BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039497
(642 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225437689|ref|XP_002279803.1| PREDICTED: uncharacterized protein LOC100264112 [Vitis vinifera]
Length = 677
Score = 971 bits (2510), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/653 (71%), Positives = 541/653 (82%), Gaps = 14/653 (2%)
Query: 1 MEPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIA 60
MEP GTI FTTVGRP+YGFD+FS+ E RLT GTSINFN F+D ++QT+
Sbjct: 28 MEPTGTIAFTTVGRPHYGFDLFSLNLDPNLINHTSERRLTGGTSINFNGHFLD-ENQTLV 86
Query: 61 FISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWS 120
++SERSGSPRIYQ RPG +K E L S+P SL+HDRP+ +N +L+F+SAHE+P++ F SWS
Sbjct: 87 YVSERSGSPRIYQIRPGVTKPEQLLSVPGSLYHDRPIVKNGRLYFVSAHERPEKPFISWS 146
Query: 121 ALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQE 180
A+YST L +LTP+GVVDYSP++S SGKFIAVASY SRPW GEFHEL+TDIVVF+E
Sbjct: 147 AVYSTGLDDKAVVQLTPHGVVDYSPAISRSGKFIAVASYGSRPWGGEFHELHTDIVVFRE 206
Query: 181 SDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTP 240
S+P KRV+VCERGGWPTWSGDS +YFHRQADDGWWSIF V+ PE + AP R+TP
Sbjct: 207 SEPEKRVVVCERGGWPTWSGDSNLYFHRQADDGWWSIFSVNLPEGFQSSSISEAPRRITP 266
Query: 241 PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL----------TLNPNFHHYNPFVS 290
P VHCFTPAA KR+AVATRRK NFRHIEI+D+ +LNPNFHHYNPFVS
Sbjct: 267 PRVHCFTPAAMQGSKRIAVATRRKGSNFRHIEIFDIDSKKFYPVTESLNPNFHHYNPFVS 326
Query: 291 ANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDF 350
F+GYHRFRGES+ G+STIPHL+PV SP+ ELRMLRLNGSFPSFSP G LI FNHDF
Sbjct: 327 PECGFLGYHRFRGESSPGESTIPHLDPVVSPINELRMLRLNGSFPSFSPAGDLIAFNHDF 386
Query: 351 ELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410
E G+KI KSDGSKRWT++KDRTAFYNSWSPTEKHVIYTS GPIF+S +ATVQIAR+SF
Sbjct: 387 EAKGGLKIVKSDGSKRWTVLKDRTAFYNSWSPTEKHVIYTSVGPIFESVKATVQIARISF 446
Query: 411 QLDPSD-DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN 469
DPS D++RE+IP DVKILT+EETGNNAFPSCSPDGK +VFRSGRSG+KNL+++DAVN
Sbjct: 447 --DPSYLDDDREDIPADVKILTREETGNNAFPSCSPDGKSVVFRSGRSGNKNLYIIDAVN 504
Query: 470 GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH 529
GE G IRQLT+GPWIDTMPSWSP G LIAFSSNRHNPDN+ AFS+YVI+PDGS LRR++
Sbjct: 505 GELEGGIRQLTEGPWIDTMPSWSPDGKLIAFSSNRHNPDNLNAFSIYVIRPDGSDLRRVY 564
Query: 530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589
VAG EGS DVDRERINHVCFSAD EWLLF ANLG + AEP+S PNQFQPYGDL+VV+LDG
Sbjct: 565 VAGSEGSVDVDRERINHVCFSADCEWLLFAANLGGMTAEPISLPNQFQPYGDLFVVRLDG 624
Query: 590 SGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEPLWISCDF 642
SGL+RLTWNGYENGTPAWH GN++D+G++ L + GDKL G+FDEPLWISC+
Sbjct: 625 SGLKRLTWNGYENGTPAWHTGNEVDMGRMCLGSENGDKLTGEFDEPLWISCEL 677
>gi|147767869|emb|CAN71280.1| hypothetical protein VITISV_027089 [Vitis vinifera]
Length = 677
Score = 959 bits (2479), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/653 (70%), Positives = 535/653 (81%), Gaps = 14/653 (2%)
Query: 1 MEPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIA 60
MEP GTI FTTVGRP+YGFD+FS+ E RLT GTSINFN F+D ++QT+
Sbjct: 28 MEPTGTIAFTTVGRPHYGFDLFSLNLDPNLINHTSERRLTGGTSINFNGHFLD-ENQTLV 86
Query: 61 FISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWS 120
++SE SGSPRIYQ RPG +K E L S+P SL+HDRP+ +N +L+F+SAHE+P++ F SWS
Sbjct: 87 YVSEXSGSPRIYQIRPGVTKPEQLLSVPGSLYHDRPIVKNGRLYFVSAHERPEKPFISWS 146
Query: 121 ALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQE 180
A+YST L LTP+GVVDYSP++S SGKFIAVASY SRPW GEFHEL+TDIVVF+E
Sbjct: 147 AVYSTGLDDKAVVXLTPHGVVDYSPAISRSGKFIAVASYGSRPWGGEFHELHTDIVVFRE 206
Query: 181 SDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTP 240
+P KRV+VCERGGWPTWSGDS +YFHRQADDGWWSIF V+ PE + AP R+TP
Sbjct: 207 XEPEKRVVVCERGGWPTWSGDSNLYFHRQADDGWWSIFSVTLPEXFQSSSISEAPRRITP 266
Query: 241 PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL----------TLNPNFHHYNPFVS 290
P VHCFTPAA KR+AVATRRK NFRHIEI+D+ +LNPNFHHYNPFVS
Sbjct: 267 PRVHCFTPAAMQGSKRIAVATRRKGSNFRHIEIFDIDSKKFYPVTESLNPNFHHYNPFVS 326
Query: 291 ANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDF 350
F+GYHRFRGES+ G+STIPHL+PV SP+ ELRMLRLNGSFP FSP G LI FNHDF
Sbjct: 327 PECGFLGYHRFRGESSPGESTIPHLDPVXSPINELRMLRLNGSFPXFSPAGDLIAFNHDF 386
Query: 351 ELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410
E G+KI KSDGSKRWT++KDRTAFYNSWSPTEKHVIYTS GPIF+S +ATVQIAR+SF
Sbjct: 387 EAKGGLKIVKSDGSKRWTVLKDRTAFYNSWSPTEKHVIYTSXGPIFESVKATVQIARISF 446
Query: 411 QLDPSD-DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN 469
DPS D++RE+IP DVKILT+EETGNNAFPSCSPDGK +VFRSGRSG+KNL+++DAVN
Sbjct: 447 --DPSYLDDDREDIPADVKILTREETGNNAFPSCSPDGKSVVFRSGRSGNKNLYIIDAVN 504
Query: 470 GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH 529
GE G IRQLT+G WIDTMPSWSP G LIAFSSNRHNPDN+ AFS+YVI+PDGS LRR++
Sbjct: 505 GELEGGIRQLTEGXWIDTMPSWSPDGKLIAFSSNRHNPDNLNAFSIYVIRPDGSDLRRVY 564
Query: 530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589
VAG EGS DVDRERINHVCFSAD EWLLF ANLG AEP+S PNQFQPYGDL+VV+LDG
Sbjct: 565 VAGSEGSVDVDRERINHVCFSADCEWLLFAANLGGXTAEPISLPNQFQPYGDLFVVRLDG 624
Query: 590 SGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEPLWISCDF 642
SGL+RLTWNGYENGTPAWH GN++D+G++ L + GDKL G+FDEPLWISC+
Sbjct: 625 SGLKRLTWNGYENGTPAWHTGNEVDMGRMCLGSENGDKLTGEFDEPLWISCEL 677
>gi|255548311|ref|XP_002515212.1| conserved hypothetical protein [Ricinus communis]
gi|223545692|gb|EEF47196.1| conserved hypothetical protein [Ricinus communis]
Length = 666
Score = 957 bits (2474), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/666 (70%), Positives = 552/666 (82%), Gaps = 29/666 (4%)
Query: 3 PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFH-----EHRLTDGTSINFNAQFVDGQ-- 55
PKGT+VFTTVGRP YGFDVFSIK P + FH EH LTDGTSIN+NAQFV Q
Sbjct: 4 PKGTVVFTTVGRPSYGFDVFSIKLP-SDLNSFHFSNSDEHCLTDGTSINYNAQFVTQQHH 62
Query: 56 -DQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQ 114
+Q+I +ISERSG P +Y ++P SK E LPS P SLFHDRP+ +N++L+FISAHE+PDQ
Sbjct: 63 QNQSIVYISERSGFPAMYLSKPNLSKPEQLPSAPESLFHDRPIIKNDRLYFISAHEKPDQ 122
Query: 115 IFKSWSALYSTDLKASK-----FTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFH 169
+F+SWSALYSTDL S+ TRLTP+GVVD+SP++S SG FIAVASY SRPW GEFH
Sbjct: 123 LFRSWSALYSTDLSHSRREGDNVTRLTPFGVVDFSPAISLSGNFIAVASYGSRPWSGEFH 182
Query: 170 ELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFL 229
ELNTDIVVF+ SDP+KR +V ERGGWPTWS DS IYFHRQA+DGWWSIF+V FPEN++ +
Sbjct: 183 ELNTDIVVFKASDPDKRAVVSERGGWPTWSLDSAIYFHRQAEDGWWSIFQVKFPENMDDV 242
Query: 230 GFPI-APTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT----------L 278
+ AP RVTPPGVHCFTPAA HDGKR+AVATRR ++ +RHIEI+DL L
Sbjct: 243 SGSVNAPLRVTPPGVHCFTPAAMHDGKRIAVATRRPDKKYRHIEIFDLASGTFYPVTELL 302
Query: 279 NPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFS 338
NP+ HHYNPFVSA+S FIGYHRFRG S G+ TI +LEPV SP+K+LRMLRLNGSFPSFS
Sbjct: 303 NPSLHHYNPFVSADSLFIGYHRFRGGSGHGERTIRNLEPVRSPIKDLRMLRLNGSFPSFS 362
Query: 339 PDGGLIVFNHDF-ELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQ 397
PDG L+ FN DF + + G+K+ KS+GSKRWTLIKDR AF NSWSPTEKHVI+TS GPIF+
Sbjct: 363 PDGNLMAFNPDFVDSSGGLKVVKSNGSKRWTLIKDRVAFCNSWSPTEKHVIFTSLGPIFE 422
Query: 398 SERATVQIARVSFQLDPSD-DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR 456
S + TVQIARV+F+ PSD ++ E+ CDVKILT+E+TGNNAFPSCSPDG+ LVFRSGR
Sbjct: 423 SAKTTVQIARVTFK--PSDLKSDHNEVSCDVKILTREDTGNNAFPSCSPDGESLVFRSGR 480
Query: 457 SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY 516
SGHKNL+++DAV GEFNG IRQLT+GPWIDTMPSWSPKGDLIAFSSNRHNP+NV AFS+Y
Sbjct: 481 SGHKNLYIIDAVEGEFNGGIRQLTEGPWIDTMPSWSPKGDLIAFSSNRHNPNNVNAFSIY 540
Query: 517 VIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQF 576
VI+PDGSGL+RIHVAG EGS + +R RINHVCFS DGEWLLFT NLG+V AEPVSWPNQF
Sbjct: 541 VIRPDGSGLKRIHVAGSEGSSEGERGRINHVCFSRDGEWLLFTGNLGSVTAEPVSWPNQF 600
Query: 577 QPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEPL 636
QPYGDL+V +LDGSGL RLTWNG+ENGTPAWHP ++L+L L L++D+ DKL GQFD+PL
Sbjct: 601 QPYGDLHVTRLDGSGLSRLTWNGFENGTPAWHPRSELELDSLCLDEDVEDKLTGQFDDPL 660
Query: 637 WISCDF 642
WI+CD
Sbjct: 661 WINCDI 666
>gi|20259480|gb|AAM13860.1| unknown protein [Arabidopsis thaliana]
Length = 657
Score = 923 bits (2385), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/656 (67%), Positives = 525/656 (80%), Gaps = 23/656 (3%)
Query: 3 PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFI 62
PKGTI+FTTVGR +YGFDVFS+ N E RLTDG S+NFNAQFV+ + + F+
Sbjct: 9 PKGTIIFTTVGRTHYGFDVFSL-----NIATSVERRLTDGVSVNFNAQFVNDKSDDVVFV 63
Query: 63 SERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPV-ARNNKLFFISAHEQPDQIFKSWSA 121
SER+GS RIY+TR G SK E +P P S FHDRP+ +NN+L+FISAHEQPD+ FK+WSA
Sbjct: 64 SERNGSARIYKTRSGISKPEQIPGAPESYFHDRPIITQNNRLYFISAHEQPDRYFKNWSA 123
Query: 122 LYSTDLKASK--FTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQ 179
LY+ +L ++K TR+TP D+SP+VS SG F+AVASY +R W GEFHE+NTDI VF+
Sbjct: 124 LYTVELNSAKREVTRVTPPDTTDFSPAVSQSGDFLAVASYGTRSWGGEFHEINTDITVFK 183
Query: 180 ESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENL-EFLGFPIAPTRV 238
S P RV++CERGGWPTWSGDST++FH QADDGWWSIFRV PEN E+ FPI P RV
Sbjct: 184 ASKPETRVVICERGGWPTWSGDSTVFFHHQADDGWWSIFRVDIPENFTEYTDFPITPIRV 243
Query: 239 TPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL----------TLNPNFHHYNPF 288
TP G+HCFTPAAF DGKR+A+ATRR+ N RHIEIYDL +LNP+FHHYNPF
Sbjct: 244 TPSGLHCFTPAAFRDGKRIALATRRRGVNHRHIEIYDLENTTFQPVTESLNPSFHHYNPF 303
Query: 289 VSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH 348
VS +SEF+GYHRFRGEST+G+S +P++E + SP+K LR+LR+NGSFPS SP+G LI N
Sbjct: 304 VSPDSEFLGYHRFRGESTQGESIVPNIESIVSPIKTLRLLRINGSFPSSSPNGDLIALNS 363
Query: 349 DFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV 408
DF++N GIK++KSDGSKRWTLIKDRTAFYNSWSPTE+HVIYTS GPIF R VQIAR+
Sbjct: 364 DFDINGGIKVSKSDGSKRWTLIKDRTAFYNSWSPTERHVIYTSLGPIFSPARIAVQIARI 423
Query: 409 SFQLDPSD-DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA 467
F DPSD ++E++PCDVKILT E TGNNAFPSCSPDGK +VFRSGRSGHKNL+++DA
Sbjct: 424 KF--DPSDLTADKEDLPCDVKILTLENTGNNAFPSCSPDGKSIVFRSGRSGHKNLYIVDA 481
Query: 468 VNGEFNGD-IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526
VNGE NG IR+LTDGPWIDTMP WSPKGDLI FSSNRHNP+N F YV++PDG+GLR
Sbjct: 482 VNGESNGGGIRRLTDGPWIDTMPCWSPKGDLIGFSSNRHNPENTAVFGAYVVRPDGTGLR 541
Query: 527 RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVK 586
RI ++GPEGS + RER+NHV F+ DG+WL+F ANL V AEPV+ PNQFQPYGDLYVVK
Sbjct: 542 RIQISGPEGSEEAARERVNHVSFNKDGDWLVFAANLSGVTAEPVTMPNQFQPYGDLYVVK 601
Query: 587 LDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEPLWISCDF 642
LDG+GLRRLTWNGYE+GTP WH ++LDL +L L GDKL GQF+EPLWISCD
Sbjct: 602 LDGTGLRRLTWNGYEDGTPTWHTADELDLSQLNLNGQDGDKLEGQFEEPLWISCDI 657
>gi|297809975|ref|XP_002872871.1| hypothetical protein ARALYDRAFT_490390 [Arabidopsis lyrata subsp.
lyrata]
gi|297318708|gb|EFH49130.1| hypothetical protein ARALYDRAFT_490390 [Arabidopsis lyrata subsp.
lyrata]
Length = 652
Score = 922 bits (2383), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/656 (67%), Positives = 529/656 (80%), Gaps = 23/656 (3%)
Query: 3 PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFI 62
PKGTI+FTTVGR +YGFDVFS+ + E RLTDG S+NFNAQFV+ + + F+
Sbjct: 4 PKGTIIFTTVGRTHYGFDVFSL-----HIATAVERRLTDGVSVNFNAQFVNDKSDDVVFV 58
Query: 63 SERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPV-ARNNKLFFISAHEQPDQIFKSWSA 121
SER+GS RIY+TRPG S+ E LP P S FHDRP+ ++N+L+FISAHEQPD+ FK+WSA
Sbjct: 59 SERNGSARIYKTRPGISEPEQLPGAPESYFHDRPIITQSNRLYFISAHEQPDRHFKNWSA 118
Query: 122 LYSTDLKASK--FTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQ 179
LY+ +L + TR+TP D+SP+VS SG F+AVASY SR W GEFHE+NTDI VF+
Sbjct: 119 LYTVELNGEEREVTRVTPLDTADFSPAVSQSGDFLAVASYGSRSWGGEFHEINTDITVFK 178
Query: 180 ESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLE-FLGFPIAPTRV 238
S+P RV++CERGGWPTWSGDST++FH QADDGWWSIFRV PEN + + FPI P RV
Sbjct: 179 ASEPETRVVICERGGWPTWSGDSTVFFHHQADDGWWSIFRVDIPENFKKYSDFPITPIRV 238
Query: 239 TPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT----------LNPNFHHYNPF 288
TP G+HCFTPAAFHDGKR+AVATRR+ N RHIEIYDL LNP+FHHYNPF
Sbjct: 239 TPSGLHCFTPAAFHDGKRIAVATRRRGVNHRHIEIYDLDHKTFQPVTEPLNPSFHHYNPF 298
Query: 289 VSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH 348
VS+NSEF+GYHRFRGEST+G+S +P++E + SP+K LR+LR+NGSFPS SP+G LI N
Sbjct: 299 VSSNSEFLGYHRFRGESTQGESIVPNIESIVSPIKTLRLLRINGSFPSSSPNGDLIALNS 358
Query: 349 DFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV 408
DF++N GIK+AKSDGSKRWTLIKDRTAFYNSWSPTE+HVIYTS GPIF+ VQIAR+
Sbjct: 359 DFDINGGIKVAKSDGSKRWTLIKDRTAFYNSWSPTERHVIYTSLGPIFRPAGIAVQIARI 418
Query: 409 SFQLDPSD-DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA 467
F DPSD ++EE+PCDVKILT E TGNNAFPSCSPDGK +VFRSGRSGHKNL+++DA
Sbjct: 419 KF--DPSDLTADKEELPCDVKILTLENTGNNAFPSCSPDGKSIVFRSGRSGHKNLYIVDA 476
Query: 468 VNGEFNGD-IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526
VNGE NG IR+LT+GPWIDTMP WSPKGDLI FSSNRHNP N++AF YV++PDGSGLR
Sbjct: 477 VNGESNGGGIRRLTEGPWIDTMPCWSPKGDLIGFSSNRHNPANIDAFGAYVVRPDGSGLR 536
Query: 527 RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVK 586
RI ++GPEGS + RER+NHV F+ DG+WL+FTANL + AEPV+ PNQFQPYGDLYVVK
Sbjct: 537 RILISGPEGSEEAARERVNHVSFNKDGDWLVFTANLCGITAEPVAMPNQFQPYGDLYVVK 596
Query: 587 LDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEPLWISCDF 642
LDG+GLRRLTWNGYE+GTP WH ++LDL ++ L GDKL GQF+EPLWISCD
Sbjct: 597 LDGTGLRRLTWNGYEDGTPTWHTADELDLSRMSLNGQDGDKLDGQFEEPLWISCDI 652
>gi|15234357|ref|NP_192096.1| tolB-related protein [Arabidopsis thaliana]
gi|4558556|gb|AAD22649.1|AC007138_13 predicted protein of unknown function [Arabidopsis thaliana]
gi|7268571|emb|CAB80680.1| predicted protein of unknown function [Arabidopsis thaliana]
gi|29824389|gb|AAP04154.1| unknown protein [Arabidopsis thaliana]
gi|110742479|dbj|BAE99158.1| hypothetical protein [Arabidopsis thaliana]
gi|332656688|gb|AEE82088.1| tolB-related protein [Arabidopsis thaliana]
Length = 652
Score = 922 bits (2382), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/656 (67%), Positives = 525/656 (80%), Gaps = 23/656 (3%)
Query: 3 PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFI 62
PKGTI+FTTVGR +YGFDVFS+ N E RLTDG S+NFNAQFV+ + + F+
Sbjct: 4 PKGTIIFTTVGRTHYGFDVFSL-----NIATSVERRLTDGVSVNFNAQFVNDKSDDVVFV 58
Query: 63 SERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPV-ARNNKLFFISAHEQPDQIFKSWSA 121
SER+GS RIY+TR G SK E +P P S FHDRP+ +NN+L+FISAHEQPD+ FK+WSA
Sbjct: 59 SERNGSARIYKTRSGISKPEQIPGAPESYFHDRPIITQNNRLYFISAHEQPDRYFKNWSA 118
Query: 122 LYSTDLKASK--FTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQ 179
LY+ +L ++K TR+TP D+SP+VS SG F+AVASY +R W GEFHE+NTDI VF+
Sbjct: 119 LYTVELNSAKREVTRVTPPDTADFSPAVSQSGDFLAVASYGTRSWGGEFHEINTDITVFK 178
Query: 180 ESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENL-EFLGFPIAPTRV 238
S P RV++CERGGWPTWSGDST++FH QADDGWWSIFRV PEN E+ FPI P RV
Sbjct: 179 ASKPETRVVICERGGWPTWSGDSTVFFHHQADDGWWSIFRVDIPENFTEYTDFPITPIRV 238
Query: 239 TPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL----------TLNPNFHHYNPF 288
TP G+HCFTPAAF DGKR+A+ATRR+ N RHIEIYDL +LNP+FHHYNPF
Sbjct: 239 TPSGLHCFTPAAFRDGKRIALATRRRGVNHRHIEIYDLENTTFQPVTESLNPSFHHYNPF 298
Query: 289 VSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH 348
VS +SEF+GYHRFRGEST+G+S +P++E + SP+K LR+LR+NGSFPS SP+G LI N
Sbjct: 299 VSPDSEFLGYHRFRGESTQGESIVPNIESIVSPIKTLRLLRINGSFPSSSPNGDLIALNS 358
Query: 349 DFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV 408
DF++N GIK++KSDGSKRWTLIKDRTAFYNSWSPTE+HVIYTS GPIF R VQIAR+
Sbjct: 359 DFDINGGIKVSKSDGSKRWTLIKDRTAFYNSWSPTERHVIYTSLGPIFSPARIAVQIARI 418
Query: 409 SFQLDPSD-DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA 467
F DPSD ++E++PCDVKILT E TGNNAFPSCSPDGK +VFRSGRSGHKNL+++DA
Sbjct: 419 KF--DPSDLTADKEDLPCDVKILTLENTGNNAFPSCSPDGKSIVFRSGRSGHKNLYIVDA 476
Query: 468 VNGEFNGD-IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526
VNGE NG IR+LTDGPWIDTMP WSPKGDLI FSSNRHNP+N F YV++PDG+GLR
Sbjct: 477 VNGESNGGGIRRLTDGPWIDTMPCWSPKGDLIGFSSNRHNPENTAVFGAYVVRPDGTGLR 536
Query: 527 RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVK 586
RI ++GPEGS + RER+NHV F+ DG+WL+F ANL V AEPV+ PNQFQPYGDLYVVK
Sbjct: 537 RIQISGPEGSEEAARERVNHVSFNKDGDWLVFAANLSGVTAEPVTMPNQFQPYGDLYVVK 596
Query: 587 LDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEPLWISCDF 642
LDG+GLRRLTWNGYE+GTP WH ++LDL +L L GDKL GQF+EPLWISCD
Sbjct: 597 LDGTGLRRLTWNGYEDGTPTWHTADELDLSQLNLNGQDGDKLEGQFEEPLWISCDI 652
>gi|449436369|ref|XP_004135965.1| PREDICTED: uncharacterized protein LOC101214858 [Cucumis sativus]
gi|449488783|ref|XP_004158170.1| PREDICTED: uncharacterized protein LOC101226808 [Cucumis sativus]
Length = 642
Score = 834 bits (2155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/653 (63%), Positives = 503/653 (77%), Gaps = 28/653 (4%)
Query: 3 PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFI 62
P G ++FTTVG YGFD+FS+ + E +LTDG S+NFNAQF++ Q ++ FI
Sbjct: 4 PTGAVLFTTVGLNQYGFDIFSVPLNSLTV----ERQLTDGISVNFNAQFLNNQ-LSVVFI 58
Query: 63 SERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSAL 122
SERSGS RIY + +S +LL S P S FHDRP+ N +L FISAHE P + F SW+AL
Sbjct: 59 SERSGSSRIYLSDSPNSSPKLLASAPGSCFHDRPIVTNGRLLFISAHENPHKPFTSWAAL 118
Query: 123 YSTDLKA-SKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQES 181
YST L TRLTP G VD+SP+VS SGKF+AVASY SR W GEFHELN +IVVF+ S
Sbjct: 119 YSTPLDGHDSVTRLTPLGSVDFSPAVSESGKFVAVASYGSRSWGGEFHELNLEIVVFKSS 178
Query: 182 DPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPT--RVT 239
DP +RV+V RGGWP+WSGDST++FHR+ADDGWWSIF+V PENL+ ++P RVT
Sbjct: 179 DPGQRVVVAGRGGWPSWSGDSTVFFHRKADDGWWSIFKVEIPENLDSSRSSVSPVAIRVT 238
Query: 240 PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD----------LTLNPNFHHYNPFV 289
P G+HCFTPAA +DG+R+ VATRR + +RHIEI+D LNP FHHYNPFV
Sbjct: 239 PAGLHCFTPAAMNDGRRVVVATRRADSKYRHIEIFDSELEEFIPITQKLNPEFHHYNPFV 298
Query: 290 SANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHD 349
S +S FIGYHRFRGEST+ + IP+L PV SP+KEL+++R+NGSFP+ SPDG LI FN
Sbjct: 299 SPDSNFIGYHRFRGESTQSE-LIPYLYPVISPIKELQIIRVNGSFPTPSPDGDLIAFNPG 357
Query: 350 FELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVS 409
F G++I K DGSK T++KDRTAF NSWSPTEK+VIYTS GPIF + ATVQIAR++
Sbjct: 358 F---IGLQIVKFDGSKCRTVLKDRTAFCNSWSPTEKNVIYTSLGPIFGAVTATVQIARIT 414
Query: 410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN 469
SD E+ +VKILTK+ TGNNAFP+CSPDGKFLVFRSGR+GHKNL+++DA+
Sbjct: 415 INSGDSD-----EVSNEVKILTKDNTGNNAFPACSPDGKFLVFRSGRTGHKNLYIVDAMK 469
Query: 470 GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH 529
GEF G++RQLTDGPWIDTMP+WSP+GDLI FSSN HNP N EAFS+YVI+PDGSGLRR++
Sbjct: 470 GEFEGELRQLTDGPWIDTMPNWSPRGDLIVFSSNMHNPKNTEAFSIYVIRPDGSGLRRVY 529
Query: 530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589
VAGPEGS +VDRERINHVCFS DG WLLFTANL V AEPVS PNQFQPYGDL+VV+LDG
Sbjct: 530 VAGPEGSSEVDRERINHVCFSRDGNWLLFTANLSGVTAEPVSLPNQFQPYGDLFVVRLDG 589
Query: 590 SGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDD-IGDKLRGQFDEPLWISCD 641
+GLRRLT N YENGTP W+ G++L L L L+D+ +G+KL+G FDEPLWI D
Sbjct: 590 TGLRRLTCNAYENGTPTWYYGSELALSGLSLKDEVVGEKLKGDFDEPLWIKFD 642
>gi|356521141|ref|XP_003529216.1| PREDICTED: uncharacterized protein LOC100814036 [Glycine max]
Length = 656
Score = 817 bits (2110), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/665 (62%), Positives = 503/665 (75%), Gaps = 33/665 (4%)
Query: 1 MEPKGTIVFTTVGRPYYGFDVFSIKSPFVNAP--KFHEHRLTDGTSINFNAQFVDGQDQT 58
+ P GTIVF TVGR YGFDVFS+ P +HRLTDG SINFNAQF++ Q+
Sbjct: 2 LPPAGTIVFNTVGRVQYGFDVFSVDLNHQQPPPHATADHRLTDGVSINFNAQFINPQND- 60
Query: 59 IAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKS 118
+ F+SER+GSPR Y T+P +K + LP +P +LFHDRP+ +N KL+F+S HE+ D +F S
Sbjct: 61 VVFVSERTGSPRFYITKP-DTKPQPLPFLPNALFHDRPIVKNGKLYFVSTHEENDAVFTS 119
Query: 119 WSALYSTDLKASKFT--RLTPYGVVDYSPSVSYSGKFIAVASYESRPW-PGEFHELNTDI 175
WSA+YST + S T RLTP G VDYSP+VS +GKF+ VASY SR W +F EL T+I
Sbjct: 120 WSAVYSTAIDDSTATVKRLTPRGEVDYSPAVSLTGKFLGVASYRSRRWQTNDFRELQTEI 179
Query: 176 VVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAP 235
VVF ESDP RV V ERGGWP+WS DSTI+FHR A+DGWWSIFRV ++ E +P
Sbjct: 180 VVFPESDPKNRVTVSERGGWPSWSQDSTIFFHRIAEDGWWSIFRVDLTDS-ELSESRNSP 238
Query: 236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT----------LNPNFHHY 285
RVTPPG+HCFTPAAFHDGKR+AVATRR+ N RH+EI+DL +NPNF+HY
Sbjct: 239 IRVTPPGLHCFTPAAFHDGKRVAVATRRRESNLRHVEIFDLESQTFQRITEDINPNFNHY 298
Query: 286 NPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIV 345
NPFVS +S +GYHRFRGES +G+ PHL+ V SPV++L++LRLNGSFP+FSPDG I
Sbjct: 299 NPFVSLDSRHLGYHRFRGESIQGEPIYPHLDKVLSPVRDLQLLRLNGSFPTFSPDGDFIA 358
Query: 346 FNH--DFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATV 403
FNH D +N G+KI KS+GSKRWTL+K RT F+N+WSPTEK+VIYTS GPIF+S TV
Sbjct: 359 FNHGLDGNVNGGVKIVKSNGSKRWTLLKGRTCFHNAWSPTEKNVIYTSVGPIFESVYKTV 418
Query: 404 QIARVSFQLDPSD-DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNL 462
QIAR+ F DP N+REE+P + ILT+E+TGNNAFPSCSPDGK +VFRSGR G+KNL
Sbjct: 419 QIARIEF--DPVHLTNDREEVPFKLTILTREDTGNNAFPSCSPDGKSIVFRSGREGYKNL 476
Query: 463 FVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG 522
+++DAV GEF+G IR+LT+G WIDTMP WSPKGDLIAFSSNRH+P N E F +Y++ P+G
Sbjct: 477 YIVDAVKGEFDGGIRRLTEGEWIDTMPCWSPKGDLIAFSSNRHDPKNSEVFGIYLVGPNG 536
Query: 523 SGLRRIHVA-GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGD 581
SGLRR+ VA G EG +ER+NHVCFS DGEWLLFTANLG V AEPV PNQFQPYGD
Sbjct: 537 SGLRRVEVAKGVEGM----KERLNHVCFSRDGEWLLFTANLGGVSAEPVGLPNQFQPYGD 592
Query: 582 LYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIG----DKLRGQFDEPLW 637
LYVV+LDGSGLRRLT N YENGTP WH G+ L L R +D G DKL+G+F EPLW
Sbjct: 593 LYVVRLDGSGLRRLTCNAYENGTPTWHHGD-LALCAPREDDGEGGQDWDKLKGEFQEPLW 651
Query: 638 ISCDF 642
I+CD
Sbjct: 652 ITCDI 656
>gi|358347278|ref|XP_003637686.1| Protein tolB [Medicago truncatula]
gi|355503621|gb|AES84824.1| Protein tolB [Medicago truncatula]
Length = 650
Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/659 (61%), Positives = 496/659 (75%), Gaps = 31/659 (4%)
Query: 3 PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFH-EHRLTDGTSINFNAQFVDGQDQTIAF 61
P GTIVF TVGR YGFDVF + + H +HRLTDG S+NFNAQF + QTI F
Sbjct: 4 PSGTIVFNTVGRTQYGFDVF-----YTHLNNNHNDHRLTDGISVNFNAQFTNDH-QTIVF 57
Query: 62 ISERSGSPRIYQTRPGSSKTELLPSIPC-SLFHDRPVARNNKLFFISAHEQPDQIFKSWS 120
+SER+GSPR Y TR + LLPS+P +LF D P+ +N+K++F S H+QP+ +FKS S
Sbjct: 58 VSERTGSPRFYLTRSENKPELLLPSLPNNTLFQDCPIIKNSKIYFSSTHDQPNALFKSAS 117
Query: 121 ALYSTDLKAS-KFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQ 179
A+YST + + TRLTP+GVVDYSP+VS +G IAVASY SR W G+F EL TDIVVF+
Sbjct: 118 AVYSTAVDGTGTLTRLTPHGVVDYSPAVSLTGNLIAVASYGSRNWDGDFRELKTDIVVFE 177
Query: 180 ESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVT 239
ES P RV+V ERGGWPTW GDST++FHR ADDGWWSIFR ++ G +P R+T
Sbjct: 178 ESVPENRVVVAERGGWPTWLGDSTVFFHRIADDGWWSIFRADLKDS-NLTGIQSSPIRIT 236
Query: 240 PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL----------TLNPNFHHYNPFV 289
PPG+HCFTPAA + R+AVATRRK ++RHIEI+DL ++NP+FHHYNPFV
Sbjct: 237 PPGLHCFTPAAIQNSNRIAVATRRKESDYRHIEIFDLETKTFQKITYSVNPDFHHYNPFV 296
Query: 290 SANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHD 349
S +S +IGYHRFRGES +G+ST PHL+ V SPV ++R+LRLNGSFPSFSPDG I FNH+
Sbjct: 297 SPDSCYIGYHRFRGESVQGESTYPHLDQVKSPVDDIRLLRLNGSFPSFSPDGDFIAFNHE 356
Query: 350 FE--LNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR 407
+ LN G+KI +S+GSKRW+L+K RT F NSWSPTEK+VIYTS GPIF+S TVQIAR
Sbjct: 357 LDGNLNGGVKIIRSNGSKRWSLLKGRTCFGNSWSPTEKNVIYTSIGPIFESVTKTVQIAR 416
Query: 408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA 467
+ F+ D +REEIP +KILTK ++GNNAFPSCSPDGKF+VFRSGR+G KNL+++DA
Sbjct: 417 IEFEPDHL-SKDREEIPFTLKILTKYDSGNNAFPSCSPDGKFIVFRSGRTGFKNLYIVDA 475
Query: 468 VNG-EFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526
VNG E +G +R+LT+G WIDTMP WSPKGDLIAFSSNRH+ N E F +YV+ DGSG+R
Sbjct: 476 VNGEEVDGGLRRLTEGEWIDTMPCWSPKGDLIAFSSNRHDAKNSEVFGIYVVNVDGSGVR 535
