Query 039494
Match_columns 140
No_of_seqs 111 out of 1312
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 17:35:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039494.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039494hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 1.3E-34 4.5E-39 186.9 -0.2 67 1-67 7-73 (77)
2 3p57_A Myocyte-specific enhanc 100.0 4.4E-34 1.5E-38 188.9 -1.1 67 1-67 7-73 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 5.4E-32 1.8E-36 181.8 -1.1 65 1-65 23-87 (100)
4 1hbx_A SRF, serum response fac 100.0 8.5E-32 2.9E-36 178.6 -2.2 64 1-64 17-80 (92)
5 1k6o_B SRF, serum response fac 100.0 3.7E-31 1.3E-35 178.7 -2.0 64 1-64 16-79 (103)
6 1x40_A ARAP2; ASAP-related pro 58.9 6.7 0.00023 24.8 2.5 47 83-133 44-90 (91)
7 3fx7_A Putative uncharacterize 55.1 27 0.00092 22.5 4.9 30 87-116 6-35 (94)
8 2ky6_A Mediator of RNA polymer 51.7 9.5 0.00032 27.1 2.5 36 29-64 116-159 (166)
9 1p9i_A Cortexillin I/GCN4 hybr 51.3 22 0.00074 17.6 3.4 26 90-115 2-27 (31)
10 1g6u_A Domain swapped dimer; d 44.6 37 0.0013 18.4 5.0 24 85-108 15-38 (48)
11 2l5g_B Putative uncharacterize 43.5 38 0.0013 18.5 3.6 30 86-115 1-30 (42)
12 1j1d_B Troponin T, TNT; THIN f 42.6 32 0.0011 22.6 3.9 28 83-110 38-65 (106)
13 1m2d_A [2Fe-2S] ferredoxin; th 42.5 14 0.00048 23.8 2.2 31 32-63 59-90 (110)
14 4fxw_B Splicing factor 1; UHM, 41.9 44 0.0015 22.5 4.5 45 85-131 34-84 (124)
15 1ytz_T Troponin T; muscle, THI 41.5 33 0.0011 22.5 3.8 28 83-110 38-65 (107)
16 1j1d_C Troponin I, TNI; THIN f 39.1 71 0.0024 21.7 5.3 29 82-110 53-81 (133)
17 3nrf_A APAG protein; structura 38.0 3.9 0.00013 27.0 -1.2 40 6-50 23-62 (106)
18 2dl1_A Spartin; SPG20, MIT, st 37.5 89 0.003 20.7 5.9 40 81-120 62-101 (116)
19 3tso_C RAB11 family-interactin 32.2 89 0.003 19.1 5.1 24 90-113 35-58 (75)
20 3rmq_A Uncharacterized protein 30.0 11 0.00036 25.2 -0.1 13 26-38 30-42 (116)
21 2hv8_D RAB11 family-interactin 28.4 96 0.0033 18.4 5.5 34 82-115 18-51 (64)
22 1lj9_A Transcriptional regulat 27.9 1.2E+02 0.004 19.2 5.1 32 81-112 109-140 (144)
23 2rpa_A Katanin P60 ATPase-cont 26.7 4.6 0.00016 25.2 -2.2 32 22-64 16-47 (78)
24 2zvv_Y Cyclin-dependent kinase 26.4 15 0.00051 17.7 0.1 12 8-19 15-26 (26)
25 2bsj_A Chaperone protein SYCT; 25.4 55 0.0019 21.8 2.8 45 79-126 87-131 (133)
26 2eao_A Ephrin type-B receptor 24.9 96 0.0033 19.4 3.9 48 83-130 51-98 (99)
27 2l5g_A GPS2 protein, G protein 24.6 86 0.003 16.6 3.5 30 86-115 7-36 (38)
28 1j1e_C Troponin I, TNI; THIN f 24.6 1E+02 0.0036 22.0 4.4 26 83-108 54-79 (180)
29 3sl9_C B-cell CLL/lymphoma 9 p 24.4 1E+02 0.0035 17.3 4.0 25 80-104 3-27 (55)
30 2phn_A F420-0:gamma-glutamyl l 23.8 9.3 0.00032 29.0 -1.4 29 27-55 138-166 (254)
31 2k1v_A Insulin-like peptide IN 23.2 24 0.00081 17.2 0.5 9 25-33 14-22 (26)
32 1lyp_A CAP18; lipopolysacchari 23.1 80 0.0027 15.6 4.0 25 90-114 4-28 (32)
33 3kp7_A Transcriptional regulat 22.9 1.1E+02 0.0039 19.6 4.2 33 79-111 117-149 (151)
34 4gip_A Fusion glycoprotein F2; 22.8 1.4E+02 0.0049 18.5 4.6 37 80-116 38-74 (81)
35 1tjl_A DNAK suppressor protein 22.1 1.8E+02 0.0063 19.9 5.2 31 83-113 28-58 (151)
36 2bw2_A Bypass of forespore C; 21.3 4.8 0.00016 27.9 -3.2 45 21-66 58-104 (140)
