BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039493
(749 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2 OS=Arabidopsis thaliana GN=APUM2 PE=1 SV=1
Length = 972
Score = 622 bits (1605), Expect = e-177, Method: Compositional matrix adjust.
Identities = 386/738 (52%), Positives = 477/738 (64%), Gaps = 103/738 (13%)
Query: 1 MLSELGRRPMI-GNSEGSFGDDFEKEIGMLLREQRRQ--ETDDCERELNLYRSGSAPPTV 57
M+ ELGRRPM GN + SFGDD+EKEIG+LL EQ+R+ E D+ ERELNLYRSGSAPPTV
Sbjct: 1 MIPELGRRPMHRGNEDSSFGDDYEKEIGVLLGEQQRRQVEADELERELNLYRSGSAPPTV 60
Query: 58 EGSLSAVGGLFGAADNNMAFSELSRAKAGNNNGFSSEEELRSDPAYLSYYYSNVNLNPRL 117
+GS+SA GGL + F E GN G +EE R DPAYLSYYY+N+ LNPRL
Sbjct: 61 DGSVSAAGGL-FSGGGGAPFLEFGGGNKGNGFG-GDDEEFRKDPAYLSYYYANMKLNPRL 118
Query: 118 PPPLLSKEDWRFAQRLRGESSMLGELDDRRKVNGGAGNSGSGGNRSLFSMPPGFDTRKQQ 177
PPPL+S+ED R AQRL+G S++LG + DRRKVN ++SLFSMPPGFD RKQ
Sbjct: 119 PPPLMSREDLRVAQRLKGSSNVLGGVGDRRKVND---------SQSLFSMPPGFDQRKQH 169
Query: 178 SESAQDKLRSSADWGGDGLIGLSGIGLGSKQKSLAEIFQDDLGRATPVTGNPSRPASRNA 237
+ SS++W +GLIGL G+G+G KQKS A+IFQ D+G PVT PSRPASRN
Sbjct: 170 EFEVEKTSASSSEWDANGLIGLPGLGIGGKQKSFADIFQADMGHGHPVTKQPSRPASRNT 229
Query: 238 FDESIESISSAEAELANLRHDLKSGANVQGTSAVQTIGPPSSYTYAAVLGSSLSRSTTPD 297
FDE+++S N SA Q IG PS Y+YAAVLGSSLSR+ TPD
Sbjct: 230 FDENVDS------------------KNNLSPSASQGIGAPSPYSYAAVLGSSLSRNGTPD 271
Query: 298 PQLVARAPSPCPTAIGSGRVGASEKRGMTSSNSFSGVSSGINESADLVAALSGMNLSTNG 357
PQ +AR PSPC T IGSGRV +++KR ++ + F+G G+NES+DLV ALSGMNLS +G
Sbjct: 272 PQAIARVPSPCLTPIGSGRVSSNDKRNTSNQSPFNG---GLNESSDLVNALSGMNLSGSG 328
Query: 358 VLNEDNQLPSQIEQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNLQMPPGLQSAKMSY 417
L+E Q EQD+E +NY+ G+QGG N + Q+ + KSD
Sbjct: 329 GLDER----GQAEQDVEKVRNYMFGLQGGHNEVNQHGFPNKSD----------------- 367
Query: 418 SDLAKSNGGGLDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGGGLNSQYQNVD 477
+ QK NS L+G+ ST N GGG+ +QYQ++D
Sbjct: 368 ------------------------QAQKATGLLRNSQLRGAQGSTYNDGGGVATQYQHLD 403
Query: 478 NLPNYGLGGYALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVLGGGF-ASG 536
+ PNY L Y L+P++AS+MA QLG N P+YEN +AASAM GMDSR+ GGG+ +SG
Sbjct: 404 S-PNYCLNNYGLNPAVASMMANQLGTNNYSPVYENASAASAMGFSGMDSRLHGGGYVSSG 462
Query: 537 QNLSATSESHNLNRAGSQM--GGGALQFPFVDPVYLQYLRSSEYAAQLAALNDPSVDRNF 594
QNL SES NL R ++M GG LQ DP+Y Q YA L LNDPS+D NF
Sbjct: 463 QNL---SESRNLGRFSNRMMGGGTGLQSHMADPMYHQ------YADSLDLLNDPSMDVNF 513
Query: 595 LGNSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYPGSPL 654
+GNSYMN+LELQ+AYLG QKSQYG P KS N H G+P FG SYPGSPL
Sbjct: 514 MGNSYMNMLELQRAYLGA----QKSQYGVPY--KSGSPNSHTDYGSPTFG---SYPGSPL 564
Query: 655 ANPVIPNSPVGPGSPIRHNDPNLRF-AGMRNLAGGVMGPWHLDASMDESFGSSLLEEFKS 713
A+ ++PNS V P SP+R + N+R+ + RN AGGVMG WH+DAS+DE FGSS+LEEFKS
Sbjct: 565 AHHLLPNSLVSPCSPMRRGEVNMRYPSATRNYAGGVMGSWHMDASLDEGFGSSMLEEFKS 624
Query: 714 NKTKCFELSEIAGHVVEF 731
NKT+ FEL+EIAGHVVEF
Sbjct: 625 NKTRGFELAEIAGHVVEF 642
>sp|Q9ZW07|PUM1_ARATH Pumilio homolog 1 OS=Arabidopsis thaliana GN=APUM1 PE=1 SV=1
Length = 968
Score = 603 bits (1555), Expect = e-171, Method: Compositional matrix adjust.
