Query 039495
Match_columns 327
No_of_seqs 237 out of 1319
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 17:36:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039495.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039495hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u3g_D Ribonuclease H, RNAse H 99.9 1.7E-24 6E-29 180.2 13.7 129 167-295 3-137 (140)
2 3hst_B Protein RV2228C/MT2287; 99.9 1.5E-24 5.3E-29 181.4 13.3 130 167-296 3-134 (141)
3 2ehg_A Ribonuclease HI; RNAse 99.9 3E-23 1E-27 176.0 13.5 129 167-297 1-136 (149)
4 2qkb_A Ribonuclease H1, HS-RNA 99.8 1.6E-20 5.4E-25 160.4 14.3 131 162-296 2-152 (154)
5 3qio_A GAG-POL polyprotein; RN 99.8 1E-19 3.5E-24 155.3 12.3 125 162-295 7-147 (150)
6 1ril_A Ribonuclease H; hydrola 99.8 5.3E-20 1.8E-24 159.5 10.0 132 161-297 2-150 (166)
7 3h08_A RNH (ribonuclease H); R 99.8 1.2E-19 4.1E-24 153.4 10.6 125 167-296 4-145 (146)
8 1jl1_A Ribonuclease HI; RNAse 99.8 5.1E-19 1.8E-23 151.4 11.2 126 167-297 4-145 (155)
9 2e4l_A Ribonuclease HI, RNAse 99.8 8.5E-19 2.9E-23 150.6 11.0 125 166-295 5-145 (158)
10 3p1g_A Xenotropic murine leuke 99.7 4.3E-17 1.5E-21 141.2 15.0 135 158-297 14-158 (165)
11 2lsn_A Reverse transcriptase; 99.7 4.6E-17 1.6E-21 141.1 13.1 127 167-294 7-162 (165)
12 2kq2_A Ribonuclease H-related 99.7 1.1E-17 3.6E-22 142.2 7.1 127 164-297 3-139 (147)
13 1zbf_A Ribonuclease H-related 99.6 3.5E-16 1.2E-20 132.3 7.5 102 161-265 5-111 (142)
14 1mu2_A HIV-2 RT; HIV-2 reverse 99.6 1.2E-14 4E-19 147.7 11.8 122 161-293 430-555 (555)
15 2zd1_A Reverse transcriptase/r 99.5 1.1E-14 3.9E-19 147.8 8.5 121 161-292 433-557 (557)
16 4htu_A Ribonuclease H, RNAse H 99.5 8.2E-14 2.8E-18 116.3 7.4 96 167-265 5-105 (134)
17 1uwz_A Cytidine deaminase; CDD 69.5 11 0.00037 30.6 6.4 56 182-238 23-79 (136)
18 2fr5_A Cytidine deaminase; tet 65.5 13 0.00043 30.7 6.1 56 182-238 35-91 (146)
19 2z3g_A Blasticidin-S deaminase 65.3 13 0.00043 29.9 6.0 54 183-238 27-80 (130)
20 1rw3_A POL polyprotein; RNA an 61.2 4.1 0.00014 39.4 2.7 75 168-249 347-429 (455)
21 2d30_A Cytidine deaminase; pur 45.3 45 0.0016 27.1 6.2 56 183-239 33-89 (141)
22 1r5t_A Cytidine deaminase; zin 42.1 46 0.0016 27.0 5.8 56 182-238 31-88 (142)
23 2zd1_B P51 RT; P51/P66, hetero 34.8 74 0.0025 30.3 6.9 72 167-243 324-401 (428)
24 3mpz_A Cytidine deaminase; ssg 30.6 75 0.0026 26.2 5.2 54 183-237 46-100 (150)
25 3r2n_A Cytidine deaminase; str 28.6 84 0.0029 25.4 5.2 53 184-237 32-85 (138)
26 3dmo_A Cytidine deaminase; str 26.1 1.5E+02 0.005 24.0 6.2 55 183-238 32-89 (138)
27 2nx8_A TRNA-specific adenosine 25.7 42 0.0014 28.3 3.0 38 185-223 38-77 (179)
28 3b8f_A Putative blasticidin S 25.1 98 0.0034 24.9 5.0 54 184-238 24-78 (142)
29 3ugs_B Undecaprenyl pyrophosph 23.4 1E+02 0.0035 27.1 5.1 48 187-236 11-58 (225)
30 1wwr_A TRNA adenosine deaminas 22.4 53 0.0018 27.5 2.9 52 184-236 44-97 (171)
31 3oj6_A Blasticidin-S deaminase 22.4 1.7E+02 0.0059 24.1 6.0 53 183-237 51-103 (158)
32 3dh1_A TRNA-specific adenosine 22.1 55 0.0019 27.9 3.0 39 185-224 48-88 (189)
33 2a8n_A Cytidine and deoxycytid 22.1 45 0.0015 26.9 2.3 40 184-224 25-66 (144)
34 2b3j_A TRNA adenosine deaminas 21.1 60 0.0021 26.6 3.0 52 184-236 28-81 (159)
35 2g84_A Cytidine and deoxycytid 20.0 1.4E+02 0.0047 25.4 5.1 39 185-223 50-91 (197)
No 1
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.92 E-value=1.7e-24 Score=180.22 Aligned_cols=129 Identities=20% Similarity=0.185 Sum_probs=117.3
Q ss_pred cEEEEEeeeecCCCCceeEEEEEEcCCCceEeccccccCCccchHHHHHHHHHhhHHHHhhCce----EEEEEEccHhhH
Q 039495 167 WVKLNIEGSSSRAQGSAGAGGIVRDESGKWILGYSKNLGTSNSLASELWALYHGLNLVWERGFR----KVLVECNSHEAV 242 (327)
Q Consensus 167 ~lK~NvDgS~~~~~~~aG~G~ViRD~~G~~l~~~~~~~~~~s~~~AE~~Al~~AL~~A~~~g~~----~Vi~EsDS~~VV 242 (327)
.+++|||||+.++++.+|+|+++++++|..+...+...+..|+++||++|+++||+.|.+.+.+ +|+|+|||++++
T Consensus 3 ~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~vi 82 (140)
T 3u3g_D 3 KIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIGETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELIV 82 (140)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEEEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHHH
T ss_pred eEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCCCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHHH
Confidence 4899999999999999999999999999988777766667899999999999999999999999 999999999999
Q ss_pred HhhcCCCCCC-CchhhhHHHHHHH-hccCCccceeeccCcccHHHHHHHHHHhhC
Q 039495 243 KCLELPASFL-DPNRALILSCREY-LCRNWDCKLQLILREANSCANWLAAHCENQ 295 (327)
Q Consensus 243 ~~i~~~~~~~-s~~~~li~eI~~l-l~~f~~v~~~hI~R~~N~~AD~LAk~A~~~ 295 (327)
+++++.+... ..+..++.+|+++ +.+|..+.|.||+|++|+.||.||+.|+..
T Consensus 83 ~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~~~N~~AD~LA~~a~~~ 137 (140)
T 3u3g_D 83 RQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPREKNARADELVNEAIDK 137 (140)
T ss_dssp HHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCGGGGHHHHHHHHHHHHH
T ss_pred HHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCchhhHHHHHHHHHHHHh
Confidence 9999976433 3567789999999 888999999999999999999999999864
No 2
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.92 E-value=1.5e-24 Score=181.36 Aligned_cols=130 Identities=18% Similarity=0.189 Sum_probs=116.2
Q ss_pred cEEEEEeeeecCCCCceeEEEEEEcCC-CceEeccccccCCccchHHHHHHHHHhhHHHHhhCceEEEEEEccHhhHHhh
Q 039495 167 WVKLNIEGSSSRAQGSAGAGGIVRDES-GKWILGYSKNLGTSNSLASELWALYHGLNLVWERGFRKVLVECNSHEAVKCL 245 (327)
Q Consensus 167 ~lK~NvDgS~~~~~~~aG~G~ViRD~~-G~~l~~~~~~~~~~s~~~AE~~Al~~AL~~A~~~g~~~Vi~EsDS~~VV~~i 245 (327)
.+++|||||+.++++.+|+|+++++++ |.++...+...+..|+++||++|++.||+++.+.|.++|+|+|||+++++++
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~i 82 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQM 82 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCCCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHHH
Confidence 379999999999999999999999987 6776666666677899999999999999999999999999999999999999
Q ss_pred cCCCCCC-CchhhhHHHHHHHhccCCccceeeccCcccHHHHHHHHHHhhCC
Q 039495 246 ELPASFL-DPNRALILSCREYLCRNWDCKLQLILREANSCANWLAAHCENQP 296 (327)
Q Consensus 246 ~~~~~~~-s~~~~li~eI~~ll~~f~~v~~~hI~R~~N~~AD~LAk~A~~~~ 296 (327)
++.+... ..+..++.+|+.++..|..+.|.||+|++|..||.||+.|+...
