Your job contains 1 sequence.
>039493
MLSELGRRPMIGNSEGSFGDDFEKEIGMLLREQRRQETDDCERELNLYRSGSAPPTVEGS
LSAVGGLFGAADNNMAFSELSRAKAGNNNGFSSEEELRSDPAYLSYYYSNVNLNPRLPPP
LLSKEDWRFAQRLRGESSMLGELDDRRKVNGGAGNSGSGGNRSLFSMPPGFDTRKQQSES
AQDKLRSSADWGGDGLIGLSGIGLGSKQKSLAEIFQDDLGRATPVTGNPSRPASRNAFDE
SIESISSAEAELANLRHDLKSGANVQGTSAVQTIGPPSSYTYAAVLGSSLSRSTTPDPQL
VARAPSPCPTAIGSGRVGASEKRGMTSSNSFSGVSSGINESADLVAALSGMNLSTNGVLN
EDNQLPSQIEQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNLQMPPGLQSAKMSYSDL
AKSNGGGLDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGGGLNSQYQNVDNLP
NYGLGGYALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVLGGGFASGQNLS
ATSESHNLNRAGSQMGGGALQFPFVDPVYLQYLRSSEYAAQLAALNDPSVDRNFLGNSYM
NLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYPGSPLANPVIP
NSPVGPGSPIRHNDPNLRFAGMRNLAGGVMGPWHLDASMDESFGSSLLEEFKSNKTKCFE
LSEIAGHVVEFRYAMLLAHLMLHFSAVLN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 039493
(749 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2043187 - symbol:PUM2 "pumilio 2" species:3702... 768 1.5e-127 2
TAIR|locus:2043182 - symbol:PUM1 "pumilio 1" species:3702... 745 8.2e-124 3
TAIR|locus:2043047 - symbol:PUM3 "pumilio 3" species:3702... 724 9.3e-121 3
TAIR|locus:2076324 - symbol:PUM4 "pumilio 4" species:3702... 275 3.1e-20 1
TAIR|locus:2087560 - symbol:PUM5 "pumilio 5" species:3702... 162 6.2e-13 3
TAIR|locus:2117552 - symbol:PUM6 "pumilio 6" species:3702... 86 0.00028 4
>TAIR|locus:2043187 [details] [associations]
symbol:PUM2 "pumilio 2" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS;IDA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0003729 "mRNA binding"
evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005829 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003730 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 ProtClustDB:CLSN2717398 InterPro:IPR012940
Pfam:PF07990 EMBL:AY096653 EMBL:AK226635 IPI:IPI00539996 PIR:E84693
RefSeq:NP_001189630.1 RefSeq:NP_180482.1 UniGene:At.28148
UniGene:At.48528 ProteinModelPortal:Q9ZW06 SMR:Q9ZW06 STRING:Q9ZW06
PaxDb:Q9ZW06 PRIDE:Q9ZW06 ProMEX:Q9ZW06 EnsemblPlants:AT2G29190.1
EnsemblPlants:AT2G29190.2 GeneID:817468 KEGG:ath:AT2G29190
TAIR:At2g29190 InParanoid:Q9ZW06 OMA:LAANCED PhylomeDB:Q9ZW06
Genevestigator:Q9ZW06 Uniprot:Q9ZW06
Length = 972
Score = 768 (275.4 bits), Expect = 1.5e-127, Sum P(2) = 1.5e-127
Identities = 179/373 (47%), Positives = 234/373 (62%)
Query: 364 QLPSQIEQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNL-QMPPGLQSAKMSYSDLAK 422
++ S +++ N + G+ + + M S SG L + Q + + +
Sbjct: 290 RVSSNDKRNTSNQSPFNGGLNESSDLVNALSGMNLSGSGGLDERGQAEQDVEKVRNYMFG 349
Query: 423 SNGGGLDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGGGLNSQYQNVDNLPNY 482
GG ++N ++ + QK NS L+G+ ST N GGG+ +QYQ++D+ PNY
Sbjct: 350 LQGGHNEVNQHGF-PNKSDQAQKATGLLRNSQLRGAQGSTYNDGGGVATQYQHLDS-PNY 407
Query: 483 GLGGYALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVLGGGF-ASGQNLSA 541
