 (1379)
Q Consensus 513 EaH~l~d~~-rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~v 566 (1379)
|||++.+.+ ++..++.++..++...|+++||||+++. +.+++....++++++
T Consensus 174 Eah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~--~~~~~~~~~~~p~~i 226 (230)
T 2oxc_A 174 EADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEF--LANALTKYMRDPTFV 226 (230)
T ss_dssp SHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHH--HHHHHTTTCSSCEEE
T ss_pred CchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHH--HHHHHHHHcCCCeEE
Confidence 999998876 7888899999999899999999998764 557777666666554
No 62
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.93 E-value=3.7e-25 Score=239.15 Aligned_cols=184 Identities=17% Similarity=0.182 Sum_probs=159.7
Q ss_pred cccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh------cCC
Q 039491 372 AWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK------HCT 444 (1379)
Q Consensus 372 ~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~------~~~ 444 (1379)
+|.+++..+.+.+.+.+ .+|. |+++|+++++.+.+|++++++||||+|||++|.++++..+. .+.
T Consensus 2 ~f~~~~l~~~l~~~l~~--------~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~ 73 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHG--------RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKP 73 (207)
T ss_dssp CGGGSCCCHHHHHHHHH--------TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCC
T ss_pred ChhhcCCCHHHHHHHHH--------cCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCC
Confidence 69999999999988877 6775 99999999999999999999999999999999999988863 467
Q ss_pred cEEEecchHHHHHHHHHHHhccc---cEEEEecCcccC-------CCCceeeecHHHHHHHHhcCcccCCCccEEEEecc
Q 039491 445 RAVYTAPIKTISNQKYRDFSGKF---DVGLLTGDVSLR-------PEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEV 514 (1379)
Q Consensus 445 raIylsPtkaLsnQk~~~~~~~f---~VglltGdv~in-------~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEa 514 (1379)
+++|++|+++|++|+++.+++.+ +++.++|+.... ..++|+|+||+.+.+++.++...+.++++||+|||
T Consensus 74 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEa 153 (207)
T 2gxq_A 74 RALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEA 153 (207)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESH
T ss_pred cEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEECh
Confidence 89999999999999999999886 788888887632 35799999999999999887778899999999999
Q ss_pred CCCCCccchhHHHHHHHHcCccceEEEecccCCChH-HHHHHHhhhcCCcEEE
Q 039491 515 HYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTV-EFADWIGRTKQKKIRV 566 (1379)
Q Consensus 515 H~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~-efa~wl~~~~~~~i~v 566 (1379)
|++.+.+++..++.++..++...|+++||||+++.. +++++. ..+++.+
T Consensus 154 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~---~~~p~~i 203 (207)
T 2gxq_A 154 DEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERY---MKNPVLI 203 (207)
T ss_dssp HHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHH---CSSCEEE
T ss_pred hHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHH---cCCCeEE
Confidence 999888889999999999998999999999998753 455544 3445443
No 63
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.93 E-value=4.6e-25 Score=241.80 Aligned_cols=189 Identities=21% Similarity=0.207 Sum_probs=157.7
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh---cCC
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK---HCT 444 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~---~~~ 444 (1379)
...+|+++++.+.+.+.+.+ ++|. |+++|++|++.+.+|++++++||||+|||++|.++++..+. .+.
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~--------~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~ 83 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFG--------YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAP 83 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHH--------HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSC
T ss_pred ccCChhhcCCCHHHHHHHHH--------CCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCc
Confidence 34679999999999988877 5776 99999999999999999999999999999999999988773 457
Q ss_pred cEEEecchHHHHHHHHHHHhccc-----cEEEEecCcccCC------CCceeeecHHHHHHHHhcCcccCCCccEEEEec
Q 039491 445 RAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSLRP------EASCLIMTTEILRSMLYRGADIIRDIEWVIFDE 513 (1379)
Q Consensus 445 raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~in~------~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DE 513 (1379)
++||++|+++|++|+++.+++.+ .++.++|+..... .++|+|+||+.|.+++.++...+.++++|||||
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDE 163 (224)
T 1qde_A 84 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 163 (224)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred eEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcC
Confidence 99999999999999999998764 6888888776432 379999999999999988877889999999999
Q ss_pred cCCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEE
Q 039491 514 VHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVT 567 (1379)
Q Consensus 514 aH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi 567 (1379)
||++.+.+++..+..++..+++..|+++||||+++.. .+.+......++.+.
T Consensus 164 ah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~--~~~~~~~~~~p~~i~ 215 (224)
T 1qde_A 164 ADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDV--LEVTTKFMRNPVRIL 215 (224)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHH--HHHHHHHCSSCEEEC
T ss_pred hhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHH--HHHHHHHCCCCEEEE
Confidence 9999988888889999999999999999999998754 233343445555543
No 64
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.93 E-value=7.8e-25 Score=242.33 Aligned_cols=188 Identities=20% Similarity=0.228 Sum_probs=158.5
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHH-------
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALAT------- 440 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l------- 440 (1379)
...+|++++..+.+.+.+.+ ++|. |+++|+++++.+.+|++++++||||+|||++|.++++..+
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~--------~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~ 94 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQE--------AQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTS 94 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHH--------TTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCG
T ss_pred ccCCHhhcCCCHHHHHHHHH--------CCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccc
Confidence 45679999999999998876 6777 9999999999999999999999999999999999988776
Q ss_pred hcCCcEEEecchHHHHHHHHHHHhccc-----cEEEEecCcccC------CCCceeeecHHHHHHHHhcC-cccCCCccE
Q 039491 441 KHCTRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSLR------PEASCLIMTTEILRSMLYRG-ADIIRDIEW 508 (1379)
Q Consensus 441 ~~~~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~in------~~a~IlV~TpEiL~smL~~~-~~~l~~v~l 508 (1379)
..+.++||++|+++|++|+++.+++.+ .++.++|+.... ..++|+|+||+.|..++.+. ...+.++++
T Consensus 95 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~ 174 (236)
T 2pl3_A 95 TDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQM 174 (236)
T ss_dssp GGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCE
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccE
Confidence 357899999999999999999998865 688889887642 35799999999999888765 456789999
Q ss_pred EEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChH-HHHHHHhhhcCCcEEEE
Q 039491 509 VIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTV-EFADWIGRTKQKKIRVT 567 (1379)
Q Consensus 509 VI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~-efa~wl~~~~~~~i~vi 567 (1379)
||+||||++.+.+++..+..++..+++..|+++||||+++.. +++++ ...++.++.
T Consensus 175 lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~---~~~~p~~i~ 231 (236)
T 2pl3_A 175 LVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARL---SLKNPEYVW 231 (236)
T ss_dssp EEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHH---SCSSCEEEE
T ss_pred EEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHH---hCCCCEEEE
Confidence 999999999988889999999999999999999999998754 44443 334555543
No 65
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.92 E-value=7.3e-25 Score=252.54 Aligned_cols=189 Identities=14% Similarity=0.121 Sum_probs=158.1
Q ss_pred ccccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCC--CcEEEEcCCCccHHHHHHHHHHHHHh--
Q 039491 367 QQQKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENG--DSVFVAAHTSAGKTVVAEYAFALATK-- 441 (1379)
Q Consensus 367 ~~~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g--~sVlV~ApTGSGKTlvae~aI~~~l~-- 441 (1379)
.....+|.++++.+.++.++.. ++|. |+++|.+|++.+..| ++++++||||||||++|.++++..+.
T Consensus 88 ~~~~~~f~~l~l~~~l~~~l~~--------~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~ 159 (300)
T 3fmo_B 88 LYSVKSFEELRLKPQLLQGVYA--------MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA 159 (300)
T ss_dssp CCCCCCSGGGTCCHHHHHHHHH--------TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT
T ss_pred cCCcCCHhhcCCCHHHHHHHHH--------cCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc
Confidence 4456789999999999999987 6787 999999999999987 99999999999999999999998874
Q ss_pred -cCCcEEEecchHHHHHHHHHHHhccc------cEEEEecCcccCC----CCceeeecHHHHHHHHhc-CcccCCCccEE
Q 039491 442 -HCTRAVYTAPIKTISNQKYRDFSGKF------DVGLLTGDVSLRP----EASCLIMTTEILRSMLYR-GADIIRDIEWV 509 (1379)
Q Consensus 442 -~~~raIylsPtkaLsnQk~~~~~~~f------~VglltGdv~in~----~a~IlV~TpEiL~smL~~-~~~~l~~v~lV 509 (1379)
.+.++||++||++|+.|+++.++... .++.+.|+..... ..+|+|+||++|.+++.+ +...+.++++|
T Consensus 160 ~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~l 239 (300)
T 3fmo_B 160 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 239 (300)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEE
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEE
Confidence 34589999999999999988887653 6788888776543 468999999999999966 45568899999
Q ss_pred EEeccCCCCC-ccchhHHHHHHHHcCccceEEEecccCCChH-HHHHHHhhhcCCcEEE
Q 039491 510 IFDEVHYVND-IERGVVWEEVIIMLPRHINIVLLSATVPNTV-EFADWIGRTKQKKIRV 566 (1379)
Q Consensus 510 I~DEaH~l~d-~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~-efa~wl~~~~~~~i~v 566 (1379)
||||||++.+ .+++..+..++..+++.+|+++||||+++.. .++.. ...+++.+
T Consensus 240 VlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~---~l~~p~~i 295 (300)
T 3fmo_B 240 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQK---VVPDPNVI 295 (300)
T ss_dssp EETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHH---HSSSCEEE
T ss_pred EEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHH---HCCCCeEE
Confidence 9999999987 5777788888888999999999999999864 34443 33445544
No 66
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.92 E-value=5.3e-25 Score=248.64 Aligned_cols=179 Identities=18% Similarity=0.267 Sum_probs=152.5
Q ss_pred cccccccccC--CChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh---
Q 039491 368 QQKEAWVVSG--STEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK--- 441 (1379)
Q Consensus 368 ~~~~~w~~~~--~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~--- 441 (1379)
.....|+.+. +.+.+++.+.+ ++|+ |+++|.+|++.+..|++++++||||||||++|.++++..+.
T Consensus 49 ~~~~~f~~l~~~l~~~l~~~l~~--------~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~ 120 (262)
T 3ly5_A 49 FEDTSFASLCNLVNENTLKAIKE--------MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR 120 (262)
T ss_dssp SGGGCC-----CCCHHHHHHHHH--------TTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTT
T ss_pred cccCChhHhccccCHHHHHHHHH--------CCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcc
Confidence 3455677776 78888888877 7888 99999999999999999999999999999999999988763
Q ss_pred ----cCCcEEEecchHHHHHHHHHHHhccc-----cEEEEecCcccC-------CCCceeeecHHHHHHHHhcCc-ccCC
Q 039491 442 ----HCTRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSLR-------PEASCLIMTTEILRSMLYRGA-DIIR 504 (1379)
Q Consensus 442 ----~~~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~in-------~~a~IlV~TpEiL~smL~~~~-~~l~ 504 (1379)
.+.++||++|+++|+.|+++.+++.+ .++.++|+.... ...+|+|+||++|..++.+.. ..+.
T Consensus 121 ~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 121 FMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp CCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCT
T ss_pred ccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccc
Confidence 47889999999999999999999865 688899987643 347899999999998887653 5678
Q ss_pred CccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChH-HHHH
Q 039491 505 DIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTV-EFAD 554 (1379)
Q Consensus 505 ~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~-efa~ 554 (1379)
++++|||||||++.+.+++..++.++..++..+|+++||||+++.. +++.
T Consensus 201 ~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~ 251 (262)
T 3ly5_A 201 NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLAR 251 (262)
T ss_dssp TCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHH
T ss_pred cCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999765 4443
No 67
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.92 E-value=1.1e-24 Score=244.15 Aligned_cols=189 Identities=17% Similarity=0.237 Sum_probs=159.4
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc---CC
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH---CT 444 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~---~~ 444 (1379)
...+|+.++..+.+.+.+.+ ++|. |+++|++|++.+.+|++++++||||+|||++|.++++..+.. +.
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~--------~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~ 112 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQ--------LGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRL 112 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHH--------TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSS
T ss_pred ccCCHHHcCCCHHHHHHHHH--------cCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCc
Confidence 45679999999999988877 7786 999999999999999999999999999999999999877633 46
Q ss_pred cEEEecchHHHHHHHHHHHhccc-----cEEEEecCccc-------CCCCceeeecHHHHHHHHhc-CcccCCCccEEEE
Q 039491 445 RAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSL-------RPEASCLIMTTEILRSMLYR-GADIIRDIEWVIF 511 (1379)
Q Consensus 445 raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~i-------n~~a~IlV~TpEiL~smL~~-~~~~l~~v~lVI~ 511 (1379)
++||++|+++|++|+++.+++.+ .++.++|+... ...++|+|+||++|.+++.+ +...+.++++||+
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 79999999999999999888763 78889988763 34679999999999998876 4456889999999
Q ss_pred eccCCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHhhhcCCcEEEE
Q 039491 512 DEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKKIRVT 567 (1379)
Q Consensus 512 DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi 567 (1379)
||||++.+.+++..+..++..+++..|+++||||+++.. .+++.....+++.+.
T Consensus 193 DEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v--~~~~~~~l~~p~~i~ 246 (249)
T 3ber_A 193 DEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKV--QKLQRAALKNPVKCA 246 (249)
T ss_dssp CSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHH--HHHHHHHCSSCEEEE
T ss_pred cChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHH--HHHHHHHCCCCEEEE
Confidence 999999988899999999999998999999999998654 233333345565543
No 68
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.92 E-value=2.3e-24 Score=235.76 Aligned_cols=186 Identities=16% Similarity=0.186 Sum_probs=155.7
Q ss_pred cccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc---CCc
Q 039491 370 KEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH---CTR 445 (1379)
Q Consensus 370 ~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~---~~r 445 (1379)
...|.++++.+.+.+.+.+ ++|+ |+++|++|++.+.+|++++++||||+|||++|.+++...+.. +.+
T Consensus 13 ~~~f~~~~l~~~l~~~l~~--------~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~ 84 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVD--------CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVS 84 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHH--------TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCC
T ss_pred CCCHhhcCCCHHHHHHHHH--------CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEE
Confidence 4579999999999999987 7888 999999999999999999999999999999999999888743 458
Q ss_pred EEEecchHHHHHHHHHHHhccc------cEEEEecCcccC--------CCCceeeecHHHHHHHHhcCcccCCCccEEEE
Q 039491 446 AVYTAPIKTISNQKYRDFSGKF------DVGLLTGDVSLR--------PEASCLIMTTEILRSMLYRGADIIRDIEWVIF 511 (1379)
Q Consensus 446 aIylsPtkaLsnQk~~~~~~~f------~VglltGdv~in--------~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~ 511 (1379)
+||++|+++|++|+++.+++.. +++.++|+.... ...+|+|+||+.|.+++.++...+.++++||+
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 85 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 9999999999999999888753 788999987632 24689999999999999887778899999999
Q ss_pred eccCCCCC-ccchhHHHHHHHHcCccceEEEecccCCChH-HHHHHHhhhcCCcEEE
Q 039491 512 DEVHYVND-IERGVVWEEVIIMLPRHINIVLLSATVPNTV-EFADWIGRTKQKKIRV 566 (1379)
Q Consensus 512 DEaH~l~d-~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~-efa~wl~~~~~~~i~v 566 (1379)
||||++.+ .++...+..++..++...|+++||||+++.. ++++ ....+++.+
T Consensus 165 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~---~~~~~p~~i 218 (220)
T 1t6n_A 165 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR---KFMQDPMEI 218 (220)
T ss_dssp ESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHH---TTCSSCEEE
T ss_pred cCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHH---HHcCCCeEE
Confidence 99999976 4556667778888888999999999998764 4443 333445443
No 69
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.92 E-value=6.4e-23 Score=259.74 Aligned_cols=374 Identities=16% Similarity=0.105 Sum_probs=219.1
Q ss_pred CCCHHHHHHHHHHH---------CCCcEEEEcCCCccHHHHHHHHHHHHHhcC-------CcEEEecchHHHHHHHHHHH
Q 039491 400 ELDNFQKEAIYYLE---------NGDSVFVAAHTSAGKTVVAEYAFALATKHC-------TRAVYTAPIKTISNQKYRDF 463 (1379)
Q Consensus 400 eL~~~Q~eAI~~L~---------~g~sVlV~ApTGSGKTlvae~aI~~~l~~~-------~raIylsPtkaLsnQk~~~~ 463 (1379)
.|+|||++++..+. .+...+++.+||+|||+.+...|...++.+ .++||++|+ .|..|+.++|
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 68999999999873 456799999999999999877777666432 469999997 8889999999
Q ss_pred hccc----cEEEEecCccc---------------CCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchh
Q 039491 464 SGKF----DVGLLTGDVSL---------------RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGV 524 (1379)
Q Consensus 464 ~~~f----~VglltGdv~i---------------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~ 524 (1379)
.+.+ .+..+.|+... ....+|+|+|++.++.... .....++++||+||||++.+.. .
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~--~ 209 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD--N 209 (644)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC--H
T ss_pred HHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChh--h
Confidence 9876 34445444321 1246899999999986532 1223478899999999997643 2
Q ss_pred HHHHHHHHcCccceEEEecccC-CCh-H------------------HHHHHHhhh------cC-----------------
Q 039491 525 VWEEVIIMLPRHINIVLLSATV-PNT-V------------------EFADWIGRT------KQ----------------- 561 (1379)
Q Consensus 525 v~eeii~~Lp~~vqiIlLSATv-pN~-~------------------efa~wl~~~------~~----------------- 561 (1379)
.....+..++. .+.++||||+ .|. . +|.+++... ..
T Consensus 210 ~~~~al~~l~~-~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~ 288 (644)
T 1z3i_X 210 QTYLALNSMNA-QRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELI 288 (644)
T ss_dssp HHHHHHHHHCC-SEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccc-CcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHH
Confidence 33334444543 4779999994 333 1 222222110 00
Q ss_pred ---CcEEEEcc-----CCCCcCceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCC-----
Q 039491 562 ---KKIRVTGT-----TKRPVPLEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSP----- 628 (1379)
Q Consensus 562 ---~~i~vi~t-----~~RpvpLe~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----- 628 (1379)
.++.+..+ ..-|...++.++..- ......-|.. +............+. .....
T Consensus 289 ~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~l--------s~~q~~lY~~----~~~~~~~~~~~~~g~--~~~~~l~~l~ 354 (644)
T 1z3i_X 289 SIVNRCLIRRTSDILSKYLPVKIEQVVCCNL--------TPLQKELYKL----FLKQAKPVESLQTGK--ISVSSLSSIT 354 (644)
T ss_dssp HHHHHHEECCCGGGGGGTSCCEEEEEEEECC--------CHHHHHHHHH----HHHHHCGGGSSCTTC--CCHHHHHHHH
T ss_pred HHHHHHHHHhhHHhHhhhCCCceEEEEEeCC--------CHHHHHHHHH----HHHHHHHHHHHhcCc--cchhHHHHHH
Confidence 00111110 011111222221100 0000000111 100000000000000 00000
Q ss_pred --cccccc-----cccCCCCCCCCCCccccccccCCCCCCCcccccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHH
Q 039491 629 --RDGARA-----QKREHPNRGKQNKHSVVGIKNSGGSQNNWGLRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKL 701 (1379)
Q Consensus 629 --~~~~~~-----~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~l 701 (1379)
++.... ........+.... .... ...-...............+..++..+......++||||.++..++.+
T Consensus 355 ~Lrk~c~hp~l~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l 432 (644)
T 1z3i_X 355 SLKKLCNHPALIYEKCLTGEEGFDGA-LDLF-PQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLF 432 (644)
T ss_dssp HHHHHHHCTHHHHHHHHHTCTTCTTG-GGTS-CSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcccchhhhH-Hhhc-cccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHH
Confidence 000000 0000000000000 0000 000000000000001223445555666555568999999999999999
Q ss_pred HHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCe---eEE
Q 039491 702 ADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVV---KVL 778 (1379)
Q Consensus 702 A~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~i---kVL 778 (1379)
+..|...++. +..+||+++..+|+.+...|++|.. .+|
T Consensus 433 ~~~l~~~g~~---------------------------------------~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L 473 (644)
T 1z3i_X 433 EKLCRNRRYL---------------------------------------YVRLDGTMSIKKRAKIVERFNNPSSPEFIFM 473 (644)
T ss_dssp HHHHHHHTCC---------------------------------------EEEECSSCCHHHHHHHHHHHHSTTCCCCEEE
T ss_pred HHHHHHCCCC---------------------------------------EEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Confidence 8888654332 5568999999999999999999865 489
Q ss_pred EecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCC
Q 039491 779 FSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEI 842 (1379)
Q Consensus 779 VATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~ 842 (1379)
++|.++++|||++++++||+ ||. +++|..|.|++||++|.|......++.++..+.
T Consensus 474 ~st~a~g~Glnl~~a~~Vi~----~d~----~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~t 529 (644)
T 1z3i_X 474 LSSKAGGCGLNLIGANRLVM----FDP----DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGT 529 (644)
T ss_dssp EEGGGSCTTCCCTTEEEEEE----CSC----CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTS
T ss_pred EecccccCCcccccCCEEEE----ECC----CCCccHHHHHHHhhhhcCCCCceEEEEEEECCC
Confidence 99999999999999999999 999 999999999999999999987788888887664
No 70
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.92 E-value=1.6e-24 Score=242.52 Aligned_cols=190 Identities=15% Similarity=0.144 Sum_probs=156.4
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc-----
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH----- 442 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~----- 442 (1379)
...+|.++++.+.+.+++.+ .+|. |+++|.+|++.+.+|++++++||||+|||++|.++++..+..
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~--------~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~ 92 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILL--------ASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQ 92 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTT--------TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC--
T ss_pred ccCCHhhCCCCHHHHHHHHH--------CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhcccc
Confidence 34679999988877766654 6777 999999999999999999999999999999999999887632
Q ss_pred -------CCcEEEecchHHHHHHHHHHHhccc-----cEEEEecCccc-------CCCCceeeecHHHHHHHHhcCcccC
Q 039491 443 -------CTRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVSL-------RPEASCLIMTTEILRSMLYRGADII 503 (1379)
Q Consensus 443 -------~~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~i-------n~~a~IlV~TpEiL~smL~~~~~~l 503 (1379)
+.++||++|+++|++|+++.+++.. .++.++|+... ...++|+|+||++|.+++.++...+
T Consensus 93 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~ 172 (253)
T 1wrb_A 93 QRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISL 172 (253)
T ss_dssp ----CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCC
T ss_pred ccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCCh
Confidence 3689999999999999999988764 67888887763 2457999999999999998887788
Q ss_pred CCccEEEEeccCCCCCccchhHHHHHHHH--cCc--cceEEEecccCCChHHHHHHHhhhcCCcEEEEc
Q 039491 504 RDIEWVIFDEVHYVNDIERGVVWEEVIIM--LPR--HINIVLLSATVPNTVEFADWIGRTKQKKIRVTG 568 (1379)
Q Consensus 504 ~~v~lVI~DEaH~l~d~~rG~v~eeii~~--Lp~--~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~ 568 (1379)
.++++||+||||++.+.+++..+..++.. ++. ..|+++||||+++.. .++......+++.+..
T Consensus 173 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~--~~~~~~~l~~~~~i~~ 239 (253)
T 1wrb_A 173 EFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEI--QKLAADFLYNYIFMTV 239 (253)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHH--HHHHHHHCSSCEEEEE
T ss_pred hhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHH--HHHHHHHcCCCEEEEE
Confidence 99999999999999988899999998884 454 789999999998753 2333333345555543
No 71
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.91 E-value=2.2e-24 Score=240.00 Aligned_cols=189 Identities=16% Similarity=0.218 Sum_probs=151.6
Q ss_pred ccccccc----CCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh---
Q 039491 370 KEAWVVS----GSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK--- 441 (1379)
Q Consensus 370 ~~~w~~~----~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~--- 441 (1379)
..+|.++ .+.+.+.+.+.+ .+|+ |+++|++|++.+.+|++++++||||+|||++|.++++..+.
T Consensus 24 ~~~f~~l~~~~~l~~~l~~~l~~--------~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~ 95 (245)
T 3dkp_A 24 IATFQQLDQEYKINSRLLQNILD--------AGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA 95 (245)
T ss_dssp CSSHHHHHHHHCCCHHHHHHHHH--------TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCC
T ss_pred ccCHHHhhhccCCCHHHHHHHHH--------CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcc
Confidence 3456665 788888888876 6887 99999999999999999999999999999999999988874
Q ss_pred -cCCcEEEecchHHHHHHHHHHHhccc-----cEEEEecCcc--------cCCCCceeeecHHHHHHHHhcC--cccCCC
Q 039491 442 -HCTRAVYTAPIKTISNQKYRDFSGKF-----DVGLLTGDVS--------LRPEASCLIMTTEILRSMLYRG--ADIIRD 505 (1379)
Q Consensus 442 -~~~raIylsPtkaLsnQk~~~~~~~f-----~VglltGdv~--------in~~a~IlV~TpEiL~smL~~~--~~~l~~ 505 (1379)
.+.++||++|+++|++|+++.+++.+ .+..++|+.. ....++|+|+||++|.+++.+. ...+.+
T Consensus 96 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 175 (245)
T 3dkp_A 96 NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLAS 175 (245)
T ss_dssp SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTT
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccccc
Confidence 46789999999999999999999875 5666665432 2345789999999999999876 356789
Q ss_pred ccEEEEeccCCCCCcc---chhHHHHHHHHc-CccceEEEecccCCChHHHHHHHhhhcCCcEEEEc
Q 039491 506 IEWVIFDEVHYVNDIE---RGVVWEEVIIML-PRHINIVLLSATVPNTVEFADWIGRTKQKKIRVTG 568 (1379)
Q Consensus 506 v~lVI~DEaH~l~d~~---rG~v~eeii~~L-p~~vqiIlLSATvpN~~efa~wl~~~~~~~i~vi~ 568 (1379)
+++|||||||++.+++ +...+..++..+ +..+|+++||||+++ ++.+|+....++++.+..
T Consensus 176 ~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~--~v~~~~~~~l~~p~~i~~ 240 (245)
T 3dkp_A 176 VEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAY--DVEQWCKLNLDNVISVSI 240 (245)
T ss_dssp CCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCH--HHHHHHHHHSSSCEEEEE
T ss_pred CcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCH--HHHHHHHHhCCCCEEEEe
Confidence 9999999999998754 333444444444 457899999999976 445777777777766654
No 72
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.3e-23 Score=270.01 Aligned_cols=374 Identities=18% Similarity=0.138 Sum_probs=224.9
Q ss_pred CCCCCCHHHHHHHHHHH----CCCcEEEEcCCCccHHHHHHHHHHHHH---hcCCcEEEecchHHHHHHHHHHHhccc--
Q 039491 397 FPFELDNFQKEAIYYLE----NGDSVFVAAHTSAGKTVVAEYAFALAT---KHCTRAVYTAPIKTISNQKYRDFSGKF-- 467 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~L~----~g~sVlV~ApTGSGKTlvae~aI~~~l---~~~~raIylsPtkaLsnQk~~~~~~~f-- 467 (1379)
.+.+|+|||.+++..+. .+.+++++.+||+|||+++..+|...+ ....++||++| .+|..|+.++|.+.+
T Consensus 233 ~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~ 311 (800)
T 3mwy_W 233 KGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPD 311 (800)
T ss_dssp CSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTT
T ss_pred CCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCC
Confidence 35579999999998664 788999999999999998776665543 34567999999 788999999999877
Q ss_pred -cEEEEecCcc-------------------cCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHH
Q 039491 468 -DVGLLTGDVS-------------------LRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWE 527 (1379)
Q Consensus 468 -~VglltGdv~-------------------in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~e 527 (1379)
++.+++|+.. .....+|+|+|++.+...... ..-..+++||+||||++.+. .....
T Consensus 312 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~--~s~~~ 387 (800)
T 3mwy_W 312 LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNA--ESSLY 387 (800)
T ss_dssp CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCS--SSHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCc--hhHHH
Confidence 7888888653 123468999999999764321 11236889999999999753 33444
Q ss_pred HHHHHcCccceEEEecccC-CC-hHHHHHHHhhhcCCcEE-----------------------------EEccC---CCC
Q 039491 528 EVIIMLPRHINIVLLSATV-PN-TVEFADWIGRTKQKKIR-----------------------------VTGTT---KRP 573 (1379)
Q Consensus 528 eii~~Lp~~vqiIlLSATv-pN-~~efa~wl~~~~~~~i~-----------------------------vi~t~---~Rp 573 (1379)
..+..++ ....++||||+ .| ..++...+......... +..+. ...
T Consensus 388 ~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~ 466 (800)
T 3mwy_W 388 ESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKS 466 (800)
T ss_dssp HHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTT
T ss_pred HHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhc
Confidence 4555554 34668999995 33 34655555433222111 00000 000
Q ss_pred cC-ceEEEeecCceeeeccCcccchhhHHHHHHHHHhhccccccCCCCCCCCCCCCc------ccccccccCCCCCCCCC
Q 039491 574 VP-LEHCLYYSGEFYKVCENEAFIPQGWKAAKDAYKRKNLSAASGATGSYAGASSPR------DGARAQKREHPNRGKQN 646 (1379)
Q Consensus 574 vp-Le~~l~~~~~l~~i~d~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~gr~~ 646 (1379)
.| ....+... . +. .........+.......... +......... +..-...+...... .
T Consensus 467 LP~k~~~~v~v-------~---ls-~~q~~~Y~~i~~~~~~~l~~--~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~--~ 531 (800)
T 3mwy_W 467 LPSKTERILRV-------E---LS-DVQTEYYKNILTKNYSALTA--GAKGGHFSLLNIMNELKKASNHPYLFDNAE--E 531 (800)
T ss_dssp SCCEEEEEEEE-------C---CC-HHHHHHHHHHHHHCCC------------CTHHHHHHHHHHHHHCGGGSSSHH--H
T ss_pred cCCcEEEEEEe-------C---CC-HHHHHHHHHHHHHHHHHHhh--ccccchhhHHHHHHHHHHHhcChhhhcchH--H
Confidence 11 11111110 0 00 00001111111100000000 0000000000 00000000000000 0
Q ss_pred CccccccccCCCCCCCcc------cccchhHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHH
Q 039491 647 KHSVVGIKNSGGSQNNWG------LRRSEVSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIR 720 (1379)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~ 720 (1379)
.... ..+.+...... ........+..++..+.. .+.++||||..+..++.++..|...++.
T Consensus 532 ~~~~---~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~-~g~kvLIFsq~~~~ld~L~~~L~~~g~~--------- 598 (800)
T 3mwy_W 532 RVLQ---KFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKK-DGHRVLIFSQMVRMLDILGDYLSIKGIN--------- 598 (800)
T ss_dssp HHCC---CC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCCEEEEESCHHHHHHHHHHHHHHTCC---------
T ss_pred HHHH---hcccccccHHHHHHHhhhcChHHHHHHHHHHHHhh-CCCeEEEEechHHHHHHHHHHHHhCCCC---------
Confidence 0000 00000000000 000012233444444433 4579999999999999999988654433
Q ss_pred HHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHHHHHHHhcCCCe---eEEEecccccccCCCCCceEEE
Q 039491 721 VFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKEVIEMLFCRGVV---KVLFSTETFAMGVNAPARTVVF 797 (1379)
Q Consensus 721 ~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re~Ve~lF~~G~i---kVLVATetla~GINiPa~tvVI 797 (1379)
+..+||+++..+|+.++..|+++.. .+|++|.+++.|||+|++++||
T Consensus 599 ------------------------------~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI 648 (800)
T 3mwy_W 599 ------------------------------FQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVV 648 (800)
T ss_dssp ------------------------------CEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEE
T ss_pred ------------------------------EEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEE
Confidence 4569999999999999999998654 4999999999999999999999
Q ss_pred ccccccCCcccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCCC
Q 039491 798 DNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDEI 842 (1379)
Q Consensus 798 ~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~~ 842 (1379)
. ||. +++|..+.|++|||+|.|......++.++..+.
T Consensus 649 ~----~D~----~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 649 I----FDS----DWNPQADLQAMARAHRIGQKNHVMVYRLVSKDT 685 (800)
T ss_dssp E----SSC----CSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTS
T ss_pred E----ecC----CCChhhHHHHHHHHHhcCCCceEEEEEEecCCC
Confidence 9 999 999999999999999999988888888887765
No 73
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.89 E-value=2.5e-21 Score=238.87 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=102.0
Q ss_pred hhHHHHHHHHHHHhC--CCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHh
Q 039491 669 EVSIWLTLINKLSKK--SLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSL 746 (1379)
Q Consensus 669 ~~~~~~~Li~~L~~~--~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~l 746 (1379)
...++..++..+... .+.|+||||.|+..|+.++..|.+.++..
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~---------------------------------- 501 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPH---------------------------------- 501 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCC----------------------------------
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCE----------------------------------
Confidence 445666666666542 45799999999999999999999877664
Q ss_pred hccceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCC--------CceEEEccccccCCcccccCCHHHHHH
Q 039491 747 LRRGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAP--------ARTVVFDNLRKFDGREFRQLLPGEYTQ 818 (1379)
Q Consensus 747 L~rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiP--------a~tvVI~~~~kfDg~~~rpls~~eyiQ 818 (1379)
.++||+....++..+...|+.| .|+|||++++||+|++ +..+||+ |+. |.++..|.|
T Consensus 502 -----~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVIn----te~----Pes~r~y~q 566 (822)
T 3jux_A 502 -----QVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIG----TER----HESRRIDNQ 566 (822)
T ss_dssp -----EEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEE----SSC----CSSHHHHHH
T ss_pred -----EEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEe----cCC----CCCHHHHHH
Confidence 3699997777777777788777 5999999999999998 6679999 887 999999999
Q ss_pred HhcccCCCCCCCcEEEEEEecCC
Q 039491 819 MAGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 819 maGRAGRrG~d~~G~vIil~~~~ 841 (1379)
|+|||||.|.. |.++++++.+
T Consensus 567 riGRTGRqG~~--G~a~~fvsle 587 (822)
T 3jux_A 567 LRGRAGRQGDP--GESIFFLSLE 587 (822)
T ss_dssp HHTTSSCSSCC--CEEEEEEETT
T ss_pred hhCccccCCCC--eeEEEEechh
Confidence 99999999975 9988888754
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.85 E-value=3.1e-20 Score=235.53 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=96.8
Q ss_pred CCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHH
Q 039491 685 LLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKE 764 (1379)
Q Consensus 685 ~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re 764 (1379)
+.++||||+|++.|+.++..|...++. +.++||+|++.+|.
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~gi~---------------------------------------~~~lh~~~~~~~R~ 479 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEHGIR---------------------------------------ARYLHHELDAFKRQ 479 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTCC---------------------------------------EEEECTTCCHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCC---------------------------------------ceeecCCCCHHHHH
Confidence 469999999999999999999876543 56789999999999
Q ss_pred HHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCc--ccccCCHHHHHHHhcccCCCCCCCcEEEEEEecCC
Q 039491 765 VIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGR--EFRQLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 765 ~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~--~~rpls~~eyiQmaGRAGRrG~d~~G~vIil~~~~ 841 (1379)
.++..|+.|.++|||||+++++|+|+|.+++||+ ||.. ++ |.+..+|+||+|||||.| .|.||++++..
T Consensus 480 ~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~----~d~d~~G~-p~s~~~~iQr~GRagR~~---~G~~i~~~~~~ 550 (664)
T 1c4o_A 480 ALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAI----LDADKEGF-LRSERSLIQTIGRAARNA---RGEVWLYADRV 550 (664)
T ss_dssp HHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEE----TTTTSCSG-GGSHHHHHHHHGGGTTST---TCEEEEECSSC
T ss_pred HHHHHhhcCCceEEEccChhhcCccCCCCCEEEE----eCCcccCC-CCCHHHHHHHHCccCcCC---CCEEEEEEcCC
Confidence 9999999999999999999999999999998887 5532 12 678999999999999986 49999998765
No 75
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.82 E-value=9.4e-19 Score=221.88 Aligned_cols=112 Identities=19% Similarity=0.225 Sum_probs=96.9
Q ss_pred CCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHH
Q 039491 684 SLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVK 763 (1379)
Q Consensus 684 ~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~R 763 (1379)
.+.++||||+|++.|+.++..|...++. +.++||++++.+|
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~---------------------------------------~~~lh~~~~~~~R 484 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIK---------------------------------------VNYLHSEIKTLER 484 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCC---------------------------------------EEEECTTCCHHHH
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCC---------------------------------------eEEEeCCCCHHHH
Confidence 3469999999999999999999876543 4568999999999
Q ss_pred HHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccc-cCCHHHHHHHhcccCCCCCCCcEEEEEEecCC
Q 039491 764 EVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFR-QLLPGEYTQMAGRAGRRGLDKIGTVVVLCRDE 841 (1379)
Q Consensus 764 e~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~r-pls~~eyiQmaGRAGRrG~d~~G~vIil~~~~ 841 (1379)
..++..|++|.++|||||+++++|+|+|.+++||+ +|...+- |.+...|+||+|||||.+ .|.||+++++.
T Consensus 485 ~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~----~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~ 556 (661)
T 2d7d_A 485 IEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAI----LDADKEGFLRSERSLIQTIGRAARNA---EGRVIMYADKI 556 (661)
T ss_dssp HHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEE----TTTTCCTTTTSHHHHHHHHHTTTTST---TCEEEEECSSC
T ss_pred HHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEE----eCcccccCCCCHHHHHHHhCcccCCC---CCEEEEEEeCC
Confidence 99999999999999999999999999999998887 5432111 678999999999999983 49999999765
No 76
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.82 E-value=5.4e-20 Score=199.27 Aligned_cols=149 Identities=21% Similarity=0.225 Sum_probs=110.0
Q ss_pred CCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc------CCcEEEecchHHHHHH-HHHHHhccc--
Q 039491 397 FPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH------CTRAVYTAPIKTISNQ-KYRDFSGKF-- 467 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~------~~raIylsPtkaLsnQ-k~~~~~~~f-- 467 (1379)
..++|+++|.++++.+.++++++++||||+|||++|.+++...+.. +.++||++|+++|++| +.+.+.+..