T Consensus 83 ~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~~~N~~AD~LA~~a~~~~ 134 (141)
T 3hst_B 83 SGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADRLANDAMDAA 134 (141)
T ss_dssp TTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCGGGCHHHHHHHHHHHHHH
T ss_pred hCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCCcccHHHHHHHHHHHHHh
Confidence 9975433 34667888999999989999999999999999999999998743
No 3
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.90 E-value=3e-23 Score=176.03 Aligned_cols=129 Identities=16% Similarity=0.113 Sum_probs=113.0
Q ss_pred cEEEEEeeeec-CCCCceeE-EEEEEcCCCceEeccccccC----CccchHHHHHHHHHhhHHHHhhCceEEEEEEccHh
Q 039495 167 WVKLNIEGSSS-RAQGSAGA-GGIVRDESGKWILGYSKNLG----TSNSLASELWALYHGLNLVWERGFRKVLVECNSHE 240 (327)
Q Consensus 167 ~lK~NvDgS~~-~~~~~aG~-G~ViRD~~G~~l~~~~~~~~----~~s~~~AE~~Al~~AL~~A~~~g~~~Vi~EsDS~~ 240 (327)
++++|||||+. ++++.+|+ |+++++ +|..+..++...+ ..|+++||++|++.||+.|.+.|.++|+|+|||++
T Consensus 1 m~~iy~DGs~~~~n~g~~G~~G~vi~~-~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~ 79 (149)
T 2ehg_A 1 MIIGYFDGLCEPKNPGGIATFGFVIYL-DNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQL 79 (149)
T ss_dssp CCEEEEEEEEESSSSSSEEEEEEEEEC-SSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHH
T ss_pred CEEEEEeeccCCCCCChheEEEEEEEE-CCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHH
Confidence 47999999999 79999997 999999 8888765544443 67999999999999999999999999999999999
Q ss_pred hHHhhcCCCCCC-CchhhhHHHHHHHhccCCccceeeccCcccHHHHHHHHHHhhCCC
Q 039495 241 AVKCLELPASFL-DPNRALILSCREYLCRNWDCKLQLILREANSCANWLAAHCENQPL 297 (327)
Q Consensus 241 VV~~i~~~~~~~-s~~~~li~eI~~ll~~f~~v~~~hI~R~~N~~AD~LAk~A~~~~~ 297 (327)
+++++++.+... ..+..++++++.++..| .+.|.||+|+.|..||.||+.|.....
T Consensus 80 vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~~~N~~AD~LA~~a~~~~~ 136 (149)
T 2ehg_A 80 VIKQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPREENKEADRLSRVAYELVR 136 (149)
T ss_dssp HHHHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCCcccHHHHHHHHHHHHhhc
Confidence 999999975432 35778999999999888 699999999999999999999987543
No 4
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.84 E-value=1.6e-20 Score=160.45 Aligned_cols=131 Identities=15% Similarity=0.084 Sum_probs=107.5
Q ss_pred CCCCCcEEEEEeeeecCCCC---ceeEEEEEEcCCCceEecccccc-CCccchHHHHHHHHHhhHHHHhhCceEEEEEEc
Q 039495 162 PPPTNWVKLNIEGSSSRAQG---SAGAGGIVRDESGKWILGYSKNL-GTSNSLASELWALYHGLNLVWERGFRKVLVECN 237 (327)
Q Consensus 162 ~P~~g~lK~NvDgS~~~~~~---~aG~G~ViRD~~G~~l~~~~~~~-~~~s~~~AE~~Al~~AL~~A~~~g~~~Vi~EsD 237 (327)
+|+.+++++|||||+.++++ .+|+|+++++..+..+. ..+ +..|++.||++|++.||+.+.+.+.++|+|+||
T Consensus 2 ~~~~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~---~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tD 78 (154)
T 2qkb_A 2 SHMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVG---IRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTN 78 (154)
T ss_dssp CEETTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEE---EECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CCCCCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEE---eecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 56778999999999998765 48999999986554332 223 357999999999999999999999999999999
Q ss_pred cHhhHHhhcC--------CCC----CCCchhhhHHHHHHHhccCCccceeeccCc----ccHHHHHHHHHHhhCC
Q 039495 238 SHEAVKCLEL--------PAS----FLDPNRALILSCREYLCRNWDCKLQLILRE----ANSCANWLAAHCENQP 296 (327)
Q Consensus 238 S~~VV~~i~~--------~~~----~~s~~~~li~eI~~ll~~f~~v~~~hI~R~----~N~~AD~LAk~A~~~~ 296 (327)
|+++++.|++ .+. .+..+..++++|..++..+ .+.|.||+++ .|+.||.||+.|+...
T Consensus 79 S~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~~-~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 79 SMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGM-DIQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp CHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTTC-EEEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred cHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHcCC-ceEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 9999999987 111 2234567899999988865 5999999985 5999999999998753
No 5
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.81 E-value=1e-19 Score=155.31 Aligned_cols=125 Identities=18% Similarity=0.153 Sum_probs=103.5
Q ss_pred CCCCCcEEEEEeeeecCCCCceeEEEEEEcCCCceEeccccccCCccchHHHHHHHHHhhHHHHhhCceEEEEEEccHhh
Q 039495 162 PPPTNWVKLNIEGSSSRAQGSAGAGGIVRDESGKWILGYSKNLGTSNSLASELWALYHGLNLVWERGFRKVLVECNSHEA 241 (327)
Q Consensus 162 ~P~~g~lK~NvDgS~~~~~~~aG~G~ViRD~~G~~l~~~~~~~~~~s~~~AE~~Al~~AL~~A~~~g~~~Vi~EsDS~~V 241 (327)
.|+.+.+++|||||+.++++.+|+|+|+++..+..+ ..+..|++.||++|++.||+.+ + .+|.|+|||+++
T Consensus 7 ~P~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~-----~~~~~Tnn~aEl~A~i~AL~~~---~-~~v~i~tDS~~v 77 (150)
T 3qio_A 7 EPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVV-----TLTDTTNQKTELQAIYLALQDS---G-LEVNIVTDSQYA 77 (150)
T ss_dssp SCCTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEE-----EESSCCHHHHHHHHHHHHHHHS---C-SEEEEEESCHHH
T ss_pred CCCCCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEE-----eCCCCCHHHHHHHHHHHHHHhC---C-CcEEEEeCcHHH
Confidence 578899999999999999999999999998654332 2456799999999999999974 3 899999999999
Q ss_pred HHhhcCC------------CCCCCchhhhHHHHHHHhccCCccceeeccCcc----cHHHHHHHHHHhhC
Q 039495 242 VKCLELP------------ASFLDPNRALILSCREYLCRNWDCKLQLILREA----NSCANWLAAHCENQ 295 (327)
Q Consensus 242 V~~i~~~------------~~~~s~~~~li~eI~~ll~~f~~v~~~hI~R~~----N~~AD~LAk~A~~~ 295 (327)
++.+++- ...+.....+++++.+++.++..+.|.||+++. |+.||.||+.|+..