L Y L+P++AS+MA QLG N P+YEN +AASAM GMDSR+ GGG+ +SGQNLS
Sbjct: 408 CLNNYGLNPAVASMMANQLGTNNYSPVYENASAASAMGFSGMDSRLHGGGYVSSGQNLS- 466
Query: 542 TSESHNLNRAGSQM-GGGA-LQFPFVDPVYLQYLRSSEYAAQLAALNDPSVDRNFLGNSY 599
ES NL R ++M GGG LQ DP+Y QY A L LNDPS+D NF+GNSY
Sbjct: 467 --ESRNLGRFSNRMMGGGTGLQSHMADPMYHQY------ADSLDLLNDPSMDVNFMGNSY 518
Query: 600 MNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYPGSPLANPVI 659
MN+LELQ+AYLG QKSQYG P KS N H G+P FG SYPGSPLA+ ++
Sbjct: 519 MNMLELQRAYLGA----QKSQYGVPY--KSGSPNSHTDYGSPTFG---SYPGSPLAHHLL 569
Query: 660 PNSPVGPGSPIRHNDPNLRF-AGMRNLAGGVMGPWHLDASMDESFGSSLLEEFKSNKTKC 718
PNS V P SP+R + N+R+ + RN AGGVMG WH+DAS+DE FGSS+LEEFKSNKT+
Sbjct: 570 PNSLVSPCSPMRRGEVNMRYPSATRNYAGGVMGSWHMDASLDEGFGSSMLEEFKSNKTRG 629
Query: 719 FELSEIAGHVVEF 731
FEL+EIAGHVVEF
Sbjct: 630 FELAEIAGHVVEF 642
Score = 505 (182.8 bits), Expect = 1.5e-127, Sum P(2) = 1.5e-127
Identities = 119/242 (49%), Positives = 137/242 (56%)
Query: 1 MLSELGRRPMI-GNSEGSFGDDFEKEIGMLLREQ-RRQ-ETDDCERELNLYRSGSAPPTV 57
M+ ELGRRPM GN + SFGDD+EKEIG+LL EQ RRQ E D+ ERELNLYRSGSAPPTV
Sbjct: 1 MIPELGRRPMHRGNEDSSFGDDYEKEIGVLLGEQQRRQVEADELERELNLYRSGSAPPTV 60
Query: 58 EGSLSAVGGLFGAADNNMAFSELSRAKAGNNNGFSSEEELRSDPAXXXXXXXXXXXXXXX 117
+GS+SA GGLF F E GN G +EE R DPA
Sbjct: 61 DGSVSAAGGLFSGG-GGAPFLEFGGGNKGNGFG-GDDEEFRKDPAYLSYYYANMKLNPRL 118
Query: 118 XXXXXSKEDWRFAQRLRGESSMLGELDDRRKVXXXXXXXXXXXXXXLFSMPPGFDTRKQQ 177
S+ED R AQRL+G S++LG + DRRKV LFSMPPGFD RKQ
Sbjct: 119 PPPLMSREDLRVAQRLKGSSNVLGGVGDRRKVNDSQS---------LFSMPPGFDQRKQH 169
Query: 178 SESAQDKLRSSADWXXXXXXXXXXXXXXXKQKSLAEIFQDDLGRATPVTGNPSRPASRNA 237
+ SS++W KQKS A+IFQ D+G PVT PSRPASRN
Sbjct: 170 EFEVEKTSASSSEWDANGLIGLPGLGIGGKQKSFADIFQADMGHGHPVTKQPSRPASRNT 229
Query: 238 FD 239
FD
Sbjct: 230 FD 231
Score = 346 (126.9 bits), Expect = 3.7e-81, Sum P(2) = 3.7e-81
Identities = 109/290 (37%), Positives = 146/290 (50%)
Query: 269 SAVQTIGPPSSYTYAAVLGSSLSRSTTPDPQLVARAPSPCPTAIGSGRVGASEKRGMTXX 328
SA Q IG PS Y+YAAVLGSSLSR+ TPDPQ +AR PSPC T IGSGRV +++KR +
Sbjct: 243 SASQGIGAPSPYSYAAVLGSSLSRNGTPDPQAIARVPSPCLTPIGSGRVSSNDKRNTSNQ 302
Query: 329 XXXXXXXXGINESADLVAALSGMNLSTNGVLNEDNQLPSQIEQDIENHQNYLHGIQGGQN 388
G+NES+DLV ALSGMNLS +G L+E Q EQD+E +NY+ G+QGG N
Sbjct: 303 SPFNG---GLNESSDLVNALSGMNLSGSGGLDERGQA----EQDVEKVRNYMFGLQGGHN 355
Query: 389 HIKQNKYMKKSDSGNLQMPPGL-QSAKMSYSDLAKSNGGG--------LDLNNASL---- 435
+ Q+ + KSD Q GL +++++ + + N GG LD N L
Sbjct: 356 EVNQHGFPNKSDQA--QKATGLLRNSQLRGAQGSTYNDGGGVATQYQHLDSPNYCLNNYG 413
Query: 436 LTDRRVELQKPAVPTSNS---YLKGSPTSTL--NG------GGGLNSQYQNVDNLPNYGL 484
L + + T+N Y S S + +G GGG S QN+ N G
Sbjct: 414 LNPAVASMMANQLGTNNYSPVYENASAASAMGFSGMDSRLHGGGYVSSGQNLSESRNLG- 472
Query: 485 GGYALSPSMASVMAGQLGAGNLPPLYENVA-AASAMAVPGMDSRVLGGGF 533
S M G L + P+Y A + + P MD +G +
Sbjct: 473 ---RFSNRMMGGGTG-LQSHMADPMYHQYADSLDLLNDPSMDVNFMGNSY 518
>TAIR|locus:2043182 [details] [associations]