Query: 527 RIHVAGPEGSG-DVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVV 585
R+ + G G D +RER+NHVCFS DGEWLLFTANLG V AEPV PNQFQPYGDL+VV
Sbjct: 536 RVEI----GKGVDGERERLNHVCFSGDGEWLLFTANLGGVSAEPVGLPNQFQPYGDLFVV 591
Query: 586 KLDGSGLRRLTWNGYENGTPAWHPGNQL--DLGKLRLEDDIGDKLRGQFDEPLWISCDF 642
KLDGSGLRRLT N YENGTP WH G L + G ++ DKL+G F EPLWI+CD
Sbjct: 592 KLDGSGLRRLTCNAYENGTPTWHHGELLLCNDGDEDGDNGDWDKLKGAFQEPLWITCDI 650
>gi|358347274|ref|XP_003637684.1| Protein tolB [Medicago truncatula]
gi|355503619|gb|AES84822.1| Protein tolB [Medicago truncatula]
Length = 657
Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/660 (60%), Positives = 494/660 (74%), Gaps = 33/660 (5%)
Query: 3 PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFI 62
P GTIVF+T+GR YGFDVF + H+H LTDG SINFNAQF D +TI F+
Sbjct: 4 PIGTIVFSTIGRAQYGFDVFYTN---LKNHSNHDHCLTDGISINFNAQFTDDDQKTIVFV 60
Query: 63 SERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSAL 122
SER+GSPR Y ++ G+ + ELLPS ++F DRP RN KL+F+S HEQP+++FKSW+A+
Sbjct: 61 SERTGSPRFYLSKLGN-EPELLPSPLNAVFLDRPTIRNGKLYFVSTHEQPNELFKSWTAV 119
Query: 123 YSTDLKA---SKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQ 179
YST + + S FTRLTPYGVVDYSP+VS +G IAVASY +R W GE EL T+IVVF+
Sbjct: 120 YSTAINSAGTSTFTRLTPYGVVDYSPAVSLTGSLIAVASYGTRRWNGEIRELETEIVVFE 179
Query: 180 ESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVT 239
ES P RV+V ERGGWPTW GDST++FH+ A+DGWWSIFR+ P+ GFP+ RVT
Sbjct: 180 ESVPENRVVVSERGGWPTWLGDSTLFFHKIAEDGWWSIFRIDLPDT-NLNGFPVPSVRVT 238
Query: 240 PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL----------TLNPNFHHYNPFV 289
PPG+HCFTP A HDG +A+ATRR+ +FRHIEI++L T+NPNFHHYNPF+
Sbjct: 239 PPGLHCFTPVAMHDGNHIALATRRRESDFRHIEIFNLETQTFQKITETINPNFHHYNPFI 298
Query: 290 SANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHD 349
S +S ++GYHRFRGES++G+ST PHL+PV S +++LRLNGSFPSFSP+G I FNH
Sbjct: 299 SRDSCYLGYHRFRGESSQGESTYPHLDPVKSLDPNIQLLRLNGSFPSFSPNGDFIAFNHG 358
Query: 350 FEL--NAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR 407
F++ N+G+KI KS+GSKRW LIK R F ++WS TEK++IYT+ GPIFQ TVQIAR
Sbjct: 359 FDVRNNSGVKIIKSNGSKRWNLIKGRMCFGHAWSATEKNIIYTTIGPIFQLVSKTVQIAR 418
Query: 408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA 467
+ F N++EEIP +KILTK+++GNNAFPSCSPDGKF+VFRSGRSG KNL+++DA
Sbjct: 419 IEFD-SVHLTNDQEEIPYTLKILTKDDSGNNAFPSCSPDGKFVVFRSGRSGFKNLYIVDA 477
Query: 468 VNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR 527
VNGEF+G +R+LT+G WIDTMP WSPKGDLIAFSSNRH+ N +AF +YV++ DGSGLRR
Sbjct: 478 VNGEFDGGLRRLTEGEWIDTMPCWSPKGDLIAFSSNRHDGGNSQAFGIYVVRVDGSGLRR 537
Query: 528 IHVAGPEGSG-DVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVK 586
+ V G G D +RE +NHV FS DGEWLLFT NL + AEP S PNQ+QPYGDL+VVK
Sbjct: 538 VEV----GKGVDGEREMLNHVRFSGDGEWLLFTGNLVGLTAEPASIPNQYQPYGDLFVVK 593
Query: 587 LDGSGLRRLTWNGYENGTPAWHPGNQL-------DLGKLRLEDDIGDKLRGQFDEPLWIS 639
LDGSGLRRLT N YENGTPAWH G+ L D + DKL+G F+E LWI+
Sbjct: 594 LDGSGLRRLTCNAYENGTPAWHYGDLLLSNDDDDDDDDDDGDACDWDKLKGAFEESLWIT 653
>gi|326532988|dbj|BAJ89339.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 654
Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/657 (56%), Positives = 470/657 (71%), Gaps = 26/657 (3%)
Query: 2 EPKGTIVFTTVGRPYYGFDVFSIKSP----FVNAPKFHEHRLTDGTSINFNAQFVDGQDQ 57
EP GT+VF +VG +GFDVFS+ P V+A E R TDG S+NFNAQF D +
Sbjct: 6 EPTGTVVFASVGVTSFGFDVFSVAVPQTPESVSAAGLAERRHTDGVSVNFNAQFADDVGE 65
Query: 58 TIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFK 117
+AF+SER+GS ++ RP S + LP + SLFHDRP R +L+F+S+HE+P F+
Sbjct: 66 EVAFVSERTGSAGLFLCRPESERAVPLPVVEGSLFHDRPAVRGGRLYFVSSHEKPAAWFR 125
Query: 118 SWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVV 177
SW+A+Y+T+L + + R+TP GV D SP+VS SG+ +AVASY RPW +FHEL T++ V
Sbjct: 126 SWAAVYATELGSEETVRVTPQGVADMSPAVSTSGELLAVASYGERPWAFDFHELETEVAV 185
Query: 178 FQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSF-PENLEFLGFPIAPT 236
F+ +DP +RV+V RGGWPTW G+ T++FHR ADDGWWS+FRV PE LE G A T
Sbjct: 186 FRAADPARRVVVAARGGWPTWHGEGTVFFHRVADDGWWSVFRVDISPETLEPSG---AET 242
Query: 237 RVTPPGVHCFTPAAFHDGKR-LAVATRRKNRNFRHIEIYDL----------TLNPNFHHY 285
RVTPPGVHCFTPAA G R +AVATRRK RHIE++DL LNP HHY
Sbjct: 243 RVTPPGVHCFTPAAAGRGCRWIAVATRRKGLAKRHIELFDLETEQFTAVTSLLNPELHHY 302
Query: 286 NPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIV 345
NPF S + +GYHRFRG +G S IP+L+PV SPV +RMLR++GSFPSFSPD
Sbjct: 303 NPFFSPSGGRLGYHRFRGAGVQGDSMIPYLQPVRSPVSSIRMLRVHGSFPSFSPDAKHFA 362
Query: 346 FNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQI 405
N DF + G+ I ++DGSKRW L K FY SWSPTE V++TS GPIF++ +ATV++
Sbjct: 363 LNGDFFKSPGVTILRADGSKRWVLAKQPNLFYTSWSPTESGVVFTSIGPIFETPKATVRV 422
Query: 406 ARVSFQLDPSD-DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFV 464
AR+ F DPS+ ++R ++ VK LT+ E GN+AFP+ SP G+++VFRSGRSGHKNL++
Sbjct: 423 ARIEF--DPSELTDDRGDVDVAVKELTRPEAGNDAFPAVSPCGRWVVFRSGRSGHKNLYI 480
Query: 465 LDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG 524
+DA GE IR++TDG WIDTMPSWSP G+LIAFSSNRH P N FS+Y+++PDG+G
Sbjct: 481 VDAARGEET--IRRVTDGEWIDTMPSWSPDGELIAFSSNRHEPANAAVFSIYLVRPDGTG 538
Query: 525 LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYV 584
LRR+HVAGP GS + D+ERINHVCFS DG+WLLFTANLG VMAEP+S PNQFQPYGDLYV
Sbjct: 539 LRRVHVAGPAGSAEADKERINHVCFSPDGQWLLFTANLGGVMAEPISGPNQFQPYGDLYV 598
Query: 585 VKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEPLWISCD 641
+LDGSG+ RLT N YENGTP W P +D L L D GQFDEPLW++C+
Sbjct: 599 CRLDGSGVLRLTCNAYENGTPTWGPALGVD--SLSLGAPAADDSLGQFDEPLWLTCN 653
>gi|326491569|dbj|BAJ94262.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 654
Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/657 (56%), Positives = 468/657 (71%), Gaps = 26/657 (3%)
Query: 2 EPKGTIVFTTVGRPYYGFDVFSIKSP----FVNAPKFHEHRLTDGTSINFNAQFVDGQDQ 57
EP GT+VF +VG +GFDVFS+ P V+A E R TDG S+NFNAQF D +
Sbjct: 6 EPTGTVVFASVGVTSFGFDVFSVAVPQTPESVSAAGLAERRHTDGVSVNFNAQFADDVGE 65
Query: 58 TIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFK 117
+AF+SER+GS ++ RP S + LP + SLFHDRP R +L+F+S+HE+P F+
Sbjct: 66 EVAFVSERTGSAGLFLCRPESERAVPLPVVEGSLFHDRPAVRGGRLYFVSSHEKPAAWFR 125
Query: 118 SWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVV 177
SW+A+Y+T+L + + R+TP GV D SP+VS SG+ +AVASY RPW +FHEL T++ V
Sbjct: 126 SWAAVYATELGSEETVRVTPQGVADMSPAVSTSGELLAVASYGERPWAFDFHELETEVAV 185
Query: 178 FQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSF-PENLEFLGFPIAPT 236
F+ +DP +RV+V RGGWPTW G+ T++FHR ADDGWWS+FRV PE LE G A T
Sbjct: 186 FRAADPARRVVVAARGGWPTWHGEGTVFFHRVADDGWWSVFRVDISPETLEPSG---AET 242
Query: 237 RVTPPGVHCFTPAAFHDGKR-LAVATRRKNRNFRHIEIYDL----------TLNPNFHHY 285
RVTPPGVHCFTPAA G R +AVATRRK RHIE++DL LNP HHY
Sbjct: 243 RVTPPGVHCFTPAAAGRGCRWIAVATRRKGLAKRHIELFDLETEQFTAVTSLLNPELHHY 302
Query: 286 NPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIV 345
NPF S + +GYHRFRG +G S IP+L+PV SPV +RMLR++GSFPSFSPD
Sbjct: 303 NPFFSPSGGRLGYHRFRGAGVQGDSMIPYLQPVRSPVSSIRMLRVHGSFPSFSPDAKHFA 362
Query: 346 FNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQI 405
N DF + G+ I ++DGSKRW L K FY SWSPTE V++TS GPIF++ +ATV++
Sbjct: 363 LNGDFFKSPGVTILRADGSKRWVLAKQPNLFYTSWSPTESGVVFTSIGPIFETPKATVRV 422
Query: 406 ARVSFQLDPSD-DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFV 464
AR+ F DPS ++R ++ VK LT+ E GN+AFP+ SP G+++VFRSGRSGHKNL++
Sbjct: 423 ARIEF--DPSGLTDDRGDVDVAVKELTRPEAGNDAFPAVSPCGRWVVFRSGRSGHKNLYI 480
Query: 465 LDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG 524
+DA GE IR++TDG WIDTMPSWSP G+LIAFSSNRH P N FS+Y+++PDG+G
Sbjct: 481 VDAARGEET--IRRVTDGEWIDTMPSWSPDGELIAFSSNRHEPANAAVFSIYLVRPDGTG 538
Query: 525 LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYV 584
LRR+HVAGP GS + D+ERINHVCFS DG+WLLFTA LG VMAEP+S PNQFQPYGDLYV
Sbjct: 539 LRRVHVAGPAGSAEADKERINHVCFSPDGQWLLFTATLGGVMAEPISGPNQFQPYGDLYV 598
Query: 585 VKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEPLWISCD 641
+LDGSG+ RLT N YENGTP W P +D L L D GQFDEPLW++C+
Sbjct: 599 CRLDGSGVLRLTCNAYENGTPTWGPALGVD--SLSLGAPAADDSLGQFDEPLWLTCN 653
>gi|255548307|ref|XP_002515210.1| conserved hypothetical protein [Ricinus communis]
gi|223545690|gb|EEF47194.1| conserved hypothetical protein [Ricinus communis]
Length = 618
Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/597 (63%), Positives = 459/597 (76%), Gaps = 45/597 (7%)
Query: 84 LPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDL--KASKFTRLTPYGVV 141
LP IP SLFHDRP+ ++N+L+FISAH++PD+++KSW+ALY+ DL + + TRLTPYGV+
Sbjct: 28 LPGIPESLFHDRPIIKDNRLYFISAHQEPDKLYKSWNALYAIDLNQEGNSVTRLTPYGVI 87
Query: 142 DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGD 201
DYSP+VS SGK+IAV SY SR W EF L TDIVVF++SDP RV+VCERGGWPTWSGD
Sbjct: 88 DYSPAVSLSGKYIAVGSYGSRIWDVEFQMLTTDIVVFKQSDPENRVVVCERGGWPTWSGD 147
Query: 202 STIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVAT 261
STIYFHR+ADDG+WSIF+V+F ++L L P AP RVTPPGVHC TPAA HDGKR+ VAT
Sbjct: 148 STIYFHRKADDGFWSIFQVNFSDDLSEL--PCAPVRVTPPGVHCLTPAAMHDGKRIVVAT 205
Query: 262 RRKNRNFRHIEIYDLT----------LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQST 311
RR+ + RHIEI+D+ +NP+F HYNPFVS +S FIGYHRFRGES G++T
Sbjct: 206 RRRGKVHRHIEIFDIVSKTFYPVTQLINPSFQHYNPFVSQDSLFIGYHRFRGESAPGETT 265
Query: 312 IPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI- 370
IP+LEPV SP++ +R+LRLNGSF S+SPD I FN L+ G+ I +S+GSKRWTL
Sbjct: 266 IPNLEPVKSPIEGIRLLRLNGSFASYSPDSDYIAFNAG--LSQGLHIVRSNGSKRWTLFS 323
Query: 371 KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD-DNNREEIPCDVKI 429
+DRTAFY SWSPTEK+VIYT+ GP+F TVQIARV+F DPSD +R EIPCDVK+
Sbjct: 324 RDRTAFYTSWSPTEKNVIYTTLGPVFAHVNRTVQIARVTF--DPSDLKPDRNEIPCDVKM 381
Query: 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489
LT E++GNNAFP+CSPDGK+LVFRSGRSGHKNL+++DAV GEF GDIR LT+G IDTMP
Sbjct: 382 LTGEDSGNNAFPACSPDGKYLVFRSGRSGHKNLYIMDAVEGEFKGDIRPLTEGACIDTMP 441
Query: 490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVD---RERINH 546
WSPKGDLIAFSSNRH P++ FS+YVIKPDGSGLRRIH+ G E + + ERINH
Sbjct: 442 CWSPKGDLIAFSSNRHKPEHANPFSIYVIKPDGSGLRRIHLEGSERLSEEEREWMERINH 501
Query: 547 VCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPA 606
V FS+DGEWLLFTANLG + AEPV+ P Q QPYGD+YV +LDGSGLRRLTWNGYENGTP
Sbjct: 502 VTFSSDGEWLLFTANLGGLSAEPVAVPRQIQPYGDIYVARLDGSGLRRLTWNGYENGTPV 561
Query: 607 WHPG-----------NQLDLGKLR---LEDDIG--------DKLRGQFDEPLWISCD 641
W+PG QL G LR L +++G +KL GQF++ W+S +
Sbjct: 562 WYPGFHEVQSHPENKPQLISGNLRNLKLHEEVGKNLHSVDEEKLSGQFNDLTWLSIE 618
>gi|414887818|tpg|DAA63832.1| TPA: putative WD40-like beta propeller repeat family protein [Zea
mays]
Length = 667
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/672 (54%), Positives = 474/672 (70%), Gaps = 37/672 (5%)
Query: 1 MEPKGTIVFTTVGRPYYGFDVFSIKSPF-------VNAPKFHEHRLTDGTSINFNAQFVD 53
MEP GTIVF +VG +GFDVFS P V+A E R TDG S+NFNAQF D
Sbjct: 1 MEPAGTIVFASVGVTNFGFDVFSATVPAPTSAEAGVSAEDLDERRHTDGISVNFNAQFAD 60
Query: 54 GQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPD 113
+AF+SER+G+ ++ +RPGS + + LP+ SLFHDRP R +++F+SAHE+PD
Sbjct: 61 DAGDAVAFVSERTGAASLFLSRPGS-EPDPLPAAEGSLFHDRPTVRGGRVYFVSAHEKPD 119
Query: 114 QIFKSWSALYSTDLKASKF-------TRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPG 166
+ F+SW+A+Y+ +L A + RLTP GVVD SP+VS SG +AVASY RPW
Sbjct: 120 RPFRSWAAVYAAELGAGRERNPEPQPQRLTPRGVVDMSPAVSASGDLLAVASYGDRPWAF 179
Query: 167 EFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSF-PEN 225
+F L T++ VF+ SDP++R +V RGGWP W GD+ ++FHR ADDGWWS+FRV P+
Sbjct: 180 DFRALETEVAVFRASDPSRRAVVAARGGWPAWHGDAALFFHRAADDGWWSVFRVGVSPDT 239
Query: 226 LEFLGFPIAPTR-VTPPGVHCFTPAA--FHDGKRLAVATRRKNRNFRHIEIYDLT----- 277
L+ P P R VTPPG+HCFTPAA G+ +AVATRRK R RH+E++DL
Sbjct: 240 LQ----PTGPERRVTPPGLHCFTPAAPARGGGRWIAVATRRKGRAQRHVELFDLETQRFS 295
Query: 278 -----LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNG 332
L+P HHYNPF + + +GYHRFRG G S +PHL+PV SPV+ +RMLR++G
Sbjct: 296 PLTELLSPGLHHYNPFFTPSGGRVGYHRFRGAGAPGDSLVPHLQPVRSPVRSIRMLRVHG 355
Query: 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTST 392
+FPSFSPDG I N DF G+ + +SDGS+RWT+ K+ FY +WSPTE+ V++TS
Sbjct: 356 TFPSFSPDGAHIAVNGDFFSTPGVSVLRSDGSRRWTVSKEPDLFYTTWSPTERGVVFTSK 415
Query: 393 GPIFQSERATVQIARVSFQ-LDPSDDNNRE-EIPCDVKILTKEETGNNAFPSCSPDGKFL 450
GPIF++ +ATV+IARV F D +DD E E+ V+ LT+ E GN+AFP+ SP G++L
Sbjct: 416 GPIFETPKATVRIARVEFDPADLTDDGRGEGEVRATVRPLTRPEAGNDAFPAVSPCGRWL 475
Query: 451 VFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV 510
VFRSGR+GHKNL+V+D GE G +R+LT+G WIDTMPSWSP G LIAFSSNRH+P N
Sbjct: 476 VFRSGRTGHKNLYVVDTARGE-EGGVRRLTEGEWIDTMPSWSPDGSLIAFSSNRHDPANP 534
Query: 511 EAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV 570
FS+Y+++PDGSGLRR++VAG EGS + D+ERINHVCFS D +WLLFTANLG+V+AEP+
Sbjct: 535 AVFSIYLVRPDGSGLRRVYVAGAEGSAEADKERINHVCFSPDSQWLLFTANLGSVVAEPI 594
Query: 571 SWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQ-LDLGKLRLEDDIGDKLR 629
S PNQFQPYGDLYV +LDGS LRRLT N YENGTP W P + L L L + G+
Sbjct: 595 SGPNQFQPYGDLYVCRLDGSDLRRLTCNAYENGTPVWGPASAGLGLESLSMGPPSGEDAL 654
Query: 630 GQFDEPLWISCD 641
GQFDEPLW++CD
Sbjct: 655 GQFDEPLWLTCD 666
>gi|115473615|ref|NP_001060406.1| Os07g0638100 [Oryza sativa Japonica Group]
gi|27261082|dbj|BAC45195.1| unknown protein [Oryza sativa Japonica Group]
gi|113611942|dbj|BAF22320.1| Os07g0638100 [Oryza sativa Japonica Group]
Length = 659
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/662 (56%), Positives = 464/662 (70%), Gaps = 25/662 (3%)
Query: 1 MEPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIA 60
MEP GTIVF TVG +GFDVFS P + E R TDG S+NFNAQFVD + +A
Sbjct: 1 MEPTGTIVFATVGVTNFGFDVFSAAVPLPPMEEDAERRHTDGVSVNFNAQFVDDGGEEVA 60
Query: 61 FISERSGSPRIYQTRPG-SSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSW 119
F+SER G+ +++ RPG + E LP++ SLFHDRP R +L+F+SAHEQP F+SW
Sbjct: 61 FVSERGGAAGLFRCRPGPEQRAEPLPTVEGSLFHDRPTVRGGRLYFVSAHEQPPAPFRSW 120
Query: 120 SALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQ 179
+A+Y+T++ + + R++P GVVD SP+VS SG+ +AVASY RPW +F L T++ VF+
Sbjct: 121 AAVYATEIGSKETVRVSPPGVVDMSPAVSDSGELVAVASYGDRPWAFDFRVLETEVAVFR 180
Query: 180 ESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSF-PENLEFLGFPIAPTRV 238
+DP +RV+V RGGWPTW G+ T++FHR ADDGWWS+FRV PE LE G RV
Sbjct: 181 AADPARRVVVVGRGGWPTWHGEGTVFFHRVADDGWWSVFRVDVSPETLEPTG---GERRV 237
Query: 239 TPPGVHCFTPAAFHDGKR---LAVATRRKNRNFRHIEIYDLT----------LNPNFHHY 285
TPPG+HCFTPAA G +AVATRRK R RH+E++DL LNP HHY
Sbjct: 238 TPPGLHCFTPAAVGRGGGGRWIAVATRRKGRAQRHVELFDLETESFSPLTERLNPELHHY 297
Query: 286 NPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIV 345
NPF S + + +GYHRFRG G S +P+L+PV SPV LRMLR+ G+FPSFSPD +
Sbjct: 298 NPFFSPSGDRVGYHRFRGAGARGDSVVPYLQPVQSPVSSLRMLRVYGTFPSFSPDAAHLA 357
Query: 346 FNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQI 405
N DF G+ I +SDG+KRW L ++ FY SWSP E VI+TS GPIF++ +ATV+I
Sbjct: 358 MNGDFFKTPGVTILRSDGAKRWVLTREPNLFYTSWSPAESGVIFTSMGPIFETTKATVRI 417
Query: 406 ARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVL 465
AR+ F R+E+ +K+LT+ E GN+AFP+ SP GK++VFRSGRSGHKNL+++
Sbjct: 418 ARLEFDAG-ELTTGRDEVAATLKVLTRPEAGNDAFPAVSPCGKWVVFRSGRSGHKNLYIV 476
Query: 466 DAVNGE----FNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD 521
DA +GE G IR+LTDG WIDTMPSWSP G LIAFSSNRH+P N FS+Y+++PD
Sbjct: 477 DAAHGEDVGAGEGTIRRLTDGEWIDTMPSWSPDGSLIAFSSNRHDPTNAAVFSIYLVRPD 536
Query: 522 GSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGD 581
GSGLRR+HVAGP GS DRERINHVCFS D WLLFTAN G VMAEP+S PNQFQPYGD
Sbjct: 537 GSGLRRVHVAGPAGSAAADRERINHVCFSPDSRWLLFTANFGGVMAEPISAPNQFQPYGD 596
Query: 582 LYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLG--KLRLEDDIGDKLRGQFDEPLWIS 639
LYV +LDGSGL RLT N YENGTPAW P + G L L GD+ G+FDEPLW++
Sbjct: 597 LYVCRLDGSGLVRLTCNAYENGTPAWGPASSPAAGLESLSLGPGAGDESLGEFDEPLWLT 656
Query: 640 CD 641
CD
Sbjct: 657 CD 658
>gi|242046452|ref|XP_002461097.1| hypothetical protein SORBIDRAFT_02g040640 [Sorghum bicolor]
gi|241924474|gb|EER97618.1| hypothetical protein SORBIDRAFT_02g040640 [Sorghum bicolor]
Length = 669
Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/673 (54%), Positives = 478/673 (71%), Gaps = 37/673 (5%)
Query: 1 MEPKGTIVFTTVGRPYYGFDVFSIKSPF---------VNAPKFHEHRLTDGTSINFNAQF 51
MEP GTIVF +VG +GFDVFS+ P V+A + E R TDG S+NFNAQF
Sbjct: 1 MEPTGTIVFASVGVTNFGFDVFSVAVPTPASAEAEAGVSAQELDERRHTDGVSVNFNAQF 60
Query: 52 VDGQDQTIAFISERSGSPRIYQTRPGSSKT---ELLPSIPCSLFHDRPVARNNKLFFISA 108
D +AF+SER+G+ ++ +RP S++ E LP+ SLFHDRP R +++F+SA
Sbjct: 61 ADDAGDAVAFVSERTGAASLFLSRPPGSESDRPEPLPAAEGSLFHDRPTVRGGRVYFVSA 120
Query: 109 HEQPDQIFKSWSALYSTDL--KASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPG 166
HE+PD+ F+SW+A+Y+ + + ++ RLTP GVVD SP+VS SG IAVASY RPW
Sbjct: 121 HEKPDRTFQSWAAVYAARVGERKAEPERLTPRGVVDMSPAVSASGDLIAVASYGDRPWAF 180
Query: 167 EFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSF-PEN 225
+F L T++ VF+ +DP++R +V RGGWP W GDS ++FHR ADDGWWS+FRV P+
Sbjct: 181 DFRVLETEVAVFRAADPSRRAVVAPRGGWPAWHGDSALFFHRVADDGWWSVFRVGVSPDT 240
Query: 226 LEFLGFPIAPTR-VTPPGVHCFTPAAFHDG---KRLAVATRRKNRNFRHIEIYDL----- 276
L+ P P R VTPPG+HCFTPAA + +AVATRRK R RH+E++DL
Sbjct: 241 LQ----PTGPERRVTPPGLHCFTPAAPAAAGGGRWIAVATRRKGRAQRHVELFDLEMERF 296
Query: 277 -----TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLN 331
LNP HHYNPF S + +GYHRFRG G + +PHL+PV SPV +RMLR+
Sbjct: 297 SPLTELLNPGLHHYNPFFSPSGARLGYHRFRGAGAPGDALVPHLQPVRSPVPSIRMLRVY 356
Query: 332 GSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTS 391
G+FPSFSPD + N DF + GI++ +SDGSKRWT+ K+ FY +WSPTE V++TS
Sbjct: 357 GTFPSFSPDAAHLAVNGDFFMTPGIRVLRSDGSKRWTVSKEPNLFYTTWSPTEPGVVFTS 416
Query: 392 TGPIFQSERATVQIARVSFQ-LDPSDDNNREEIP-CDVKILTKEETGNNAFPSCSPDGKF 449
GPIF++ +ATV+IARV F D +DD++R E+ V+ LT+ E GN+AFP+ SP G++
Sbjct: 417 MGPIFETTKATVRIARVEFDPADLTDDDSRVEVGVATVRPLTRPEAGNDAFPAVSPCGRW 476
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDN 509
LVFRSGR+GHKNL+V+D GE +G + +LT+G WIDTMPSWSP G LIAFSSNRH+P N
Sbjct: 477 LVFRSGRTGHKNLYVVDTARGE-DGGVLRLTEGEWIDTMPSWSPDGSLIAFSSNRHDPAN 535
Query: 510 VEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEP 569
FS+Y+++PDGSGLRR++VAGPEGS + D+ERINHVCFS D +WLLFTANLG+V+AEP
Sbjct: 536 PAVFSIYLVRPDGSGLRRVYVAGPEGSAEADKERINHVCFSPDSQWLLFTANLGSVVAEP 595
Query: 570 VSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQ-LDLGKLRLEDDIGDKL 628
+S PNQFQPYGDLYV +LDGSGLRRLT N YENGTPAW P + L L L + G+
Sbjct: 596 ISGPNQFQPYGDLYVCRLDGSGLRRLTCNAYENGTPAWGPASAGLGLESLAIGPPAGEDA 655
Query: 629 RGQFDEPLWISCD 641
GQFDEPLW++CD
Sbjct: 656 LGQFDEPLWLTCD 668
>gi|125559315|gb|EAZ04851.1| hypothetical protein OsI_27029 [Oryza sativa Indica Group]
Length = 659
Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/662 (55%), Positives = 460/662 (69%), Gaps = 25/662 (3%)
Query: 1 MEPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIA 60
MEP GTIVF TVG +GFDVFS P + E R TDG S+NFNAQFVD + +A
Sbjct: 1 MEPTGTIVFATVGVTNFGFDVFSAAVPLPPMEEDAERRHTDGVSVNFNAQFVDDGGEEVA 60
Query: 61 FISERSGSPRIYQTRPG-SSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSW 119
F+SER G+ +++ RPG + E LP++ SLFHDRP R +L+F+SAHEQP F+SW
Sbjct: 61 FVSERGGAAGLFRCRPGPEQRAEPLPTVEGSLFHDRPTVRGGRLYFVSAHEQPPAPFRSW 120
Query: 120 SALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQ 179
+A+Y+T++ + + R++P GVVD SP+VS SG+ +AVASY RPW +F L T++ VF+
Sbjct: 121 AAVYATEIGSKETVRVSPPGVVDMSPAVSDSGELVAVASYGDRPWAFDFRVLETEVAVFR 180
Query: 180 ESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSF-PENLEFLGFPIAPTRV 238
+DP +RV+V RGGWPTW G+ T++FHR ADDGWWS+FRV PE LE G RV
Sbjct: 181 AADPARRVVVVGRGGWPTWHGEGTVFFHRVADDGWWSVFRVDVSPETLEPTG---GERRV 237
Query: 239 TPPGVHCFTPAAFHDGKRLAVA---TRRKNRNFRHIEIYDLT----------LNPNFHHY 285
TPPG+HCFTPAA G TRRK R RH+E++DL LNP HHY
Sbjct: 238 TPPGLHCFTPAAVGRGGGGRWIAGATRRKGRAQRHVELFDLETESFSPLTERLNPELHHY 297
Query: 286 NPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIV 345
NPF S + + +GYHRFRG G S +P+L+PV SPV LRMLR+ G+FPSFSPD +
Sbjct: 298 NPFFSPSGDRVGYHRFRGAGARGDSVVPYLQPVRSPVSSLRMLRVYGTFPSFSPDAAHLA 357
Query: 346 FNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQI 405
N DF G+ I +SDG+KRW L ++ FY SWSP E VI+TS GPIF++ +ATV+I
Sbjct: 358 MNGDFFKTPGVTILRSDGAKRWVLTREPNLFYTSWSPAESGVIFTSMGPIFETTKATVRI 417
Query: 406 ARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVL 465
AR+ F R+E+ +K+LT+ E GN+AFP+ SP GK++VFRSGRSGHKNL+++
Sbjct: 418 ARLEFDAG-ELTTGRDEVAATLKVLTRPEAGNDAFPAVSPCGKWVVFRSGRSGHKNLYIV 476
Query: 466 DAVNGE----FNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD 521
DA +GE G IR+LTDG WIDTMPSWSP G LIAFSSNRH+P N FS+Y+++PD
Sbjct: 477 DAAHGEDVGAGEGTIRRLTDGEWIDTMPSWSPDGSLIAFSSNRHDPTNAAVFSIYLVRPD 536
Query: 522 GSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGD 581
GSGLRR+HVAGP GS DRERINHVCFS D WLLFTAN G VMAEP+S PNQFQPYGD
Sbjct: 537 GSGLRRVHVAGPAGSAAADRERINHVCFSPDSRWLLFTANFGGVMAEPISAPNQFQPYGD 596
Query: 582 LYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLG--KLRLEDDIGDKLRGQFDEPLWIS 639
LYV +LDGSGL RLT N YENGTPAW P + G L L GD+ G+FDEPLW++
Sbjct: 597 LYVCRLDGSGLVRLTCNAYENGTPAWGPASSPAAGLESLSLVPGAGDESLGEFDEPLWLT 656
Query: 640 CD 641
CD
Sbjct: 657 CD 658
>gi|357121777|ref|XP_003562594.1| PREDICTED: uncharacterized protein LOC100822199 [Brachypodium
distachyon]
Length = 674
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/669 (54%), Positives = 469/669 (70%), Gaps = 32/669 (4%)
Query: 2 EPKGTIVFTTVGRPYYGFDVFSIKSP----FVNAPKFHEHRLTDGTSINFNAQFVD---G 54
+P GTI F +VG +GFDVFS+ P A + E TDG S+NFNAQF D G
Sbjct: 8 QPTGTIAFASVGVTSFGFDVFSVAVPQSPETTTAEELAERCHTDGVSVNFNAQFTDDEAG 67
Query: 55 QDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQ 114
+++ +AF+SER+GS ++ RPG T L P++ SLFHDRP R +L+F+SAHE+P
Sbjct: 68 EEEEVAFVSERTGSAALFLCRPGGRATPL-PAVEESLFHDRPTLRRGRLYFVSAHEKPPG 126
Query: 115 I-FKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFH-ELN 172
F+SW+ALY+TDL++ + +R+TP GVVD SP+VS SG+ +AVASY RPW EF L+
Sbjct: 127 APFRSWAALYATDLESQETSRVTPEGVVDMSPAVSPSGELVAVASYGDRPWAFEFRGALD 186
Query: 173 TDIVVFQESDPNKRVIV-CERG-GWPTWSGDSTIYFHRQADDGWWSIFRVSF-PENLEFL 229
TD+ VF+ ++P +RV+V RG GWP W G+S + F+R A DGWWS+FRV PE L
Sbjct: 187 TDVAVFRAAEPARRVVVSAARGAGWPAWHGESAVLFNRVAPDGWWSVFRVDLDPETLS-- 244
Query: 230 GFPIAPTRVTPPGVHCFTPAAF--HDGKRLAVATRRKNRNFRHIEIYDLT---------- 277
P A TRVTPPGVHCFTP A ++ + +AVATRRK + R IE++DL
Sbjct: 245 PSPAAETRVTPPGVHCFTPTASGNNNHRWIAVATRRKGHSHRQIELFDLDTSQFTPITTF 304
Query: 278 LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSF 337
LNP HHYNPF S + +GYHRFRG G+S IP+L PV +PV LRMLR++GSFPSF
Sbjct: 305 LNPKIHHYNPFFSPSGNRLGYHRFRGHGAPGESKIPYLNPVRTPVSSLRMLRVHGSFPSF 364
Query: 338 SPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQ 397
SPD + N DF + G+ + KSDGS+RW + FY SWSPTE V++TS GPIF+
Sbjct: 365 SPDAKHLALNGDFFKSPGVTVLKSDGSRRWVVADQPGLFYTSWSPTEPGVVFTSMGPIFE 424
Query: 398 SERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRS 457
S +ATV+IARV F DNN +++ +K+LT+ E GN+AFP+ SP G+++VFRSGRS
Sbjct: 425 SPKATVRIARVEFDPAQLRDNNNDKVDVALKVLTRPEAGNDAFPAVSPCGRWVVFRSGRS 484
Query: 458 GHKNLFVLDAVNGE---FNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFS 514
GHKNL+++DA +GE I++LTDG WIDTMP W+P G L+AFSSNRH+P N FS
Sbjct: 485 GHKNLYIIDAAHGENEPATAPIQRLTDGEWIDTMPCWAPDGKLVAFSSNRHDPGNAAVFS 544
Query: 515 LYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPN 574
+Y+++PDG+GLRR+HVAGP GS + D+ERINHVCFS DGEWLLFTANLG V AEPVS PN
Sbjct: 545 IYLVRPDGTGLRRVHVAGPPGSEEADKERINHVCFSPDGEWLLFTANLGGVNAEPVSGPN 604
Query: 575 QFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLD--LGKLRLEDDIGDKLRGQF 632
QFQPYGDLYV +LDGSGL RLT N YENGTPAW P L+ +G L L + + G+F
Sbjct: 605 QFQPYGDLYVCRLDGSGLVRLTCNAYENGTPAWGPALDLEDGVGSLGLGNPAAEDSLGEF 664
Query: 633 DEPLWISCD 641
DEPLW++CD
Sbjct: 665 DEPLWLTCD 673
>gi|125601237|gb|EAZ40813.1| hypothetical protein OsJ_25290 [Oryza sativa Japonica Group]
Length = 594
Score = 609 bits (1571), Expect = e-171, Method: Compositional matrix adjust.