Identities = 378/739 (51%), Positives = 476/739 (64%), Gaps = 109/739 (14%)
Query: 1 MLSELGRRPMI-GNSEGSFGDDFEKEIGMLLREQRRQ--ETDDCERELNLYRSGSAPPTV 57
M+ ELGRRPM GN + SFGDD+EKEIG+LL EQ+R+ E D+ ERELNL+RSGSAPPTV
Sbjct: 1 MIPELGRRPMHRGNEDSSFGDDYEKEIGVLLGEQQRRQVEADELERELNLFRSGSAPPTV 60
Query: 58 EGSLSAVGGLFGAADNNMAFSELSRAKAGNNNGFSSEEELRSDPAYLSYYYSNVNLNPRL 117
+GS+SA GGL + F E GN G +EE R DPAYLSYYY+N+ LNPRL
Sbjct: 61 DGSVSAAGGL-FSGGGGAPFLEFGGVNKGNGFG-GDDEEFRKDPAYLSYYYANMKLNPRL 118
Query: 118 PPPLLSKEDWRFAQRLRGESSMLGELDDRRKVNGGAGNSGSGGNRSLFSMPPGFDTRKQQ 177
PPPL+S+ED R AQRL+G +++LG + DRRKVN NRSLFSMPPGF+ K
Sbjct: 119 PPPLMSREDLRVAQRLKGSNNVLGGVGDRRKVND---------NRSLFSMPPGFEGEKTG 169
Query: 178 SESAQDKLRSSADWGGDGLIGLSGIGLGSKQKSLAEIFQDDLGRATPVTGNPSRPASRNA 237
+ S+++W +GLIGL G+GLG KQKS A+IFQ D+G PV PSRPASRN
Sbjct: 170 A--------SASEWDANGLIGLPGLGLGGKQKSFADIFQADMGHGHPVAQQPSRPASRNT 221
Query: 238 FDESIESISSAEAELANLRHDLKSGANVQGTSAVQTIGPPSSYTYAAVLGSSLSRSTTPD 297
FDE+++S N SA Q IG PS Y+YAAVLGSSLSR+ TPD
Sbjct: 222 FDENVDS------------------NNNLSPSASQGIGAPSPYSYAAVLGSSLSRNGTPD 263
Query: 298 PQLVARAPSPCPTAIGSGRVGASEKRGMTSSNSFSGVSSGINESADLVAALSGMNLSTNG 357
PQ +AR PSPC T IGSGR+ +++KR ++ + F+GV+SG+NES+DLV ALSG+NLS +
Sbjct: 264 PQAIARVPSPCLTPIGSGRMSSNDKRNTSNQSPFNGVTSGLNESSDLVNALSGLNLSCSV 323
Query: 358 VLNEDNQLPSQIEQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNLQMPPGLQSAKMSY 417
L++ SQ EQD+E +NY+ G+QGG N + Q+++ KSD +
Sbjct: 324 GLDDR----SQAEQDVEKVRNYMFGLQGGHNEVNQHEFPNKSDQAH-------------- 365
Query: 418 SDLAKSNGGGLDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGGGLNSQYQNVD 477
K+ G NS L+G S NGG GL + YQ +D
Sbjct: 366 ----KATGS-----------------------LRNSQLRGPHGSAYNGGVGLANPYQQLD 398
Query: 478 NLPNYGLGGYALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVLGGGF-ASG 536
+ PNY L YAL+P++AS+MA QLG N P+Y+NV SA+ GMDSR G GF +SG
Sbjct: 399 S-PNYCLNNYALNPAVASMMANQLGNNNFAPMYDNV---SALGFSGMDSRHHGRGFVSSG 454
Query: 537 QNLSATSESHNLNRAGSQM--GGGALQFPFVDPVYLQYLRSSEYAAQLAALNDPSVDRNF 594
QNLS ES NL R ++M GG LQ VDP+Y ++YA L LNDPS+DRNF
Sbjct: 455 QNLS---ESRNLGRFSNRMMGGGAGLQSHMVDPMY------NQYADSLDLLNDPSMDRNF 505
Query: 595 LG-NSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYPGSP 653
+G +SYM++LELQ+AYLG QKSQYG P KS N H Y G+P FG MSYPGSP
Sbjct: 506 MGGSSYMDMLELQRAYLGA----QKSQYGVPY--KSGSPNSHSYYGSPTFGSNMSYPGSP 559
Query: 654 LANPVIPNSPVGPGSPIRHNDPNLRF-AGMRNLAGGVMGPWHLDASMDESFGSSLLEEFK 712