symbol:PUM1 "pumilio 1" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
IPI:IPI00536716 PIR:F84693 RefSeq:NP_180483.1 UniGene:At.38509
ProteinModelPortal:Q9ZW07 SMR:Q9ZW07 STRING:Q9ZW07 PaxDb:Q9ZW07
PRIDE:Q9ZW07 EnsemblPlants:AT2G29200.1 GeneID:817469
KEGG:ath:AT2G29200 TAIR:At2g29200 HOGENOM:HOG000238460
InParanoid:Q9ZW07 OMA:DQAHKAT PhylomeDB:Q9ZW07
ProtClustDB:CLSN2717398 Genevestigator:Q9ZW07 InterPro:IPR012940
Pfam:PF07990 Uniprot:Q9ZW07
Length = 968
Score = 745 (267.3 bits), Expect = 8.2e-124, Sum P(3) = 8.2e-124
Identities = 179/369 (48%), Positives = 231/369 (62%)
Query: 375 NHQNYLHGIQGGQNHIKQNKYMKKSDSG-NLQMPPGLQSAKMSYSDLAKSNG------GG 427
++Q+ +G+ G N ++ + + SG NL GL + D+ K GG
Sbjct: 292 SNQSPFNGVTSGLN---ESSDLVNALSGLNLSCSVGLDDRSQAEQDVEKVRNYMFGLQGG 348
Query: 428 LDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGGGLNSQYQNVDNLPNYGLGGY 487
+ N ++ + K NS L+G S NGG GL + YQ +D+ PNY L Y
Sbjct: 349 HNEVNQHEFPNKSDQAHKATGSLRNSQLRGPHGSAYNGGVGLANPYQQLDS-PNYCLNNY 407
Query: 488 ALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVLGGGF-ASGQNLSATSESH 546
AL+P++AS+MA QLG N P+Y+NV SA+ GMDSR G GF +SGQNLS ES
Sbjct: 408 ALNPAVASMMANQLGNNNFAPMYDNV---SALGFSGMDSRHHGRGFVSSGQNLS---ESR 461
Query: 547 NLNRAGSQM-GGGA-LQFPFVDPVYLQYLRSSEYAAQLAALNDPSVDRNFLG-NSYMNLL 603
NL R ++M GGGA LQ VDP+Y ++YA L LNDPS+DRNF+G +SYM++L
Sbjct: 462 NLGRFSNRMMGGGAGLQSHMVDPMY------NQYADSLDLLNDPSMDRNFMGGSSYMDML 515
Query: 604 ELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYPGSPLANPVIPNSP 663
ELQ+AYLG QKSQYG P KS N H Y G+P FG MSYPGSPLA+ +PNS
Sbjct: 516 ELQRAYLGA----QKSQYGVPY--KSGSPNSHSYYGSPTFGSNMSYPGSPLAHHGMPNSL 569
Query: 664 VGPGSPIRHNDPNLRF-AGMRNLAGGVMGPWHLDASMDESFGSSLLEEFKSNKTKCFELS 722
+ P SP+R ++ N+RF + RN +GG+MG WH+DAS DE FGSS+LEEFKSNKT+ FELS
Sbjct: 570 MSPYSPMRRDEVNMRFPSATRNYSGGLMGSWHMDASFDEGFGSSMLEEFKSNKTRGFELS 629
Query: 723 EIAGHVVEF 731
EIAGHVVEF
Sbjct: 630 EIAGHVVEF 638
Score = 365 (133.5 bits), Expect = 8.2e-124, Sum P(3) = 8.2e-124
Identities = 88/185 (47%), Positives = 108/185 (58%)
Query: 1 MLSELGRRPMI-GNSEGSFGDDFEKEIGMLLREQ-RRQ-ETDDCERELNLYRSGSAPPTV 57
M+ ELGRRPM GN + SFGDD+EKEIG+LL EQ RRQ E D+ ERELNL+RSGSAPPTV
Sbjct: 1 MIPELGRRPMHRGNEDSSFGDDYEKEIGVLLGEQQRRQVEADELERELNLFRSGSAPPTV 60
Query: 58 EGSLSAVGGLFGAADNNMAFSELSRAKAGNNNGFSSEEELRSDPAXXXXXXXXXXXXXXX 117
+GS+SA GGLF F E GN G +EE R DPA
Sbjct: 61 DGSVSAAGGLFSGG-GGAPFLEFGGVNKGNGFG-GDDEEFRKDPAYLSYYYANMKLNPRL 118
Query: 118 XXXXXSKEDWRFAQRLRGESSMLGELDDRRKVXXXXXXXXXXXXXXLFSMPPGFDTRKQQ 177
S+ED R AQRL+G +++LG + DRRKV LFSMPPGF+ K
Sbjct: 119 PPPLMSREDLRVAQRLKGSNNVLGGVGDRRKVNDNRS---------LFSMPPGFEGEKTG 169
Query: 178 SESAQ 182
+ +++
Sbjct: 170 ASASE 174
Score = 357 (130.7 bits), Expect = 7.1e-73, Sum P(3) = 7.1e-73
Identities = 128/403 (31%), Positives = 189/403 (46%)
Query: 269 SAVQTIGPPSSYTYAAVLGSSLSRSTTPDPQLVARAPSPCPTAIGSGRVGASEKRGMTXX 328
SA Q IG PS Y+YAAVLGSSLSR+ TPDPQ +AR PSPC T IGSGR+ +++KR +
Sbjct: 235 SASQGIGAPSPYSYAAVLGSSLSRNGTPDPQAIARVPSPCLTPIGSGRMSSNDKRNTSNQ 294