T Consensus 78 ~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 78 LGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 9999862 112234567888888877788899999999998 99999999999865
No 6
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.81 E-value=5.3e-20 Score=159.52 Aligned_cols=132 Identities=19% Similarity=0.148 Sum_probs=105.0
Q ss_pred cCCCCCcEEEEEeeeecCCCCceeEEEEEEcCCCceEeccccccCCccchHHHHHHHHHhhHHHHhhCceEEEEEEccHh
Q 039495 161 MPPPTNWVKLNIEGSSSRAQGSAGAGGIVRDESGKWILGYSKNLGTSNSLASELWALYHGLNLVWERGFRKVLVECNSHE 240 (327)
Q Consensus 161 ~~P~~g~lK~NvDgS~~~~~~~aG~G~ViRD~~G~~l~~~~~~~~~~s~~~AE~~Al~~AL~~A~~~g~~~Vi~EsDS~~ 240 (327)
+||+.+.+++|||||+.++++.+|+|+|+++..+.... +...+..|++.||++|++.||+.+.+. .+|.|+|||++
T Consensus 2 ~p~~m~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~--~~~~~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~ 77 (166)
T 1ril_A 2 NPSPRKRVALFTDGACLGNPGPGGWAALLRFHAHEKLL--SGGEACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHY 77 (166)
T ss_dssp ----CCCCCEEEEEEESSTTEEEEEEEEECBTTBCCEE--CCEEEEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHH
T ss_pred CCCCCccEEEEECccccCCCCCEEEEEEEEECCEEEEE--ecCCCCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHH
Confidence 46777889999999999999999999999986554332 222345699999999999999988775 48999999999
Q ss_pred hHHhhcCC---------CC----CCCchhhhHHHHHHHhccCCccceeecc----CcccHHHHHHHHHHhhCCC
Q 039495 241 AVKCLELP---------AS----FLDPNRALILSCREYLCRNWDCKLQLIL----REANSCANWLAAHCENQPL 297 (327)
Q Consensus 241 VV~~i~~~---------~~----~~s~~~~li~eI~~ll~~f~~v~~~hI~----R~~N~~AD~LAk~A~~~~~ 297 (327)
+++.|++. +. .+.....+++++..++..+ .+.|.||+ |+.|..||.||+.|+....
T Consensus 78 vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~~-~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 78 LKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPH-RVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp HHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTS-EEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred HHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHhcC-eEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 99999982 21 1223456899999988764 88899888 8899999999999998655
No 7
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.80 E-value=1.2e-19 Score=153.43 Aligned_cols=125 Identities=19% Similarity=0.106 Sum_probs=103.2
Q ss_pred cEEEEEeeeecCCCCceeEEEEEEcCCCceEeccccccCCccchHHHHHHHHHhhHHHHhhCceEEEEEEccHhhHHhhc
Q 039495 167 WVKLNIEGSSSRAQGSAGAGGIVRDESGKWILGYSKNLGTSNSLASELWALYHGLNLVWERGFRKVLVECNSHEAVKCLE 246 (327)
Q Consensus 167 ~lK~NvDgS~~~~~~~aG~G~ViRD~~G~~l~~~~~~~~~~s~~~AE~~Al~~AL~~A~~~g~~~Vi~EsDS~~VV~~i~ 246 (327)
.+++|||||+.++++.+|+|+++++... ....+...+..|++.||+.|++.||+.+.+ ..+|.|+|||+++++.++
T Consensus 4 ~i~iytDGs~~~n~g~~g~G~v~~~~~~--~~~~~~~~~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 79 (146)
T 3h08_A 4 TITIYTDGAASGNPGKGGWGALLMYGSS--RKEISGYDPATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMN 79 (146)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEEETTE--EEEEEEEEEEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHH
T ss_pred eEEEEEecCCCCCCCceEEEEEEEECCe--eEEeecCCCCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHH
Confidence 4899999999999999999999998643 233344445679999999999999999986 589999999999999999
Q ss_pred CC-------------CCCCCchhhhHHHHHHHhccCCccceeecc----CcccHHHHHHHHHHhhCC
Q 039495 247 LP-------------ASFLDPNRALILSCREYLCRNWDCKLQLIL----REANSCANWLAAHCENQP 296 (327)
Q Consensus 247 ~~-------------~~~~s~~~~li~eI~~ll~~f~~v~~~hI~----R~~N~~AD~LAk~A~~~~ 296 (327)
+. ...+.....+++++..++..+ .+.|.||+ |+.|+.||.||+.|+...
T Consensus 80 ~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~~-~v~~~~V~gH~g~~~N~~AD~LA~~a~~~~ 145 (146)
T 3h08_A 80 EGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTLH-RVTFHKVKGHSDNPYNSRADELARLAIKEN 145 (146)
T ss_dssp SSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHHS-EEEEEECCC-CCSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhhC-ceEEEEcCCcCCcHhHHHHHHHHHHHHHhC
Confidence 82 122334567999999988865 68889998 999999999999998643
No 8
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.78 E-value=5.1e-19 Score=151.45 Aligned_cols=126 Identities=20% Similarity=0.160 Sum_probs=103.2
Q ss_pred cEEEEEeeeecCCCCceeEEEEEEcCCCceEeccccccCCccchHHHHHHHHHhhHHHHhhCceEEEEEEccHhhHHhhc
Q 039495 167 WVKLNIEGSSSRAQGSAGAGGIVRDESGKWILGYSKNLGTSNSLASELWALYHGLNLVWERGFRKVLVECNSHEAVKCLE 246 (327)
Q Consensus 167 ~lK~NvDgS~~~~~~~aG~G~ViRD~~G~~l~~~~~~~~~~s~~~AE~~Al~~AL~~A~~~g~~~Vi~EsDS~~VV~~i~ 246 (327)
.+++|||||+.++++.+|+|+++++..+... .+...+..|++.||+.|++.||+.+.+. .+|.|+|||+++++.|+
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~--~~~~~~~~tn~~aEl~A~~~aL~~~~~~--~~v~I~tDS~~vi~~i~ 79 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGREKT--FSAGYTRTTNNRMELMAAIVALEALKEH--AEVILSTDSQYVRQGIT 79 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEE--EEEEEEEECHHHHHHHHHHHHHHTCCSC--CEEEEEECCHHHHHHHH
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCeEEE--EecCCCCCcHHHHHHHHHHHHHHHhCcC--CcEEEEeCHHHHHHHHH
Confidence 4899999999999999999999998665432 2233455699999999999999999864 89999999999999999
Q ss_pred C--------CCC----CCCchhhhHHHHHHHhccCCccceeecc----CcccHHHHHHHHHHhhCCC
Q 039495 247 L--------PAS----FLDPNRALILSCREYLCRNWDCKLQLIL----REANSCANWLAAHCENQPL 297 (327)
Q Consensus 247 ~--------~~~----~~s~~~~li~eI~~ll~~f~~v~~~hI~----R~~N~~AD~LAk~A~~~~~ 297 (327)
+ .+. .+.....+++++..++.. ..+.|.||+ |++|..||.||+.|...+.