Identities = 324/658 (49%), Positives = 408/658 (62%), Gaps = 82/658 (12%)
Query: 1 MEPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIA 60
MEP GTIVF TVG +GFDVFS P + E R TDG S+NFNAQFVD + +A
Sbjct: 1 MEPTGTIVFATVGVTNFGFDVFSAAVPLPPMEEDAERRHTDGVSVNFNAQFVDDGGEEVA 60
Query: 61 FISERSGSPRIYQTRPG-SSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSW 119
F+SER G+ +++ RPG + E LP++ SLFHDRP R +L+F+SAHEQP F+SW
Sbjct: 61 FVSERGGAAGLFRCRPGPEQRAEPLPTVEGSLFHDRPTVRGGRLYFVSAHEQPPAPFRSW 120
Query: 120 SALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQ 179
+A+Y+T++ + + R++P GVVD SP+VS SG+ +AVASY RPW +F L T++ VF+
Sbjct: 121 AAVYATEIGSKETVRVSPPGVVDMSPAVSDSGELVAVASYGDRPWAFDFRVLETEVAVFR 180
Query: 180 ESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSF-PENLEFLGFPIAPTRV 238
+DP +RV+V RGGWPTW G+ T++FHR ADDGWWS+FRV PE LE G RV
Sbjct: 181 AADPARRVVVVGRGGWPTWHGEGTVFFHRVADDGWWSVFRVDVSPETLEPTG---GERRV 237
Query: 239 TPPGVHCFTPAAFHDGKR---LAVATRRKNRNFRHIEIYDLT----------LNPNFHHY 285
TPPG+HCFTPAA G +AVATRRK R RH+E++DL LNP HHY
Sbjct: 238 TPPGLHCFTPAAVGRGGGGRWIAVATRRKGRAQRHVELFDLETESFSPLTERLNPELHHY 297
Query: 286 NPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIV 345
NPF S + + +GYHRFRG G S +P+L+PV SPV LRMLR+ G+FPSFSPD +
Sbjct: 298 NPFFSPSGDRVGYHRFRGAGARGDSVVPYLQPVQSPVSSLRMLRVYGTFPSFSPDAAHLA 357
Query: 346 FNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQI 405
N DF G+ I +SDG+KRW L ++ FY SWSP E VI+TS GPIF++ +ATV+I
Sbjct: 358 MNGDFFKTPGVTILRSDGAKRWVLTREPNLFYTSWSPAESGVIFTSMGPIFETTKATVRI 417
Query: 406 ARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVL 465
AR+ F R+E+ +K+LT+ E GN
Sbjct: 418 ARLEFDAG-ELTTGRDEVAATLKVLTRPEAGN---------------------------- 448
Query: 466 DAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL 525
D P+ SP G + F +Y+++PDGSGL
Sbjct: 449 --------------------DAFPAVSPCGKWVVFR-------------IYLVRPDGSGL 475
Query: 526 RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVV 585
RR+HVAGP GS DRERINHVCFS D WLLFTAN G VMAEP+S PNQFQPYGDLYV
Sbjct: 476 RRVHVAGPAGSAAADRERINHVCFSPDSRWLLFTANFGGVMAEPISAPNQFQPYGDLYVC 535
Query: 586 KLDGSGLRRLTWNGYENGTPAWHPGNQLDLG--KLRLEDDIGDKLRGQFDEPLWISCD 641
+LDGSGL RLT N YENGTPAW P + G L L GD+ G+FDEPLW++CD
Sbjct: 536 RLDGSGLVRLTCNAYENGTPAWGPASSPAAGLESLSLGPGAGDESLGEFDEPLWLTCD 593
>gi|302806842|ref|XP_002985152.1| hypothetical protein SELMODRAFT_121622 [Selaginella moellendorffii]
gi|300146980|gb|EFJ13646.1| hypothetical protein SELMODRAFT_121622 [Selaginella moellendorffii]
Length = 669
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 312/673 (46%), Positives = 413/673 (61%), Gaps = 60/673 (8%)
Query: 5 GTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFV--DGQDQTIAFI 62
GT+VF +VGR +Y FD F++ + E LTDG S+NFNAQFV D + + F+
Sbjct: 7 GTVVFASVGRSHYAFDAFAL-----DIATLKEEVLTDGVSVNFNAQFVEDDPKPSAVIFV 61
Query: 63 SERSGSPRIY---------QTRPGSSKTELLPSIPCS---LFHDRP-VARNNKLFFISAH 109
SER+G+ I+ R S T L S+ L+ DRP VA ++ F S
Sbjct: 62 SERTGASNIFLRRQSLTSKSDRDDHSSTLKLGSLDAGDGFLYCDRPCVAGGGRIIFASTK 121
Query: 110 EQPD---QIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPG 166
P+ + + +A++S L+ RLTP GV DYSP++S S K+IAVAS +PW G
Sbjct: 122 SSPEISQNLRQPSTAIFSACLRIGLTRRLTPEGVADYSPALSPSKKWIAVASNAGKPWSG 181
Query: 167 EFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQA-DDGWWSIFRVSFPEN 225
E HEL T + +F+ D + R +V ERGGWPTWS + TI+FH+++ +D WWSI++ PE+
Sbjct: 182 EIHELETSLWIFKAEDGSSRKMVVERGGWPTWSDERTIFFHKRSPEDDWWSIYKAVLPES 241
Query: 226 LEFL---GFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT----- 277
LE L A RVTPPGVH FTPAA + VAT R N RHIE++DL+
Sbjct: 242 LEDLDAAKIDQAVERVTPPGVHAFTPAASRTSNWIVVATHRSNTTSRHIELFDLSKGSFL 301
Query: 278 -----LNPNFHHYNPFVSANSE-FIGYHRFRGESTEGQSTIPHLEPVASPV-KELRMLRL 330
L+P HH+NPFVSA S+ IGYHR R + S +P LE VA P ++ ++R+
Sbjct: 302 PVTLELHPELHHFNPFVSATSDTLIGYHRCRNDG----SIVPTLEHVACPANNDITLVRI 357
Query: 331 NGSFPSFSPDGGLIVFNHDFEL-NAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIY 389
+G+FPS S DG LI +N DFE ++G+ +AK DGS R ++ AF W+P + IY
Sbjct: 358 DGAFPSISSDGALIAYNTDFEASDSGVMVAKLDGSNRKRILTG-LAFTTCWNPCKPGTIY 416
Query: 390 TSTGPIFQSERATVQIARVSFQLDPSDDN---NREEIPCDVKILTKEETGNNAFPSCSPD 446
TS G IF ERA V I ++F + +D+ + + VK+L+K T NNAFPSCSPD
Sbjct: 417 TSVGHIFAEERAMVHIVSLTFDVTALEDHSSSSSSTLESSVKVLSKPGTNNNAFPSCSPD 476
Query: 447 GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHN 506
GK LVFRSGRSGHKNL+++DA GE +G IR LT+GPW+DTMP WSP G+ IAFSS+R
Sbjct: 477 GKNLVFRSGRSGHKNLYIMDAELGE-DGGIRALTEGPWVDTMPCWSPDGNWIAFSSSRDG 535
Query: 507 PDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVM 566
P N E F++Y++ PDGS L R+ PE S R R NHVCFS D + LLFTA+ G +
Sbjct: 536 PSN-EFFAIYLVHPDGSELHRVF---PESS---TRGRCNHVCFSPDSQTLLFTADCGGIS 588
Query: 567 AEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGD 626
AEPVS NQFQPYG+L+ KLDGS LRR T N YE+GTP W P +LD + + G
Sbjct: 589 AEPVSLANQFQPYGELFSCKLDGSELRRWTHNAYEDGTPCWGP-LRLDPSSISKQ---GQ 644
Query: 627 KLRGQFDEPLWIS 639
+L F + LW+S
Sbjct: 645 ELHANFQDCLWLS 657
>gi|225459635|ref|XP_002285877.1| PREDICTED: uncharacterized protein LOC100267814 isoform 2 [Vitis
vinifera]
Length = 680
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 293/664 (44%), Positives = 379/664 (57%), Gaps = 88/664 (13%)
Query: 1 MEPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFV-------- 52
M+P +I+FTT+GR Y FDVFS+ + + E R+TDG S+NFN F
Sbjct: 1 MDPTTSIIFTTLGRSDYAFDVFSLPT-LGPSTIADELRITDGQSVNFNGHFPSSPIISLL 59
Query: 53 --------------DGQDQTIAFISERSGSPRIY-----------QTRPGSSKTELLPSI 87
D QTI +++ER+GS IY R + +T + +
Sbjct: 60 ANQTLVESSSVKRPDESLQTI-YVTERNGSSNIYLDIIYYDTPTNSRRRSALETAVRVEV 118
Query: 88 PC-----------SLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLT 136
P DRP L ++S HE KSW+A+YST L RLT
Sbjct: 119 PLLGTNTEQSDGRISMKDRPSLVGEDLVYVSTHEDSGVPRKSWAAVYSTHLPTGSTRRLT 178
Query: 137 PYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWP 196
PYGV DYSP+VS SG + AVASY R W GE EL+TDI VF+ D ++R V E GGWP
Sbjct: 179 PYGVADYSPAVSPSGVWTAVASYGERGWGGEVEELSTDIYVFRTRDGSERTKVVEHGGWP 238
Query: 197 TWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKR 256
W DST++FHR+ DGWWSI+R E+ + RVTPPG+H FTPA K
Sbjct: 239 CWVDDSTLFFHRRGSDGWWSIYRAILTES-------VVIERVTPPGLHAFTPATSPGNKN 291
Query: 257 -LAVATRRKNRNFRHIEIYDLTLN----------PNFHHYNPFVSANSEFIGYHRFRGES 305
+AVATRR N ++RHIE++DL N P HH+NPF+S +S IGYHR RG+S
Sbjct: 292 FIAVATRRLNSDYRHIELFDLLSNEFRELTRRISPQTHHFNPFISPDSTRIGYHRCRGDS 351
Query: 306 TEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK 365
G+S LE + SP+ E+ + R +GSFPSFSP G I + E G+ + DGS
Sbjct: 352 NGGKSPHLLLENLKSPLPEISLFRFDGSFPSFSPGGDRIAY---VEF-PGVYVVNRDGSG 407
Query: 366 RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPC 425
R + AF +W K V+YTS GP F +E V I VS +D D P
Sbjct: 408 RREVFSG-IAFSTAWDHKRKGVVYTSAGPTFATESTKVDI--VSINVDDVDQ------PS 458
Query: 426 DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWI 485
K+ T E NNAFPS SPDGK++ FRSGRSG+KNL+++DAV+GE G I +LT+GPW
Sbjct: 459 YKKLTTGGE--NNAFPSPSPDGKWIAFRSGRSGYKNLYIMDAVDGE-RGGIHRLTEGPWT 515
Query: 486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERIN 545
DTM +WSP GD I F+S+R NP F LYVI P+G+GLR++ +G G R N
Sbjct: 516 DTMCNWSPDGDWIVFASDRENPGG-GGFELYVIHPNGTGLRKVVHSGSAG-------RTN 567
Query: 546 HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTP 605
H FS DG+ ++FT++ AV AEP+S + +QPYGD++VV LDGSGL RLT N YE+GTP
Sbjct: 568 HPWFSPDGKSIVFTSDYAAVSAEPISNAHHYQPYGDIFVVNLDGSGLHRLTHNSYEDGTP 627
Query: 606 AWHP 609
AW P
Sbjct: 628 AWAP 631
>gi|302823172|ref|XP_002993240.1| hypothetical protein SELMODRAFT_136782 [Selaginella moellendorffii]
gi|300138910|gb|EFJ05661.1| hypothetical protein SELMODRAFT_136782 [Selaginella moellendorffii]
Length = 717
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 287/713 (40%), Positives = 392/713 (54%), Gaps = 105/713 (14%)
Query: 4 KGTIVFTTVGRPYYGFDVFSIK-SPF----VNAPKFHEHRLTDGTSINFNAQFVDGQDQT 58
+GT+ F +VGR Y FDVF + P+ + E R TDG S+N+N VD +
Sbjct: 27 EGTVAFASVGRARYAFDVFLLDFRPWELENASLGPHLEFRATDGVSVNYNGALVDDSQRR 86
Query: 59 IAF--------------------ISERSGSPRI-----YQTRPGSSKTEL---------- 83
+ F +SER G+ + YQ + + L
Sbjct: 87 VIFEALDFRGEQQGDASQGILIYVSERDGAAEVRFNLFYQGQRDRGERSLGNIESGSQES 146
Query: 84 ----------------------------LPSIPCSLFHDRPVARNNKLFFISAHEQPDQI 115
+ + +DRP + ++ F+S ++ +Q
Sbjct: 147 HGNRRDALEIHGDRGNSQNFIDLGKLWSSSEVEPTALYDRPSVADGRVIFVSTRKRREQS 206
Query: 116 FKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDI 175
+SW+A+YS D+ K TRLTP GV DYSPSVS SGKF+ VAS + R W GE EL+TD+
Sbjct: 207 RQSWAAVYSMDIVTKKITRLTPEGVTDYSPSVSPSGKFVMVASDDGRGWGGEIEELDTDL 266
Query: 176 VVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAP 235
FQ D + R +V + GGWP+WS DST++FHR+A+DGWWS+++ +F ++ I
Sbjct: 267 YSFQAWDGSGRKLVVKNGGWPSWSDDSTVFFHRRAEDGWWSVYKATFSKSFT----AIRE 322
Query: 236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL----------TLNPNFHHY 285
R+TPPGVH FTPAA GK +AVATRR +RH+E++DL + P HHY
Sbjct: 323 ERITPPGVHAFTPAASRTGKWIAVATRRAGSLYRHVEVFDLGSRKFHKVSELVAPEAHHY 382
Query: 286 NPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIV 345
NPFVS S+ IGYHR R G+ P LE + SPV + ++R++G FP FSPDG I
Sbjct: 383 NPFVSPESDKIGYHRCR-----GKGVTPRLEHIKSPVPGISLVRVDGDFPVFSPDGESIA 437
Query: 346 FNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQI 405
F D + GI + + +GS T + D+ AF SW K V+YTS GP F E V I
Sbjct: 438 FIPDLD-EGGIYVTRLNGSG-LTKVFDKPAFGLSWDKQRKGVLYTSYGPGFVPEDTIVHI 495
Query: 406 ARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVL 465
+ D E+ KILTK T NNAFPS SPDGK++VFRSGRSGHKNL+++
Sbjct: 496 VSI-LNADELIAGGGGEVKW--KILTKSGTKNNAFPSPSPDGKWIVFRSGRSGHKNLYIM 552
Query: 466 DAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL 525
DA++GE +R+LT+G W DTM SWS G+ IAFSS+RHNP +F LY ++PDGS L
Sbjct: 553 DAIHGE-EASLRRLTEGAWTDTMASWSHDGEWIAFSSDRHNPGG-GSFQLYFVRPDGSQL 610
Query: 526 RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVV 585
R+ + G R+NH FS D L+FT + V A+P++ P QFQPYG++++
Sbjct: 611 HRVLNSSTGG-------RVNHPFFSPDSRSLVFTTDYAGVSADPIAVPAQFQPYGEIFMA 663
Query: 586 KLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEPLWI 638
++DGS L RLT N YE+GTP+W P +LD L E G K R F + W+
Sbjct: 664 RIDGSELVRLTHNAYEDGTPSWGP-VKLDSSALTGE---GKKARCGFRDTRWL 712
>gi|302824273|ref|XP_002993781.1| hypothetical protein SELMODRAFT_187603 [Selaginella moellendorffii]
gi|300138377|gb|EFJ05147.1| hypothetical protein SELMODRAFT_187603 [Selaginella moellendorffii]
Length = 722
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 286/713 (40%), Positives = 392/713 (54%), Gaps = 105/713 (14%)
Query: 4 KGTIVFTTVGRPYYGFDVFSIK-SPF----VNAPKFHEHRLTDGTSINFNAQFVD----- 53
+GT+ F +VGR +Y FDVF + P+ + E R TDG S+N+N VD
Sbjct: 27 EGTVAFASVGRAHYAFDVFLLDFRPWELENASLGPHLEFRATDGVSVNYNGALVDDSQRR 86
Query: 54 ---------------GQDQTIAFISERSGSPRI-----YQTRPGSSKTEL---------- 83
G + ++SER G+ + YQ + + L
Sbjct: 87 VIFEALDFRGEQQGDGSQGILIYVSERDGAAEVRFNLFYQGQRDRGERSLGNIESGSQES 146
Query: 84 ----------------------------LPSIPCSLFHDRPVARNNKLFFISAHEQPDQI 115
+ + +DRP + ++ F+S + +Q
Sbjct: 147 HGNRRDALEIHGDRGNSQNFIDLGKLWSSSEVEPTALYDRPSVADGRVIFVSTRKPREQS 206
Query: 116 FKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDI 175
+SW+A+YS D+ K TRLTP GV DYSPSVS SGKF+ VAS + R W GE EL+TD+
Sbjct: 207 RQSWAAVYSMDIVTKKITRLTPEGVTDYSPSVSPSGKFVMVASDDGRGWGGEIEELDTDL 266
Query: 176 VVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAP 235
FQ D + R +V + GGWP+WS DST++FHR+A+DGWWS+++ +F ++ I
Sbjct: 267 YSFQAWDGSGRKLVVKNGGWPSWSDDSTVFFHRRAEDGWWSVYKATFSKSFT----AIRE 322
Query: 236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL----------TLNPNFHHY 285
R+TPPGVH FTPAA GK +AVATRR +RH+E++DL + P HHY
Sbjct: 323 ERITPPGVHAFTPAASRTGKWIAVATRRAGSLYRHVEVFDLGSRKFHKLSELVAPEAHHY 382
Query: 286 NPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIV 345
NPFVS S+ IGYHR R G+ P LE + SPV + ++R++G FP FSPDG I
Sbjct: 383 NPFVSPESDKIGYHRCR-----GKGVTPRLEHIKSPVPGISLVRVDGDFPVFSPDGESIA 437
Query: 346 FNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQI 405
F D + GI + + +GS T + D+ AF SW K V+YTS GP F E V I
Sbjct: 438 FIPDLD-EGGIYVTRLNGSGM-TKVFDKPAFGLSWDKQRKGVLYTSYGPGFVPEDTIVHI 495
Query: 406 ARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVL 465
+ L+ + KILTK T NNAFPS SPDGK++VFRSGRSGHKNL+++
Sbjct: 496 VSI---LNADELIAGGGGAVKWKILTKSGTKNNAFPSPSPDGKWIVFRSGRSGHKNLYIM 552
Query: 466 DAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL 525
DA++GE +R+LT+G W DTM SWS G+ IAFSS+RHNP +F LY ++PDGS L
Sbjct: 553 DAIHGE-EASLRRLTEGAWTDTMASWSHDGEWIAFSSDRHNPGG-GSFQLYFVRPDGSQL 610
Query: 526 RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVV 585
R+ + G R+NH FS D L+FT + V A+P++ P QFQPYG++++
Sbjct: 611 HRVLNSSTGG-------RVNHPFFSPDSRSLVFTTDYAGVSADPIAVPAQFQPYGEIFMA 663
Query: 586 KLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEPLWI 638
++DGS L RLT N YE+GTP+W P +LD L E G K R F + W+
Sbjct: 664 RIDGSELVRLTHNAYEDGTPSWGP-VKLDSSALTGE---GKKARCGFRDTRWL 712
>gi|148907920|gb|ABR17080.1| unknown [Picea sitchensis]
Length = 714
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 276/697 (39%), Positives = 400/697 (57%), Gaps = 94/697 (13%)
Query: 4 KGTIVFTTVGRPYYGFDVFSIK-SPFVNAPKFHEHRLTDGTSINFNAQFVDG-------- 54
+GT+ F +VGR +Y FD++++ P + E +TDG S+N N Q++ G
Sbjct: 37 QGTLAFASVGRAHYAFDIYTLPLQPLRFSTNLEETLVTDGESVNHNGQYLQGPGIQTLMH 96
Query: 55 ----------QDQTIAFISERSGSPRIY-------------QTRPGSSKTELL------- 84
+ +AF+SER G P +Y + +S+ E L
Sbjct: 97 RLNINTTSTPVENVMAFVSERDGFPELYLNIYLKDNLPLLAEKAEENSRREALEDGKRCL 156
Query: 85 -------------PSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASK 131
+P DRP N + ++S Q KSW+A+YST +K +
Sbjct: 157 TINFGGVFEEKGKKDMPDLSMKDRPSMAGNSMVYVSTRGQTKASRKSWAAVYSTSIKTGR 216
Query: 132 FTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCE 191
RLTP G+ D SP+VS SG+++ AS R W GE +L TD+ VF+ SD + R +V +
Sbjct: 217 TRRLTPDGIADLSPAVSPSGEWVMAASAGERGWQGEIRDLETDLYVFRASDGSGRRLVVK 276
Query: 192 RGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAF 251
GGWP+W+ D+T++FHRQA+DGWWS++R S + + R+TPPG+ FTPAA
Sbjct: 277 HGGWPSWADDNTVFFHRQAEDGWWSVYRASVNSSSALV------ERITPPGIDAFTPAAS 330
Query: 252 HDGKRLAVATRRKNRNFRHIEIYDL----------TLNPNFHHYNPFVSANSEFIGYHRF 301
G +AVATRR ++RHIEI+DL ++PN HHYNPFVS S+ IGYHR
Sbjct: 331 RTGPWIAVATRRPGHDYRHIEIFDLLKKKFIQVTRLVSPNSHHYNPFVS--SDRIGYHRC 388
Query: 302 RGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKS 361
RG + +P LE + SP+ L + R++GSFPSFSPDG LI + + E +G+ + +
Sbjct: 389 RGGHVGNR--VPVLEQIRSPLPSLSLFRIDGSFPSFSPDGSLIAYIPNIEY-SGVYVMRL 445
Query: 362 DGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNRE 421
DGS R + AF +W ++ V+YTS GP F++E TV I + +D
Sbjct: 446 DGSGRRKIFSG-AAFGTAWD-WKRGVVYTSAGPGFETETTTVDIVAIY----NADREGTS 499
Query: 422 EIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD 481
E K LTKE GNNAFPS SPDGKF+VFRSGR+GHKNL+++DA GE G + QLT+
Sbjct: 500 ESEISYKTLTKE--GNNAFPSPSPDGKFVVFRSGRTGHKNLYIMDAEEGE-EGGLWQLTE 556
Query: 482 GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDR 541
GPW DTM +WSP G+ IAF+S+R +P + F++Y I P+G+GL R+ + G
Sbjct: 557 GPWTDTMCNWSPDGEWIAFASDRDSPGS-GGFAMYFIHPNGTGLHRVLNSSTAG------ 609
Query: 542 ERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYE 601
R+NH FS D + L+FT++ V AEP+S P+QFQPYG++++ ++DGS L+RLT N YE
Sbjct: 610 -RVNHPWFSPDSKSLVFTSDYAGVSAEPISVPHQFQPYGEIFMARVDGSELQRLTHNAYE 668
Query: 602 NGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEPLWI 638
+GTP+W ++ + L + G+ ++ FD+ W+
Sbjct: 669 DGTPSW---GRIFIAASDLTGE-GESVKCDFDDDHWL 701
>gi|357520365|ref|XP_003630471.1| Protein tolB [Medicago truncatula]
gi|355524493|gb|AET04947.1| Protein tolB [Medicago truncatula]
Length = 684
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 278/642 (43%), Positives = 379/642 (59%), Gaps = 71/642 (11%)
Query: 6 TIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFV------------D 53
+I+FTT+GRP Y FD++S+ P + E +LTDG S+NFN QF+ D
Sbjct: 33 SIIFTTLGRPDYAFDIYSL--PIHHHYHHQELQLTDGHSVNFNGQFLPNLTSIKLLTHQD 90
Query: 54 GQDQTIAFISERSGSPRIYQTRPGSSKTEL-----LPSIPCSL--------FHDRPVARN 100
+ +++ER+G P IY ++ T++ LP +P L D+P +
Sbjct: 91 PPPLQLVYVTERTGFPTIYYDAVYTTTTKINDRIQLPLLPNHLTQTQSQLSIKDKPSLSS 150
Query: 101 NK--LFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVAS 158
+ L ++S HE P SW+A+YST LK+ RLTPYGV D+SP+VS +GK+ AVAS
Sbjct: 151 DGQYLIYVSTHEDPGVQRVSWTAVYSTHLKSGNTRRLTPYGVADFSPAVSPTGKWTAVAS 210
Query: 159 YESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIF 218
Y W GE +L TDI VF D R V + GGWP+W D TIYFHR+ +DGW SI+
Sbjct: 211 YGGNGWSGEVEDLTTDIYVFLTHDGTHRYKVVDHGGWPSWVDDRTIYFHRRGNDGWLSIY 270
Query: 219 RVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAF-HDGKRLAVATRRKNRNFRHIEIYDLT 277
R + + + RVTPPG+H FTPA + K +AVATRR NFRHIE++DL
Sbjct: 271 RAILTTDSS---YSVLIERVTPPGLHVFTPATSPGNNKFIAVATRRPGSNFRHIELFDLV 327
Query: 278 LN----------PNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRM 327
N PN HH NPF+S +S +GYH+ RG+ + LE V SPV L +
Sbjct: 328 NNEFKELTRFVSPNTHHLNPFISPDSARVGYHKCRGKESNTSPQF-MLENVRSPVPNLTL 386
Query: 328 LRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHV 387
R GSFP FSP G I + E+ G+ + DGS R + D AF +W V
Sbjct: 387 FRFTGSFPVFSPSGDRIAY---VEM-PGVYVVNRDGSNR-KKVSDAMAFSTAWDRVRPGV 441
Query: 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
IYT+ G F SE V I + D N +++ D K NNAFPS SPDG
Sbjct: 442 IYTAVGETFASESTEVDIISIDV-----DRNFVKKLTLDGK--------NNAFPSPSPDG 488
Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP 507
K++VFRSGRSGHKNL+++DAV+GE NG +++LT+GPW DTM +WSP G+ IAF+S+RH+P
Sbjct: 489 KWIVFRSGRSGHKNLYIMDAVHGEKNG-LKRLTEGPWSDTMCNWSPDGEWIAFASDRHDP 547
Query: 508 DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA 567
+ +F +Y+I PDG+GLR++ +G G R NH FS DG+ ++FT++ + A
Sbjct: 548 GS-GSFEIYLIHPDGTGLRKLIHSGSGG-------RTNHPYFSPDGKSMVFTSDYAGISA 599
Query: 568 EPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
EP+S P+ +QPYG+++ V+LDGSGL RLT N YE+GTPAW P
Sbjct: 600 EPISNPHHYQPYGEIFTVRLDGSGLTRLTHNSYEDGTPAWSP 641
>gi|168057343|ref|XP_001780675.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667943|gb|EDQ54561.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 710
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 278/674 (41%), Positives = 387/674 (57%), Gaps = 62/674 (9%)
Query: 5 GTIVFTTVGRPYYGFDVFSI--------KSPFVNAPKFHEHRLTDGTSINFNAQFVDGQD 56
GTI F+T+GR + FDV+++ + F E R+T G S+N+NAQ ++G
Sbjct: 28 GTIGFSTLGRLSFAFDVYTVVFSQMGVLRGGGGGVGDFQETRVTLGESVNYNAQLLEGSG 87
Query: 57 ----QTIAFISERSGSPRIYQTRP-------------GSSKTELLP---SIPCSLF-HDR 95
+ + ++SE GSP++Y P S + ELL + P F +DR
Sbjct: 88 SDVPELLLYVSEVEGSPQLYLDVPLTGRFAIDRLPTRSSRRIELLADRLNAPSKAFLNDR 147
Query: 96 PVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIA 155
P + F+S E + + W+A+YS + S RLTP G+ DYSP+VS SG+++A
Sbjct: 148 PSMIGDVFIFVSTEEDVGKPVQGWNAVYSLNFITSVVKRLTPPGITDYSPAVSPSGEWVA 207
Query: 156 VASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWW 215
V S E R W E LN D+ +F+ D ++R ++ GGWPTW D+T+YFHR ADDGWW
Sbjct: 208 VGSNEGRGWQREIEALNLDLYIFKAEDGSQRRMIVRNGGWPTWMDDNTVYFHRIADDGWW 267
Query: 216 SIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD 275
SIF+V+ + RVTP GVH FTPAA GK +AVATRR +FRHIEI++
Sbjct: 268 SIFKVNVSDTSA-----DQAERVTPSGVHAFTPAASRSGKWIAVATRRA--SFRHIEIFE 320
Query: 276 L----------TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKEL 325
L +NPN HHYNPFVS +S IGYHR RG + Q+ P +E SP+ +
Sbjct: 321 LESKKFFPLTALINPNTHHYNPFVSPSSNKIGYHRCRGLDQDAQTVDPQIEYQKSPLPGV 380
Query: 326 RMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEK 385
+ R+ GSFPS SPDG L+ F ++ + + K DGS+ +I F W P K
Sbjct: 381 SLARIKGSFPSISPDGSLVSFVDSGNDSSTLAVMKLDGSEN-RVIHRSNVFGERWDPKGK 439
Query: 386 HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP 445
IY S G +F S + V+I V+ Q + D +E + K LTKE TGNNAFP SP
Sbjct: 440 -TIYASQGRVFASVKTVVRI--VAIQDSDTADLGADETSHNYKYLTKEGTGNNAFPCPSP 496
Query: 446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH 505
DGK++VFRSGR+G KNL+++DA GE +R+LT+G W DTMP+WSP + IAFSSNR
Sbjct: 497 DGKYVVFRSGRTGRKNLYIMDAAGGE-EKYLRRLTEGRWRDTMPAWSPDNEWIAFSSNRA 555
Query: 506 NPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV 565
+P +FSLY+I+P+G+ L + G G H FS D + + FT+N V
Sbjct: 556 HPTGERSFSLYLIRPNGTDLHMLLDTGVGGLA-------MHAVFSPDSKRIAFTSNWAGV 608
Query: 566 MAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIG 625
AEP+S+P+ +QPYG ++V+ +DG+GL RLT N YE+GTP W +L L K + D G
Sbjct: 609 SAEPISFPHAYQPYGTIFVINIDGTGLTRLTHNAYEDGTPTW---GRLPLPKPAISSD-G 664
Query: 626 DKLRGQFDEPLWIS 639
+ FD+ ++S
Sbjct: 665 RRSSCDFDDVSFLS 678
>gi|359492398|ref|XP_002285876.2| PREDICTED: uncharacterized protein LOC100267814 isoform 1 [Vitis
vinifera]
Length = 715
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 287/653 (43%), Positives = 370/653 (56%), Gaps = 88/653 (13%)
Query: 12 VGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFV------------------- 52
+GR Y FDVFS+ + + E R+TDG S+NFN F
Sbjct: 47 LGRSDYAFDVFSLPT-LGPSTIADELRITDGQSVNFNGHFPSSPIISLLANQTLVESSSV 105
Query: 53 ---DGQDQTIAFISERSGSPRIY-----------QTRPGSSKTELLPSIPC--------- 89
D QTI +++ER+GS IY R + +T + +P
Sbjct: 106 KRPDESLQTI-YVTERNGSSNIYLDIIYYDTPTNSRRRSALETAVRVEVPLLGTNTEQSD 164