Query: 329 XXXXXXXXGINESADLVAALSGMNLSTNGVLNEDNQLPSQIEQDIENHQNYLHGIQGGQN 388
G+NES+DLV ALSG+NLS + L++ SQ EQD+E +NY+ G+QGG N
Sbjct: 295 SPFNGVTSGLNESSDLVNALSGLNLSCSVGLDDR----SQAEQDVEKVRNYMFGLQGGHN 350
Query: 389 HIKQNKYMKKSDSGNLQMPPGLQSAKMSYSDLAKSNGG-GL-------D-----LNN--- 432
+ Q+++ KSD + + L+++++ + NGG GL D LNN
Sbjct: 351 EVNQHEFPNKSDQAH-KATGSLRNSQLRGPHGSAYNGGVGLANPYQQLDSPNYCLNNYAL 409
Query: 433 ----ASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGGGLNSQYQNVDNLPNYGLGGYA 488
AS++ ++ + + S L S + + G G S QN+ N G
Sbjct: 410 NPAVASMMANQLGNNNFAPMYDNVSALGFSGMDSRHHGRGFVSSGQNLSESRNLG----R 465
Query: 489 LSPSMASVMAGQLGAGNLPPLYENVA-AASAMAVPGMDSRVLGGGFASGQNLSATSESHN 547
S M AG L + + P+Y A + + P MD +GG S+ +
Sbjct: 466 FSNRMMGGGAG-LQSHMVDPMYNQYADSLDLLNDPSMDRNFMGG--------SSYMDMLE 516
Query: 548 LNRA--GSQMGGGALQFPFVDPVYLQYLRSSEYAAQLAALNDPSVDRNFLGNSYMNLLE- 604
L RA G+Q + + P Y S + + ++ P + NS M+
Sbjct: 517 LQRAYLGAQKSQYGVPYKSGSPNSHSYYGSPTFGSNMSYPGSPLAHHG-MPNSLMSPYSP 575
Query: 605 LQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGM 647
+++ + + Y G L GS H GFG M
Sbjct: 576 MRRDEVNMRFPSATRNYSGGL----MGSWHMDASFDEGFGSSM 614
Score = 142 (55.0 bits), Expect = 8.2e-124, Sum P(3) = 8.2e-124
Identities = 33/76 (43%), Positives = 40/76 (52%)
Query: 164 LFSMPPGFDTRKQQSESAQDKLRSSADWXXXXXXXXXXXXXXXKQKSLAEIFQDDLGRAT 223
LFSMPPGF+ K + S+++W KQKS A+IFQ D+G
Sbjct: 156 LFSMPPGFEGEKTGA--------SASEWDANGLIGLPGLGLGGKQKSFADIFQADMGHGH 207
Query: 224 PVTGNPSRPASRNAFD 239
PV PSRPASRN FD
Sbjct: 208 PVAQQPSRPASRNTFD 223
Score = 37 (18.1 bits), Expect = 9.6e-76, Sum P(2) = 9.6e-76
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 11 IGNSEGSFGDDFEKEIG 27
+G + SF D F+ ++G
Sbjct: 188 LGGKQKSFADIFQADMG 204
>TAIR|locus:2043047 [details] [associations]
symbol:PUM3 "pumilio 3" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005886 GO:GO:0005737
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
ProtClustDB:CLSN2717398 InterPro:IPR012940 Pfam:PF07990
IPI:IPI00542656 PIR:A84693 RefSeq:NP_180478.1 UniGene:At.46280
ProteinModelPortal:Q9ZW02 SMR:Q9ZW02 PaxDb:Q9ZW02 PRIDE:Q9ZW02
EnsemblPlants:AT2G29140.1 GeneID:817463 KEGG:ath:AT2G29140
TAIR:At2g29140 InParanoid:Q9ZW02 OMA:MYENASA PhylomeDB:Q9ZW02
Genevestigator:Q9ZW02 Uniprot:Q9ZW02
Length = 964
Score = 724 (259.9 bits), Expect = 9.3e-121, Sum P(3) = 9.3e-121
Identities = 171/367 (46%), Positives = 223/367 (60%)
Query: 375 NHQNYLHGIQGGQNHIKQNKYMKKSDSG-NLQMPPGLQSAKMSYSDLAKSNGGGLDLNNA 433
++Q+ +G+ G N ++ + + SG NL GL + D+ K L +
Sbjct: 288 SNQSPFNGVTSGLN---ESSDLVNALSGLNLSGTGGLDERGQAEQDVEKVRNYMFGLQDG 344
Query: 434 SLLTD-----RRVELQKPAVPTSNSYLKGSPTSTLNGGGGLNSQYQNVDNLPNYGLGGYA 488
+ R + + NS ++GS S N G G+ + YQ+ D+ PNY YA
Sbjct: 345 HNEVNPHGFPNRSDQARGTASCRNSQMRGSQGSAYNSGSGVANPYQHHDS-PNY----YA 399
Query: 489 LSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVLGGGF-ASGQNLSATSESHN 547