T Consensus 80 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~-~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 145 (155)
T 1jl1_A 80 QWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ-HQIKWEWVKGHAGHPENERADELARAAAMNPT 145 (155)
T ss_dssp TTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTT-CEEEEEECCSSTTCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHhhcccccccCCccCCHHHHHHHHHHHcc-CceEEEEcCCCCCCHHHHHHHHHHHHHHhccc
Confidence 7 221 122346788999888875 488999999 8899999999999998654
No 9
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.78 E-value=8.5e-19 Score=150.62 Aligned_cols=125 Identities=14% Similarity=0.084 Sum_probs=102.4
Q ss_pred CcEEEEEeeeecCCCCceeEEEEEEcCCCceEeccccccCCccchHHHHHHHHHhhHHHHhhCceEEEEEEccHhhHHhh
Q 039495 166 NWVKLNIEGSSSRAQGSAGAGGIVRDESGKWILGYSKNLGTSNSLASELWALYHGLNLVWERGFRKVLVECNSHEAVKCL 245 (327)
Q Consensus 166 g~lK~NvDgS~~~~~~~aG~G~ViRD~~G~~l~~~~~~~~~~s~~~AE~~Al~~AL~~A~~~g~~~Vi~EsDS~~VV~~i 245 (327)
..+++|||||+.++++.+|+|+|+++... ....+...+..|++.||+.|++.||+.+.+. .+|.|+|||+++++.|
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~--~~~~~~~~~~~tn~~aEl~A~~~AL~~~~~~--~~v~I~tDS~~vi~~i 80 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGH--TKEMSDGFSLTTNNRMELLAPIVALEALKEP--CKIILTSDSQYMRQGI 80 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTE--EEEEEEEEEEECHHHHHHHHHHHHHHTCSSC--CEEEEEECCHHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCE--EEEEecCcCCCccHHHHHHHHHHHHHHhccC--CeEEEEeCHHHHHHHH
Confidence 35899999999999999999999998542 2223333455799999999999999998654 8999999999999999
Q ss_pred cC--------CCC----CCCchhhhHHHHHHHhccCCccceeecc----CcccHHHHHHHHHHhhC
Q 039495 246 EL--------PAS----FLDPNRALILSCREYLCRNWDCKLQLIL----REANSCANWLAAHCENQ 295 (327)
Q Consensus 246 ~~--------~~~----~~s~~~~li~eI~~ll~~f~~v~~~hI~----R~~N~~AD~LAk~A~~~ 295 (327)
++ .+. .+.....+++++..++.. ..+.|.||+ |++|..||.||+.|+..
T Consensus 81 ~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~-~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 81 MTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQL-HQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp HTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTT-SEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHccccccCCCcccCHHHHHHHHHHHcc-CcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 88 332 223456788899998875 488999998 88999999999999986
No 10
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.73 E-value=4.3e-17 Score=141.23 Aligned_cols=135 Identities=20% Similarity=0.109 Sum_probs=105.3
Q ss_pred ceecCCCCCcEEEEEeeeecCCCCceeEEEEEEcCCCceEeccccccCCccchHHHHHHHHHhhHHHHhhCceEEEEEEc
Q 039495 158 ICWMPPPTNWVKLNIEGSSSRAQGSAGAGGIVRDESGKWILGYSKNLGTSNSLASELWALYHGLNLVWERGFRKVLVECN 237 (327)
Q Consensus 158 ~~W~~P~~g~lK~NvDgS~~~~~~~aG~G~ViRD~~G~~l~~~~~~~~~~s~~~AE~~Al~~AL~~A~~~g~~~Vi~EsD 237 (327)
....|.+...+++|||||+.+++|.+|+|+++++. |..+. .....+..|++.||++|++.||+.+ ...+|.|+||
T Consensus 14 l~~~P~~~~~i~iytDGs~~~npG~~g~G~vi~~~-~~~~~-~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tD 88 (165)
T 3p1g_A 14 LTDQPIPDADYTWYTDGSSFLQEGQRRAGAAVTTE-TEVIW-ARALPAGTSAQRAELIALTQALKMA---EGKKLNVYTD 88 (165)
T ss_dssp CBSSCCTTCSEEEEEEEEEEEETTEEEEEEEEECS-SCEEE-EEEECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEEC
T ss_pred CCCCCCCCCCEEEEEEcccCCCCCceEEEEEEEEC-CEEEE-EecCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEc
Confidence 34556666679999999999999999999999874 44432 2233455699999999999999998 3689999999
Q ss_pred cHhhHHhhcCCC-CCCCchhhhHHHHHHHhccCCccceeeccCcc---------cHHHHHHHHHHhhCCC
Q 039495 238 SHEAVKCLELPA-SFLDPNRALILSCREYLCRNWDCKLQLILREA---------NSCANWLAAHCENQPL 297 (327)
Q Consensus 238 S~~VV~~i~~~~-~~~s~~~~li~eI~~ll~~f~~v~~~hI~R~~---------N~~AD~LAk~A~~~~~ 297 (327)
|+++++.+.... ..+.....+++++...+..+..+.|.||+++. |+.||.||+.|.....
T Consensus 89 S~~vi~~iw~~~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~~ 158 (165)
T 3p1g_A 89 SRYAFATAHVHSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAV 158 (165)
T ss_dssp CHHHHHHHHSCCCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhcccCCCcccCHHHHHHHHHHHhcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcCC
Confidence 999999984221 12233456777776666677899999999876 9999999999987543
No 11
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.72 E-value=4.6e-17 Score=141.06 Aligned_cols=127 Identities=19% Similarity=0.064 Sum_probs=102.0
Q ss_pred cEEEEEeeeecCCCCc-----eeEEEEEEcCC--CceEeccccccCCccchHHHHHHHHHhhHHHHhhCceEEEEEEccH
Q 039495 167 WVKLNIEGSSSRAQGS-----AGAGGIVRDES--GKWILGYSKNLGTSNSLASELWALYHGLNLVWERGFRKVLVECNSH 239 (327)
Q Consensus 167 ~lK~NvDgS~~~~~~~-----aG~G~ViRD~~--G~~l~~~~~~~~~~s~~~AE~~Al~~AL~~A~~~g~~~Vi~EsDS~ 239 (327)
-+.+||||||.++++. +|+|++++..+ ..+..+.....+..+++.||+.||..||+.+...+. +|.|.|||+
T Consensus 7 evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~~~-~v~I~TDS~ 85 (165)
T 2lsn_A 7 EGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIPG-PVLVITDSF 85 (165)
T ss_dssp SEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHSSS-CEEEEESCH
T ss_pred eEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcCCC-eEEEEeChH
Confidence 4789999999999886 99999998543 344444444556678999999999999999887764 799999999
Q ss_pred hhHHhhcC------------CCCCCCchhhhHHHHHHHhccCCccceeecc----------CcccHHHHHHHHHHhh
Q 039495 240 EAVKCLEL------------PASFLDPNRALILSCREYLCRNWDCKLQLIL----------REANSCANWLAAHCEN 294 (327)
Q Consensus 240 ~VV~~i~~------------~~~~~s~~~~li~eI~~ll~~f~~v~~~hI~----------R~~N~~AD~LAk~A~~ 294 (327)
++++.++. ....+-....|++++.+++..+..+.|.||+ |+.|..||.||+++..
T Consensus 86 Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~ 162 (165)
T 2lsn_A 86 YVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGSY 162 (165)
T ss_dssp HHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhhh
Confidence 99999974 1122234567899999988888899999998 5579999999999874
No 12
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.71 E-value=1.1e-17 Score=142.16 Aligned_cols=127 Identities=11% Similarity=-0.023 Sum_probs=94.3
Q ss_pred CCCcEEEEEeeeecCCCCceeEEEEEEcCCCceEe-cc-ccccC---CccchHHHHHHHHHhhHHHHhhCceEEEEEEcc
Q 039495 164 PTNWVKLNIEGSSSRAQGSAGAGGIVRDESGKWIL-GY-SKNLG---TSNSLASELWALYHGLNLVWERGFRKVLVECNS 238 (327)
Q Consensus 164 ~~g~lK~NvDgS~~~~~~~aG~G~ViRD~~G~~l~-~~-~~~~~---~~s~~~AE~~Al~~AL~~A~~~g~~~Vi~EsDS 238 (327)
+.+.+++|||||+.+ +.+|+|+++++ +|.... .. ....+ ..|++.||++|++.||++|.+.+. +|.|+|||
T Consensus 3 ~~~~i~iytDGs~~~--g~~G~G~vi~~-~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS 78 (147)
T 2kq2_A 3 DRTEYDVYTDGSYVN--GQYAWAYAFVK-DGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDY 78 (147)
T ss_dssp TTSCCEEECCCCCBT--TBCEEEEEEEE-TTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCC
T ss_pred CCCeEEEEECCCCCC--CCcEEEEEEEE-CCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECc
Confidence 456789999999987 99999999998 555422 22 12212 359999999999999999999999 99999999
Q ss_pred HhhHHhhcCCCCCCCchhhhHHHHHHHhccCC-ccceeecc----CcccHHHHHHHHHHhhCCC
Q 039495 239 HEAVKCLELPASFLDPNRALILSCREYLCRNW-DCKLQLIL----REANSCANWLAAHCENQPL 297 (327)
Q Consensus 239 ~~VV~~i~~~~~~~s~~~~li~eI~~ll~~f~-~v~~~hI~----R~~N~~AD~LAk~A~~~~~ 297 (327)
+.+.+++++.+..... .....+++..... .+.|.||+ ++.|+.||.||+.|+....
