Query 039493
Match_columns 749
No_of_seqs 137 out of 172
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 17:34:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039493.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039493hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m8za_ a.118.1.8 (A:) Pumilio 11.0 17 0.0012 34.6 -1.3 27 721-747 235-261 (339)
2 d1cmra_ g.3.7.2 (A:) Charybdot 8.3 14 0.001 25.1 -2.1 14 122-135 3-16 (31)
3 d2npta1 d.15.2.2 (A:4-108) Mit 7.9 27 0.002 29.7 -1.0 29 90-121 68-99 (105)
4 d1jifa_ d.32.1.2 (A:) Bleomyci 6.2 82 0.006 24.3 1.2 17 717-733 104-120 (122)
5 d1ijwc_ a.4.1.2 (C:) HIN recom 6.0 1.3E+02 0.0096 21.6 2.1 17 119-135 3-19 (47)
6 d2h62c1 g.7.1.3 (C:34-117) BMP 5.3 88 0.0064 24.8 0.8 11 109-119 74-84 (84)
7 d1lmea_ d.167.1.1 (A:) Peptide 4.9 99 0.0072 27.1 0.9 36 714-749 109-144 (154)
8 d2e9xd1 a.278.1.4 (D:21-165) G 4.7 84 0.0061 27.6 0.3 34 102-135 82-115 (145)
9 d1xrka_ d.32.1.2 (A:) Bleomyci 4.7 1.2E+02 0.0089 22.9 1.3 18 717-734 103-120 (120)
10 d1zara1 a.4.5.56 (A:2-90) Rio2 4.2 1.8E+02 0.013 23.6 2.0 16 122-137 9-24 (89)
No 1
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.98 E-value=17 Score=34.57 Aligned_cols=27 Identities=15% Similarity=0.248 Sum_probs=21.4
Q ss_pred ecccccceeEeecCcccchhhhhhhhc
Q 039493 721 LSEIAGHVVEFRYAMLLAHLMLHFSAV 747 (749)
Q Consensus 721 L~DI~GhvvEFs~DQ~GSRFIQ~~~~~ 747 (749)
++-+.|||+|+|.|.||||.++.-+..
T Consensus 235 ~~~l~~~~~~l~~~k~gS~vve~~l~~ 261 (339)
T d1m8za_ 235 VAEIRGNVLVLSQHKFASNVVEKCVTH 261 (339)
T ss_dssp HHHHTTCHHHHHTSTTHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHcchhHHHHHHHHHHh
Confidence 345678999999999999988876654
No 2
>d1cmra_ g.3.7.2 (A:) Charybdotoxin {Scorpion (Leiurus quinquestriatus hebraeus) [TaxId: 6884]}
Probab=8.32 E-value=14 Score=25.07 Aligned_cols=14 Identities=50% Similarity=0.750 Sum_probs=12.7
Q ss_pred CChhhHHHHHHhhC
Q 039493 122 LSKEDWRFAQRLRG 135 (749)
Q Consensus 122 lSkEdwR~aqRl~~ 135 (749)
-|||=|-+.|||+.
T Consensus 3 tskecwsvcqrlhn 16 (31)
T d1cmra_ 3 TSKECWSVCQRLHN 16 (31)
T ss_dssp SGGGSSSSSTTTSS
T ss_pred ccHHHHHHHHHHhc
Confidence 48999999999996
No 3
>d2npta1 d.15.2.2 (A:4-108) Mitogen activated protein kinase kinase 5, Map2k5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.85 E-value=27 Score=29.72 Aligned_cols=29 Identities=52% Similarity=0.839 Sum_probs=19.8
Q ss_pred CCCChhhhccCcccceeeccCC---CCCCCCCCCC
Q 039493 90 GFSSEEELRSDPAYLSYYYSNV---NLNPRLPPPL 121 (749)
Q Consensus 90 ~~~seeelRsdPAYl~YYYSnv---nLNPRLPPPL 121 (749)
.+-|+|||. |.++|||+-+ --|=-+++||
T Consensus 68 TVRSDEEl~---AMisyy~~~~~eq~~~g~~~~pL 99 (105)
T d2npta1 68 TVRSDEEMK---AMLSYYYSTVMEQQVNGQLIEPL 99 (105)
T ss_dssp EECSHHHHH---HHHHHHHHHHHHHHTTTCCCCCE
T ss_pred EEccHHHHH---HHHHHHHHHHHHHHhcCCCCCCe
Confidence 378999999 8999998732 1233455554
No 4
>d1jifa_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Streptomyces verticillus [TaxId: 29309]}
Probab=6.19 E-value=82 Score=24.32 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=14.8
Q ss_pred CceeecccccceeEeec
Q 039493 717 KCFELSEIAGHVVEFRY 733 (749)
Q Consensus 717 k~~EL~DI~GhvvEFs~ 733 (749)
+.+-++|--||++||+.