37 3gaa_A Uncharacterized protein 21.1 89 0.0031 23.1 3.6 30 87-116 214-243 (252)
38 3o0k_A Aldo/keto reductase; ss 20.3 1.5E+02 0.0053 22.0 4.9 35 34-68 203-237 (283)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=99.98 E-value=1.3e-34 Score=186.93 Aligned_cols=67 Identities=30% Similarity=0.512 Sum_probs=63.6
Q ss_pred CccccCCCCcccccccccchhhhhhhhhhhcccccEEEEeecCCCCCcccCCchhHHHHHHhhccch
Q 039494 1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRFLGLNC 67 (140)
Q Consensus 1 ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~vavivfsp~gk~~~~~spsv~~vi~ry~~~~~ 67 (140)
|++|+|+.+|+|||+|||.||||||.||||||||+||+|||||+|++|+|++|+++.|++||...++
T Consensus 7 ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~ 73 (77)
T 1egw_A 7 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE 73 (77)
T ss_dssp SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC--
T ss_pred eEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccC
Confidence 7899999999999999999999999999999999999999999999999999999999999987654
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=99.97 E-value=4.4e-34 Score=188.89 Aligned_cols=67 Identities=30% Similarity=0.512 Sum_probs=64.4
Q ss_pred CccccCCCCcccccccccchhhhhhhhhhhcccccEEEEeecCCCCCcccCCchhHHHHHHhhccch
Q 039494 1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRFLGLNC 67 (140)
Q Consensus 1 ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~vavivfsp~gk~~~~~spsv~~vi~ry~~~~~ 67 (140)
|++|+|+.+|+|||+|||.||||||.||||||||+||+|||||+|++|+|++|+|+.||+||...++
T Consensus 7 ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~ 73 (90)
T 3p57_A 7 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE 73 (90)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCS
T ss_pred eEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCc
Confidence 7899999999999999999999999999999999999999999999999999999999999987553
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=99.96 E-value=5.4e-32 Score=181.80 Aligned_cols=65 Identities=38% Similarity=0.568 Sum_probs=62.7
Q ss_pred CccccCCCCcccccccccchhhhhhhhhhhcccccEEEEeecCCCCCcccCCchhHHHHHHhhcc
Q 039494 1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRFLGL 65 (140)
Q Consensus 1 ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~vavivfsp~gk~~~~~spsv~~vi~ry~~~ 65 (140)
|++|+|+.+|+|||+|||.||||||.||||||||+||||||||+|++|+|++|+++.|+++|...
T Consensus 23 ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G~ 87 (100)
T 1mnm_A 23 IKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGR 87 (100)
T ss_dssp SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHH
T ss_pred eEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhCC
Confidence 78999999999999999999999999999999999999999999999999999999999999653
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=99.96 E-value=8.5e-32 Score=178.62 Aligned_cols=64 Identities=36% Similarity=0.516 Sum_probs=61.6
Q ss_pred CccccCCCCcccccccccchhhhhhhhhhhcccccEEEEeecCCCCCcccCCchhHHHHHHhhc
Q 039494 1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRFLG 64 (140)
Q Consensus 1 ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~vavivfsp~gk~~~~~spsv~~vi~ry~~ 64 (140)
|++|+|+.+|+|||+|||.||||||.||||||||+||||||||+|++|+|++|+++.+|++|..