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~ 109 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 109 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc
Confidence 5678999999999999999999999999999999999988876633 6799999999999999 555565543
Q ss_pred --cEEEEecCcccCC-------CCceeeecHHHHHHHHhcCc------ccCCCccEEEEeccCCCCCcc-chhHHHHHHH
Q 039491 468 --DVGLLTGDVSLRP-------EASCLIMTTEILRSMLYRGA------DIIRDIEWVIFDEVHYVNDIE-RGVVWEEVII 531 (1379)
Q Consensus 468 --~VglltGdv~in~-------~a~IlV~TpEiL~smL~~~~------~~l~~v~lVI~DEaH~l~d~~-rG~v~eeii~ 531 (1379)
+++.++|+..... .++|+|+||+.|..++.+.. ..+.++++|||||||++.+.. ....+...+.
T Consensus 110 ~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~ 189 (216)
T 3b6e_A 110 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 189 (216)
T ss_dssp TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHHHH
T ss_pred CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHHHH
Confidence 7888999876543 37899999999999887653 457889999999999997542 2222222222
Q ss_pred Hc-------------CccceEEEeccc
Q 039491 532 ML-------------PRHINIVLLSAT 545 (1379)
Q Consensus 532 ~L-------------p~~vqiIlLSAT 545 (1379)
.. .+..++|+||||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 190 QKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HhcccccccccccCCCCcceEEEeecC
Confidence 11 156899999998
No 77
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.79 E-value=2.4e-19 Score=204.09 Aligned_cols=145 Identities=17% Similarity=0.188 Sum_probs=122.2
Q ss_pred CCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcC-CcEEEecchHHHHHHHHHHHhccc-----cEEEE
Q 039491 399 FELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHC-TRAVYTAPIKTISNQKYRDFSGKF-----DVGLL 472 (1379)
Q Consensus 399 FeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~-~raIylsPtkaLsnQk~~~~~~~f-----~Vgll 472 (1379)
++|+++|.+|+..+..+++.+++||||+|||++|..++...+..+ .++||++|+++|++|+++++++.+ .++.+
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~ 191 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKI 191 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEEC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEE
Confidence 689999999999988888899999999999999988877766554 499999999999999999998875 56777
Q ss_pred ecCcccC----CCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCC
Q 039491 473 TGDVSLR----PEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPN 548 (1379)
Q Consensus 473 tGdv~in----~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN 548 (1379)
+|+.... ...+|+|+|++.+.+ .....++++++||+||||++. +..++.++..++...++++||||++|
T Consensus 192 ~~~~~~~~~~~~~~~I~v~T~~~l~~---~~~~~~~~~~~vIiDEaH~~~----~~~~~~il~~~~~~~~~l~lSATp~~ 264 (282)
T 1rif_A 192 GGGASKDDKYKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLAT----GKSISSIISGLNNCMFKFGLSGSLRD 264 (282)
T ss_dssp STTCSSTTCCCTTCSEEEECHHHHTT---SCGGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCCEEEEECSSCCT
T ss_pred eCCCcchhhhccCCcEEEEchHHHHh---hHHHHHhhCCEEEEECCccCC----cccHHHHHHHhhcCCeEEEEeCCCCC
Confidence 7776554 568999999987743 233457889999999999997 44778888888778999999999987
Q ss_pred hH
Q 039491 549 TV 550 (1379)
Q Consensus 549 ~~ 550 (1379)
..
T Consensus 265 ~~ 266 (282)
T 1rif_A 265 GK 266 (282)
T ss_dssp TS
T ss_pred cc
Confidence 64
No 78
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.78 E-value=1.8e-18 Score=181.22 Aligned_cols=132 Identities=23% Similarity=0.346 Sum_probs=113.5
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhcc
Q 039491 670 VSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRR 749 (1379)
Q Consensus 670 ~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~r 749 (1379)
..++..|...+......++||||++++.|+.++..|...++
T Consensus 20 ~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~--------------------------------------- 60 (163)
T 2hjv_A 20 ENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGY--------------------------------------- 60 (163)
T ss_dssp GGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTC---------------------------------------
T ss_pred HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCC---------------------------------------
Confidence 34556666667666778999999999999999999976443
Q ss_pred ceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCC
Q 039491 750 GIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLD 829 (1379)
Q Consensus 750 GIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d 829 (1379)
.+..+||+|++.+|+.++..|++|.++|||||+++++|+|+|++++||+ ||. |.++.+|+||+|||||.|..
T Consensus 61 ~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~----~~~----p~~~~~~~qr~GR~~R~g~~ 132 (163)
T 2hjv_A 61 PCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVIN----YDL----PLEKESYVHRTGRTGRAGNK 132 (163)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEE----SSC----CSSHHHHHHHTTTSSCTTCC
T ss_pred cEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEE----eCC----CCCHHHHHHhccccCcCCCC
Confidence 3678999999999999999999999999999999999999999999999 998 99999999999999999975
Q ss_pred CcEEEEEEecCCCCCHHHHHHHH
Q 039491 830 KIGTVVVLCRDEIPGESDLKHII 852 (1379)
Q Consensus 830 ~~G~vIil~~~~~~~~~~l~~li 852 (1379)
|.+++++.+. +...++++.
T Consensus 133 --g~~~~~~~~~--~~~~~~~i~ 151 (163)
T 2hjv_A 133 --GKAISFVTAF--EKRFLADIE 151 (163)
T ss_dssp --EEEEEEECGG--GHHHHHHHH
T ss_pred --ceEEEEecHH--HHHHHHHHH
Confidence 9999998754 444544443
No 79
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=182.76 Aligned_cols=130 Identities=23% Similarity=0.280 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccc
Q 039491 671 SIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRG 750 (1379)
Q Consensus 671 ~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rG 750 (1379)
.++..|...+......++||||++++.|+.++..|...++ +
T Consensus 20 ~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~---------------------------------------~ 60 (175)
T 2rb4_A 20 DKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGH---------------------------------------Q 60 (175)
T ss_dssp HHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTC---------------------------------------C
T ss_pred hHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC---------------------------------------c
Confidence 3566777777777778999999999999999999976433 3
Q ss_pred eEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCccccc------CCHHHHHHHhcccC
Q 039491 751 IAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQ------LLPGEYTQMAGRAG 824 (1379)
Q Consensus 751 IavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rp------ls~~eyiQmaGRAG 824 (1379)
+..+||+|++.+|+.++..|++|.++|||||+++++|+|+|++++||+ ||. | .++.+|+||+||||
T Consensus 61 ~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~----~d~----p~~~~~~~~~~~~~qr~GR~g 132 (175)
T 2rb4_A 61 VSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVN----FDL----PVKQGEEPDYETYLHRIGRTG 132 (175)
T ss_dssp EEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEE----SSC----CC--CCSCCHHHHHHHHCBC-
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEE----eCC----CCCccccCCHHHHHHHhcccc
Confidence 778999999999999999999999999999999999999999999999 888 6 89999999999999
Q ss_pred CCCCCCcEEEEEEecCCCCCHHHHHHH
Q 039491 825 RRGLDKIGTVVVLCRDEIPGESDLKHI 851 (1379)
Q Consensus 825 RrG~d~~G~vIil~~~~~~~~~~l~~l 851 (1379)
|.|.. |.+++++.+. +...+.++
T Consensus 133 R~g~~--g~~~~~~~~~--~~~~~~~i 155 (175)
T 2rb4_A 133 RFGKK--GLAFNMIEVD--ELPSLMKI 155 (175)
T ss_dssp ---CC--EEEEEEECGG--GHHHHHHH
T ss_pred cCCCC--ceEEEEEccc--hHHHHHHH
Confidence 99965 9999998754 33444443
No 80
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=192.58 Aligned_cols=157 Identities=24% Similarity=0.261 Sum_probs=121.9
Q ss_pred CCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHH-hc----CCcEEEecchHHHHHHHHHHHhccc----
Q 039491 397 FPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALAT-KH----CTRAVYTAPIKTISNQKYRDFSGKF---- 467 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l-~~----~~raIylsPtkaLsnQk~~~~~~~f---- 467 (1379)
.++.++++|.++++.+.+|++++++||||||||+++..++.... .. +.+++|++|+++|+.|.++.+...+
T Consensus 58 ~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~ 137 (235)
T 3llm_A 58 ELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEP 137 (235)
T ss_dssp HTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCT
T ss_pred hcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcccc
Confidence 35567899999999999999999999999999988777766654 22 3489999999999999999998766
Q ss_pred --cEEEEecCccc--CCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCC-CCccch-hHHHHHHHHcCccceEEE
Q 039491 468 --DVGLLTGDVSL--RPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYV-NDIERG-VVWEEVIIMLPRHINIVL 541 (1379)
Q Consensus 468 --~VglltGdv~i--n~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l-~d~~rG-~v~eeii~~Lp~~vqiIl 541 (1379)
.+|.-...... ...++|+|+||++|.+++.+ .++++++||+||||.+ .+.++. ..+..++... ++.|+++
T Consensus 138 ~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~il 213 (235)
T 3llm_A 138 GKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRIVL 213 (235)
T ss_dssp TSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEEE
T ss_pred CceEEEeechhhccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeEEE
Confidence 34443322222 25688999999999999876 3889999999999985 443333 2344444444 4689999
Q ss_pred ecccCCChHHHHHHHhh
Q 039491 542 LSATVPNTVEFADWIGR 558 (1379)
Q Consensus 542 LSATvpN~~efa~wl~~ 558 (1379)
||||+++.. |++|++.
T Consensus 214 ~SAT~~~~~-~~~~~~~ 229 (235)
T 3llm_A 214 MSATIDTSM-FCEYFFN 229 (235)
T ss_dssp EECSSCCHH-HHHHTTS
T ss_pred EecCCCHHH-HHHHcCC
Confidence 999999877 8999873
No 81
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.77 E-value=4.8e-17 Score=204.23 Aligned_cols=123 Identities=19% Similarity=0.158 Sum_probs=106.1
Q ss_pred hccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-----c
Q 039491 394 ALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-----D 468 (1379)
Q Consensus 394 a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-----~ 468 (1379)
.+.++|.|+++|..+++.+.+|+ ++.|.||+|||++|.+|++.....+..+++++||+.||.|.+..+...+ +
T Consensus 73 ~R~lG~~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLs 150 (997)
T 2ipc_A 73 KRYLGMRHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLS 150 (997)
T ss_dssp HHHTCCCCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHhCCCCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCe
Confidence 34589999999999999999998 9999999999999999997655577899999999999999998888765 8
Q ss_pred EEEEecCcccC-----CCCceeeecHHHH-HHHHhcCc------ccCC---CccEEEEeccCCCC
Q 039491 469 VGLLTGDVSLR-----PEASCLIMTTEIL-RSMLYRGA------DIIR---DIEWVIFDEVHYVN 518 (1379)
Q Consensus 469 VglltGdv~in-----~~a~IlV~TpEiL-~smL~~~~------~~l~---~v~lVI~DEaH~l~ 518 (1379)
|++++|+.+.. ..++|+|+||+.| .++|..+. ..++ .+.++|+||||.|.
T Consensus 151 v~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 151 VGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp EEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred EEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 99999987632 2479999999999 77777652 3567 89999999999976
No 82
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.76 E-value=1.8e-18 Score=183.10 Aligned_cols=123 Identities=23% Similarity=0.264 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhcc
Q 039491 670 VSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRR 749 (1379)
Q Consensus 670 ~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~r 749 (1379)
..+...|...+......++||||++++.|+.++..|...++
T Consensus 16 ~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~--------------------------------------- 56 (172)
T 1t5i_A 16 NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNF--------------------------------------- 56 (172)
T ss_dssp GGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTC---------------------------------------
T ss_pred HHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCC---------------------------------------
Confidence 34566677777777778999999999999999999976433
Q ss_pred ceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCC
Q 039491 750 GIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLD 829 (1379)
Q Consensus 750 GIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d 829 (1379)
++..+||+|++.+|+.++..|++|.++|||||+++++|+|+|++++||+ ||. |.++.+|+||+|||||.|..
T Consensus 57 ~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~----~d~----p~~~~~~~qr~GR~~R~g~~ 128 (172)
T 1t5i_A 57 PAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN----YDM----PEDSDTYLHRVARAGRFGTK 128 (172)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE----SSC----CSSHHHHHHHHHHHTGGGCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEE----ECC----CCCHHHHHHHhcccccCCCC
Confidence 3678999999999999999999999999999999999999999999999 999 99999999999999999965
Q ss_pred CcEEEEEEecCC
Q 039491 830 KIGTVVVLCRDE 841 (1379)
Q Consensus 830 ~~G~vIil~~~~ 841 (1379)
|.+++++.+.
T Consensus 129 --g~~~~~~~~~ 138 (172)
T 1t5i_A 129 --GLAITFVSDE 138 (172)
T ss_dssp --CEEEEEECSH
T ss_pred --cEEEEEEcCh
Confidence 9999998653
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.76 E-value=3.9e-18 Score=186.62 Aligned_cols=131 Identities=24% Similarity=0.317 Sum_probs=111.0
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhcc
Q 039491 670 VSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRR 749 (1379)
Q Consensus 670 ~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~r 749 (1379)
..++..+.+.+......++||||++++.|+.++..|...+ .
T Consensus 16 ~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---------------------------------------~ 56 (212)
T 3eaq_A 16 RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG---------------------------------------H 56 (212)
T ss_dssp TSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHT---------------------------------------C
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC---------------------------------------C
Confidence 3455666666666667899999999999999999986533 2
Q ss_pred ceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCC
Q 039491 750 GIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLD 829 (1379)
Q Consensus 750 GIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d 829 (1379)
++.++||+|++.+|+.++..|++|.++|||||+++++|+|+|++++||+ ||. |.++..|+||+|||||.|..
T Consensus 57 ~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~----~~~----p~~~~~~~qr~GR~gR~g~~ 128 (212)
T 3eaq_A 57 PAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVH----YRL----PDRAEAYQHRSGRTGRAGRG 128 (212)
T ss_dssp CEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEE----SSC----CSSHHHHHHHHTTBCCCC--
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEE----CCC----CcCHHHHHHHhcccCCCCCC
Confidence 3678999999999999999999999999999999999999999999999 998 99999999999999999965
Q ss_pred CcEEEEEEecCCCCCHHHHHHH
Q 039491 830 KIGTVVVLCRDEIPGESDLKHI 851 (1379)
Q Consensus 830 ~~G~vIil~~~~~~~~~~l~~l 851 (1379)
|.|++++++. +...++.+
T Consensus 129 --g~~~~l~~~~--~~~~~~~i 146 (212)
T 3eaq_A 129 --GRVVLLYGPR--ERRDVEAL 146 (212)
T ss_dssp --BEEEEEECGG--GHHHHHHH
T ss_pred --CeEEEEEchh--HHHHHHHH
Confidence 9999999764 33444433
No 84
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.75 E-value=5.4e-18 Score=177.82 Aligned_cols=129 Identities=20% Similarity=0.368 Sum_probs=107.5
Q ss_pred HHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccce
Q 039491 672 IWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGI 751 (1379)
Q Consensus 672 ~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGI 751 (1379)
+...|...+......++||||++++.|+.++..|...++ ++
T Consensus 17 K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~---------------------------------------~~ 57 (165)
T 1fuk_A 17 KYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKF---------------------------------------TV 57 (165)
T ss_dssp HHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTC---------------------------------------CE
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC---------------------------------------CE
Confidence 455666666666778999999999999999999976432 36
Q ss_pred EEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCc
Q 039491 752 AIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKI 831 (1379)
Q Consensus 752 avhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~ 831 (1379)
..+||+|++.+|+.++..|++|.++|||||+++++|+|+|++++||+ ||. |.++.+|+||+|||||.|..
T Consensus 58 ~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~----~~~----p~~~~~~~qr~GR~gR~g~~-- 127 (165)
T 1fuk_A 58 SAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN----YDL----PANKENYIHRIGRGGRFGRK-- 127 (165)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEE----SSC----CSSGGGGGGSSCSCC-------
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEE----eCC----CCCHHHHHHHhcccccCCCC--
Confidence 78999999999999999999999999999999999999999999999 998 89999999999999999964
Q ss_pred EEEEEEecCCCCCHHHHHHH
Q 039491 832 GTVVVLCRDEIPGESDLKHI 851 (1379)
Q Consensus 832 G~vIil~~~~~~~~~~l~~l 851 (1379)
|.|++++.++ +...+.++
T Consensus 128 g~~~~~~~~~--~~~~~~~~ 145 (165)
T 1fuk_A 128 GVAINFVTNE--DVGAMREL 145 (165)
T ss_dssp CEEEEEEETT--THHHHHHH
T ss_pred ceEEEEEcch--HHHHHHHH
Confidence 8999988765 44444443
No 85
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.75 E-value=2.7e-17 Score=204.22 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=87.0
Q ss_pred CCCCCCHHHHHHHHH----HHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEE
Q 039491 397 FPFELDNFQKEAIYY----LENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGL 471 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~----L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~Vgl 471 (1379)
.+|+++++|.+++.. +..|+++++.||||+|||++|++++.. .+.+++|++||++|+.|.++++.... ++.+
T Consensus 4 ~~~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~---~~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~ 80 (540)
T 2vl7_A 4 LKLQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQ---LKKKVLIFTRTHSQLDSIYKNAKLLGLKTGF 80 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHH---HTCEEEEEESCHHHHHHHHHHHGGGTCCEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHh---CCCcEEEEcCCHHHHHHHHHHHHhcCCcEEE
Confidence 468899999998654 578999999999999999998888643 57899999999999999999998753 5555
Q ss_pred EecCcc------------------------------------------------------cCCCCceeeecHHHHHHHHh
Q 039491 472 LTGDVS------------------------------------------------------LRPEASCLIMTTEILRSMLY 497 (1379)
Q Consensus 472 ltGdv~------------------------------------------------------in~~a~IlV~TpEiL~smL~ 497 (1379)
+.|-.. .-..++|+|+|+..|.+...
T Consensus 81 l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~ 160 (540)
T 2vl7_A 81 LIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPI 160 (540)
T ss_dssp C---------------------------------------------------------CTTGGGCSEEEEETHHHHSHHH
T ss_pred ecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHHH
Confidence 444211 01246999999999876443
Q ss_pred cCc-------ccCCCccEEEEeccCCCC
Q 039491 498 RGA-------DIIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 498 ~~~-------~~l~~v~lVI~DEaH~l~ 518 (1379)
++. ..+.+..+|||||||.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 161 RNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp HHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred HHhhCcccccccCcCCCEEEEEccccHH
Confidence 321 135678899999999994
No 86
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.74 E-value=1.4e-17 Score=185.42 Aligned_cols=141 Identities=21% Similarity=0.185 Sum_probs=115.2
Q ss_pred cCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc--c-EEEE
Q 039491 396 DFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF--D-VGLL 472 (1379)
Q Consensus 396 ~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f--~-Vgll 472 (1379)
.++++|+++|.+|+..+.+++++++++|||+|||++|..++... +.+++|++|+++|++|+++.+.+ | . ++.+
T Consensus 89 ~~~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~-~~~~~v~~~ 164 (237)
T 2fz4_A 89 DAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI-FGEEYVGEF 164 (237)
T ss_dssp CCCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGG-GCGGGEEEE
T ss_pred cCCCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh-CCCCeEEEE
Confidence 35678999999999999998899999999999999987766543 78899999999999999999999 6 6 9999
Q ss_pred ecCcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChH
Q 039491 473 TGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTV 550 (1379)
Q Consensus 473 tGdv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~ 550 (1379)
+|+.. ...+|+|+|++.+...... ...++++|||||||++.+.. ++.++..++ ..++++||||+++..
T Consensus 165 ~g~~~--~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~----~~~i~~~~~-~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 165 SGRIK--ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAES----YVQIAQMSI-APFRLGLTATFERED 232 (237)
T ss_dssp SSSCB--CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTT----HHHHHHTCC-CSEEEEEEESCC---
T ss_pred eCCCC--CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChH----HHHHHHhcc-CCEEEEEecCCCCCC
Confidence 99876 4578999999988765432 23568999999999998643 455666665 578899999987654
No 87
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=179.12 Aligned_cols=123 Identities=21% Similarity=0.193 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHhC-CCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhc
Q 039491 670 VSIWLTLINKLSKK-SLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLR 748 (1379)
Q Consensus 670 ~~~~~~Li~~L~~~-~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~ 748 (1379)
..++..|++.+... ...++||||++++.|+.++..|...++
T Consensus 30 ~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~-------------------------------------- 71 (185)
T 2jgn_A 30 SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-------------------------------------- 71 (185)
T ss_dssp GGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTC--------------------------------------
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCC--------------------------------------
Confidence 34555666666665 467999999999999999999976432
Q ss_pred cceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCC
Q 039491 749 RGIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGL 828 (1379)
Q Consensus 749 rGIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~ 828 (1379)
++..+||+|++.+|+.++..|++|.++|||||+++++|+|+|++++||+ ||. |.++.+|+||+|||||.|.
T Consensus 72 -~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~----~d~----p~s~~~~~Qr~GR~~R~g~ 142 (185)
T 2jgn_A 72 -ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN----FDL----PSDIEEYVHRIGRTGRVGN 142 (185)
T ss_dssp -CEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEE----SSC----CSSHHHHHHHHTTBCCTTS
T ss_pred -ceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEE----eCC----CCCHHHHHHHccccCCCCC
Confidence 3678999999999999999999999999999999999999999999999 999 9999999999999999996
Q ss_pred CCcEEEEEEecCC
Q 039491 829 DKIGTVVVLCRDE 841 (1379)
Q Consensus 829 d~~G~vIil~~~~ 841 (1379)
. |.|++++++.
T Consensus 143 ~--g~~~~~~~~~ 153 (185)
T 2jgn_A 143 L--GLATSFFNER 153 (185)
T ss_dssp C--EEEEEEECGG
T ss_pred C--cEEEEEEchh
Confidence 5 9999998754
No 88
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.73 E-value=2.4e-17 Score=177.66 Aligned_cols=122 Identities=22% Similarity=0.256 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhcc
Q 039491 670 VSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRR 749 (1379)
Q Consensus 670 ~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~r 749 (1379)
..+...|++.+... ..++||||++++.|+.++..|...++
T Consensus 40 ~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~--------------------------------------- 79 (191)
T 2p6n_A 40 EAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGV--------------------------------------- 79 (191)
T ss_dssp GGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTC---------------------------------------
T ss_pred HHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCC---------------------------------------
Confidence 34566677777654 46899999999999999999865332
Q ss_pred ceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCC
Q 039491 750 GIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLD 829 (1379)
Q Consensus 750 GIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d 829 (1379)
.+..+||+|++.+|+.++..|++|.++|||||+++++|+|+|++++||+ ||. |.++.+|+||+|||||.|..
T Consensus 80 ~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~d~----p~~~~~~~qr~GR~gR~g~~ 151 (191)
T 2p6n_A 80 EAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVIN----YDM----PEEIENYVHRIGRTGCSGNT 151 (191)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEE----SSC----CSSHHHHHHHHTTSCC---C
T ss_pred cEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEE----eCC----CCCHHHHHHHhCccccCCCC
Confidence 3677999999999999999999999999999999999999999999999 999 99999999999999999975
Q ss_pred CcEEEEEEecCC
Q 039491 830 KIGTVVVLCRDE 841 (1379)
Q Consensus 830 ~~G~vIil~~~~ 841 (1379)
|.+++++++.
T Consensus 152 --g~~i~l~~~~ 161 (191)
T 2p6n_A 152 --GIATTFINKA 161 (191)
T ss_dssp --CEEEEEECTT
T ss_pred --cEEEEEEcCc
Confidence 8999988764
No 89
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.72 E-value=3.2e-17 Score=188.61 Aligned_cols=129 Identities=23% Similarity=0.315 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccc
Q 039491 671 SIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRG 750 (1379)
Q Consensus 671 ~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rG 750 (1379)
.++..+.+.+......++||||++++.|+.++..|...++ .
T Consensus 14 ~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~---------------------------------------~ 54 (300)
T 3i32_A 14 GRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGH---------------------------------------P 54 (300)
T ss_dssp SHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTC---------------------------------------C
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCC---------------------------------------C
Confidence 3455566666665678999999999999999999976443 3
Q ss_pred eEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCC
Q 039491 751 IAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDK 830 (1379)
Q Consensus 751 IavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~ 830 (1379)
+..+||+|++.+|+.++..|++|.++|||||+++++|+|+|++++||+ ||. |.++..|+||+|||||.|..
T Consensus 55 ~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~----~d~----p~s~~~y~Qr~GRagR~g~~- 125 (300)
T 3i32_A 55 AQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVH----YRM----PDRAEAYQHRSGRTGRAGRG- 125 (300)
T ss_dssp EEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEE----SSC----CSSTTHHHHHHTCCC------
T ss_pred EEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEE----cCC----CCCHHHHHHHccCcCcCCCC-
Confidence 678999999999999999999999999999999999999999999999 998 89999999999999999975
Q ss_pred cEEEEEEecCCCCCHHHHHH
Q 039491 831 IGTVVVLCRDEIPGESDLKH 850 (1379)
Q Consensus 831 ~G~vIil~~~~~~~~~~l~~ 850 (1379)
|.|++++++. +...++.
T Consensus 126 -G~~i~l~~~~--e~~~~~~ 142 (300)
T 3i32_A 126 -GRVVLLYGPR--ERRDVEA 142 (300)
T ss_dssp -CEEEEEECSS--THHHHHH
T ss_pred -ceEEEEeChH--HHHHHHH
Confidence 9999999765 3444433
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.67 E-value=1.9e-15 Score=188.21 Aligned_cols=119 Identities=20% Similarity=0.167 Sum_probs=96.5
Q ss_pred CCCCCHHHHHHHHH----HHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-----c
Q 039491 398 PFELDNFQKEAIYY----LENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-----D 468 (1379)
Q Consensus 398 pFeL~~~Q~eAI~~----L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-----~ 468 (1379)
+|+++|.|.+++.. +..|+++++.||||+|||++|+++++. .+.+++|++||++|+.|..+++.... +
T Consensus 1 ~~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~ 77 (551)
T 3crv_A 1 MVKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---VKPKVLFVVRTHNEFYPIYRDLTKIREKRNIT 77 (551)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCcc
Confidence 47899999997764 568999999999999999999999877 67899999999999999999998762 6
Q ss_pred EEEEecCccc----------------------------------------------------------CCCCceeeecHH
Q 039491 469 VGLLTGDVSL----------------------------------------------------------RPEASCLIMTTE 490 (1379)
Q Consensus 469 VglltGdv~i----------------------------------------------------------n~~a~IlV~TpE 490 (1379)
+.+++|...+ ...++|+|+|+.
T Consensus 78 ~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~ 157 (551)
T 3crv_A 78 FSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYP 157 (551)
T ss_dssp EEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETH
T ss_pred EEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCch
Confidence 6777763221 125799999999
Q ss_pred HHHHHHhcCcc-cCCCccEEEEeccCCCCC
Q 039491 491 ILRSMLYRGAD-IIRDIEWVIFDEVHYVND 519 (1379)
Q Consensus 491 iL~smL~~~~~-~l~~v~lVI~DEaH~l~d 519 (1379)
.|.+...+... ...+..+|||||||.+.+
T Consensus 158 ~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 158 YFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred HhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99877555432 224778999999999987
No 91
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.49 E-value=4.4e-18 Score=179.51 Aligned_cols=121 Identities=21% Similarity=0.298 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccce
Q 039491 672 IWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGI 751 (1379)
Q Consensus 672 ~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGI 751 (1379)
+...|...+......++||||++++.|+.++..|...++ ++
T Consensus 17 k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~---------------------------------------~~ 57 (170)
T 2yjt_D 17 KTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGI---------------------------------------NN 57 (170)
Confidence 344455555555667999999999999999999876432 25
Q ss_pred EEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCCCc
Q 039491 752 AIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKI 831 (1379)
Q Consensus 752 avhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d~~ 831 (1379)
..+||+|++.+|+.++..|++|.++|||||+++++|+|+|++++||+ ||. |.++.+|+||+|||||.|..
T Consensus 58 ~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~----~~~----p~~~~~~~qr~GR~~R~g~~-- 127 (170)
T 2yjt_D 58 CYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFN----FDM----PRSGDTYLHRIGRTARAGRK-- 127 (170)
Confidence 57999999999999999999999999999999999999999999999 998 89999999999999999965
Q ss_pred EEEEEEecCC
Q 039491 832 GTVVVLCRDE 841 (1379)
Q Consensus 832 G~vIil~~~~ 841 (1379)
|.+++++.+.
T Consensus 128 g~~~~~~~~~ 137 (170)
T 2yjt_D 128 GTAISLVEAH 137 (170)
Confidence 8898888654
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.50 E-value=4.1e-13 Score=169.05 Aligned_cols=68 Identities=21% Similarity=0.298 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHHH----HHCCCcEEEEcCCCccHHHHHHHHHHHHH-hcCCcEEEecchHHHHHHHHHHHhcc
Q 039491 399 FELDNFQKEAIYY----LENGDSVFVAAHTSAGKTVVAEYAFALAT-KHCTRAVYTAPIKTISNQKYRDFSGK 466 (1379)
Q Consensus 399 FeL~~~Q~eAI~~----L~~g~sVlV~ApTGSGKTlvae~aI~~~l-~~~~raIylsPtkaLsnQk~~~~~~~ 466 (1379)
|+|++.|++.+.. +.+|+++++.||||+|||++|+++++..+ ..+.+++|++||++|+.|..+++...
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHH
Confidence 6899999998864 57899999999999999999999988776 45789999999999999999988764
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.33 E-value=2.6e-12 Score=145.80 Aligned_cols=122 Identities=17% Similarity=0.126 Sum_probs=89.2
Q ss_pred HHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcC-CCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccce
Q 039491 673 WLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGI-DLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGI 751 (1379)
Q Consensus 673 ~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~-~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGI 751 (1379)
+..++..+.. .+.++||||.++..++.++..|... ++. +
T Consensus 101 L~~ll~~~~~-~~~kvlIFs~~~~~~~~l~~~L~~~~g~~---------------------------------------~ 140 (271)
T 1z5z_A 101 TMEIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKELNTE---------------------------------------V 140 (271)
T ss_dssp HHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHHHHHHCSC---------------------------------------C
T ss_pred HHHHHHHHHh-CCCeEEEEeccHHHHHHHHHHHHHhcCCc---------------------------------------E
Confidence 3344444433 4589999999999999999988652 332 4
Q ss_pred EEecCCCChHHHHHHHHHhcCC-Cee-EEEecccccccCCCCCceEEEccccccCCcccccCCHHHHHHHhcccCCCCCC
Q 039491 752 AIHHAGLLPIVKEVIEMLFCRG-VVK-VLFSTETFAMGVNAPARTVVFDNLRKFDGREFRQLLPGEYTQMAGRAGRRGLD 829 (1379)
Q Consensus 752 avhHggL~~~~Re~Ve~lF~~G-~ik-VLVATetla~GINiPa~tvVI~~~~kfDg~~~rpls~~eyiQmaGRAGRrG~d 829 (1379)
..+||++++.+|+.++..|++| .++ +|++|+++++|+|++++++||+ ||. |++|..|.|++||++|.|..
T Consensus 141 ~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~----~d~----~wnp~~~~Q~~gR~~R~Gq~ 212 (271)
T 1z5z_A 141 PFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH----FDR----WWNPAVEDQATDRVYRIGQT 212 (271)
T ss_dssp CEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEE----CSC----CSCTTTC-------------
T ss_pred EEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEE----ECC----CCChhHHHHHHHhccccCCC
Confidence 4699999999999999999998 777 7999999999999999999999 999 99999999999999999988
Q ss_pred CcEEEEEEecCCC
Q 039491 830 KIGTVVVLCRDEI 842 (1379)
Q Consensus 830 ~~G~vIil~~~~~ 842 (1379)
....++.++..+.
T Consensus 213 ~~v~v~~li~~~T 225 (271)
T 1z5z_A 213 RNVIVHKLISVGT 225 (271)
T ss_dssp -CCEEEEEEETTS
T ss_pred CceEEEEEeeCCC
Confidence 6677777777654
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.34 E-value=1.1e-06 Score=110.66 Aligned_cols=137 Identities=15% Similarity=0.153 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHCCCcEEEEcCCCccHHHHHH--HHHHHHH--hcCCcEEEecchHHHHHHHHHHHhccc-cEEEEecC-
Q 039491 402 DNFQKEAIYYLENGDSVFVAAHTSAGKTVVAE--YAFALAT--KHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGD- 475 (1379)
Q Consensus 402 ~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae--~aI~~~l--~~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGd- 475 (1379)
++.|++|+..+..++.+++.|++|+|||.+.. ++++..+ ..+.++++++||..++.+..+.+.... ..++-...
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~~ 230 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK 230 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 68999999999999999999999999996543 3333333 345799999999999999887776533 22110000
Q ss_pred cccCCC----CceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecc
Q 039491 476 VSLRPE----ASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSA 544 (1379)
Q Consensus 476 v~in~~----a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSA 544 (1379)
..+..+ ..++-.+++.. .+.+.. .....+++||+|||+++. ...++.++..+|.+.|+|++-=
T Consensus 231 ~~~~~~~~Tih~ll~~~~~~~-~~~~~~-~~~l~~d~lIIDEAsml~----~~~~~~Ll~~l~~~~~liLvGD 297 (608)
T 1w36_D 231 KRIPEDASTLHRLLGAQPGSQ-RLRHHA-GNPLHLDVLVVDEASMID----LPMMSRLIDALPDHARVIFLGD 297 (608)
T ss_dssp CSCSCCCBTTTSCC------------CT-TSCCSCSEEEECSGGGCB----HHHHHHHHHTCCTTCEEEEEEC
T ss_pred hccchhhhhhHhhhccCCCch-HHHhcc-CCCCCCCEEEEechhhCC----HHHHHHHHHhCCCCCEEEEEcc
Confidence 000001 12222233321 111121 222378999999999664 4456778888888888888753
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.10 E-value=1e-05 Score=100.95 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=86.7
Q ss_pred CCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcc
Q 039491 398 PFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVS 477 (1379)
Q Consensus 398 pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~ 477 (1379)
++.|++.|++|+..+..+..++|.|+.|+|||.+....+......+.++++++||...+....+.....
T Consensus 187 ~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~----------- 255 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRT----------- 255 (574)
T ss_dssp TTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSC-----------
T ss_pred cCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhccc-----------
Confidence 678999999999999999999999999999998765555555567899999999998887765544211
Q ss_pred cCCCCceeeecHHHHHHH----HhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEec
Q 039491 478 LRPEASCLIMTTEILRSM----LYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLS 543 (1379)
Q Consensus 478 in~~a~IlV~TpEiL~sm----L~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLS 543 (1379)
..|...+... ...........++||+||++++. ...+..++..++...++|++-
T Consensus 256 --------a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~lilvG 313 (574)
T 3e1s_A 256 --------ASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARVLLVG 313 (574)
T ss_dssp --------EEEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEEEEE
T ss_pred --------HHHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEEEEe
Confidence 1222222110 01112233468999999999886 345666777777777776653
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.00 E-value=2.3e-05 Score=95.23 Aligned_cols=131 Identities=13% Similarity=0.172 Sum_probs=83.3
Q ss_pred CCCC-CCHHHHHHHHHHHC----CC-cEEEEcCCCccHHHHHHHHHHHHHhcCC-cEEEecchHHHHHHHHHHHhccccE
Q 039491 397 FPFE-LDNFQKEAIYYLEN----GD-SVFVAAHTSAGKTVVAEYAFALATKHCT-RAVYTAPIKTISNQKYRDFSGKFDV 469 (1379)
Q Consensus 397 ~pFe-L~~~Q~eAI~~L~~----g~-sVlV~ApTGSGKTlvae~aI~~~l~~~~-raIylsPtkaLsnQk~~~~~~~f~V 469 (1379)
.+|. |++-|++|+..+.. ++ .++|.|+.|+|||.++...+......+. ++++++||...+......+... +
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~--~ 98 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKE--A 98 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSC--E
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccc--h
Confidence 5677 99999999997632 23 8999999999999987666655556665 7999999988877665544211 1
Q ss_pred EEEecCcc----cCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEec
Q 039491 470 GLLTGDVS----LRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLS 543 (1379)
Q Consensus 470 glltGdv~----in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLS 543 (1379)
+.++.-.. .......+.. .....+...++||+||+|.+. ...+..++..++...+++++-
T Consensus 99 ~T~h~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~iiiDE~~~~~----~~~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 99 STIHSILKINPVTYEENVLFEQ----------KEVPDLAKCRVLICDEVSMYD----RKLFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp EEHHHHHTEEEEECSSCEEEEE----------CSCCCCSSCSEEEESCGGGCC----HHHHHHHHHHSCTTCEEEEEE
T ss_pred hhHHHHhccCcccccccchhcc----------cccccccCCCEEEEECchhCC----HHHHHHHHHhccCCCEEEEEC
Confidence 11000000 0000000000 122345678999999999875 345666677777666666654
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.67 E-value=4.9e-05 Score=96.34 Aligned_cols=68 Identities=19% Similarity=0.175 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHCC-CcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc
Q 039491 400 ELDNFQKEAIYYLENG-DSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF 467 (1379)
Q Consensus 400 eL~~~Q~eAI~~L~~g-~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f 467 (1379)
.|++-|++||..++.. .-.+|.||.|+|||.+....|...++++.++++++||..-+.+..+++....