T Consensus 79 ~~i~~w~~~~w~~~~~---~~~~~~~l~~~l~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 139 (147)
T 2kq2_A 79 AGIAFWATGEWKAKNE---FTQAYAKLMNQYRGIYSFEKVKAHSGNEFNDYVDMKAKSALGIRD 139 (147)
T ss_dssp STHHHHTTSSSSCCHH---HHHHHHCGGGGGSTTCCBCCCCCCCCCHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhCCCccCCc---chHHHHHHHHHhcCCeeEEEecCcCCCcchHHHHHHHHHHHhccc
Confidence 9999999886543321 1122222222211 67888887 6779999999999998655
No 13
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.63 E-value=3.5e-16 Score=132.26 Aligned_cols=102 Identities=18% Similarity=0.224 Sum_probs=81.8
Q ss_pred cCCCCCcEEEEEeeeecCCCCceeEEEEEEcCCCceEeccccccCCccchHHHHHHHHHhhHHHHhhCceEEEEEEccHh
Q 039495 161 MPPPTNWVKLNIEGSSSRAQGSAGAGGIVRDESGKWILGYSKNLGTSNSLASELWALYHGLNLVWERGFRKVLVECNSHE 240 (327)
Q Consensus 161 ~~P~~g~lK~NvDgS~~~~~~~aG~G~ViRD~~G~~l~~~~~~~~~~s~~~AE~~Al~~AL~~A~~~g~~~Vi~EsDS~~ 240 (327)
.||+.+++++|||||+.+++|.+|+|+|++ .+|..+... ..++..|++.||++|++.||+.+.+.++ +|.|+|||++
T Consensus 5 ~~~~~~~~~iy~DGa~~gNpG~~G~G~vl~-~~g~~~~~~-~~~~~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~ 81 (142)
T 1zbf_A 5 AKEEIIWESLSVDVGSQGNPGIVEYKGVDT-KTGEVLFER-EPIPIGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQT 81 (142)
T ss_dssp ---CCCSSSEEEEEEECSSSEEEEEEEEET-TTCCEEEEC-CCEEEECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHH
T ss_pred CCCCCCeEEEEEeeccCCCCCCeEEEEEEE-eCCEEEEEe-cccCCcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHH
Confidence 367778999999999999999999999999 678776533 3355679999999999999999999999 9999999999
Q ss_pred hHHhhcCCCC-----CCCchhhhHHHHHHH
Q 039495 241 AVKCLELPAS-----FLDPNRALILSCREY 265 (327)
Q Consensus 241 VV~~i~~~~~-----~~s~~~~li~eI~~l 265 (327)
||+++++... .+.....+++.+.++
T Consensus 82 vi~w~~~~~~k~~~~~~v~n~dLw~~l~~~ 111 (142)
T 1zbf_A 82 AIKWVKDKKAKSTLVRNEETALIWKLVDEA 111 (142)
T ss_dssp HHHHHHHTCCCCCCCCSTTTHHHHHHHHHH
T ss_pred HHHHHHcCCccCCCCCCcccHHHHHHHHHH
Confidence 9999998652 222345566665554
No 14
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.56 E-value=1.2e-14 Score=147.70 Aligned_cols=122 Identities=16% Similarity=0.125 Sum_probs=100.0
Q ss_pred cCCCCCcEEEEEeeeecCCCCceeEEEEEEcCCCceEeccccccCCccchHHHHHHHHHhhHHHHhhCceEEEEEEccHh
Q 039495 161 MPPPTNWVKLNIEGSSSRAQGSAGAGGIVRDESGKWILGYSKNLGTSNSLASELWALYHGLNLVWERGFRKVLVECNSHE 240 (327)
Q Consensus 161 ~~P~~g~lK~NvDgS~~~~~~~aG~G~ViRD~~G~~l~~~~~~~~~~s~~~AE~~Al~~AL~~A~~~g~~~Vi~EsDS~~ 240 (327)
..|..+.+++|+|||+.++++.+|+|+++++..+. ....+..|++.||++|++.||+. +..+|.|.|||++
T Consensus 430 ~~p~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~-----~~~~~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~ 500 (555)
T 1mu2_A 430 GDPIPGAETFYTDGSCNRQSKEGKAGYVTDRGKDK-----VKKLEQTTNQQAELEAFAMALTD----SGPKVNIIVDSQY 500 (555)
T ss_dssp SSCCTTCEEEEEEEEECTTTCCEEEEEEETTSCEE-----EEEESSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHH
T ss_pred CCCCCCceEEEEcccccCCCCCceEEEEEEeCCEe-----eccCCCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHH
Confidence 34667889999999999999999999999875432 22345679999999999999997 7789999999999
Q ss_pred hHHhhcCCCCCCCchhhhHHHHHHHhccCCccceeeccCc----ccHHHHHHHHHHh
Q 039495 241 AVKCLELPASFLDPNRALILSCREYLCRNWDCKLQLILRE----ANSCANWLAAHCE 293 (327)
Q Consensus 241 VV~~i~~~~~~~s~~~~li~eI~~ll~~f~~v~~~hI~R~----~N~~AD~LAk~A~ 293 (327)
|++.+++-.. .....+++++.+++..+..+.+.||+++ +|+.||.||+.|+
T Consensus 501 v~~~i~~~~~--~~~~~l~~~~~~~~~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 501 VMGIVASQPT--ESESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp HHHHHHTCCS--EESCHHHHHHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred HHHHHhcccc--cccHHHHHHHHHHhccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 9999997321 2345677777777777888999999884 6999999999874
No 15
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.52 E-value=1.1e-14 Score=147.84 Aligned_cols=121 Identities=17% Similarity=0.163 Sum_probs=96.3
Q ss_pred cCCCCCcEEEEEeeeecCCCCceeEEEEEEcCCCceEeccccccCCccchHHHHHHHHHhhHHHHhhCceEEEEEEccHh
Q 039495 161 MPPPTNWVKLNIEGSSSRAQGSAGAGGIVRDESGKWILGYSKNLGTSNSLASELWALYHGLNLVWERGFRKVLVECNSHE 240 (327)
Q Consensus 161 ~~P~~g~lK~NvDgS~~~~~~~aG~G~ViRD~~G~~l~~~~~~~~~~s~~~AE~~Al~~AL~~A~~~g~~~Vi~EsDS~~ 240 (327)
..|..+.+++++|||+.++++.+|+|+++++.....+ ..+..||+.||+.|++.||+.+ .++|.|.|||++
T Consensus 433 ~ep~~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~-----~~~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~ 503 (557)
T 2zd1_A 433 KEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVV-----PLTNTTNQKTELQAIYLALQDS----GLEVNIVTDSQY 503 (557)
T ss_dssp SSCCTTSCEEEEEEEECTTTCCEEEEEEETTSCEEEE-----EECSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHH
T ss_pred cCCCCCCEEEEEccCCCCCCCceEEEEEEECCcEEEe-----cCCCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHH
Confidence 3466778999999999999999999999985443322 2356799999999999999988 689999999999
Q ss_pred hHHhhcCCCCCCCchhhhHHHHHHHhccCCccceeeccCc----ccHHHHHHHHHH
Q 039495 241 AVKCLELPASFLDPNRALILSCREYLCRNWDCKLQLILRE----ANSCANWLAAHC 292 (327)
Q Consensus 241 VV~~i~~~~~~~s~~~~li~eI~~ll~~f~~v~~~hI~R~----~N~~AD~LAk~A 292 (327)
|++.+++.... ....++.++.+.+..+..+.+.||+++ +|+.||.||+.|
T Consensus 504 vi~~i~~~~~~--~~~~l~~~~~~~l~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 504 ALGIIQAQPDK--SESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp HHHHHTTCCSE--ESSHHHHHHHHHHHHCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred HHHHHhcCCcc--CCHHHHHHHHHHHhcCCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 99999984332 234567777766666778999999995 599999999976