LA+ +PNS + P SP+R ++ N+RF + RN +GG+MG WH+DAS DE FGSS+LEEFK
Sbjct: 560 LAHHGMPNSLMSPYSPMRRDEVNMRFPSATRNYSGGLMGSWHMDASFDEGFGSSMLEEFK 619
Query: 713 SNKTKCFELSEIAGHVVEF 731
SNKT+ FELSEIAGHVVEF
Sbjct: 620 SNKTRGFELSEIAGHVVEF 638
>sp|Q9ZW02|PUM3_ARATH Pumilio homolog 3 OS=Arabidopsis thaliana GN=APUM3 PE=1 SV=1
Length = 964
Score = 583 bits (1503), Expect = e-165, Method: Compositional matrix adjust.
Identities = 371/738 (50%), Positives = 463/738 (62%), Gaps = 112/738 (15%)
Query: 1 MLSELGRRPMI-GNSEGSFGDDFEKEIGMLLREQRRQ--ETDDCERELNLYRSGSAPPTV 57
M+ ELGRRPM GN + SFGDD+EKEIG+LL EQ+R+ E D+ ERELNLYRSGSAPPTV
Sbjct: 2 MIPELGRRPMHRGNEDSSFGDDYEKEIGVLLGEQQRRQVEADELERELNLYRSGSAPPTV 61
Query: 58 EGSLSAVGGLFGAADNNMAFSELSRAKAGNNNGFSSEEELRSDPAYLSYYYSNVNLNPRL 117
+GSLSA GGL + +F E GN G +EE R DPAYLSYYY+N+ LNPRL
Sbjct: 62 DGSLSAAGGL-FSGGGGASFLEFGGVNKGNGFG-GDDEEFRKDPAYLSYYYANMKLNPRL 119
Query: 118 PPPLLSKEDWRFAQRLRGESSMLGELDDRRKVNGGAGNSGSGGNRSLFSMPPGFDTRKQQ 177
PPPL+S+ED R AQRL+G +++LG + DRRKVN +RSLFSMPPGF+ K
Sbjct: 120 PPPLMSREDLRVAQRLKGSNNVLGGVGDRRKVND---------SRSLFSMPPGFEAGKPG 170
Query: 178 SESAQDKLRSSADWGGDGLIGLSGIGLGSKQKSLAEIFQDDLGRATPVTGNPSRPASRNA 237
+ S+++W +GLIGL G KQKS A+IFQ D+G PV PSRPASRN
Sbjct: 171 A--------SASEWDANGLIGLGL---GGKQKSFADIFQADMGH--PVVQQPSRPASRNT 217
Query: 238 FDESIESISSAEAELANLRHDLKSGANVQGTSAVQTIGPPSSYTYAAVLGSSLSRSTTPD 297
FDE+++S N SA Q IG PS Y YAAVLGSSLSR+ TPD
Sbjct: 218 FDENVDS------------------NNNLSPSASQGIGAPSPYCYAAVLGSSLSRNGTPD 259
Query: 298 PQLVARAPSPCPTAIGSGRVGASEKRGMTSSNSFSGVSSGINESADLVAALSGMNLSTNG 357
PQ +AR PSPC T IGSGRV +++KR ++ + F+GV+SG+NES+DLV ALSG+NLS G
Sbjct: 260 PQGIARVPSPCLTPIGSGRVSSNDKRNTSNQSPFNGVTSGLNESSDLVNALSGLNLSGTG 319
Query: 358 VLNEDNQLPSQIEQDIENHQNYLHGIQGGQNHIKQNKYMKKSDSGNLQMPPGLQSAKMSY 417
L+E Q EQD+E +NY+ G+Q G N + + + +SD G S +
Sbjct: 320 GLDER----GQAEQDVEKVRNYMFGLQDGHNEVNPHGFPNRSDQAR-----GTASCR--- 367
Query: 418 SDLAKSNGGGLDLNNASLLTDRRVELQKPAVPTSNSYLKGSPTSTLNGGGGLNSQYQNVD 477
NS ++GS S N G G+ + YQ+ D
Sbjct: 368 ----------------------------------NSQMRGSQGSAYNSGSGVANPYQHHD 393
Query: 478 NLPNYGLGGYALSPSMASVMAGQLGAGNLPPLYENVAAASAMAVPGMDSRVLGGGF-ASG 536
+ PNY YAL+P++AS+MA QLG N P+YEN A++ + MDSR+ GG F +SG
Sbjct: 394 S-PNY----YALNPAVASMMANQLGTNNYSPMYEN--ASATLGYSAMDSRLHGGSFVSSG 446
Query: 537 QNLSATSESHNLNRAGSQMGGGALQFP--FVDPVYLQYLRSSEYAAQLAALNDPSVDRNF 594
QNL SES N+ R G++M G P DP+Y QY R SE A LNDPS+DRN+
Sbjct: 447 QNL---SESRNIGRVGNRMMEGGTGHPSHLADPMYHQYARFSENADSFDLLNDPSMDRNY 503