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcC
Confidence 4899999999987654 4678999999999998888888888999999999999999999988886544
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.59 E-value=0.00028 Score=89.04 Aligned_cols=68 Identities=15% Similarity=0.090 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh-cCCcEEEecchHHHHHHHHHHHhccc
Q 039491 400 ELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK-HCTRAVYTAPIKTISNQKYRDFSGKF 467 (1379)
Q Consensus 400 eL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~-~~~raIylsPtkaLsnQk~~~~~~~f 467 (1379)
.|++.|++|+..+..+..++|.||+|+|||.+....+...+. .+.++++++||...+.+..+.+.+..
T Consensus 180 ~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~ 248 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG 248 (624)
T ss_dssp CCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcC
Confidence 489999999999888888999999999999887666666555 67899999999999999998887643
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.00014 Score=94.08 Aligned_cols=68 Identities=18% Similarity=0.164 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh-cCCcEEEecchHHHHHHHHHHHhccc
Q 039491 400 ELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK-HCTRAVYTAPIKTISNQKYRDFSGKF 467 (1379)
Q Consensus 400 eL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~-~~~raIylsPtkaLsnQk~~~~~~~f 467 (1379)
.|++.|++|+..+..+..++|.||.|+|||.+....+...+. .+.++++++||...+.+..+++.+..
T Consensus 360 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp CCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 389999999999988878899999999999887666665555 68899999999999999998887653
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.40 E-value=0.00058 Score=88.27 Aligned_cols=68 Identities=15% Similarity=0.090 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh-cCCcEEEecchHHHHHHHHHHHhccc
Q 039491 400 ELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK-HCTRAVYTAPIKTISNQKYRDFSGKF 467 (1379)
Q Consensus 400 eL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~-~~~raIylsPtkaLsnQk~~~~~~~f 467 (1379)
.|++.|++|+..+..+..++|.||+|+|||.+....+...+. .+.++++++||...+.+..+.+.+..
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g 424 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG 424 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhC
Confidence 489999999999888888999999999999886655555555 67899999999999999988887653
No 101
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.04 E-value=0.0052 Score=72.72 Aligned_cols=147 Identities=12% Similarity=0.193 Sum_probs=89.9
Q ss_pred CCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHH-HHH-hcCCcEEEecchHHHHHHHHHHHhccc-c-----
Q 039491 397 FPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFA-LAT-KHCTRAVYTAPIKTISNQKYRDFSGKF-D----- 468 (1379)
Q Consensus 397 ~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~-~~l-~~~~raIylsPtkaLsnQk~~~~~~~f-~----- 468 (1379)
.||.|+|||+..+..+...+-+++..+-+.|||.++...++ .++ ..+.+++|++|++.-+...++.++..+ .
T Consensus 160 ~p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll 239 (385)
T 2o0j_A 160 IKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFL 239 (385)
T ss_dssp EECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTT
T ss_pred CCCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhh
Confidence 68999999999999876556789999999999986443333 233 346789999999999988887776544 1
Q ss_pred ---EEEEec-CcccCCCCceeee--cHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcC--ccceEE
Q 039491 469 ---VGLLTG-DVSLRPEASCLIM--TTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLP--RHINIV 540 (1379)
Q Consensus 469 ---VglltG-dv~in~~a~IlV~--TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp--~~vqiI 540 (1379)
+.-.+. .......+.+.+. +++.++. ..+.++|+||+|.+.+. ...|+.+...+. .+.+++
T Consensus 240 ~~~~~~~~~~~I~f~nGs~i~~lsa~~~slrG---------~~~~~viiDE~a~~~~~--~el~~al~~~ls~~~~~kii 308 (385)
T 2o0j_A 240 QPGIVEWNKGSIELDNGSSIGAYASSPDAVRG---------NSFAMIYIEDCAFIPNF--HDSWLAIQPVISSGRRSKII 308 (385)
T ss_dssp SCCEEEECSSEEEETTSCEEEEEECSHHHHHT---------SCCSEEEEESGGGSTTH--HHHHHHHHHHHHSTTCCEEE
T ss_pred hhhhccCCccEEEeCCCCEEEEEECCCCCccC---------CCCCEEEechhhhcCCC--HHHHHHHHHHhhcCCCCcEE
Confidence 111111 0111112333333 3444432 24689999999988752 345555544432 234544
Q ss_pred Ee-cccCCChHHHHHHH
Q 039491 541 LL-SATVPNTVEFADWI 556 (1379)
Q Consensus 541 lL-SATvpN~~efa~wl 556 (1379)
.. |++-.| .|.+..
T Consensus 309 iiSTP~g~n--~fy~l~ 323 (385)
T 2o0j_A 309 ITTTPNGLN--HFYDIW 323 (385)
T ss_dssp EEECCCSSS--HHHHHH
T ss_pred EEeCCCCch--hHHHHH
Confidence 44 444333 444443
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.92 E-value=0.003 Score=79.52 Aligned_cols=65 Identities=17% Similarity=0.097 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcC----CcEEEecchHHHHHHHHHHHhcc
Q 039491 400 ELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHC----TRAVYTAPIKTISNQKYRDFSGK 466 (1379)
Q Consensus 400 eL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~----~raIylsPtkaLsnQk~~~~~~~ 466 (1379)
.|++-|++|+.+ .+..++|.|+.|||||.+...-|+..+..+ .+++++++|+..+.+..+++.+.
T Consensus 9 ~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 9 SLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 489999999973 356899999999999998877777777543 68999999999999998888765
No 103
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.88 E-value=0.0058 Score=76.51 Aligned_cols=137 Identities=10% Similarity=0.174 Sum_probs=87.9
Q ss_pred cCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHH-HHHHHHHh-cCCcEEEecchHHHHHHHHHHHhccc-cE---
Q 039491 396 DFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAE-YAFALATK-HCTRAVYTAPIKTISNQKYRDFSGKF-DV--- 469 (1379)
Q Consensus 396 ~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae-~aI~~~l~-~~~raIylsPtkaLsnQk~~~~~~~f-~V--- 469 (1379)
..||+|+|+|+..+..+...+.+++.++-++|||.+.. +++..++. .+.++++++|++..+...+..++..+ ..
T Consensus 159 ~~~~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~ 238 (592)
T 3cpe_A 159 VIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDF 238 (592)
T ss_dssp SBBCCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCTT
T ss_pred cccCcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChHh
Confidence 36899999999999888556779999999999998643 33444443 35689999999999999888777654 11
Q ss_pred ---EEE-ecCc--ccCCCCceee--ecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCc--cceE
Q 039491 470 ---GLL-TGDV--SLRPEASCLI--MTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPR--HINI 539 (1379)
Q Consensus 470 ---gll-tGdv--~in~~a~IlV--~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~--~vqi 539 (1379)
+.. .... .....+.+.+ ..|+.++.. ..+++|+||+|.+.+. ...|+.+...+.. +.++
T Consensus 239 ~~~~~~~~~~~~i~~~nGs~i~~~s~~~~~lrG~---------~~~~~iiDE~~~~~~~--~~l~~~~~~~l~~~~~~~i 307 (592)
T 3cpe_A 239 LQPGIVEWNKGSIELDNGSSIGAYASSPDAVRGN---------SFAMIYIEDCAFIPNF--HDSWLAIQPVISSGRRSKI 307 (592)
T ss_dssp TSCCEEEECSSEEEETTSCEEEEEECCHHHHHHS---------CCSEEEEETGGGCTTH--HHHHHHHHHHHSSSSCCEE
T ss_pred hccccccCCccEEEecCCCEEEEEeCCCCCccCC---------CcceEEEehhccCCch--hHHHHHHHHHhccCCCceE
Confidence 111 0111 1111233332 235555442 3679999999988653 2566655545532 3454
Q ss_pred EEec
Q 039491 540 VLLS 543 (1379)
Q Consensus 540 IlLS 543 (1379)
+..|
T Consensus 308 i~is 311 (592)
T 3cpe_A 308 IITT 311 (592)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4444
No 104
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.63 E-value=0.018 Score=60.16 Aligned_cols=119 Identities=10% Similarity=0.072 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHH---------CCCcEEEEcCCCccHHHHHHHHHHHHH-hcCCcEEEecchHHHHHHHHHHHhccccEEE
Q 039491 402 DNFQKEAIYYLE---------NGDSVFVAAHTSAGKTVVAEYAFALAT-KHCTRAVYTAPIKTISNQKYRDFSGKFDVGL 471 (1379)
Q Consensus 402 ~~~Q~eAI~~L~---------~g~sVlV~ApTGSGKTlvae~aI~~~l-~~~~raIylsPtkaLsnQk~~~~~~~f~Vgl 471 (1379)
++-|++++..+. .|+.+++.+|+|+|||..+........ ..+..++|+ +...+..+....+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~----- 89 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF-DTKDLIFRLKHLMDEG----- 89 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE-EHHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE-EHHHHHHHHHHHhcCc-----
Confidence 456777666542 478899999999999987654333333 445556654 3444444433333211
Q ss_pred EecCcccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCC-CccchhHHHHHHHHcC-ccceEEEecccCCCh
Q 039491 472 LTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVN-DIERGVVWEEVIIMLP-RHINIVLLSATVPNT 549 (1379)
Q Consensus 472 ltGdv~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~-d~~rG~v~eeii~~Lp-~~vqiIlLSATvpN~ 549 (1379)
. .. + +...+ .+.+++|+||++... +......+..++.... ....+|+.|-..+..
T Consensus 90 ---~------~~------~-~~~~~-------~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 90 ---K------DT------K-FLKTV-------LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp ---C------CS------H-HHHHH-------HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred ---h------HH------H-HHHHh-------cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 0 00 1 22222 256899999999643 2211222333443332 345566655555443
No 105
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.21 E-value=0.018 Score=69.19 Aligned_cols=107 Identities=13% Similarity=0.032 Sum_probs=67.3
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRSML 496 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL~smL 496 (1379)
-.+|.|+.|+|||.. |...+. ..+.++++||++++..+.+.+.+. |. ......-|+|-+.+.-
T Consensus 163 v~~I~G~aGsGKTt~----I~~~~~-~~~~lVlTpT~~aa~~l~~kl~~~-------~~---~~~~~~~V~T~dsfL~-- 225 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKE----ILSRVN-FEEDLILVPGRQAAEMIRRRANAS-------GI---IVATKDNVRTVDSFLM-- 225 (446)
T ss_dssp EEEEEECTTSCHHHH----HHHHCC-TTTCEEEESCHHHHHHHHHHHTTT-------SC---CCCCTTTEEEHHHHHH--
T ss_pred EEEEEcCCCCCHHHH----HHHHhc-cCCeEEEeCCHHHHHHHHHHhhhc-------Cc---cccccceEEEeHHhhc--
Confidence 468999999999974 333333 267899999999998888887642 11 0122345899886532
Q ss_pred hcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEeccc
Q 039491 497 YRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSAT 545 (1379)
Q Consensus 497 ~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSAT 545 (1379)
.......-..++||||||-++. ...+..++..++. .++|++-=+
T Consensus 226 ~~~~~~~~~~d~liiDE~sm~~----~~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 226 NYGKGARCQFKRLFIDEGLMLH----TGCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp TTTSSCCCCCSEEEEETGGGSC----HHHHHHHHHHTTC-SEEEEEECT
T ss_pred CCCCCCCCcCCEEEEeCcccCC----HHHHHHHHHhCCC-CEEEEecCc
Confidence 1111112348999999998663 2334444445544 566665433
No 106
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.98 E-value=0.015 Score=63.80 Aligned_cols=92 Identities=15% Similarity=0.123 Sum_probs=57.6
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEEEecCcccCCCCceeeecHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVSLRPEASCLIMTTEI 491 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~in~~a~IlV~TpEi 491 (1379)
..|.-+++.+++|+|||..+.-.+..+..++.+++|+.|.+. + +...... +.|+ . . ..+.+.+.+.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d--~---r~~~~i~srlG~-----~--~-~~~~~~~~~~ 76 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID--T---RSIRNIQSRTGT-----S--L-PSVEVESAPE 76 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--G---GGCSSCCCCCCC-----S--S-CCEEESSTHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccC--c---hHHHHHHHhcCC-----C--c-cccccCCHHH
Confidence 346678899999999999887777777788999999988652 1 1000111 2221 1 1 1223455555
Q ss_pred HHHHHhcCcccCCCccEEEEeccCCCC
Q 039491 492 LRSMLYRGADIIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 492 L~smL~~~~~~l~~v~lVI~DEaH~l~ 518 (1379)
+...+.... .-.+.++||+||++.+.
T Consensus 77 i~~~i~~~~-~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 77 ILNYIMSNS-FNDETKVIGIDEVQFFD 102 (223)
T ss_dssp HHHHHHSTT-SCTTCCEEEECSGGGSC
T ss_pred HHHHHHHHh-hCCCCCEEEEecCccCc
Confidence 555554321 12458999999999875
No 107
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.03 Score=64.54 Aligned_cols=118 Identities=5% Similarity=-0.003 Sum_probs=63.3
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhc-------CCcEEEec------chHHHHHHHHHHHhccccEEEEecCcccCC
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKH-------CTRAVYTA------PIKTISNQKYRDFSGKFDVGLLTGDVSLRP 480 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~-------~~raIyls------PtkaLsnQk~~~~~~~f~VglltGdv~in~ 480 (1379)
.+.++++.+|+|+|||.++-..+...... ....+++- |. .+..+.++.+.. . ....
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~-~~~~~I~~~L~g---------~-~~~~ 112 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMD-ALYEKIWFAISK---------E-NLCG 112 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--H-HHHHHHHHHHSC---------C-C--C
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHH-HHHHHHHHHhcC---------C-CCCc
Confidence 45689999999999999876655444321 12344443 22 222233333321 1 0000
Q ss_pred CCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHH--c-CccceEEEecccCCChH
Q 039491 481 EASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIM--L-PRHINIVLLSATVPNTV 550 (1379)
Q Consensus 481 ~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~--L-p~~vqiIlLSATvpN~~ 550 (1379)
-.+.+.|..++......-...-+||+||+|++.+. .++..++.. . ..++-+|+.++|+.+..
T Consensus 113 -----~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q---~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 113 -----DISLEALNFYITNVPKAKKRKTLILIQNPENLLSE---KILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp -----CCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCT---HHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred -----hHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcc---hHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 11235555555432122345568999999999832 223333321 1 23567888999987665
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.72 E-value=0.012 Score=62.43 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=31.8
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIK 453 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtk 453 (1379)
.|.-.++.+|.|+|||..+.-.+..+...+.+++++.|.+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 3566889999999999987656666666788999999984
No 109
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.60 E-value=0.025 Score=60.48 Aligned_cols=107 Identities=15% Similarity=0.142 Sum_probs=59.4
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRS 494 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL~s 494 (1379)
|+-.++.+++|||||..++-.+..+..++.+++++.|.+. + .+. .. .+.+.. .+.. ..+.+...+-+..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d--~-r~~--~~----~i~s~~-g~~~-~a~~~~~~~~i~~ 76 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEID--N-RYS--KE----DVVSHM-GEKE-QAVAIKNSREILK 76 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC------------C----EEECTT-SCEE-ECEEESSSTHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--c-cch--HH----HHHhhc-CCce-eeEeeCCHHHHHH
Confidence 5567889999999999877777777788999999999852 1 111 00 111110 1100 1122233222333
Q ss_pred HHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEe
Q 039491 495 MLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLL 542 (1379)
Q Consensus 495 mL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlL 542 (1379)
.+. .++++||+||++.+.. . .++.+-.+.+.++.+|+.
T Consensus 77 ~~~------~~~dvViIDEaqfl~~---~-~v~~l~~l~~~~~~Vi~~ 114 (191)
T 1xx6_A 77 YFE------EDTEVIAIDEVQFFDD---E-IVEIVNKIAESGRRVICA 114 (191)
T ss_dssp HCC------TTCSEEEECSGGGSCT---H-HHHHHHHHHHTTCEEEEE
T ss_pred HHh------ccCCEEEEECCCCCCH---H-HHHHHHHHHhCCCEEEEE
Confidence 221 2589999999999752 1 244443334555555553
No 110
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.34 E-value=0.014 Score=59.78 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=23.9
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEe
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 449 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyl 449 (1379)
.|+.+++.+|+|+|||..+-.........+.+++|+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~ 70 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYI 70 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 688999999999999986543333332334444444
No 111
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.18 E-value=0.082 Score=60.54 Aligned_cols=76 Identities=18% Similarity=0.343 Sum_probs=45.9
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRS 494 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL~s 494 (1379)
+.++++.||+|+|||..+..........+..++|+... .+..+....+.. ...+.+..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~---------------------~~~~~~~~ 94 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD-DFAQAMVEHLKK---------------------GTINEFRN 94 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH-HHHHHHHHHHHH---------------------TCHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH-HHHHHHHHHHHc---------------------CcHHHHHH
Confidence 46899999999999987654433333446777777643 333333222221 01222333
Q ss_pred HHhcCcccCCCccEEEEeccCCCCC
Q 039491 495 MLYRGADIIRDIEWVIFDEVHYVND 519 (1379)
Q Consensus 495 mL~~~~~~l~~v~lVI~DEaH~l~d 519 (1379)
.+ .+..+++|||+|.+..
T Consensus 95 ~~-------~~~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 95 MY-------KSVDLLLLDDVQFLSG 112 (324)
T ss_dssp HH-------HTCSEEEEECGGGGTT
T ss_pred Hh-------cCCCEEEEcCcccccC
Confidence 22 2357999999999874
No 112
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.15 E-value=0.041 Score=63.90 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=18.8
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFA 437 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~ 437 (1379)
.+.++++.||+|+|||..+.....
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999987654433
No 113
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.07 E-value=0.084 Score=55.87 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=25.1
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA 450 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls 450 (1379)
.++++.+|+|+|||..+..........+.+++|+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 78999999999999976544444445566666553
No 114
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.92 E-value=0.066 Score=62.36 Aligned_cols=36 Identities=25% Similarity=0.294 Sum_probs=25.0
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhc--------CCcEEEec
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKH--------CTRAVYTA 450 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~--------~~raIyls 450 (1379)
..++++.+|+|+|||..+.......... +..++++.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 4579999999999998875444333232 56677765
No 115
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.68 E-value=0.073 Score=57.27 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=25.3
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA 450 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls 450 (1379)
.+.++++.+|+|+|||..+..........+..++|+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP 87 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4678999999999999876544333334455555553
No 116
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.43 E-value=0.32 Score=58.33 Aligned_cols=132 Identities=12% Similarity=0.093 Sum_probs=72.2
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec--chHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecH-HH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA--PIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTT-EI 491 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls--PtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~Tp-Ei 491 (1379)
+..+++++++|+|||+.+..........+.+++++. +.+.-+.+....+.....+........ ..| ++
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~---------~dp~~i 167 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNN---------QNPIEI 167 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTC---------SCHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeecccc---------CCHHHH
Confidence 456788999999999875544444445677777655 344434444444444333333332221 112 22
Q ss_pred HHHHHhcCcccCCCccEEEEeccCCCC---CccchhHHHHHHHHcCccceEEEecccCC-ChHHHHHHHh
Q 039491 492 LRSMLYRGADIIRDIEWVIFDEVHYVN---DIERGVVWEEVIIMLPRHINIVLLSATVP-NTVEFADWIG 557 (1379)
Q Consensus 492 L~smL~~~~~~l~~v~lVI~DEaH~l~---d~~rG~v~eeii~~Lp~~vqiIlLSATvp-N~~efa~wl~ 557 (1379)
+...+... ...+.++||+|++-+.. +...-..+..+...+.++.-++.++|+.. +....++.+.
T Consensus 168 ~~~al~~a--~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 168 AKKGVDIF--VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp HHHHHHHT--TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred HHHHHHHH--HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHh
Confidence 22333221 12578999999998754 22222233344445555666777888854 3345555444
No 117
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.38 E-value=0.25 Score=59.41 Aligned_cols=77 Identities=14% Similarity=0.252 Sum_probs=46.5
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHH-hc--CCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALAT-KH--CTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEI 491 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l-~~--~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEi 491 (1379)
..++++.||+|+|||..+. +|+..+ .. +.+++|+.... +.++....+... ..+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~-aia~~l~~~~~~~~v~~v~~~~-~~~~~~~~~~~~---------------------~~~~ 186 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDLRVMYITSEK-FLNDLVDSMKEG---------------------KLNE 186 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH-HHHHHHHHHCCSSCEEEEEHHH-HHHHHHHHHHTT---------------------CHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEeeHHH-HHHHHHHHHHcc---------------------cHHH
Confidence 4589999999999998764 333333 33 66777766543 444433333320 1122
Q ss_pred HHHHHhcCcccCCCccEEEEeccCCCCCc
Q 039491 492 LRSMLYRGADIIRDIEWVIFDEVHYVNDI 520 (1379)
Q Consensus 492 L~smL~~~~~~l~~v~lVI~DEaH~l~d~ 520 (1379)
+...+. .+.+++++||+|.+.+.
T Consensus 187 ~~~~~~------~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 187 FREKYR------KKVDILLIDDVQFLIGK 209 (440)
T ss_dssp HHHHHT------TTCSEEEEECGGGGSSC
T ss_pred HHHHhc------CCCCEEEEeCcccccCC
Confidence 322221 15679999999999863
No 118
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.33 E-value=0.052 Score=55.80 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCccHHHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~a 435 (1379)
..++++.+|+|+|||.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~ 63 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGL 63 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 468999999999999876543
No 119
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.28 E-value=0.048 Score=73.99 Aligned_cols=68 Identities=18% Similarity=0.118 Sum_probs=56.8
Q ss_pred CCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcC------CcEEEecchHHHHHHHHHHHhccc
Q 039491 398 PFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHC------TRAVYTAPIKTISNQKYRDFSGKF 467 (1379)
Q Consensus 398 pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~------~raIylsPtkaLsnQk~~~~~~~f 467 (1379)
...+++-|.+||..- +.+++|.|.-|||||.+..--|+..+.++ .+++++++|++.+++..+++...+
T Consensus 8 ~~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp --CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 456899999999764 77999999999999999777777777553 489999999999999998888754
No 120
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.20 E-value=0.11 Score=56.28 Aligned_cols=40 Identities=13% Similarity=-0.011 Sum_probs=32.2
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKT 454 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtka 454 (1379)
|.=.++.++.|||||..++-.+..+..++.+++++.|.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 4456789999999999877777777788999999999864
No 121
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.12 E-value=0.099 Score=65.72 Aligned_cols=115 Identities=20% Similarity=0.283 Sum_probs=78.5
Q ss_pred CCCHHHHHHHHHHHC--CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcc
Q 039491 400 ELDNFQKEAIYYLEN--GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVS 477 (1379)
Q Consensus 400 eL~~~Q~eAI~~L~~--g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~ 477 (1379)
.++.-|.+|+..+.. ....++.|+-|.|||.+.-++++... .++++++|+++=+...++ |...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~---~~~~vtAP~~~a~~~l~~-~~~~----------- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA---GRAIVTAPAKASTDVLAQ-FAGE----------- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS---SCEEEECSSCCSCHHHHH-HHGG-----------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH---hCcEEECCCHHHHHHHHH-HhhC-----------
Confidence 478899999999865 34578999999999987766666653 357999999876554333 3211
Q ss_pred cCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCCh
Q 039491 478 LRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNT 549 (1379)
Q Consensus 478 in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~ 549 (1379)
.+-++.|.-+.. ...+.++||||||=.|. -+.+..++. ....++||.|+...
T Consensus 240 -----~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~----~~~~v~~~tTv~GY 291 (671)
T 2zpa_A 240 -----KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVS----RFPRTLLTTTVQGY 291 (671)
T ss_dssp -----GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHT----TSSEEEEEEEBSST
T ss_pred -----CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHh----hCCeEEEEecCCcC
Confidence 144566765432 23468999999999875 344444443 33458888887644
No 122
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.09 E-value=0.055 Score=68.65 Aligned_cols=84 Identities=17% Similarity=0.142 Sum_probs=64.5
Q ss_pred CCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc----CCcEEEecchHHHHHHHHHHHhccccEEEEecC
Q 039491 400 ELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH----CTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGD 475 (1379)
Q Consensus 400 eL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~----~~raIylsPtkaLsnQk~~~~~~~f~VglltGd 475 (1379)
.|++-|++|+.+ .+..++|.|+.|||||.+...-|+..+.. ..++++++.|+..+.+..+++.+.. |.
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l------~~ 73 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL------GR 73 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS------CT
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHc------Cc
Confidence 489999999986 35689999999999999877777766643 3689999999999999998888754 11
Q ss_pred cccCCCCceeeecHHHHHH
Q 039491 476 VSLRPEASCLIMTTEILRS 494 (1379)
Q Consensus 476 v~in~~a~IlV~TpEiL~s 494 (1379)
. ....+.|+|...|..
T Consensus 74 ~---~~~~~~v~Tfhs~~~ 89 (673)
T 1uaa_A 74 K---EARGLMISTFHTLGL 89 (673)
T ss_dssp T---TTTTSEEEEHHHHHH
T ss_pred c---cccCCEEEeHHHHHH
Confidence 0 113477888876643
No 123
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.08 E-value=0.13 Score=58.91 Aligned_cols=36 Identities=8% Similarity=0.083 Sum_probs=26.7
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHH-hcCCcEEEec
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALAT-KHCTRAVYTA 450 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l-~~~~raIyls 450 (1379)
+.++++.+|||+|||..+......+. ..+.+++|+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 67999999999999988754444444 5667776654
No 124
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.80 E-value=0.1 Score=60.65 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=23.1
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHh-c-CCcEEEec
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATK-H-CTRAVYTA 450 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~-~-~~raIyls 450 (1379)
.+++.||+|+|||..+.. ++..+. . +..++++.
T Consensus 46 ~~li~G~~G~GKTtl~~~-l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRK-LWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHH-HHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHhhhcCeeEEEEe
Confidence 799999999999987644 333343 3 45666664
No 125
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.77 E-value=0.26 Score=56.95 Aligned_cols=125 Identities=10% Similarity=0.074 Sum_probs=62.7
Q ss_pred CHHHHHHHHHH----HCCC---cEEEEcCCCccHHHHHHHHHHHHHhcCCc---EEEecchHHHHHHHHHHHhcc-c-cE
Q 039491 402 DNFQKEAIYYL----ENGD---SVFVAAHTSAGKTVVAEYAFALATKHCTR---AVYTAPIKTISNQKYRDFSGK-F-DV 469 (1379)
Q Consensus 402 ~~~Q~eAI~~L----~~g~---sVlV~ApTGSGKTlvae~aI~~~l~~~~r---aIylsPtkaLsnQk~~~~~~~-f-~V 469 (1379)
.|||.+++..+ .+|+ .+++.||.|+|||.++............. ..-.++. + +.+... . ++
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~---c----~~~~~~~~~d~ 76 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRG---C----QLMQAGTHPDY 76 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHH---H----HHHHHTCCTTE
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHH---H----HHHhcCCCCCE
Confidence 47788877665 3443 48999999999998765433333222111 1111111 1 112111 1 55
Q ss_pred EEEecCcccCCCCceeeecHHHHHHHHhc--CcccCCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEec
Q 039491 470 GLLTGDVSLRPEASCLIMTTEILRSMLYR--GADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLLS 543 (1379)
Q Consensus 470 glltGdv~in~~a~IlV~TpEiL~smL~~--~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlLS 543 (1379)
..+.++.. ...+- .+.++.+... .........+||+||||.+.. ...+.++..+ |+++.+|+.|
T Consensus 77 ~~~~~~~~---~~~~~---i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~----~a~naLLk~lEep~~~~~~Il~t 145 (334)
T 1a5t_A 77 YTLAPEKG---KNTLG---VDAVREVTEKLNEHARLGGAKVVWVTDAALLTD----AAANALLKTLEEPPAETWFFLAT 145 (334)
T ss_dssp EEECCCTT---CSSBC---HHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH----HHHHHHHHHHTSCCTTEEEEEEE
T ss_pred EEEecccc---CCCCC---HHHHHHHHHHHhhccccCCcEEEEECchhhcCH----HHHHHHHHHhcCCCCCeEEEEEe
Confidence 54443210 11221 2333433322 112345688999999999974 2334455544 2345555554
No 126
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=93.76 E-value=0.088 Score=67.43 Aligned_cols=66 Identities=15% Similarity=0.116 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhc----CCcEEEecchHHHHHHHHHHHhccc
Q 039491 400 ELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKH----CTRAVYTAPIKTISNQKYRDFSGKF 467 (1379)
Q Consensus 400 eL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~----~~raIylsPtkaLsnQk~~~~~~~f 467 (1379)
.|++-|++|+.+ .+..++|.|+.|||||.+...-|+..+.. ..++++++.|+..+.+..+++.+..
T Consensus 11 ~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 489999999986 34689999999999999987777777753 2589999999999999888887653
No 127
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.26 E-value=0.18 Score=51.62 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCccHHHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~a 435 (1379)
+.++++.+|+|+|||.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~ 63 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGL 63 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 468999999999999876433
No 128
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.22 E-value=0.14 Score=56.18 Aligned_cols=41 Identities=10% Similarity=-0.019 Sum_probs=34.7
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKT 454 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtka 454 (1379)
.|.-.++.++.|||||..++-.+..+..++.+++++-|.+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC
Confidence 46667889999999999887777888888999999999863
No 129
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.22 E-value=0.45 Score=49.87 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=15.9
Q ss_pred CcEEEEcCCCccHHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~ 434 (1379)
.++++.||+|+|||..+..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~ 57 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIA 57 (226)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4699999999999987543
No 130
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.17 E-value=0.11 Score=60.15 Aligned_cols=36 Identities=25% Similarity=0.440 Sum_probs=24.9
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhc---CCcEEEec
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKH---CTRAVYTA 450 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~---~~raIyls 450 (1379)
+..+++.||+|+|||..+.......... +..++++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 5689999999999998765433333222 55666665
No 131
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.12 E-value=0.057 Score=57.81 Aligned_cols=39 Identities=8% Similarity=-0.047 Sum_probs=33.3
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecch
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPI 452 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPt 452 (1379)
.|+=.|+.++.|||||.-.+-++......+.+++|+.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 366689999999999987777787777888999999886
No 132
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.70 E-value=0.12 Score=52.01 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=17.7
Q ss_pred HHCCCcEEEEcCCCccHHHHH
Q 039491 412 LENGDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlva 432 (1379)
...+.+|++.+++|+|||.+|
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 345678999999999999864
No 133
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.40 E-value=0.35 Score=54.52 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCccHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae 433 (1379)
+.++++.+|+|+|||.++.
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3579999999999998764
No 134
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.31 E-value=0.21 Score=53.10 Aligned_cols=35 Identities=20% Similarity=0.112 Sum_probs=26.7
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecc
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAP 451 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsP 451 (1379)
.|.-+++.+|+|+|||..+...+. ..+.+++|+.-
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEEC
Confidence 467899999999999987654444 56778888763
No 135
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.24 E-value=0.66 Score=51.62 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=37.7
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHH--HCCCcEEEEcCCCccHHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYL--ENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L--~~g~sVlV~ApTGSGKTlvae 433 (1379)
....|.+++..+.....+.+.+..+.. ..+.+..+ ..+..+++.+|+|+|||.++.
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLK---------HPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHH---------CHHHHHHHCCCCCSEEEEESSSSSSHHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhh---------CHHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 345799999998888888775533211 11122222 346789999999999998753
No 136
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.24 E-value=0.39 Score=58.93 Aligned_cols=72 Identities=8% Similarity=-0.027 Sum_probs=41.5
Q ss_pred cccccccCCChHHHHHHHhhchhhhcc--CCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcE
Q 039491 370 KEAWVVSGSTEAIADRFHELVPDLALD--FPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRA 446 (1379)
Q Consensus 370 ~~~w~~~~~~~~~~~~~~~l~p~~a~~--~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~ra 446 (1379)
...|.++...+..+..+.+++...... .+|. +.. ......+.+++.||+|+|||.++. +++..+ +..+
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~------~~~~~~~~lLL~GppGtGKTtla~-~la~~l--~~~~ 105 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGK------DGSGVFRAAMLYGPPGIGKTTAAH-LVAQEL--GYDI 105 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCT------TSTTSCSEEEEECSTTSSHHHHHH-HHHHHT--TCEE
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCc------cCCCCCcEEEEECCCCCCHHHHHH-HHHHHc--CCCE
Confidence 346888888888888877765443211 1121 000 000023689999999999998754 334333 4455
Q ss_pred EEec
Q 039491 447 VYTA 450 (1379)
Q Consensus 447 Iyls 450 (1379)
+++.
T Consensus 106 i~in 109 (516)
T 1sxj_A 106 LEQN 109 (516)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 5553
No 137
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.18 E-value=0.71 Score=52.51 Aligned_cols=125 Identities=14% Similarity=0.180 Sum_probs=66.8
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHH-hcCCcEEEec--chHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALAT-KHCTRAVYTA--PIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTE 490 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l-~~~~raIyls--PtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpE 490 (1379)
.++.+.+++++|+|||..+........ ..|.+++++. |.+.-+.+....+.+..++.... ..++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~------------~~~~~ 171 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEV------------CYTKE 171 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCB------------CSSHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEe------------cCCHH
Confidence 467889999999999986543333332 3576766653 23333333344444332211110 12345
Q ss_pred HHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcC---ccceEEEecccCCChHHHHHHHh
Q 039491 491 ILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLP---RHINIVLLSATVPNTVEFADWIG 557 (1379)
Q Consensus 491 iL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp---~~vqiIlLSATvpN~~efa~wl~ 557 (1379)
.+...+.. +.+.++||+|-+-.... . ...+.++...+. ++-.++.++||. +..++.++..
T Consensus 172 ~l~~al~~----~~~~dlvIiDT~G~~~~-~-~~~~~el~~~l~~~~~~~~~lVl~at~-~~~~~~~~~~ 234 (296)
T 2px0_A 172 EFQQAKEL----FSEYDHVFVDTAGRNFK-D-PQYIDELKETIPFESSIQSFLVLSATA-KYEDMKHIVK 234 (296)
T ss_dssp HHHHHHHH----GGGSSEEEEECCCCCTT-S-HHHHHHHHHHSCCCTTEEEEEEEETTB-CHHHHHHHTT
T ss_pred HHHHHHHH----hcCCCEEEEeCCCCChh-h-HHHHHHHHHHHhhcCCCeEEEEEECCC-CHHHHHHHHH
Confidence 55555442 36789999997665432 1 233444444443 333467777774 3345555544
No 138
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.11 E-value=0.28 Score=52.57 Aligned_cols=39 Identities=26% Similarity=0.106 Sum_probs=33.5
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIK 453 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtk 453 (1379)
...++|..++|.|||.+|.-..+.++.+|.||+++.=.|
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIK 66 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 348999999999999998877888889999999996554
No 139
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.09 E-value=0.59 Score=56.15 Aligned_cols=122 Identities=8% Similarity=0.094 Sum_probs=68.9
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec--chHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecH-HH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA--PIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTT-EI 491 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls--PtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~Tp-Ei 491 (1379)
...+++++++|+|||+++.-.+....+++.+++++. |.++-+.++.+.+.+...+-++..+.. ..| ++
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~---------~dp~~i 170 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQE---------KDAIKL 170 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTC---------CCHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCC---------CCHHHH
Confidence 346889999999999876544444446677887766 555655555666665554444432221 123 23
Q ss_pred HHHHHhcCcccCCCccEEEEeccCCCCCcc-chhHHHHHHHHcCccceEEEecccCC
Q 039491 492 LRSMLYRGADIIRDIEWVIFDEVHYVNDIE-RGVVWEEVIIMLPRHINIVLLSATVP 547 (1379)
Q Consensus 492 L~smL~~~~~~l~~v~lVI~DEaH~l~d~~-rG~v~eeii~~Lp~~vqiIlLSATvp 547 (1379)
+...+... .-.+.++||+|.+=+..... .-..+..+.....++.-++.++||..
T Consensus 171 ~~~al~~a--~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~g 225 (443)
T 3dm5_A 171 AKEGVDYF--KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIG 225 (443)
T ss_dssp HHHHHHHH--HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred HHHHHHHH--HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCc
Confidence 33333211 11347899999997654221 11112233333445566788888864
No 140
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.06 E-value=1 Score=47.72 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=15.8
Q ss_pred cEEEEcCCCccHHHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~a 435 (1379)
.+++.+|+|+|||..+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~ 65 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLL 65 (250)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999876433
No 141
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.56 E-value=1.1 Score=47.73 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=28.5
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA 450 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls 450 (1379)
..|+.+++.+|+|+|||..+...+......+.+++|+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 35788999999999999876555445555677788875
No 142
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.43 E-value=0.32 Score=58.56 Aligned_cols=39 Identities=21% Similarity=0.056 Sum_probs=29.1
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHh-cCCcEEEecc
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATK-HCTRAVYTAP 451 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~-~~~raIylsP 451 (1379)
..|.-++|+|++|+|||..+.-.+..... .+.+++|++-
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 45678999999999999876555444444 5778998764
No 143
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.39 E-value=0.45 Score=52.60 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=18.2
Q ss_pred HCCCcEEEEcCCCccHHHHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~ 434 (1379)
..+.++++.+++|+|||.++..
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~ 48 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASR 48 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHHHH
Confidence 3567899999999999987643
No 144
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.11 E-value=0.55 Score=52.11 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=15.8
Q ss_pred CcEEEEcCCCccHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae 433 (1379)
.++++.+|+|+|||.++.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 579999999999998764
No 145
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.03 E-value=0.41 Score=54.57 Aligned_cols=41 Identities=10% Similarity=0.074 Sum_probs=23.5
Q ss_pred CCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEec
Q 039491 503 IRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLS 543 (1379)
Q Consensus 503 l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLS 543 (1379)
..+..+||+||+|.+...+....+..++...+.++++|+.|
T Consensus 103 ~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 103 DGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 34778999999999962111222223333344566666633
No 146
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.98 E-value=0.74 Score=51.92 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=15.2
Q ss_pred cEEEEcCCCccHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae 433 (1379)
++++.||+|+|||.++.