Query: 90 --SLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSV 147
DRP L ++S HE KSW+A+YST L RLTPYGV DYSP+V
Sbjct: 165 GRISMKDRPSLVGEDLVYVSTHEDSGVPRKSWAAVYSTHLPTGSTRRLTPYGVADYSPAV 224
Query: 148 SYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFH 207
S SG + AVASY R W GE EL+TDI VF+ D ++R V E GGWP W DST++FH
Sbjct: 225 SPSGVWTAVASYGERGWGGEVEELSTDIYVFRTRDGSERTKVVEHGGWPCWVDDSTLFFH 284
Query: 208 RQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKR-LAVATRRKNR 266
R+ DGWWSI+R E+ + RVTPPG+H FTPA K +AVATRR N
Sbjct: 285 RRGSDGWWSIYRAILTES-------VVIERVTPPGLHAFTPATSPGNKNFIAVATRRLNS 337
Query: 267 NFRHIEIYDLTLN----------PNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLE 316
++RHIE++DL N P HH+NPF+S +S IGYHR RG+S G+S LE
Sbjct: 338 DYRHIELFDLLSNEFRELTRRISPQTHHFNPFISPDSTRIGYHRCRGDSNGGKSPHLLLE 397
Query: 317 PVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAF 376
+ SP+ E+ + R +GSFPSFSP G I + E G+ + DGS R + AF
Sbjct: 398 NLKSPLPEISLFRFDGSFPSFSPGGDRIAY---VEF-PGVYVVNRDGSGRREVFSG-IAF 452
Query: 377 YNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETG 436
+W K V+YTS GP F +E V I VS +D D P K+ T E
Sbjct: 453 STAWDHKRKGVVYTSAGPTFATESTKVDI--VSINVDDVDQ------PSYKKLTTGGE-- 502
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
NNAFPS SPDGK++ FRSGRSG+KNL+++DAV+GE G I +LT+GPW DTM +WSP GD
Sbjct: 503 NNAFPSPSPDGKWIAFRSGRSGYKNLYIMDAVDGE-RGGIHRLTEGPWTDTMCNWSPDGD 561
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
I F+S+R NP F LYVI P+G+GLR++ +G G R NH FS DG+ +
Sbjct: 562 WIVFASDRENPGG-GGFELYVIHPNGTGLRKVVHSGSAG-------RTNHPWFSPDGKSI 613
Query: 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+FT++ AV AEP+S + +QPYGD++VV LDGSGL RLT N YE+GTPAW P
Sbjct: 614 VFTSDYAAVSAEPISNAHHYQPYGDIFVVNLDGSGLHRLTHNSYEDGTPAWAP 666
>gi|147797552|emb|CAN73514.1| hypothetical protein VITISV_037210 [Vitis vinifera]
Length = 715
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 287/653 (43%), Positives = 369/653 (56%), Gaps = 88/653 (13%)
Query: 12 VGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFV------------------- 52
+GR Y FDVFS+ + + E R+TDG S+NFN F
Sbjct: 47 LGRSDYAFDVFSLPT-LGPSTIADELRITDGQSVNFNGHFPSSPIISLLANQTLLESSSV 105
Query: 53 ---DGQDQTIAFISERSGSPRIY-----------QTRPGSSKTELLPSIPC--------- 89
D QTI +++ER+GS IY R + +T + +P
Sbjct: 106 KRPDESLQTI-YVTERNGSSNIYLDIIYYDTPTNSRRRSALETAVRVEVPLLGTNTEQSD 164
Query: 90 --SLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSV 147
DRP L ++S HE KSW+A+YST L RLTPYGV DYSP+V
Sbjct: 165 GRISMKDRPSLVGEXLVYVSTHEDSGVPRKSWAAVYSTHLPTGSTRRLTPYGVADYSPAV 224
Query: 148 SYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFH 207
S SG + AVASY R W GE EL+TDI VF+ D ++R V E GGWP W DST++FH
Sbjct: 225 SPSGVWTAVASYGERGWGGEVEELSTDIYVFRTRDGSERTKVVEHGGWPCWVDDSTLFFH 284
Query: 208 RQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKR-LAVATRRKNR 266
R+ DGWWSI+R E+ + RVTPPG+H FTPA K +AVATRR N
Sbjct: 285 RRGSDGWWSIYRAILTES-------VVIERVTPPGLHAFTPATSPGNKNFIAVATRRLNS 337
Query: 267 NFRHIEIYDLTLN----------PNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLE 316
++RHIE++DL N P HH+NPF+S +S IGYHR RG+S G+S LE
Sbjct: 338 DYRHIELFDLLSNEFRELTRRISPQTHHFNPFISPDSTRIGYHRCRGDSNGGKSPHLLLE 397
Query: 317 PVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAF 376
+ SP+ E+ + R +GSFPSFSP G I + E G+ + DGS R + AF
Sbjct: 398 NLKSPLPEISLFRFDGSFPSFSPGGDRIAY---VEF-PGVYVVNRDGSGRREVFSG-IAF 452
Query: 377 YNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETG 436
+W K V+YTS GP F +E V I VS +D D P K+ T E
Sbjct: 453 STAWDHKRKGVVYTSAGPTFATESTKVDI--VSINVDDVDQ------PSYKKLTTGGE-- 502
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
NNAFPS SPDGK++ FRSGRSG+KNL+++DAV GE G I +LT+GPW DTM +WSP GD
Sbjct: 503 NNAFPSPSPDGKWIAFRSGRSGYKNLYIMDAVXGE-RGGIHRLTEGPWTDTMCNWSPDGD 561
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
I F+S+R NP F LYVI P+G+GLR++ +G G R NH FS DG+ +
Sbjct: 562 WIVFASDRENPGG-GGFELYVIHPNGTGLRKVVHSGSAG-------RTNHPWFSPDGKSI 613
Query: 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+FT++ AV AEP+S + +QPYGD++VV LDGSGL RLT N YE+GTPAW P
Sbjct: 614 VFTSDYAAVSAEPISNAHHYQPYGDIFVVNLDGSGLHRLTHNSYEDGTPAWAP 666
>gi|356518561|ref|XP_003527947.1| PREDICTED: uncharacterized protein LOC100791865 [Glycine max]
Length = 723
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 272/641 (42%), Positives = 366/641 (57%), Gaps = 62/641 (9%)
Query: 5 GTIVFTTVGRPYYGFDVFSIKSPFVNAPKFH-----EHRLTDGTSINFNAQFVDGQDQT- 58
+I+FTT+GR Y FD++S+ P + E LTDG S+NFN F+
Sbjct: 65 ASIIFTTLGRASYAFDIYSLPVPVQQQQQQPLSPSQELLLTDGHSVNFNGHFLSNSSAIQ 124
Query: 59 ---------IAFISERSGSPRI-YQTRPGSSKTELLPSIPCSLFH-------DRPVAR-- 99
+ +++ER+G P I Y SS IP H D+P
Sbjct: 125 LPKHSPPLQLVYVTERNGYPTIFYDAIYSSSMVSNRIQIPLLSNHLSDASIKDKPSVTPD 184
Query: 100 NNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASY 159
L ++S+HE P SW+A+YST L++ RLTPYGV D+SPS+S SG + AVASY
Sbjct: 185 GQYLLYVSSHENPGVPRASWTAVYSTQLESGLTQRLTPYGVADFSPSLSPSGLWTAVASY 244
Query: 160 ESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFR 219
W GE +L TDI VF D R + E GGWPTW D T+YFHR+ D WWSI+R
Sbjct: 245 GPHGWAGEVEDLTTDIYVFLTHDGTHRFKIVEHGGWPTWVDDRTLYFHRRGQDHWWSIYR 304
Query: 220 VSFPENLEFLGFPIAPTRVTPPGVHCFTPAAF-HDGKRLAVATRRKNRNFRHIEIYDLTL 278
P N F + RVTPPG+H FTPA + +AVATRR NFRHIE++DL
Sbjct: 305 AILPSNAPFSVDSVFVERVTPPGLHAFTPATSPGNNNFIAVATRRPGSNFRHIELFDLAS 364
Query: 279 N----------PNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRML 328
N PN HH NPF+S +S +GYH+ RGE + LE V SPV L +
Sbjct: 365 NEFTELTRLVSPNSHHLNPFISPDSTRVGYHKCRGEPNAHSTPQFFLENVRSPVPGLTLF 424
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVI 388
R GSFP FSP G I + E+ G+ + DGS + + AF +W VI
Sbjct: 425 RFVGSFPVFSPSGDRIAY---VEM-PGVYVVNRDGSN-LRKVSNAMAFSTAWDRVRPGVI 479
Query: 389 YTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGK 448
YT+ G F E + V I + D +N+ + + D K NNAFPS SPDGK
Sbjct: 480 YTAIGETFAPESSQVDIVSI----DVDHENSVKRLTLDGK--------NNAFPSPSPDGK 527
Query: 449 FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD 508
++VFRSGRSGHKNL+++DAV+GE ++R+LT+GPW DTM +WSP G+ IAF+S+RH+P
Sbjct: 528 WIVFRSGRSGHKNLYIMDAVDGE-KKELRRLTEGPWTDTMCNWSPDGEWIAFASDRHDPG 586
Query: 509 NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAE 568
+ +F +Y+I P+G+GLR++ +G G R NH FS DG+ L FT++ + AE
Sbjct: 587 S-GSFEIYLIHPNGTGLRKLIQSGSGG-------RTNHPYFSPDGKSLTFTSDYAGISAE 638
Query: 569 PVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
P+S P+ +QPYG+++ V+LDGSG++RLT N YE+GTPAW P
Sbjct: 639 PISNPHHYQPYGEIFTVRLDGSGIKRLTHNSYEDGTPAWSP 679
>gi|449463434|ref|XP_004149439.1| PREDICTED: protein TolB-like [Cucumis sativus]
Length = 703
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 273/657 (41%), Positives = 377/657 (57%), Gaps = 80/657 (12%)
Query: 6 TIVFTTVGRPYYGFDVFSIKSPFVNAPKF-HEHRLTDGTSINFNAQFVDGQ--------- 55
+IVFTT+GR +Y FD++++ + P E +TDG +NFN F
Sbjct: 28 SIVFTTLGRSFYAFDIYTLPADANKNPSLPDEILITDGQYVNFNGYFPSSTSSSSLISLL 87
Query: 56 ---------DQTIAFISERSGSPRIYQTR-------PGSSKTELLPSIPCSL-------- 91
D + +++ER+G I+ ++EL IP L
Sbjct: 88 TNQSHSFTPDFELVYVTERNGISTIFYDAVFGGIGVSARRRSEL--EIPHRLQIPLLDEE 145
Query: 92 --------FHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDY 143
F DRP + L ++S HE P + SW+A+YS +LK+ RLTPYG+ D+
Sbjct: 146 QKNEARVSFKDRPSLSGDYLVYVSTHEDPRESRTSWAAVYSRNLKSGLTRRLTPYGIADF 205
Query: 144 SPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDST 203
SPSVS SG + AVASY + W G+ EL+TD+ +F D ++RV V E GGWP W+ DST
Sbjct: 206 SPSVSPSGIWTAVASYGEKGWAGDVEELSTDLYIFLTRDGSRRVKVVEHGGWPCWADDST 265
Query: 204 IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRL-AVATR 262
+YFHR+ DD W SI+R P + E + R+TPPG+H FTPA K L AVATR
Sbjct: 266 LYFHRRGDDQWLSIYRAILPSHGEISLDSVIIERLTPPGLHVFTPATSSANKNLIAVATR 325
Query: 263 RKNRNFRHIEIYDL----------TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTI 312
R + +FRHIE++++ T++PN HH+NPFVSA+ IGYH+ RG+ +S +
Sbjct: 326 RPDSSFRHIELFNIVTGEFKELTKTVSPNSHHFNPFVSADGTRIGYHKCRGDGNRRKSNL 385
Query: 313 PHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD 372
E V SPV L + R+ SFPSFSP G I + + G+ + + DGS + +
Sbjct: 386 LLFETVRSPVSNLSLFRIAVSFPSFSPAGDRIAYAN----FPGLYVIERDGSNQREVFSG 441
Query: 373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK 432
AF +W P K V+YTS GP F A VS Q+D N EE K+ T
Sbjct: 442 -AAFSTAWDPVRKGVVYTSAGPDF---------APVSSQVDIISVNVDEEERNIKKLTTN 491
Query: 433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
E NNAFPS SPDGK++VFRSG++G+KNL+++DAV GE G +R+LT+G W DTM SWS
Sbjct: 492 GE--NNAFPSPSPDGKWIVFRSGQTGYKNLYIMDAVEGESKG-LRRLTEGQWTDTMCSWS 548
Query: 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD 552
P+GD IAFSS+R NP +F L++I P+G+GLR++ +G G R NH + D
Sbjct: 549 PEGDWIAFSSDRENPGG-GSFDLFLIHPNGTGLRKLFQSGLGG-------RANHPNWRPD 600
Query: 553 GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G+ L+FT + + EPVS P+ +QPYG++Y +KLDGS L+RLT N YE+GTP W P
Sbjct: 601 GKALVFTTDNAGISGEPVSNPHHYQPYGEIYTIKLDGSDLQRLTHNSYEDGTPTWSP 657
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 85/217 (39%), Gaps = 42/217 (19%)
Query: 322 VKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKI-----AKSDGSKRWTLIKDRTAF 376
+K+L N +FPS SPDG IVF + I +S G +R T T
Sbjct: 485 IKKLTTNGENNAFPSPSPDGKWIVFRSGQTGYKNLYIMDAVEGESKGLRRLTE-GQWTDT 543
Query: 377 YNSWSPTEKHVIYTSTGPIFQSERATVQIARVS-FQLDPSDDNNREEIPCDVKILTKEET 435
SWSP + F S+R F + P+ R K+
Sbjct: 544 MCSWSPEGDWIA-------FSSDRENPGGGSFDLFLIHPNGTGLR-------KLFQSGLG 589
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN----GEF------NGDIRQLTDGPWI 485
G P+ PDGK LVF + +G V + + GE D+++LT +
Sbjct: 590 GRANHPNWRPDGKALVFTTDNAGISGEPVSNPHHYQPYGEIYTIKLDGSDLQRLTHNSYE 649
Query: 486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG 522
D P+WSP+ NP NVE SLY ++P G
Sbjct: 650 DGTPTWSPR---------YINPVNVE--SLYDVEPCG 675
>gi|449499097|ref|XP_004160721.1| PREDICTED: protein TolB-like [Cucumis sativus]
Length = 703
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 273/657 (41%), Positives = 376/657 (57%), Gaps = 80/657 (12%)
Query: 6 TIVFTTVGRPYYGFDVFSIKSPFVNAPKF-HEHRLTDGTSINFNAQFVDGQ--------- 55
+IVFTT+GR +Y FD++++ + P E +TDG +NFN F
Sbjct: 28 SIVFTTLGRSFYAFDIYTLPADANKNPSLPDEILITDGQYVNFNGYFPSSTSSSSLISLL 87
Query: 56 ---------DQTIAFISERSGSPRIYQTR-------PGSSKTELLPSIPCSL-------- 91
D + +++ER+G I+ ++EL IP L
Sbjct: 88 TNQSHSFTPDFELVYVTERNGISTIFYDAVFGGIGVSARRRSEL--EIPHRLQIPLLDEE 145
Query: 92 --------FHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDY 143
F DRP + L ++S HE P + SW+A+YS +LK+ RLTPYG+ D+
Sbjct: 146 QKNEAKVSFKDRPSLSGDYLVYVSTHEDPRESRTSWAAVYSRNLKSGLTRRLTPYGIADF 205
Query: 144 SPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDST 203
SPSVS SG + AVASY + W G+ EL+TD+ +F D ++RV V E GGWP W+ DST
Sbjct: 206 SPSVSPSGIWTAVASYGEKGWAGDVEELSTDLYIFLTRDGSRRVKVVEHGGWPCWADDST 265
Query: 204 IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRL-AVATR 262
+YFHR+ DD W SI+R P + E + R+TPPG+H FTPA K L AVATR
Sbjct: 266 LYFHRRGDDQWLSIYRAILPSHGEISLDSVIIERLTPPGLHVFTPATSSANKNLIAVATR 325
Query: 263 RKNRNFRHIEIYDL----------TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTI 312
R + +FRHIE++++ T++PN HH+NPFVSA+ IGYH+ RG+ +S +
Sbjct: 326 RPDSSFRHIELFNIVTGEFKELTKTVSPNSHHFNPFVSADGTRIGYHKCRGDGNRRKSNL 385
Query: 313 PHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD 372
E V SPV L + R+ SFPSFSP G I + + G+ + + DGS + +
Sbjct: 386 LLFENVRSPVSNLSLFRIAVSFPSFSPAGDRIAYAN----FPGLYVIERDGSNQREVFSG 441
Query: 373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK 432
AF +W P K V+YTS GP F A VS Q+D N EE K+ T
Sbjct: 442 -AAFSTAWDPVRKGVVYTSAGPDF---------APVSSQVDIISVNVDEEERNIKKLTTN 491
Query: 433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
E NNAFPS SPDGK++VFRSG++G+KNL+++DAV GE G +R+LT+G W DTM SWS
Sbjct: 492 GE--NNAFPSPSPDGKWIVFRSGQTGYKNLYIMDAVEGESKG-LRRLTEGQWTDTMCSWS 548
Query: 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD 552
P+GD IAFSS+R NP F L++I P+G+GLR++ +G G R NH + D
Sbjct: 549 PEGDWIAFSSDRENPGGGN-FDLFLIHPNGTGLRKLFQSGLGG-------RANHPNWRPD 600
Query: 553 GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G+ L+FT + + EPVS P+ +QPYG++Y +KLDGS L+RLT N YE+GTP W P
Sbjct: 601 GKALVFTTDNAGISGEPVSNPHHYQPYGEIYTIKLDGSDLQRLTHNSYEDGTPTWSP 657
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 85/217 (39%), Gaps = 42/217 (19%)
Query: 322 VKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKI-----AKSDGSKRWTLIKDRTAF 376
+K+L N +FPS SPDG IVF + I +S G +R T T
Sbjct: 485 IKKLTTNGENNAFPSPSPDGKWIVFRSGQTGYKNLYIMDAVEGESKGLRRLTE-GQWTDT 543
Query: 377 YNSWSPTEKHVIYTSTGPIFQSERATVQIARVS-FQLDPSDDNNREEIPCDVKILTKEET 435
SWSP + F S+R F + P+ R K+
Sbjct: 544 MCSWSPEGDWIA-------FSSDRENPGGGNFDLFLIHPNGTGLR-------KLFQSGLG 589
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN----GEF------NGDIRQLTDGPWI 485
G P+ PDGK LVF + +G V + + GE D+++LT +
Sbjct: 590 GRANHPNWRPDGKALVFTTDNAGISGEPVSNPHHYQPYGEIYTIKLDGSDLQRLTHNSYE 649
Query: 486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG 522
D P+WSP+ NP NVE SLY ++P G
Sbjct: 650 DGTPTWSPR---------YINPVNVE--SLYDVEPCG 675
>gi|326522999|dbj|BAJ88545.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 706
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 282/684 (41%), Positives = 389/684 (56%), Gaps = 76/684 (11%)
Query: 5 GTIVFTTVGRPYYGFDVFSIK-SPFVNAPK--FHEHRLTDGTSINFNAQFVDGQDQTIAF 61
GTIVFTT+GR Y FDV+++ +P ++ P E RLTDG S+N+N F D + F
Sbjct: 31 GTIVFTTLGRSRYAFDVYALPLAPSLSIPASPAAELRLTDGASVNYNGNFAPSSDALL-F 89
Query: 62 ISERSGSPRIY---------------QTRPGSSKTELLPSI-----PCSLFHDRPVARNN 101
+SER+GS IY Q G S P P +L DRP +
Sbjct: 90 VSERNGSLNIYLSPAPPSSSSRREALQLEDGDSSPAAPPMPLLPWDPVAL-RDRPALTRD 148
Query: 102 --KLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASY 159
+L ++S +SW+A+Y+T L + + TRLTP GV D+SP+VS SG + A AS
Sbjct: 149 GSRLVYVSTAVPAAAPRRSWAAVYATHLPSGRATRLTPPGVADFSPAVSPSGDWAAAASP 208
Query: 160 ESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFR 219
W GE +L TD+ VF+ +D ++R ++ + GGWP W+ D+T++FHR+ DGW+ ++R
Sbjct: 209 GEHGWAGEVQDLRTDVYVFRTTDGSRRTLLVKNGGWPCWADDATLFFHRRDSDGWYGVYR 268
Query: 220 VSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRL-AVATRRKNRNFRHIEIYDLT- 277
+ + L + R+TPPG H FTPAA L AVATRR +RHIE+ DL+
Sbjct: 269 AKIEVSDDGLLSAASVERITPPGFHAFTPAASPGAPGLVAVATRRPGSEYRHIEVIDLSA 328
Query: 278 ---------------LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPV 322
+ P HH+NPFVS + +GYHR RG + G S + LE + SP
Sbjct: 329 GGGIENAAYFEMTRPVAPRAHHFNPFVSPDGARVGYHRCRG-TGNGDSPL-LLESLKSPA 386
Query: 323 KELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSP 382
E + R++GS+PSFSPDG I F G+ + SDGS I AF SW
Sbjct: 387 SE-SLFRIDGSYPSFSPDGRRIAFVG----LPGLYVVNSDGSGGRRKIFSGNAFPTSWDW 441
Query: 383 TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPS 442
K VIYTS GP F SE V + VS D DD + ++ + E NNAFPS
Sbjct: 442 KRKGVIYTSIGPDFASESTEVDVVAVSLGDDNDDDGSIYQVSIKKLTVGGE---NNAFPS 498
Query: 443 CSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
SPDGK+LVFRSGRSGHKNL+++DA GE G IR+LTDGPW DTM +WSP G+ IAF+S
Sbjct: 499 PSPDGKWLVFRSGRSGHKNLYIMDAEEGEAGG-IRRLTDGPWTDTMCNWSPDGEWIAFAS 557
Query: 503 NRHNPDNVEAFSLYVIKPDGSGLRR-IHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN 561
+RHNP +F++Y++ P+ +GLRR +H A D R NH FS D + ++FT++
Sbjct: 558 DRHNPGG-GSFAIYMVHPNSTGLRRVVHSA--------DGGRTNHPWFSPDSKRMVFTSD 608
Query: 562 LGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLE 621
L AV AEP+S P+ +QPYG+++ + +DGSGL+RLT N +E+GTP+W P
Sbjct: 609 LAAVSAEPISNPHHYQPYGEIFTINIDGSGLQRLTHNSFEDGTPSWTP-------HFLEP 661
Query: 622 DDIGDKLRGQ----FDEPLWISCD 641
D+G+ LR F + W+S +
Sbjct: 662 RDVGETLRASGSCAFQDCHWLSIE 685
>gi|255558602|ref|XP_002520326.1| conserved hypothetical protein [Ricinus communis]
gi|223540545|gb|EEF42112.1| conserved hypothetical protein [Ricinus communis]
Length = 708
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 270/661 (40%), Positives = 380/661 (57%), Gaps = 82/661 (12%)
Query: 4 KGTIVFTTVG-RPYYGFDVFSIKSPFVNAP-KFHEHRLTDGTSINFNAQF---------- 51
+ +I+F T+G R FD+F++ P P +E ++TDG S++FN F
Sbjct: 30 RTSIIFATLGSRSSNAFDIFAL--PTTTPPDSSNEIQITDGKSLSFNGHFPSPTSLVSLF 87
Query: 52 -----------VDGQDQTIAFISERSGSPRIY-------QTRPGSSKTELL--PSIPCSL 91
+ T+ +++ER GS IY R S++ L P + L
Sbjct: 88 PNQTLIHSSAHQNSASITVIYVTERGGSSTIYLDVLSYDTARSARSRSALETPPRVQIPL 147
Query: 92 ---------FHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVD 142
F D+P N L ++S HE + SW+A+YST+L RLTPYGV D
Sbjct: 148 LKGNNVGVSFKDKPTINGNYLVYLSTHEDAGKPRASWAAVYSTELNTGLTRRLTPYGVAD 207
Query: 143 YSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDS 202
+SP+VS SG + AVASY W GE L+TDI +F + +RV + E GGWP+W DS
Sbjct: 208 FSPAVSPSGVYTAVASYGEAGWKGEVELLSTDIYIFLTRNGTRRVKIIENGGWPSWVDDS 267
Query: 203 TIYFHRQAD-DGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKR-LAVA 260
T+YFHR ++ DGW S++R + P + + RVTPPGVH FTPA K+ +AVA
Sbjct: 268 TLYFHRSSEKDGWISVYRATLPSHTSLSTDSVIIERVTPPGVHAFTPATSPGNKKFIAVA 327
Query: 261 TRRKNRNFRHIEIYDLTLN----------PNFHHYNPFVSANSEFIGYHRFRGESTEGQS 310
TRR N ++RHIE++DL N P HHYNPF+S ++ +GYHR RG S + +S
Sbjct: 328 TRRPNSDYRHIELFDLAKNEFVELTRLVSPQTHHYNPFISPDAARVGYHRCRGASNDKKS 387
Query: 311 TIP-HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTL 369
+ LE + SPV E+ + R++GSFPS+SP G I F E G+ + DG+ R
Sbjct: 388 STQFMLENIKSPVAEISLFRIDGSFPSWSPGGDRIAF---VEF-PGVYVVNRDGTDR-RQ 442
Query: 370 IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI 429
+ AF +W P V+Y+S GP F SE V I + N +++ K+
Sbjct: 443 VYPGNAFGTTWDPVRPGVVYSSAGPEFASESTEVDIISI----------NVDQVGSFKKL 492
Query: 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489
T + NNAFP+ SPDGK++VFRSGRSG+KNL+++DAV GE G + +LT+GPW DTM
Sbjct: 493 TTNGK--NNAFPAVSPDGKWIVFRSGRSGYKNLYIMDAVEGE-KGGLYRLTEGPWGDTMC 549
Query: 490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCF 549
SWS G+ IAF+S+R NP + +F L++I P+G+GL+R+ +G G R NH F
Sbjct: 550 SWSIDGEWIAFASDRENPGSA-SFELFLIHPNGTGLKRLVKSGLGG-------RTNHPYF 601
Query: 550 SADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
S DG+ ++FT + G + AEP+S P+ FQPYG++Y VKLDGS L+RLT N +E+GTPAW P
Sbjct: 602 SPDGKSIVFTTDYGGISAEPISNPHHFQPYGEIYTVKLDGSDLKRLTHNSFEDGTPAWGP 661
Query: 610 G 610
Sbjct: 662 A 662
>gi|18395019|ref|NP_564147.1| DPP6 N-terminal domain-like protein [Arabidopsis thaliana]
gi|5263319|gb|AAD41421.1|AC007727_10 ESTs gb|N96028, gb|F14286, gb|T20680, gb|F14443, gb|AA657300 and
gb|N65244 come from this gene [Arabidopsis thaliana]
gi|15028243|gb|AAK76710.1| unknown protein [Arabidopsis thaliana]
gi|23297034|gb|AAN13226.1| unknown protein [Arabidopsis thaliana]
gi|332192017|gb|AEE30138.1| DPP6 N-terminal domain-like protein [Arabidopsis thaliana]
Length = 706
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 266/662 (40%), Positives = 384/662 (58%), Gaps = 85/662 (12%)
Query: 6 TIVFTTVGRPYYGFDVFSIKS---PFVNAPKFHEHRLTDGTSINFNA------------- 49
TI+FTT+GR +Y FD+F++ + P V+ E R+TDG S+NFN
Sbjct: 33 TIIFTTLGRSHYEFDIFALSTTQPPSVSG----ELRITDGESVNFNGYFPSPSPALLSLL 88
Query: 50 ------QFVDGQDQTIAFISERSGSPRIY-----------QTR-------------PGSS 79
Q D + +++ER+G+ +Y +T+ P S
Sbjct: 89 PDETLIQMEDSSPLHLIYVTERNGTSSLYYDLVYGGNSDFKTKRRSVLEAPSRVQVPLLS 148
Query: 80 KTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYG 139
+ + L + + F D+P + ++S HE + SW+A+YST+LK RLTP G
Sbjct: 149 RFDHLSGMTVNSFKDKPSLSGEFIVYVSTHESSGEPRASWTAVYSTELKTGLTRRLTPSG 208
Query: 140 VVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWS 199
V D+SP+VS SG AVASY R W GE EL TDI VF D + RV V E GGWP W
Sbjct: 209 VADFSPAVSPSGNLTAVASYGERGWTGEVEELRTDIYVFLTRDGSHRVKVVEHGGWPCWV 268
Query: 200 GDSTIYFHRQA-DDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAF-HDGKRL 257
+ST+YFHR++ +DGW S++R PEN + RVTPPGVH FTPA ++ + +
Sbjct: 269 DESTLYFHRRSEEDGWISVYRAILPENGPLTTESVTIQRVTPPGVHAFTPATSPNNHEFV 328
Query: 258 AVATRRKNRNFRHIEIYDLTLN----------PNFHHYNPFVSANSEFIGYHRFRGESTE 307
AVATRR ++RH+E++DL N P HH NPF+S +S +GYH RG++
Sbjct: 329 AVATRRPGSDYRHVELFDLKRNEFIELTRLVAPKSHHLNPFLSPDSSRVGYHSCRGDANG 388
Query: 308 GQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW 367
+S + LE + + ++L + R++GSFPSFSP G I + G+ + K DGS +
Sbjct: 389 RRSPLLFLENIQTTTRDLSLFRIDGSFPSFSPGGDRIAYVK----MPGVFVVKPDGSGQR 444
Query: 368 TLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDV 427
+ K AF +W P ++Y+S+GP F +ER V + +S +D +D ++ V
Sbjct: 445 EVYKG-MAFSTAWDPVRPGIVYSSSGPTFATERTEVDV--ISIDVDAADKSS------SV 495
Query: 428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT 487
+ LT NNAFP SPDGK +VFRSGR+GHKNL+++DA GE +G + +LT+G W DT
Sbjct: 496 RRLTTNGK-NNAFPWPSPDGKRIVFRSGRTGHKNLYIMDAEKGE-SGGLWRLTEGAWTDT 553
Query: 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV 547
M +WSP G+ IAF+S+R +P + +F L++I P+G+GLR++ +G G R NH
Sbjct: 554 MCNWSPDGEWIAFASDRESPGS-GSFELFLIHPNGTGLRKLIQSGTGG-------RTNHP 605
Query: 548 CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
FS D + L+FT++ + AEP+S P+ +QPYGD++ VKLDGS +RRLT N YE+GTPAW
Sbjct: 606 IFSPDSKSLVFTSDYAGISAEPISNPHHYQPYGDIFTVKLDGSNVRRLTHNSYEDGTPAW 665
Query: 608 HP 609
P
Sbjct: 666 AP 667
>gi|297845142|ref|XP_002890452.1| hypothetical protein ARALYDRAFT_472406 [Arabidopsis lyrata subsp.