T Consensus 17 ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~G 80 (92)
T 1hbx_A 17 MEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG 80 (92)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHH
T ss_pred EEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcc
Confidence 6899999999999999999999999999999999999999999999999999999999997754
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.96 E-value=3.7e-31 Score=178.73 Aligned_cols=64 Identities=36% Similarity=0.516 Sum_probs=61.2
Q ss_pred CccccCCCCcccccccccchhhhhhhhhhhcccccEEEEeecCCCCCcccCCchhHHHHHHhhc
Q 039494 1 MKKIENEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRFLG 64 (140)
Q Consensus 1 ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~vavivfsp~gk~~~~~spsv~~vi~ry~~ 64 (140)
|++|+|+.+|+|||+|||.||||||.||||||||+||||||||+|++|+|++|+++.+|+++..
T Consensus 16 ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~~G 79 (103)
T 1k6o_B 16 MEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG 79 (103)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSHHH
T ss_pred EEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhhhh
Confidence 6899999999999999999999999999999999999999999999999999999999997643
No 6
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=58.89 E-value=6.7 Score=24.78 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=31.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCCCCC
Q 039494 83 PVYEFNHQELLQMDATIDNLSRTFIAKLNEKTAAASSSAAPPMYFHHGLGS 133 (140)
Q Consensus 83 ~l~~ls~~eL~~l~~~Le~~l~~v~~r~~~l~~~~~~~~~~~~~~~~~~~~ 133 (140)
.+-.|+.+||.++.-..-..+++|-.-+..|..+. +.+|+| ++|+++
T Consensus 44 ~l~~lt~~DL~~lGI~~~GHrkkIl~ai~~L~~~~---~~~~~~-~~~~~~ 90 (91)
T 1x40_A 44 DCAAINDSLLQKIGISPTGHRRRILKQLQIILSKM---QDIPIY-ASGPSS 90 (91)
T ss_dssp GGGGCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHC---CCCCCC-CCCSCC
T ss_pred HHhhcCHHHHHHCCCCCHhHHHHHHHHHHHHHhhc---CCCCee-cCCCCC
Confidence 57788999999886655555666655666655543 445555 788764
No 7
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=55.13 E-value=27 Score=22.47 Aligned_cols=30 Identities=7% Similarity=0.234 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039494 87 FNHQELLQMDATIDNLSRTFIAKLNEKTAA 116 (140)
Q Consensus 87 ls~~eL~~l~~~Le~~l~~v~~r~~~l~~~ 116 (140)
++++|++.|...|+.-...+.+.+..|..+
T Consensus 6 ~dpeElr~Fa~~L~~F~d~Lq~~~~~L~~~ 35 (94)
T 3fx7_A 6 MDTEEVREFVGHLERFKELLREEVNSLSNH 35 (94)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999988887653
No 8
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=51.73 E-value=9.5 Score=27.12 Aligned_cols=36 Identities=17% Similarity=0.108 Sum_probs=24.9
Q ss_pred hhcccccEEEEeecCCCCCcc-cCCch-------hHHHHHHhhc
Q 039494 29 VTLTVSAIARLVFSQSGKPFS-FGNPS-------IEAVANRFLG 64 (140)
Q Consensus 29 s~LC~~~vavivfsp~gk~~~-~~sps-------v~~vi~ry~~ 64 (140)
+.-|++.|-+++|||+-+.|. |-.-+ +++|++.++.
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~Viq~~k~ 159 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQ 159 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHHHHHHHHH
Confidence 345999999999999988886 43322 3556655543
No 9
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=51.30 E-value=22 Score=17.60 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039494 90 QELLQMDATIDNLSRTFIAKLNEKTA 115 (140)
Q Consensus 90 ~eL~~l~~~Le~~l~~v~~r~~~l~~ 115 (140)
++|..|...|+..-+.+..++++|..
T Consensus 2 dqlnallasleaenkqlkakveella 27 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888887888888877653
No 10
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=44.65 E-value=37 Score=18.36 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=17.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 039494 85 YEFNHQELLQMDATIDNLSRTFIA 108 (140)
Q Consensus 85 ~~ls~~eL~~l~~~Le~~l~~v~~ 108 (140)
++.+++||..++..|..+-+.+..
T Consensus 15 egfspeelaaleselqalekklaa 38 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLAA 38 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 678999999988877665554433
No 11
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=43.48 E-value=38 Score=18.47 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039494 86 EFNHQELLQMDATIDNLSRTFIAKLNEKTA 115 (140)
Q Consensus 86 ~ls~~eL~~l~~~Le~~l~~v~~r~~~l~~ 115 (140)
+++-+||.+=.+.++.-...+.++++.+..