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 69999999999998764
No 147
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.95 E-value=1.6 Score=49.99 Aligned_cols=43 Identities=9% Similarity=0.270 Sum_probs=25.2
Q ss_pred CCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccC
Q 039491 503 IRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATV 546 (1379)
Q Consensus 503 l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATv 546 (1379)
..+.++||+||+|.+. ......+..++...+.++.+|+.|-.+
T Consensus 132 ~~~~~vlilDE~~~L~-~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANSLT-KDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTSSC-HHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccccC-HHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 4467899999999954 222223334444455666666666544
No 148
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=90.93 E-value=0.54 Score=51.07 Aligned_cols=41 Identities=12% Similarity=0.013 Sum_probs=31.8
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKT 454 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtka 454 (1379)
.|.-.++.++-|||||..++-.+..+...+.+++++.|.+.
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 46667899999999998766666666677899999999753
No 149
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.78 E-value=1.2 Score=48.76 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=34.1
Q ss_pred ccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHH
Q 039491 371 EAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 371 ~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae 433 (1379)
..|.+++..+.....+.+++..+. .| ..|... .+.....+++.+|+|+|||.++.
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~--~~---~~~~~~---g~~~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLK--SP---ERFLQL---GAKVPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHH--CC---C---------CCCCCEEEEESCTTSSHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHH--CH---HHHHHc---CCCCCceEEEECCCCCCHHHHHH
Confidence 468888888888777776543221 11 112111 12345689999999999998754
No 150
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.76 E-value=1.1 Score=51.35 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=37.1
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae 433 (1379)
....|.+++..+.....+.+.+..+. .+|- -++. .......+++.+|+|+|||.++.
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~-~~~~---~~~~----~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPV-KFPH---LFKG----NRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHH-HCGG---GCCT----TCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHH-hCHH---HHhc----CCCCCCeEEEECCCCCcHHHHHH
Confidence 45679999999999888888653221 1110 0000 01124679999999999998764
No 151
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.76 E-value=0.45 Score=55.76 Aligned_cols=36 Identities=14% Similarity=0.298 Sum_probs=23.3
Q ss_pred CCcEEE--EcCCCccHHHHHHHHHHHHHhc------CCcEEEec
Q 039491 415 GDSVFV--AAHTSAGKTVVAEYAFALATKH------CTRAVYTA 450 (1379)
Q Consensus 415 g~sVlV--~ApTGSGKTlvae~aI~~~l~~------~~raIyls 450 (1379)
+..++| .++.|+|||..+.......... +..++++.
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 346888 8999999998765444333221 44566654
No 152
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.70 E-value=0.62 Score=49.46 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=33.4
Q ss_pred CCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChH--HHHHHHhhh
Q 039491 503 IRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTV--EFADWIGRT 559 (1379)
Q Consensus 503 l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~--efa~wl~~~ 559 (1379)
..+.+++|+||+..+.+.+. ..++.+...+.....+|+-|+|++... .|.+.+...
T Consensus 103 ~~~~dvlilDE~g~~~~~~~-~~~~~l~~~l~~~~~~ilgti~vsh~~~~~~vd~i~~~ 160 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQ-LFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNR 160 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCS-HHHHHHHHHHHCSSCCEEEECCCCCSSCCTTHHHHHTT
T ss_pred ccCCCEEEEeCCCccccccH-HHHHHHHHHHhCCCcEEEEEeecCCCCchHHHHHHeec
Confidence 56789999999877754332 234544444444444555577875432 455665543
No 153
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.39 E-value=1.1 Score=51.15 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=31.6
Q ss_pred ccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHH
Q 039491 371 EAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 371 ~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae 433 (1379)
..|.++...+..+..+...+..... .-....++++.+|+|+|||.++.
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~---------------~~~~~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKK---------------RNECLDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHH---------------TTSCCCCEEEECSTTSSHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHh---------------cCCCCCeEEEECcCCCCHHHHHH
Confidence 4688888877777777654322110 00123579999999999998754
No 154
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.36 E-value=0.69 Score=55.76 Aligned_cols=40 Identities=23% Similarity=0.183 Sum_probs=29.7
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHHh-cCCcEEEecc
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALATK-HCTRAVYTAP 451 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l~-~~~raIylsP 451 (1379)
+..|+-++|+|++|+|||..+.-.+..... .+.+++|++.
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 346788999999999999876555554444 5678888763
No 155
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.32 E-value=0.75 Score=52.63 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=23.2
Q ss_pred CCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEec
Q 039491 504 RDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLS 543 (1379)
Q Consensus 504 ~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLS 543 (1379)
.+..+||+||+|.+.... ...+..++...+.+..+|+.+
T Consensus 132 ~~~~vliiDE~~~l~~~~-~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADA-QSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHHH-HHHHHHHHHhcCCCceEEEEe
Confidence 356799999999987422 222333344445556666644
No 156
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.97 E-value=0.56 Score=54.23 Aligned_cols=57 Identities=19% Similarity=0.121 Sum_probs=33.2
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHh
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATK 441 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~ 441 (1379)
+...|..+...+.....+..+....... ...++.+++.+|+|+|||.++. +++..+.
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~~~~---------------~~~~~~vLl~GppGtGKT~la~-~la~~l~ 95 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMIREG---------------KIAGRAVLIAGQPGTGKTAIAM-GMAQALG 95 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHHTT---------------CCTTCEEEEEESTTSSHHHHHH-HHHHHHC
T ss_pred cCcchhhccChHHHHHHHHHHHHHHHcC---------------CCCCCEEEEECCCCCCHHHHHH-HHHHHhc
Confidence 3345777777766655544322111100 0123589999999999998764 4444443
No 157
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.80 E-value=0.64 Score=53.52 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=23.4
Q ss_pred CCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEec
Q 039491 504 RDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLS 543 (1379)
Q Consensus 504 ~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLS 543 (1379)
....++|+||+|.+.... ...+..++...+.++.+|+.+
T Consensus 109 ~~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAA-QNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 457899999999986421 222333334445566666553
No 158
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=89.68 E-value=1.3 Score=50.88 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=37.0
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae 433 (1379)
....|.+++..+...+.+.+.+-.+. .+|- -|+. .....+.+++.+|+|+|||..+.
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~-~~~~---~~~~----~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPI-KFPH---LFTG----KRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHH-HCGG---GSCT----TCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHH-hCHH---HHhC----CCCCCceEEEECCCCccHHHHHH
Confidence 45689999999988888887553221 1111 0110 01224689999999999998753
No 159
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.33 E-value=0.33 Score=56.39 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=31.0
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecc
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAP 451 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsP 451 (1379)
+..|+-++++|++|+|||..+.-.+......+.+++|++.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3457789999999999998766555555567888998864
No 160
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=88.99 E-value=0.93 Score=51.31 Aligned_cols=48 Identities=13% Similarity=0.099 Sum_probs=29.6
Q ss_pred ccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHH
Q 039491 371 EAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 371 ~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae 433 (1379)
..|..+...+..+..+...+...+. .-....++++.+|+|+|||.++.
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~---------------~~~~~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKA---------------RKEPLEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHH---------------HCSCCCCCEEECCTTCCCHHHHH
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHc---------------cCCCCCcEEEECCCCCCHHHHHH
Confidence 3566666666666666553221110 00134689999999999998754
No 161
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=88.73 E-value=1.3 Score=50.67 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=24.5
Q ss_pred cCCCccEEEEeccCCCCCccchhHHHHHHHHc---CccceEEEec
Q 039491 502 IIRDIEWVIFDEVHYVNDIERGVVWEEVIIML---PRHINIVLLS 543 (1379)
Q Consensus 502 ~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~L---p~~vqiIlLS 543 (1379)
...+.++||+||||.|.. ...+.++..+ |+++.+|+.+
T Consensus 79 ~~~~~kvviIdead~lt~----~a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 79 ELYTRKYVIVHDCERMTQ----QAANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSSEEEEETTGGGBCH----HHHHHTHHHHHSCCTTEEEEEEE
T ss_pred ccCCceEEEeccHHHhCH----HHHHHHHHHHhCCCCCeEEEEEE
Confidence 346789999999999973 2334444443 4456666654
No 162
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.05 E-value=1.9 Score=48.46 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=15.8
Q ss_pred cEEEEcCCCccHHHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~a 435 (1379)
++++.||+|+|||.++...
T Consensus 44 ~~ll~G~~G~GKt~la~~l 62 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCL 62 (323)
T ss_dssp CEEEECSTTSSHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHH
Confidence 5999999999999876433
No 163
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.98 E-value=0.72 Score=49.74 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=26.7
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHh------cCCcEEEec
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATK------HCTRAVYTA 450 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~------~~~raIyls 450 (1379)
..|.-+.+.+|+|+|||..+...+...+. .+..++|+.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 35778999999999999876554443222 256778875
No 164
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=87.86 E-value=0.54 Score=55.02 Aligned_cols=92 Identities=16% Similarity=0.127 Sum_probs=54.3
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEEEecCcccCCCCceeeecHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVSLRPEASCLIMTTEIL 492 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~in~~a~IlV~TpEiL 492 (1379)
.|+.+++.+++|+|||..+.-.+..+...+.+++|+.--..+..+..+.+.-.. ++-+.. + .|.+.+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~------~------~~~e~~ 129 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQ------P------DTGEQA 129 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEEC------C------SSHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeC------C------CCHHHH
Confidence 467899999999999998877777777778889998763332222222221111 111110 0 133444
Q ss_pred HHHHhcCcccCCCccEEEEeccCCCC
Q 039491 493 RSMLYRGADIIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 493 ~smL~~~~~~l~~v~lVI~DEaH~l~ 518 (1379)
...+..-. .-..+++||||.+..+.
T Consensus 130 ~~~~~~l~-~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 130 LEICDALA-RSGAVDVIVVDSVAALT 154 (356)
T ss_dssp HHHHHHHH-HHTCCSEEEEECGGGCC
T ss_pred HHHHHHHH-hccCCCEEEEcCHHHhc
Confidence 33332100 01357899999999876
No 165
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.57 E-value=0.57 Score=56.42 Aligned_cols=40 Identities=20% Similarity=0.112 Sum_probs=31.4
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecc
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAP 451 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsP 451 (1379)
+..|.-++|+|++|+|||..+.-.+.....++.+++|++-
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 3457789999999999998776655565566888999864
No 166
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=87.39 E-value=1.5 Score=49.10 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=28.6
Q ss_pred cccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHH
Q 039491 370 KEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 370 ~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae 433 (1379)
...|.++...+.....+...+.. ....++++.||+|+|||.++.
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~--------------------~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVER--------------------KNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTT--------------------TCCCCEEEESSSSSSHHHHHH
T ss_pred CCCHHHHhCCHHHHHHHHHHHhC--------------------CCCCeEEEECcCCcCHHHHHH
Confidence 34566666666666666553211 112359999999999998764
No 167
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=87.08 E-value=0.31 Score=56.86 Aligned_cols=39 Identities=28% Similarity=0.201 Sum_probs=32.8
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecch
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPI 452 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPt 452 (1379)
.|+-+++.+++|+|||..+...+....+.+.+++|+.--
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 477899999999999998877777777788889998744
No 168
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=86.84 E-value=2.5 Score=49.12 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=36.2
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae 433 (1379)
....|.+++..+.....+.+.+..+ ..+|. -|+. .......+++.+|+|+|||.++-
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~~~-~~~~~---~~~~----~~~~~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVILP-VKFPH---LFKG----NRKPTSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTHHH-HHCGG---GGCS----SCCCCCCEEEECSTTSCHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHH-HhCHH---HHhc----CCCCCceEEEECCCCCcHHHHHH
Confidence 4568999999888888887755321 11111 1110 01224679999999999998764
No 169
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=86.63 E-value=0.94 Score=53.16 Aligned_cols=92 Identities=17% Similarity=0.112 Sum_probs=53.7
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEEEecCcccCCCCceeeecHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVSLRPEASCLIMTTEIL 492 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~in~~a~IlV~TpEiL 492 (1379)
.|+-++|.+++|+|||..+.-.+......+.+++|+..-..+.....+.+.-.. ++-+.. + .|.+.+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~------~------~~~e~~ 140 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQ------P------DNGEQA 140 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEEC------C------SSHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeec------C------CcHHHH
Confidence 467899999999999998877777777778889998754332221112211100 111110 0 134444
Q ss_pred HHHHhcCcccCCCccEEEEeccCCCC
Q 039491 493 RSMLYRGADIIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 493 ~smL~~~~~~l~~v~lVI~DEaH~l~ 518 (1379)
...+..-. .-..+++||||.+..+.
T Consensus 141 l~~l~~l~-~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 141 LEIMELLV-RSGAIDVVVVDSVAALT 165 (366)
T ss_dssp HHHHHHHH-TTTCCSEEEEECTTTCC
T ss_pred HHHHHHHH-hcCCCCEEEEeChHHhc
Confidence 43332110 01357899999999886
No 170
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=86.25 E-value=1.7 Score=49.22 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=21.5
Q ss_pred HHHHHHHHH-HHCCCcEEEEcCCCccHHHHHHH
Q 039491 403 NFQKEAIYY-LENGDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 403 ~~Q~eAI~~-L~~g~sVlV~ApTGSGKTlvae~ 434 (1379)
.-+.+.+.. +..+..++|.|+.|+|||.....
T Consensus 18 ~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~ 50 (350)
T 2qen_A 18 EEESRKLEESLENYPLTLLLGIRRVGKSSLLRA 50 (350)
T ss_dssp HHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHH
Confidence 333333333 33467899999999999986543
No 171
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.90 E-value=2 Score=47.87 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=28.3
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHHhc----------CCcEEEecc
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALATKH----------CTRAVYTAP 451 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~----------~~raIylsP 451 (1379)
+..|+-+++.+|+|+|||..+...+...... +.+++|++-
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~ 76 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPA 76 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEES
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEEC
Confidence 4578899999999999998765544433221 357878763
No 172
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=85.85 E-value=3 Score=47.92 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=17.4
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALAT 440 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l 440 (1379)
.+++.||+|+|||..+. +++..+
T Consensus 40 ~~ll~G~~G~GKT~la~-~la~~l 62 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR-LLAKGL 62 (373)
T ss_dssp EEEEESCTTSSHHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHHHh
Confidence 48999999999998764 344444
No 173
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=85.47 E-value=1.4 Score=50.40 Aligned_cols=93 Identities=11% Similarity=0.146 Sum_probs=47.0
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec--chHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA--PIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEI 491 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls--PtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEi 491 (1379)
.++.+++++++|+|||+.+..........+.+++++. +.+.-+.++.+.+.+...+..+..... . .|..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~--~-------~~~~ 173 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEG--A-------DPAA 173 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTT--C-------CHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCc--c-------CHHH
Confidence 4567889999999999765433333334566666543 233333333333333333444332211 1 1211
Q ss_pred H-HHHHhcCcccCCCccEEEEeccCCC
Q 039491 492 L-RSMLYRGADIIRDIEWVIFDEVHYV 517 (1379)
Q Consensus 492 L-~smL~~~~~~l~~v~lVI~DEaH~l 517 (1379)
+ ...+.+ ....+.++||+|++-.+
T Consensus 174 v~~~al~~--a~~~~~dvvIiDtpg~~ 198 (306)
T 1vma_A 174 VAFDAVAH--ALARNKDVVIIDTAGRL 198 (306)
T ss_dssp HHHHHHHH--HHHTTCSEEEEEECCCC
T ss_pred HHHHHHHH--HHhcCCCEEEEECCCch
Confidence 1 111211 12356789999999753
No 174
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=85.38 E-value=2 Score=48.65 Aligned_cols=94 Identities=15% Similarity=0.170 Sum_probs=48.1
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec--chHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA--PIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEI 491 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls--PtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEi 491 (1379)
.++.+.+++++|+|||..+..........+.+++++- +.+..+..++..+.+..++.++.++.. ..|..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~---------~~p~~ 167 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDG---------ESPES 167 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTT---------CCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCC---------CCHHH
Confidence 4677888899999999765433333334566666653 233333322333333223333433221 12322
Q ss_pred H-HHHHhcCcccCCCccEEEEeccCCCC
Q 039491 492 L-RSMLYRGADIIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 492 L-~smL~~~~~~l~~v~lVI~DEaH~l~ 518 (1379)
+ +..+... ...+.++||||+.-.+.
T Consensus 168 l~~~~l~~~--~~~~~D~viiDtpp~~~ 193 (295)
T 1ls1_A 168 IRRRVEEKA--RLEARDLILVDTAGRLQ 193 (295)
T ss_dssp HHHHHHHHH--HHHTCCEEEEECCCCSS
T ss_pred HHHHHHHHH--HhCCCCEEEEeCCCCcc
Confidence 2 3233211 12467899999995443
No 175
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=84.75 E-value=0.78 Score=55.29 Aligned_cols=18 Identities=33% Similarity=0.446 Sum_probs=15.7
Q ss_pred CcEEEEcCCCccHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae 433 (1379)
.++++.+|+|+|||.++.
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 479999999999998754
No 176
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=84.73 E-value=0.8 Score=49.42 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=31.0
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecc
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAP 451 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsP 451 (1379)
..|..+++.||+|+|||..+...+......+.+++|++-
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 457889999999999999876555556667888888764
No 177
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=84.70 E-value=2.3 Score=51.82 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=36.8
Q ss_pred cccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHH--HCCCcEEEEcCCCccHHHHHH
Q 039491 370 KEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYL--ENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 370 ~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L--~~g~sVlV~ApTGSGKTlvae 433 (1379)
...|..++..+..+..+.+.+..+... .+.+..+ .....+++.+|+|+|||.++-
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~---------~~~~~~~g~~~~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRH---------PALFKAIGVKPPRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHC---------HHHHHHHTCCCCCEEEEECSTTSSHHHHHH
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhC---------HHHHHhcCCCCCCcEEEECcCCCCHHHHHH
Confidence 346888888888888888865332110 1222222 335689999999999998764
No 178
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=84.45 E-value=0.5 Score=55.28 Aligned_cols=43 Identities=28% Similarity=0.254 Sum_probs=33.9
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTIS 456 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLs 456 (1379)
.|.-++|.+|+|+|||..+...+......+.+++|+..-..+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~ 102 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD 102 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc
Confidence 4678899999999999987776666667788899987654443
No 179
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=83.94 E-value=2 Score=49.47 Aligned_cols=96 Identities=9% Similarity=0.169 Sum_probs=51.5
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEe-cc-hHHHHHHHHHHHhc---cccEEEE-ecCcccCCCCceee
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT-AP-IKTISNQKYRDFSG---KFDVGLL-TGDVSLRPEASCLI 486 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyl-sP-tkaLsnQk~~~~~~---~f~Vgll-tGdv~in~~a~IlV 486 (1379)
..++.+.+++++|+|||..+..........+.+++++ .. .+.-+.+....+.+ ..+++++ .+....++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~----- 177 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPA----- 177 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHH-----
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHH-----
Confidence 3466788999999999976533333333456677665 22 23332333344433 2367777 544332221
Q ss_pred ecHHHHHHHHhcCcccCCCccEEEEeccCCCC
Q 039491 487 MTTEILRSMLYRGADIIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 487 ~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~ 518 (1379)
..+...+... ..+++++||+|=+-.+.
T Consensus 178 ---~~~~~~l~~~--~~~~yD~VIIDTpg~l~ 204 (320)
T 1zu4_A 178 ---SVVFDAIKKA--KEQNYDLLLIDTAGRLQ 204 (320)
T ss_dssp ---HHHHHHHHHH--HHTTCSEEEEECCCCGG
T ss_pred ---HHHHHHHHHH--HhcCCCEEEEcCCCccc
Confidence 1122222111 12468999999877654
No 180
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=83.86 E-value=2.7 Score=49.37 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=36.9
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae 433 (1379)
....|.++...+.....+.+.+..+.. ++--.... -....++++.+|+|+|||.++.
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~-~~~~~~~~-------~~~~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSL-RPELFTGL-------RAPARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHH-CTTTSCGG-------GCCCSEEEEESSTTSCHHHHHH
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhcc-CHHHhccc-------CCCCceEEEECCCCCCHHHHHH
Confidence 456799999888888888876533211 11000100 1235789999999999998764
No 181
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=82.95 E-value=2.7 Score=48.29 Aligned_cols=120 Identities=15% Similarity=0.053 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhcc
Q 039491 670 VSIWLTLINKLSKKSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRR 749 (1379)
Q Consensus 670 ~~~~~~Li~~L~~~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~r 749 (1379)
-..+..++..+... +.+++||+...+.-+-+-..|...++... |
T Consensus 111 f~~L~~LL~~l~~~-~~kVLIfsq~t~~LDilE~~l~~~~~~y~---------------R-------------------- 154 (328)
T 3hgt_A 111 FSVLRDLINLVQEY-ETETAIVCRPGRTMDLLEALLLGNKVHIK---------------R-------------------- 154 (328)
T ss_dssp HHHHHHHHHHHTTS-CEEEEEEECSTHHHHHHHHHHTTSSCEEE---------------E--------------------
T ss_pred HHHHHHHHHHHHhC-CCEEEEEECChhHHHHHHHHHhcCCCceE---------------e--------------------
Confidence 44566777777664 58999999999999988888876554322 1
Q ss_pred ceEEecCCCChHHHHHHHHHhcCCCeeEEEecccccccCC-----CCCceEEEccccccCCcccccCCHHH-HHHHhccc
Q 039491 750 GIAIHHAGLLPIVKEVIEMLFCRGVVKVLFSTETFAMGVN-----APARTVVFDNLRKFDGREFRQLLPGE-YTQMAGRA 823 (1379)
Q Consensus 750 GIavhHggL~~~~Re~Ve~lF~~G~ikVLVATetla~GIN-----iPa~tvVI~~~~kfDg~~~rpls~~e-yiQmaGRA 823 (1379)
+-|. ....+.. -.+....+-+.|....-|+| +-+.++||. ||. .++|.. .+|.+-||
T Consensus 155 ----lDG~-~~~~~~k----~~~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~----~Ds----dwNp~~d~iQa~~r~ 217 (328)
T 3hgt_A 155 ----YDGH-SIKSAAA----ANDFSCTVHLFSSEGINFTKYPIKSKARFDMLIC----LDT----TVDTSQKDIQYLLQY 217 (328)
T ss_dssp ----SSSC-CC-----------CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEE----CST----TCCTTSHHHHHHHCC
T ss_pred ----CCCC-chhhhhh----cccCCceEEEEECCCCCCcCcccccCCCCCEEEE----ECC----CCCCCChHHHHHHHH
Confidence 2222 1111111 12345555555666666786 566777887 888 666554 68877788
Q ss_pred CCC--CCCCcEEEEEEecCCC
Q 039491 824 GRR--GLDKIGTVVVLCRDEI 842 (1379)
Q Consensus 824 GRr--G~d~~G~vIil~~~~~ 842 (1379)
.|. |....-.+|.++....
T Consensus 218 ~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 218 KRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp C---------CCEEEEEETTS
T ss_pred hhhccCCCCcceEEEEeCCCC
Confidence 876 4444567888887653
No 182
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=82.90 E-value=1.6 Score=61.06 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=38.9
Q ss_pred HHHHHC------CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHH
Q 039491 409 IYYLEN------GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTI 455 (1379)
Q Consensus 409 I~~L~~------g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaL 455 (1379)
++.++. ++++++.+|+|+|||..+.-.+..+.+++.+++|+..--++
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 1467 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccccc
Confidence 555555 78999999999999999877778888889999999876443
No 183
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=82.76 E-value=4.4 Score=49.11 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=35.9
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHH--HCCCcEEEEcCCCccHHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYL--ENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L--~~g~sVlV~ApTGSGKTlvae 433 (1379)
....|.++...+.....+.+++..+.. +. .+..+ .-.+.+++.+|+|+|||..+-
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~-----~~-----~~~~~g~~~p~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKD-----PS-----KFNRIGARMPKGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHC-----TH-----HHHTTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhC-----hH-----HHhhcCCCCCCeEEEECCCCCCHHHHHH
Confidence 456799999888888888775533211 11 11111 123569999999999998753
No 184
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=82.28 E-value=2.8 Score=53.33 Aligned_cols=172 Identities=10% Similarity=0.038 Sum_probs=111.4
Q ss_pred HHHHHHHHHhHcCcccCCC---ccchhhHHhhhccCCchHHHHHHhhhcCCC--CCCHHHHHHHhheee-eeccCCCCCC
Q 039491 1183 DFQGRIDVLKEIGCIDADL---VVQIKGRVACEMNSGEELICTECLFENQLD--DLEPEEAVAIMSAFV-FQQRNTSEPS 1256 (1379)
Q Consensus 1183 e~~~r~~VL~~LgyID~~~---~v~lKGrvAceI~s~~EL~lTEll~~n~l~--~l~p~eiaAlLS~fV-~q~k~~~~p~ 1256 (1379)
..++-++.|.++|+||.++ .+|--||+++...-. --+..++..+.=. .....++..++|+.- |+ ...
T Consensus 472 ~~~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~-----~~~ 544 (715)
T 2va8_A 472 YFDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYIN--PFTADIIRKGLEGHKASCELAYLHLLAFTPDGP-----LVS 544 (715)
T ss_dssp HHHHHHHHHHHTTSEEECSSEEEECHHHHHHHHHTCC--HHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSC-----CCC
T ss_pred HHHHHHHHHHHCcCEeecCCeEeeChHHHHHHHHcCC--HhHHHHHHHHhhhccCCCHHHHHHHhhcCcccc-----cCc
Confidence 4778889999999999764 789999999999873 3344455444322 245556666655432 31 122
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHcC---CCCChhhhhhcCCCccHHHHHHHHhCCCCHHHHHhhcCCCCCceehhhhh
Q 039491 1257 LTPKLSVAKERLYNTAIRLGELQAHFK---VQIDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVR 1333 (1379)
Q Consensus 1257 l~~~L~~~~~~i~~ia~~i~~~~~~~~---v~~~~~~~~~~~~~f~l~~vvyeWA~G~sF~~I~~~Tdv~EG~IVR~i~R 1333 (1379)
+.+.=. +.+.+.+.+ . .... .+....+|.+-..++-..-+.++|.++.+..+|++-..+..|++....+.
T Consensus 545 ~r~~e~---~~l~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~ 617 (715)
T 2va8_A 545 VGRNEE---EELIELLED---L-DCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVET 617 (715)
T ss_dssp CCHHHH---HHHHHHHTT---C-SSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cChHHH---HHHHHHHHh---c-chhhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHHH
Confidence 333211 112211100 0 0111 11111112211023445668999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCHHHHHHHHHHHHhcCCCe
Q 039491 1334 LDETCREFRNAAAIMGNSALYKKMETASNAIKRDI 1368 (1379)
Q Consensus 1334 LdEl~rqv~~Aa~~igd~~L~~Km~~a~~~IkRdI 1368 (1379)
..-+++-+..-|...|...+...+...+..|+.++
T Consensus 618 a~~l~~a~~~i~~~~~~~~~~~~l~~l~~rl~~gv 652 (715)
T 2va8_A 618 MDWLTYSAYHLSRELKLNEHADKLRILNLRVRDGI 652 (715)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999988887777777666554
No 185
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=81.50 E-value=1.5 Score=60.62 Aligned_cols=85 Identities=19% Similarity=0.269 Sum_probs=61.0
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecH---H-
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTT---E- 490 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~Tp---E- 490 (1379)
|+.+.+.+|.|||||.++..+++.+.+.+.+++|+.+-.+|.....+.+- +.++ +++|.-| |
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~G-----------v~~~---~l~~~~p~~~e~ 1496 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLG-----------VDID---NLLCSQPDTGEQ 1496 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTT-----------CCGG---GCEEECCSSHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcC-----------CCHH---HeEEeCCCcHHH
Confidence 36789999999999999999999999999999999998887665533322 1111 1455544 2
Q ss_pred ---HHHHHHhcCcccCCCccEEEEeccCCCC
Q 039491 491 ---ILRSMLYRGADIIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 491 ---iL~smL~~~~~~l~~v~lVI~DEaH~l~ 518 (1379)
++..++..+ .+++||+|.+--+.
T Consensus 1497 ~l~~~~~~~~s~-----~~~~vvvDsv~al~ 1522 (1706)
T 3cmw_A 1497 ALEICDALARSG-----AVDVIVVDSVAALT 1522 (1706)
T ss_dssp HHHHHHHHHHHT-----CCSEEEESCSTTCC
T ss_pred HHHHHHHHHHcC-----CCCEEEEccHHhCC
Confidence 333344333 47899999988765
No 186
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=80.09 E-value=7.4 Score=47.35 Aligned_cols=130 Identities=12% Similarity=0.160 Sum_probs=63.2
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEe-cch-HHHHHHHHHHHhccccEEEEecCcccCCCCceeeecH-H
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT-API-KTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTT-E 490 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyl-sPt-kaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~Tp-E 490 (1379)
.|..+.+++++|||||+..-.........+.++++. ..+ +.-+..+.+.+.....++++..+....+ .+|. +
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p-----~~tV~e 366 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS-----ASVIFD 366 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH-----HHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH-----HHHHHH
Confidence 456788999999999986433322222445666664 443 3222222233322224666544322111 1111 2
Q ss_pred HHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHH---HH---HHc-C--ccceEEEecccCC-ChHHHHHHH
Q 039491 491 ILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEE---VI---IML-P--RHINIVLLSATVP-NTVEFADWI 556 (1379)
Q Consensus 491 iL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~ee---ii---~~L-p--~~vqiIlLSATvp-N~~efa~wl 556 (1379)
.+...+. +++++||+|=+-++... ...+.+ +. ..+ + ++--++.++||.. +..+.+.-+
T Consensus 367 ~l~~a~~------~~~DvVLIDTaGrl~~~--~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f 434 (503)
T 2yhs_A 367 AIQAAKA------RNIDVLIADTAGRLQNK--SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLF 434 (503)
T ss_dssp HHHHHHH------TTCSEEEECCCCSCCCH--HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHH
T ss_pred HHHHHHh------cCCCEEEEeCCCccchh--hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHH
Confidence 2222221 45679999988776432 222222 22 112 1 3345778999866 333444433
No 187
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=79.94 E-value=29 Score=39.00 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=16.6
Q ss_pred CcEEEEcCCCccHHHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~a 435 (1379)
..++|.||.|+|||......
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~ 50 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIG 50 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHH
Confidence 58999999999999865433
No 188
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=78.31 E-value=1.5 Score=52.68 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=24.8
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA 450 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls 450 (1379)
..+++++++|+|||..+.-........+.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 47889999999999865444444445577777664
No 189
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=77.78 E-value=1.9 Score=46.38 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=28.5
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHH-HHhcCCcEEEecc
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFAL-ATKHCTRAVYTAP 451 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~-~l~~~~raIylsP 451 (1379)
.|.-++++|++|+|||..+.-.++. +.+.+..++|++-
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 4678999999999999876554444 4456778888763
No 190
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=77.68 E-value=3 Score=53.52 Aligned_cols=17 Identities=35% Similarity=0.386 Sum_probs=15.3
Q ss_pred cEEEEcCCCccHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae 433 (1379)
++++.+|||+|||.+|-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999998864
No 191
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=77.67 E-value=2.6 Score=54.86 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=17.6
Q ss_pred CCcEEEEcCCCccHHHHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAF 436 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI 436 (1379)
..++++.+|+|+|||.++....
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la 212 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLA 212 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHH
Confidence 3579999999999998765433
No 192
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=77.64 E-value=18 Score=41.54 Aligned_cols=124 Identities=11% Similarity=0.098 Sum_probs=63.2
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEe-cchH-HHHHHHHHHHhccccEEEEecCcccCCCCceeeec-HH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT-APIK-TISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMT-TE 490 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyl-sPtk-aLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~T-pE 490 (1379)
.|.-+.+++|+|||||+..-.........+.++++. .++. .-+.++.+.+.+...+.++.......+. +| .+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~-----~~v~e 202 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPA-----AVAYD 202 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHH-----HHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHH-----HHHHH
Confidence 467788999999999986433322223345555543 3332 2233334444443344455433332221 11 11
Q ss_pred HHHHHHhcCcccCCCccEEEEeccCCCCCc-cchhHHHHHHHHcCccceEEEecccCCC
Q 039491 491 ILRSMLYRGADIIRDIEWVIFDEVHYVNDI-ERGVVWEEVIIMLPRHINIVLLSATVPN 548 (1379)
Q Consensus 491 iL~smL~~~~~~l~~v~lVI~DEaH~l~d~-~rG~v~eeii~~Lp~~vqiIlLSATvpN 548 (1379)
.+..... .+.+++++|.+...... ..-..+..+...+.++..++.+.||...
T Consensus 203 ~l~~~~~------~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~ 255 (328)
T 3e70_C 203 AIQHAKA------RGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN 255 (328)
T ss_dssp HHHHHHH------HTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT
T ss_pred HHHHHHh------ccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH
Confidence 1211111 24568899998775422 1222233333445566778889888654
No 193
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=77.43 E-value=3.9 Score=52.42 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=17.6
Q ss_pred CCCcEEEEcCCCccHHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~ 434 (1379)
.+.++++.+|+|+|||.++..
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~ 226 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEG 226 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHH
Confidence 356899999999999987653
No 194
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=77.00 E-value=3.2 Score=57.54 Aligned_cols=93 Identities=16% Similarity=0.123 Sum_probs=57.3
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEEEecCcccCCCCceeeecHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVSLRPEASCLIMTTEIL 492 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~in~~a~IlV~TpEiL 492 (1379)
.|..+++++++|+|||..+.-.+..++..+.+++|++-.........+.+.... ++-+.. + .|.+.+
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~------p------~t~e~l 100 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQ------P------DTGEQA 100 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEEC------C------SSHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeec------c------CcHHHH
Confidence 378999999999999998877777777888899998765433222222222111 222221 1 144444
Q ss_pred HHHHhcCcccCCCccEEEEeccCCCCC
Q 039491 493 RSMLYRGADIIRDIEWVIFDEVHYVND 519 (1379)
Q Consensus 493 ~smL~~~~~~l~~v~lVI~DEaH~l~d 519 (1379)
..++..-. ...+.++||||++-.+.-
T Consensus 101 ~~ll~~L~-~~~~~~LVVIDSLt~L~~ 126 (1706)
T 3cmw_A 101 LEICDALA-RSGAVDVIVVDSVAALTP 126 (1706)
T ss_dssp HHHHHHHH-HHTCCSEEEESCSTTCCC
T ss_pred HHHHHHHH-hccCCCEEEEcchhhhcc
Confidence 44432110 124688999999998763
No 195
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=76.29 E-value=9.4 Score=45.57 Aligned_cols=120 Identities=15% Similarity=0.131 Sum_probs=61.0
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec--chHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecH-H
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA--PIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTT-E 490 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls--PtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~Tp-E 490 (1379)
.+..+.+++++|+|||+++..........+.+++++. +.+..+..+...+.+..++.++..+.. ..| +
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~---------~~p~~ 167 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDG---------ESPES 167 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTT---------CCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCC---------CCHHH
Confidence 4567888899999999865443333334566766654 344444433344433333434443221 123 2
Q ss_pred HHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHH---HHHcCccceEEEecccC
Q 039491 491 ILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEV---IIMLPRHINIVLLSATV 546 (1379)
Q Consensus 491 iL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eei---i~~Lp~~vqiIlLSATv 546 (1379)
++...+... .-.+.++||+|=+-.+... .....++ ...+.++.-++.+.|+.
T Consensus 168 i~~~~l~~~--~~~~~DvVIIDTaG~l~~d--~~l~~el~~i~~~~~pd~vlLVvDa~t 222 (425)
T 2ffh_A 168 IRRRVEEKA--RLEARDLILVDTAGRLQID--EPLMGELARLKEVLGPDEVLLVLDAMT 222 (425)
T ss_dssp HHHHHHHHH--HHTTCSEEEEECCCCSSCC--HHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred HHHHHHHHH--HHCCCCEEEEcCCCccccc--HHHHHHHHHhhhccCCceEEEEEeccc
Confidence 333333211 0146789999977655421 2223332 22233344456666764
No 196
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=76.16 E-value=2 Score=51.17 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=35.4
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISN 457 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsn 457 (1379)
..+++|.|+||||||+.....+...+..+..++++=|--++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 4689999999999999765566667778889999999877753
No 197
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=76.01 E-value=6.5 Score=49.01 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=21.6
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHH
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALAT 440 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l 440 (1379)
+..|..+++.+|+|+|||..+- +|+..+
T Consensus 57 i~~g~~vll~Gp~GtGKTtlar-~ia~~l 84 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLGQ-AMAELL 84 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHHH-HHHHTS
T ss_pred ccCCCEEEEEeCCCCCHHHHHH-HHhccC
Confidence 4678899999999999998763 344443
No 198
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=75.53 E-value=2 Score=42.91 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=18.2
Q ss_pred HCCCcEEEEcCCCccHHHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae 433 (1379)
..+.+|++.+|+|+|||.+|.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 456799999999999998764
No 199
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=74.97 E-value=5.3 Score=52.01 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=18.1
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALAT 440 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l 440 (1379)
.++++.+|||+|||.++- +++..+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~-~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAK-TLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHH-HHHHHH
T ss_pred eEEEEECCCCCCHHHHHH-HHHHHh
Confidence 379999999999998764 334333
No 200
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=74.96 E-value=2.1 Score=52.88 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=20.0
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALAT 440 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l 440 (1379)
.|..+++.+|+|+|||..+- +|+..+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar-~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK-SIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH-HHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH-HHHHhc
Confidence 57899999999999998764 344443
No 201
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=74.11 E-value=2.6 Score=48.11 Aligned_cols=40 Identities=20% Similarity=0.112 Sum_probs=30.7
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecc
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAP 451 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsP 451 (1379)
+..|.-++|+|++|+|||..+.-.+.....++.+++|++-
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 3457889999999999998766555555566678888863
No 202
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=73.60 E-value=8.6 Score=46.00 Aligned_cols=92 Identities=13% Similarity=0.194 Sum_probs=48.8
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHHhc-CCcEEEec--chHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHH-H
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALATKH-CTRAVYTA--PIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTE-I 491 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l~~-~~raIyls--PtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpE-i 491 (1379)
..+++++++|+|||.++.-........ +.+++++. |.+..+..+...+....++-++.++.. .+|. +
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~---------~dp~~i 171 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVG---------QKPVDI 171 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSS---------SCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCC---------CCHHHH
Confidence 467788999999998754443333344 77777653 333333333333332224444433321 1333 3
Q ss_pred HHHHHhcCcccCCCccEEEEeccCCCC
Q 039491 492 LRSMLYRGADIIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 492 L~smL~~~~~~l~~v~lVI~DEaH~l~ 518 (1379)
+...+.... -.+.++||+|=+-++.