Query: 595 LGNSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYPGSPL 654
GNSYMN+LE+Q+AYLG QKSQYG P KS N H Y G+P FG MSYPGSPL
Sbjct: 504 -GNSYMNMLEIQRAYLG----SQKSQYGLPY--KSGSPNSHSYYGSPTFGSNMSYPGSPL 556
Query: 655 ANPVIPNSPVGPGSPIRHNDPNLRF-AGMRNLAGGVMGPWHLDASMDESFGSSLLEEFKS 713
A+ +PNS + P SP+R + N+R+ A RN GGVMG WH+DAS+DE FGSS+LEEFKS
Sbjct: 557 AHHGMPNSLMSPYSPMRRGEVNMRYPAATRNYTGGVMGSWHMDASLDEGFGSSMLEEFKS 616
Query: 714 NKTKCFELSEIAGHVVEF 731
NKT+ FELSEIAGHVVEF
Sbjct: 617 NKTRGFELSEIAGHVVEF 634
>sp|Q9SS47|PUM4_ARATH Pumilio homolog 4 OS=Arabidopsis thaliana GN=APUM4 PE=1 SV=2
Length = 1003
Score = 169 bits (427), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 133/390 (34%), Positives = 202/390 (51%), Gaps = 45/390 (11%)
Query: 20 DDFEKEIGMLLREQRRQET--DDCERELNLYRSGSAPPTVEGSLSAVGGLFGAADN--NM 75
D F++E+ LL++ R Q++ + ER+++++RSGSAPPTVEG L A+ + +N +
Sbjct: 26 DRFQRELESLLQQHRNQQSFGRERERDIDVHRSGSAPPTVEGLLRAMDNQYLNNNNSDHR 85
Query: 76 AFSELSRAKAGNNNGFSSEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWRFAQRLRG 135
+S N S++ELR P YLSYYYSN + NPRLPPPLLS+EDWR AQR
Sbjct: 86 DVGNISSITTSNGVELLSDDELRWHPEYLSYYYSNEHSNPRLPPPLLSREDWRVAQRFHN 145
Query: 136 ESSMLGELDDRRKVNGGAGNSGSGGNRSLFSMPPGFDTRKQQSESAQDKLRSSA------ 189
S+ + + RK NS SLFS+ PG +Q+E+ +LR++
Sbjct: 146 SESVFDPVGEWRKKTVEVDNSS-----SLFSVQPGVPV--EQAENDLMELRNAVAQGRSQ 198
Query: 190 -----DWGGDGLIGLSGI-GLGSKQKSLAEIFQDDLGRATPVTGNPSRPASRNAFDESIE 243
D G + LIGLSG GLG ++KS A+I Q+ L R + SRPAS N F + +
Sbjct: 199 KVQRLDQGREDLIGLSGYSGLGPRRKSFADILQEGLERDAALGSQLSRPASCNTFRDMKD 258
Query: 244 SISSAEAELANLRHDLKSGANVQGTSAVQTIGPPSSYTYAAVLGSSLS----RSTTPDPQ 299
+ A L+N +G + ++ + + +LGS++S R+ TPD
Sbjct: 259 A-----AVLSN----FSAGGFDSPLAFHDSLHSTAKNSPNTMLGSTMSSPVPRNRTPDSH 309
Query: 300 LVARAPSPCPTAIGSGRVGASEKRGMTSSNSFSGVSSGIN--ESADLVAALSGMNLSTNG 357
LV R+ + IG+ RVG EK+ N+F +AD+ LS +N+S
Sbjct: 310 LVGRSTASGLPPIGT-RVGPVEKK-----NTFGTAIQNCESYTAADVADTLSRLNMSEMS 363
Query: 358 VLNEDNQLPSQIEQDIENHQNYLHGIQGGQ 387
+ E N + SQ++ ++EN + + I G
Sbjct: 364 QVKE-NHMQSQLQVELENQSDVMRYIPNGH 392
>sp|Q9LJX4|PUM5_ARATH Pumilio homolog 5 OS=Arabidopsis thaliana GN=APUM5 PE=1 SV=2
Length = 961
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 9/120 (7%)
Query: 16 GSFG--DDFEKEIGMLLREQRRQETDDCERELNLYRSGSAPPTVEGSLSAVGGLFGAADN 73
G FG D +++G L++ R D + + RS SAPP++EGS +A+ L +
Sbjct: 26 GIFGSLDMAVEDLGFLMKRNRLDSGDQTGKFPS--RSESAPPSMEGSFAALRNLLKQQEG 83