T Consensus 1 ~~tk~~l~qkI~kVdrEI~Kte~kI~~lqk 30 (42)
T 2l5g_B 1 GLSKEELIQNMDRVDREITMVEQQISKLKK 30 (42)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888888888888777776644
No 12
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=42.58 E-value=32 Score=22.56 Aligned_cols=28 Identities=11% Similarity=0.071 Sum_probs=21.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 039494 83 PVYEFNHQELLQMDATIDNLSRTFIAKL 110 (140)
Q Consensus 83 ~l~~ls~~eL~~l~~~Le~~l~~v~~r~ 110 (140)
++++|+.++|+++-..|-+.+..+.+-.
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEK 65 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEK 65 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 6899999999998888877766655444
No 13
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=42.50 E-value=14 Score=23.78 Aligned_cols=31 Identities=13% Similarity=0.355 Sum_probs=20.5
Q ss_pred ccccEEEEeecCCCCCcccCCch-hHHHHHHhh
Q 039494 32 TVSAIARLVFSQSGKPFSFGNPS-IEAVANRFL 63 (140)
Q Consensus 32 C~~~vavivfsp~gk~~~~~sps-v~~vi~ry~ 63 (140)
|+-.-.|+|+ |+|..|...+|+ +.+|++.+.
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e~v~~il~~~l 90 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPEDVDEIVEKHL 90 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGGGHHHHHHHTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHHHHHHHHHHHH
Confidence 4433344555 888777766764 899998864
No 14
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=41.85 E-value=44 Score=22.54 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh------hcCCCCCCCccccCCC
Q 039494 85 YEFNHQELLQMDATIDNLSRTFIAKLNEKTA------AASSSAAPPMYFHHGL 131 (140)
Q Consensus 85 ~~ls~~eL~~l~~~Le~~l~~v~~r~~~l~~------~~~~~~~~~~~~~~~~ 131 (140)
.+|+.+|+..+.-.+ .+..|..++..-.. ..-+.++||.|-.+|-
T Consensus 34 ~~Lt~eq~~ay~~~~--RieeIt~kL~~g~l~i~~~~~~RSPSPpP~Yd~~G~ 84 (124)
T 4fxw_B 34 PGLTREQERAYIVQL--QIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGK 84 (124)
T ss_dssp SSCCHHHHHHHHHHH--HHHHHHHHHHHCCCCCCSSTTSSCCCCCCCBCTTSC
T ss_pred CCCCHHHHHHHHHHh--hHHHHHHHHhcCCcCCCCCcccCCCCCCCccCcccc
Confidence 368999998876655 45555555543211 1226679999998884
No 15
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=41.55 E-value=33 Score=22.52 Aligned_cols=28 Identities=7% Similarity=0.045 Sum_probs=21.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 039494 83 PVYEFNHQELLQMDATIDNLSRTFIAKL 110 (140)
Q Consensus 83 ~l~~ls~~eL~~l~~~Le~~l~~v~~r~ 110 (140)
++++|+.++|+++-..|-+.+..+.+-.
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~lEeEK 65 (107)
T 1ytz_T 38 NIDHLNEDKLRDKAKELWDWLYQLQTEK 65 (107)
T ss_dssp CCSSSCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999998888877666654443
No 16
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=39.05 E-value=71 Score=21.74 Aligned_cols=29 Identities=7% Similarity=0.033 Sum_probs=22.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 039494 82 TPVYEFNHQELLQMDATIDNLSRTFIAKL 110 (140)
Q Consensus 82 ~~l~~ls~~eL~~l~~~Le~~l~~v~~r~ 110 (140)
-++++++.++|+++-..|-+.+..+.+-.
T Consensus 53 L~id~ls~~~L~e~~keLh~~I~~LEeEK 81 (133)
T 1j1d_C 53 LELAGLGFAELQDLARQLHARVDKVDEER 81 (133)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 36999999999998888877666554443
No 17
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=38.02 E-value=3.9 Score=27.03 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=29.6
Q ss_pred CCCCcccccccccchhhhhhhhhhhcccccEEEEeecCCCCCccc
Q 039494 6 NEDGRLITFSKRTSGIYRKVSELVTLTVSAIARLVFSQSGKPFSF 50 (140)
Q Consensus 6 n~~~R~~tf~KRr~gL~KKa~ELs~LC~~~vavivfsp~gk~~~~ 50 (140)
++.....||.=.-..|.++.-+|+.+| ++.|+|+|+-+-.