lyrata]
gi|297336294|gb|EFH66711.1| hypothetical protein ARALYDRAFT_472406 [Arabidopsis lyrata subsp.
lyrata]
Length = 706
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 265/659 (40%), Positives = 378/659 (57%), Gaps = 79/659 (11%)
Query: 6 TIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNA---------------- 49
TI+FTT+GR Y FD+F++ + + +E R+TDG S+NFN
Sbjct: 33 TIIFTTLGRSRYEFDIFTLSTTHPPSDS-NELRITDGESVNFNGYFPSPTPALISLLPDE 91
Query: 50 ---QFVDGQDQTIAFISERSGSPRIYQ------------------TRPGSSKTELLPS-- 86
Q D + +++ER+G+ IY P + LL
Sbjct: 92 TLIQMEDSSPLHLIYVTERNGTSSIYYDLIYGGDSDSKMKRRSVLEAPSRVQVPLLSGFD 151
Query: 87 ----IPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVD 142
+ + F D+P L ++S HE + SW+A+YST+LK RLTP GV D
Sbjct: 152 HQSGMTVNSFKDKPSLSGEFLVYVSTHENSGEPRTSWTAVYSTELKTGLTRRLTPSGVAD 211
Query: 143 YSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDS 202
+SP+VS SG AVASY R W GE EL+TDI VF D RV V E GGWP W ++
Sbjct: 212 FSPAVSPSGNLTAVASYGERGWTGEVEELSTDIYVFSTRDGTHRVKVVEHGGWPCWVDET 271
Query: 203 TIYFHRQA-DDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAF-HDGKRLAVA 260
T+YFHR++ +DGW S++R PEN + RVTPPGVH FTPA ++ + +AVA
Sbjct: 272 TLYFHRRSEEDGWISVYRAILPENGPLTTESVTIQRVTPPGVHAFTPATSPNNHEFIAVA 331
Query: 261 TRRKNRNFRHIEIYDLTLN----------PNFHHYNPFVSANSEFIGYHRFRGESTEGQS 310
TRR ++RH+E++DL N P +H NPF+S +S +GYH RGE+ +S
Sbjct: 332 TRRPGSDYRHVELFDLKRNEFIELTRLVAPKSYHLNPFLSPDSSRVGYHSCRGEANGRRS 391
Query: 311 TIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI 370
+ LE + + +L + R++GSFPSFSP G I + G+ + K DGS + +
Sbjct: 392 PLLFLENIQTTTTDLSLFRIDGSFPSFSPGGDRIAYVK----MPGVFVVKPDGSGQRE-V 446
Query: 371 KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL 430
+ AF +W P V+Y+S+GP F +ER V + +S ++D +D ++ V+ L
Sbjct: 447 YNGMAFSTAWDPVRPGVVYSSSGPTFATERTEVDV--ISIEVDAADKSS------SVRRL 498
Query: 431 TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS 490
T NNAFP SPDGK +VFRSGR+GHKNL+++DA GE +G + +LT+G W DTM +
Sbjct: 499 TTNGK-NNAFPWPSPDGKRIVFRSGRTGHKNLYIMDAEKGE-SGGLWRLTEGAWTDTMCN 556
Query: 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS 550
WSP G+ IAF+S+R +P + +F L++I P+G+GLR++ +G G R NH FS
Sbjct: 557 WSPDGEWIAFASDRESPGS-GSFELFLIHPNGTGLRKLIQSGTGG-------RTNHPIFS 608
Query: 551 ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
D + L+FT++ + AEP+S P+ +QPYGD++ VKLDGS LRRLT N YE+GTPAW P
Sbjct: 609 PDSKSLVFTSDYAGISAEPISNPHHYQPYGDIFTVKLDGSNLRRLTHNSYEDGTPAWAP 667
>gi|413932479|gb|AFW67030.1| putative WD40-like beta propeller repeat family protein [Zea mays]
Length = 689
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 287/689 (41%), Positives = 394/689 (57%), Gaps = 85/689 (12%)
Query: 1 MEPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQ--T 58
+ GTIVFTT+GR Y FDVF++ ++A E RLTDG S+N+N F +
Sbjct: 22 LATSGTIVFTTLGRSRYAFDVFALTIAPLSAAS-AELRLTDGASVNYNGNFAPSSSGPPS 80
Query: 59 IAFISERSGSPRIYQTRPGSSK------------------TELLPSIPCSLFHDRP--VA 98
+ F+SER+GS +Y T +S T LLP P +L DRP
Sbjct: 81 LLFVSERNGSLNLYLTPVPTSASARRRDALEEEEEDSAPPTPLLPWDPIAL-KDRPSLTP 139
Query: 99 RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTR-LTPYGVVDYSPSVSYSGKFIAVA 157
L ++S E +SW+A+YST L + TR LTP GV D+SP+VS SG + A A
Sbjct: 140 DGAHLVYVSTAEPAGAPRRSWAAVYSTSLAPGRATRRLTPRGVADFSPAVSPSGVWTAAA 199
Query: 158 SYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSI 217
S R W GE +L TDI VF+ SD ++R + GGWPTW+ D+T++FHR+ DGW+ +
Sbjct: 200 SPGPRGWAGEVEDLRTDIYVFRTSDGSRRALAVPDGGWPTWADDTTVFFHRRDADGWYGV 259
Query: 218 FRVSFPENLEFLGFPIAPT--RVTPPGVHCFTPAAFHDGKRL-AVATRRKNRNFRHIEIY 274
+R L F +A R+TPPG H FTPAA L AVATRR ++RHIE+
Sbjct: 260 YRA----RLTFTDDDVASVVDRITPPGFHAFTPAASPGAPGLVAVATRRPGSDYRHIEVI 315
Query: 275 DLT------------------LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLE 316
DL+ + P HH+NPF+S + E +GYHR RG S G S + LE
Sbjct: 316 DLSGGGGGANNRSAYYEVTRPVAPRAHHFNPFISPDGERVGYHRCRG-SGNGDSPL-LLE 373
Query: 317 PVASPVKE-LRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTA 375
+ P + + R++GSFPSFS DG I F G+ + SDGS + A
Sbjct: 374 SIKGPAPDTFSLFRIDGSFPSFSHDGKRIAFVG----LPGLYVVNSDGSGGRRRVFSGNA 429
Query: 376 FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEET 435
F +W K VIYTS GP F SE V + VS D + ++ +K LT
Sbjct: 430 FPTTWDWKRKGVIYTSVGPDFASESTEVDVVAVSLG-----DGDGDDPSVSIKKLTVGGE 484
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
NNAFPS SPDGK++VFRSGRSGHKNL+++DA +GE G IR+LT+GPW DTM +WSP G
Sbjct: 485 -NNAFPSPSPDGKWVVFRSGRSGHKNLYIMDAEDGEAGG-IRRLTEGPWSDTMCNWSPDG 542
Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR-IHVAGPEGSGDVDRERINHVCFSADGE 554
+ IAF+S+RHNP +F++Y++ P+G+GLRR +H A D R NH FS D +
Sbjct: 543 EWIAFASDRHNPGG-GSFAIYMVHPNGTGLRRVVHSA--------DGGRTNHPWFSPDSK 593
Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLD 614
L+FT++ AV AEP+S P+ +QPYG+++ V +DGSG+RRLT N +E+GTP+W P +
Sbjct: 594 TLVFTSDYAAVSAEPISNPHHYQPYGEIFTVNIDGSGIRRLTHNSFEDGTPSWTPYH--- 650
Query: 615 LGKLRLEDDIGDKLRGQ----FDEPLWIS 639
L+ E D+G+ L+ F++ W++
Sbjct: 651 ---LKAE-DVGETLQASGTCAFEDCHWLN 675
>gi|242037461|ref|XP_002466125.1| hypothetical protein SORBIDRAFT_01g001880 [Sorghum bicolor]
gi|241919979|gb|EER93123.1| hypothetical protein SORBIDRAFT_01g001880 [Sorghum bicolor]
Length = 690
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 278/652 (42%), Positives = 383/652 (58%), Gaps = 71/652 (10%)
Query: 4 KGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFH-EHRLTDGTSINFNAQFVDGQDQT---- 58
GTIVFTT+GR Y FD+F++ +++ E RLTDG S+N+N F +
Sbjct: 23 SGTIVFTTLGRSRYAFDIFALPLSPLSSAAASAELRLTDGVSVNYNGNFAPSSSSSEPPS 82
Query: 59 IAFISERSGSPRIYQT-RPGSSK-----------------TELLPSIPCSLFHDRP--VA 98
+ F+SER+GS +Y+T P S+ T LLP P +L DRP
Sbjct: 83 LLFVSERNGSLNLYRTPVPLSASAARRREALEEEDDSPTLTPLLPWDPIAL-KDRPSLTP 141
Query: 99 RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVAS 158
L ++S E +SW+A+YST L + RLTP GV D+SP+VS SG + A AS
Sbjct: 142 DGAHLVYVSTAEPAGSPRRSWAAVYSTSLASGATRRLTPRGVADFSPAVSPSGDWTAAAS 201
Query: 159 YESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIF 218
R W GE +L TDI VF+ SD ++R + GWPTW+ DST++FHR+ DGW+ ++
Sbjct: 202 PGPRGWDGEVEDLRTDIYVFRTSDGSRRTLAVPDAGWPTWADDSTVFFHRRDGDGWYGVY 261
Query: 219 R--VSFPENLEFLGFPIAPT--RVTPPGVHCFTPAAFHDGKRL-AVATRRKNRNFRHIEI 273
R +SF ++ + G +A R+TPPG+H FTPAA L AVATRR ++RHIE+
Sbjct: 262 RAKLSFTDDDDG-GVAVASVVDRITPPGIHAFTPAASPGAPGLVAVATRRPGSDYRHIEV 320
Query: 274 YDLT---------------LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPV 318
D++ + P HH+NPF+S + E +GYHR RG S G S + LE +
Sbjct: 321 IDVSGGGGANAAYFDVTRAVAPRAHHFNPFISPDGERVGYHRCRG-SGNGDSPL-LLESI 378
Query: 319 ASPVKE-LRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFY 377
SP + + R++GSFPSFS DG I F G+ + SDGS + AF
Sbjct: 379 KSPAPDTFSLFRIDGSFPSFSHDGKRIAFVG----LPGLFVVNSDGSGGRRRVFSGNAFP 434
Query: 378 NSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGN 437
+W K VIYTS GP F SE V + VS DD+ + I K+ E N
Sbjct: 435 TTWDWKRKGVIYTSVGPDFASESTEVDVVAVSLG---DDDDPKVSIK---KLTVGGE--N 486
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497
NAFPS SPDGK++VFRSGRSGHKNL+++DA +GE +G IR+LT+GPW DTM +WSP G+
Sbjct: 487 NAFPSPSPDGKWVVFRSGRSGHKNLYIMDAEDGEASG-IRRLTEGPWSDTMCNWSPDGEW 545
Query: 498 IAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL 557
IAF+S+RHNP +F +Y++ P+G+GLRR+ + D R NH FS D + L+
Sbjct: 546 IAFASDRHNPGG-GSFGIYMVHPNGTGLRRVVHS-------TDGGRTNHPWFSPDSKTLV 597
Query: 558 FTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
FT++ AV AEP+S P+ +QPYG+++ V +DGSG+RRLT N +E+GTP+W P
Sbjct: 598 FTSDYAAVSAEPISNPHHYQPYGEIFTVNIDGSGIRRLTHNSFEDGTPSWTP 649
>gi|115456491|ref|NP_001051846.1| Os03g0840200 [Oryza sativa Japonica Group]
gi|50428662|gb|AAT77013.1| putative F8K7.10 protein [Oryza sativa Japonica Group]
gi|108712007|gb|ABF99802.1| WD40-like Beta Propeller Repeat family protein, expressed [Oryza
sativa Japonica Group]
gi|113550317|dbj|BAF13760.1| Os03g0840200 [Oryza sativa Japonica Group]
gi|215695413|dbj|BAG90604.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215713452|dbj|BAG94589.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 688
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 273/646 (42%), Positives = 379/646 (58%), Gaps = 69/646 (10%)
Query: 5 GTIVFTTVGRPYYGFDVFSIKSPFVNAP----KFHEHRLTDGTSINFNAQFVDGQDQTIA 60
GTIVFTT+GR Y FD+FS+ P +P E RLTDG S+N+N F D +I
Sbjct: 28 GTIVFTTLGRSRYEFDIFSL--PLAPSPHNPAAAAELRLTDGVSVNYNGNFAPASD-SIL 84
Query: 61 FISERSGSPRIYQTRPGSSKTE------------------LLPSIPCSLFHDRP--VARN 100
F+SER+GS +Y + SS+ E LLP P +L DRP
Sbjct: 85 FVSERNGSLNLYLSPVPSSRREALESASSSSSSAAATISPLLPWEPIAL-KDRPSLTPDG 143
Query: 101 NKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYE 160
++L ++S + SW+A+YST+L + RLTP GV D+SP+VS SG++ A AS
Sbjct: 144 SRLVYVSTAVPAAEPRSSWAAVYSTELSTGRTRRLTPLGVADFSPAVSPSGEWTAAASPG 203
Query: 161 SRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRV 220
+ W GE +L TDI VF+ +D ++R + GGWP+W+ ++T++FHR+ DGW+ ++R
Sbjct: 204 AAGWSGEVEDLRTDIYVFRTADGSRRSLAIRDGGWPSWADETTVFFHRRDSDGWYGVYRA 263
Query: 221 SFPENLEFLGFPIAPT-RVTPPGVHCFTPAAFHDGKRL-AVATRRKNRNFRHIEIYDLT- 277
++ G A R+TPPG H FTPAA L AVATRR ++RHIE+ D++
Sbjct: 264 EI--SVTGDGVEAASVERITPPGFHAFTPAASPGAPGLVAVATRRAGSDYRHIEVIDVSS 321
Query: 278 ------------LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVK-- 323
+ P HH+NPF+S + +GYHR RG G S + LE + SP
Sbjct: 322 DGKNAYFEVTRPVAPRVHHFNPFISPDGARVGYHRCRGRG-NGDSPL-LLENIKSPGSPD 379
Query: 324 ELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPT 383
+ R++GSFPSFS DG I F G+ + SDGS I AF SW
Sbjct: 380 TFSLFRIDGSFPSFSHDGKKIAFVG----LPGMYVVNSDGSGGRRKIFSGNAFSTSWDWK 435
Query: 384 EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSC 443
K V+YTS GP F SE V + +S DD++ I + E NNAFPS
Sbjct: 436 RKGVVYTSIGPDFASETTEVDVVAISL----GDDDDESTISMKKLTVGGE---NNAFPSP 488
Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503
SPDGK++VFRSGRSG+KNL+++DA +GE G IR+LT+GPW DTM +WSP G+ IAF+S+
Sbjct: 489 SPDGKWVVFRSGRSGNKNLYIIDAEDGEAGG-IRRLTEGPWSDTMCNWSPDGEWIAFASD 547
Query: 504 RHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563
RH P + +F++Y++ P+G+GLRR+ +G GSG R NH FS D + L+FT++
Sbjct: 548 RHAPGS-GSFAIYMVHPNGTGLRRVVHSG--GSG-----RTNHPWFSPDSKSLVFTSDYA 599
Query: 564 AVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
AV AEPVS P+ +QPYG+++ V +DGS +RRLT N +E+GTP+W P
Sbjct: 600 AVSAEPVSNPHHYQPYGEIFTVDIDGSNIRRLTHNSFEDGTPSWTP 645
>gi|125588578|gb|EAZ29242.1| hypothetical protein OsJ_13305 [Oryza sativa Japonica Group]
Length = 688
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 272/645 (42%), Positives = 378/645 (58%), Gaps = 69/645 (10%)
Query: 6 TIVFTTVGRPYYGFDVFSIKSPFVNAP----KFHEHRLTDGTSINFNAQFVDGQDQTIAF 61
TIVFTT+GR Y FD+FS+ P +P E RLTDG S+N+N F D +I F
Sbjct: 29 TIVFTTLGRSRYEFDIFSL--PLAPSPHNPAAAAELRLTDGVSVNYNGNFAPASD-SILF 85
Query: 62 ISERSGSPRIYQTRPGSSKTE------------------LLPSIPCSLFHDRP--VARNN 101
+SER+GS +Y + SS+ E LLP P +L DRP +
Sbjct: 86 VSERNGSLNLYLSPVPSSRREALESASSSSSSAAATISPLLPWEPIAL-KDRPSLTPDGS 144
Query: 102 KLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYES 161
+L ++S + SW+A+YST+L + RLTP GV D+SP+VS SG++ A AS +
Sbjct: 145 RLVYVSTAVPAAEPRSSWAAVYSTELSTGRTRRLTPLGVADFSPAVSPSGEWTAAASPGA 204
Query: 162 RPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVS 221
W GE +L TDI VF+ +D ++R + GGWP+W+ ++T++FHR+ DGW+ ++R
Sbjct: 205 AGWSGEVEDLRTDIYVFRTADGSRRSLAIRDGGWPSWADETTVFFHRRDSDGWYGVYRAE 264
Query: 222 FPENLEFLGFPIAPT-RVTPPGVHCFTPAAFHDGKRL-AVATRRKNRNFRHIEIYDLT-- 277
++ G A R+TPPG H FTPAA L AVATRR ++RHIE+ D++
Sbjct: 265 I--SVTGDGVEAASVERITPPGFHAFTPAASPGAPGLVAVATRRAGSDYRHIEVIDVSSD 322
Query: 278 -----------LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVK--E 324
+ P HH+NPF+S + +GYHR RG G S + LE + SP
Sbjct: 323 GKNAYFEVTRPVAPRVHHFNPFISPDGARVGYHRCRGRG-NGDSPL-LLENIKSPGSPDT 380
Query: 325 LRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTE 384
+ R++GSFPSFS DG I F G+ + SDGS I AF SW
Sbjct: 381 FSLFRIDGSFPSFSHDGKKIAFVG----LPGMYVVNSDGSGGRRKIFSGNAFSTSWDWKR 436
Query: 385 KHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCS 444
K V+YTS GP F SE V + +S DD++ I + E NNAFPS S
Sbjct: 437 KGVVYTSIGPDFASETTEVDVVAISL----GDDDDESTISMKKLTVGGE---NNAFPSPS 489
Query: 445 PDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
PDGK++VFRSGRSG+KNL+++DA +GE G IR+LT+GPW DTM +WSP G+ IAF+S+R
Sbjct: 490 PDGKWVVFRSGRSGNKNLYIIDAEDGEAGG-IRRLTEGPWSDTMCNWSPDGEWIAFASDR 548
Query: 505 HNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA 564
H P + +F++Y++ P+G+GLRR+ +G GSG R NH FS D + L+FT++ A
Sbjct: 549 HAPGS-GSFAIYMVHPNGTGLRRVVHSG--GSG-----RTNHPWFSPDSKSLVFTSDYAA 600
Query: 565 VMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
V AEPVS P+ +QPYG+++ V +DGS +RRLT N +E+GTP+W P
Sbjct: 601 VSAEPVSNPHHYQPYGEIFTVDIDGSNIRRLTHNSFEDGTPSWTP 645
>gi|125546375|gb|EAY92514.1| hypothetical protein OsI_14253 [Oryza sativa Indica Group]
Length = 682
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 275/673 (40%), Positives = 387/673 (57%), Gaps = 72/673 (10%)
Query: 5 GTIVFTTVGRPYYGFDVFSIK-SPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFIS 63
GTIVFTT+GR Y FD+FS+ +P + P E RLTDG S+N+N F D +I F+S
Sbjct: 28 GTIVFTTLGRSRYEFDIFSLPLAPSPHNPAAEELRLTDGVSVNYNGNFAPASD-SILFVS 86
Query: 64 ERSGSPRIYQTRPGSSK--------------TELLPSIPCSLFHDRP--VARNNKLFFIS 107
ER+GS +Y + SS+ + LLP P +L DRP ++L ++S
Sbjct: 87 ERNGSLNLYLSPVPSSRREALESASSSAATLSPLLPWEPIAL-KDRPSLTPDGSRLVYVS 145
Query: 108 AHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGE 167
+ SW+A+YST+L + RLTP GV D+SP+VS SG++ A AS + W GE
Sbjct: 146 TAVPAAEPRSSWAAVYSTELSTGRTRRLTPLGVADFSPAVSPSGEWTAAASPGAAGWSGE 205
Query: 168 FHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLE 227
+L TDI VF+ +D ++R + GGWP+W+ ++T++FHR+ DGW+ ++R ++
Sbjct: 206 VEDLRTDIYVFRTADGSRRSLAIRDGGWPSWADETTVFFHRRDSDGWYGVYRAEI--SVT 263
Query: 228 FLGFPIAPT-RVTPPGVHCFTPAAFHDGKRL-AVATRRKNRNFRHIEIYDLT-------- 277
G A R+TPPG H FTPAA L AVATRR ++RHIE+ D++
Sbjct: 264 GDGVEAASVERITPPGFHAFTPAASPGAPGLVAVATRRAGSDYRHIEVIDVSDDGKNAYF 323
Query: 278 -----LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVK--ELRMLRL 330
+ P HH+NPF+S + +GYHR RG G S + LE + SP + R+
Sbjct: 324 EVTRPVAPRVHHFNPFISPDGARVGYHRCRGRG-NGDSPL-LLENIKSPGSPDTFSLFRI 381
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYT 390
+GSFPSFS DG I F G+ + DGS I AF SW VIYT
Sbjct: 382 DGSFPSFSHDGKKIAFVG----LPGMYVVNPDGSGGRRKIFSGNAFSTSWDWKRNGVIYT 437
Query: 391 STGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFL 450
S GP F SE V + +S D++ E I + E NNAFPS SPDGK++
Sbjct: 438 SIGPDFASESTEVDVVAISLG-----DDDDETISMKKLTVGGE---NNAFPSPSPDGKWV 489
Query: 451 VFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV 510
VFRSGRSG+KNL+++DA +GE G IR+LT+GPW DTM +WSP G+ IAF+S+RH P +
Sbjct: 490 VFRSGRSGNKNLYIIDAEDGEAGG-IRRLTEGPWSDTMCNWSPDGEWIAFASDRHAPGS- 547
Query: 511 EAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV 570
+F++Y++ P+G+GLRR+ +G D R NH F D + L+FT++ AV AEPV
Sbjct: 548 GSFAIYMVHPNGTGLRRVVHSG-------DGGRTNHPWFGPDSKSLVFTSDYAAVSAEPV 600
Query: 571 SWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKL-- 628
S P+ +QPYG+++ V +DGS +RRLT N +E+GTP+W P L D+G+ L
Sbjct: 601 SNPHHYQPYGEIFTVHIDGSNIRRLTHNSFEDGTPSWTP-------YLLEPRDVGETLQA 653
Query: 629 --RGQFDEPLWIS 639
R F + W++
Sbjct: 654 SGRCAFQDCHWLN 666
>gi|357121960|ref|XP_003562684.1| PREDICTED: protein tolB-like [Brachypodium distachyon]
Length = 709
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 273/654 (41%), Positives = 374/654 (57%), Gaps = 82/654 (12%)
Query: 6 TIVFTTVGRPYYGFDVFSIK---------SPFVNAPKFHEHRLTDGTSINFNAQFVDG-Q 55
TIVFTT+GR Y FD+F++ SP + E RLTDG S+N+N F
Sbjct: 41 TIVFTTLGRSRYAFDIFAVPLNRGDHLALSP-SDKSAAAEVRLTDGASVNYNGNFAASPS 99
Query: 56 DQTIAFISERSGSPRIYQTRPGSSKTE------------------LLPSIPCSLFHDRP- 96
+ F+SER+GS +Y + SS T LLP P +L DRP
Sbjct: 100 SDALLFVSERNGSLNLYLSPIPSSPTSRREALEEKEEDSSAQISPLLPWDPVAL-KDRPS 158
Query: 97 -VARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIA 155
+L ++S +SW+A+YST+L + + RLTP GV D+SP+VS SG++ A
Sbjct: 159 LTPDGTRLVYVSTAVPAGSPRRSWAAVYSTELHSGRTRRLTPEGVADFSPAVSPSGEWTA 218
Query: 156 VASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWW 215
VAS W GE +L TDI VF+ SD ++R +V GGWP W+ + T++FHR+ DGW+
Sbjct: 219 VASPGEAGWAGEVEDLRTDIYVFRTSDGSRRTLVVPDGGWPCWADEVTLFFHRRDSDGWY 278
Query: 216 SIFRVSFPENLEFLGFPIAP---TRVTPPGVHCFTPAAFHDGKRL-AVATRRKNRNFRHI 271
++R E G A R+TPPG H FTPAA + AVATRR +RH+
Sbjct: 279 GVYRA------EIHGLSAAAGVVERITPPGFHAFTPAASPGAPGIVAVATRRPGSKYRHV 332
Query: 272 EIYDL--------------TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEP 317
E+ DL ++ P+ HH+NPF+S + +GYHR RG S G S + LE
Sbjct: 333 EVIDLSSGGENAAYFEVTRSMAPHVHHFNPFISPDGARLGYHRCRG-SGNGDSPL-LLES 390
Query: 318 VASPVKE-LRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAF 376
+ SP + + + R++GS+PSFS DG I F G+ + SDGS I AF
Sbjct: 391 LKSPGPDTVSLFRIDGSYPSFSHDGKRIAFVG----LPGLYVVNSDGSSVRRKIFSGNAF 446
Query: 377 YNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETG 436
SW + VIYTS GP F SE V + VS + E +K LT
Sbjct: 447 PTSWDWKREGVIYTSIGPDFASESTEVDVVAVSL-------GDGESSQVSIKKLTLGGK- 498
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
NNAFPS SPDGK++VFRSGRSGHKNL+++DA +GE G I +LT+GPW DTM +WSP G+
Sbjct: 499 NNAFPSPSPDGKWVVFRSGRSGHKNLYIMDAEDGEAGG-IHRLTNGPWSDTMCNWSPDGE 557
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR-IHVAGPEGSGDVDRERINHVCFSADGEW 555
IAF+S+RHNP +F++Y+I P+G+GLRR +H A D R NH FS D +
Sbjct: 558 WIAFASDRHNPGG-GSFAIYLIHPNGTGLRRLVHSA--------DGGRTNHPWFSPDSKS 608
Query: 556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
++FT++L AV AEP+S P+ +QPYG+++ + +DGSGL+RLT N +E+GTP+W P
Sbjct: 609 IVFTSDLAAVSAEPISNPHHYQPYGEIFTINIDGSGLQRLTHNSFEDGTPSWTP 662
>gi|18395017|ref|NP_564146.1| uncharacterized protein [Arabidopsis thaliana]
gi|5263318|gb|AAD41420.1|AC007727_9 F8K7.9 [Arabidopsis thaliana]
gi|14334812|gb|AAK59584.1| unknown protein [Arabidopsis thaliana]
gi|24030458|gb|AAN41381.1| unknown protein [Arabidopsis thaliana]
gi|332192016|gb|AEE30137.1| uncharacterized protein [Arabidopsis thaliana]
Length = 703
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 244/646 (37%), Positives = 349/646 (54%), Gaps = 66/646 (10%)
Query: 6 TIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQF-------------- 51
TI+FTT+GRP + FD+F++ + EHRLTDG SINFN F
Sbjct: 33 TILFTTIGRPTFEFDIFTLPTSHRPPSPADEHRLTDGKSINFNGYFASPSTALISLLPKR 92
Query: 52 --VDGQDQTIAFISERSGSPR-----IYQTRPGS-------SKTELLPSIPCSLFHDRPV 97
+ QD + +++ER+G+P ++ GS S E + + D PV
Sbjct: 93 TQIQPQDVHLIYVTERAGTPSLNYDVVHSDNVGSRIQVPLFSGEEQQSGMNVNSMKDTPV 152
Query: 98 ARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVA 157
N L +S HE P + SW+A+YST+L+ RLTP G+ D+SP+VS SGK+ AVA
Sbjct: 153 LTNGYLVHVSTHENPGKPMASWAAVYSTELRTKSTRRLTPLGIADFSPAVSPSGKWTAVA 212
Query: 158 SYESRPWPGEF--HELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWW 215
S+ + W E+++D+ VF D +RV V E+GGWP W DST+YFHR++DDGW
Sbjct: 213 SFGEKGWTWSMVEKEISSDVYVFLTQDGTQRVKVVEQGGWPRWVDDSTLYFHRKSDDGWI 272
Query: 216 SIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAF-HDGKRLAVATRRKNRNFRHIEIY 274
S++R P+ + RVTPPG+H FTPA ++ +AVATRR RH+E++
Sbjct: 273 SVYRAILPKTGPVTTKSVTIQRVTPPGLHAFTPATSPNNNNFIAVATRRPGSEIRHVELF 332
Query: 275 DLTLN----------PNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKE 324
DL N P HH+NPF+S +S +GYH RG++T ++ L+ + + +
Sbjct: 333 DLKKNEFVELTRLVSPKSHHFNPFLSPDSSRVGYHSCRGDATGRKTPRNLLQSLKTTSND 392
Query: 325 LRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTE 384
L + R +G+FPS SP+G F G+ + DGS L+ + F W P
Sbjct: 393 LSLFRFDGAFPSISPEGDRFAFVS----FTGVFVVNPDGSGLRQLLP-QMGFGTVWDPIR 447
Query: 385 KHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETG-NNAFPSC 443
++YTS+GP ++ + I ++ PS VK LT TG NNAFP
Sbjct: 448 HGIVYTSSGPALAPGKSQIDILAINVDA-PSPA-------TAVKKLT--TTGENNAFPWP 497
Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503
SPDGK +VFRS RSG KNL+++DA GE G R LT+G W DT+ +WSP G+ I F+SN
Sbjct: 498 SPDGKRIVFRSARSGTKNLYIMDAEKGESGGLFR-LTNGNWNDTIATWSPDGNWIVFASN 556
Query: 504 RHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563
R P + ++YV+ PDG+GLR++ +G V H FS D + ++FT
Sbjct: 557 REFPGTL-LMNIYVVHPDGTGLRKL---AQNLTGLVSM----HPMFSPDSKRIVFTTIYA 608
Query: 564 AVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ AE + P+ P +++ V LDGSGL RLT N E+G P W P
Sbjct: 609 GISAEQIGNPHFNVPSSEIFTVNLDGSGLTRLTHNSVEDGPPMWFP 654
>gi|297845140|ref|XP_002890451.1| hypothetical protein ARALYDRAFT_472405 [Arabidopsis lyrata subsp.