Query: 74 NMAFSELSRAKAGNNNGFSSEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWRFAQRL 133
+ + LSRA + SEEE+RSDPAY++YY SN+NLNPRLPPPL+S+E+ +
Sbjct: 84 SSS-EVLSRAI----ENYDSEEEIRSDPAYVAYYLSNINLNPRLPPPLISRENQHLLRHF 138
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 110/265 (41%), Gaps = 49/265 (18%)
Query: 479 LPNYGLGGYALSPSMA-SVMAGQLGAGNLPPLYENVAAASAMAVPGMDS-RVLGGGFASG 536
+P Y GGY + + M+G P+ ++++ S+ G ++ R+L G +SG
Sbjct: 409 VPQYNYGGYPPASGIVPQYMSGYPSHEATVPMPYDISSTSS----GYNNPRLLPGVSSSG 464
Query: 537 QNLSATSESHNLNRAGSQMGGGALQFPFVDPVYLQYLRSSE---YAAQLAALNDPSVDRN 593
QN+ + VDP LQY + ++ YA + D ++
Sbjct: 465 QNIPS----------------------LVDPFQLQYFQQAQVDAYAPPFQSSTDSFGQKD 502
Query: 594 FLGNSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYPGSP 653
YM A L SP YG L S N+ + PG + YPGSP
Sbjct: 503 QQAVGYM-------ANHEPLNSPLSPGYG--LQSPRHMGNY--FAVPPGVRVMPQYPGSP 551
Query: 654 LANPVIPNSPVGPGSPI--RHNDPNLRFAGMRNLAGGVMGPWH-----LDASMDESFGSS 706
LA+PV+P+SPVG R ++ G G G W + +D+ S
Sbjct: 552 LASPVMPSSPVGGMMSHFGRRSETRYHQQGPSRNTGIYPGGWQGNRGGASSIVDDLKRHS 611
Query: 707 LLEEFKSNKTKCFELSEIAGHVVEF 731
L+E KS + ELS+IAG VVEF
Sbjct: 612 FLDELKSPNARKLELSDIAGRVVEF 636
>sp|Q9C5E7|PUM6_ARATH Pumilio homolog 6, chloroplastic OS=Arabidopsis thaliana GN=APUM6
PE=1 SV=1
Length = 861
Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 80/202 (39%), Gaps = 63/202 (31%)
Query: 551 AGSQMGGGALQFP-----------FVDPVYLQYLRSSEYAAQLAALNDPSVDRNFLGNSY 599
AGS + GG +Q+ F DP+Y+QY + S Q+ +P RN +
Sbjct: 381 AGSVVHGGEMQYAEKLYVPPGQPSFPDPMYMQYCQQS--FGQM----EPLAPRN-----H 429
Query: 600 MNLLELQK---AYLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYP----GS 652
N E QK +L + P S P G N++G P G+ + Y G
Sbjct: 430 TNAPESQKDDPKFLRQIRGPSNSNMARP----GMGVNYYGI--QPNMGIMVQYLPTHLGP 483
Query: 653 PLANPVIPNSPVGPGSPIRHNDPNLRFAGMRNLAGGVMGPWHLDASMDESFGSSL---LE 709
PL+ +P PG W S++ + G L LE
Sbjct: 484 PLSPGHVPYVEAYPG-------------------------WQPQGSLEGANGPRLCNFLE 518
Query: 710 EFKSNKTKCFELSEIAGHVVEF 731
E KS K + F+LS+I GH+VEF
Sbjct: 519 ELKSGKGRRFDLSDITGHIVEF 540
Score = 33.1 bits (74), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 74/178 (41%), Gaps = 45/178 (25%)
Query: 49 RSGSAPPTVEGSLSAVGGLF----GAADNNMAFSELSRAKAGNNNGFSSEEELRSDPAYL 104
RSGSAPP +EGS AV L G+ NN+ GF EE + + P+
Sbjct: 27 RSGSAPPNMEGSFLAVDNLLSRQGGSVYNNLMLPRY---------GF--EEPVTTHPS-- 73
Query: 105 SYYYSNVNLNPRLP-PPLLSKEDWRFAQRLRGESSMLGELDDRRKVNGGAGNSGSGGNRS 163