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.46 E-value=8.2e-14 Score=116.30 Aligned_cols=96 Identities=20% Similarity=0.262 Sum_probs=75.2
Q ss_pred cEEEEEeeeecCCCCceeEEEEEEcCCCceEeccccccCCccchHHHHHHHHHhhHHHHhhCceEEEEEEccHhhHHhhc
Q 039495 167 WVKLNIEGSSSRAQGSAGAGGIVRDESGKWILGYSKNLGTSNSLASELWALYHGLNLVWERGFRKVLVECNSHEAVKCLE 246 (327)
Q Consensus 167 ~lK~NvDgS~~~~~~~aG~G~ViRD~~G~~l~~~~~~~~~~s~~~AE~~Al~~AL~~A~~~g~~~Vi~EsDS~~VV~~i~ 246 (327)
...+|||||+.+++|.+|+|+|+++ .|..+..+ ..++..|++.||++|+++||+.+.+.+.+ +.|+|||++|+++++
T Consensus 5 ~~~iytDGac~GNPGp~G~ggV~~~-~g~~~~~~-g~~~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi~ 81 (134)
T 4htu_A 5 WESLSVDVGSQGNPGIVEYKGVDTK-TGEVLFER-EPIPIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWVK 81 (134)
T ss_dssp SSSEEEEEEEETTTEEEEEEEEETT-TCCEEEEE-EEEEEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHHH
T ss_pred ceEEEEeeccCCCCCCeEEEEEEEE-CCEEEEEe-cCCCCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHHH
Confidence 4579999999999999999999988 66655433 33556799999999999999999998876 899999999999998
Q ss_pred CCCC-----CCCchhhhHHHHHHH
Q 039495 247 LPAS-----FLDPNRALILSCREY 265 (327)
Q Consensus 247 ~~~~-----~~s~~~~li~eI~~l 265 (327)
+..- .+.....|++.+.++
T Consensus 82 ~~~~kt~~~~~vkN~dLw~~ld~~ 105 (134)
T 4htu_A 82 DKKAKSTLVRNEETALIWKLVDEA 105 (134)
T ss_dssp HTCCCCCCCCSSTTHHHHHHHHHH
T ss_pred cCCcccCCCCCccCHHHHHHHHHH
Confidence 6321 112345555555543
No 17
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=69.53 E-value=11 Score=30.62 Aligned_cols=56 Identities=18% Similarity=0.215 Sum_probs=41.7
Q ss_pred ceeEEEEEEcCCCceEeccccccCC-ccchHHHHHHHHHhhHHHHhhCceEEEEEEcc
Q 039495 182 SAGAGGIVRDESGKWILGYSKNLGT-SNSLASELWALYHGLNLVWERGFRKVLVECNS 238 (327)
Q Consensus 182 ~aG~G~ViRD~~G~~l~~~~~~~~~-~s~~~AE~~Al~~AL~~A~~~g~~~Vi~EsDS 238 (327)
...+|+++++.+|+++.+....... .....||..|+..|... -...+..+.+.+|.
T Consensus 23 ~~~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~~ 79 (136)
T 1uwz_A 23 KFQVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAADT 79 (136)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEESC
T ss_pred CCCEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeCC
Confidence 3468999999999988765544333 35689999999999875 45567888888764
No 18
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=65.55 E-value=13 Score=30.70 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=41.7
Q ss_pred ceeEEEEEEcCCCceEeccccccCC-ccchHHHHHHHHHhhHHHHhhCceEEEEEEcc
Q 039495 182 SAGAGGIVRDESGKWILGYSKNLGT-SNSLASELWALYHGLNLVWERGFRKVLVECNS 238 (327)
Q Consensus 182 ~aG~G~ViRD~~G~~l~~~~~~~~~-~s~~~AE~~Al~~AL~~A~~~g~~~Vi~EsDS 238 (327)
....|+++++.+|+++.+...-... ..-..||..|+..|... -...+..+.+.+|.
T Consensus 35 ~f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~ 91 (146)
T 2fr5_A 35 RFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDL 91 (146)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESC
T ss_pred CCCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCC
Confidence 3467899999999988765543322 25689999999999875 45567888888874
No 19
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=65.32 E-value=13 Score=29.93 Aligned_cols=54 Identities=11% Similarity=0.050 Sum_probs=39.8
Q ss_pred eeEEEEEEcCCCceEeccccccCCccchHHHHHHHHHhhHHHHhhCceEEEEEEcc
Q 039495 183 AGAGGIVRDESGKWILGYSKNLGTSNSLASELWALYHGLNLVWERGFRKVLVECNS 238 (327)
Q Consensus 183 aG~G~ViRD~~G~~l~~~~~~~~~~s~~~AE~~Al~~AL~~A~~~g~~~Vi~EsDS 238 (327)
..+|+++++.+|+++.+...- ....-..||..|+..|... -...+..+.+.+|.
T Consensus 27 f~VGAal~~~dG~i~~G~NvE-~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 27 YSVASAALSSDGRIFTGVNVY-HFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGNE 80 (130)
T ss_dssp SCEEEEEEETTSCEEEEECCC-CTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEETT
T ss_pred CCEEEEEEecCCeEEEEeccc-cCCcccCHHHHHHHHHHHc-CCCceEEEEEEECC
Confidence 457899999999988765444 2234688999999998864 33467888888764
No 20
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=61.24 E-value=4.1 Score=39.42 Aligned_cols=75 Identities=11% Similarity=0.007 Sum_probs=49.2
Q ss_pred EEEEEeeeecCCCCceeEEEEE-EcCC--CceEeccccccC----CccchHHHHHHHHHhhHHHHhh-CceEEEEEEccH
Q 039495 168 VKLNIEGSSSRAQGSAGAGGIV-RDES--GKWILGYSKNLG----TSNSLASELWALYHGLNLVWER-GFRKVLVECNSH 239 (327)
Q Consensus 168 lK~NvDgS~~~~~~~aG~G~Vi-RD~~--G~~l~~~~~~~~----~~s~~~AE~~Al~~AL~~A~~~-g~~~Vi~EsDS~ 239 (327)
+.+++|+|-. |+|+|+ ...+ +..+.-.+..+. ..+..+.|++|+..|++..... .-.++.+.||++
T Consensus 347 ~~l~~DAS~~------~~gavL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~ 420 (455)
T 1rw3_A 347 FELFVDEKQG------YAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA 420 (455)
T ss_dssp TSCEEEEEEC------SSSBEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC
T ss_pred EEEEEeccCC------cceeEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh
Confidence 5789999743 222344 3322 344443344332 2478899999999999988764 337899999998
Q ss_pred hhHHhhcCCC
Q 039495 240 EAVKCLELPA 249 (327)
Q Consensus 240 ~VV~~i~~~~ 249 (327)
+...+++..
T Consensus 421 -~~~~l~~~~ 429 (455)
T 1rw3_A 421 -VEALVKQPP 429 (455)
T ss_dssp -TTTTSSSTT
T ss_pred -HHHHhCCCc
Confidence 777776643
No 21
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=45.26 E-value=45 Score=27.11 Aligned_cols=56 Identities=14% Similarity=0.184 Sum_probs=40.8
Q ss_pred eeEEEEEEcCCCceEeccccccC-CccchHHHHHHHHHhhHHHHhhCceEEEEEEccH
Q 039495 183 AGAGGIVRDESGKWILGYSKNLG-TSNSLASELWALYHGLNLVWERGFRKVLVECNSH 239 (327)
Q Consensus 183 aG~G~ViRD~~G~~l~~~~~~~~-~~s~~~AE~~Al~~AL~~A~~~g~~~Vi~EsDS~ 239 (327)
...|+++++.+|+++.+...-.. .....-||..|+..|... -...+..|.+.+|..