T Consensus 172 ~~~~l~~~~--~~~~D~VIIDTpG~l~ 196 (433)
T 2xxa_A 172 VNAALKEAK--LKFYDVLLVDTAGRLH 196 (433)
T ss_dssp HHHHHHHHH--HTTCSEEEEECCCCCT
T ss_pred HHHHHHHHH--hCCCCEEEEECCCccc
Confidence 233332110 1367899999976553
No 203
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.58 E-value=1.2 Score=53.52 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=40.3
Q ss_pred cccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHH
Q 039491 368 QQKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 368 ~~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlva 432 (1379)
.+..+|.+++..+.....+.+.+-.+ +. +.-|+.-.+ ...+.+++.+|+|+|||+.|
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~p-----l~~pe~f~~~g~---~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLP-----MKRADKFKDMGI---RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHH-----HHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHH-----HhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHH
Confidence 35678999999999999888855332 22 334433222 23578999999999999864
No 204
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=73.25 E-value=2.9 Score=49.01 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=33.3
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKT 454 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtka 454 (1379)
.+.+++|.++||||||+..-..+......+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 46789999999999998876666666777888988888643
No 205
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.01 E-value=1.5 Score=52.12 Aligned_cols=56 Identities=16% Similarity=0.301 Sum_probs=39.8
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlva 432 (1379)
+..+|.+++..+.....+.+.+-- |+. |.-|+.-. +...+.+++.+|+|+|||+.|
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~-----Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIEL-----PVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHH-----HHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-----HHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 567899999999999999886533 322 33333322 223578999999999999864
No 206
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=71.59 E-value=3.3 Score=49.13 Aligned_cols=38 Identities=11% Similarity=0.101 Sum_probs=26.4
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHh------cCCcEEEecc
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATK------HCTRAVYTAP 451 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~------~~~raIylsP 451 (1379)
.|.-+.+++|+|+|||..+...+...+. .+.+++|+.-
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 5678999999999999876533333322 2467888754
No 207
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=70.82 E-value=15 Score=41.71 Aligned_cols=62 Identities=6% Similarity=0.094 Sum_probs=33.0
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEe-cchHHH-HHHHHHHHhccccEEEEec
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT-APIKTI-SNQKYRDFSGKFDVGLLTG 474 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyl-sPtkaL-snQk~~~~~~~f~VglltG 474 (1379)
..|.-+.+.+|+|||||+..-.........+.++.+. .++... +.++.+.+.....++++..
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q 161 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVA 161 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEe
Confidence 4577888999999999986433222222345555554 343222 2222233332224666543
No 208
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=70.67 E-value=2.4 Score=51.92 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=29.5
Q ss_pred CCHHHHHHHHH-HHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEE
Q 039491 401 LDNFQKEAIYY-LENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVY 448 (1379)
Q Consensus 401 L~~~Q~eAI~~-L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIy 448 (1379)
+++.+.+-+.. +..|.+++|++|||||||+.. .+++..+....+++.
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL-~aL~~~i~~~~giit 292 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL-NAIMMFIPPDAKVVS 292 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH-HHHGGGSCTTCCEEE
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhCCCCCCEEE
Confidence 34444444433 478899999999999999853 344444444444443
No 209
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=70.13 E-value=11 Score=45.80 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=40.6
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF 467 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f 467 (1379)
.|....+.+-||||||++..-.+ ...+..+|+++|.+..+.|.+.+++..+
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~---~~~~~p~lvv~~~~~~A~~l~~~l~~~~ 63 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIA---ERHAGPVVLIAPDMQNALRLHDEISQFT 63 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHH---HHSSSCEEEEESSHHHHHHHHHHHHHTC
T ss_pred CCCeEEEeCCCchHHHHHHHHHH---HHhCCCEEEEeCCHHHHHHHHHHHHhhC
Confidence 46788999999999998522111 1335679999999999999999999877
No 210
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=69.81 E-value=13 Score=45.44 Aligned_cols=130 Identities=10% Similarity=0.094 Sum_probs=64.1
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecc--hHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAP--IKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILR 493 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsP--tkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL~ 493 (1379)
..+++++++|+|||..+.-.+......+.+++++.. .+..+.++.........+.++......++ .+++.
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp--------~~i~~ 173 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDP--------VIIAS 173 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCH--------HHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCH--------HHHHH
Confidence 468889999999998765444444455777777765 22333222222222222222221111110 12222
Q ss_pred HHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHH---HHcCccceEEEecccCC-ChHHHHHHHh
Q 039491 494 SMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVI---IMLPRHINIVLLSATVP-NTVEFADWIG 557 (1379)
Q Consensus 494 smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii---~~Lp~~vqiIlLSATvp-N~~efa~wl~ 557 (1379)
..+..- ...+.+++|+|=+=+.... ...++++. ..+.++.-++.+.|+.. +....+..+.
T Consensus 174 ~al~~~--~~~~~DvvIIDTpG~~~~~--~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~ 237 (504)
T 2j37_W 174 EGVEKF--KNENFEIIIVDTSGRHKQE--DSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFK 237 (504)
T ss_dssp HHHHHH--HHTTCCEEEEEECCCCTTC--HHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHH
T ss_pred HHHHHH--HHCCCcEEEEeCCCCcccc--hhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHH
Confidence 222110 1146789999998766421 22333332 22234455778888754 3334444443
No 211
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=69.36 E-value=4.2 Score=52.43 Aligned_cols=57 Identities=28% Similarity=0.479 Sum_probs=37.7
Q ss_pred cccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHH
Q 039491 368 QQKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 368 ~~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlva 432 (1379)
.....|.+++..+.....+.+.+. ||.. +.-|++-- +...+.+++.+|.|+|||+.|
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~-----~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQ-----YPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTT-----TTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHH-----hhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHH
Confidence 356789999999988888887553 3332 22221100 122467999999999999764
No 212
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=68.93 E-value=22 Score=41.33 Aligned_cols=121 Identities=9% Similarity=0.102 Sum_probs=58.6
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEe-cchH-HHHHHHHHHHhccccEEEEecCcc-cCCCCceeeecH
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT-APIK-TISNQKYRDFSGKFDVGLLTGDVS-LRPEASCLIMTT 489 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyl-sPtk-aLsnQk~~~~~~~f~VglltGdv~-in~~a~IlV~Tp 489 (1379)
..|..+.+++|+|||||+..-.........+.++++. .++. .-+.++...+.....++++..+.. ..+ .+|.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p-----~~tv 229 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA-----ATVL 229 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH-----HHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh-----hhhH
Confidence 3577788999999999986433222222345555554 3432 222222233322225666654322 211 1111
Q ss_pred -HHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHH-------HHHHcCccce--EEEecccC
Q 039491 490 -EILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEE-------VIIMLPRHIN--IVLLSATV 546 (1379)
Q Consensus 490 -EiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~ee-------ii~~Lp~~vq--iIlLSATv 546 (1379)
+.+..... ...+.+++|-+....... ..+.+ +...+..... +++|.+|-
T Consensus 230 ~e~l~~~~~------~~~d~~lldt~Gl~~~~~--~~~~eLSkqr~~iaral~~~P~e~lLvLDptt 288 (359)
T 2og2_A 230 SKAVKRGKE------EGYDVVLCDTSGRLHTNY--SLMEELIACKKAVGKIVSGAPNEILLVLDGNT 288 (359)
T ss_dssp HHHHHHHHH------TTCSEEEEECCCCSSCCH--HHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGG
T ss_pred HHHHHHHHh------CCCHHHHHHhcCCChhhh--hHHHHHHHHHHHHHHHHhcCCCceEEEEcCCC
Confidence 22221111 234578999988654221 11221 1123444455 88888884
No 213
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=68.89 E-value=3.2 Score=47.56 Aligned_cols=41 Identities=17% Similarity=0.070 Sum_probs=30.2
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHhc------CCcEEEecchH
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATKH------CTRAVYTAPIK 453 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~~------~~raIylsPtk 453 (1379)
..|.-++++|++|+|||..+...+...... +.+++|++--.
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 346789999999999998776555554433 67889886543
No 214
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=67.73 E-value=4.9 Score=43.24 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=27.7
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHH-hcCCcEEEec
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALAT-KHCTRAVYTA 450 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l-~~~~raIyls 450 (1379)
+..|+-+.+.+|+|||||+.+-..+...+ ..+..++|+.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 45788999999999999987544443333 5666666664
No 215
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=67.59 E-value=5.8 Score=44.72 Aligned_cols=58 Identities=24% Similarity=0.322 Sum_probs=37.8
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae 433 (1379)
....|.+++..+.....+.+.+..+.. + +..|+.- .+..++.+++.+|+|+|||.++-
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~-~---~~~~~~~---~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVE-H---PDKFLKF---GMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHH-C---HHHHHHH---CCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhh-C---HHHHHHc---CCCCCceEEEECCCCcCHHHHHH
Confidence 456799999998888888875533210 0 1111110 02346789999999999998754
No 216
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=67.35 E-value=13 Score=47.76 Aligned_cols=78 Identities=14% Similarity=0.033 Sum_probs=61.3
Q ss_pred CCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHHH
Q 039491 685 LLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVKE 764 (1379)
Q Consensus 685 ~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~Re 764 (1379)
+.+++|.++++.-|.+.+..+.... ..+.-.++..||++....|.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~-----------------------------------~~~gi~v~~l~G~~~~~~r~ 461 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESF-----------------------------------SKFNIHVALLIGATTPSEKE 461 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHH-----------------------------------TCSSCCEEECCSSSCHHHHH
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh-----------------------------------hhcCceEEEEeCCCCHHHHH
Confidence 4789999999999998887775421 00112378899999999999
Q ss_pred HHHHHhcCCCeeEEEecc-cccccCCCCCceEEE
Q 039491 765 VIEMLFCRGVVKVLFSTE-TFAMGVNAPARTVVF 797 (1379)
Q Consensus 765 ~Ve~lF~~G~ikVLVATe-tla~GINiPa~tvVI 797 (1379)
.+...+.+|..+|+|+|. .+...+++....+||
T Consensus 462 ~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 462 KIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred HHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 999999999999999995 455667888877665
No 217
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.28 E-value=1.8 Score=51.92 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=39.1
Q ss_pred cccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHH
Q 039491 368 QQKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 368 ~~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlva 432 (1379)
.+..+|.+++..+.....+.+.+-- |+. |.-|+.-. +...+.+++.+|+|+|||+.|
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~-----pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIEL-----PLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHH-----HHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHH-----HHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 3567899999999988888885533 221 22222221 123478999999999999864
No 218
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=67.16 E-value=6.3 Score=46.98 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHH--CCCcEEEEcCCCccHHHHHHHHHHHHHh
Q 039491 402 DNFQKEAIYYLE--NGDSVFVAAHTSAGKTVVAEYAFALATK 441 (1379)
Q Consensus 402 ~~~Q~eAI~~L~--~g~sVlV~ApTGSGKTlvae~aI~~~l~ 441 (1379)
.+-+..++..+. .|..++|++|||||||... .+++..+.
T Consensus 152 ~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL-~allg~l~ 192 (418)
T 1p9r_A 152 TAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTL-YAGLQELN 192 (418)
T ss_dssp CHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHH-HHHHHHHC
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHhhcC
Confidence 344555665543 4557899999999999853 44545443
No 219
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.89 E-value=2.1 Score=51.12 Aligned_cols=57 Identities=21% Similarity=0.319 Sum_probs=39.8
Q ss_pred cccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHH
Q 039491 368 QQKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 368 ~~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlva 432 (1379)
.+..+|++++..+.....+.+.+-- |+. +.-|+.-.+ ...+.+++.+|+|+|||+.|
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~-----Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVEL-----PLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHH-----HHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHH-----HHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 3567999999999999988885533 222 333333222 23478999999999999864
No 220
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=66.67 E-value=3.9 Score=45.83 Aligned_cols=39 Identities=10% Similarity=0.126 Sum_probs=27.4
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHHhc-CCcEEEec
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALATKH-CTRAVYTA 450 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~-~~raIyls 450 (1379)
+..|+-++++|++|+|||..+...+...... |.+++|+.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3568889999999999998754443333333 55777764
No 221
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=66.15 E-value=2.8 Score=48.23 Aligned_cols=90 Identities=12% Similarity=0.031 Sum_probs=55.0
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhc--CCcEEEecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeec---
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKH--CTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMT--- 488 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~--~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~T--- 488 (1379)
.| .+++.+|.|+|||..++-.++.+.+. +.+++|+..-.++.....+.+--.. .++++..
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~--------------d~llv~~~~~ 92 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDP--------------ERVIHTPVQS 92 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCG--------------GGEEEEECSB
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCH--------------HHeEEEcCCC
Confidence 35 68999999999999988888887776 7899999876666433222221111 1233332
Q ss_pred HHHH-HHHHhcC-cccCCCccEEEEeccCCCC
Q 039491 489 TEIL-RSMLYRG-ADIIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 489 pEiL-~smL~~~-~~~l~~v~lVI~DEaH~l~ 518 (1379)
.|.+ ..++..- ...-..+++||+|=+.-+.
T Consensus 93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred HHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 3333 2221110 0011358999999998774
No 222
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=65.65 E-value=4.1 Score=45.33 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=18.0
Q ss_pred HHCCCcEEEEcCCCccHHHHH
Q 039491 412 LENGDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlva 432 (1379)
+..|..+.+++|||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 456888999999999999864
No 223
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=64.47 E-value=12 Score=47.45 Aligned_cols=154 Identities=12% Similarity=0.144 Sum_probs=95.8
Q ss_pred hHHHHHHHHHhHcCcccCC--CccchhhHHhhhccCCchHHHHHHhhhcCCCC-CCHHHHHHHhhee-eeeccCCCCCCC
Q 039491 1182 PDFQGRIDVLKEIGCIDAD--LVVQIKGRVACEMNSGEELICTECLFENQLDD-LEPEEAVAIMSAF-VFQQRNTSEPSL 1257 (1379)
Q Consensus 1182 ~e~~~r~~VL~~LgyID~~--~~v~lKGrvAceI~s~~EL~lTEll~~n~l~~-l~p~eiaAlLS~f-V~q~k~~~~p~l 1257 (1379)
...++-++.|.++|+|+.+ ..+|--||+++...- +--..+++..+.-.. ....++..++|+. .|+. ..+
T Consensus 453 ~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~-----i~~ 525 (702)
T 2p6r_A 453 YELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYI--DPLTGFIFHDVLSRMELSDIGALHLICRTPDMER-----LTV 525 (702)
T ss_dssp HHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTC--CHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCC-----CCC
T ss_pred HHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHhC--CHHHHHHHHHHhhcccCCHHHHHHHhhCCccccc-----CCC
Confidence 3567778899999999977 689999999999987 344556666665332 4455666655532 1211 111
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHcCC-CCC---hhhhhhcCCCccHHHHHHHHhCCCCHHHHHhhcCCCCCceehhhhh
Q 039491 1258 TPKLSVAKERLYNTAIRLGELQAHFKV-QID---PEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVR 1333 (1379)
Q Consensus 1258 ~~~L~~~~~~i~~ia~~i~~~~~~~~v-~~~---~~~~~~~~~~f~l~~vvyeWA~G~sF~~I~~~Tdv~EG~IVR~i~R 1333 (1379)
-+. + +.+.+...+ . .+.+ .++ ..+|..-..++-..-+.++|.+|.+..+|++...+..||+....+.
T Consensus 526 r~~--e--~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~ 596 (702)
T 2p6r_A 526 RKT--D--SWVEEEAFR---L--RKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVET 596 (702)
T ss_dssp CTT--T--HHHHHHHHH---H--GGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCc--h--HHHHHHHHh---c--cccccCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHHH
Confidence 111 0 112211111 1 1222 222 1011110023445668999999999999999989999999888888
Q ss_pred HHHHHHHHHHhhhhcCCH
Q 039491 1334 LDETCREFRNAAAIMGNS 1351 (1379)
Q Consensus 1334 LdEl~rqv~~Aa~~igd~ 1351 (1379)
..-+++-+...+...|..
T Consensus 597 a~~l~~a~~~i~~~~g~~ 614 (702)
T 2p6r_A 597 AEWLSNAMNRIAEEVGNT 614 (702)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCHH
Confidence 888888877777777754
No 224
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=64.20 E-value=25 Score=39.28 Aligned_cols=132 Identities=18% Similarity=0.213 Sum_probs=73.5
Q ss_pred HHHHHHHHhHcCcccCCCccchhhHHhhhccCCchHHHHHHhhhc-CCCCCCH-HHHHHHhheeeeeccCCCCCCCChHH
Q 039491 1184 FQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFEN-QLDDLEP-EEAVAIMSAFVFQQRNTSEPSLTPKL 1261 (1379)
Q Consensus 1184 ~~~r~~VL~~LgyID~~~~v~lKGrvAceI~s~~EL~lTEll~~n-~l~~l~p-~eiaAlLS~fV~q~k~~~~p~l~~~L 1261 (1379)
..+=++.|..||.||+++.+|--||..+++-- +--++-+|+.+ .++-+++ --|||+||. + .|-..|.-
T Consensus 20 l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl--~P~lakmLl~a~~~~c~~~~l~iaA~Ls~---~-----~~f~~p~~ 89 (270)
T 3i4u_A 20 LITAMEQLYTLGALDDEGLLTRLGRRMAEFPL--EPMLCKMLIMSVHLGCSEEMLTIVSMLSV---Q-----NVFYRPKD 89 (270)
T ss_dssp HHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCS--CHHHHHHHHHHHHTTCHHHHHHHHHHHTS---S-----CCBCCCGG
T ss_pred HHHHHHHHHHcCCcCCCCCccHHHHHHHhCCC--CHHHHHHHHHhhhcCCHHHHHHHHHHHCC---C-----ccccCCch
Confidence 45567899999999999999999999999986 44444444444 4444433 346666664 1 12222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhcCCCccHHHHHHHHhCCCCHHHHHhhcCCCCCceehhhhhHHHHHHHH
Q 039491 1262 SVAKERLYNTAIRLGELQAHFKVQIDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREF 1341 (1379)
Q Consensus 1262 ~~~~~~i~~ia~~i~~~~~~~~v~~~~~~~~~~~~~f~l~~vvyeWA~G~sF~~I~~~Tdv~EG~IVR~i~RLdEl~rqv 1341 (1379)
.+ + .++ +...+......| ...++++..+|.+...=.+-|.- .+.=.|.+++..++-+|+
T Consensus 90 ~~--~----~a~-----~~~~~f~~~~sD------~ltlLn~~~~~~~~~~~~~wC~~----~fL~~~~l~~~~~ir~QL 148 (270)
T 3i4u_A 90 KQ--A----LAD-----QKKAKFHQTEGD------HLTLLAVYNSWKNNKFSNPWCYE----NFIQARSLRRAQDIRKQM 148 (270)
T ss_dssp GH--H----HHH-----HHHHTTCBTTBH------HHHHHHHHHHHHHTTTCHHHHHH----TTBCHHHHHHHHHHHHHH
T ss_pred hH--H----HHH-----HHHHHccCCCCh------HHHHHHHHHHHHHcCchhhHHHH----hcCCHHHHHHHHHHHHHH
Confidence 10 0 011 112223222233 34677888888654321233332 223345666777777777
Q ss_pred HHhhh
Q 039491 1342 RNAAA 1346 (1379)
Q Consensus 1342 ~~Aa~ 1346 (1379)
....+
T Consensus 149 ~~~l~ 153 (270)
T 3i4u_A 149 LGIMD 153 (270)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
No 225
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.24 E-value=2 Score=51.83 Aligned_cols=56 Identities=16% Similarity=0.316 Sum_probs=38.8
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCC-CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFE-LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFe-L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlva 432 (1379)
+..+|++++..+.....+.+.+-- |+. +.-|+.-- +...+.+|+.+|+|+|||+.|
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~-----pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVEL-----PLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHH-----HHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHH-----HhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 457899999999999999886532 211 22222211 234578999999999999864
No 226
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=61.77 E-value=12 Score=44.83 Aligned_cols=108 Identities=21% Similarity=0.110 Sum_probs=59.4
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEE
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVY 448 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIy 448 (1379)
....|..+...+.....+..++..... ....++++++.+|+|+|||.+|. +++..+......+.
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~~~---------------~~~~~~~iLl~GppGtGKT~la~-ala~~l~~~~~~~~ 95 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELIKS---------------KKMAGRAVLLAGPPGTGKTALAL-AIAQELGSKVPFCP 95 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHHT---------------TCCTTCEEEEECCTTSSHHHHHH-HHHHHHCTTSCEEE
T ss_pred hhhchhhccCHHHHHHHHHHHHHHHHh---------------CCCCCCeEEEECCCcCCHHHHHH-HHHHHhCCCceEEE
Confidence 455688888888777766654322110 01134689999999999998763 44444322222222
Q ss_pred ecchHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHHHHHHhcCc-ccCCCccEEEEeccCCCCC
Q 039491 449 TAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGA-DIIRDIEWVIFDEVHYVND 519 (1379)
Q Consensus 449 lsPtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL~smL~~~~-~~l~~v~lVI~DEaH~l~d 519 (1379)
+. +..-... .+...+.+...+.... .....-.+|++||+|.+..
T Consensus 96 ~~-----------------------~~~~~~~----~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~ 140 (456)
T 2c9o_A 96 MV-----------------------GSEVYST----EIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTP 140 (456)
T ss_dssp EE-----------------------GGGGCCS----SSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEE
T ss_pred Ee-----------------------HHHHHHH----hhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhccc
Confidence 22 2111111 1344455555443321 0123457899999998863
No 227
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=60.53 E-value=4.6 Score=49.11 Aligned_cols=40 Identities=5% Similarity=-0.017 Sum_probs=30.6
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHHhc-CCcEEEecc
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALATKH-CTRAVYTAP 451 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~-~~raIylsP 451 (1379)
+..|.-++|+|++|+|||..+.-.+...... +.+++|++-
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 4467789999999999998766555555554 778888864
No 228
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=59.77 E-value=5.2 Score=46.22 Aligned_cols=40 Identities=10% Similarity=0.009 Sum_probs=29.3
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHh------cCCcEEEecchH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATK------HCTRAVYTAPIK 453 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~------~~~raIylsPtk 453 (1379)
.|.-+++.|++|+|||..+...+..+.. .+.+++|+.--.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4567899999999999877655555433 367888887543
No 229
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=59.56 E-value=8.1 Score=39.87 Aligned_cols=36 Identities=25% Similarity=0.255 Sum_probs=24.1
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEe
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 449 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyl 449 (1379)
.|..+++.++.|||||.++.......-..+.++.++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 456789999999999997654333333345555555
No 230
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=58.96 E-value=6.4 Score=41.31 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=17.7
Q ss_pred HCCCcEEEEcCCCccHHHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae 433 (1379)
..++.+++.+++|||||.++-
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 467899999999999999754
No 231
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=58.79 E-value=6.9 Score=45.81 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=23.8
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHHh-c-CCcEEE
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALATK-H-CTRAVY 448 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l~-~-~~raIy 448 (1379)
+..|..+++++|||||||...- +++..+. . ..++++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~-~l~~~~~~~~~g~I~~ 170 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIA-SMIDYINQTKSYHIIT 170 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHH-HHHHHHHHHSCCEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHH-HHHhhcCcCCCcEEEE
Confidence 3567889999999999998643 3333333 2 345544
No 232
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=58.04 E-value=8.1 Score=43.15 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=16.7
Q ss_pred CcEEEEcCCCccHHHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~a 435 (1379)
..+++.+|+|+|||.++-..
T Consensus 48 ~~~ll~G~~GtGKt~la~~l 67 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTL 67 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHH
Confidence 47999999999999887533
No 233
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=57.91 E-value=5.9 Score=44.21 Aligned_cols=55 Identities=22% Similarity=0.370 Sum_probs=30.1
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHH--HCCCcEEEEcCCCccHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYL--ENGDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L--~~g~sVlV~ApTGSGKTlva 432 (1379)
+...|.+++..+...+.+.+.+-. |+. ..+++..+ .-.+.+++.+|.|+|||..+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~-----~~~----~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILA-----PVR----NPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTH-----HHH----SHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-----Hhh----CHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 456899999888888888764322 110 11233322 22345999999999999864
No 234
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.50 E-value=15 Score=43.86 Aligned_cols=58 Identities=14% Similarity=0.215 Sum_probs=38.6
Q ss_pred cccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHH
Q 039491 368 QQKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 368 ~~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlva 432 (1379)
.+..+|++++..+.....+.+.+-.+.. + +.-|+.-. +...+.+++.+|+|+|||..|
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~-~---p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLV-Q---ADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHH-C---HHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHh-C---HHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 3567899999999988888875432211 0 22222211 123567999999999999865
No 235
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=57.24 E-value=6.8 Score=40.46 Aligned_cols=20 Identities=5% Similarity=0.200 Sum_probs=16.9
Q ss_pred CCCcEEEEcCCCccHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae 433 (1379)
.|+-+++++|+|||||..+-
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57788999999999998643
No 236
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=57.01 E-value=15 Score=42.23 Aligned_cols=20 Identities=30% Similarity=0.536 Sum_probs=17.1
Q ss_pred CCCcEEEEcCCCccHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae 433 (1379)
.+.++++.+|+|+|||.+|.
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45689999999999999764
No 237
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=56.82 E-value=8.5 Score=41.23 Aligned_cols=32 Identities=25% Similarity=0.181 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHCCCcEEEEcCCCccHHHHHHH
Q 039491 403 NFQKEAIYYLENGDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 403 ~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~ 434 (1379)
.-|+.++..+..|+-+.+.+|.|||||+..-.
T Consensus 10 ~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~ 41 (208)
T 3b85_A 10 LGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMA 41 (208)
T ss_dssp HHHHHHHHHHHHCSEEEEECCTTSSTTHHHHH
T ss_pred HhHHHHHHhccCCCEEEEECCCCCCHHHHHHH
Confidence 34677888899999999999999999986543
No 238
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=56.79 E-value=21 Score=45.22 Aligned_cols=173 Identities=14% Similarity=0.128 Sum_probs=104.8
Q ss_pred hHHHHHHHHHhHcCccc-CCC---ccchhhHHhhhccCCchHHHHHHhhhcCCC---CCCHHHHHHHhheee-eeccCCC
Q 039491 1182 PDFQGRIDVLKEIGCID-ADL---VVQIKGRVACEMNSGEELICTECLFENQLD---DLEPEEAVAIMSAFV-FQQRNTS 1253 (1379)
Q Consensus 1182 ~e~~~r~~VL~~LgyID-~~~---~v~lKGrvAceI~s~~EL~lTEll~~n~l~---~l~p~eiaAlLS~fV-~q~k~~~ 1253 (1379)
...+.-++.|.++|+|+ .++ ..|--|+++++..-.. -...++....=. .-...++-.++|..- |+
T Consensus 454 ~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~----- 526 (720)
T 2zj8_A 454 EKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDP--YTAKMFKDKMEEVVKDPNPIGIFHLISLTPDIT----- 526 (720)
T ss_dssp HHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHTCCH--HHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCC-----
T ss_pred HHHHHHHHHHHHCCCeeECCCCcEeeChHHHHHHHHcCCH--HHHHHHHHHHHhhccCCCHHHHHHHhccCcccc-----
Confidence 35677788999999998 544 7899999999998733 334444433211 134456666665421 21
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHc--CCCCCh--hh--hhhcCCCccHHHHHHHHhCCCCHHHHHhhcCCCCCce
Q 039491 1254 EPSLTPKLSVAKERLYNTAIRLGELQAHF--KVQIDP--EE--YARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLI 1327 (1379)
Q Consensus 1254 ~p~l~~~L~~~~~~i~~ia~~i~~~~~~~--~v~~~~--~~--~~~~~~~f~l~~vvyeWA~G~sF~~I~~~Tdv~EG~I 1327 (1379)
...+.+.=. +.+.++..+ ...+. .+++.. ++ |.....++-..-+.+.|.++.+..+|++...+..||+
T Consensus 527 ~i~~r~~e~---~~l~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl 600 (720)
T 2zj8_A 527 PFNYSKREF---ERLEEEYYE---FKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDI 600 (720)
T ss_dssp CCCCCHHHH---HHHHHHHHH---HGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHH
T ss_pred ccccCHHHH---HHHHHHHHh---ccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHhH
Confidence 112222211 122222111 11111 112111 11 1110023445668999999999999999999999999
Q ss_pred ehhhhhHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhcCCC
Q 039491 1328 VRTIVRLDETCREFRNAAAIMGNSALYKKMETASNAIKRD 1367 (1379)
Q Consensus 1328 VR~i~RLdEl~rqv~~Aa~~igd~~L~~Km~~a~~~IkRd 1367 (1379)
....+...-+++-+..-+...|...+...|.+-+..|.-+
T Consensus 601 ~~~~~~a~~l~~a~~~i~~~~g~~~~~~~l~~l~~rl~~g 640 (720)
T 2zj8_A 601 YRIVETAEWLVYSLKEIAKVLGAYEIVDYLETLRVRVKYG 640 (720)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHcC
Confidence 9999988889999988888889876666666555554433
No 239
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=56.77 E-value=6.5 Score=45.77 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.6
Q ss_pred HHCCCcEEEEcCCCccHHHHH
Q 039491 412 LENGDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlva 432 (1379)
+..|+.+++++|||||||...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 578999999999999999853
No 240
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=56.46 E-value=18 Score=40.16 Aligned_cols=57 Identities=16% Similarity=0.254 Sum_probs=36.4
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae 433 (1379)
....|.+++..+.....+.+.+..+.. +|--+.. + ...+..+++.+|+|+|||.++.
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~-~~~~~~~-----~--~~~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSV-RPELFTG-----L--RAPAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHH-CGGGSCG-----G--GCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhh-CHHHHhc-----C--CCCCCeEEEECcCCCCHHHHHH
Confidence 456899999888888888775532211 1100000 0 0235789999999999998754
No 241
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=56.37 E-value=8.3 Score=44.89 Aligned_cols=28 Identities=21% Similarity=0.133 Sum_probs=20.1
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHh
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATK 441 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~ 441 (1379)
..+..++|++|||||||... .+++..+.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL-~~l~g~~~ 148 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTL-AAMLDYLN 148 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHH-HHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH-HHHHhccc
Confidence 45668999999999999863 34444443
No 242
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=55.91 E-value=29 Score=40.32 Aligned_cols=79 Identities=11% Similarity=0.034 Sum_probs=58.6
Q ss_pred CCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHH
Q 039491 683 KSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIV 762 (1379)
Q Consensus 683 ~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~ 762 (1379)
.....+||.++++.-|.+.++.+....- ..-.++..|||.+..+
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~------------------------------------~~~~v~~~~g~~~~~~ 105 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLAD------------------------------------EKVKIFGFYSSMKKEE 105 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCC------------------------------------SSCCEEECCTTSCHHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHcc------------------------------------CCceEEEEECCCChhh
Confidence 3457899999999999999988866321 1123788999999999
Q ss_pred HHHHHHHhcCCCeeEEEeccccc----ccCCCCCceEEE
Q 039491 763 KEVIEMLFCRGVVKVLFSTETFA----MGVNAPARTVVF 797 (1379)
Q Consensus 763 Re~Ve~lF~~G~ikVLVATetla----~GINiPa~tvVI 797 (1379)
|......+..|..+|+|+|.-.- .-++.....+||
T Consensus 106 ~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iV 144 (414)
T 3oiy_A 106 KEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVF 144 (414)
T ss_dssp HHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEE
T ss_pred HHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEE
Confidence 88888889999999999996322 124455555554
No 243
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=55.84 E-value=10 Score=39.80 Aligned_cols=33 Identities=15% Similarity=0.369 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHH
Q 039491 401 LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 401 L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~ 434 (1379)
.+.-+..++ ....|..+++.++.|||||.++-.
T Consensus 12 ~~~~~~~~~-~~~~g~~i~l~G~sGsGKSTl~~~ 44 (200)
T 3uie_A 12 VEKVDRQRL-LDQKGCVIWVTGLSGSGKSTLACA 44 (200)
T ss_dssp CCHHHHHHH-HTSCCEEEEEECSTTSSHHHHHHH
T ss_pred cCHHHHHHh-cCCCCeEEEEECCCCCCHHHHHHH
Confidence 444444333 235677889999999999987643
No 244
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=55.74 E-value=12 Score=40.86 Aligned_cols=57 Identities=25% Similarity=0.289 Sum_probs=35.2
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae 433 (1379)
....|.+++..+...+.+.+++..+.. | ..++.- .+.....+++.+|+|+|||.++-
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~--~---~~~~~~---~~~~~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLRE--P---SRFQKL---GGKIPKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHC--G---GGC--------CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhC--H---HHHHHc---CCCCCCeEEEECcCCCCHHHHHH
Confidence 456799999888888877765433211 1 011110 01224579999999999998754
No 245
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=55.70 E-value=6.6 Score=41.63 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=16.4
Q ss_pred CCCcEEEEcCCCccHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlva 432 (1379)
.|.-+++++|+|||||.++
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5777899999999999864
No 246
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=55.67 E-value=10 Score=41.36 Aligned_cols=112 Identities=17% Similarity=0.176 Sum_probs=57.1
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHhcCCcEE--Eecc--hHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATKHCTRAV--YTAP--IKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEIL 492 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~~~~raI--ylsP--tkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL 492 (1379)
++++.++.|.|||..+.-........|.+++ ++-| ..+... ..+.+... ..+.+. .. ...+--+....+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~a-l~~gl~~~-~~~~~~----~~-~~~~~e~~l~~~ 80 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEA-LLNGLPQQ-PLLRTE----YR-GMTLEEMDLDAL 80 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHH-HHTTSCBC-CCEEEE----ET-TEEEEECCHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHH-HhcCcccc-Ccceee----cC-CcccccccHHHH
Confidence 6899999999999986555445556676654 3333 111111 11111111 111111 00 111111233322
Q ss_pred HHHHhcCcccCCCccEEEEeccCCCC--CccchhHHHHHHHHcCccceEEEecc
Q 039491 493 RSMLYRGADIIRDIEWVIFDEVHYVN--DIERGVVWEEVIIMLPRHINIVLLSA 544 (1379)
Q Consensus 493 ~smL~~~~~~l~~v~lVI~DEaH~l~--d~~rG~v~eeii~~Lp~~vqiIlLSA 544 (1379)
+. +..++||+||.=+.+ .......|+.+...++..+-++..+-
T Consensus 81 ---L~------~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 81 ---LK------AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp ---HH------HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred ---Hh------cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 22 246799999976653 22234467777777777666664433
No 247
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=55.48 E-value=7.2 Score=44.18 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=18.1
Q ss_pred HCCCcEEEEcCCCccHHHHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~ 434 (1379)
..+.+|++.++||+|||.+|-.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~ 44 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARA 44 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHH
Confidence 3467899999999999987643
No 248
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=54.98 E-value=15 Score=42.67 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=22.4
Q ss_pred cEEE-EcCCCccHHHHHHHHHHHHHhcCCcEEEec
Q 039491 417 SVFV-AAHTSAGKTVVAEYAFALATKHCTRAVYTA 450 (1379)
Q Consensus 417 sVlV-~ApTGSGKTlvae~aI~~~l~~~~raIyls 450 (1379)
.+.| .+.-|.|||.++.-......+.|.+++++-
T Consensus 145 vIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 145 VVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3444 458899999876544333335688888874
No 249
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=54.74 E-value=6.1 Score=45.73 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCccHHHH
Q 039491 415 GDSVFVAAHTSAGKTVV 431 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlv 431 (1379)
+..++|++|||+|||.+
T Consensus 40 ~~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRL 56 (339)
T ss_dssp CEEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 44689999999999986
No 250
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=54.68 E-value=6.4 Score=41.97 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=23.2
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHH-----hcCCcEEEecch
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALAT-----KHCTRAVYTAPI 452 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l-----~~~~raIylsPt 452 (1379)
-.++.|+.|||||..+..-+.... +.|.+.+|++.+
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~ 47 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNI 47 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecC
Confidence 468999999999997644333332 334366665554
No 251
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=54.63 E-value=6.2 Score=41.58 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=18.4
Q ss_pred HHCCCcEEEEcCCCccHHHHHH
Q 039491 412 LENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae 433 (1379)
+..|.-+++++|+|||||.++.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHH
Confidence 4567889999999999998653
No 252
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=54.59 E-value=17 Score=37.16 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=23.6
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTI 455 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaL 455 (1379)
.+++.++.|||||.++.......-..+..+.++ |+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~-~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII-NYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE-EHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE-ECChH
Confidence 478999999999998654333222234445555 54333
No 253
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=54.57 E-value=8.2 Score=39.59 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCccHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae 433 (1379)
+..+++++++|||||.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5679999999999999764
No 254
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=54.53 E-value=17 Score=41.78 Aligned_cols=17 Identities=41% Similarity=0.575 Sum_probs=14.7
Q ss_pred cEEEEcCCCccHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae 433 (1379)
.++|++|||||||.++.