S +LN R+P PP+ +++F +D+R V N G S
Sbjct: 74 ----SKHSLN-RIPSPPIYYPTEYQF-------------IDNR--VGRFRSNQGLNKVNS 113
Query: 164 LFSMPPG-FDTRKQ--QSESAQDKLRSSADWGGDGLIGLSGIGLGSKQKSLAEIFQDD 218
+ G T K+ + ES+Q +S DGL I L +SLA+ QDD
Sbjct: 114 PIHLSQGKLSTHKEVSEDESSQQLSVNSVSDRTDGL----DIRLSPGSQSLADFRQDD 167
>sp|O26806|GUAAB_METTH GMP synthase [glutamine-hydrolyzing] subunit B
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=guaAB PE=3 SV=2
Length = 308
Score = 40.4 bits (93), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 14/139 (10%)
Query: 523 GMDSRV--LGGGFASGQNLSATSESHNLNRAGS-----QMGGGALQFPFVDPVYLQYLRS 575
G+DS V + G A G NL+A H L R G + L F ++D S
Sbjct: 31 GVDSSVASVLAGRAIGDNLTAVFVDHGLLREGEAEYVRKTFSERLNFRYIDA-------S 83
Query: 576 SEYAAQLAALNDPSVDRNFLGNSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNHH 635
E+ +L + DP R +G ++ + E +G Q + + S+ +HH
Sbjct: 84 EEFLKELEGVTDPEEKRKIIGRVFIEVFERVAEEIGARYLVQGTIAPDWIESEGQIKSHH 143
Query: 636 GYCGTPGFGLGMSYPGSPL 654
G L + P L
Sbjct: 144 NVALPHGLVLEIVEPIREL 162
>sp|B8GIB2|GUAAB_METPE GMP synthase [glutamine-hydrolyzing] subunit B OS=Methanosphaerula
palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c)
GN=guaAB PE=3 SV=1
Length = 305
Score = 37.0 bits (84), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 575 SSEYAAQLAALNDPSVDRNFLGNSYMNLLELQKAYLGVLLSPQKSQYGGPLGSKSSGSNH 634
S E+ LA + DP R +G ++ + E + G + Q + Y + S+ +H
Sbjct: 82 SDEFLDALAGVADPETKRKIIGERFIRVFEREAEKTGATVLLQGTIYPDRIESEGGIKSH 141
Query: 635 HGYCGTPGFGLGMSYPGSPLAN 656
H G P G+ + PL +
Sbjct: 142 HNVGGMP-LGIAFTQVLEPLRD 162
>sp|Q68DV7|RNF43_HUMAN E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens GN=RNF43 PE=1
SV=1
Length = 783
Score = 36.6 bits (83), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 584 ALNDPS---VDRNFLGNSYMNLLELQKAYLGVLLSPQKSQYGGP----LGSKSSGSNHHG 636
AL +P+ VD + + S +L LQK+ L PQ+ + GGP GS+ + H
Sbjct: 618 ALPEPAPGPVDASSICPSTSSLFNLQKSSLSAR-HPQRKRRGGPSEPTPGSRPQDATVHP 676
Query: 637 YCGT-PGFGLGMSYPGSPLANPVI 659
C P + ++YP SP A+P+I
Sbjct: 677 ACQIFPHYTPSVAYPWSPEAHPLI 700
>sp|Q80U78|PUM1_MOUSE Pumilio homolog 1 OS=Mus musculus GN=Pum1 PE=1 SV=2
Length = 1189
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 705 SSLLEEFKSNKTKCFELSEIAGHVVEF 731
S LLE+F++N+ +L EIAGH++EF
Sbjct: 831 SRLLEDFRNNRYPNLQLREIAGHIMEF 857
>sp|Q2VB19|PUM1_CHICK Pumilio homolog 1 OS=Gallus gallus GN=PUM1 PE=2 SV=1
Length = 1189