T Consensus 23 ~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~l 62 (106)
T 3nrf_A 23 DKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRL 62 (106)
T ss_dssp TEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEE
T ss_pred CeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEe
Confidence 334445666667778889999999665 8899999986653
No 18
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.52 E-value=89 Score=20.75 Aligned_cols=40 Identities=13% Similarity=0.079 Sum_probs=32.6
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 039494 81 ETPVYEFNHQELLQMDATIDNLSRTFIAKLNEKTAAASSS 120 (140)
Q Consensus 81 ~~~l~~ls~~eL~~l~~~Le~~l~~v~~r~~~l~~~~~~~ 120 (140)
+.+-.+-.-++.+.|...+...+..|++|+..|.....++
T Consensus 62 ~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le~~~~~~ 101 (116)
T 2dl1_A 62 ESEHTGPGWESARQMQQKMKETLQNVRTRLEILEKGLATS 101 (116)
T ss_dssp CTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3345566788999999999999999999999997766643
No 19
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=32.16 E-value=89 Score=19.14 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039494 90 QELLQMDATIDNLSRTFIAKLNEK 113 (140)
Q Consensus 90 ~eL~~l~~~Le~~l~~v~~r~~~l 113 (140)
..+.+|++.||.++-+|.+.--.+
T Consensus 35 ~~v~eLEdYID~LLvRVME~~P~i 58 (75)
T 3tso_C 35 THIRELEDYIDNLLVRVMEETPSI 58 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHH
Confidence 456677777777777776655443
No 20
>3rmq_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, zinc binding, unknown function; 1.85A {Saccharomonospora viridis} PDB: 3rms_A
Probab=29.97 E-value=11 Score=25.19 Aligned_cols=13 Identities=8% Similarity=0.148 Sum_probs=10.7
Q ss_pred hhhhhcccccEEE
Q 039494 26 SELVTLTVSAIAR 38 (140)
Q Consensus 26 ~ELs~LC~~~vav 38 (140)
..+.+|||++|..
T Consensus 30 ~~ftaLCG~~VTp 42 (116)
T 3rmq_A 30 RPFTALCGETVTP 42 (116)
T ss_dssp CCEECTTSCEECC
T ss_pred CccccccCCeecC
Confidence 4688999999874
No 21
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=28.39 E-value=96 Score=18.36 Aligned_cols=34 Identities=6% Similarity=0.139 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039494 82 TPVYEFNHQELLQMDATIDNLSRTFIAKLNEKTA 115 (140)
Q Consensus 82 ~~l~~ls~~eL~~l~~~Le~~l~~v~~r~~~l~~ 115 (140)
..+++++.+||.+.-..-++....+++.++.|+.
T Consensus 18 ae~~~~s~deL~~~l~eqee~n~~Le~YID~LL~ 51 (64)
T 2hv8_D 18 AEISSVSRDELMEAIQKQEEINFRLQDYIDRIIV 51 (64)
T ss_dssp TTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777776666666555566666666543
No 22
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=27.95 E-value=1.2e+02 Score=19.21 Aligned_cols=32 Identities=6% Similarity=0.122 Sum_probs=26.3
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 039494 81 ETPVYEFNHQELLQMDATIDNLSRTFIAKLNE 112 (140)
Q Consensus 81 ~~~l~~ls~~eL~~l~~~Le~~l~~v~~r~~~ 112 (140)
..-+++++.+|+..+...|+.....+.+.+++
T Consensus 109 ~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~~~ 140 (144)
T 1lj9_A 109 QVALQGLSEVEISQLADYLVRMRKNVSEDWEF 140 (144)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 34477899999999999999988888776655
No 23
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=26.66 E-value=4.6 Score=25.15 Aligned_cols=32 Identities=16% Similarity=0.144 Sum_probs=26.4
Q ss_pred hhhhhhhhhcccccEEEEeecCCCCCcccCCchhHHHHHHhhc
Q 039494 22 YRKVSELVTLTVSAIARLVFSQSGKPFSFGNPSIEAVANRFLG 64 (140)
Q Consensus 22 ~KKa~ELs~LC~~~vavivfsp~gk~~~~~spsv~~vi~ry~~ 64 (140)
.|+|+|.+.|++=+.|++.|.. +..-|++|..