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999998753
No 255
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=54.24 E-value=12 Score=38.95 Aligned_cols=34 Identities=24% Similarity=0.085 Sum_probs=22.1
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA 450 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls 450 (1379)
-+.++++.|||||......+......+.++-++.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 4778999999999876544433334555554443
No 256
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=53.05 E-value=6.5 Score=40.04 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCccHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlva 432 (1379)
+..++++++.|||||.++
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999875
No 257
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=52.02 E-value=14 Score=39.06 Aligned_cols=48 Identities=13% Similarity=0.156 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHH--hcCCcEEEec
Q 039491 401 LDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALAT--KHCTRAVYTA 450 (1379)
Q Consensus 401 L~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l--~~~~raIyls 450 (1379)
..+.++.. ..+..|..+++.++.|||||.++-.. ...+ ..|..++++.
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~~l-~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTLAVEL-EHQLVRDRRVHAYRLD 61 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHHHHHH-HHHHHHHHCCCEEEEC
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHHHHHH-HHHhccccCCcEEEEC
Confidence 34555555 33566778899999999999876433 2333 3454566654
No 258
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=51.91 E-value=6.9 Score=39.17 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=15.7
Q ss_pred cEEEEcCCCccHHHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~a 435 (1379)
.+++++++|||||.++...
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999986544
No 259
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=51.76 E-value=13 Score=42.19 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=22.8
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEe
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 449 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyl 449 (1379)
.|+.+.+.+|+|||||+..-.........+.++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 366788999999999986433322222344555554
No 260
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=51.75 E-value=7.8 Score=40.35 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=17.6
Q ss_pred HCCCcEEEEcCCCccHHHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae 433 (1379)
..|.-+.+.+|+|||||.++-
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHH
Confidence 467788999999999998743
No 261
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=51.49 E-value=8 Score=40.28 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=17.8
Q ss_pred HCCCcEEEEcCCCccHHHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae 433 (1379)
..|.-+.+.+|+|||||.++-
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 467889999999999998753
No 262
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=51.44 E-value=45 Score=33.54 Aligned_cols=85 Identities=18% Similarity=0.125 Sum_probs=57.4
Q ss_pred EEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEEEecCccc-----------CCCCceeee
Q 039491 420 VAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVSL-----------RPEASCLIM 487 (1379)
Q Consensus 420 V~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~i-----------n~~a~IlV~ 487 (1379)
+..+....|... +..++... .+.++|+.++++.-+...+..+.+.. .+..++|+.+. +....|+|+
T Consensus 9 ~~~~~~~~K~~~-l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 86 (165)
T 1fuk_A 9 VNVEEEEYKYEC-LTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIS 86 (165)
T ss_dssp EEEESGGGHHHH-HHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEE
T ss_pred EECCcchhHHHH-HHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 333333336543 22333332 45789999999999999999998866 89999998762 345689998
Q ss_pred cHHHHHHHHhcCcccCCCccEEEEe
Q 039491 488 TTEILRSMLYRGADIIRDIEWVIFD 512 (1379)
Q Consensus 488 TpEiL~smL~~~~~~l~~v~lVI~D 512 (1379)
|. .+.+|- .+.++++||.-
T Consensus 87 T~-----~~~~G~-d~~~~~~Vi~~ 105 (165)
T 1fuk_A 87 TD-----LLARGI-DVQQVSLVINY 105 (165)
T ss_dssp EG-----GGTTTC-CCCSCSEEEES
T ss_pred cC-----hhhcCC-CcccCCEEEEe
Confidence 83 444553 46678888763
No 263
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=51.25 E-value=8.2 Score=40.67 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=15.4
Q ss_pred CCCcEEEEcCCCccHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlva 432 (1379)
.|+-+.+++|+|||||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778999999999999864
No 264
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=51.08 E-value=11 Score=52.92 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=34.8
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecch
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPI 452 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPt 452 (1379)
.|+++++.+|+|+|||..+...+..+.++|.+++|++=.
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~e 1118 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 1118 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcc
Confidence 568999999999999999988888899999999998643
No 265
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=51.04 E-value=6.7 Score=45.14 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=17.8
Q ss_pred HHCCCcEEEEcCCCccHHHH
Q 039491 412 LENGDSVFVAAHTSAGKTVV 431 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlv 431 (1379)
+..|+.+.+++|||||||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 46789999999999999985
No 266
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=50.88 E-value=10 Score=43.05 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=22.6
Q ss_pred HHHHHCCCcEEEEcCCCccHHHHHHHHHHHHH
Q 039491 409 IYYLENGDSVFVAAHTSAGKTVVAEYAFALAT 440 (1379)
Q Consensus 409 I~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l 440 (1379)
...+..+.++++.+|+|+|||..+. +++..+
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la~-~la~~~ 70 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSVN-TLAKTM 70 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHHH-HHHHHT
T ss_pred HHHHHcCCeEEEECCCCCcHHHHHH-HHHHHh
Confidence 3445668899999999999998754 334433
No 267
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=50.75 E-value=23 Score=38.34 Aligned_cols=55 Identities=18% Similarity=0.194 Sum_probs=34.8
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHH--HCCCcEEEEcCCCccHHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYL--ENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L--~~g~sVlV~ApTGSGKTlvae 433 (1379)
...+|.+++..+.....+.++...+.. ..++..+ .-.+.+++.+|+|+|||..+-
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~----------~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKN----------PSRFHEMGARIPKGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHC----------HHHHHHTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHC----------HHHHHHcCCCCCCeEEEECCCCCCHHHHHH
Confidence 456799988888777777664432210 1223222 113459999999999998653
No 268
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=50.69 E-value=68 Score=32.14 Aligned_cols=64 Identities=22% Similarity=0.184 Sum_probs=49.7
Q ss_pred cCCcEEEecchHHHHHHHHHHHhccc-cEEEEecCccc-----------CCCCceeeecHHHHHHHHhcCcccCCCccEE
Q 039491 442 HCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVSL-----------RPEASCLIMTTEILRSMLYRGADIIRDIEWV 509 (1379)
Q Consensus 442 ~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lV 509 (1379)
.+.++|+.++++.-+...++.+.+.. .+..++|+.+. +....|+|+| +.+.+|- .+.++++|
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~Gl-d~~~~~~V 107 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DVAARGI-DIENISLV 107 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGTTTC-CCSCCSEE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----ChhhcCC-chhcCCEE
Confidence 46789999999999999999998876 89999998752 3456889988 3344453 45678888
Q ss_pred EE
Q 039491 510 IF 511 (1379)
Q Consensus 510 I~ 511 (1379)
|.
T Consensus 108 i~ 109 (163)
T 2hjv_A 108 IN 109 (163)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 269
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=50.48 E-value=26 Score=36.35 Aligned_cols=80 Identities=19% Similarity=0.109 Sum_probs=49.4
Q ss_pred CccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEEEecCcccC-----------CCCceeeecHHHH
Q 039491 425 SAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVSLR-----------PEASCLIMTTEIL 492 (1379)
Q Consensus 425 GSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~in-----------~~a~IlV~TpEiL 492 (1379)
.+.|... ++-++.....+.++|+.++++.-+...++.+.... .+..++|+.+.. ....|+|+|.
T Consensus 29 ~~~K~~~-L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~--- 104 (185)
T 2jgn_A 29 ESDKRSF-LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA--- 104 (185)
T ss_dssp GGGHHHH-HHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC---
T ss_pred cHHHHHH-HHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC---
Confidence 4567542 33344444456889999999999999999998876 899999987632 3467888883
Q ss_pred HHHHhcCcccCCCccEEEE
Q 039491 493 RSMLYRGADIIRDIEWVIF 511 (1379)
Q Consensus 493 ~smL~~~~~~l~~v~lVI~ 511 (1379)
.+.+|- .+.++++||.
T Consensus 105 --~~~~Gl-di~~~~~VI~ 120 (185)
T 2jgn_A 105 --VAARGL-DISNVKHVIN 120 (185)
T ss_dssp ---------CCCSBSEEEE
T ss_pred --hhhcCC-CcccCCEEEE
Confidence 233332 4567787775
No 270
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=50.43 E-value=6.4 Score=40.61 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=18.1
Q ss_pred HHCCCcEEEEcCCCccHHHHHH
Q 039491 412 LENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae 433 (1379)
+..|..+++.+|.|||||+++-
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHH
Confidence 3467789999999999998643
No 271
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=50.23 E-value=14 Score=38.88 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCccHHHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~a 435 (1379)
+.-+.+.++.|||||+++...
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l 42 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQL 42 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 456889999999999876433
No 272
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=50.22 E-value=21 Score=41.25 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=36.8
Q ss_pred cccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHH
Q 039491 370 KEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 370 ~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae 433 (1379)
...|.++...+.....+.+.+..+.. +|-.+. . .......+++.+|+|+|||.++.
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~-~~~~~~---~----~~~~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPML-RPDIFT---G----LRGPPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHH-CTTTSC---G----GGSCCSEEEEESSTTSSHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhh-ChHhHh---h----ccCCCceEEEECCCCCCHHHHHH
Confidence 46799999888888888876543211 111111 0 01235689999999999998764
No 273
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=50.17 E-value=13 Score=40.30 Aligned_cols=35 Identities=17% Similarity=0.371 Sum_probs=25.1
Q ss_pred cEEEEc-CCCccHHHHHHHHHHHHHhcCCcEEEecc
Q 039491 417 SVFVAA-HTSAGKTVVAEYAFALATKHCTRAVYTAP 451 (1379)
Q Consensus 417 sVlV~A-pTGSGKTlvae~aI~~~l~~~~raIylsP 451 (1379)
.++|++ .||+|||++....+....++|.++.|.=|
T Consensus 6 ~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KP 41 (228)
T 3of5_A 6 KFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKP 41 (228)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecc
Confidence 466666 59999999876555555567888888544
No 274
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=49.66 E-value=15 Score=37.58 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=17.2
Q ss_pred CCCcEEEEcCCCccHHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~ 434 (1379)
+|..+++.++.|||||.++-.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~ 24 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMA 24 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 466788999999999987543
No 275
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=49.45 E-value=11 Score=39.03 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=17.1
Q ss_pred CCCcEEEEcCCCccHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae 433 (1379)
++..++++++.|||||.++-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999998764
No 276
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=49.41 E-value=14 Score=45.24 Aligned_cols=41 Identities=20% Similarity=0.167 Sum_probs=30.4
Q ss_pred HHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecch
Q 039491 412 LENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPI 452 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPt 452 (1379)
+..|..+++.+++|+|||..+...+......+.+++|+++-
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 35678899999999999987655444444457788888754
No 277
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=49.38 E-value=15 Score=40.72 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=17.2
Q ss_pred CCCcEEEEcCCCccHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae 433 (1379)
...++++.+|+|+|||.++.
T Consensus 49 ~~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35789999999999998764
No 278
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=49.08 E-value=11 Score=39.83 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=25.7
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHh------cCCcEEEecc
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATK------HCTRAVYTAP 451 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~------~~~raIylsP 451 (1379)
..|+-+.+.+|+|||||..+...+..... ....++|+..
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~ 67 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 67 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEES
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEEC
Confidence 35778999999999999865443332222 2445777654
No 279
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=48.94 E-value=15 Score=37.74 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=20.6
Q ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEe
Q 039491 418 VFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 449 (1379)
Q Consensus 418 VlV~ApTGSGKTlvae~aI~~~l~~~~raIyl 449 (1379)
+++.++.|||||+++.......-..+..++.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 68899999999998765433332335555443
No 280
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=48.84 E-value=8.5 Score=43.72 Aligned_cols=39 Identities=18% Similarity=0.133 Sum_probs=27.6
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHH-Hh-----------cC----CcEEEecch
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALA-TK-----------HC----TRAVYTAPI 452 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~-l~-----------~~----~raIylsPt 452 (1379)
.|.-+++++++|+|||..+...+... +. .+ .+++|++--
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e 151 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTE 151 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECC
Confidence 46778999999999998766555443 22 23 688888754
No 281
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=48.40 E-value=10 Score=41.69 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=13.9
Q ss_pred cEEEEcCCCccHHHHH
Q 039491 417 SVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 417 sVlV~ApTGSGKTlva 432 (1379)
-+++++|||||||.++
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999865
No 282
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=48.40 E-value=12 Score=37.82 Aligned_cols=20 Identities=20% Similarity=0.489 Sum_probs=16.8
Q ss_pred CCCcEEEEcCCCccHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae 433 (1379)
.+..+++.++.|||||.++-
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35679999999999998753
No 283
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=48.10 E-value=8.6 Score=42.09 Aligned_cols=55 Identities=20% Similarity=0.249 Sum_probs=34.3
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHH--HCCCcEEEEcCCCccHHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYL--ENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L--~~g~sVlV~ApTGSGKTlvae 433 (1379)
....|.++...+.....+.+.+..+. + + +.+..+ .....+++.+|+|+|||.++.
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~~~--~-----~---~~~~~~~~~~~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDFLK--Y-----P---ERYANLGAKIPKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHHHH--C-----H---HHHHHHSCCCCSCCCCBCSSCSSHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHH--C-----h---HHHHHCCCCCCceEEEECCCCCcHHHHHH
Confidence 34568888877777777776443221 1 1 112222 224569999999999998764
No 284
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=48.05 E-value=8.9 Score=43.97 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=14.1
Q ss_pred CcEEEEcCCCccHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlva 432 (1379)
.-++|++|||+|||.++
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 45788999999999763
No 285
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=47.97 E-value=9.9 Score=43.51 Aligned_cols=16 Identities=38% Similarity=0.688 Sum_probs=13.6
Q ss_pred cEEEEcCCCccHHHHH
Q 039491 417 SVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 417 sVlV~ApTGSGKTlva 432 (1379)
-++|++|||||||.++
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4788999999999763
No 286
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=47.97 E-value=9.7 Score=42.40 Aligned_cols=38 Identities=8% Similarity=-0.074 Sum_probs=28.8
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecc
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAP 451 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsP 451 (1379)
.|..++|.+.+|+|||+.+...+...+++|-+++|++=
T Consensus 20 ~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~ 57 (260)
T 3bs4_A 20 HSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSI 57 (260)
T ss_dssp TCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEE
Confidence 45678888788888886655566677788999999863
No 287
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=47.79 E-value=9.5 Score=46.52 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=22.6
Q ss_pred HHHHHHHHHCCCcEEEEcCCCccHHHHHH
Q 039491 405 QKEAIYYLENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 405 Q~eAI~~L~~g~sVlV~ApTGSGKTlvae 433 (1379)
=+.++..+..+.++++.+|+|+|||..+.
T Consensus 31 i~~l~~al~~~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 31 IRLCLLAALSGESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSSHHHHHH
T ss_pred HHHHHHHHhcCCeeEeecCchHHHHHHHH
Confidence 34455556778999999999999998653
No 288
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=47.76 E-value=13 Score=38.00 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=17.2
Q ss_pred CCCcEEEEcCCCccHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae 433 (1379)
.+..+++.++.|||||.++.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 46789999999999998754
No 289
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=47.50 E-value=25 Score=37.12 Aligned_cols=121 Identities=10% Similarity=-0.027 Sum_probs=69.1
Q ss_pred CCCHHHHHHHHHHH--CCCcEEEEcCCCccHHHHHHHHHHHHH-hcCCcEEEecchHHHHHHHHHHHhccccEEEEecCc
Q 039491 400 ELDNFQKEAIYYLE--NGDSVFVAAHTSAGKTVVAEYAFALAT-KHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDV 476 (1379)
Q Consensus 400 eL~~~Q~eAI~~L~--~g~sVlV~ApTGSGKTlvae~aI~~~l-~~~~raIylsPtkaLsnQk~~~~~~~f~VglltGdv 476 (1379)
+-++-|..|+..+. ...-.+|.++-|++||.-..-.++... ..|.++.+++|+..-.....+...-
T Consensus 34 ~~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~~~~~l----------- 102 (189)
T 2l8b_A 34 PRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMKQDERL----------- 102 (189)
T ss_dssp CCHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHSCTTTC-----------
T ss_pred ccCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHHhhcCc-----------
Confidence 34578999999984 445678899999999976333333333 5689999999996654443222111
Q ss_pred ccCCCCceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHH-cCccceEEEeccc
Q 039491 477 SLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIM-LPRHINIVLLSAT 545 (1379)
Q Consensus 477 ~in~~a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~-Lp~~vqiIlLSAT 545 (1379)
+..+ + |. ..+......+..=+++|+|||-.+.-.+ .-.++.. ...+.|+|++=-+
T Consensus 103 ----~~~t-~-t~----~~ll~~~~~~tp~s~lIVD~AekLS~kE----~~~Lld~A~~~naqvvll~~~ 158 (189)
T 2l8b_A 103 ----SGEL-I-TG----RRQLLEGMAFTPGSTVIVDQGEKLSLKE----TLTLLDGAARHNVQVLITDSG 158 (189)
T ss_dssp ----SSCS-S-ST----TTTTTTSCCCCCCCEEEEEESSSHHHHH----HHHHHHHHHHTTCCEEEEESS
T ss_pred ----Ccce-e-eh----hhhhcCCCCCCCCCEEEEechhhcCHHH----HHHHHHHHHhcCCEEEEeCCc
Confidence 1111 1 11 1111222223445689999999886321 2222211 1245788877443
No 290
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=47.25 E-value=48 Score=44.58 Aligned_cols=79 Identities=10% Similarity=0.013 Sum_probs=61.6
Q ss_pred CCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHHH
Q 039491 684 SLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIVK 763 (1379)
Q Consensus 684 ~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~R 763 (1379)
.+.+++|.|+++.-|.+.++.+.+.--. +...|+.+|+..+...+
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~-----------------------------------~~i~v~~l~~~~~~~~~ 695 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFAN-----------------------------------WPVRIEMISRFRSAKEQ 695 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTT-----------------------------------TTCCEEEESTTSCHHHH
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhc-----------------------------------CCCeEEEEeCCCCHHHH
Confidence 4568999999999888888777541100 11237889999999999
Q ss_pred HHHHHHhcCCCeeEEEec-ccccccCCCCCceEEE
Q 039491 764 EVIEMLFCRGVVKVLFST-ETFAMGVNAPARTVVF 797 (1379)
Q Consensus 764 e~Ve~lF~~G~ikVLVAT-etla~GINiPa~tvVI 797 (1379)
..+...+..|.++|+|+| ..+...+++....+||
T Consensus 696 ~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 696 TQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp HHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred HHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 999999999999999999 5666678888887765
No 291
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=47.19 E-value=51 Score=34.38 Aligned_cols=64 Identities=16% Similarity=0.044 Sum_probs=49.8
Q ss_pred cCCcEEEecchHHHHHHHHHHHhccc-cEEEEecCccc-----------CCCCceeeecHHHHHHHHhcCcccCCCccEE
Q 039491 442 HCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVSL-----------RPEASCLIMTTEILRSMLYRGADIIRDIEWV 509 (1379)
Q Consensus 442 ~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lV 509 (1379)
.+.++|+.++++.-+...+..|+... .+..++|+.+. +.+..|+|+|. .+.+|- .+.++++|
T Consensus 53 ~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~Gl-di~~v~~V 126 (191)
T 2p6n_A 53 TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VASKGL-DFPAIQHV 126 (191)
T ss_dssp SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHHTTC-CCCCCSEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chhcCC-CcccCCEE
Confidence 45689999999999999999998766 89999998762 23578999983 344553 46788888
Q ss_pred EE
Q 039491 510 IF 511 (1379)
Q Consensus 510 I~ 511 (1379)
|.
T Consensus 127 I~ 128 (191)
T 2p6n_A 127 IN 128 (191)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 292
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=47.07 E-value=43 Score=44.83 Aligned_cols=79 Identities=11% Similarity=0.066 Sum_probs=60.1
Q ss_pred CCCCCEEEEeCChhHHHHHHHHhhcCCCCCchhhhHHHHHHHHHhhhccCCCCCchhHHHHHHhhccceEEecCCCChHH
Q 039491 683 KSLLPVVIFCFSKNHCDKLADGMSGIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIAIHHAGLLPIV 762 (1379)
Q Consensus 683 ~~~~pvIVFv~Srk~ce~lA~~L~~~~l~~~~ek~~i~~~~~~~~~~L~~edr~lpqi~~l~~lL~rGIavhHggL~~~~ 762 (1379)
..+..+||.++++.-|.+.+..+..++ .. .-.++..|||++..+
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~-~~-----------------------------------~i~v~~l~Gg~~~~e 162 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLA-DE-----------------------------------KVKIFGFYSSMKKEE 162 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTS-CT-----------------------------------TSCEEEECTTCCTTH
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhh-CC-----------------------------------CCeEEEEeCCCCHHH
Confidence 445789999999999999999998744 11 113788999999999
Q ss_pred HHHHHHHhcCCCeeEEEeccccc-c---cCCCCCceEEE
Q 039491 763 KEVIEMLFCRGVVKVLFSTETFA-M---GVNAPARTVVF 797 (1379)
Q Consensus 763 Re~Ve~lF~~G~ikVLVATetla-~---GINiPa~tvVI 797 (1379)
|......+.+|..+|||+|.-.- . -+++..+.+||
T Consensus 163 r~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lV 201 (1104)
T 4ddu_A 163 KEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVF 201 (1104)
T ss_dssp HHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEE
T ss_pred HHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEE
Confidence 88889999999999999996321 1 14455666654
No 293
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=46.97 E-value=12 Score=39.74 Aligned_cols=19 Identities=5% Similarity=0.309 Sum_probs=16.6
Q ss_pred CCCcEEEEcCCCccHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlva 432 (1379)
.|+-+++++|+|+|||.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5788999999999999863
No 294
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=46.69 E-value=11 Score=40.60 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=17.8
Q ss_pred HHHCCCcEEEEcCCCccHHHHHH
Q 039491 411 YLENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 411 ~L~~g~sVlV~ApTGSGKTlvae 433 (1379)
++..|+-+.+++|.|||||...-
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk 34 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQ 34 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHH
Confidence 46778899999999999998643
No 295
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=46.31 E-value=12 Score=40.15 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=17.5
Q ss_pred HHCCCcEEEEcCCCccHHHHHH
Q 039491 412 LENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae 433 (1379)
+..|+-+.+++|+|||||...-
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~ 41 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIK 41 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999998643
No 296
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=45.75 E-value=7.7 Score=44.68 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=23.0
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA 450 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls 450 (1379)
.|..+++.+|+|+|||..+...+.. .+.+++|+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs 155 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYAT 155 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEE
Confidence 3567899999999999875543332 445555554
No 297
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=45.63 E-value=12 Score=42.52 Aligned_cols=36 Identities=8% Similarity=0.069 Sum_probs=24.5
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecc
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAP 451 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsP 451 (1379)
..|+.+.+.+|+|||||..+-. |+..+ ..+++..+|
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~l-L~gl~--~G~I~~~v~ 159 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNS-LIHFL--GGSVLSFAN 159 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHH-HHHHH--TCEEECGGG
T ss_pred cCCCEEEEECCCCCcHHHHHHH-Hhhhc--CceEEEEec
Confidence 5788999999999999986433 33333 455554443
No 298
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=45.47 E-value=13 Score=37.33 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=15.1
Q ss_pred cEEEEcCCCccHHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~ 434 (1379)
.+++.++.|||||.++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999997643
No 299
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=45.13 E-value=12 Score=38.72 Aligned_cols=18 Identities=11% Similarity=0.403 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCccHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlva 432 (1379)
++-+.+.+|+|||||.+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCCEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 345789999999999864
No 300
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=44.85 E-value=19 Score=39.48 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=25.7
Q ss_pred CcEEEEc-CCCccHHHHHHHHHHHHHhcCCcEEEecc
Q 039491 416 DSVFVAA-HTSAGKTVVAEYAFALATKHCTRAVYTAP 451 (1379)
Q Consensus 416 ~sVlV~A-pTGSGKTlvae~aI~~~l~~~~raIylsP 451 (1379)
+.++|++ .||+|||++....+....++|.++.|.=|
T Consensus 22 k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKP 58 (242)
T 3qxc_A 22 HMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKP 58 (242)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEee
Confidence 4677776 59999999875555555567888888644
No 301
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=44.85 E-value=12 Score=43.42 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=14.1
Q ss_pred cEEEEcCCCccHHHHH
Q 039491 417 SVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 417 sVlV~ApTGSGKTlva 432 (1379)
.++|++|||||||.++
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5789999999999864
No 302
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=44.74 E-value=15 Score=41.26 Aligned_cols=32 Identities=9% Similarity=-0.013 Sum_probs=21.7
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA 450 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls 450 (1379)
..+++.+|+|+|||..+. +++..+ +...+++.
T Consensus 37 ~~lLl~GppGtGKT~la~-aiA~~l--~~~~i~v~ 68 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE-LVFRKM--GINPIMMS 68 (293)
T ss_dssp SEEEEEECTTSCHHHHHH-HHHHHH--TCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHH-HHHHHh--CCCEEEEe
Confidence 468999999999998764 344433 44455544
No 303
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=44.70 E-value=14 Score=37.61 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=16.8
Q ss_pred CCcEEEEcCCCccHHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~ 434 (1379)
+..+++.++.|||||.++..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~ 22 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQL 22 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 56789999999999997643
No 304
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=44.58 E-value=10 Score=40.71 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCccHHHH
Q 039491 415 GDSVFVAAHTSAGKTVV 431 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlv 431 (1379)
|.-+++++|||+|||..
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 56689999999999975
No 305
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=44.19 E-value=20 Score=39.42 Aligned_cols=36 Identities=8% Similarity=0.100 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA 450 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls 450 (1379)
+..++++|+.|||||.++..........+..++++.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 346899999999999976543322222455555443
No 306
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=44.08 E-value=23 Score=42.21 Aligned_cols=73 Identities=16% Similarity=0.195 Sum_probs=43.4
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEE
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVY 448 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIy 448 (1379)
....|.+++..+.....+.+.+-.+. .+|.- |+. .....+.+++.+|+|+|||.++- +++..+ .+...++
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~-~~~~~---~~~----~~~~~~~vLL~GppGtGKT~lA~-aia~~~-~~~~~~~ 198 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPI-KFPHL---FTG----KRTPWRGILLFGPPGTGKSYLAK-AVATEA-NNSTFFS 198 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHH-HCTTT---TSG----GGCCCSEEEEECSTTSSHHHHHH-HHHHHC-CSSEEEE
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHh-hCHHH---hhc----cCCCCceEEEECCCCCCHHHHHH-HHHHHc-CCCCEEE
Confidence 45689999998888888877553221 12211 110 11234689999999999998753 344333 2333444
Q ss_pred ecc
Q 039491 449 TAP 451 (1379)
Q Consensus 449 lsP 451 (1379)
+..
T Consensus 199 v~~ 201 (444)
T 2zan_A 199 ISS 201 (444)
T ss_dssp ECC
T ss_pred EeH
Confidence 433
No 307
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=43.96 E-value=27 Score=35.64 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=49.2
Q ss_pred cCCcEEEecchHHHHHHHHHHHhccc-cEEEEecCccc-----------CCCCceeeecHHHHHHHHhcCcccCCCccEE
Q 039491 442 HCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVSL-----------RPEASCLIMTTEILRSMLYRGADIIRDIEWV 509 (1379)
Q Consensus 442 ~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lV 509 (1379)
.+.++|+.++++.-+...+..+.+.. .+..++|+.+. +....|+|+|. .+.+| ..+.++++|
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~G-id~~~~~~V 106 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCARG-IDVKQVTIV 106 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCCTT-TCCTTEEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chhcC-CCcccCCEE
Confidence 35689999999999999999998876 89999998762 34568888882 33344 346678888
Q ss_pred EE
Q 039491 510 IF 511 (1379)
Q Consensus 510 I~ 511 (1379)
|.
T Consensus 107 i~ 108 (175)
T 2rb4_A 107 VN 108 (175)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 308
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=43.64 E-value=32 Score=37.90 Aligned_cols=55 Identities=18% Similarity=0.194 Sum_probs=34.9
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHH--HCCCcEEEEcCCCccHHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYL--ENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L--~~g~sVlV~ApTGSGKTlvae 433 (1379)
....|.+++..+.....+.++...+.. ..++..+ .-.+.+++.+|+|+|||..+-
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~----------~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKN----------PSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHC----------HHHHHHTTCCCCCEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHC----------HHHHHHcCCCCCCeEEEECCCcChHHHHHH
Confidence 456788888888877777765432210 1222222 112459999999999998753
No 309
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=43.50 E-value=22 Score=36.38 Aligned_cols=32 Identities=13% Similarity=0.084 Sum_probs=20.4
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHhcCCcEEE
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATKHCTRAVY 448 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~~~~raIy 448 (1379)
.+++.++.|||||+++.......-..+..++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~ 33 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSL 33 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 37899999999999865443322223444444
No 310
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=43.49 E-value=24 Score=36.85 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=22.9
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEE
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVY 448 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIy 448 (1379)
++..+++.++.|||||.++.......-..+..+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~ 42 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL 42 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 46679999999999999875443332223444433
No 311
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=43.34 E-value=16 Score=38.22 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=17.4
Q ss_pred HCCCcEEEEcCCCccHHHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae 433 (1379)
..|..+++.++.|||||.++-
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 357889999999999998754
No 312
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=42.98 E-value=14 Score=38.95 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=17.3
Q ss_pred HHHCCCcEEEEcCCCccHHHHH
Q 039491 411 YLENGDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 411 ~L~~g~sVlV~ApTGSGKTlva 432 (1379)
.+..|+-+.+.+|+|||||..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 5778999999999999999864
No 313
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=42.97 E-value=53 Score=34.75 Aligned_cols=65 Identities=22% Similarity=0.204 Sum_probs=50.4
Q ss_pred hcCCcEEEecchHHHHHHHHHHHhccc-cEEEEecCccc-----------CCCCceeeecHHHHHHHHhcCcccCCCccE
Q 039491 441 KHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVSL-----------RPEASCLIMTTEILRSMLYRGADIIRDIEW 508 (1379)
Q Consensus 441 ~~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l~~v~l 508 (1379)
..+.++|+.++++.-+...++.+.+.. .+..++|+.+. +...+|+|+| +++.+| ..+.++++
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~G-idi~~v~~ 102 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVAARG-LDIPQVDL 102 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTTTCS-SSCCCBSE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----ChhhcC-CCCccCcE
Confidence 346799999999999999999998776 89999998762 3457899998 344444 34677888
Q ss_pred EEE
Q 039491 509 VIF 511 (1379)
Q Consensus 509 VI~ 511 (1379)
||.
T Consensus 103 Vi~ 105 (212)
T 3eaq_A 103 VVH 105 (212)
T ss_dssp EEE
T ss_pred EEE
Confidence 873
No 314
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=42.94 E-value=10 Score=38.36 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=14.5
Q ss_pred cEEEEcCCCccHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae 433 (1379)
.++++++.|||||.++.
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 47899999999998753
No 315
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=42.62 E-value=14 Score=38.90 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=27.2
Q ss_pred CceeeecHHHHHHHHhcCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCc
Q 039491 482 ASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPR 535 (1379)
Q Consensus 482 a~IlV~TpEiL~smL~~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~ 535 (1379)
.+-...|.+.+..|+..+. ++-.-|+| +..+|...+.+-..+..
T Consensus 48 ~dY~Fvs~~eF~~~i~~g~-------flE~~~~~---g~~YGt~~~~v~~~l~~ 91 (186)
T 1ex7_A 48 KDYNFVSVDEFKSMIKNNE-------FIEWAQFS---GNYYGSTVASVKQVSKS 91 (186)
T ss_dssp TTBEECCHHHHHHHHHTTC-------EEEEEEET---TEEEEEEHHHHHHHHHH
T ss_pred ceeEeecHHHHHHHHHcCC-------EEEEEEEc---CceeeeecceeeehhhC
Confidence 4567889999999987764 34444555 33456665555554443
No 316
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=42.22 E-value=14 Score=37.46 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=17.1
Q ss_pred CCCcEEEEcCCCccHHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~ 434 (1379)
.|..+++.++.|||||.++-.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 356789999999999987543
No 317
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=41.91 E-value=15 Score=42.40 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=26.0
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHh---c---CCcEEEecc
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATK---H---CTRAVYTAP 451 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~---~---~~raIylsP 451 (1379)
.|.-+.+.+|.|||||..+...+..... . +.+++|+.-
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 4677899999999999876555444321 1 357777753
No 318
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=41.62 E-value=14 Score=43.75 Aligned_cols=16 Identities=25% Similarity=0.493 Sum_probs=13.6
Q ss_pred cEEEEcCCCccHHHHH
Q 039491 417 SVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 417 sVlV~ApTGSGKTlva 432 (1379)
-++|+||||+|||.++
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 4789999999999764
No 319
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=41.36 E-value=16 Score=41.27 Aligned_cols=93 Identities=10% Similarity=0.043 Sum_probs=49.0
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec--chHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHH-
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA--PIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEI- 491 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls--PtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEi- 491 (1379)
+..+.+++++|+|||..+..........+.+++++. +.++.+..+.+.+.+..++-++.+... ..|..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~---------~~p~~~ 168 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGE---------KDVVGI 168 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTC---------CCHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCC---------CCHHHH
Confidence 556788999999999765443333334566666653 233333333333333223444443211 12332
Q ss_pred HHHHHhcCcccCCCccEEEEeccCCCC
Q 039491 492 LRSMLYRGADIIRDIEWVIFDEVHYVN 518 (1379)
Q Consensus 492 L~smL~~~~~~l~~v~lVI~DEaH~l~ 518 (1379)
+...+..- .-.+.++||+|=+-.+.
T Consensus 169 ~~~~l~~~--~~~~~D~ViIDTpg~~~ 193 (297)
T 1j8m_F 169 AKRGVEKF--LSEKMEIIIVDTAGRHG 193 (297)
T ss_dssp HHHHHHHH--HHTTCSEEEEECCCSCC
T ss_pred HHHHHHHH--HhCCCCEEEEeCCCCcc
Confidence 22333211 01467899999987654
No 320
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=40.91 E-value=19 Score=37.05 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=18.1
Q ss_pred HCCCcEEEEcCCCccHHHHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~ 434 (1379)
.++..+++.++.|||||.++..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~ 28 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEK 28 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 4567899999999999997643
No 321
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=40.88 E-value=22 Score=37.48 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=16.1
Q ss_pred CCCcEEEEcCCCccHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlva 432 (1379)
.|.-+.|.+|+|||||+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4667889999999999864
No 322
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=40.86 E-value=18 Score=48.76 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=34.9
Q ss_pred EEEEcCCCccHHHHHHHHHHHHHhc---CCcEEEecchHHHHHHHHHHHhcc
Q 039491 418 VFVAAHTSAGKTVVAEYAFALATKH---CTRAVYTAPIKTISNQKYRDFSGK 466 (1379)
Q Consensus 418 VlV~ApTGSGKTlvae~aI~~~l~~---~~raIylsPtkaLsnQk~~~~~~~ 466 (1379)
-||.|..|||||.+...-|+..+.. +.+++++||...-- +..+++...
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TF-t~~~rl~~~ 54 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTF-LMEYELAKT 54 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHH-HHHHHHTCC
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccH-HHHHHHHHh
Confidence 3789999999999988888777754 47899999976432 244445443
No 323
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=40.64 E-value=14 Score=37.78 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=17.3
Q ss_pred CCCcEEEEcCCCccHHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~ 434 (1379)
.|..+++.++.|||||+++..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 456789999999999997644
No 324
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=40.58 E-value=11 Score=39.71 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=24.2
Q ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecchHHH
Q 039491 418 VFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTI 455 (1379)
Q Consensus 418 VlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPtkaL 455 (1379)
++|.+++|||||..|+- .+.. +.+++|++.-.+.
T Consensus 2 ilV~Gg~~SGKS~~A~~---la~~-~~~~~yiaT~~~~ 35 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEA---LIGD-APQVLYIATSQIL 35 (180)
T ss_dssp EEEEECTTSSHHHHHHH---HHCS-CSSEEEEECCCC-
T ss_pred EEEECCCCCcHHHHHHH---HHhc-CCCeEEEecCCCC
Confidence 68999999999986543 2333 6678998875443
No 325
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=40.53 E-value=27 Score=36.28 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=18.0
Q ss_pred CCCcEEEEcCCCccHHHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~a 435 (1379)
++..+++.++.|||||.++...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L 30 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLL 30 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHH
Confidence 4567899999999999986543
No 326
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=40.42 E-value=11 Score=38.48 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=17.3
Q ss_pred HCCCcEEEEcCCCccHHHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae 433 (1379)
..|+-+.+.+|.|||||..+-
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 357778999999999998643
No 327
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=40.15 E-value=22 Score=36.87 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=17.1
Q ss_pred CCcEEEEcCCCccHHHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~a 435 (1379)
+.-+++.++.|||||.++...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L 24 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLL 24 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 556889999999999986543
No 328
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=39.21 E-value=19 Score=37.10 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=17.8
Q ss_pred HCCCcEEEEcCCCccHHHHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~ 434 (1379)
..+..+++.++.|||||.++-.
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~ 31 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEK 31 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 3466799999999999987643
No 329
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=39.06 E-value=28 Score=36.11 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=14.9
Q ss_pred CcEEEEcCCCccHHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~ 434 (1379)
.-+.++++.|||||.....