T Consensus 104 ~~~~~~DPdGn~ief~~ 120 (122)
T d1jifa_ 104 REFAVRDPAGNCVHFTA 120 (122)
T ss_dssp EEEEEECTTCCEEEEEE
T ss_pred EEEEEECCCCCEEEEEe
Confidence 46889999999999985
No 5
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=6.05 E-value=1.3e+02 Score=21.63 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=15.0
Q ss_pred CCCCChhhHHHHHHhhC
Q 039493 119 PPLLSKEDWRFAQRLRG 135 (749)
Q Consensus 119 PPLlSkEdwR~aqRl~~ 135 (749)
||-|+.|.|.-|+++-.
T Consensus 3 ~~~lt~~q~~~a~~l~~ 19 (47)
T d1ijwc_ 3 PRAINKHEQEQISRLLE 19 (47)
T ss_dssp CCSSCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHH
Confidence 79999999999997764
No 6
>d2h62c1 g.7.1.3 (C:34-117) BMP receptor Ia ectodomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.27 E-value=88 Score=24.78 Aligned_cols=11 Identities=55% Similarity=0.978 Sum_probs=9.6
Q ss_pred cCCCCCCCCCC
Q 039493 109 SNVNLNPRLPP 119 (749)
Q Consensus 109 SnvnLNPRLPP 119 (749)
=|.+|+|-|||
T Consensus 74 CN~~l~P~lpP 84 (84)
T d2h62c1 74 CNQYLQPTLPP 84 (84)
T ss_dssp GGGGCCCCCCC
T ss_pred cCcCCcCCCCc
Confidence 37899999998
No 7
>d1lmea_ d.167.1.1 (A:) Peptide deformylase {Thermotoga maritima [TaxId: 2336]}
Probab=4.87 E-value=99 Score=27.08 Aligned_cols=36 Identities=22% Similarity=0.136 Sum_probs=29.3
Q ss_pred CCCCceeecccccceeEeecCcccchhhhhhhhccC
Q 039493 714 NKTKCFELSEIAGHVVEFRYAMLLAHLMLHFSAVLN 749 (749)
Q Consensus 714 nk~k~~EL~DI~GhvvEFs~DQ~GSRFIQ~~~~~~~ 749 (749)
.+.-+++-.|..|..+|+-.+.+=+|-||||+--+|
T Consensus 109 ~~~I~v~~~d~~G~~~~~~~~G~~Ar~~QHEiDHL~ 144 (154)
T d1lmea_ 109 SKRIKVKYQNTRGEYVEEELEGYAARVFQHEFDHLN 144 (154)
T ss_dssp ESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHT
T ss_pred eeeEEEEEEecCCcEEEEEEecceehhhhhHhHhhC
Confidence 344456777999999999999999999999986443
No 8
>d2e9xd1 a.278.1.4 (D:21-165) GINS complex subunit 4, SLD5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.71 E-value=84 Score=27.64 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=25.1
Q ss_pred ccceeeccCCCCCCCCCCCCCChhhHHHHHHhhC
Q 039493 102 AYLSYYYSNVNLNPRLPPPLLSKEDWRFAQRLRG 135 (749)
Q Consensus 102 AYl~YYYSnvnLNPRLPPPLlSkEdwR~aqRl~~ 135 (749)
+|--||..+....+.--+.+||+|...||+++..
T Consensus 82 k~~~hil~~~~~~~~~~~~~LS~~E~~fa~~~~~ 115 (145)
T d2e9xd1 82 KFFPHVLEKEKTRPEGEPSSLSPEELAFAREFMA 115 (145)
T ss_dssp HTHHHHHHHHHTCCTTSCCSSCHHHHHHHHHHHH
T ss_pred HhHHHHHhhhccCCccccccCCHHHHHHHHHHHH
Confidence 4555666666555554567899999999999874
No 9
>d1xrka_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Streptoalloteichus hindustanus [TaxId: 2017]}
Probab=4.67 E-value=1.2e+02 Score=22.91 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=15.0
Q ss_pred CceeecccccceeEeecC
Q 039493 717 KCFELSEIAGHVVEFRYA 734 (749)
Q Consensus 717 k~~EL~DI~GhvvEFs~D 734 (749)
+.+-+.|--||++||..|
T Consensus 103 ~~~~~~DPdGn~ief~~e 120 (120)
T d1xrka_ 103 REFALRDPAGNCVHFVAE 120 (120)
T ss_dssp EEEEEECTTCCEEEEEEC
T ss_pred EEEEEECCCCCEEEEEEC
Confidence 457799999999999765
No 10
>d1zara1 a.4.5.56 (A:2-90) Rio2 serine protein kinase N-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=4.15 E-value=1.8e+02 Score=23.62 Aligned_cols=16 Identities=19% Similarity=0.503 Sum_probs=0.0
Q ss_pred CChhhHHHHHHhhCCC
Q 039493 122 LSKEDWRFAQRLRGES 137 (749)
Q Consensus 122 lSkEdwR~aqRl~~g~ 137 (749)
|+|||||+-.=+.-|+
T Consensus 9 L~~~dfRvL~aiE~gm 24 (89)
T d1zara1 9 MGKHSWRIMDAIFKNL 24 (89)
T ss_dssp CCHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHhcc
Done!