L+P++AS+MA QLG N P+YEN A++ + MDSR+ GG F +SGQNLS ES N
Sbjct: 400 LNPAVASMMANQLGTNNYSPMYEN--ASATLGYSAMDSRLHGGSFVSSGQNLS---ESRN 454
Query: 548 LNRAGSQMGGGALQFP--FVDPVYLQYLRSSEYAAQLAALNDPSVDRNFLGNSYMNLLEL 605
+ R G++M G P DP+Y QY R SE A LNDPS+DRN+ GNSYMN+LE+
Sbjct: 455 IGRVGNRMMEGGTGHPSHLADPMYHQYARFSENADSFDLLNDPSMDRNY-GNSYMNMLEI 513
Query: 606 QKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYPGSPLANPVIPNSPVG 665
Q+AYLG QKSQYG P KS N H Y G+P FG MSYPGSPLA+ +PNS +
Sbjct: 514 QRAYLG----SQKSQYGLPY--KSGSPNSHSYYGSPTFGSNMSYPGSPLAHHGMPNSLMS 567
Query: 666 PGSPIRHNDPNLRF-AGMRNLAGGVMGPWHLDASMDESFGSSLLEEFKSNKTKCFELSEI 724
P SP+R + N+R+ A RN GGVMG WH+DAS+DE FGSS+LEEFKSNKT+ FELSEI
Sbjct: 568 PYSPMRRGEVNMRYPAATRNYTGGVMGSWHMDASLDEGFGSSMLEEFKSNKTRGFELSEI 627
Query: 725 AGHVVEF 731
AGHVVEF
Sbjct: 628 AGHVVEF 634
Score = 375 (137.1 bits), Expect = 9.3e-121, Sum P(3) = 9.3e-121
Identities = 90/185 (48%), Positives = 109/185 (58%)
Query: 1 MLSELGRRPMI-GNSEGSFGDDFEKEIGMLLREQ-RRQ-ETDDCERELNLYRSGSAPPTV 57
M+ ELGRRPM GN + SFGDD+EKEIG+LL EQ RRQ E D+ ERELNLYRSGSAPPTV
Sbjct: 2 MIPELGRRPMHRGNEDSSFGDDYEKEIGVLLGEQQRRQVEADELERELNLYRSGSAPPTV 61
Query: 58 EGSLSAVGGLFGAADNNMAFSELSRAKAGNNNGFSSEEELRSDPAXXXXXXXXXXXXXXX 117
+GSLSA GGLF +F E GN G +EE R DPA
Sbjct: 62 DGSLSAAGGLFSGG-GGASFLEFGGVNKGNGFG-GDDEEFRKDPAYLSYYYANMKLNPRL 119
Query: 118 XXXXXSKEDWRFAQRLRGESSMLGELDDRRKVXXXXXXXXXXXXXXLFSMPPGFDTRKQQ 177
S+ED R AQRL+G +++LG + DRRKV LFSMPPGF+ K
Sbjct: 120 PPPLMSREDLRVAQRLKGSNNVLGGVGDRRKVNDSRS---------LFSMPPGFEAGKPG 170
Query: 178 SESAQ 182
+ +++
Sbjct: 171 ASASE 175
Score = 330 (121.2 bits), Expect = 2.3e-69, Sum P(3) = 2.3e-69
Identities = 123/381 (32%), Positives = 173/381 (45%)
Query: 269 SAVQTIGPPSSYTYAAVLGSSLSRSTTPDPQLVARAPSPCPTAIGSGRVGASEKRGMTXX 328
SA Q IG PS Y YAAVLGSSLSR+ TPDPQ +AR PSPC T IGSGRV +++KR +
Sbjct: 231 SASQGIGAPSPYCYAAVLGSSLSRNGTPDPQGIARVPSPCLTPIGSGRVSSNDKRNTSNQ 290
Query: 329 XXXXXXXXGINESADLVAALSGMNLSTNGVLNEDNQLPSQIEQDIENHQNYLHGIQGGQN 388
G+NES+DLV ALSG+NLS G L+E Q EQD+E +NY+ G+Q G N
Sbjct: 291 SPFNGVTSGLNESSDLVNALSGLNLSGTGGLDERGQA----EQDVEKVRNYMFGLQDGHN 346
Query: 389 HIKQNKYMKKSDSG-------NLQMPPGLQSAKMSYSDLAKS-------NGGGLDLNNAS 434
+ + + +SD N QM SA S S +A N L+ AS
Sbjct: 347 EVNPHGFPNRSDQARGTASCRNSQMRGSQGSAYNSGSGVANPYQHHDSPNYYALNPAVAS 406
Query: 435 LLTDRR-VELQKPAVPTSNSYLKGSPTSTLNGGGGLNSQYQNVDNLPNYGLGGYALSPSM 493
++ ++ P +++ L S + GG S QN+ N G G +
Sbjct: 407 MMANQLGTNNYSPMYENASATLGYSAMDSRLHGGSFVSSGQNLSESRNIGRVGNRM---- 462
Query: 494 ASVMAGQLG-AGNLP-PLYENVAAASAMAVPGMDSRVLGGGFASGQNL-SATSESHNLNR 550
M G G +L P+Y A S A DS L + +N ++ + R
Sbjct: 463 ---MEGGTGHPSHLADPMYHQYARFSENA----DSFDLLNDPSMDRNYGNSYMNMLEIQR 515
Query: 551 A--GSQMGGGALQFPFVDPVYLQYLRSSEYAAQLAALNDPSVDRNFLGNSYMNLLE-LQK 607
A GSQ L + P Y S + + ++ P + NS M+ +++
Sbjct: 516 AYLGSQKSQYGLPYKSGSPNSHSYYGSPTFGSNMSYPGSPLAHHG-MPNSLMSPYSPMRR 574
Query: 608 AYLGVLLSPQKSQY-GGPLGS 627
+ + Y GG +GS
Sbjct: 575 GEVNMRYPAATRNYTGGVMGS 595