T Consensus 7 ~~i~i~G~sGsGKTTl~~~ 25 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKK 25 (174)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHH
Confidence 3578999999999986433
No 330
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=39.01 E-value=28 Score=36.63 Aligned_cols=34 Identities=29% Similarity=0.284 Sum_probs=22.9
Q ss_pred EEEEc-CCCccHHHHHHHHHHHHHhcCCcEEEecc
Q 039491 418 VFVAA-HTSAGKTVVAEYAFALATKHCTRAVYTAP 451 (1379)
Q Consensus 418 VlV~A-pTGSGKTlvae~aI~~~l~~~~raIylsP 451 (1379)
++|++ .+|.|||+++.-......+.|.|++++=|
T Consensus 4 I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 44444 58999998865444444467889998644
No 331
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=38.95 E-value=22 Score=51.62 Aligned_cols=38 Identities=13% Similarity=0.236 Sum_probs=26.2
Q ss_pred CCCCCCHHHHH-HH---HHHHCCCcEEEEcCCCccHHHHHHH
Q 039491 397 FPFELDNFQKE-AI---YYLENGDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 397 ~pFeL~~~Q~e-AI---~~L~~g~sVlV~ApTGSGKTlvae~ 434 (1379)
.++.+.+.+.. ++ ..+..+..|+++||||||||.+.-.
T Consensus 901 ~~l~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 901 SGFSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HTCCCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred cCCcccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 45666665533 22 2245567899999999999998654
No 332
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=38.85 E-value=18 Score=37.07 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCccHHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~ 434 (1379)
+..++++++.|||||.++..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~ 24 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQA 24 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45689999999999997643
No 333
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=38.77 E-value=12 Score=39.14 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=15.3
Q ss_pred cEEEEcCCCccHHHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~a 435 (1379)
-+++.++.|||||+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L 20 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKL 20 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 3688999999999876543
No 334
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=38.54 E-value=54 Score=37.77 Aligned_cols=70 Identities=19% Similarity=0.099 Sum_probs=53.3
Q ss_pred HHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEEEecCccc-----------CCCCceeeecHHHHHHHHhcCcccC
Q 039491 436 FALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVSL-----------RPEASCLIMTTEILRSMLYRGADII 503 (1379)
Q Consensus 436 I~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l 503 (1379)
++.....+.++|+.++++.-+...++.+.+.. .+..++|+.+. +.+..|+|+|. .+.+|- .+
T Consensus 269 ~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~Gi-di 342 (417)
T 2i4i_A 269 LLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAARGL-DI 342 (417)
T ss_dssp HHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHTTS-CC
T ss_pred HHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhcCC-Cc
Confidence 33333457889999999999999999998876 89999998762 24568999995 444553 46
Q ss_pred CCccEEEE
Q 039491 504 RDIEWVIF 511 (1379)
Q Consensus 504 ~~v~lVI~ 511 (1379)
.++++||.
T Consensus 343 p~v~~Vi~ 350 (417)
T 2i4i_A 343 SNVKHVIN 350 (417)
T ss_dssp CCEEEEEE
T ss_pred ccCCEEEE
Confidence 78888885
No 335
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=38.21 E-value=13 Score=39.85 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=14.1
Q ss_pred HHCCCcEEEEcCCCccHHHHHH
Q 039491 412 LENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae 433 (1379)
+..|+-+.+.+|+|||||.++-
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~ 45 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVAN 45 (231)
T ss_dssp EECCCEEEEECSCC----CHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHH
Confidence 3567888999999999998743
No 336
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=37.79 E-value=17 Score=40.86 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=14.8
Q ss_pred CcEEEEcCCCccHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae 433 (1379)
.-+.|++++|||||+.+-
T Consensus 32 ~ii~I~G~sGsGKSTla~ 49 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSI 49 (290)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357789999999998754
No 337
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=37.74 E-value=20 Score=41.72 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=14.7
Q ss_pred cEEEEcCCCccHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae 433 (1379)
-+++++|||||||.+++
T Consensus 25 ~~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 56799999999998874
No 338
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=37.64 E-value=11 Score=38.81 Aligned_cols=20 Identities=10% Similarity=0.212 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCccHHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~ 434 (1379)
|.-+++.+|.|||||+++-.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~ 21 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKR 21 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 34578999999999987543
No 339
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=37.52 E-value=21 Score=35.89 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=16.4
Q ss_pred CcEEEEcCCCccHHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~ 434 (1379)
+++++.++.|||||.++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5799999999999998653
No 340
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=37.51 E-value=20 Score=41.55 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCccHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae 433 (1379)
..++++.+|+|+|||.++.
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4689999999999998764
No 341
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=37.03 E-value=24 Score=38.79 Aligned_cols=20 Identities=35% Similarity=0.640 Sum_probs=17.9
Q ss_pred CCCcEEEEcCCCccHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae 433 (1379)
.|+.+++.++.|||||.++-
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 48999999999999999754
No 342
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=36.96 E-value=20 Score=37.27 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=15.6
Q ss_pred CcEEEEcCCCccHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae 433 (1379)
..++++|+.|||||.++-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 469999999999999754
No 343
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=36.89 E-value=29 Score=41.71 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=19.6
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALAT 440 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l 440 (1379)
...++++.+|+|+|||.++.. ++..+
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~-la~~l 225 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEG-LAQQI 225 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHH-HHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHH-HHHHH
Confidence 346899999999999998753 44443
No 344
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=36.70 E-value=21 Score=37.58 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=15.7
Q ss_pred cEEEEcCCCccHHHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~a 435 (1379)
.+++.++.|||||+++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999986543
No 345
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=36.66 E-value=23 Score=36.01 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=15.0
Q ss_pred cEEEEcCCCccHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae 433 (1379)
.+++.++.|||||.++.
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 68999999999998764
No 346
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=36.59 E-value=17 Score=38.01 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=16.7
Q ss_pred HCCCcEEEEcCCCccHHHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae 433 (1379)
..+..+.+++++|||||+++.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 345678899999999998653
No 347
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=36.42 E-value=20 Score=36.61 Aligned_cols=20 Identities=30% Similarity=0.233 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCccHHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~ 434 (1379)
+..+++.+++|||||.++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 44688999999999997643
No 348
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=36.36 E-value=24 Score=36.03 Aligned_cols=19 Identities=11% Similarity=0.268 Sum_probs=15.9
Q ss_pred CcEEEEcCCCccHHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~ 434 (1379)
..++++++.|||||.++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp CSEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4689999999999997643
No 349
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=35.65 E-value=21 Score=43.64 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=19.5
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFA 437 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~ 437 (1379)
.++.+++|++.||||||++.-..+.
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHH
Confidence 4467999999999999987544443
No 350
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=35.38 E-value=19 Score=37.79 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=16.4
Q ss_pred CCCcEEEEcCCCccHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae 433 (1379)
.|.-+.+.+|+|||||+++-
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~ 24 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQ 24 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHH
Confidence 45668899999999998753
No 351
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=35.30 E-value=20 Score=38.57 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHCC----CcEEEEcCCCccHHHHHHHHHHHHH
Q 039491 401 LDNFQKEAIYYLENG----DSVFVAAHTSAGKTVVAEYAFALAT 440 (1379)
Q Consensus 401 L~~~Q~eAI~~L~~g----~sVlV~ApTGSGKTlvae~aI~~~l 440 (1379)
+-.| ..++..+.++ ..+++.+|.|+|||..| .+++..+
T Consensus 41 ~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 41 FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 3444 4444444433 35999999999999865 4555544
No 352
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=35.23 E-value=22 Score=36.81 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=17.5
Q ss_pred CCCcEEEEcCCCccHHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~ 434 (1379)
+|..+++.++.|||||+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~ 23 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMN 23 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 466789999999999998653
No 353
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=35.07 E-value=69 Score=40.28 Aligned_cols=86 Identities=10% Similarity=0.051 Sum_probs=61.2
Q ss_pred ccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEEEecCcc-----------cCCCCceeeecHHHHH
Q 039491 426 AGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVS-----------LRPEASCLIMTTEILR 493 (1379)
Q Consensus 426 SGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~-----------in~~a~IlV~TpEiL~ 493 (1379)
.|+.-...-.+......+.++|+.++++.-+......|.+.. .+..++|+.+ .+...+|+|+|.
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~---- 497 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN---- 497 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC----
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC----
Confidence 354433223344455678899999999999999999998876 8888999864 234578899883
Q ss_pred HHHhcCcccCCCccEEEEeccCCC
Q 039491 494 SMLYRGADIIRDIEWVIFDEVHYV 517 (1379)
Q Consensus 494 smL~~~~~~l~~v~lVI~DEaH~l 517 (1379)
.+.+| ..+.++++||+=+++..
T Consensus 498 -~l~~G-lDip~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 498 -LLREG-LDIPEVSLVAILDADKE 519 (664)
T ss_dssp -CCCTT-CCCTTEEEEEETTTTSC
T ss_pred -hhhcC-ccCCCCCEEEEeCCccc
Confidence 34445 34678899888776543
No 354
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=35.03 E-value=22 Score=37.47 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=15.3
Q ss_pred cEEEEcCCCccHHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~ 434 (1379)
.+++.++.|||||+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999998654
No 355
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=34.92 E-value=31 Score=42.58 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=26.3
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA 450 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls 450 (1379)
.+-+++++..|.|||+++.-......+.|.|++++.
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd 43 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS 43 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 356788999999999886544444446688888854
No 356
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=34.52 E-value=25 Score=37.13 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCccHHHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~a 435 (1379)
+..+.+.+++|||||+++-+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAM 25 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 356889999999999876443
No 357
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=34.41 E-value=26 Score=35.19 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=15.8
Q ss_pred CcEEEEcCCCccHHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~ 434 (1379)
..+++.++.|||||.++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRE 21 (173)
T ss_dssp CCEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3589999999999987643
No 358
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=34.37 E-value=24 Score=35.92 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.2
Q ss_pred cEEEEcCCCccHHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~ 434 (1379)
.+++.++.|||||.++..
T Consensus 8 ~I~l~G~~GsGKsT~~~~ 25 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCAN 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 588999999999997643
No 359
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=34.33 E-value=26 Score=37.00 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCccHHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~ 434 (1379)
+..+++.++.|||||+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~ 23 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPN 23 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 56789999999999997643
No 360
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=34.30 E-value=24 Score=37.57 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=16.2
Q ss_pred CCCcEEEEcCCCccHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae 433 (1379)
.+..+++.+++|||||.++.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHH
Confidence 34679999999999998754
No 361
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=34.08 E-value=33 Score=39.02 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=23.1
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA 450 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls 450 (1379)
-+++.+..|.|||.++.-......+.|.|++++.
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 4567889999999876433333335577777764
No 362
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=34.00 E-value=28 Score=36.22 Aligned_cols=20 Identities=25% Similarity=0.157 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCccHHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~ 434 (1379)
+..+++.++.|||||.++..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~ 39 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVK 39 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34689999999999997643
No 363
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=33.97 E-value=15 Score=28.55 Aligned_cols=34 Identities=3% Similarity=-0.107 Sum_probs=29.3
Q ss_pred HHHHHHHhCCCCHHHHHhhcCCCCCceehhhhhH
Q 039491 1301 VEVVYEWAKGTPFADICELTDVPEGLIVRTIVRL 1334 (1379)
Q Consensus 1301 ~~vvyeWA~G~sF~~I~~~Tdv~EG~IVR~i~RL 1334 (1379)
..++..|..|+|..+|.+...+...+|-|.+++.
T Consensus 12 ~~i~~~~~~g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 12 AQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 3577778999999999999999999998888764
No 364
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=33.84 E-value=32 Score=39.24 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=23.3
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEe
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 449 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyl 449 (1379)
-+++.+..|.|||.++.-......+.|.|++++
T Consensus 21 i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllv 53 (329)
T 2woo_A 21 WIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLI 53 (329)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEE
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 456788999999987654333333568888876
No 365
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=33.74 E-value=15 Score=41.22 Aligned_cols=19 Identities=16% Similarity=0.351 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCccHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae 433 (1379)
+.-++++||.|||||.++-
T Consensus 33 ~~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp CEEEEEECCTTSCTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3458899999999998753
No 366
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=33.72 E-value=35 Score=36.94 Aligned_cols=31 Identities=10% Similarity=0.058 Sum_probs=21.2
Q ss_pred EEEcCCCccHHHHHHHHHHHHHhcCCcEEEe
Q 039491 419 FVAAHTSAGKTVVAEYAFALATKHCTRAVYT 449 (1379)
Q Consensus 419 lV~ApTGSGKTlvae~aI~~~l~~~~raIyl 449 (1379)
++.+..|.|||.++.-......+.+.+++++
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLGHDVTIV 37 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 4567889999987654433333567788876
No 367
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=33.50 E-value=28 Score=36.89 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCccHHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~ 434 (1379)
...+++.++.|||||.++..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45789999999999997643
No 368
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=33.25 E-value=31 Score=36.59 Aligned_cols=31 Identities=16% Similarity=0.167 Sum_probs=20.6
Q ss_pred EEEcCCCccHHHHHHHHHHHHHhcCCcEEEe
Q 039491 419 FVAAHTSAGKTVVAEYAFALATKHCTRAVYT 449 (1379)
Q Consensus 419 lV~ApTGSGKTlvae~aI~~~l~~~~raIyl 449 (1379)
+..+..|.|||.++........+.+.+++++
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRGRKVLAV 37 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3456789999987654433333567788876
No 369
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=33.22 E-value=25 Score=40.01 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=24.4
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEecch
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPI 452 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~~~~raIylsPt 452 (1379)
-+++.++.|||||+.. -.+....++.++.++.|.
T Consensus 6 v~~i~G~~GaGKTTll--~~l~~~~~~~~~aVi~~d 39 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLL--RHILNEQHGYKIAVIENE 39 (318)
T ss_dssp EEEEEESSSSSCHHHH--HHHHHSCCCCCEEEECSS
T ss_pred EEEEEecCCCCHHHHH--HHHHhhcCCCcEEEEEec
Confidence 4789999999999853 222333467788888884
No 370
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=33.09 E-value=37 Score=36.33 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=24.3
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEe
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 449 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyl 449 (1379)
+|.-+++.++.|||||..+.......-..+..++.+
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 466788999999999998655443333445555544
No 371
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=32.28 E-value=26 Score=35.70 Aligned_cols=17 Identities=12% Similarity=0.300 Sum_probs=14.5
Q ss_pred cEEEEcCCCccHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae 433 (1379)
-.++++|+|||||.+..
T Consensus 28 ~~~i~G~NGsGKStll~ 44 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGD 44 (182)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred cEEEECCCCCCHHHHHH
Confidence 57899999999998754
No 372
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=32.24 E-value=3.9 Score=37.52 Aligned_cols=45 Identities=18% Similarity=0.130 Sum_probs=35.6
Q ss_pred HHHHHHHhCCCCHHHHHhhcCCCCCceehhhhhHHHHHHHHHHhh
Q 039491 1301 VEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAA 1345 (1379)
Q Consensus 1301 ~~vvyeWA~G~sF~~I~~~Tdv~EG~IVR~i~RLdEl~rqv~~Aa 1345 (1379)
.++|..+..|.|..+|+....|...+|-|++++..+.-...+..+
T Consensus 29 ~~~v~~~~~g~s~~~iA~~~gIs~sTl~rW~k~~~~~~~~~~~~~ 73 (87)
T 2elh_A 29 IHAIQRIHDGESKASVARDIGVPESTLRGWCKNEDKLRFMSRQSA 73 (87)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHHHhccccccCCC
Confidence 356767778999999999999999999999988776555554433
No 373
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=32.12 E-value=29 Score=35.83 Aligned_cols=111 Identities=12% Similarity=0.140 Sum_probs=57.1
Q ss_pred EEcCCCccHHHHHHHHHHHHHhcCCcEEEec--chHHHHHHHHHHHhccccEEEEecCcccCCCCceeeecHHHHHHHHh
Q 039491 420 VAAHTSAGKTVVAEYAFALATKHCTRAVYTA--PIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLY 497 (1379)
Q Consensus 420 V~ApTGSGKTlvae~aI~~~l~~~~raIyls--PtkaLsnQk~~~~~~~f~VglltGdv~in~~a~IlV~TpEiL~smL~ 497 (1379)
.....|+|||.++..........|.+++++= |...+.. +...- ....+++-+.++.+...+.
T Consensus 7 ~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~l~ 70 (206)
T 4dzz_A 7 LNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTN-----WSKAG-----------KAAFDVFTAASEKDVYGIR 70 (206)
T ss_dssp CCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH-----HHTTS-----------CCSSEEEECCSHHHHHTHH
T ss_pred EeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHH-----HHhcC-----------CCCCcEEecCcHHHHHHHH
Confidence 3467889999886544444445777888774 2222221 11100 0113344444466665554
Q ss_pred cCcccCCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEecccCCChHHHHHHHh
Q 039491 498 RGADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIG 557 (1379)
Q Consensus 498 ~~~~~l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlLSATvpN~~efa~wl~ 557 (1379)
. .-+++++||+|=.-.+. .....++... +.-++-+.++... ......+.
T Consensus 71 ~---l~~~yD~viiD~~~~~~-----~~~~~~l~~a--d~viiv~~~~~~~-~~~~~~~~ 119 (206)
T 4dzz_A 71 K---DLADYDFAIVDGAGSLS-----VITSAAVMVS--DLVIIPVTPSPLD-FSAAGSVV 119 (206)
T ss_dssp H---HTTTSSEEEEECCSSSS-----HHHHHHHHHC--SEEEEEECSCTTT-HHHHHHHH
T ss_pred H---hcCCCCEEEEECCCCCC-----HHHHHHHHHC--CEEEEEecCCHHH-HHHHHHHH
Confidence 3 23468999999765442 2223333332 3445556666655 44444433
No 374
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=32.08 E-value=36 Score=41.42 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=26.4
Q ss_pred HCCCcEEEEcCCCccHHHHHHHH-HHHHHhcCCcEEEec
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYA-FALATKHCTRAVYTA 450 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~a-I~~~l~~~~raIyls 450 (1379)
..|+.+.+.+|+|||||+.+-.. +.-.+..+...+|+.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~ 75 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT 75 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 46889999999999999876543 233344355566664
No 375
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=31.78 E-value=96 Score=38.96 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=58.8
Q ss_pred HHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEEEecCcc-----------cCCCCceeeecHHHHHHHHhcCcccC
Q 039491 436 FALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVS-----------LRPEASCLIMTTEILRSMLYRGADII 503 (1379)
Q Consensus 436 I~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~-----------in~~a~IlV~TpEiL~smL~~~~~~l 503 (1379)
+...+..+.++|+.++++.-+......|.+.. .+..++|+.+ .+....|+|+|. .+.+| ..+
T Consensus 438 l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~~G-lDi 511 (661)
T 2d7d_A 438 IQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLREG-LDI 511 (661)
T ss_dssp HHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCSTT-CCC
T ss_pred HHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhhCC-ccc
Confidence 44455678899999999999999999998876 8888999864 124578999984 44455 456
Q ss_pred CCccEEEEeccCCC
Q 039491 504 RDIEWVIFDEVHYV 517 (1379)
Q Consensus 504 ~~v~lVI~DEaH~l 517 (1379)
.++++||+=+++..
T Consensus 512 p~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 512 PEVSLVAILDADKE 525 (661)
T ss_dssp TTEEEEEETTTTCC
T ss_pred CCCCEEEEeCcccc
Confidence 78999999888754
No 376
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=31.49 E-value=22 Score=36.73 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=15.2
Q ss_pred cEEEEcCCCccHHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~ 434 (1379)
.+.+++++|||||.++..
T Consensus 10 ~I~i~G~~GsGKST~~~~ 27 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAAL 27 (203)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999997643
No 377
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=31.48 E-value=38 Score=39.06 Aligned_cols=34 Identities=18% Similarity=0.065 Sum_probs=23.0
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA 450 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls 450 (1379)
.+.+++++|+|||..+.-.+......+.++.++.
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 5788999999999875443333335566655543
No 378
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=31.11 E-value=33 Score=35.40 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=16.5
Q ss_pred cEEEEcCCCccHHHHHHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYAFAL 438 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~ 438 (1379)
.+.+++++|||||+++...+-.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999876544333
No 379
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=31.04 E-value=1.2e+02 Score=34.24 Aligned_cols=64 Identities=22% Similarity=0.209 Sum_probs=50.4
Q ss_pred cCCcEEEecchHHHHHHHHHHHhccc-cEEEEecCccc-----------CCCCceeeecHHHHHHHHhcCcccCCCccEE
Q 039491 442 HCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVSL-----------RPEASCLIMTTEILRSMLYRGADIIRDIEWV 509 (1379)
Q Consensus 442 ~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lV 509 (1379)
.+.++|+.++++.-+...++.+.+.. .+..++|+.+. +...+|+|+| +++.+| ..+.++++|
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va~~G-idi~~v~~V 100 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVAARG-LDIPQVDLV 100 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STTTCS-TTCCCCSEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chhhcC-ccccceeEE
Confidence 47899999999999999999998776 89999998763 2357899999 344454 456788888
Q ss_pred EE
Q 039491 510 IF 511 (1379)
Q Consensus 510 I~ 511 (1379)
|.
T Consensus 101 I~ 102 (300)
T 3i32_A 101 VH 102 (300)
T ss_dssp EE
T ss_pred EE
Confidence 84
No 380
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=31.01 E-value=39 Score=38.93 Aligned_cols=33 Identities=12% Similarity=0.190 Sum_probs=23.1
Q ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec
Q 039491 418 VFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA 450 (1379)
Q Consensus 418 VlV~ApTGSGKTlvae~aI~~~l~~~~raIyls 450 (1379)
+++.+..|.|||.++.-........|.|++++.
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 567789999999876433333335678888776
No 381
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=30.99 E-value=20 Score=41.63 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=17.3
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALAT 440 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l 440 (1379)
-.+++++||||||.+.+ ||..++
T Consensus 27 l~vi~G~NGaGKT~ile-AI~~~l 49 (371)
T 3auy_A 27 IVAIIGENGSGKSSIFE-AVFFAL 49 (371)
T ss_dssp EEEEEECTTSSHHHHHH-HHHHHH
T ss_pred eEEEECCCCCCHHHHHH-HHHHHH
Confidence 46899999999998854 554433
No 382
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=30.96 E-value=30 Score=40.24 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=18.5
Q ss_pred HHHHHHCCCc--EEEEcCCCccHHHH
Q 039491 408 AIYYLENGDS--VFVAAHTSAGKTVV 431 (1379)
Q Consensus 408 AI~~L~~g~s--VlV~ApTGSGKTlv 431 (1379)
.+..+++|-| +|..+.||||||..
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 4555677765 67889999999975
No 383
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=30.73 E-value=23 Score=35.62 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=16.5
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALAT 440 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l 440 (1379)
-.++.+|+|||||.+.. ||..++
T Consensus 25 ~~~I~G~NGsGKStil~-Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLD-AILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHH-HHHHHH
T ss_pred eEEEECCCCCCHHHHHH-HHHHHH
Confidence 46889999999998743 443333
No 384
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=30.70 E-value=37 Score=38.30 Aligned_cols=20 Identities=20% Similarity=0.209 Sum_probs=16.2
Q ss_pred CCCcEEEEcCCCccHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae 433 (1379)
.|.-+.+.+|+|||||+++-
T Consensus 79 ~g~iigI~G~~GsGKSTl~~ 98 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTAR 98 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45567899999999998754
No 385
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=30.59 E-value=31 Score=34.47 Aligned_cols=18 Identities=17% Similarity=0.471 Sum_probs=15.1
Q ss_pred cEEEEcCCCccHHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~ 434 (1379)
.+++.++.|||||.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSL 19 (168)
T ss_dssp EEEEESCTTSCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 478999999999987643
No 386
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=30.38 E-value=30 Score=35.54 Aligned_cols=17 Identities=18% Similarity=0.397 Sum_probs=14.5
Q ss_pred cEEEEcCCCccHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae 433 (1379)
.+++.++.|||||+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 47899999999998754
No 387
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=30.34 E-value=47 Score=37.36 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=21.9
Q ss_pred CcEEEEcC-CCccHHHHHHHHHHHHHhcCCcEEEe
Q 039491 416 DSVFVAAH-TSAGKTVVAEYAFALATKHCTRAVYT 449 (1379)
Q Consensus 416 ~sVlV~Ap-TGSGKTlvae~aI~~~l~~~~raIyl 449 (1379)
+.++|+++ .|.|||+++.-........+.||+++
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 139 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 139 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 45656654 69999987544333333567888886
No 388
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=30.33 E-value=33 Score=36.69 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=17.2
Q ss_pred CCCcEEEEcCCCccHHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~ 434 (1379)
.+..+++.++.|||||.++..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 346799999999999987643
No 389
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=30.25 E-value=37 Score=37.05 Aligned_cols=34 Identities=9% Similarity=0.122 Sum_probs=22.0
Q ss_pred CcEE-EEcCCCccHHHHHHHHHHHHHhcCCcEEEe
Q 039491 416 DSVF-VAAHTSAGKTVVAEYAFALATKHCTRAVYT 449 (1379)
Q Consensus 416 ~sVl-V~ApTGSGKTlvae~aI~~~l~~~~raIyl 449 (1379)
+.+. ..+..|.|||+++.-......+.|.+++++
T Consensus 19 ~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~Vlli 53 (262)
T 2ph1_A 19 SRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGIL 53 (262)
T ss_dssp CEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3443 456789999987654433333567888885
No 390
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=30.10 E-value=40 Score=36.34 Aligned_cols=33 Identities=15% Similarity=0.134 Sum_probs=20.9
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA 450 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls 450 (1379)
-+++.+..|+|||..+.-...... .+.+++++.
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 478899999999986543332222 555555543
No 391
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=30.05 E-value=36 Score=36.22 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=21.7
Q ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEe
Q 039491 418 VFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 449 (1379)
Q Consensus 418 VlV~ApTGSGKTlvae~aI~~~l~~~~raIyl 449 (1379)
+.|++.-|.|||+++.-......+.|.|++++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45588999999988654433333556777665
No 392
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=30.03 E-value=18 Score=40.99 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCccHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae 433 (1379)
..++++.+|+|+|||.++.
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4579999999999998764
No 393
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=29.88 E-value=40 Score=36.29 Aligned_cols=35 Identities=14% Similarity=0.112 Sum_probs=22.9
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEe
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 449 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyl 449 (1379)
.|.-+++.++.|||||+.+..... .+..+..++.+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~-~l~~~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH-RLVKDYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-HHTTTSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH-HHhcCCCceee
Confidence 466789999999999987654433 33224444443
No 394
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=29.84 E-value=33 Score=39.34 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=17.6
Q ss_pred HHHHHCCCc--EEEEcCCCccHHHH
Q 039491 409 IYYLENGDS--VFVAAHTSAGKTVV 431 (1379)
Q Consensus 409 I~~L~~g~s--VlV~ApTGSGKTlv 431 (1379)
+..+..|.| +|..+.||||||..
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCeEEEEEECCCCCCCceE
Confidence 444567765 67889999999975
No 395
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=29.81 E-value=27 Score=36.31 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=15.2
Q ss_pred cEEEEcCCCccHHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~ 434 (1379)
.+.+.++.|||||+++-+
T Consensus 3 ~i~i~G~~GsGKSTl~~~ 20 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQM 20 (204)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 578999999999997644
No 396
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=29.78 E-value=29 Score=37.88 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=17.4
Q ss_pred HCCCcEEEEcCCCccHHHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae 433 (1379)
..|..+.+.+|+|||||.++-
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCK 45 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 346789999999999998753
No 397
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=29.55 E-value=31 Score=36.27 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=15.6
Q ss_pred cEEEEcCCCccHHHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~a 435 (1379)
.+++.++.|||||+++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFI 20 (214)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999976543
No 398
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=29.53 E-value=31 Score=39.27 Aligned_cols=18 Identities=39% Similarity=0.551 Sum_probs=15.7
Q ss_pred CcEEEEcCCCccHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae 433 (1379)
..+++.+|+|+|||..+-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 679999999999998753
No 399
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=29.44 E-value=65 Score=36.81 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=14.2
Q ss_pred cEEEEcCCCccHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae 433 (1379)
-+.++||+|||||+.+-
T Consensus 94 iigI~GpsGSGKSTl~~ 110 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSR 110 (321)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47789999999998753
No 400
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=29.41 E-value=1.2e+02 Score=34.48 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=50.9
Q ss_pred cCCcEEEecchHHHHHHHHHHHhccc-cEEEEecCccc-----------CCCCceeeecHHHHHHHHhcCcccCCCccEE
Q 039491 442 HCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVSL-----------RPEASCLIMTTEILRSMLYRGADIIRDIEWV 509 (1379)
Q Consensus 442 ~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lV 509 (1379)
.+.++|+.++++.-+...++.+.+.. .+..++|+.+. +.+..|+|+|. .+.+| ..+.++++|
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G-idip~~~~V 338 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCARG-IDVEQVSVV 338 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTSS-CCCTTEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccccC-CCccCCCEE
Confidence 56789999999999999999999877 89999998762 34578999984 44455 346788888
Q ss_pred EE
Q 039491 510 IF 511 (1379)
Q Consensus 510 I~ 511 (1379)
|.
T Consensus 339 i~ 340 (412)
T 3fht_A 339 IN 340 (412)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 401
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=29.36 E-value=59 Score=43.80 Aligned_cols=52 Identities=8% Similarity=0.056 Sum_probs=40.5
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHHh-c-----------CCcEEEecchHHHHHHHHHHHhccc
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALATK-H-----------CTRAVYTAPIKTISNQKYRDFSGKF 467 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l~-~-----------~~raIylsPtkaLsnQk~~~~~~~f 467 (1379)
.+.+|.|.-|||||.+-.--++..+. . -.++++++=|++-+.+...++.+..
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 35699999999999875555555553 2 2479999999999999888887765
No 402
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=29.35 E-value=26 Score=41.93 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCccHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlva 432 (1379)
..++++.+|+|+|||.++
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999875
No 403
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=29.32 E-value=51 Score=42.45 Aligned_cols=57 Identities=18% Similarity=0.267 Sum_probs=35.7
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlva 432 (1379)
..-.|.+++..+.....+.+.+--+ ..+| .-|+.-. +...+.+++.+|.|+|||+++
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~p-l~~p---~~f~~~g---~~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELP-LRHP---ALFKAIG---VKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHH-HHCC---GGGTSCC---CCCCCEEEEECCTTSCHHHHH
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHH-ccCH---HHHhhcC---CCCCCeEEEECCCCCCHHHHH
Confidence 4568999998888888887754221 1111 1111100 112467999999999999864
No 404
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=29.15 E-value=34 Score=36.16 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCccHHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~ 434 (1379)
+..+++.++.|||||.++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~ 24 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEF 24 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 45689999999999997643
No 405
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=29.10 E-value=31 Score=35.73 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=15.1
Q ss_pred CcEEEEcCCCccHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae 433 (1379)
..+++.++.|||||.++.
T Consensus 16 ~~I~l~G~~GsGKsT~~~ 33 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCE 33 (203)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 358899999999998753
No 406
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=29.09 E-value=26 Score=36.57 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=15.2
Q ss_pred cEEEEcCCCccHHHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~a 435 (1379)
.+.+.++.|||||+++-+.
T Consensus 4 ~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4778999999999976433
No 407
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=29.09 E-value=40 Score=36.25 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=20.7
Q ss_pred EEEcCCCccHHHHHHHHHHHHHhcCCcEEEe
Q 039491 419 FVAAHTSAGKTVVAEYAFALATKHCTRAVYT 449 (1379)
Q Consensus 419 lV~ApTGSGKTlvae~aI~~~l~~~~raIyl 449 (1379)
+..+..|.|||+++.-......+.|.+++++
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 3456788999987654433333567888885
No 408
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=29.08 E-value=25 Score=35.70 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=12.7
Q ss_pred CCcEEEEcCCCccHHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~ 434 (1379)
+..+++.++.|||||.++..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 56789999999999997643
No 409
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=28.60 E-value=30 Score=37.51 Aligned_cols=22 Identities=9% Similarity=0.034 Sum_probs=17.6
Q ss_pred CCCcEEEEcCCCccHHHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~a 435 (1379)
.+..+++.++.|||||+++...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L 49 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNL 49 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3457999999999999976543
No 410
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=28.43 E-value=1.2e+02 Score=36.58 Aligned_cols=67 Identities=16% Similarity=0.183 Sum_probs=51.4
Q ss_pred hcCCcEEEecchHHHHHHHHHHHhccc----cEEEEecCccc-----------CCCCceeeecHHHHHHHHhcCcccCCC
Q 039491 441 KHCTRAVYTAPIKTISNQKYRDFSGKF----DVGLLTGDVSL-----------RPEASCLIMTTEILRSMLYRGADIIRD 505 (1379)
Q Consensus 441 ~~~~raIylsPtkaLsnQk~~~~~~~f----~VglltGdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l~~ 505 (1379)
..+.++|+.++++.-+...++.+++.+ .+..++|+.+. +.+.+|||+|. ++.+| ..+.+
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~G-iDip~ 410 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGARG-MDFPN 410 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTSS-CCCTT
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhhcC-CCccc
Confidence 346799999999999999999998763 78899998763 24578999984 45555 34677
Q ss_pred ccEEEEec
Q 039491 506 IEWVIFDE 513 (1379)
Q Consensus 506 v~lVI~DE 513 (1379)
+++||.-.
T Consensus 411 v~~VI~~~ 418 (563)
T 3i5x_A 411 VHEVLQIG 418 (563)
T ss_dssp CCEEEEES
T ss_pred CCEEEEEC
Confidence 88888543
No 411
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=28.14 E-value=37 Score=41.26 Aligned_cols=52 Identities=19% Similarity=0.221 Sum_probs=34.2
Q ss_pred ccccccccCCChHHHHHHHhhchhhhc-----cCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLAL-----DFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~-----~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlvae 433 (1379)
....|.++...+.....+.+++..+.. .+++. -.+.+++.+|+|+|||..+-
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~-------------ip~GvLL~GppGtGKTtLar 82 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGAR-------------IPKGVLLVGPPGVGKTHLAR 82 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCC-------------CCSEEEEECSSSSSHHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCC-------------CCceEEEECCCCCCHHHHHH
Confidence 356788888888887777775433221 11111 12459999999999998753
No 412
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=28.04 E-value=43 Score=43.22 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=34.4
Q ss_pred ccccccccCCChHHHHHHHhhchhhhccCCCCCCHHHHHHHHHHHCCCcEEEEcCCCccHHHHH
Q 039491 369 QKEAWVVSGSTEAIADRFHELVPDLALDFPFELDNFQKEAIYYLENGDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 369 ~~~~w~~~~~~~~~~~~~~~l~p~~a~~~pFeL~~~Q~eAI~~L~~g~sVlV~ApTGSGKTlva 432 (1379)
....|.+++..+..+..+.+.+..+.. .| .-|+.- .+..++.+++.+|+|+|||.++
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~-~~---~~~~~l---~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLR-HP---ALFKAI---GVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHH-CG---GGGTSS---CCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhh-CH---HHHHhc---CCCCCCeEEEECcCCCCHHHHH
Confidence 345788888777777777665422110 00 000000 0235788999999999999865
No 413
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=27.89 E-value=34 Score=36.82 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=17.0
Q ss_pred CCCcEEEEcCCCccHHHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~a 435 (1379)
+.+-+++.+|+||||++.+...
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L 49 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKL 49 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3456889999999999876443
No 414
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=27.88 E-value=26 Score=47.84 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=17.0
Q ss_pred HCCCcEEEEcCCCccHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVV 431 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlv 431 (1379)
..|+.|-++++||||||..
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL 1121 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTV 1121 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSH
T ss_pred CCCCEEEEECCCCChHHHH
Confidence 4688999999999999975
No 415
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=27.87 E-value=28 Score=37.84 Aligned_cols=19 Identities=21% Similarity=0.473 Sum_probs=16.7
Q ss_pred HCCCcEEEEcCCCccHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVV 431 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlv 431 (1379)
..|+-+.+.+|.|||||+.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 4688899999999999975
No 416
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=27.85 E-value=28 Score=37.66 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=16.7
Q ss_pred CCCcEEEEcCCCccHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae 433 (1379)
.+..+++.+|.|||||+.+-
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k 45 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQ 45 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45789999999999998653
No 417
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=27.80 E-value=48 Score=40.97 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=20.5
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALAT 440 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l 440 (1379)
+..+++|++.||||||++.-..|...+
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl 239 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSIL 239 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999987655555444
No 418
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=27.64 E-value=48 Score=33.02 Aligned_cols=65 Identities=6% Similarity=0.240 Sum_probs=48.6
Q ss_pred CCccHHHHHHHH-hCCCCHHHHHhhcCC-CCCceehhhhhHHHHHHHHHHhhhhcCCHHHHHHHHHHH
Q 039491 1296 LKFGLVEVVYEW-AKGTPFADICELTDV-PEGLIVRTIVRLDETCREFRNAAAIMGNSALYKKMETAS 1361 (1379)
Q Consensus 1296 ~~f~l~~vvyeW-A~G~sF~~I~~~Tdv-~EG~IVR~i~RLdEl~rqv~~Aa~~igd~~L~~Km~~a~ 1361 (1379)
++..+++-+.++ |.|+|+.+||..-+| ..-||=|++.+=.|...++..| +..+...+..++.+..
T Consensus 13 ~t~e~~e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~~~ef~e~~~~A-r~~~~~~~~~~~~~ia 79 (140)
T 4dyq_A 13 YMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYAKA-TEARADSIFEEIFEIA 79 (140)
T ss_dssp CCTTHHHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 455666655555 799999999999999 7899999999988887777765 4445555555555433
No 419
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=27.59 E-value=25 Score=29.90 Aligned_cols=50 Identities=18% Similarity=0.192 Sum_probs=36.1
Q ss_pred CCccHHHHHHH-HhCCCCHHHHHhhcCCCCCceehhhhhHHHHHHHHHHhh
Q 039491 1296 LKFGLVEVVYE-WAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAA 1345 (1379)
Q Consensus 1296 ~~f~l~~vvye-WA~G~sF~~I~~~Tdv~EG~IVR~i~RLdEl~rqv~~Aa 1345 (1379)
+...--+|+.. +..|+|+.+|.+..++.+++|=+.+.|.-.-|++.-...