lyrata]
gi|297336293|gb|EFH66710.1| hypothetical protein ARALYDRAFT_472405 [Arabidopsis lyrata subsp.
lyrata]
Length = 703
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 242/647 (37%), Positives = 350/647 (54%), Gaps = 68/647 (10%)
Query: 6 TIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQF-------------- 51
TI+FTT+GRP + FD+F++ + EHRLTD S+NFN F
Sbjct: 33 TILFTTIGRPTFEFDIFTLPTSHRPPSPADEHRLTDAKSVNFNGHFASPSPALISLLPNK 92
Query: 52 --VDGQDQTIAFISERSGSPRIY-----QTRPGS-------SKTELLPSIPCSLFHDRPV 97
+ QD + +++ER G+P +Y + GS S E + + D PV
Sbjct: 93 SQIQPQDLHLIYVTERDGTPSLYYDVVHDDKSGSRVQVPLFSGEEQQSGMNVNSMKDTPV 152
Query: 98 ARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVA 157
++ L ++S HE P + SW+A+YST+L+ RLTP G+ D+SP+VS SGK+ AVA
Sbjct: 153 LTSDYLVYVSTHENPGKPMASWAAVYSTELQTKSTRRLTPPGIADFSPAVSPSGKWTAVA 212
Query: 158 SYESRPWPGEF--HELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWW 215
SY + W E+++DI VF D +RV V E+GGWP W DST+YFHR++DDGW
Sbjct: 213 SYGEKGWTWSLVEKEISSDIYVFLTRDGTQRVKVVEQGGWPRWVDDSTLYFHRKSDDGWI 272
Query: 216 SIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAF-HDGKRLAVATRRKNRNFRHIEIY 274
++R P+ + RVTPPG+H FTPA ++ +AVATRR RH+E++
Sbjct: 273 CVYRAIIPKTGAVTTKTVTIQRVTPPGLHAFTPATSPNNNNFIAVATRRPGSEIRHVELF 332
Query: 275 DLTLN----------PNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKE 324
DL N P H+NPF+S +S +GYH RG++T ++ L+ + + +
Sbjct: 333 DLKKNEFIELTRLVSPKSQHFNPFLSPDSSRVGYHSCRGDATGRKTPRNLLQSLKTTSND 392
Query: 325 LRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTE 384
L + R +G+FPS SP+G F G+ + K DGS L+ + F W P
Sbjct: 393 LSLFRFDGAFPSISPEGDRFAFVS----FTGVFVVKPDGSGLRQLLP-QMGFGTVWDPIR 447
Query: 385 KHVIYTSTGPIFQSERATVQIARVSFQL-DPSDDNNREEIPCDVKILTKEETG-NNAFPS 442
++YTS+GP ++ + I ++ +PS VK LT TG NNAFP
Sbjct: 448 HGIVYTSSGPALAPGKSQIDILAINVDAPNPS---------TAVKKLT--TTGENNAFPW 496
Query: 443 CSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
SPDGK +VFRS RSG KNL+++DA GE G R LT+G W DT+ +WSP G+ I F+S
Sbjct: 497 PSPDGKRIVFRSSRSGTKNLYIMDAEKGESGGLFR-LTNGNWNDTIATWSPDGNWIVFAS 555
Query: 503 NRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL 562
NR P + ++YV+ PDG+GLR++ +G V H FS D + ++FT
Sbjct: 556 NREFPGTL-LMNIYVVHPDGTGLRKL---AQNLTGGVSM----HPMFSPDSKRIVFTTIY 607
Query: 563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ AE + P+ P +++ V LDGSG+ RLT N E+G P W P
Sbjct: 608 AGISAEQIGNPHFNVPSSEIFTVNLDGSGMTRLTHNSVEDGPPMWFP 654
>gi|384248424|gb|EIE21908.1| tricorn protease N-terminal domain-containing protein [Coccomyxa
subellipsoidea C-169]
Length = 732
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 237/631 (37%), Positives = 345/631 (54%), Gaps = 65/631 (10%)
Query: 1 MEPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFH---EHRLTDGTSINFNAQFVDGQDQ 57
+ + T+V+ TVGR Y FD+++ P+ E +LTDG S+N+N F G +
Sbjct: 71 QQARTTVVYATVGRAQYAFDIYTKLMGNERDPELANAAETQLTDGVSVNYNGAFA-GDGE 129
Query: 58 TIAFISERSGSPRIYQTRPGSSKTELLPSIP----CSLFHDRPV-ARNNKLFFISAHEQP 112
+ F+SER G+ +Y+ PS+ DRP+ + + ++ F+S H+
Sbjct: 130 ALLFVSERDGNMELYKGHAEGVTGGHRPSLKRLTYSPTLQDRPIYSPDGRIIFVSTHQPA 189
Query: 113 DQIFKSWSALYS-TDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHEL 171
+ + W+A+YS + +K RLTP DYSP++S +++A A+ G
Sbjct: 190 KKPRQGWTAIYSVSGVKGHTVRRLTPENETDYSPAISADEQWLAAAT-------GSGKTG 242
Query: 172 NTDIVVFQESDPNKRVIVCERGGWPTWSGDS-TIYFHRQADDGWWSIFRVSFPENLEFLG 230
+D+VV + +D +R IV + GGWP +S D +I+FHRQ +GWWSIF N+E
Sbjct: 243 KSDVVVMRSADGLQRRIVAKNGGWPAFSRDGRSIFFHRQTPEGWWSIF------NVELES 296
Query: 231 FPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL----------TLNP 280
I TR+TPPGV FTPA +AVAT ++ +R I + + N
Sbjct: 297 GNI--TRITPPGVDVFTPATSKGKDWVAVATPDQD-GYRQIGVLRMDEGGEWALSQITNK 353
Query: 281 NFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPD 340
HHYNPF+SA+ E +GYHR R ++ IP LE +SP+ + ++R++G+FPSFS D
Sbjct: 354 TTHHYNPFLSADGERLGYHRCRCADSDTLEHIPVLERHSSPLPNVDLVRIDGAFPSFSDD 413
Query: 341 GGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTE-KHVIYTSTGPIFQSE 399
IV+N F G+ +A+ DGS + + K AF + S E +HV+ T+ GP F +E
Sbjct: 414 DSYIVYNEGF---TGVSVAERDGSNKKVIYKG-PAFGTTASYHEGRHVVATAQGPTFATE 469
Query: 400 RATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGH 459
+ V I L +D + + DV LT TGNNAFPS S DG +VFRSGRSG
Sbjct: 470 KDVVDI------LLLADGQSGDWHNTDVLTLTANGTGNNAFPSFSSDGSEIVFRSGRSGF 523
Query: 460 KNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDN---VEAFSLY 516
KNL+++ GE G IR LT+GPW DTMP W+P I F+S+R ++ AF ++
Sbjct: 524 KNLYIM-PTEGEAAGLIR-LTEGPWDDTMPGWTPASGWIVFASSREYVESNRPAGAFDIF 581
Query: 517 VIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQF 576
+I+ DGSGL+++ D NH FS ++FT AE +S P+QF
Sbjct: 582 MIRTDGSGLQKVF--------DSHGGLANHPHFSPSQTSVVFT----RYSAEEISTPHQF 629
Query: 577 QPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
QPYGDL+ + DG+ LRRLT + YENGTPAW
Sbjct: 630 QPYGDLFAIDTDGTNLRRLTHDPYENGTPAW 660
>gi|255558604|ref|XP_002520327.1| conserved hypothetical protein [Ricinus communis]
gi|223540546|gb|EEF42113.1| conserved hypothetical protein [Ricinus communis]
Length = 540
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 215/534 (40%), Positives = 297/534 (55%), Gaps = 64/534 (11%)
Query: 94 DRPVARNNKLFFI---SAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYS 150
D P+ + L + + P + SW+A+YST LK+ RLTPYGV D+SP+VS S
Sbjct: 2 DHPIFTSTNLIMMPREAPDRDPQKPRASWAAVYSTGLKSGFTRRLTPYGVADFSPAVSPS 61
Query: 151 GKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQA 210
G + AVASY +R W GE L+TDI F D +RV V E GGWPTW DST+YFHR++
Sbjct: 62 GVYTAVASYGARGWNGEVEVLSTDIYAFLTLDGTQRVKVVENGGWPTWVNDSTLYFHRRS 121
Query: 211 -DDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAF-HDGKRLAVATRRKNRNF 268
+DGW S++R P + RVTPPG+H FTPA+ + K +AVATRR ++
Sbjct: 122 EEDGWISVYRAILPSRGPTSIDSVIVDRVTPPGIHAFTPASSPGNNKFIAVATRRPYSDY 181
Query: 269 RHIEIYDLTLN----------PNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIP-HLEP 317
RH+E++DL N PN +H+NPF+S +S +GYHR G S +S+ LE
Sbjct: 182 RHVELFDLVKNGFTEFTRLIAPNTNHFNPFISPDSARVGYHRCSGSSNGKRSSSRFMLEN 241
Query: 318 VASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFY 377
+ SPV + + R++G FPS+S G I +GI + DG R ++ AF
Sbjct: 242 LKSPVPGISLFRIDGRFPSWSRGGDSIALTK----FSGIYVVNPDGLHR-RMVYPGLAFP 296
Query: 378 NSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGN 437
W P V+Y+STGP F S AT Q+ N
Sbjct: 297 TIWDPDRPGVVYSSTGPAFAS--ATTQLT--------------------------TNGDN 328
Query: 438 NAFPSCSPDGKFL--VFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
NAFP DG L VFR R+ L+++DAV GE G + ++ +G W DTM WSP G
Sbjct: 329 NAFPDRMGDGLCLGRVFRVVRT----LYIMDAVEGE-KGGLYRVIEGLWDDTMCDWSPDG 383
Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW 555
+ I F S+R P +F LY I P+G+GLR++ +G G R+NH+ S +G+
Sbjct: 384 EWIVFCSDREEP-GTGSFDLYFIHPNGTGLRKLLQSGSGG-------RVNHLYISPNGKS 435
Query: 556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
++FT + A+ AEP+S FQPYG++Y++ LDGSGL+RLT N +E+GTPAW P
Sbjct: 436 IVFTTDYTAISAEPISNQQMFQPYGEIYIINLDGSGLKRLTHNSFEDGTPAWGP 489
>gi|255557544|ref|XP_002519802.1| conserved hypothetical protein [Ricinus communis]
gi|223541041|gb|EEF42598.1| conserved hypothetical protein [Ricinus communis]
Length = 724
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 232/709 (32%), Positives = 335/709 (47%), Gaps = 138/709 (19%)
Query: 2 EPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFV--------- 52
E +G+I F RP D+FS P + E +TDG S N+N Q +
Sbjct: 3 EKRGSIAFFATYRPPVPLDIFSCSVP--PRSRQDELHMTDGLSYNYNCQIIPPEALKTII 60
Query: 53 ---------------DGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDR-- 95
G+ + F+SER + Q + PS+ F D
Sbjct: 61 KRPILASEAKEADVDSGRLTGLIFVSERDNNLETLQI--ALRFNDNRPSVKVFSFADVYG 118
Query: 96 --PVAR------------------NNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRL 135
V R + L ++ + + W+ +Y T+L+ + RL
Sbjct: 119 TFDVVRMEDSGCIAGGYKIGNRIVDYSLIHVTTKDPSKDRRQPWTVVYKTNLRTGRTERL 178
Query: 136 TPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQ-ESDPNKRVIVCERGG 194
TP GV D SPSVS SG+ +AVAS++ + W GE +L TDI V E P R+ V + GG
Sbjct: 179 TPPGVNDLSPSVSPSGRKVAVASFQGKGWNGEIEDLQTDIYVMNVEKPPLGRMRVIKNGG 238
Query: 195 WPTWSGDSTIYFHRQADDGWWSIFR--VSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFH 252
WPTW D+ I+FHR+ + +WS+FR +S E E L RVTP G+ TPAA
Sbjct: 239 WPTWGSDNIIFFHRKVGE-FWSVFRADISNGETSETL-------RVTPDGIDAITPAAI- 289
Query: 253 DGKRLAVATRRKNRNF---------RHIEIYDLT-----------LNPNFHHYNPFVSAN 292
+ ++AVAT R+ F RHIEI+D T P H+NPFV
Sbjct: 290 NATKVAVATIRQKPKFNDIRVEAQYRHIEIFDSTAPQQSIQITQKTRPKADHFNPFVIDG 349
Query: 293 SEFIGYHRFRGESTE-GQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFE 351
+ IGYHR + E + G H + SP ++ + R++G FP+FS DG + F D E
Sbjct: 350 GKRIGYHRCKSELLKSGDDIQRHFHKLKSPYPDVGLFRVSGVFPTFSKDGSKLAF-VDNE 408
Query: 352 LNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPT-----EKHVIYTSTGPIFQSERATVQIA 406
A + +A SDG + ++ + N +SP + +Y GP F + + T+QI
Sbjct: 409 FKA-VWVADSDGMR---IVFETKGPDNIFSPVWSQNPQDDTLYVCMGPSFNAGQ-TLQIC 463
Query: 407 RVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG----HKNL 462
+ S R ++ NNAFPS SPDG LVFRS R G +KNL
Sbjct: 464 AIPNVA--SGARRRRQL---------TRGFNNAFPSTSPDGTKLVFRSTRDGGDKQYKNL 512
Query: 463 FVL-DAVNGEF-NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA-------- 512
+++ DA GEF +G I +LT+GPW DT WSP+GD I FSS R P +
Sbjct: 513 YIMEDAKVGEFGDGKITRLTNGPWTDTHCQWSPRGDWIVFSSTRDKPKDAPDSDNGLDPG 572
Query: 513 -FSLYVIKP-DGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV 570
F+++++K D S + R+ +G + +G +NH FS DG + T++L AV +P+
Sbjct: 573 YFAVFLVKVNDPSVVIRVIKSGDDLAG-----HVNHPFFSPDGMSIAVTSDLAAVSVDPI 627
Query: 571 SWP---NQFQPYGDLYVVKLDGSGL---------RRLTWNGYENGTPAW 607
S P + +PYGDL+VV +D S + R+T + YEN TP W
Sbjct: 628 SLPLFLHSVRPYGDLFVVDIDPSDINKNKDVKKFNRITHSRYENSTPTW 676
>gi|255566336|ref|XP_002524154.1| conserved hypothetical protein [Ricinus communis]
gi|223536572|gb|EEF38217.1| conserved hypothetical protein [Ricinus communis]
Length = 724
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 231/707 (32%), Positives = 336/707 (47%), Gaps = 134/707 (18%)
Query: 2 EPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFV--------- 52
E +G+I F RP D+FS P + + E +TDG S N+N Q +
Sbjct: 3 EKRGSIAFFATYRPPVPLDIFSCSVPPTS--RQDELHMTDGLSYNYNCQLIPPEALKTII 60
Query: 53 ---------------DGQDQTIAFISERSGSPRI------YQTRPGSSKTELLPSI---- 87
G+ + F+SER + + P S K +
Sbjct: 61 KRPKLASEAKGSDVDSGRLSGLIFVSERDNNLETLHIALRFNDNPPSVKVFSFADVYGTF 120
Query: 88 --------PCSLFHDRPVAR--NNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTP 137
C + +R + L +++ + + W+ +Y T+LK K RLTP
Sbjct: 121 DGVRMEDSGCIAGGYKVGSRTADCSLIYVTTKDPSKDRRQPWTVVYKTNLKTGKTDRLTP 180
Query: 138 YGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQ-ESDPNKRVIVCERGGWP 196
GV D SPSVS SG+ +AVAS++ + W GE +L TDI V E P R+ V + GGWP
Sbjct: 181 SGVNDLSPSVSPSGRKVAVASFQGKGWNGEIEDLQTDIHVMNVEKQPLGRMKVIKNGGWP 240
Query: 197 TWSGDSTIYFHRQADDGWWSIFR--VSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDG 254
TW D+ I+FHR+ + +WS+FR +S + E L RVTP G+ TPAA +
Sbjct: 241 TWGSDNVIFFHRKVGE-FWSVFRADISNGQTSETL-------RVTPDGIDAITPAAINST 292
Query: 255 KRLAVATRRKNRNF---------RHIEIYDLT-----------LNPNFHHYNPFVSANSE 294
K +AVAT R+ F RHIEI+D T P HYNPFV +
Sbjct: 293 K-VAVATIRQKSKFSDIRVEAQYRHIEIFDSTAPQQPIQITQKTRPKADHYNPFVVDGGK 351
Query: 295 FIGYHRFRGE-STEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN 353
IGYHR + + G H + SP ++ + R++G FP+FS DG + F D E
Sbjct: 352 RIGYHRCKSDLLNHGDDIQRHFHKLNSPHPDVGLFRVSGVFPTFSKDGSKLAF-VDNEFK 410
Query: 354 AGIKIAKSDGSKRWTLIKDRTAFYNSWSPT-----EKHVIYTSTGPIFQSERATVQIARV 408
A + +A SDG + ++ + N +SP + +Y GP F + + T+QI +
Sbjct: 411 A-VWVADSDGLR---IVFETKGPDNIFSPVWSQNPQDDTLYVCMGPSFNAGQ-TLQICAI 465
Query: 409 SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG----HKNLFV 464
S R + LTK NNAFPS SPDG LVFRS R G +KNL++
Sbjct: 466 PNVA--SGARRRRQ-------LTK--GFNNAFPSTSPDGTKLVFRSTRDGGDKKYKNLYI 514
Query: 465 L-DAVNGEF-NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA---------F 513
+ DA GE+ +G + +LT+GPW DT WSP+GD I FSS R P + F
Sbjct: 515 MEDAQVGEYGDGKVTRLTNGPWTDTHCQWSPRGDWIVFSSTRDKPKDAPETDNGLDPGYF 574
Query: 514 SLYVIKP-DGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSW 572
+++++K D S + R+ G + +G +NH FS DG + T++L AV A+P+S
Sbjct: 575 AVFLVKVNDPSVVIRVIKGGDDLAG-----HVNHPFFSPDGMSIAVTSDLAAVSADPISL 629
Query: 573 P---NQFQPYGDLYVVKLDGSGL---------RRLTWNGYENGTPAW 607
P + +PYGD++ V +D + R+T + YEN TP W
Sbjct: 630 PLFLHSVRPYGDVFTVDIDPDDINKNKDVKKFNRITHSRYENSTPTW 676
>gi|255566348|ref|XP_002524160.1| conserved hypothetical protein [Ricinus communis]
gi|223536578|gb|EEF38223.1| conserved hypothetical protein [Ricinus communis]
Length = 724
Score = 269 bits (687), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 226/707 (31%), Positives = 328/707 (46%), Gaps = 134/707 (18%)
Query: 2 EPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFV--------- 52
E +G+I F RP D+FS P + + E +TDG S N+N Q +
Sbjct: 3 EKRGSIAFFATYRPPVPLDIFSCPVPPTS--RQDELHMTDGLSYNYNCQVIPPEALKVII 60
Query: 53 ---------------DGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPV 97
G+ + FISER S + PS+ F D
Sbjct: 61 KRPKLASEAKESDVDSGRLSGLIFISERDNSLETLHI--ALRFNDSPPSVKVFSFADVYG 118
Query: 98 ARNN----------------------KLFFISAHEQPDQIFKSWSALYSTDLKASKFTRL 135
N L +++ + + W+ +Y T+LK K RL
Sbjct: 119 TYNGVRMEDGGCIAGGYKVGNRTVDYSLIYVTTKDPSTDRRQPWTVVYKTNLKTGKTDRL 178
Query: 136 TPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQ-ESDPNKRVIVCERGG 194
TP GV D SPSVS S + IAVAS++ + W GE +L TDI V E P R+ V + GG
Sbjct: 179 TPSGVNDLSPSVSPSRRKIAVASFQGKGWNGEIEDLRTDIYVMNIEKPPLGRMRVIKNGG 238
Query: 195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDG 254
WPTW D+ I+FHR+ +WS+FR G VTP G++ TPAA +
Sbjct: 239 WPTWGSDNVIFFHRKVGK-FWSVFRADISN-----GQTSETVCVTPDGINAITPAAINST 292
Query: 255 KRLAVATRRKNRNF---------RHIEIYDLT-----------LNPNFHHYNPFVSANSE 294
K +AVAT R+ F RHIEI+D T H+NPF+ +
Sbjct: 293 K-VAVATIRQESKFSDIRLEAQYRHIEIFDSTAPQQSIQITQKTRSKADHFNPFIIDGGK 351
Query: 295 FIGYHRFRGESTE-GQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN 353
IGYHR + + + G H + SP ++ + R++G FP+FS DG + F D E
Sbjct: 352 RIGYHRCKSDLVKNGDDIQRHFHKLNSPHPDVGLFRVSGVFPTFSVDGSKLAF-VDNEFK 410
Query: 354 AGIKIAKSDGSKRWTLIKDRTAFYNSWSPT-----EKHVIYTSTGPIFQSERATVQIARV 408
A + +A S+G + ++ + N +SP + +Y GP F + ++ +QI +
Sbjct: 411 A-VWVADSNGLR---IVYETKGPDNIFSPVWSQNPQDDTLYVCMGPSFNAGQS-LQICAI 465
Query: 409 SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG----HKNLFV 464
S R + LTK NNAFPS SPDG LVFRS R G +KNL++
Sbjct: 466 PNVA--SGARRRRQ-------LTK--GFNNAFPSTSPDGTKLVFRSTRDGGDKKYKNLYI 514
Query: 465 L-DAVNGEF-NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA---------F 513
+ DA GE+ +G I +LT+GPW DT WSP+GD I FSS R P + F
Sbjct: 515 MEDAQVGEYGDGKITRLTNGPWTDTHCQWSPRGDWIVFSSTRDKPKDAPETDNGLDPGYF 574
Query: 514 SLYVIKP-DGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSW 572
+++++K D S + R+ +G + +G +NH FS DG + T++L AV A+P+S
Sbjct: 575 AVFLVKVNDPSVVIRVIKSGDDLAG-----HVNHPFFSPDGMSIAVTSDLAAVSADPISL 629
Query: 573 P---NQFQPYGDLYVVKLDGSGL---------RRLTWNGYENGTPAW 607
P + +PYGD++ V +D + R+T + YEN TP W
Sbjct: 630 PLFLHSVRPYGDVFTVDIDPDDINKNKDVKKFNRITHSRYENSTPTW 676
>gi|255557554|ref|XP_002519807.1| conserved hypothetical protein [Ricinus communis]
gi|223541046|gb|EEF42603.1| conserved hypothetical protein [Ricinus communis]
Length = 711
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 221/705 (31%), Positives = 323/705 (45%), Gaps = 133/705 (18%)
Query: 2 EPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFV--------- 52
E +G I F RP D+FS P K E +TDG N+N Q +
Sbjct: 3 EKRGCIAFFASYRPPVPLDIFS--CPVPPRTKQDEVHMTDGLFYNYNCQSIPPEALKTII 60
Query: 53 ---------------DGQDQTIAFISERSGS-------------------PRIYQTRPGS 78
G+ + F+SER + +Y T G
Sbjct: 61 KHPKLVPEAKESDVDSGRLSGMIFVSERKNNLETLHIGLRSRDKVKVFSFADVYGTFNGV 120
Query: 79 SKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPY 138
+ DR V ++ L +++ + + + W+ +Y T+L+ K RLTP
Sbjct: 121 RMEDSGCIAGGYKVGDRIV--DHSLVYVTTKDPSEDRRQPWTVVYKTNLRTGKTERLTPS 178
Query: 139 GVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQ-ESDPNKRVIVCERGGWPT 197
GV D SPSVS SG+ +AVAS++ R W GE +L TDI + E P R V + GGWPT
Sbjct: 179 GVNDLSPSVSPSGRKVAVASFQGRGWNGEIEDLQTDIYIMNIEKPPLGRTKVIKNGGWPT 238
Query: 198 WSGDSTIYFHRQADDGWWSIFR--VSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGK 255
W D+ I+FHR+ + +W +FR +S + E L RVTP G TPAA
Sbjct: 239 WGSDNVIFFHRKVGE-FWGVFRADISNGKASEIL-------RVTPDGFDAITPAAI-SAI 289
Query: 256 RLAVATRRKNRNF---------RHIEIYDLT-----------LNPNFHHYNPFVSANSEF 295
++AVAT R+ F RHIE++DLT P H+NPFV +
Sbjct: 290 KVAVATIRQKSKFTDVRVEAQYRHIEVFDLTAPKQPIQITQKTRPKDDHFNPFVIDGGKR 349
Query: 296 IGYHRFRGESTE-GQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA 354
IGYHR + + + G + H + SP ++ + R +G FP+FS DG + F ++
Sbjct: 350 IGYHRCKSDLLKNGDNIQRHFHKLDSPHPDVGLFRTSGVFPTFSKDGSKLAF-----VDN 404
Query: 355 GIKIAKSDGSKRWTLIKDRTAFYNSWSPT-----EKHVIYTSTGPIFQSERATVQIARVS 409
K D SK + + N +SP + +Y GP F S + +QI +
Sbjct: 405 EFKAVWIDDSKGLRSVYETKGPDNIFSPVWSQNPQDDTLYVCMGPPFNSGES-LQICAIP 463
Query: 410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG----HKNLFVL 465
S R ++ NNAFPS +PDG LVFRS R G +KNL+++
Sbjct: 464 NVA--SGARQRRQL---------TRGFNNAFPSTNPDGTKLVFRSTRDGGDKKYKNLYIM 512
Query: 466 -DAVNGEF-NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA---------FS 514
DA GE+ +G I +LT+GPWIDT WSP+G+ I FSS R P + F+
Sbjct: 513 EDARVGEYGDGKITRLTNGPWIDTHCQWSPRGNWIVFSSTRDKPKDAPETDNGLDPGYFA 572
Query: 515 LYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP- 573
++++K + S + V SGD +NH FS DG + T++L AV +PVS P
Sbjct: 573 VFLVKANDSSV----VVRVIKSGDNIAGHVNHPFFSPDGMSIAVTSDLAAVSVDPVSLPH 628
Query: 574 --NQFQPYGDLYVVKLDGSGL---------RRLTWNGYENGTPAW 607
+ +PYGD++ + +D + R+T + YEN TP+W
Sbjct: 629 FLHSVRPYGDVFTLDIDPDDINKNKDLKKFNRITHSRYENATPSW 673
>gi|242072218|ref|XP_002446045.1| hypothetical protein SORBIDRAFT_06g000930 [Sorghum bicolor]
gi|241937228|gb|EES10373.1| hypothetical protein SORBIDRAFT_06g000930 [Sorghum bicolor]
Length = 730
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 220/714 (30%), Positives = 323/714 (45%), Gaps = 143/714 (20%)
Query: 2 EPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFV--------- 52
E +G+I F RP D+FS+ +P + E LTDG S N+N + +
Sbjct: 3 ESRGSIAFFATYRPPMPLDIFSVPNP--PSSIRDEVHLTDGVSYNYNCRPIPKDALKSLL 60
Query: 53 -----------------DGQDQTIAFISERSGSPRI------YQTRPGSSKTELLPSIPC 89
G+ + F+SER G + G ++
Sbjct: 61 KRPKLVAEGGATDADVDSGRVSGLLFVSERDGGLETLRVALRFDDSGGKQTCKVFSLADV 120
Query: 90 SLFHDRPVAR------------------NNKLFFISAHEQPDQIFKSWSALYSTDLKASK 131
D AR ++ L ++S E ++ W+ +Y T+L+ K
Sbjct: 121 FGAADFTGARLEDSGCIGGGYKMGSRSVDHSLIYVSTKEPVEERRSPWTVVYKTNLRTGK 180
Query: 132 FTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCE 191
RLTP G D SP+VS SGK +A+A++ W GE +L TDI V P R + +
Sbjct: 181 TERLTPKGQFDLSPAVSPSGKKVAMATFRPEGWEGEIEDLQTDIFVMNVERPPMRKRLIK 240
Query: 192 RGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAF 251
GGWP+W+ D I+FHR+ D W +FR N RVTP TPAA
Sbjct: 241 NGGWPSWASDDVIFFHRKVGDT-WGVFRHDTRTN--------ETVRVTPEAFDAVTPAAI 291
Query: 252 HDGKRLAVATRRKNRNF---------RHIEIYDLT-------------LNPNFHHYNPFV 289
+ K +AVAT R+ F RHIEI+D P H+NPFV
Sbjct: 292 SETK-VAVATIRQKSKFTDVRVEAQYRHIEIFDTAAGAGQPPLQITQKTRPKTDHFNPFV 350
Query: 290 SANSEFIGYHRFRGESTEGQSTIP-HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH 348
+ +GYHR R + + +P + + SPVK++ R++G FP+ S DG + F
Sbjct: 351 LDDGGRVGYHRARSDLLKHGDDVPRNFHKMESPVKDVGTFRVSGVFPTISNDGSKLAFV- 409
Query: 349 DFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPT-----EKHVIYTSTGPIFQSER--A 401
D E A + +A S G + ++ + N ++P +K ++Y GP F + +
Sbjct: 410 DNEFKA-VWVADSQGLR---VVYETKGPDNIFAPMWNQNPDKDILYVCMGPSFNAGKPLE 465
Query: 402 TVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG--- 458
I VS S R + LTK + NNAFPS SPDG VFRS R G
Sbjct: 466 ICAIPNVS-----SGTRQRRQ-------LTKGKF-NNAFPSSSPDGSRFVFRSTRDGGDK 512
Query: 459 -HKNLFVL-DAVNGEFN-GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA--- 512
HKNL++ DA GE++ G + +LT+G W DT WSP+GD I FSS R P +
Sbjct: 513 KHKNLYIAEDAEVGEYSGGTVTRLTNGEWTDTHCQWSPRGDWIVFSSTRDKPKDAPELDN 572
Query: 513 ------FSLYVIK-PDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV 565
++++++K D + + R+ +G + G +NH FS DG + TA+L AV
Sbjct: 573 GLDSGYYAVFMVKVSDPTVVIRVVQSGDDLGG-----HVNHPVFSPDGRSIAMTADLAAV 627
Query: 566 MAEPVSWP---NQFQPYGDLYVVKLDGSGLR---------RLTWNGYENGTPAW 607
A+P+S P + +PYGD++VV +D R R+T + YE TPAW
Sbjct: 628 SADPISLPLFIHSVRPYGDIFVVDIDPDDARKNKDVKKFHRVTHSRYEYSTPAW 681
>gi|357147755|ref|XP_003574472.1| PREDICTED: uncharacterized protein LOC100838501 [Brachypodium
distachyon]
Length = 752