Score = 124 (48.7 bits), Expect = 9.3e-121, Sum P(3) = 9.3e-121
Identities = 33/76 (43%), Positives = 40/76 (52%)
Query: 164 LFSMPPGFDTRKQQSESAQDKLRSSADWXXXXXXXXXXXXXXXKQKSLAEIFQDDLGRAT 223
LFSMPPGF+ K + S+++W KQKS A+IFQ D+G
Sbjct: 157 LFSMPPGFEAGKPGA--------SASEWDANGLIGLGLGG---KQKSFADIFQADMGH-- 203
Query: 224 PVTGNPSRPASRNAFD 239
PV PSRPASRN FD
Sbjct: 204 PVVQQPSRPASRNTFD 219
Score = 39 (18.8 bits), Expect = 9.7e-74, Sum P(2) = 9.7e-74
Identities = 10/53 (18%), Positives = 24/53 (45%)
Query: 11 IGNSEGSFGDDFEKEIGMLLREQRRQETDDCERELNLYRSGSAPPTVEGSLSA 63
+G + SF D F+ ++G + +Q + + N+ + + P+ + A
Sbjct: 186 LGGKQKSFADIFQADMGHPVVQQPSRPASRNTFDENVDSNNNLSPSASQGIGA 238
>TAIR|locus:2076324 [details] [associations]
symbol:PUM4 "pumilio 4" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729 EMBL:AC009400
eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460 InterPro:IPR012940
Pfam:PF07990 EMBL:AK117911 EMBL:BT005311 IPI:IPI00525853
RefSeq:NP_187647.2 UniGene:At.27627 UniGene:At.48643
ProteinModelPortal:Q9SS47 SMR:Q9SS47 PaxDb:Q9SS47 PRIDE:Q9SS47
EnsemblPlants:AT3G10360.1 GeneID:820198 KEGG:ath:AT3G10360
TAIR:At3g10360 InParanoid:Q9SS47 OMA:FKNNKTR PhylomeDB:Q9SS47
Genevestigator:Q9SS47 Uniprot:Q9SS47
Length = 1003
Score = 275 (101.9 bits), Expect = 3.1e-20, P = 3.1e-20
Identities = 150/644 (23%), Positives = 256/644 (39%)
Query: 20 DDFEKEIGMLLREQRRQET--DDCERELNLYRSGSAPPTVEGSLSAVGGLFGAADNNMAF 77
D F++E+ LL++ R Q++ + ER+++++RSGSAPPTVEG L A+ + +NN
Sbjct: 26 DRFQRELESLLQQHRNQQSFGRERERDIDVHRSGSAPPTVEGLLRAMDNQY-LNNNNSDH 84
Query: 78 SELSRAKA-GNNNGFS--SEEELRSDPAXXXXXXXXXXXXXXXXXXXXSKEDWRFAQRLR 134
++ + +NG S++ELR P S+EDWR AQR
Sbjct: 85 RDVGNISSITTSNGVELLSDDELRWHPEYLSYYYSNEHSNPRLPPPLLSREDWRVAQRFH 144
Query: 135 GESSMLGELDDRRKVXXXXXXXXXXXXXXLFSMPPG----------FDTRKQQSESAQDK 184
S+ + + RK LFS+ PG + R ++ K
Sbjct: 145 NSESVFDPVGEWRK-----KTVEVDNSSSLFSVQPGVPVEQAENDLMELRNAVAQGRSQK 199
Query: 185 LRSSADWXXXXXXXXXXXXXXXKQKSLAEIFQDDLGRATPVTGNPSRPASRNAFDXXXXX 244
++ ++KS A+I Q+ L R + SRPAS N F
Sbjct: 200 VQRLDQGREDLIGLSGYSGLGPRRKSFADILQEGLERDAALGSQLSRPASCNTFRDMKDA 259
Query: 245 XXXXXXXLANLRHDLKSGANVQGTSAVQTIGPPSSYTYAAVLGSSLSRSTTPDPQLVARA 304
L ++ T+ P++ + + S + R+ TPD LV R+
Sbjct: 260 AVLSNFSAGGFDSPLAFHDSLHSTAK----NSPNTML-GSTMSSPVPRNRTPDSHLVGRS 314
Query: 305 PSPCPTAIGSGRVGASEKRGMTXXXXXXXXXXGINESADLVAALSGMNLSTNGVLNEDNQ 364
+ IG+ RVG EK+ +AD+ LS +N+S + E N
Sbjct: 315 TASGLPPIGT-RVGPVEKKNTFGTAIQNCESY---TAADVADTLSRLNMSEMSQVKE-NH 369
Query: 365 LPSQIEQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNLQMPPGLQSAKMSYSDLAKSN 424
+ SQ++ ++EN + + I G H K +++ ++ + L SA +Y ++
Sbjct: 370 MQSQLQVELENQSDVMRYIPNG--H---KKALRQQNTAETK--DHLFSA--NYGGMS--- 417
Query: 425 GGGLDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGG--GLNSQYQNVDNLPNY 482
G G L +++ + +V + K +++ Y S S L G +N + N++
Sbjct: 418 GYGASLGASTVGSHGQVNIPKRTSSSASLY-STSDHSRLGSVGLSDVNIRNGNINGTDFS 476