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g-----------~~~qI~k~l~ 47 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQG-----------VLDQMNKYLY 47 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH-----------HHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHH-----------HHHHHHHHHH
Confidence 5899999999999999888876 6677777754
No 24
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=26.42 E-value=15 Score=17.72 Aligned_cols=12 Identities=25% Similarity=0.260 Sum_probs=8.1
Q ss_pred CCcccccccccc
Q 039494 8 DGRLITFSKRTS 19 (140)
Q Consensus 8 ~~R~~tf~KRr~ 19 (140)
+.|++-|.||++
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 457777777763
No 25
>2bsj_A Chaperone protein SYCT; type III secretion, effector, YOPT; 1.83A {Yersinia enterocolitica} PDB: 2bho_A 2bsh_A 2bsi_A
Probab=25.35 E-value=55 Score=21.83 Aligned_cols=45 Identities=7% Similarity=0.263 Sum_probs=28.5
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 039494 79 WWETPVYEFNHQELLQMDATIDNLSRTFIAKLNEKTAAASSSAAPPMY 126 (140)
Q Consensus 79 ~~~~~l~~ls~~eL~~l~~~Le~~l~~v~~r~~~l~~~~~~~~~~~~~ 126 (140)
|-..++..+++++|+. =+|..+..+..|+.-...+..-.++|+++
T Consensus 87 WSQqpl~~ldvaelqA---WlErFIdDieqr~~p~~t~~~~n~~~~~~ 131 (133)
T 2bsj_A 87 WSQQSLVGLDIDEMQA---WLERFIDDIEQRKEPQNTKFQPNSTSPIL 131 (133)
T ss_dssp EEEEESTTCCHHHHHH---HHHHHHHHHHHHTSGGGGSCCCCCCSCCC
T ss_pred EecCccccccHHHHHH---HHHHHHHHHHHhcCCccccCCCCCCCCcc
Confidence 3456799999988765 45566667777776544444444555543
No 26
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.89 E-value=96 Score=19.45 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=30.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccCC
Q 039494 83 PVYEFNHQELLQMDATIDNLSRTFIAKLNEKTAAASSSAAPPMYFHHG 130 (140)
Q Consensus 83 ~l~~ls~~eL~~l~~~Le~~l~~v~~r~~~l~~~~~~~~~~~~~~~~~ 130 (140)
.+-.|+.++|.++.-..-.-+++|-.-+..+........++.+-..||
T Consensus 51 ~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~l~~~~~~~~~~~~~~~~~ 98 (99)
T 2eao_A 51 LVTQMTSEDLLRIGITLAGHQKKILNSIHSMRVQISQSPTAMASGPSS 98 (99)
T ss_dssp HHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHSSCCCCCSCSCSCC
T ss_pred HHhhCCHHHHHHCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Confidence 456789999998866555566666666666666555555554444443
No 27
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.64 E-value=86 Score=16.55 Aligned_cols=30 Identities=3% Similarity=-0.043 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039494 86 EFNHQELLQMDATIDNLSRTFIAKLNEKTA 115 (140)
Q Consensus 86 ~ls~~eL~~l~~~Le~~l~~v~~r~~~l~~ 115 (140)
.++++|.++-...|+..+..+++.+.+|-.
T Consensus 7 ~mTLeEtkeQi~~l~~kl~~LkeEKHQLFl 36 (38)
T 2l5g_A 7 RMSLEETKEQILKLEEKLLALQEEKHQLFL 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777778888888887777643
No 28
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=24.60 E-value=1e+02 Score=22.01 Aligned_cols=26 Identities=8% Similarity=0.066 Sum_probs=20.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Q 039494 83 PVYEFNHQELLQMDATIDNLSRTFIA 108 (140)
Q Consensus 83 ~l~~ls~~eL~~l~~~Le~~l~~v~~ 108 (140)
++++|+.++|+++-..|-+.+..+.+
T Consensus 54 nid~Lse~~L~e~ckELh~~I~~LEe 79 (180)
T 1j1e_C 54 ELAGLGFAELQDLARQLHARVDKVDE 79 (180)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999888777666555433
No 29
>3sl9_C B-cell CLL/lymphoma 9 protein; armadillo repeat, components of the WNT signaling pathway, B catenin, signaling protein, protein binding; 2.20A {Homo sapiens} PDB: 2gl7_C
Probab=24.39 E-value=1e+02 Score=17.26 Aligned_cols=25 Identities=8% Similarity=0.157 Sum_probs=17.9
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHH
Q 039494 80 WETPVYEFNHQELLQMDATIDNLSR 104 (140)
Q Consensus 80 ~~~~l~~ls~~eL~~l~~~Le~~l~ 104 (140)
++++-++|+.++|+.-+..|..+..