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 192/583 (32%), Positives = 284/583 (48%), Gaps = 102/583 (17%)
Query: 100 NNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASY 159
++ L ++S E W+ +Y T+L+ K RLTP G D SP+VS SGK +AVAS+
Sbjct: 147 DHSLIYVSTKEPVKDRRSPWTVVYKTNLRTGKTERLTPKGAYDLSPAVSPSGKKVAVASF 206
Query: 160 ESRPWPGEFHELNTDIVVFQ-ESDPNKRVIVCERGGWPTWSGDSTIYFHRQAD------- 211
+ W GE L TDI V E P R ++ + GGWP+W ++ ++FHR +D
Sbjct: 207 RAEGWQGEIENLKTDIFVMNVEKPPLGRKLLVKDGGWPSWGSENFVFFHRGSDKTLPSGM 266
Query: 212 -DGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNF-- 268
+ W++FR+ RVTP G+ FTPAA + K +AVAT R+ F
Sbjct: 267 IETSWAVFRLDVATG--------ETVRVTPEGLDAFTPAAISETK-VAVATIRQKSKFSD 317
Query: 269 -------RHIEIYDLTLN-----------PNFHHYNPFVSANSEFIGYHRFRGESTEGQS 310
RHIEI+D+ P HYNPFV +GYHR R + +
Sbjct: 318 VRVEAQYRHIEIFDVAAGAPVQQITQKTRPKGDHYNPFVLDGGARVGYHRVRSDLLKPGD 377
Query: 311 TIP-HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTL 369
+P + + SP+K++ + R++G FP+ S DG + F D E A + +A S G + +
Sbjct: 378 DVPRNFHKLESPLKDVGLFRVSGVFPTISKDGSKLAFV-DNEFKA-VWVADSQGLRIVHV 435
Query: 370 IKDRTAFYNS-WSPT-EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDV 427
K + +++ W+ +K V+Y GP F + + ++I + + D ++R+
Sbjct: 436 TKGPDSIFSTMWNQNPDKDVLYVCKGPSFNAGKP-LEIHAIP-NVSSGDGHSRQ------ 487
Query: 428 KILTKEETGNNAFPSCSPDGKFLVFRSGR------SGHKNLFVL-DAVNGEFNGD----- 475
LTK + NNAFPS SPDG VFRS R HKNL+++ D GE+ D
Sbjct: 488 --LTKGKF-NNAFPSSSPDGTRFVFRSTRDHAKSEKKHKNLYIMEDQEFGEYGYDTVVPK 544
Query: 476 IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA---------FSLYVIKP-DGSGL 525
+ +LTDG W DT WSP GD I FSS R P F+++++K D + +
Sbjct: 545 VTRLTDGEWTDTHCQWSPSGDWIVFSSTRDKPATAAPTDHGLDPGYFAVFMVKASDPTVV 604
Query: 526 RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP---NQFQPYGDL 582
R+ GSGD +NH FS DG + TA+L AV A+P+S P + +PYGD+
Sbjct: 605 IRV-----VGSGDDLSGHVNHPVFSPDGRTIAVTADLAAVSADPISLPLFLHSVRPYGDI 659
Query: 583 YVVKLD------------------GSGLRRLTWNGYENGTPAW 607
+ V +D R+T + YE TP W
Sbjct: 660 FAVDIDDILRLGDDVEKLKKIKDLKKKFHRITHSRYEYSTPEW 702
>gi|302141778|emb|CBI18981.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 160/384 (41%), Positives = 206/384 (53%), Gaps = 73/384 (19%)
Query: 237 RVTPPGVHCFTPAAFHDGKR-LAVATRRKNRNFRHIEIYDLTLN----------PNFHHY 285
RVTPPG+H FTPA K +AVATRR N ++RHIE++DL N P HH+
Sbjct: 179 RVTPPGLHAFTPATSPGNKNFIAVATRRLNSDYRHIELFDLLSNEFRELTRRISPQTHHF 238
Query: 286 NPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIV 345
NPF+S +S IGYHR RG+S G+S LE + SP+ E+ + R +GSFPSFSP G I
Sbjct: 239 NPFISPDSTRIGYHRCRGDSNGGKSPHLLLENLKSPLPEISLFRFDGSFPSFSPGGDRIA 298
Query: 346 FNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQI 405
+ E G+ + DGS R + AF +W K V+YTS GP F +E V I
Sbjct: 299 Y---VEF-PGVYVVNRDGSGRREVFSG-IAFSTAWDHKRKGVVYTSAGPTFATESTKVDI 353
Query: 406 ARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVL 465
VS +D D P K+ T
Sbjct: 354 --VSINVDDVDQ------PSYKKLTT---------------------------------- 371
Query: 466 DAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL 525
G I +LT+GPW DTM +WSP GD I F+S+R NP F LYVI P+G+GL
Sbjct: 372 -------GGGIHRLTEGPWTDTMCNWSPDGDWIVFASDRENPGG-GGFELYVIHPNGTGL 423
Query: 526 RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVV 585
R++ +G G R NH FS DG+ ++FT++ AV AEP+S + +QPYGD++VV
Sbjct: 424 RKVVHSGSAG-------RTNHPWFSPDGKSIVFTSDYAAVSAEPISNAHHYQPYGDIFVV 476
Query: 586 KLDGSGLRRLTWNGYENGTPAWHP 609
LDGSGL RLT N YE+GTPAW P
Sbjct: 477 NLDGSGLHRLTHNSYEDGTPAWAP 500
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 69/171 (40%), Gaps = 37/171 (21%)
Query: 12 VGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQ-DQTIAFISERSGSPR 70
+GR Y FDVFS+ + + E R+TDG S+NFN F +A + R+GS
Sbjct: 47 LGRSDYAFDVFSLPT-LGPSTIADELRITDGQSVNFNGHFPSSPIISLLANQTLRNGSSN 105
Query: 71 IY-----------QTRPGSSKTELLPSIPC-----------SLFHDRPVARNNKLFFISA 108
IY R + +T + +P DRP L ++S
Sbjct: 106 IYLDIIYYDTPTNSRRRSALETAVRVEVPLLGTNTEQSDGRISMKDRPSLVGEDLVYVST 165
Query: 109 HEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGK-FIAVAS 158
HE S + R+TP G+ ++P+ S K FIAVA+
Sbjct: 166 HED------------SGVPRKMVIERVTPPGLHAFTPATSPGNKNFIAVAT 204
>gi|115452667|ref|NP_001049934.1| Os03g0314500 [Oryza sativa Japonica Group]
gi|108707813|gb|ABF95608.1| WD40-like Beta Propeller Repeat family protein, expressed [Oryza
sativa Japonica Group]
gi|113548405|dbj|BAF11848.1| Os03g0314500 [Oryza sativa Japonica Group]
gi|125586045|gb|EAZ26709.1| hypothetical protein OsJ_10615 [Oryza sativa Japonica Group]
Length = 730
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 185/564 (32%), Positives = 278/564 (49%), Gaps = 84/564 (14%)
Query: 100 NNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASY 159
++ L ++S E + W+ Y T+L+ + RLTP G D SPSVS SGK +AVASY
Sbjct: 146 DHYLVYVSTKEPVRERRSPWNVAYKTNLRTGETERLTPPGTFDISPSVSPSGKKVAVASY 205
Query: 160 ESRPWPGEFHELNTDIVVFQESDPNK-RVIVCERGGWPTWSGDSTIYFHRQADDG---WW 215
+ + W GE LNT+I V +P++ R V E GGWP+W + I+FHR+ DG W
Sbjct: 206 QGKKWDGEIKNLNTNIYVMSLENPSQDRERVIENGGWPSWGSEDVIFFHRKDGDGENSCW 265
Query: 216 SIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNF------- 268
+FR + RVTP TPAA D R+AVA R+ F
Sbjct: 266 GVFRHTLSTG--------ETVRVTPAAFDSVTPAAI-DETRVAVAAIRQKSEFSDVRVEA 316
Query: 269 --RHIEIYDL-----------TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPH- 314
RHIE++D+ P H+NPFV +FIGYHR + E + +P
Sbjct: 317 QYRHIEVFDMRSPEQPMQITRNTRPKADHFNPFVMDGGKFIGYHRCKSELLQHGDDLPRK 376
Query: 315 LEPVASPVKELRMLRLNGSFPSFSPDGGLIVF-NHDFELNAGIKIAKSDGSKRWTLIKDR 373
+ SP +++ + R++G FP+FS DG + F +++F+ + +A S G +
Sbjct: 377 FHKLQSPHEDVGVFRVSGVFPTFSKDGSQLAFVDNEFK---SVWLADSQGMRVVFKTDGP 433
Query: 374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE 433
+ ++ ++K ++Y GP F++ T++I + + D +R+ LT
Sbjct: 434 DSVFSPLWNSKKDILYVCMGPSFKASE-TLEIHSI-HNVSTGDRKSRQ--------LTFG 483
Query: 434 ETGNNAFPSCSPDGKFLVFRSGRSG----HKNLFVL---DAVNGE--FNGDIRQLTDGPW 484
NNAFPS +PDG VFRS R G KNL+++ DA GE + ++T G W
Sbjct: 484 GF-NNAFPSTNPDGTKFVFRSTRDGGAKYSKNLYIMEDADAGEGEDGSQSTVTRMTAGEW 542
Query: 485 IDTMPSWSPKGDLIAFSSNRHNPDNVEA---------FSLYVIKPDGSGLRRIHVAGPEG 535
DT WSP G I FSSNR P + F++Y++ + R+ +G +
Sbjct: 543 TDTHCQWSPNGKWIVFSSNRDRPADAPERDHGLDPGYFAVYLMDVASRSVVRVIRSGYDV 602
Query: 536 SGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP---NQFQPYGDLYVVKLDG--- 589
+G +NH FS DG + T++L AV A+P+S P + +PYGD++ V +D
Sbjct: 603 AG-----HVNHPVFSPDGRSIAVTSDLAAVTADPMSLPLFLHSVRPYGDIFTVDIDPDDM 657
Query: 590 ------SGLRRLTWNGYENGTPAW 607
G R+T + YEN TPAW
Sbjct: 658 ARNEDVEGFVRVTHSRYENSTPAW 681
>gi|125543618|gb|EAY89757.1| hypothetical protein OsI_11300 [Oryza sativa Indica Group]
Length = 737
Score = 254 bits (650), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 183/564 (32%), Positives = 278/564 (49%), Gaps = 84/564 (14%)
Query: 100 NNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASY 159
++ L ++S E + W+ Y T+L+ + RLTP G D SPSVS SGK +AVASY
Sbjct: 153 DHYLVYVSTKEPVRERRSPWNVAYKTNLRTGETERLTPPGTFDISPSVSPSGKKVAVASY 212
Query: 160 ESRPWPGEFHELNTDIVVFQESDPNK-RVIVCERGGWPTWSGDSTIYFHRQ---ADDGWW 215
+ + W GE LNT+I V +P++ R V E GGWP+W + I+FHR+ ++ W
Sbjct: 213 QGKKWDGEIKNLNTNIYVMSLENPSQDRERVIENGGWPSWGSEDVIFFHRKDGGGENSCW 272
Query: 216 SIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNF------- 268
+FR + RVTP TPAA D R+AVA R+ F
Sbjct: 273 GVFRHTLSTG--------ETVRVTPAAFDAVTPAAI-DETRVAVAAIRQKSEFSDVRVEA 323
Query: 269 --RHIEIYDL-----------TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPH- 314
RHIE++D+ P H+NPFV +FIGYHR + E + +P
Sbjct: 324 QYRHIEVFDMRSPEQPMQITRNTRPKADHFNPFVMDGGKFIGYHRCKSELLQHGDDLPRK 383
Query: 315 LEPVASPVKELRMLRLNGSFPSFSPDGGLIVF-NHDFELNAGIKIAKSDGSKRWTLIKDR 373
+ SP +++ + R++G FP+FS DG + F +++F+ + +A S G +
Sbjct: 384 FHKLQSPHEDVGVFRVSGVFPTFSKDGSQLAFVDNEFK---SVWLADSQGMRVVFKTDGP 440
Query: 374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE 433
+ ++ ++K ++Y GP F++ T++I + + D +R+ LT
Sbjct: 441 DSVFSPLWNSKKDILYVCMGPSFKASE-TLEIHSI-HNVSTGDRKSRQ--------LTFG 490
Query: 434 ETGNNAFPSCSPDGKFLVFRSGRSG----HKNLFVL---DAVNGE--FNGDIRQLTDGPW 484
NNAFPS +PDG VFRS R G KNL+++ DA GE + ++T G W
Sbjct: 491 GF-NNAFPSTNPDGTKFVFRSTRDGGAKYSKNLYIMEDADAGEGEDGSQSTVTRMTAGEW 549
Query: 485 IDTMPSWSPKGDLIAFSSNRHNPDNVEA---------FSLYVIKPDGSGLRRIHVAGPEG 535
DT WSP G I FSSNR P + F++Y++ + R+ +G +
Sbjct: 550 TDTHCQWSPNGKWIVFSSNRDRPADAPERDHGLDPGYFAVYLMDVASRSVVRVIRSGYDV 609
Query: 536 SGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP---NQFQPYGDLYVVKLDG--- 589
+G +NH FS DG + T++L AV A+P+S P + +PYGD++ V +D
Sbjct: 610 AG-----HVNHPVFSPDGRSIAVTSDLAAVTADPMSLPLFLHSVRPYGDIFTVDIDPDDM 664
Query: 590 ------SGLRRLTWNGYENGTPAW 607
G R+T + YEN TPAW
Sbjct: 665 ARNEDVEGFVRVTHSRYENSTPAW 688
>gi|242041123|ref|XP_002467956.1| hypothetical protein SORBIDRAFT_01g037140 [Sorghum bicolor]
gi|241921810|gb|EER94954.1| hypothetical protein SORBIDRAFT_01g037140 [Sorghum bicolor]
Length = 724
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 219/701 (31%), Positives = 321/701 (45%), Gaps = 123/701 (17%)
Query: 2 EPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFV--------- 52
E +G+I F T RP D+F P + K E LTDG S N+N + +
Sbjct: 3 ESRGSIAFFTSYRPPVALDIFCCPVP--PSSKQDELHLTDGLSYNYNCRPIPPAALKTII 60
Query: 53 ----------------DGQDQTIAFISERSGSPRIYQTR-----PGSSKTELLPSIPCS- 90
G + F+SER S K L I S
Sbjct: 61 KRLRLAPEAVIDDDVDSGHLTGLVFVSEREHSLETLHVALRFVANNEVKIFSLADIYGSD 120
Query: 91 LFHDRPVARN---------------NKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRL 135
LF + N + L ++S E + W+ +Y T+L+ S+ L
Sbjct: 121 LFSGARLEDNGCIAGGYEVDGSTNDHYLVYVSTKEPVQERRSPWNVVYKTNLRTSETEHL 180
Query: 136 TPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQ-ESDPNKRVIVCERGG 194
TP G D SPSVS SGK IAVAS++ + W GE +L T+I + E+ P +R V E GG
Sbjct: 181 TPPGTFDLSPSVSPSGKKIAVASFQGKTWDGEIKDLKTNIYLTSLENPPLERRRVIENGG 240
Query: 195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDG 254
WP+W ++ I+FHR+ D W +FR + RVTP TPAA D
Sbjct: 241 WPSWGSENVIFFHRKVGD-IWGVFRYNLSTG--------ETVRVTPEAFDAVTPAAI-DE 290
Query: 255 KRLAVATRRKNRNF---------RHIEIYD-------LTLNPNFH----HYNPFVSANSE 294
R+AVAT R+ F RHIEI+D L + N H+NPFV
Sbjct: 291 TRVAVATIRQKSEFTDVRNEAQYRHIEIFDTSAQEQPLQITQNTRAKADHFNPFVMDGGN 350
Query: 295 FIGYHRFRGESTEGQSTIP-HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN 353
YHR + + + +P H V SP +++ + R++G FP+FS DG + F D E
Sbjct: 351 TY-YHRCKSDLLKHGDDVPRHFHKVQSPHEDVGVFRVSGVFPTFSKDGSKLAFV-DNEFK 408
Query: 354 AGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD 413
A + +A S G + + ++ +K ++Y GP F++ T++I +
Sbjct: 409 A-VWLADSHGLRVVFETDGPDSIFSPVWNQKKDILYVCMGPSFKANE-TLEIYAI----- 461
Query: 414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG----HKNLFVL-DAV 468
D + + LTK + NNAFP +PDG VFRS R G +KNL+++ DA
Sbjct: 462 -PDVSRGARARRHTRQLTKGKF-NNAFPFTNPDGTKFVFRSTRDGGDKNYKNLYIMEDAE 519
Query: 469 NGEF-NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA---------FSLYVI 518
GE G + +LT+G WIDT WSP G+L+ F+SNR P + F++Y++
Sbjct: 520 FGEVGGGKVTRLTEGSWIDTHCQWSPDGNLVVFASNRDKPADAPERDHGLDPGYFAVYLM 579
Query: 519 KPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP---NQ 575
+ R+ +G + SG +NH FS DG + T++L AV A+P+S P +
Sbjct: 580 NVSDRSVVRVIRSGYDLSG-----HVNHPVFSPDGRSIAVTSDLAAVSADPMSLPTFLHS 634
Query: 576 FQPYGDLYVVKLDGSGLR---------RLTWNGYENGTPAW 607
+PYGD++ V +D + R+T + YEN TPAW
Sbjct: 635 VRPYGDIFSVDIDPDDMEKNKDLDKFVRVTHSRYENSTPAW 675
>gi|357141326|ref|XP_003572184.1| PREDICTED: uncharacterized protein LOC100846313 [Brachypodium
distachyon]
Length = 765
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 192/589 (32%), Positives = 283/589 (48%), Gaps = 101/589 (17%)
Query: 100 NNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASY 159
++ L ++S E W+ +Y T+L+ K RLTP G D SP+VS SGK +AVAS+
Sbjct: 147 DHSLIYVSTKEPVKDRRSPWTVVYKTNLRTGKTERLTPKGAYDLSPAVSPSGKKVAVASF 206
Query: 160 ESRPWPGEFHELNTDIVVFQ-ESDPNKRVIVCERGGWPTWSGDSTIYFHRQAD------- 211
+ W GE L TDI V E P R ++ + GGWP+W ++ ++FHR +D
Sbjct: 207 RAEGWQGEIENLKTDIFVMNVEKPPLGRKLLVKDGGWPSWGSENFVFFHRGSDKTLPSGM 266
Query: 212 -DGWWSIFRVSF---------PENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVAT 261
+ W++FR+ PE L+ RVTP G+ FTPAA + K +AVAT
Sbjct: 267 IETSWAVFRLDVATGETVRVTPEGLDVATGET--VRVTPEGLDAFTPAAISETK-VAVAT 323
Query: 262 RRKNRNF---------RHIEIYDLTLN------------PNFHHYNPFVSANSEFIGYHR 300
R+ F RHIEI+D+ P HYNPFV +GYHR
Sbjct: 324 IRQKSKFSDVRVEAQYRHIEIFDVAAGGAQAQQITQKTRPKGDHYNPFVLDGGARVGYHR 383
Query: 301 FRGESTEGQSTIP-HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIA 359
R + + +P + + SP+K++ + R++G FP+ S DG + F D E A + +A
Sbjct: 384 VRSDLLKPGDDVPRNFHKLESPLKDVGLFRVSGVFPTISKDGSKLAFV-DNEFKA-VWVA 441
Query: 360 KSDGSKRWTLIKDRTAFYNS-WSPT-EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDD 417
+ G + K + +++ W+ +K V+Y GP F + + ++I +
Sbjct: 442 DAQGLRIVYETKGPDSIFSTMWNQNPDKDVLYVCMGPSFNAGKP-LEICAIP-------- 492
Query: 418 NNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRS------GHKNLFVL-DAVNG 470
N ++LTK + NNAFPS SPDG VFRS R HKNL+++ D G
Sbjct: 493 -NVSSGARQRRLLTKGKF-NNAFPSSSPDGTRFVFRSTRDHAKSERKHKNLYIMEDQEVG 550
Query: 471 EF--NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA---------FSLYVIK 519
E+ G + +LTDG W DT WSP GD I FSS R P F+++++K
Sbjct: 551 EYGEGGKVTRLTDGEWTDTHCQWSPSGDWIVFSSTRDKPPTAAPLDHGLDPGYFAVFMVK 610
Query: 520 PDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP---NQF 576
+ V GSGD +NH FS +G + T++L AV A+P+S P +
Sbjct: 611 ASDPAV----VIRVVGSGDDLSGHVNHPVFSPNGRSIAVTSDLAAVSADPISLPLFLHSV 666
Query: 577 QPYGDLYVVKLDG--------------SGLR----RLTWNGYENGTPAW 607
+PYGD++ V +D LR R+T + YE TP W
Sbjct: 667 RPYGDIFAVDIDDILRLGDDAEKLKKIKDLRRKFHRITHSRYEYSTPEW 715
>gi|326520960|dbj|BAJ92843.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 754
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 188/574 (32%), Positives = 277/574 (48%), Gaps = 89/574 (15%)
Query: 98 ARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVA 157
A ++ L ++S E + W+ +Y T+L K RLTP G D SP+VS SGK +AVA
Sbjct: 155 AVSHSLVYVSTKEPVTKRRTPWTVVYRTNLADGKTERLTPPGQYDVSPAVSPSGKMVAVA 214
Query: 158 SYESRPWPGEFHELNTDIVVFQESDPN----KRVIVCERGGWPTWSGDSTIYFHRQADDG 213
++ W GE LNTDI V +R ++ GGWPTW D+ I+FHR +
Sbjct: 215 NFRGNKWTGEIERLNTDIAVMNVDKTAQGGLRRKVLIRDGGWPTWGSDNVIFFHRGTGES 274
Query: 214 --WWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVAT-RRKNR---- 266
W++FR A RVTP + TPAA + R+AVAT R+K+R
Sbjct: 275 PTNWAVFRYDIATK--------ATVRVTPEAIDAMTPAAISE-SRVAVATIRQKSRQAAM 325
Query: 267 -------NFRHIEIYDLT-----------LNPNFHHYNPFVSANSEFIGYHRFRGE---- 304
+RHIEI+D++ + P HYNPFV+ IGYHR R +
Sbjct: 326 TTPREEAQYRHIEIFDVSSPDQPMQISQKIRPKGDHYNPFVADAGSRIGYHRVRTDDLVI 385
Query: 305 STEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGS 364
+ + + SP ++ + R++G FP+ S DG + F D E A + +A + G
Sbjct: 386 GNNLSAPTKSFDKMHSPHTDVGLFRVSGVFPTISKDGAKLAFV-DNEFKA-VWLADTQGL 443
Query: 365 KRWTLIKDRTA-FYNSWSPT-EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREE 422
+ + A F +W+ +K +Y GP F + + ++I +S PS +
Sbjct: 444 RVVYEKRGSNAVFSTAWNQNPDKDTLYVCVGPSFSAAKP-LEIYAISNASGPSAGRKVQR 502
Query: 423 IPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG-----HKNLFVL-DAVNGEFN-GD 475
+ + NNAFPS +P G VFRS R G HKNL+++ DA GEF+ G
Sbjct: 503 L--------TDGNFNNAFPSSNPQGDKFVFRSTRDGGKEKFHKNLYIMEDAEVGEFSEGT 554
Query: 476 IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA--------FSLYVIK-PDGSGLR 526
+ +LTDGPW DT SWSP+GD + FSS R P + F++Y++K D + +
Sbjct: 555 VTRLTDGPWTDTHCSWSPRGDWVVFSSTREMPPSAPEMAFLDAGYFAVYLVKVSDPTAVV 614
Query: 527 RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP---NQFQPYGDLY 583
R+ + +G +NH FS D ++F ++L AV EP+S P + +PYGD+
Sbjct: 615 RVVQSSATLAG-----HVNHPIFSPDMRSIVFASDLAAVSNEPISMPVFLHSVRPYGDIL 669
Query: 584 VVKL----------DGSGLRRLTWNGYENGTPAW 607
V L D R+T + YE TP W
Sbjct: 670 SVDLRDTDDIAKNKDIQEFHRITHSRYEYSTPTW 703
>gi|413917762|gb|AFW57694.1| putative WD40-like beta propeller repeat family protein [Zea mays]
Length = 730
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 189/567 (33%), Positives = 278/567 (49%), Gaps = 92/567 (16%)
Query: 100 NNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASY 159
++ L ++S E + W+ +Y T+L+ K RLTP G D SP+VS SGK +A+A++
Sbjct: 148 DHSLIYVSTKEPVQERRSPWTVVYKTNLRTGKTERLTPKGQFDLSPAVSPSGKKVAMATF 207
Query: 160 ESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFR 219
W GE +L TDI V P R + GGWP+W+ + I+FHR+ + W +FR
Sbjct: 208 RPEGWEGEIEDLQTDIFVMNVERPPMRKRLIRNGGWPSWASEDVIFFHRKVGET-WGVFR 266
Query: 220 VSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNF---------RH 270
N RVTP TPAA D K +AVAT R+ F RH
Sbjct: 267 HDTRTN--------ETVRVTPEAFDAMTPAAISDTK-VAVATIRQKSKFSDVRVEAQYRH 317
Query: 271 IEIYDLT-------------LNPNFHHYNPFVSANSEFIGYHRFRGESTE-GQSTIP-HL 315
IEI+D P H+NPFV + +GYHR R + + G + +
Sbjct: 318 IEIFDTAAAAGQPSVQVTQKTRPKADHFNPFVLDDGVRVGYHRARSDLVKPGDDVLSRNF 377
Query: 316 EPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTA 375
+ + SPVK++ + R++G FP+ S DG + F D E A + +A S G + ++ +
Sbjct: 378 DKIESPVKDVGLFRVSGVFPTISKDGSKLAFV-DNEFKA-VWVADSQGLR---VVYETKG 432
Query: 376 FYNSWSPT-----EKHVIYTSTGPIFQSER--ATVQIARVSFQLDPSDDNNREEIPCDVK 428
N +SP +K ++Y GP F + + I VS S R +
Sbjct: 433 PDNIFSPMWNQNPDKDILYVCMGPSFNAGKPLEICAIPNVS-----SGARQRRQ------ 481
Query: 429 ILTKEETGNNAFPSCSPDGKFLVFRSGRSG----HKNLFVLD-AVNGEF-NGDIRQLTDG 482
LTK + NNAFPS SPDG VFRS R G HKNL++ + A GE+ +G + +LT+G
Sbjct: 482 -LTKGKF-NNAFPSSSPDGNRFVFRSTRDGGDKKHKNLYIAENAEVGEYGDGTVTRLTNG 539
Query: 483 PWIDTMPSWSPKGDLIAFSSNRHNPDNVEA---------FSLYVIKP-DGSGLRRIHVAG 532
W DT WSP GD I FSS R P + F+++++K D + + R+ +G
Sbjct: 540 EWTDTHCQWSPSGDWIVFSSTRDKPKDAPELDNGLDPGYFAVFMVKASDPTVVIRVIRSG 599
Query: 533 PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP---NQFQPYGDLYVVKLDG 589
+ G +NH FS DG ++ T++L AV A+P+S P + +PYGD++VV +D
Sbjct: 600 DDLGG-----HVNHPVFSPDGRSIVVTSDLAAVSADPISLPLFIHSVRPYGDIFVVDIDP 654
Query: 590 ---------SGLRRLTWNGYENGTPAW 607
R+T + YE TP W
Sbjct: 655 EDASKNKDVKKFHRVTHSRYEYSTPTW 681
>gi|125544252|gb|EAY90391.1| hypothetical protein OsI_11968 [Oryza sativa Indica Group]
Length = 744
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 195/579 (33%), Positives = 278/579 (48%), Gaps = 89/579 (15%)
Query: 92 FHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSG 151
+ +R A ++ L ++S E W+ +Y T+L+ + RLTP G D SP+VS SG
Sbjct: 140 YRERGRAVDHTLVYVSTREPVAARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSG 199
Query: 152 KFIAVASYESRP--WPGEFHELNTDIVVFQESDP--NKRVIVCERGGWPTWSGDSTIYFH 207
K +AVAS++ +P W GE +L TDI V P + V + GWPTW D I+FH
Sbjct: 200 KRVAVASWQGKPGLWDGEIEDLRTDIYVMNVHKPPLGRTGPVVKNAGWPTWGSDDVIFFH 259
Query: 208 RQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNR- 266
R+ W +FR S E RVTP TPAA + K RRK++
Sbjct: 260 RRVGTT-WGVFRFSMSTGEE--------ARVTPEEFDAVTPAAISETKVAVATIRRKSQF 310
Query: 267 -------NFRHIEIYDLT-----------LNPNFHHYNPFVSANSEFIGYHRFRGESTE- 307
+RHIEI+D+ P H+NPFV IGYHR + E
Sbjct: 311 SDVRVEEQYRHIEIFDVASPEQPVKITQKTRPKTDHFNPFVLDGGSRIGYHRCKSEQLHQ 370
Query: 308 -----GQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD 362
G S + + SP K++ + R++G P+ S DG + F D E A + +A S
Sbjct: 371 NNGGGGSSVANNFHKLQSPHKDVGLFRVSGVCPTISKDGSKLAFV-DNEFKA-VWLADSH 428
Query: 363 GSKRWTLIKD-RTAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR 420
G + K + F +W+ T +Y GP F +++ +QI + D S R
Sbjct: 429 GLRVVYEKKGPNSVFSTAWNQNTALDTLYVCVGPSFSADKP-LQIYAIH---DVSALGGR 484
Query: 421 EEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR------SGHKNLFVL-DAVNGEF- 472
++ + LT + NNAFPS SPDG LVFRS R HKNL+V+ DA GEF
Sbjct: 485 QQ-----RRLTAGAS-NNAFPSSSPDGGRLVFRSTRDGGGGGRRHKNLYVMEDAAVGEFG 538
Query: 473 NGDIRQLTDGPWIDTMPSWSPK--GDLIAFSSNRHNPDNVEA---------FSLYVIKP- 520
G + +LT G W DT SWSP+ D I FSS R P A F++++++
Sbjct: 539 TGKVTRLTSGAWTDTHCSWSPREGSDWIVFSSTRDKPAAAPADDNGLDPGYFAVFLVRAS 598
Query: 521 DGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP---NQFQ 577
D + + R+ + +G V NH FS DG + TA+L AV A+P+S P + +
Sbjct: 599 DPTVVVRVVRSADSVAGHV-----NHPVFSPDGRSIAVTADLAAVSADPISLPLFLHSVR 653
Query: 578 PYGDLYVVKLDGSGL---------RRLTWNGYENGTPAW 607
PYGD++ V +D + R+T + YEN TPAW
Sbjct: 654 PYGDIFTVDIDPDDISKNRDVRAFHRVTHSRYENSTPAW 692
>gi|115453447|ref|NP_001050324.1| Os03g0403400 [Oryza sativa Japonica Group]
gi|29788823|gb|AAP03369.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108708691|gb|ABF96486.1| WD40-like Beta Propeller Repeat family protein, expressed [Oryza
sativa Japonica Group]
gi|113548795|dbj|BAF12238.1| Os03g0403400 [Oryza sativa Japonica Group]
Length = 744
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 194/579 (33%), Positives = 277/579 (47%), Gaps = 89/579 (15%)
Query: 92 FHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSG 151
+ +R A ++ L ++S E W+ +Y T+L+ + RLTP G D SP+VS SG