Query: 483 GLGGYALSP---SMA---SVMAGQL-GAGNLPPLYENV-AAASAMAVPGMDSRVLGGGFA 534
GGY S+A S L G G+ L + AS + P MD +
Sbjct: 477 TAGGYMAKNKLNSLAEHYSAEGSHLTGDGDRQSLNRLINQVASELHSPVMDPHY--SQYL 534
Query: 535 SGQNLSATSESHNL--NRAGSQMGGGALQFPFVDPVYLQYLRSSEYAAQLAALNDPSVDR 592
+ +A H+L N G+ G A ++ + + + AA PS D
Sbjct: 535 HTASSTAAPIDHSLIRNNFGTSNGDTANEYLAMLLAQNRQQLGNLNAANSRFFESPSYDL 594
Query: 593 N--FLGNSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNH 634
+LGN + + + + + +S S P G GS+H
Sbjct: 595 GNMYLGNHLPSPSKNSRNFQNMRMSQSASMMKVPFGGLQ-GSSH 637
Score = 145 (56.1 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 50/161 (31%), Positives = 83/161 (51%)
Query: 576 SEYAAQLAALNDPSVDRNFLGNSY-MNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNH 634
S+Y ++ P +D + + N++ + + YL +LL+ + Q LG+ ++ ++
Sbjct: 531 SQYLHTASSTAAP-IDHSLIRNNFGTSNGDTANEYLAMLLAQNRQQ----LGNLNAANSR 585
Query: 635 HGYCGTPGFGLGMSYPGSPLANPVIPNSPVGPGSPIRHNDPNLRF---AGMRNLA-GGVM 690
+ +P + LG Y G+ L +P NS N N+R A M + GG+
Sbjct: 586 --FFESPSYDLGNMYLGNHLPSPS-KNS---------RNFQNMRMSQSASMMKVPFGGLQ 633
Query: 691 GPWHLDASMDESFGSSLLEEFKSNKTKCFELSEIAGHVVEF 731
G H+D + + +SLLE FK+NKT+ ELSEI GHV+EF
Sbjct: 634 GSSHVD--IGSTAEASLLEGFKNNKTRSLELSEIVGHVIEF 672
>TAIR|locus:2087560 [details] [associations]
symbol:PUM5 "pumilio 5" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005773 "vacuole" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005829
GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AP000383 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
EMBL:AK228410 EMBL:BX824276 IPI:IPI00527056 IPI:IPI00972845
RefSeq:NP_188660.3 UniGene:At.38266 ProteinModelPortal:Q9LJX4
SMR:Q9LJX4 STRING:Q9LJX4 PaxDb:Q9LJX4 PRIDE:Q9LJX4
EnsemblPlants:AT3G20250.1 GeneID:821569 KEGG:ath:AT3G20250
TAIR:At3g20250 InParanoid:Q9LJX4 OMA:QHKYASN PhylomeDB:Q9LJX4
Genevestigator:Q9LJX4 Uniprot:Q9LJX4
Length = 961
Score = 162 (62.1 bits), Expect = 6.2e-13, Sum P(3) = 6.2e-13
Identities = 65/205 (31%), Positives = 90/205 (43%)
Query: 538 NLSATSESHNLNRAGSQMGGGALQFP-FVDPVYLQYLRSSE---YAAQLAALNDPSVDRN 593
++S+TS +N R + P VDP LQY + ++ YA + D ++
Sbjct: 443 DISSTSSGYNNPRLLPGVSSSGQNIPSLVDPFQLQYFQQAQVDAYAPPFQSSTDSFGQKD 502
Query: 594 FLGNSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYPGSP 653
YM E L SP YG L S N+ + PG + YPGSP
Sbjct: 503 QQAVGYMANHE-------PLNSPLSPGYG--LQSPRHMGNY--FAVPPGVRVMPQYPGSP 551
Query: 654 LANPVIPNSPVGPGSPI--RHNDPNLRFAGMRNLAGGVMGPWHLD---AS--MDESFGSS 706
LA+PV+P+SPVG R ++ G G G W + AS +D+ S
Sbjct: 552 LASPVMPSSPVGGMMSHFGRRSETRYHQQGPSRNTGIYPGGWQGNRGGASSIVDDLKRHS 611
Query: 707 LLEEFKSNKTKCFELSEIAGHVVEF 731
L+E KS + ELS+IAG VVEF
Sbjct: 612 FLDELKSPNARKLELSDIAGRVVEF 636
Score = 105 (42.0 bits), Expect = 6.2e-13, Sum P(3) = 6.2e-13
Identities = 32/92 (34%), Positives = 49/92 (53%)
Query: 13 NSEGSFG--DDFEKEIGMLLREQRRQETDDCERELNLYRSGSAPPTVEGSLSAVGGLFGA 70
+ G FG D +++G L++ R D + + RS SAPP++EGS +A+ L
Sbjct: 23 SDSGIFGSLDMAVEDLGFLMKRNRLDSGDQTGKFPS--RSESAPPSMEGSFAALRNLLKQ 80