T Consensus 3 ~~~n~~gls~eqlehrerslqtlrd 27 (55)
T 3sl9_C 3 LGENPDGLSQEQLEHRERSLQTLRD 27 (55)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHHH
T ss_pred cccCCcccCHHHHHHHHHHHHHHHH
Confidence 4678899999999999888876654
No 30
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide BON enzyme, metal dependent, NEW fold, GDP binding, MCSG; HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} SCOP: d.340.1.1 PDB: 2g9i_A
Probab=23.79 E-value=9.3 Score=29.03 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=23.0
Q ss_pred hhhhcccccEEEEeecCCCCCcccCCchh
Q 039494 27 ELVTLTVSAIARLVFSQSGKPFSFGNPSI 55 (140)
Q Consensus 27 ELs~LC~~~vavivfsp~gk~~~~~spsv 55 (140)
+|.-.+|++|+|||+.+.|+++..+.+.+
T Consensus 138 ~l~~~~G~~v~ViI~Dt~gr~~r~g~~~v 166 (254)
T 2phn_A 138 RILELTGKRVGVIITDTNGRCFRRGVVGF 166 (254)
T ss_dssp HHHHHHSCCCEEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHCCCEEEEEEcCCCchhhccCccc
Confidence 34466899999999999998887776553
No 31
>2k1v_A Insulin-like peptide INSL5; peptide hormone, relaxin-3, chimera, cleavage on PAIR of basic residues, secreted, signaling protein; HET: PCA; NMR {Synthetic} PDB: 2kbc_A*
Probab=23.16 E-value=24 Score=17.21 Aligned_cols=9 Identities=22% Similarity=0.487 Sum_probs=6.8
Q ss_pred hhhhhhccc
Q 039494 25 VSELVTLTV 33 (140)
Q Consensus 25 a~ELs~LC~ 33 (140)
.+||+.||.
T Consensus 14 msDLs~lC~ 22 (26)
T 2k1v_A 14 MTDLSALCX 22 (26)
T ss_dssp HHHHTTTC-
T ss_pred HHHHHHHHh
Confidence 479999995
No 32
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=23.13 E-value=80 Score=15.60 Aligned_cols=25 Identities=12% Similarity=0.123 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039494 90 QELLQMDATIDNLSRTFIAKLNEKT 114 (140)
Q Consensus 90 ~eL~~l~~~Le~~l~~v~~r~~~l~ 114 (140)
.-|+.+...+.+.++.|.+++.-|.
T Consensus 4 krlrkfrnkikeklkkigqkiqgll 28 (32)
T 1lyp_A 4 KRLRKFRNKIKEKLKKIGQKIQGLL 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3467788888888888888876654
No 33
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=22.88 E-value=1.1e+02 Score=19.64 Aligned_cols=33 Identities=6% Similarity=0.119 Sum_probs=26.1
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 039494 79 WWETPVYEFNHQELLQMDATIDNLSRTFIAKLN 111 (140)
Q Consensus 79 ~~~~~l~~ls~~eL~~l~~~Le~~l~~v~~r~~ 111 (140)
+...-+++++.+|+..+...|+.....+.+..+
T Consensus 117 ~~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~~ 149 (151)
T 3kp7_A 117 IASDMTSDFDSKEIEKVRQVLEIIDYRIQSYTS 149 (151)
T ss_dssp HHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567889999999999999988887766443
No 34
>4gip_A Fusion glycoprotein F2; PIV5, viral fusion protein, membrane fusion, protease cleava activated form, ectodomain, trimer; HET: NAG; 2.00A {Simian virus 5}
Probab=22.85 E-value=1.4e+02 Score=18.46 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=32.5
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039494 80 WETPVYEFNHQELLQMDATIDNLSRTFIAKLNEKTAA 116 (140)
Q Consensus 80 ~~~~l~~ls~~eL~~l~~~Le~~l~~v~~r~~~l~~~ 116 (140)
.+.++++++..++.+....|...+.=+++-++.+..+
T Consensus 38 i~~~~~~C~~~~v~~Ynktlt~lL~Pi~daL~~I~~~ 74 (81)
T 4gip_A 38 IDSPISGCNITSISSYNATVTKLLQPIGENLETIRNQ 74 (81)
T ss_dssp CCSCBCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3457899999999999999999999999999887664
No 35
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=22.09 E-value=1.8e+02 Score=19.85 Aligned_cols=31 Identities=6% Similarity=0.132 Sum_probs=24.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039494 83 PVYEFNHQELLQMDATIDNLSRTFIAKLNEK 113 (140)
Q Consensus 83 ~l~~ls~~eL~~l~~~Le~~l~~v~~r~~~l 113 (140)
.-+-|+.++|..|...|...+..+.+.+...