T Consensus 16 L~~~~r~il~l~~~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~~~ 66 (70)
T 2o8x_A 16 LTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPD 66 (70)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444456654 689999999999999999999998888877777654433
No 420
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=27.57 E-value=38 Score=39.52 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=17.5
Q ss_pred HHHHHCCCc--EEEEcCCCccHHHH
Q 039491 409 IYYLENGDS--VFVAAHTSAGKTVV 431 (1379)
Q Consensus 409 I~~L~~g~s--VlV~ApTGSGKTlv 431 (1379)
+..++.|.| +|..+.||||||..
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceE
Confidence 344567765 67889999999975
No 421
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=27.53 E-value=21 Score=38.82 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=16.8
Q ss_pred HCCCcEEEEcCCCccHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVV 431 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlv 431 (1379)
..|+-+.+.+|.|||||+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4688899999999999975
No 422
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=27.49 E-value=38 Score=38.90 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=18.7
Q ss_pred HHHHHHCCCc--EEEEcCCCccHHHH
Q 039491 408 AIYYLENGDS--VFVAAHTSAGKTVV 431 (1379)
Q Consensus 408 AI~~L~~g~s--VlV~ApTGSGKTlv 431 (1379)
.+..+..|.| +|..+.||||||..
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyT 97 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYT 97 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEE
Confidence 4556677765 67889999999975
No 423
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=27.44 E-value=38 Score=39.13 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=17.4
Q ss_pred HHHHHCCCc--EEEEcCCCccHHHH
Q 039491 409 IYYLENGDS--VFVAAHTSAGKTVV 431 (1379)
Q Consensus 409 I~~L~~g~s--VlV~ApTGSGKTlv 431 (1379)
+..+++|.| +|..+.||||||..
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyT 100 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYT 100 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEe
Confidence 344567765 67889999999975
No 424
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=27.36 E-value=37 Score=34.56 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=16.9
Q ss_pred HCCCcEEEEcCCCccHHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlva 432 (1379)
..|+-+.+.+|.|||||...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 56778889999999999753
No 425
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=27.25 E-value=39 Score=39.20 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=17.6
Q ss_pred HHHHHCCCc--EEEEcCCCccHHHH
Q 039491 409 IYYLENGDS--VFVAAHTSAGKTVV 431 (1379)
Q Consensus 409 I~~L~~g~s--VlV~ApTGSGKTlv 431 (1379)
+..++.|.| +|..+.||||||..
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyT 94 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYT 94 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeE
Confidence 445567765 67889999999975
No 426
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=27.22 E-value=39 Score=39.18 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=17.3
Q ss_pred HHHHHCCCc--EEEEcCCCccHHHH
Q 039491 409 IYYLENGDS--VFVAAHTSAGKTVV 431 (1379)
Q Consensus 409 I~~L~~g~s--VlV~ApTGSGKTlv 431 (1379)
+..++.|.| +|..+.||||||..
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEE
Confidence 344567765 67889999999975
No 427
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=27.21 E-value=39 Score=39.34 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=18.3
Q ss_pred HHHHHHCCCc--EEEEcCCCccHHHH
Q 039491 408 AIYYLENGDS--VFVAAHTSAGKTVV 431 (1379)
Q Consensus 408 AI~~L~~g~s--VlV~ApTGSGKTlv 431 (1379)
.+..++.|.| +|..+.||||||..
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceE
Confidence 4555677775 57789999999975
No 428
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=27.21 E-value=39 Score=39.56 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=17.5
Q ss_pred HHHHHCCCc--EEEEcCCCccHHHH
Q 039491 409 IYYLENGDS--VFVAAHTSAGKTVV 431 (1379)
Q Consensus 409 I~~L~~g~s--VlV~ApTGSGKTlv 431 (1379)
+..++.|.| +|..+.||||||..
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEe
Confidence 444567765 67789999999975
No 429
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=27.16 E-value=24 Score=43.86 Aligned_cols=16 Identities=6% Similarity=0.279 Sum_probs=14.6
Q ss_pred cEEEEcCCCccHHHHH
Q 039491 417 SVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 417 sVlV~ApTGSGKTlva 432 (1379)
++++.+|+|+|||..|
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999764
No 430
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=26.96 E-value=62 Score=35.24 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=24.3
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCc-EEEe
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTR-AVYT 449 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~r-aIyl 449 (1379)
+|.-+++.++.|||||..+.......-..+.. ++++
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 46778999999999999765544333344555 4443
No 431
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=26.96 E-value=51 Score=48.69 Aligned_cols=40 Identities=20% Similarity=0.132 Sum_probs=27.6
Q ss_pred hccCCCCCCHHHHH-HHHH---HHCCCcEEEEcCCCccHHHHHH
Q 039491 394 ALDFPFELDNFQKE-AIYY---LENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 394 a~~~pFeL~~~Q~e-AI~~---L~~g~sVlV~ApTGSGKTlvae 433 (1379)
....++.+.+.+.. ++.. +.....|+++||||||||.+.-
T Consensus 881 ~~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 881 AKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 33467776665554 3332 3456679999999999999854
No 432
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=26.91 E-value=37 Score=39.41 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=17.3
Q ss_pred HHHHHCCCc--EEEEcCCCccHHHH
Q 039491 409 IYYLENGDS--VFVAAHTSAGKTVV 431 (1379)
Q Consensus 409 I~~L~~g~s--VlV~ApTGSGKTlv 431 (1379)
|..+..|.| +|..+.||||||..
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceE
Confidence 344566765 67889999999975
No 433
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=26.80 E-value=19 Score=39.28 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCccHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae 433 (1379)
+..++++++.|||||.++-
T Consensus 32 ~~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp CEEEEEESCGGGTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999998753
No 434
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=26.76 E-value=43 Score=39.70 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=17.6
Q ss_pred HHHHHCCCc--EEEEcCCCccHHHH
Q 039491 409 IYYLENGDS--VFVAAHTSAGKTVV 431 (1379)
Q Consensus 409 I~~L~~g~s--VlV~ApTGSGKTlv 431 (1379)
|..++.|.| +|..+.||||||..
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyT 171 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHT 171 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeE
Confidence 444567765 67889999999975
No 435
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=26.74 E-value=34 Score=39.56 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=17.1
Q ss_pred HHHHHCCCc--EEEEcCCCccHHHH
Q 039491 409 IYYLENGDS--VFVAAHTSAGKTVV 431 (1379)
Q Consensus 409 I~~L~~g~s--VlV~ApTGSGKTlv 431 (1379)
|..++.|-| +|..+.||||||..
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeE
Confidence 344456665 67889999999975
No 436
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=26.59 E-value=38 Score=39.35 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=17.6
Q ss_pred HHHHHCCCc--EEEEcCCCccHHHH
Q 039491 409 IYYLENGDS--VFVAAHTSAGKTVV 431 (1379)
Q Consensus 409 I~~L~~g~s--VlV~ApTGSGKTlv 431 (1379)
+..+.+|.| +|..+.||||||..
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceee
Confidence 444567765 67889999999975
No 437
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=26.49 E-value=29 Score=37.52 Aligned_cols=22 Identities=27% Similarity=0.199 Sum_probs=17.5
Q ss_pred HCCCcEEEEcCCCccHHHHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~ 434 (1379)
..|.-+-+.+|.|||||+++-+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~ 44 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEK 44 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 4566678999999999997643
No 438
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=26.49 E-value=40 Score=39.25 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=18.1
Q ss_pred HHHHHHCCCc--EEEEcCCCccHHHH
Q 039491 408 AIYYLENGDS--VFVAAHTSAGKTVV 431 (1379)
Q Consensus 408 AI~~L~~g~s--VlV~ApTGSGKTlv 431 (1379)
.+..++.|.| +|..+.||||||..
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceE
Confidence 3445567765 67889999999975
No 439
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=26.45 E-value=44 Score=42.62 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=19.3
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHH
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALAT 440 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l 440 (1379)
..++++.+|+|+|||.++. +++..+
T Consensus 201 ~~~vLL~G~pGtGKT~la~-~la~~l 225 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE-GLAQQI 225 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH-HHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH-HHHHHH
Confidence 4589999999999999875 344443
No 440
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=26.44 E-value=65 Score=34.42 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=23.0
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCC-cEEEe
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCT-RAVYT 449 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~-raIyl 449 (1379)
+|.-+++.++.|||||..+.......-..+. .++++
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 4667889999999999986544333323443 44433
No 441
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=26.41 E-value=51 Score=35.72 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=22.1
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHhc----CCcEEEe
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATKH----CTRAVYT 449 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~~----~~raIyl 449 (1379)
.+|.-+++.++.|||||..+.......-.. +..++++
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 467778999999999998865443332233 5566554
No 442
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=26.36 E-value=41 Score=39.09 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=18.3
Q ss_pred HHHHHHCCCc--EEEEcCCCccHHHH
Q 039491 408 AIYYLENGDS--VFVAAHTSAGKTVV 431 (1379)
Q Consensus 408 AI~~L~~g~s--VlV~ApTGSGKTlv 431 (1379)
.+..+.+|.| +|..+.||||||..
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyT 109 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYT 109 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceE
Confidence 3455667765 57889999999975
No 443
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=26.22 E-value=41 Score=39.20 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=18.0
Q ss_pred HHHHHHCCCc--EEEEcCCCccHHHH
Q 039491 408 AIYYLENGDS--VFVAAHTSAGKTVV 431 (1379)
Q Consensus 408 AI~~L~~g~s--VlV~ApTGSGKTlv 431 (1379)
.+..++.|.| +|..+.||||||..
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 3455567765 67889999999975
No 444
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=26.11 E-value=38 Score=35.56 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=16.1
Q ss_pred CcEEEEcCCCccHHHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~a 435 (1379)
..+.++++.|||||+++-+.
T Consensus 13 ~iIgltG~~GSGKSTva~~L 32 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEIL 32 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35778999999999986544
No 445
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=25.99 E-value=23 Score=48.34 Aligned_cols=40 Identities=13% Similarity=0.236 Sum_probs=25.0
Q ss_pred CCCccEEEEeccCCCCCccchhHHHHHHHHcCccceEEEe
Q 039491 503 IRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLL 542 (1379)
Q Consensus 503 l~~v~lVI~DEaH~l~d~~rG~v~eeii~~Lp~~vqiIlL 542 (1379)
+++-+++|+||+=--.|..-...+.+.+..+.++.-+|+.
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iii 609 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIII 609 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEE
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4566789999988877776555555555544443333433
No 446
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=25.88 E-value=1.1e+02 Score=30.91 Aligned_cols=79 Identities=9% Similarity=-0.021 Sum_probs=54.1
Q ss_pred CccHHHHHHHHHHHHHhcCCcEEEecchHHHHHHHHHHHhccc-cEEEEecCccc-----------CCCCceeeecHHHH
Q 039491 425 SAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVSL-----------RPEASCLIMTTEIL 492 (1379)
Q Consensus 425 GSGKTlvae~aI~~~l~~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~i-----------n~~a~IlV~TpEiL 492 (1379)
...|... ++.++... .+.++|+.++++.-+...+..+.... .+..++|+.+. +....|+|+|.
T Consensus 15 ~~~K~~~-L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~--- 89 (172)
T 1t5i_A 15 DNEKNRK-LFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN--- 89 (172)
T ss_dssp GGGHHHH-HHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS---
T ss_pred hHHHHHH-HHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC---
Confidence 3556542 22333322 45689999999999999999998876 89999998752 34567888883
Q ss_pred HHHHhcCcccCCCccEEEE
Q 039491 493 RSMLYRGADIIRDIEWVIF 511 (1379)
Q Consensus 493 ~smL~~~~~~l~~v~lVI~ 511 (1379)
.+.+|- .+.++++||.
T Consensus 90 --~~~~Gl-di~~~~~Vi~ 105 (172)
T 1t5i_A 90 --LFGRGM-DIERVNIAFN 105 (172)
T ss_dssp --CCSTTC-CGGGCSEEEE
T ss_pred --chhcCc-chhhCCEEEE
Confidence 233343 3567777775
No 447
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=25.76 E-value=55 Score=36.45 Aligned_cols=35 Identities=14% Similarity=0.046 Sum_probs=23.8
Q ss_pred CCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEe
Q 039491 415 GDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 449 (1379)
Q Consensus 415 g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyl 449 (1379)
.+.+.|++.-|.|||+++.-......+.|.+|+++
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 45566778999999987654333333557787776
No 448
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=25.68 E-value=41 Score=35.78 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=15.2
Q ss_pred cEEEEcCCCccHHHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~a 435 (1379)
.+++.+|+||||++.+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~L 20 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRL 20 (206)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788999999999876543
No 449
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=25.62 E-value=1.4e+02 Score=36.47 Aligned_cols=67 Identities=16% Similarity=0.183 Sum_probs=51.2
Q ss_pred hcCCcEEEecchHHHHHHHHHHHhccc----cEEEEecCccc-----------CCCCceeeecHHHHHHHHhcCcccCCC
Q 039491 441 KHCTRAVYTAPIKTISNQKYRDFSGKF----DVGLLTGDVSL-----------RPEASCLIMTTEILRSMLYRGADIIRD 505 (1379)
Q Consensus 441 ~~~~raIylsPtkaLsnQk~~~~~~~f----~VglltGdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l~~ 505 (1379)
..+.++|+.++++.-+...++.+++.+ .+..++|+.+. +.+..|||+|. .+.+| ..+.+
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~~G-iDip~ 359 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGARG-MDFPN 359 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTSS-CCCTT
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhhcC-CCccc
Confidence 346799999999999999999998763 78899998763 24578999984 45555 34677
Q ss_pred ccEEEEec
Q 039491 506 IEWVIFDE 513 (1379)
Q Consensus 506 v~lVI~DE 513 (1379)
+++||.-.
T Consensus 360 v~~VI~~~ 367 (579)
T 3sqw_A 360 VHEVLQIG 367 (579)
T ss_dssp CCEEEEES
T ss_pred CCEEEEcC
Confidence 88888544
No 450
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=25.51 E-value=53 Score=37.73 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=24.3
Q ss_pred CcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEec
Q 039491 416 DSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTA 450 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyls 450 (1379)
+-+|+.+.-|.|||.++.-........|.+++++.
T Consensus 17 ~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45678899999999886544333345677777764
No 451
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=25.47 E-value=58 Score=36.32 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=21.3
Q ss_pred CHHHHH-HHHHHHCCC-----cEEEEcCCCccHHHHHH
Q 039491 402 DNFQKE-AIYYLENGD-----SVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 402 ~~~Q~e-AI~~L~~g~-----sVlV~ApTGSGKTlvae 433 (1379)
++.+-. ++...++++ .+++.+|.|+|||..|.
T Consensus 85 ~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 85 DPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 344432 344555543 59999999999998653
No 452
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=25.46 E-value=80 Score=35.32 Aligned_cols=65 Identities=20% Similarity=0.188 Sum_probs=49.6
Q ss_pred hcCCcEEEecchHHHHHHHHHHHhccc-cEEEEecCccc-----------CCCCceeeecHHHHHHHHhcCcccCCCccE
Q 039491 441 KHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVSL-----------RPEASCLIMTTEILRSMLYRGADIIRDIEW 508 (1379)
Q Consensus 441 ~~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l~~v~l 508 (1379)
..+.++|+.++++.-+...++.+++.. .+..++|+.+. +.+..|+|+|. ++..| ..+.++++
T Consensus 236 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G-id~~~~~~ 309 (367)
T 1hv8_A 236 NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSRG-IDVNDLNC 309 (367)
T ss_dssp STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHHH-CCCSCCSE
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhcC-CCcccCCE
Confidence 456789999999999999999998876 89999998762 34567889884 33333 24667888
Q ss_pred EEE
Q 039491 509 VIF 511 (1379)
Q Consensus 509 VI~ 511 (1379)
||.
T Consensus 310 Vi~ 312 (367)
T 1hv8_A 310 VIN 312 (367)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 453
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=25.40 E-value=60 Score=34.19 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=23.0
Q ss_pred EEEcCCCccHHHHHHHHHHHHHhcCCcEEEe--cchHHH
Q 039491 419 FVAAHTSAGKTVVAEYAFALATKHCTRAVYT--APIKTI 455 (1379)
Q Consensus 419 lV~ApTGSGKTlvae~aI~~~l~~~~raIyl--sPtkaL 455 (1379)
++....|.|||.++.-......+.| +++++ -|...+
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~ 42 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSA 42 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHH
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCH
Confidence 4567889999987654443333567 88884 354333
No 454
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=25.39 E-value=57 Score=35.92 Aligned_cols=35 Identities=26% Similarity=0.247 Sum_probs=24.2
Q ss_pred cEEEEc-CCCccHHHHHHHHHHHHHhcCCcEEEecc
Q 039491 417 SVFVAA-HTSAGKTVVAEYAFALATKHCTRAVYTAP 451 (1379)
Q Consensus 417 sVlV~A-pTGSGKTlvae~aI~~~l~~~~raIylsP 451 (1379)
.++|++ .||+|||++....+....++|.++.|.=|
T Consensus 28 ~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKP 63 (251)
T 3fgn_A 28 ILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKP 63 (251)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Confidence 455555 78999999876555455567888887644
No 455
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=25.35 E-value=24 Score=38.93 Aligned_cols=19 Identities=26% Similarity=0.580 Sum_probs=17.0
Q ss_pred HCCCcEEEEcCCCccHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVV 431 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlv 431 (1379)
..|+-+.+.+|.|||||+.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4688999999999999985
No 456
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=25.28 E-value=42 Score=35.75 Aligned_cols=19 Identities=11% Similarity=0.298 Sum_probs=15.5
Q ss_pred cEEEEcCCCccHHHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~a 435 (1379)
.+++.++.|||||+++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLV 20 (223)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999976543
No 457
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=25.28 E-value=43 Score=39.36 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=17.7
Q ss_pred HHHHHCCCc--EEEEcCCCccHHHH
Q 039491 409 IYYLENGDS--VFVAAHTSAGKTVV 431 (1379)
Q Consensus 409 I~~L~~g~s--VlV~ApTGSGKTlv 431 (1379)
|..+..|.| +|..+.||||||..
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyT 151 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHT 151 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHH
T ss_pred HHHHhcCCceEEEEecCCCCCCCeE
Confidence 445567765 67889999999975
No 458
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.07 E-value=48 Score=39.17 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=19.4
Q ss_pred HHHHHHCCCc--EEEEcCCCccHHHHH
Q 039491 408 AIYYLENGDS--VFVAAHTSAGKTVVA 432 (1379)
Q Consensus 408 AI~~L~~g~s--VlV~ApTGSGKTlva 432 (1379)
.|..++.|.| +|..+.||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 4566678876 577899999999763
No 459
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=24.89 E-value=1.4e+02 Score=34.35 Aligned_cols=82 Identities=13% Similarity=0.140 Sum_probs=54.4
Q ss_pred CCccHHHHHHHHHHHHH--hcCCcEEEecchHHHHHHHHHHHhccc-cEEEEec--------Cccc-----------CCC
Q 039491 424 TSAGKTVVAEYAFALAT--KHCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTG--------DVSL-----------RPE 481 (1379)
Q Consensus 424 TGSGKTlvae~aI~~~l--~~~~raIylsPtkaLsnQk~~~~~~~f-~VglltG--------dv~i-----------n~~ 481 (1379)
..++|.....-.+.... ..+.++|+.++++.-+...++.+.+.. .+..++| +.+. +.+
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~ 419 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE 419 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCC
Confidence 45667654433333333 458899999999999999999998876 8999999 4442 123
Q ss_pred CceeeecHHHHHHHHhcCcccCCCccEEEE
Q 039491 482 ASCLIMTTEILRSMLYRGADIIRDIEWVIF 511 (1379)
Q Consensus 482 a~IlV~TpEiL~smL~~~~~~l~~v~lVI~ 511 (1379)
..|+|+|. .+..| ..+..+++||+
T Consensus 420 ~~vLv~T~-----~~~~G-ldl~~~~~Vi~ 443 (494)
T 1wp9_A 420 FNVLVATS-----VGEEG-LDVPEVDLVVF 443 (494)
T ss_dssp CSEEEECG-----GGGGG-GGSTTCCEEEE
T ss_pred ceEEEECC-----ccccC-CCchhCCEEEE
Confidence 57888872 33334 34566777774
No 460
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=24.87 E-value=29 Score=39.46 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=17.0
Q ss_pred HCCCcEEEEcCCCccHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVV 431 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlv 431 (1379)
..|+.+.+++|+|||||..
T Consensus 78 ~~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp CTTCEEEEESSSCHHHHHH
T ss_pred cCCCEEEEECCCCchHHHH
Confidence 4688999999999999985
No 461
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=24.84 E-value=25 Score=37.69 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=16.9
Q ss_pred HCCCcEEEEcCCCccHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVV 431 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlv 431 (1379)
..|+-+.+.+|.|||||+.
T Consensus 33 ~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp ETTCCEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4688899999999999985
No 462
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=24.81 E-value=56 Score=37.36 Aligned_cols=36 Identities=19% Similarity=0.084 Sum_probs=22.3
Q ss_pred CCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEe
Q 039491 414 NGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 449 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyl 449 (1379)
++..+.+.+++|+|||..+..........+.++.++
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~ 90 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVI 90 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 456788999999999986443322222345555444
No 463
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=24.78 E-value=41 Score=39.33 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=18.5
Q ss_pred HHHHHHCCCc--EEEEcCCCccHHHH
Q 039491 408 AIYYLENGDS--VFVAAHTSAGKTVV 431 (1379)
Q Consensus 408 AI~~L~~g~s--VlV~ApTGSGKTlv 431 (1379)
.+..+..|.| +|..+.||||||..
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyT 96 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFT 96 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEe
Confidence 4555677875 67789999999975
No 464
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=24.75 E-value=61 Score=35.12 Aligned_cols=32 Identities=9% Similarity=0.018 Sum_probs=21.3
Q ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEe
Q 039491 418 VFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 449 (1379)
Q Consensus 418 VlV~ApTGSGKTlvae~aI~~~l~~~~raIyl 449 (1379)
+.|++.-|.|||+++.-......+.|.+++++
T Consensus 4 I~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 4 VAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 44578889999987644333333567788774
No 465
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=24.63 E-value=34 Score=38.39 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=11.9
Q ss_pred CcEEEEcCCCccHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae 433 (1379)
.-+.|+|+.|||||+++-
T Consensus 6 ~iIgItG~sGSGKSTva~ 23 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKH 23 (290)
T ss_dssp CEEEEESCC---CCTHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347789999999998764
No 466
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=24.61 E-value=34 Score=36.00 Aligned_cols=20 Identities=25% Similarity=0.209 Sum_probs=16.1
Q ss_pred CcEEEEcCCCccHHHHHHHH
Q 039491 416 DSVFVAAHTSAGKTVVAEYA 435 (1379)
Q Consensus 416 ~sVlV~ApTGSGKTlvae~a 435 (1379)
..+.+.++.|||||+++-..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46789999999999976543
No 467
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=24.58 E-value=60 Score=34.48 Aligned_cols=31 Identities=16% Similarity=0.165 Sum_probs=20.1
Q ss_pred EEEcCCCccHHHHHHHHHHHHHhc-CCcEEEe
Q 039491 419 FVAAHTSAGKTVVAEYAFALATKH-CTRAVYT 449 (1379)
Q Consensus 419 lV~ApTGSGKTlvae~aI~~~l~~-~~raIyl 449 (1379)
+..+.-|.|||+++.-......+. |.+++++
T Consensus 9 v~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 40 (245)
T 3ea0_A 9 FVSAKGGDGGSCIAANFAFALSQEPDIHVLAV 40 (245)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTTSTTCCEEEE
T ss_pred EECCCCCcchHHHHHHHHHHHHhCcCCCEEEE
Confidence 445678999998764433333344 7777776
No 468
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=24.27 E-value=34 Score=37.11 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=14.8
Q ss_pred cEEEEcCCCccHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae 433 (1379)
.+.|+++.|||||+++.
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999764
No 469
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=24.25 E-value=36 Score=49.57 Aligned_cols=22 Identities=18% Similarity=0.447 Sum_probs=19.0
Q ss_pred HHCCCcEEEEcCCCccHHHHHH
Q 039491 412 LENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 412 L~~g~sVlV~ApTGSGKTlvae 433 (1379)
+..++.++++||||+|||..+.
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la~ 1285 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIMN 1285 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHHH
Confidence 4668999999999999998763
No 470
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=24.14 E-value=47 Score=39.37 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=19.0
Q ss_pred HHHHHHCCCc--EEEEcCCCccHHHH
Q 039491 408 AIYYLENGDS--VFVAAHTSAGKTVV 431 (1379)
Q Consensus 408 AI~~L~~g~s--VlV~ApTGSGKTlv 431 (1379)
.|..++.|.| +|..+.||||||..
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyT 155 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYT 155 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeE
Confidence 5666777876 57789999999975
No 471
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=24.12 E-value=42 Score=34.73 Aligned_cols=16 Identities=19% Similarity=0.493 Sum_probs=13.8
Q ss_pred cEEEEcCCCccHHHHH
Q 039491 417 SVFVAAHTSAGKTVVA 432 (1379)
Q Consensus 417 sVlV~ApTGSGKTlva 432 (1379)
.+.+.+|.|||||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999864
No 472
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=24.11 E-value=63 Score=35.60 Aligned_cols=32 Identities=9% Similarity=0.123 Sum_probs=21.0
Q ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEe
Q 039491 418 VFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 449 (1379)
Q Consensus 418 VlV~ApTGSGKTlvae~aI~~~l~~~~raIyl 449 (1379)
+.|++..|.|||+++.-......+.|.+++++
T Consensus 5 Iavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 5 CAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 45578899999987644333333457777764
No 473
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=24.09 E-value=68 Score=35.42 Aligned_cols=35 Identities=11% Similarity=0.202 Sum_probs=22.8
Q ss_pred CCcEEEEc---CCCccHHHHHHHHHHHHHhcCCcEEEe
Q 039491 415 GDSVFVAA---HTSAGKTVVAEYAFALATKHCTRAVYT 449 (1379)
Q Consensus 415 g~sVlV~A---pTGSGKTlvae~aI~~~l~~~~raIyl 449 (1379)
++.+.|+. .-|.|||+++.-........|.+++++
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 55555554 889999987654433333567788773
No 474
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=24.04 E-value=65 Score=41.33 Aligned_cols=59 Identities=17% Similarity=0.261 Sum_probs=42.2
Q ss_pred HHHHHHHHHhHcCcccCCCccchhhHHhhhccCCchHHHHHHhhhcC-CCCCCH-HHHHHHhh
Q 039491 1183 DFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQ-LDDLEP-EEAVAIMS 1243 (1379)
Q Consensus 1183 e~~~r~~VL~~LgyID~~~~v~lKGrvAceI~s~~EL~lTEll~~n~-l~~l~p-~eiaAlLS 1243 (1379)
...+-++.|..+|.||+++.+|--||.++++.- +--++-+|+.+. |.-+++ -.|||+||
T Consensus 490 ~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl--~p~~~~~l~~~~~~~c~~~~l~i~a~ls 550 (773)
T 2xau_A 490 TMMRALEELNYLACLDDEGNLTPLGRLASQFPL--DPMLAVMLIGSFEFQCSQEILTIVAMLS 550 (773)
T ss_dssp HHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSS--CHHHHHHHHHGGGGTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCcccCCCcChhhhhhccccC--CHHHHHHHHhhcccCchhHHHHHHHhcc
Confidence 355667799999999999999999999999996 344555555544 433332 45666666
No 475
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=23.90 E-value=94 Score=36.75 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=24.9
Q ss_pred HHHHHHHHHH---HCCCcEEEEcCCCccHHHHHHH
Q 039491 403 NFQKEAIYYL---ENGDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 403 ~~Q~eAI~~L---~~g~sVlV~ApTGSGKTlvae~ 434 (1379)
..-.++|..+ -+|+.+.+.+|+|+|||..+..
T Consensus 159 ~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~ 193 (422)
T 3ice_A 159 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQN 193 (422)
T ss_dssp HHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHH
T ss_pred cccceeeeeeeeecCCcEEEEecCCCCChhHHHHH
Confidence 4445667665 5799999999999999987543
No 476
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=23.89 E-value=23 Score=38.58 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=16.7
Q ss_pred HCCCcEEEEcCCCccHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVV 431 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlv 431 (1379)
..|+-+.+.+|.|||||+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp CTTEEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4688899999999999985
No 477
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=23.88 E-value=89 Score=35.36 Aligned_cols=66 Identities=23% Similarity=0.304 Sum_probs=51.6
Q ss_pred cCCcEEEecchHHHHHHHHHHHhccc-cEEEEecCccc-----------CCCCceeeecHHHHHHHHhcCcccCCCccEE
Q 039491 442 HCTRAVYTAPIKTISNQKYRDFSGKF-DVGLLTGDVSL-----------RPEASCLIMTTEILRSMLYRGADIIRDIEWV 509 (1379)
Q Consensus 442 ~~~raIylsPtkaLsnQk~~~~~~~f-~VglltGdv~i-----------n~~a~IlV~TpEiL~smL~~~~~~l~~v~lV 509 (1379)
.+.++|+.++++.-+...++.+++.. ++..++|+.+. +.+..|+|+|. ++..| ..+.++++|
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G-idip~~~~V 315 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLARG-IDIPTVSMV 315 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGSSS-CCCTTEEEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhcC-CCcccCCEE
Confidence 45789999999999999999998877 89999998762 34568999984 44455 456788888
Q ss_pred EEec
Q 039491 510 IFDE 513 (1379)
Q Consensus 510 I~DE 513 (1379)
|.-.
T Consensus 316 i~~~ 319 (395)
T 3pey_A 316 VNYD 319 (395)
T ss_dssp EESS
T ss_pred EEcC
Confidence 8643
No 478
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=23.75 E-value=36 Score=36.68 Aligned_cols=19 Identities=47% Similarity=0.585 Sum_probs=16.9
Q ss_pred HCCCcEEEEcCCCccHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVV 431 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlv 431 (1379)
..|+-+.+.+|.|||||+.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4688899999999999975
No 479
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=23.73 E-value=42 Score=39.27 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=17.1
Q ss_pred HHHHHCCCc--EEEEcCCCccHHHH
Q 039491 409 IYYLENGDS--VFVAAHTSAGKTVV 431 (1379)
Q Consensus 409 I~~L~~g~s--VlV~ApTGSGKTlv 431 (1379)
+..++.|.| +|..+.||||||..
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCccee
Confidence 344556665 67889999999975
No 480
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=23.69 E-value=35 Score=38.05 Aligned_cols=19 Identities=16% Similarity=0.398 Sum_probs=16.9
Q ss_pred HCCCcEEEEcCCCccHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVV 431 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlv 431 (1379)
..|+-+.+.+|.|||||+.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp ETTSEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 5688899999999999985
No 481
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=23.59 E-value=37 Score=37.16 Aligned_cols=19 Identities=16% Similarity=0.501 Sum_probs=16.9
Q ss_pred HCCCcEEEEcCCCccHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVV 431 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlv 431 (1379)
..|+-+.+.+|.|||||+.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4688899999999999985
No 482
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=23.31 E-value=54 Score=35.11 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=17.4
Q ss_pred CCCcEEEEcCCCccHHHHHHH
Q 039491 414 NGDSVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 414 ~g~sVlV~ApTGSGKTlvae~ 434 (1379)
.+..+.+.++.|||||.++..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~ 35 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKI 35 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 456789999999999997654
No 483
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=23.31 E-value=49 Score=39.57 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=18.2
Q ss_pred HHHHHHCCCc--EEEEcCCCccHHHH
Q 039491 408 AIYYLENGDS--VFVAAHTSAGKTVV 431 (1379)
Q Consensus 408 AI~~L~~g~s--VlV~ApTGSGKTlv 431 (1379)
.+..++.|-| +|..+.||||||..
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyT 153 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYT 153 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEE
Confidence 3455567765 67889999999975
No 484
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=23.31 E-value=62 Score=37.38 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=23.2
Q ss_pred cEEEEcCCCccHHHHHHH-HHHHHH-hcCCcEEEecc
Q 039491 417 SVFVAAHTSAGKTVVAEY-AFALAT-KHCTRAVYTAP 451 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~-aI~~~l-~~~~raIylsP 451 (1379)
-+|+++..|.|||.++.- |+..+. ..|.|++++..
T Consensus 20 i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~ 56 (354)
T 2woj_A 20 WIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIST 56 (354)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 457788999999987543 333332 56777777643
No 485
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=23.15 E-value=44 Score=38.73 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=18.9
Q ss_pred HHHHHHCCCc--EEEEcCCCccHHHHH
Q 039491 408 AIYYLENGDS--VFVAAHTSAGKTVVA 432 (1379)
Q Consensus 408 AI~~L~~g~s--VlV~ApTGSGKTlva 432 (1379)
.+..+++|.| +|..+.||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 4555677876 577899999999763
No 486
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=23.10 E-value=49 Score=34.86 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=16.8
Q ss_pred cEEEEcCCCccHHHHHHHHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEYAFALAT 440 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~aI~~~l 440 (1379)
-.++.+|+|||||.+.. ||..++
T Consensus 25 ~~~I~G~NgsGKStil~-ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLD-AILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHHHH-HHHHHH
T ss_pred eEEEEcCCCCCHHHHHH-HHHHHh
Confidence 56889999999998754 444443
No 487
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=23.09 E-value=50 Score=34.09 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=15.2
Q ss_pred cEEEEcCCCccHHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAEY 434 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae~ 434 (1379)
.+.+.++.|||||.++..
T Consensus 4 ~i~i~G~~GsGKst~~~~ 21 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARR 21 (208)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999998653
No 488
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=23.08 E-value=64 Score=36.92 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=22.7
Q ss_pred HCCCcEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEe
Q 039491 413 ENGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYT 449 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae~aI~~~l~~~~raIyl 449 (1379)
..|..+.+.+++|||||...-..+-.....+.++.+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~ 89 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVL 89 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEE
Confidence 3566788999999999986433322222334445444
No 489
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=22.84 E-value=29 Score=38.37 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=16.7
Q ss_pred HCCCcEEEEcCCCccHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVV 431 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlv 431 (1379)
..|+-+.+.+|.|||||+.
T Consensus 30 ~~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4688899999999999985
No 490
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=22.73 E-value=46 Score=37.76 Aligned_cols=21 Identities=24% Similarity=0.140 Sum_probs=16.8
Q ss_pred HCCCcEEEEcCCCccHHHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlvae 433 (1379)
..|.-+.|++|+|||||+.+-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~ 108 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTAR 108 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHH
Confidence 345678899999999998754
No 491
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=22.72 E-value=39 Score=36.29 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=16.7
Q ss_pred HCCCcEEEEcCCCccHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVV 431 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlv 431 (1379)
..|+-+.+.+|.|||||+.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp ETTCEEEEEECTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4688899999999999975
No 492
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=22.70 E-value=61 Score=35.83 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=21.4
Q ss_pred CcEEEEc-CCCccHHHHHHHHHHHHHhcCCcEEEe
Q 039491 416 DSVFVAA-HTSAGKTVVAEYAFALATKHCTRAVYT 449 (1379)
Q Consensus 416 ~sVlV~A-pTGSGKTlvae~aI~~~l~~~~raIyl 449 (1379)
+.++|++ ..|.|||+++.-........|.|++++
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 4455654 478999987544333333567788775
No 493
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=22.32 E-value=30 Score=38.16 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=16.8
Q ss_pred HCCCcEEEEcCCCccHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVV 431 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlv 431 (1379)
..|+-+.+.+|.|||||+.
T Consensus 39 ~~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCcEEEEECCCCCCHHHH
Confidence 4688899999999999985
No 494
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=22.30 E-value=40 Score=37.35 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=16.8
Q ss_pred HCCCcEEEEcCCCccHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVV 431 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlv 431 (1379)
..|+-+.+.+|.|||||+.
T Consensus 35 ~~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp ETTCEEEEECCTTSCHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 4688899999999999985
No 495
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=22.28 E-value=30 Score=38.44 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=16.8
Q ss_pred HCCCcEEEEcCCCccHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVV 431 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlv 431 (1379)
..|+-+.+.+|.|||||+.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4688899999999999985
No 496
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=22.25 E-value=35 Score=37.80 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=14.7
Q ss_pred cEEEEcCCCccHHHHHH
Q 039491 417 SVFVAAHTSAGKTVVAE 433 (1379)
Q Consensus 417 sVlV~ApTGSGKTlvae 433 (1379)
-++++++.|||||.++.
T Consensus 4 ~I~l~G~~GsGKST~a~ 20 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAR 20 (301)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998754
No 497
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=22.24 E-value=30 Score=38.26 Aligned_cols=19 Identities=32% Similarity=0.695 Sum_probs=16.7
Q ss_pred HCCCcEEEEcCCCccHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVV 431 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlv 431 (1379)
..|+-+.+.+|.|||||+.
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 4688899999999999985
No 498
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=22.22 E-value=40 Score=36.99 Aligned_cols=19 Identities=21% Similarity=0.541 Sum_probs=16.9
Q ss_pred HCCCcEEEEcCCCccHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVV 431 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlv 431 (1379)
..|+-+.+.+|.|||||+.
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred eCCCEEEEECCCCCCHHHH
Confidence 4688899999999999985
No 499
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=22.18 E-value=41 Score=36.55 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=16.8
Q ss_pred HCCCcEEEEcCCCccHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVV 431 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlv 431 (1379)
..|+-+.+.+|.|||||+.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4688899999999999985
No 500
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=22.17 E-value=37 Score=37.62 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=16.9
Q ss_pred HCCCcEEEEcCCCccHHHH
Q 039491 413 ENGDSVFVAAHTSAGKTVV 431 (1379)
Q Consensus 413 ~~g~sVlV~ApTGSGKTlv 431 (1379)
..|+-+.+.+|.|||||+.
T Consensus 44 ~~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4688899999999999985
Done!