Query: 71 ADNNMAFSELSRAKAGNNNGFSSEEELRSDPA 102
+ + + LSRA + SEEE+RSDPA
Sbjct: 81 QEGSSS-EVLSRAI----ENYDSEEEIRSDPA 107
Score = 37 (18.1 bits), Expect = 6.2e-13, Sum P(3) = 6.2e-13
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 274 IGPPSSYTYAAVLGSSLS 291
+ PP YT A +SLS
Sbjct: 378 LAPPPMYTSTAAYMTSLS 395
>TAIR|locus:2117552 [details] [associations]
symbol:PUM6 "pumilio 6" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0009507 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AL049480 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 EMBL:AF360298 EMBL:AY133866 EMBL:AK318840
EMBL:AK319148 IPI:IPI00518278 IPI:IPI00520481 IPI:IPI00656838
IPI:IPI00972816 PIR:T04242 RefSeq:NP_001031720.1 RefSeq:NP_567733.1
RefSeq:NP_974618.2 UniGene:At.21892 UniGene:At.28428
ProteinModelPortal:Q9C5E7 SMR:Q9C5E7 STRING:Q9C5E7 PaxDb:Q9C5E7
PRIDE:Q9C5E7 EnsemblPlants:AT4G25880.1 GeneID:828694
KEGG:ath:AT4G25880 TAIR:At4g25880 InParanoid:Q9C5E7 OMA:MEGSFLA
PhylomeDB:Q9C5E7 ProtClustDB:CLSN2689613 Genevestigator:Q9C5E7
Uniprot:Q9C5E7
Length = 861
Score = 86 (35.3 bits), Expect = 0.00028, Sum P(4) = 0.00028
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 693 WHLDASMDESFGSSL---LEEFKSNKTKCFELSEIAGHVVEF 731
W S++ + G L LEE KS K + F+LS+I GH+VEF
Sbjct: 499 WQPQGSLEGANGPRLCNFLEELKSGKGRRFDLSDITGHIVEF 540
Score = 66 (28.3 bits), Expect = 0.00028, Sum P(4) = 0.00028
Identities = 39/135 (28%), Positives = 56/135 (41%)
Query: 551 AGSQMGGGALQF-------P----FVDPVYLQYLRSSEYAAQLAALNDPSVDRNFLGNSY 599
AGS + GG +Q+ P F DP+Y+QY + S Q+ +P RN +
Sbjct: 381 AGSVVHGGEMQYAEKLYVPPGQPSFPDPMYMQYCQQS--FGQM----EPLAPRN-----H 429
Query: 600 MNLLELQK---AYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSY-P---GS 652
N E QK +L + P S P G N++G P G+ + Y P G
Sbjct: 430 TNAPESQKDDPKFLRQIRGPSNSNMARP----GMGVNYYGI--QPNMGIMVQYLPTHLGP 483
Query: 653 PLANPVIPNSPVGPG 667
PL+ +P PG
Sbjct: 484 PLSPGHVPYVEAYPG 498
Score = 65 (27.9 bits), Expect = 0.00028, Sum P(4) = 0.00028
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 49 RSGSAPPTVEGSLSAVGGLF----GAADNNM 75
RSGSAPP +EGS AV L G+ NN+
Sbjct: 27 RSGSAPPNMEGSFLAVDNLLSRQGGSVYNNL 57
Score = 43 (20.2 bits), Expect = 0.00028, Sum P(4) = 0.00028
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 340 ESADLVAALSGMNLSTNGVLNEDNQLP--SQIEQDIENHQNYLHGIQGGQN 388
+ + +++ + N+S G + P Q E+ QN IQGG N
Sbjct: 223 DESTIISKMKSTNISGPGTAKYPRE-PRYGQPERQPHQQQNNATWIQGGSN 272
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.130 0.374 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 749 678 0.00079 121 3 11 23 0.48 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 6
No. of states in DFA: 612 (65 KB)
Total size of DFA: 313 KB (2159 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 63.78u 0.12s 63.90t Elapsed: 00:00:03
Total cpu time: 63.79u 0.12s 63.91t Elapsed: 00:00:03
Start: Sat May 11 03:43:24 2013 End: Sat May 11 03:43:27 2013