T Consensus 33 f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~-G~~~~~aiav~~~~~ 89 (141)
T 2d30_A 33 FQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSE-GDKEFVAIAIVADTK 89 (141)
T ss_dssp CCEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESCS
T ss_pred CcEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHC-CCCceEEEEEEeCCC
Confidence 45788999999998876654332 235688999999988764 344578888888753
No 22
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=42.09 E-value=46 Score=26.97 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=39.9
Q ss_pred ceeEEEEEEcCCCceEeccccccC-CccchHHHHHHHHHhhHHHHhhC-ceEEEEEEcc
Q 039495 182 SAGAGGIVRDESGKWILGYSKNLG-TSNSLASELWALYHGLNLVWERG-FRKVLVECNS 238 (327)
Q Consensus 182 ~aG~G~ViRD~~G~~l~~~~~~~~-~~s~~~AE~~Al~~AL~~A~~~g-~~~Vi~EsDS 238 (327)
....|+++++.+|+++.+...-.. ......||-.|+..+...- ... +..+.+.+|.
T Consensus 31 ~f~VGAAl~~~dG~i~~G~NvEnasy~~t~cAEr~Ai~~a~~~G-~~~~i~~i~vv~~~ 88 (142)
T 1r5t_A 31 HFRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAG-HRSGWKCMVICGDS 88 (142)
T ss_dssp CCCEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCSCCCEEEEEESC
T ss_pred CCCEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHcC-CCCceEEEEEEeCC
Confidence 346788999999998876654332 2356889999999887642 233 7788888764
No 23
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=34.77 E-value=74 Score=30.32 Aligned_cols=72 Identities=7% Similarity=-0.165 Sum_probs=47.3
Q ss_pred cEEEEEeeeecCCCCceeEEEEEEcCCCceEecccc-ccCCccchHHHHHH-HHHhhHHHHhh--Cc--eEEEEEEccHh
Q 039495 167 WVKLNIEGSSSRAQGSAGAGGIVRDESGKWILGYSK-NLGTSNSLASELWA-LYHGLNLVWER--GF--RKVLVECNSHE 240 (327)
Q Consensus 167 ~lK~NvDgS~~~~~~~aG~G~ViRD~~G~~l~~~~~-~~~~~s~~~AE~~A-l~~AL~~A~~~--g~--~~Vi~EsDS~~ 240 (327)
-+.+.+|+|- .+++|+|+..+.|........ ........+-|++| +..||+.-... |- ..+++.||.+.
T Consensus 324 ~~~l~~das~-----~g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~~ 398 (428)
T 2zd1_B 324 DLIAEIQKQG-----QGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETW 398 (428)
T ss_dssp CCEEEEEEEE-----TTEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHHH
T ss_pred CEEEEEecCC-----CCcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHHH
Confidence 3689999983 347788888777654432221 22234677788888 99999865542 43 56778899877
Q ss_pred hHH
Q 039495 241 AVK 243 (327)
Q Consensus 241 VV~ 243 (327)
+.-
T Consensus 399 ~~~ 401 (428)
T 2zd1_B 399 ETW 401 (428)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 24
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=30.56 E-value=75 Score=26.16 Aligned_cols=54 Identities=9% Similarity=-0.079 Sum_probs=38.6
Q ss_pred eeEEEEEEcCCCceEeccccccC-CccchHHHHHHHHHhhHHHHhhCceEEEEEEc
Q 039495 183 AGAGGIVRDESGKWILGYSKNLG-TSNSLASELWALYHGLNLVWERGFRKVLVECN 237 (327)
Q Consensus 183 aG~G~ViRD~~G~~l~~~~~~~~-~~s~~~AE~~Al~~AL~~A~~~g~~~Vi~EsD 237 (327)
...|+.++..+|+++.+...-.. .....-||-.|+..|+.. -...+..|.+-+|
T Consensus 46 F~VGAAll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs~-G~~~i~aiavv~~ 100 (150)
T 3mpz_A 46 FPVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSG-GGGRLVALSCVGP 100 (150)
T ss_dssp CCCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEECT
T ss_pred CCEEEEEEeCCCCEEEEEecccccCCccccHHHHHHHHHHHc-CCCceEEEEEEcC
Confidence 46788999999999987654432 235678999999988764 2345677777655
No 25
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=28.55 E-value=84 Score=25.40 Aligned_cols=53 Identities=13% Similarity=-0.014 Sum_probs=36.5
Q ss_pred eEEEEEEcCCCceEeccccccCC-ccchHHHHHHHHHhhHHHHhhCceEEEEEEc
Q 039495 184 GAGGIVRDESGKWILGYSKNLGT-SNSLASELWALYHGLNLVWERGFRKVLVECN 237 (327)
Q Consensus 184 G~G~ViRD~~G~~l~~~~~~~~~-~s~~~AE~~Al~~AL~~A~~~g~~~Vi~EsD 237 (327)
..|+++++.+|+++.+...-... .....||-.|+..|...- ...+..|.+-+|
T Consensus 32 ~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Av~~G-~~~i~aiav~~~ 85 (138)
T 3r2n_A 32 PVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYATG-GGRLVAVYCVDG 85 (138)
T ss_dssp CCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEECT
T ss_pred cEEEEEEeCCCcEEEEEcccccCCCCCcCHHHHHHHHHHHcC-CCceEEEEEEcC
Confidence 56788889999998766543322 356789999999887642 345566666554
No 26
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=26.09 E-value=1.5e+02 Score=23.98 Aligned_cols=55 Identities=20% Similarity=0.169 Sum_probs=39.5
Q ss_pred eeEEEEEEcCCCceEeccccccC-CccchHHHHHHHHHhhHHHHhh--CceEEEEEEcc
Q 039495 183 AGAGGIVRDESGKWILGYSKNLG-TSNSLASELWALYHGLNLVWER--GFRKVLVECNS 238 (327)
Q Consensus 183 aG~G~ViRD~~G~~l~~~~~~~~-~~s~~~AE~~Al~~AL~~A~~~--g~~~Vi~EsDS 238 (327)
-..|+.++..+|++..+...-.. ...-.-||-.|+..|+.. -.. .+..|.+-+|.
T Consensus 32 F~VGAAll~~dG~iytG~NVEnasy~~t~CAEr~Ai~~Avs~-G~~~~~i~aiavv~~~ 89 (138)
T 3dmo_A 32 FKVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAA-GYRPGEFAAIAVVGET 89 (138)
T ss_dssp CCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCTTCEEEEEEEESC
T ss_pred CCEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHHHc-CCCcccEEEEEEEcCC
Confidence 46788999999999987754432 235678999999888753 122 57788887775
No 27
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=25.68 E-value=42 Score=28.31 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=24.1
Q ss_pred EEEEEEcCCCceEe-ccccccC-CccchHHHHHHHHHhhHH
Q 039495 185 AGGIVRDESGKWIL-GYSKNLG-TSNSLASELWALYHGLNL 223 (327)
Q Consensus 185 ~G~ViRD~~G~~l~-~~~~~~~-~~s~~~AE~~Al~~AL~~ 223 (327)
+|+||.+ +|+++. +.....+ ......||..|+..|.+.
T Consensus 38 VGAVIV~-~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~ 77 (179)
T 2nx8_A 38 IGCVIVK-DGEIIGRGHNAREESNQAIMHAEMMAINEANAH 77 (179)
T ss_dssp CEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHH
T ss_pred EEEEEEE-CCEEEEEEECCCCCcCCCccCHHHHHHHHHHHH
Confidence 4566665 677775 3333222 123578999999998765
No 28
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=25.13 E-value=98 Score=24.94 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=36.9
Q ss_pred eEEEEEEcCCCceEeccccccCC-ccchHHHHHHHHHhhHHHHhhCceEEEEEEcc
Q 039495 184 GAGGIVRDESGKWILGYSKNLGT-SNSLASELWALYHGLNLVWERGFRKVLVECNS 238 (327)
Q Consensus 184 G~G~ViRD~~G~~l~~~~~~~~~-~s~~~AE~~Al~~AL~~A~~~g~~~Vi~EsDS 238 (327)
.+|+++++.+|+++.+...-... .....||..|+..|... -...+..+.+.+|.