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 705 SSLLEEFKSNKTKCFELSEIAGHVVEF 731
S LLE+F++N+ +L EIAGH++EF
Sbjct: 831 SRLLEDFRNNRYPNLQLREIAGHIMEF 857
>sp|Q14671|PUM1_HUMAN Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=3
Length = 1186
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 705 SSLLEEFKSNKTKCFELSEIAGHVVEF 731
S LLE+F++N+ +L EIAGH++EF
Sbjct: 830 SRLLEDFRNNRYPNLQLREIAGHIMEF 856
>sp|Q5R5X3|PUM1_PONAB Pumilio homolog 1 OS=Pongo abelii GN=PUM1 PE=2 SV=1
Length = 1186
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 705 SSLLEEFKSNKTKCFELSEIAGHVVEF 731
S LLE+F++N+ +L EIAGH++EF
Sbjct: 830 SRLLEDFRNNRYPNLQLREIAGHIMEF 856
>sp|Q9RT91|GUAA_DEIRA GMP synthase [glutamine-hydrolyzing] OS=Deinococcus radiodurans
(strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 /
NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=guaA PE=3
SV=1
Length = 506
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 11/116 (9%)
Query: 534 ASGQNLSATSESHNLNRAGSQMGGGALQFPF-VDPVYLQYLRSSEYAAQLAALNDPSVDR 592
A G+ L+A H L R G + A P V+ V + E+ QLA ++DP R
Sbjct: 234 AVGERLTAVFIDHGLLRLGEREQVEAALTPLGVNLVTVD--AKDEFLGQLAGVSDPEQKR 291
Query: 593 NFLGNSYMNLLELQKAYLGVL-------LSPQKSQYGGPLGSKSSGSNHHGYCGTP 641
+G ++ E + A LG L P + G G+ + S HH G P
Sbjct: 292 KIIGREFIRAFERETAKLGDFEFLAQGTLYPDVIESAGGEGAANIKS-HHNVGGLP 346
>sp|Q6FVJ1|RTC1_CANGA Restriction of telomere capping protein 1 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=RTC1 PE=3 SV=1
Length = 1336
Score = 33.9 bits (76), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 609 YLGVLLSPQKSQYGGPLGSKSSGSNHHGYCGTPGFGLGMSYPGSPLANPVIPNSPVGPGS 668
Y+G S +S Y S ++ +N T G+G YPG+P+A+ IP + + GS
Sbjct: 424 YVGDRRSTDQSPYSTTFLSSNATTN------TSSIGIG--YPGNPVASTFIPETTINTGS 475
Query: 669 PI 670
PI
Sbjct: 476 PI 477
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.130 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 294,730,586
Number of Sequences: 539616
Number of extensions: 13777149
Number of successful extensions: 32939
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 122
Number of HSP's that attempted gapping in prelim test: 32516
Number of HSP's gapped (non-prelim): 417
length of query: 749
length of database: 191,569,459
effective HSP length: 125
effective length of query: 624
effective length of database: 124,117,459
effective search space: 77449294416
effective search space used: 77449294416
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)