T Consensus 28 ~e~~M~~~ql~~fr~~L~~~k~eL~~~l~~~ 58 (151)
T 1tjl_A 28 GEEYMNEAQLAHFRRILEAWRNQLRDEVDRT 58 (151)
T ss_dssp TCCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888999999999988888887777554
No 36
>2bw2_A Bypass of forespore C; sporulation, signaling protein, BOFC, sigmak checkpoint; NMR {Bacillus subtilis}
Probab=21.29 E-value=4.8 Score=27.93 Aligned_cols=45 Identities=16% Similarity=0.302 Sum_probs=31.7
Q ss_pred hhhhhhhhhhcccccEEEEeecCCCCCccc-CCchhH-HHHHHhhccc
Q 039494 21 IYRKVSELVTLTVSAIARLVFSQSGKPFSF-GNPSIE-AVANRFLGLN 66 (140)
Q Consensus 21 L~KKa~ELs~LC~~~vavivfsp~gk~~~~-~spsv~-~vi~ry~~~~ 66 (140)
+-|++.+||-+|....= +-.+.+|.+..| |.|.-+ .||..|-..+
T Consensus 58 ~~k~VdDisP~~K~ngY-~Gi~~dG~LslF~G~P~~~~kvI~sffqId 104 (140)
T 2bw2_A 58 FRKQMDDISPLSKVNGY-IGVSDNGVISTFHGRPEPASEPIQSFFQID 104 (140)
T ss_dssp EEEECSSCCTGGGTCCC-EEEETTTEEEEBSSSCSTTSCBSCCCCCCC
T ss_pred EEEEccccChHHhcCce-EEEecCCeEEEEeCCCccCcceeeeeeccC
Confidence 35678899999987743 445567877776 467766 7888885554
No 37
>3gaa_A Uncharacterized protein TA1441; the protein with unknown function from thermoplasma acidophi structural genomics,PSI, MCSG; 2.70A {Thermoplasma acidophilum}
Probab=21.11 E-value=89 Score=23.09 Aligned_cols=30 Identities=10% Similarity=0.094 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039494 87 FNHQELLQMDATIDNLSRTFIAKLNEKTAA 116 (140)
Q Consensus 87 ls~~eL~~l~~~Le~~l~~v~~r~~~l~~~ 116 (140)
++.++|.+-.+.++..++.+.+++.+...+
T Consensus 214 i~~~~L~e~Ae~~e~~i~~l~e~~~~~~~~ 243 (252)
T 3gaa_A 214 IKTDLLEEQVKALDEQIKKIEEQYKELQEK 243 (252)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456778888888888888888888875544
No 38
>3o0k_A Aldo/keto reductase; ssgcid, ALS collaborative crystallography; 1.80A {Brucella melitensis biovar}
Probab=20.28 E-value=1.5e+02 Score=21.97 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=26.5
Q ss_pred ccEEEEeecCCCCCcccCCchhHHHHHHhhccchH
Q 039494 34 SAIARLVFSQSGKPFSFGNPSIEAVANRFLGLNCQ 68 (140)
Q Consensus 34 ~~vavivfsp~gk~~~~~spsv~~vi~ry~~~~~~ 68 (140)
-.|.++.|||-+....+..|.+.++.++|...+..
T Consensus 203 ~gi~v~a~spL~~G~l~~~~~l~~ia~~~g~t~aq 237 (283)
T 3o0k_A 203 HDIATEAWSPLGQGKLLEDPTLKSIAEKHAKSVAQ 237 (283)
T ss_dssp TTCEEEEESTTCCC-CTTCHHHHHHHHHHTSCHHH
T ss_pred CCcEEEEecCCCCCccccchHHHHHHHHhCCCHHH
Confidence 36788999999876667778889999998655444
Done!