T Consensus 24 ~VGAAl~~~dG~i~~G~NvEnas~~~~lcAEr~Ai~~a~~~-G~~~~~~~~v~~~~ 78 (142)
T 3b8f_A 24 GGAAAIRVEDGTIYTSVAPDVINASTELCMETGAILEAHKF-QKKVTHSICLAREN 78 (142)
T ss_dssp EEEEEEEETTSCEEEECCCCCSSGGGCCCTTHHHHHHHHHH-TCCEEEEEEEEESS
T ss_pred CEEEEEEeCCCcEEEEECcccccCCcccCHHHHHHHHHHHC-CCCcEEEEEEEecC
Confidence 68899999999988766543322 35788999999988763 22234566666653
No 29
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=23.44 E-value=1e+02 Score=27.08 Aligned_cols=48 Identities=10% Similarity=0.197 Sum_probs=29.8
Q ss_pred EEEEcCCCceEeccccccCCccchHHHHHHHHHhhHHHHhhCceEEEEEE
Q 039495 187 GIVRDESGKWILGYSKNLGTSNSLASELWALYHGLNLVWERGFRKVLVEC 236 (327)
Q Consensus 187 ~ViRD~~G~~l~~~~~~~~~~s~~~AE~~Al~~AL~~A~~~g~~~Vi~Es 236 (327)
+||.|.+|++-.. ..++...-..+=+.++...+++|.++|++.++++.
T Consensus 11 AiIMDGNrRwAk~--rgl~r~~GH~~G~~~~~~i~~~c~~lGI~~lTlYa 58 (225)
T 3ugs_B 11 AVVMDGNRRWARA--KGFLAKLGYSQGVKTMQKLMEVCMEENISNLSLFA 58 (225)
T ss_dssp EEEECCCC----------------CHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEeccCcHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 4677888887542 23344455667788899999999999999999986
No 30
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=22.39 E-value=53 Score=27.49 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=31.4
Q ss_pred eEEEEEEcCCCceEe-ccccccC-CccchHHHHHHHHHhhHHHHhhCceEEEEEE
Q 039495 184 GAGGIVRDESGKWIL-GYSKNLG-TSNSLASELWALYHGLNLVWERGFRKVLVEC 236 (327)
Q Consensus 184 G~G~ViRD~~G~~l~-~~~~~~~-~~s~~~AE~~Al~~AL~~A~~~g~~~Vi~Es 236 (327)
.+|+||.+ +|+++. +...... ......||..|+..|.+......+...++++
T Consensus 44 pVGAvIV~-dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYv 97 (171)
T 1wwr_A 44 PVGAIIVK-EGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYV 97 (171)
T ss_dssp CCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEE
T ss_pred CEEEEEEE-CCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEE
Confidence 45667776 788774 4433222 2235789999999887654333445555554
No 31
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=22.36 E-value=1.7e+02 Score=24.13 Aligned_cols=53 Identities=11% Similarity=0.066 Sum_probs=35.1
Q ss_pred eeEEEEEEcCCCceEeccccccCCccchHHHHHHHHHhhHHHHhhCceEEEEEEc
Q 039495 183 AGAGGIVRDESGKWILGYSKNLGTSNSLASELWALYHGLNLVWERGFRKVLVECN 237 (327)
Q Consensus 183 aG~G~ViRD~~G~~l~~~~~~~~~~s~~~AE~~Al~~AL~~A~~~g~~~Vi~EsD 237 (327)
...|+.+++.+|+++.+...-. ...-+-||-.|+..|+.. -...+..+.+-++
T Consensus 51 f~VGAAll~~dG~i~tG~NVEn-~~~~lCAEr~Ai~~Avs~-G~~~~~ai~vv~~ 103 (158)
T 3oj6_A 51 YSVASAAISDDGRVFSGVNVYH-FNGGPCAELVVLGVAAAA-GATKLTHIVAIAN 103 (158)
T ss_dssp SCEEEEEEETTSCEEEEECCCC-TTTCCCHHHHHHHHHHHT-TCCCEEEEEEEET
T ss_pred CcEEEEEEeCCCCEEEEEcccc-CCccccHHHHHHHHHHHh-CCCceEEEEEEeC
Confidence 3578999999999998765432 223467999988887742 1234555555554
No 32
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=22.13 E-value=55 Score=27.89 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=23.6
Q ss_pred EEEEEEcCCCceEe-cccccc-CCccchHHHHHHHHHhhHHH
Q 039495 185 AGGIVRDESGKWIL-GYSKNL-GTSNSLASELWALYHGLNLV 224 (327)
Q Consensus 185 ~G~ViRD~~G~~l~-~~~~~~-~~~s~~~AE~~Al~~AL~~A 224 (327)
+|+||.+ +|+++. +..... .......||..||..|.+.+
T Consensus 48 VGAVIV~-~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~ 88 (189)
T 3dh1_A 48 VGCLMVY-NNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWC 88 (189)
T ss_dssp CEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEEE-CCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHH
Confidence 3555554 577775 332211 12346789999999987653
No 33
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=22.08 E-value=45 Score=26.85 Aligned_cols=40 Identities=10% Similarity=0.115 Sum_probs=25.5
Q ss_pred eEEEEEEcCCCceEe-ccccccC-CccchHHHHHHHHHhhHHH
Q 039495 184 GAGGIVRDESGKWIL-GYSKNLG-TSNSLASELWALYHGLNLV 224 (327)
Q Consensus 184 G~G~ViRD~~G~~l~-~~~~~~~-~~s~~~AE~~Al~~AL~~A 224 (327)
.+|+||.+ +|+++. +...... ...-..||..|+..|.+..
T Consensus 25 ~VGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~ 66 (144)
T 2a8n_A 25 PIGAVLVL-DGRVIARSGNRTRELNDVTAHAEIAVIRMACEAL 66 (144)
T ss_dssp CCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred CEEEEEEE-CCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHc
Confidence 45677776 788774 4333222 2235789999999887643
No 34
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=21.06 E-value=60 Score=26.64 Aligned_cols=52 Identities=10% Similarity=0.026 Sum_probs=29.3
Q ss_pred eEEEEEEcCCCceEe-cccccc-CCccchHHHHHHHHHhhHHHHhhCceEEEEEE
Q 039495 184 GAGGIVRDESGKWIL-GYSKNL-GTSNSLASELWALYHGLNLVWERGFRKVLVEC 236 (327)
Q Consensus 184 G~G~ViRD~~G~~l~-~~~~~~-~~~s~~~AE~~Al~~AL~~A~~~g~~~Vi~Es 236 (327)
-+|+||.+ +|+++. +..... ....-..||..|+..|.+......+...++++
T Consensus 28 pVGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tlyv 81 (159)
T 2b3j_A 28 PIGAIITK-DDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYV 81 (159)
T ss_dssp CCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred CEEEEEEE-CCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEEE
Confidence 34666666 677774 333222 11245789999999887653333333444443
No 35
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=20.04 E-value=1.4e+02 Score=25.44 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=26.2
Q ss_pred EEEEEEcCC-CceEe-cccccc-CCccchHHHHHHHHHhhHH
Q 039495 185 AGGIVRDES-GKWIL-GYSKNL-GTSNSLASELWALYHGLNL 223 (327)
Q Consensus 185 ~G~ViRD~~-G~~l~-~~~~~~-~~~s~~~AE~~Al~~AL~~ 223 (327)
+|+||.+.+ |+++. +..... ......+||..|+..|-+.
T Consensus 50 vGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~ 91 (197)
T 2g84_A 50 FAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAK 91 (197)
T ss_dssp CEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHH
Confidence 377777766 88876 333322 2235679999999988664
Done!