Sbjct: 140 YRERGRAVDHTLVYVSTREPVAARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSG 199
Query: 152 KFIAVASYESRP--WPGEFHELNTDIVVFQESDP--NKRVIVCERGGWPTWSGDSTIYFH 207
K +AVAS++ +P W GE +L TDI V P + V + GWPTW D I+FH
Sbjct: 200 KRVAVASWQGKPGLWDGEIEDLRTDIYVMNVHKPPLGRTGPVVKNAGWPTWGSDDVIFFH 259
Query: 208 RQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNR- 266
R+ W +FR S E RVTP TPAA + K RRK++
Sbjct: 260 RRVGTT-WGVFRFSMSTGEE--------ARVTPEEFDAVTPAAISETKVAVATIRRKSQF 310
Query: 267 -------NFRHIEIYDLT-----------LNPNFHHYNPFVSANSEFIGYHRFRGESTE- 307
+RHIEI+D+ P H+NPFV IGYHR + E
Sbjct: 311 SDVRVEEQYRHIEIFDVASPEQPVKITQKTRPKTDHFNPFVLDGGSRIGYHRCKSEQLHQ 370
Query: 308 -----GQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD 362
G S + + SP K++ + R++G P+ S DG + F D E A + +A S
Sbjct: 371 NNGGGGSSVANNFHKLQSPHKDVGLFRVSGVCPTISKDGSKLAFV-DNEFKA-VWLADSH 428
Query: 363 GSKRWTLIKD-RTAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR 420
G + K + F +W+ T +Y GP F +++ +QI + D S R
Sbjct: 429 GLRVVYEKKGPNSVFSTAWNQNTALDTLYVCVGPSFSADKP-LQIYAIH---DVSALGGR 484
Query: 421 EEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR------SGHKNLFVL-DAVNGEF- 472
++ + LT + NNAFPS SPDG LVFRS R HKNL+V+ DA GEF
Sbjct: 485 QQ-----RRLTAGAS-NNAFPSSSPDGGRLVFRSTRDGGGGGRRHKNLYVMEDAAVGEFG 538
Query: 473 NGDIRQLTDGPWIDTMPSWSPK--GDLIAFSSNRHNPDNVEA---------FSLYVIKP- 520
+ +LT G W DT SWSP+ D I FSS R P A F++++++
Sbjct: 539 TSKVTRLTSGAWTDTHCSWSPREGSDWIVFSSTRDKPAAAPADDNGLDPGYFAVFLVRAS 598
Query: 521 DGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP---NQFQ 577
D + + R+ + +G V NH FS DG + TA+L AV A+P+S P + +
Sbjct: 599 DPTVVVRVVRSADSVAGHV-----NHPVFSPDGRSIAVTADLAAVSADPISLPLFLHSVR 653
Query: 578 PYGDLYVVKLDGSGL---------RRLTWNGYENGTPAW 607
PYGD++ V +D + R+T + YEN TPAW
Sbjct: 654 PYGDIFTVDIDPDDISKNRDVRAFHRVTHSRYENSTPAW 692
>gi|125586595|gb|EAZ27259.1| hypothetical protein OsJ_11196 [Oryza sativa Japonica Group]
Length = 744
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 192/579 (33%), Positives = 277/579 (47%), Gaps = 89/579 (15%)
Query: 92 FHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSG 151
+ +R A ++ L ++S E W+ +Y T+L+ + RLTP G D SP+VS SG
Sbjct: 140 YRERGRAVDHTLVYVSTREPVAARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSG 199
Query: 152 KFIAVASYESRP--WPGEFHELNTDIVVFQESDP--NKRVIVCERGGWPTWSGDSTIYFH 207
K +AVAS++ +P W GE +L TDI V P + V + GWPTW D I+FH
Sbjct: 200 KRVAVASWQGKPGLWDGEIEDLRTDIYVMNVHKPPLGRTGPVVKNAGWPTWGSDDVIFFH 259
Query: 208 RQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNR- 266
R+ W +FR S E RVTP TPAA + K RRK++
Sbjct: 260 RRVGTT-WGVFRFSMSTGEE--------ARVTPEEFDAVTPAAISETKVAVATIRRKSQF 310
Query: 267 -------NFRHIEIYDLT-----------LNPNFHHYNPFVSANSEFIGYHRFRGES--- 305
+RHIEI+D+ P H+NPFV IG R S
Sbjct: 311 SDVRVEEQYRHIEIFDVASPEQPVKITQKTRPKTDHFNPFVLDGGSRIGSTGARASSFTR 370
Query: 306 --TEGQSTIP-HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD 362
E +S++ + + SP K++ + R++G P+ S DG + F D E A + +A S
Sbjct: 371 ITVEARSSVANNFHKLQSPHKDVGLFRVSGVCPTISKDGSKLAFV-DNEFKA-VWLADSH 428
Query: 363 GSKRWTLIKD-RTAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR 420
G + K + F +W+ T +Y GP F +++ +QI + D S R
Sbjct: 429 GLRVVYEKKGPNSVFSTAWNQNTALDTLYVCVGPSFSADKP-LQIYAIH---DVSALGGR 484
Query: 421 EEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR------SGHKNLFVL-DAVNGEF- 472
++ + LT + NNAFPS SPDG LVFRS R HKNL+V+ DA GEF
Sbjct: 485 QQ-----RRLTAGAS-NNAFPSSSPDGGRLVFRSTRDGGGGGRRHKNLYVMEDAAVGEFG 538
Query: 473 NGDIRQLTDGPWIDTMPSWSPK--GDLIAFSSNRHNPDNVEA---------FSLYVIKP- 520
+ +LT G W DT SWSP+ D I FSS R P A F++++++
Sbjct: 539 TSKVTRLTSGAWTDTHCSWSPREGSDWIVFSSTRDKPAAAPADDNGLDPGYFAVFLVRAS 598
Query: 521 DGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP---NQFQ 577
D + + R+ + +G V NH FS DG + TA+L AV A+P+S P + +
Sbjct: 599 DPTVVVRVVRSADSVAGHV-----NHPVFSPDGRSIAVTADLAAVSADPISLPLFLHSVR 653
Query: 578 PYGDLYVVKLDGSGL---------RRLTWNGYENGTPAW 607
PYGD++ V +D + R+T + YEN TPAW
Sbjct: 654 PYGDIFTVDIDPDDISKNRDVRAFHRVTHSRYENSTPAW 692
>gi|326515644|dbj|BAK07068.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 733
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 180/576 (31%), Positives = 265/576 (46%), Gaps = 94/576 (16%)
Query: 101 NKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYE 160
+ L ++S E + W+ +Y T L K RLTP D SP+VS SGK +AVA++
Sbjct: 153 HSLVYVSTKEPAKKRRAPWTVVYKTSLADGKTERLTPPDQYDLSPAVSPSGKMVAVANFR 212
Query: 161 SRPWPGEFHELNTDIVVFQ----ESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGW-- 214
W GE L TDIVV +R I+ GGWPTW D+ I+FHR D
Sbjct: 213 WNQWTGEIEHLKTDIVVMNVDRWAQGGLRRKILIRDGGWPTWGSDNIIFFHRGVDKMLPS 272
Query: 215 ------WSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRN- 267
W +FR RVTP G TPAA ++ + R+K+
Sbjct: 273 GMVQTDWGVFRYDMTTKETI--------RVTPLGFDAVTPAAVNETTVVVATIRQKSEKT 324
Query: 268 --------FRHIEIYDLTL-----------NPNFHHYNPFVSANSEFIGYHRFRG----E 304
+RHIEI+D+T P HYNPF+ +GYHR R E
Sbjct: 325 GAHREVAEYRHIEIFDVTAPYKPVQITIKSRPEVDHYNPFILHGGNCVGYHRCRTDNLLE 384
Query: 305 STEGQSTIPHLEPVASPVKE--LRMLRLNGSFPSFSPDGGLIVF-NHDFELNAGIKIAKS 361
+ + + SP + + R++G FP+ S DG + F +++F+ + +A S
Sbjct: 385 NNGNDGVQRNFHKLQSPPSHAGVGLFRVSGVFPTTSKDGSKLAFVDNNFK---AVWLADS 441
Query: 362 DGSKR-WTLIKDRTAFYNSWSPTE-KHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNN 419
G +R + + + F SW+ + + +Y GP F + + ++I +S P
Sbjct: 442 HGIRRVYEMRGTNSIFSTSWNKNQDRDTLYVCIGPSFSAGKP-LEIYAISNVSGPRGGRK 500
Query: 420 REEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG----HKNLFVL-DAVNGEFN- 473
E + + NNAFPS +PDG VFRS R G HKNL+++ DA GEF+
Sbjct: 501 VERL--------TDGHFNNAFPSSNPDGTKFVFRSTRDGGAELHKNLYIMEDAEVGEFSE 552
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVE--------AFSLY-VIKPDGSG 524
G +R+LT+GPW DT SWSPK D I FSS+R +F+++ V+ D +
Sbjct: 553 GTVRRLTNGPWTDTHCSWSPKNDWIVFSSSRDKAAGAPKRDILDPGSFAVFMVMASDPTV 612
Query: 525 LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP---NQFQPYGD 581
+ R+ + +G + H FS D ++ A+L AV EP+S P + +PYGD
Sbjct: 613 VVRVMKSSDSVAG-----HVTHPMFSPDMRSIVVAADLAAVSTEPISMPQFLHSVRPYGD 667
Query: 582 LYVVKL----------DGSGLRRLTWNGYENGTPAW 607
++ V L D R+T + YE TP W
Sbjct: 668 IFSVDLRDTDDMSKNKDIKEFHRITHSRYEYATPEW 703
>gi|242094216|ref|XP_002437598.1| hypothetical protein SORBIDRAFT_10g030220 [Sorghum bicolor]
gi|241915821|gb|EER88965.1| hypothetical protein SORBIDRAFT_10g030220 [Sorghum bicolor]
Length = 769
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 186/597 (31%), Positives = 275/597 (46%), Gaps = 118/597 (19%)
Query: 103 LFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESR 162
+ ++S + ++ W+ +Y T+L+ + RLTP G D SP+VS SGK +AVA +
Sbjct: 146 IVYVSTKKPVEKRRTPWTVVYRTNLRTGETVRLTPDGEYDLSPAVSPSGKRVAVAKFSDN 205
Query: 163 PWPGEFHELNTDIVVF-QESDPNK---------RVIVCERGGWPTWSGDSTIYFHRQADD 212
W GE L TDIVV D N R + + GWP+W D+ I+FHR D
Sbjct: 206 KWSGEIEHLKTDIVVMIMNVDRNAQGGGKPLDDRAVCIQDAGWPSWGSDNVIFFHRAVDK 265
Query: 213 G----------WWSIFRVSFPENLEFLGFPIAPTR---VTPPGVHCFTPAAFHDGKRLAV 259
W ++R + IA R VTP ++ TPAA + K +AV
Sbjct: 266 KDDPDSDRLTPHWGVYR-----------YDIAAGRTEPVTPGNIYAMTPAAISETK-VAV 313
Query: 260 ATRRKNRN----------FRHIEIYDL---------------TLNPNFHHYNPFVSANSE 294
AT R+ N FRHIEI+D+ + P HYNPFV
Sbjct: 314 ATIRQRTNQMGGARDADMFRHIEIFDVPGPGGTQQPSVKITQVVWPKADHYNPFVLHGGA 373
Query: 295 FIGYHRFRGE---STEGQSTIPH-LEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDF 350
IGYHR E G+S + + + S K++ + R++G FP+ S DG + F D
Sbjct: 374 CIGYHRATTERLLEETGKSNVARSFDKLQSVHKDVDVFRVSGVFPTVSSDGSKLAFV-DN 432
Query: 351 ELNAGIKIAKSDGSKR--WTLIKDRTAFYNSWS-PTEKHVIYTSTGPIFQSERATVQIAR 407
E A + +A R W + + F +W+ +K V+Y GP F ++ + ++I
Sbjct: 433 EFKA-VWVADEPRGLRVVWEWRRPNSVFSTAWNHDPDKDVLYVCVGPAFSAD-SRLEIHA 490
Query: 408 VSFQLDPSDDNNREEIPCDVKILTKEETG--NNAFPSCSPDGKFLVFRSGRSG------- 458
+ + S D ++ + L K G NNAFPS +P G +VFRS +
Sbjct: 491 I---FNASGDESQRQ-------LRKLTAGGFNNAFPSSNPAGTKIVFRSTKDAPPPPPGG 540
Query: 459 --HKNLFVL-DAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA--- 512
KNL+++ DA+ GE G + +LTDG W DT WSP GD I FSS+RH PD
Sbjct: 541 FRQKNLYIMEDAMEGESAG-VTRLTDGDWTDTHCQWSPSGDWIVFSSSRHKPDGAPKTDN 599
Query: 513 ------FSLYVIKPDG-SGLRRIHVAG---PEGSGDVDRERINHVCFSADGEWLLFTANL 562
F +Y++ P + R+ + P + +NH FS DG ++ TA+L
Sbjct: 600 FLDPGYFGVYLVNPASPKAVVRVMTSALPPPVPTNVAGLGHVNHPMFSPDGRSIVVTADL 659
Query: 563 GAVMAEPVSWP---NQFQPYGDLYVVKLDGSGL---------RRLTWNGYENGTPAW 607
AV EP+S P + +PYGD++ +D + R+T + YE TP W
Sbjct: 660 AAVSVEPISMPMFLHSVRPYGDIFSFDIDPVDMDKNKDIQKFHRVTHSRYEYATPVW 716
>gi|115488384|ref|NP_001066679.1| Os12g0431300 [Oryza sativa Japonica Group]
gi|77554873|gb|ABA97669.1| expressed protein [Oryza sativa Japonica Group]
gi|113649186|dbj|BAF29698.1| Os12g0431300 [Oryza sativa Japonica Group]
gi|125536449|gb|EAY82937.1| hypothetical protein OsI_38155 [Oryza sativa Indica Group]
gi|125579178|gb|EAZ20324.1| hypothetical protein OsJ_35933 [Oryza sativa Japonica Group]
Length = 777
Score = 228 bits (581), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 195/595 (32%), Positives = 268/595 (45%), Gaps = 117/595 (19%)
Query: 103 LFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESR 162
L ++S W+ +Y TDL K RLTP G D SP+VS SGK +AVA+++
Sbjct: 157 LVYVSTKAPVKARRTPWTVVYRTDLADGKTERLTPLGQYDLSPAVSPSGKMVAVANFQQN 216
Query: 163 PWPGEFHELNTDIVVF----QESDPNKRVIVCERGGWPTWSGDSTIYFHRQAD------D 212
W GE L TDIVV + + R ++ + GGWPTW D+ I+FHR D
Sbjct: 217 RWNGEIENLKTDIVVMNVDKRAQGRSDRKVLIKDGGWPTWGSDNVIFFHRGFDTTPPSNT 276
Query: 213 GWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNR------ 266
W +FR E RVT + TPAA + + R K++
Sbjct: 277 ARWGVFRFDIAAGKE--------ERVTDESIDAMTPAAISETQVAVATVREKSKQVLMKV 328
Query: 267 -----NFRHIEIYDLT----------LNPNFHHYNPFVSANSEFIGYHRFRGE---STEG 308
+RHIEI+D P HYNPFV +GYHR R + +
Sbjct: 329 ERVVTQYRHIEIFDTASKTSVPITQKTRPEGDHYNPFVLDGGTRVGYHRCRTDKLLKVQN 388
Query: 309 QSTIP------HLEPVASPVK--ELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAK 360
Q + P + V P ++ + R+ G FPS S +G + F D E A +
Sbjct: 389 QKSTPTTSIQRRFDKVQPPESHADVGLFRVTGVFPSVSKNGKKLAFV-DNEFKA---VWL 444
Query: 361 SDGSKRWTLIKDR---TAFYNSWSPTEK-HVIYTSTGPIFQSERATVQIARVSFQLDPSD 416
+DG + K R + F SW+ + +Y GP F ++ VQI R+ + D
Sbjct: 445 ADGRGLRVVYKVRATKSVFSTSWNQNDDLDTLYVCEGPAFSIDKP-VQIMRIP-NVSRED 502
Query: 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRS-------GHKNLFVLDAVN 469
N E P LT EE N AFPS + +G LVFRS R+ HKNL+++DA
Sbjct: 503 YENMETFP-----LTDEEY-NCAFPSTNAEGTKLVFRSSRNRVAGGERQHKNLYIIDAEK 556
Query: 470 GEFNGDIRQLTDGPWIDTMPSWSPK--GDLIAFSSN-RHNPDNVEA-------------- 512
GE G + LTDGPW DT SWSP+ D I FSS R D V+
Sbjct: 557 GEAAG-VVPLTDGPWTDTHCSWSPREGCDWIVFSSTGRPEKDIVKGKDEPEKDHGLDPGY 615
Query: 513 FSLYVI--KPDGSG-----LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV 565
F++Y++ K G +R IH A P +G INH FS D + ++F A+L AV
Sbjct: 616 FAVYLVNAKDIKKGEVPVPVRVIHSA-PTIAG-----HINHPVFSPDMKSIVFAADLAAV 669
Query: 566 MAEPVSWP---NQFQPYGDLYVVKL----------DGSGLRRLTWNGYENGTPAW 607
A+P+S P + +PYGD++ V L D R+T + YE TP W
Sbjct: 670 SADPISMPHFTHSVRPYGDIFSVNLRDTTDMAKNRDIQEFHRITHSRYEYSTPTW 724
>gi|357138465|ref|XP_003570812.1| PREDICTED: uncharacterized protein LOC100837266 [Brachypodium
distachyon]
Length = 728
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 205/684 (29%), Positives = 311/684 (45%), Gaps = 134/684 (19%)
Query: 2 EPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFV--------- 52
EP G IVF+ FD+FS SP + + E LTDG S N+N Q +
Sbjct: 3 EPGGRIVFSRTNGTLVSFDIFS--SPLSPSSTY-ELPLTDGVSYNYNGQAIPPAALKTLL 59
Query: 53 -----------------DGQDQTIAFISER-SGSPRIYQTRPGSSKTELLPSIPCS-LF- 92
G + F+SER +G +Y ++ + +L I + +F
Sbjct: 60 KNPKLADKADANDADIDAGNVSGLIFVSERDNGLETLYIALHFNAGSNILKVIALADIFG 119
Query: 93 -HDRPVAR------------------NNKLFFISAHEQPDQIFKSWSALYSTDLKASKFT 133
D R ++ L ++S E + W+ +Y T+L K
Sbjct: 120 AADFSGVRLEDSGCIGGGYSVGCRTVDHCLIYVSTKEAAQERRSPWTVVYKTNLTTGKTE 179
Query: 134 RLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNK--RVIVCE 191
RLTP GV D SP+VS SG +AVAS+ES+ W GE L TDI V + R ++ +
Sbjct: 180 RLTPQGVFDLSPAVSPSGMMVAVASFESKSWNGELENLKTDIYVMNVDSEGQLGRKLLIK 239
Query: 192 RGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIA---PTRVTPPGVHCFTP 248
GGWP+W D+ I+FHR + S R+ + I+ +VTP + TP
Sbjct: 240 NGGWPSWGSDNIIFFHRGTEKTLPSTSRMVVETAWGVFRYNISTQETVQVTPEELDAMTP 299
Query: 249 AAFHDGKRLAVATRRKN--RNFRHIEIYDLT----------LNPNFHHYNPFVSANSEFI 296
AA + K +AVAT R+N +RHIEI+D+ +P HYNPF+ I
Sbjct: 300 AAISETK-VAVATIRQNVPVQYRHIEIFDMNAASPVQITQKTSPECDHYNPFMLDGGGRI 358
Query: 297 GYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGI 356
GYHR R ++ LE SP K++ + R +G FP+ S DG + F D + +
Sbjct: 359 GYHRSR--TSRYHDKFYKLE---SPSKDVGLYRASGMFPAISKDGSKLAFVDD--KSKVV 411
Query: 357 KIAKSDGSKRWTLIKDRTAFYNSWSP-----TEKHVIYTSTGPIFQSER--ATVQIARVS 409
+A S G + ++ ++T + +SP ++K ++Y GP +S R I +S
Sbjct: 412 WLADSQGLR---IVYEQTGSDSVFSPVWNQDSDKDILYICVGPSLESHRPLEIYSITNIS 468
Query: 410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSG-----------RSG 458
S D +E V+ LT + NNAFPS SPDG LVF+S R
Sbjct: 469 -----SSDGGQE-----VRQLTCGKF-NNAFPSSSPDGGKLVFQSTRDFWPKKAEDRRKK 517
Query: 459 HKNL-FVLDAVNGEFNGD--IRQLTDGPWIDTMPSWSPKGDLIAFSSNR------HNPDN 509
H+NL +L+A GE + + + +LT G W DT WSP+GD I F S R ++ D
Sbjct: 518 HRNLHIMLNAAAGELDENCWVTRLTKGSWTDTQCQWSPRGDWIVFLSTRDRQLTSNHADE 577
Query: 510 VE----AFSLYVIKP-DGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA 564
+E S++++K D + RI +G + FS DG + TA+ A
Sbjct: 578 LEYPVGYLSVFLVKAYDPMVVVRIMDSGADP------------VFSPDGRSIAVTADFSA 625
Query: 565 VMAEPVSWPNQFQPYGDLYVVKLD 588
V +P+S P + ++++V ++
Sbjct: 626 VSVDPISLPKLARLCSNIFLVDIN 649
>gi|224161605|ref|XP_002338348.1| predicted protein [Populus trichocarpa]
gi|222872001|gb|EEF09132.1| predicted protein [Populus trichocarpa]
Length = 193
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 99/148 (66%), Positives = 123/148 (83%), Gaps = 1/148 (0%)
Query: 130 SKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIV 189
SKF RLTP+G VDYSP++S S FIAVASY SR W GEFH+++TDIVVF+ES+P+ R+++
Sbjct: 27 SKFIRLTPHGAVDYSPAISLSANFIAVASYGSRSWGGEFHDMHTDIVVFKESNPSTRIVL 86
Query: 190 CERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIA-PTRVTPPGVHCFTP 248
+ GGW TW GDS+IYFHRQADDGWWS+F+V+ PEN E P A P RVTPPGVHCFTP
Sbjct: 87 SDHGGWLTWCGDSSIYFHRQADDGWWSVFQVTLPENFEDSELPKASPVRVTPPGVHCFTP 146
Query: 249 AAFHDGKRLAVATRRKNRNFRHIEIYDL 276
AAF DGKR+AVATRRK +++ H+EI+D+
Sbjct: 147 AAFQDGKRIAVATRRKGKSYGHVEIFDV 174
>gi|357151442|ref|XP_003575792.1| PREDICTED: uncharacterized protein LOC100821131 [Brachypodium
distachyon]
Length = 730
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 176/579 (30%), Positives = 266/579 (45%), Gaps = 99/579 (17%)
Query: 98 ARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVA 157
A + L ++S E W+A+Y T L+ RLTP D +P+VS SGK +AVA
Sbjct: 149 AVGHSLVYVSTKEPAKARRTPWTAVYKTSLEDGSTERLTPQYQYDINPAVSPSGKRVAVA 208
Query: 158 SYESRPWPGEFHELNTDIVVF----QESDPNKRVIVCERGGWPTWSGDSTIYFHRQA--- 210
++ W GE +NTDIVV Q +R +V + GGWPTW D+ I+FHR
Sbjct: 209 NFRFNQWTGEIDRINTDIVVMNVDRQAQGGLRRRVVIKDGGWPTWGSDNVIFFHRGKFVP 268
Query: 211 --DDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRR----- 263
W +FR N +TP + TPAA + K ATR
Sbjct: 269 GRRQPCWQVFRYDLTTN--------KIDAMTPENIDAMTPAAIDENKVAVAATRAPFGLQ 320
Query: 264 ----KNR----NFRHIEIYD--------LTLNPNFHHYNPFV---SANSEFIGYHRFRGE 304
+ R FR IEIY+ + + HYNPF+ +++ +G+HR R
Sbjct: 321 AVAPEQRTAVGQFRQIEIYEAGKPADPVVITSNKTDHYNPFLLQRGSSNTSVGFHRCRDG 380
Query: 305 STEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVF-NHDFELNAGIKIAKSDG 363
E + ++ P +++ + R G FP+F+ G + + ++DF + +A
Sbjct: 381 DAEKKFSMLKSPPTH---QDVALYRGAGVFPTFTNKGSELAYVDNDFRT---VYVADGGV 434
Query: 364 SKRWTLIKDRTAFYNSWSPTEKH-VIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREE 422
R + + S + +KH +Y G F +QI + D +D N++
Sbjct: 435 EPRAVYKHENSNKILSVTWNQKHDTLYCCIGTAFTG--GEIQIWAIYNVCD--EDTNKQS 490
Query: 423 IPCDVKILTKEETG-NNAFPSCSPDGKFLVFRSG--RSG----HKNLFVL-DAVNGEFN- 473
K LT + NNAFPS + +G LVFRS RSG KNL+++ DA G+ +
Sbjct: 491 W----KQLTDDTKKYNNAFPSSNKEGDKLVFRSSCDRSGGDNKFKNLYIMEDATEGDSSA 546
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH------NPDNVEA--FSLYVIK-PDGSG 524
G + QLT G W DT WSP D I FSS+R +P ++A FS++++ D S
Sbjct: 547 GKVTQLTKGDWTDTHCCWSPTDDWIVFSSSRDRAPPGTDPAILDAGCFSIFMVNYKDPSV 606
Query: 525 LRRIHVAGPEGSGDVDRERINHVC---FSADGEWLLFTANLGAVMAEPVSWP---NQFQP 578
+ R+ + D HVC FS D + ++ T+++ AV A+P S P + +P
Sbjct: 607 VVRVMHS--------DMSLAGHVCHPVFSPDRKSIVVTSDVAAVSADPASLPIFIHSVRP 658
Query: 579 YGDLYVVKL----------DGSGLRRLTWNGYENGTPAW 607
YGD++ +KL D R+T + YEN TP W
Sbjct: 659 YGDIFTIKLRDPDCLEKNGDIVEFDRITHSRYENSTPTW 697
>gi|297722933|ref|NP_001173830.1| Os04g0278101 [Oryza sativa Japonica Group]
gi|255675272|dbj|BAH92558.1| Os04g0278101 [Oryza sativa Japonica Group]
Length = 378
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 137/388 (35%), Positives = 193/388 (49%), Gaps = 89/388 (22%)
Query: 237 RVTPPGVHCFTPAAFHDGKRL-AVATRRKNRNFRHIEIYDLT------------LNPNFH 283
R+TP G H FTPAA L AVATR ++RHIE+ D++ + P H
Sbjct: 23 RITPRGFHAFTPAASPGAPGLVAVATRLAGSDYRHIEVIDMSDDKNAYFEVTRPVAPRVH 82
Query: 284 HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPV--KELRMLRLNGSFPSFSPDG 341
+NPF+S + +GYHR G G S + LE + SPV + R++GSFP
Sbjct: 83 RFNPFISLDGARVGYHRCWGRGN-GDSPL-LLENIKSPVPADTFSLFRIDGSFPPS---- 136
Query: 342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERA 401
+ ++S G + + L+++R E+ I+TS GP F E
Sbjct: 137 -----------RTTARRSRSSGCRGY-LLRERLPDVVGLE-EERRDIHTSIGPDFAIEST 183
Query: 402 TVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKN 461
V + +S DD+++ +K LT + NNAFPS PDGK+L
Sbjct: 184 EVDVVAISL----GDDDDKT---ISMKKLTVGDE-NNAFPSPPPDGKWL----------- 224
Query: 462 LFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD 521
+GE G IR+LT+GPW DTM +WSP + IAF+S+RH P
Sbjct: 225 -------DGEAGG-IRRLTEGPWSDTMCNWSPDDEWIAFASDRHAP-------------- 262
Query: 522 GSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGD 581
GSG I V P G+G +D + L+FT++ AV AEPVS P+ +QPYG+
Sbjct: 263 GSGSFAIMVH-PNGTG-------------SDSKSLVFTSDYAAVSAEPVSNPHHYQPYGE 308
Query: 582 LYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+Y V +DGS +RRLT N +E+GTP+W P
Sbjct: 309 IYTVDIDGSNIRRLTHNSFEDGTPSWTP 336
>gi|49234796|gb|AAT57937.1| putative protein [Gossypium hirsutum]
Length = 109
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/108 (70%), Positives = 87/108 (80%), Gaps = 1/108 (0%)
Query: 145 PSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTI 204
P SY + +ASY SRPW G+FHEL TDIVVF SDPN R++VC+RGGWPTWSGDSTI
Sbjct: 2 PLASYGSRLGPLASYGSRPWEGDFHELKTDIVVFPTSDPNNRLVVCKRGGWPTWSGDSTI 61
Query: 205 YFHRQADDGWWSIFRVSFPEN-LEFLGFPIAPTRVTPPGVHCFTPAAF 251
+FHRQ DDGWWSIFRV FPEN LEF FP+ P R+TPPG+HCF+PA F
Sbjct: 62 FFHRQTDDGWWSIFRVQFPENPLEFSEFPVLPLRITPPGLHCFSPALF 109
>gi|49234794|gb|AAT57936.1| putative protein [Gossypium hirsutum]
Length = 99
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/97 (75%), Positives = 83/97 (85%), Gaps = 1/97 (1%)
Query: 156 VASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWW 215
+ASY SRPW G+FHEL TDIVVF SDPN R++VC+RGGWPTWSGDSTI+FHRQ DDGWW
Sbjct: 3 LASYGSRPWEGDFHELKTDIVVFPTSDPNNRLVVCKRGGWPTWSGDSTIFFHRQTDDGWW 62
Query: 216 SIFRVSFPEN-LEFLGFPIAPTRVTPPGVHCFTPAAF 251
SIFRV FPEN LEF FP+ P R+TPPG+HCF+PA F
Sbjct: 63 SIFRVQFPENPLEFSEFPVLPLRITPPGLHCFSPALF 99
>gi|49234792|gb|AAT57935.1| putative protein [Gossypium hirsutum]
Length = 99
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 72/97 (74%), Positives = 82/97 (84%), Gaps = 1/97 (1%)
Query: 156 VASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWW 215
+ASY S PW G+FHEL TDIVVF SDPN R++VC+RGGWPTWSGDSTI+FHRQ DDGWW
Sbjct: 3 LASYGSSPWEGDFHELKTDIVVFPTSDPNNRLVVCKRGGWPTWSGDSTIFFHRQTDDGWW 62
Query: 216 SIFRVSFPEN-LEFLGFPIAPTRVTPPGVHCFTPAAF 251
SIFRV FPEN LEF FP+ P R+TPPG+HCF+PA F
Sbjct: 63 SIFRVQFPENPLEFSEFPVLPLRITPPGLHCFSPALF 99
>gi|326522959|dbj|BAJ88525.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 555
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 122/397 (30%), Positives = 181/397 (45%), Gaps = 60/397 (15%)
Query: 103 LFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESR 162
L ++S E + W+ +Y T+L K RLTP G D SP+VS SGK +AVA++
Sbjct: 161 LVYVSTKEPVTRRRTPWTVVYRTNLGDGKTERLTPPGQYDVSPAVSPSGKMVAVANFRGN 220
Query: 163 PWPGEFHELNTDIVVFQESDPNK----RVIVCERGGWPTWSGDSTIYFHRQADDG--WWS 216
W GE LNTDIV+ + R I+ GGWPTW D+ I+FHR + W+
Sbjct: 221 RWTGEIERLNTDIVIMNVDKAAQGGRGRKILIRDGGWPTWGSDNVIFFHRGTGESPTNWA 280
Query: 217 IFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRK------------ 264
+FR +VTP + TPAA + R+AVAT R+
Sbjct: 281 VFRYDIATK--------KTVQVTPVNIDAMTPAAISE-TRVAVATIRQKSMQAAMTTPRE 331
Query: 265 NRNFRHIEIYDLT-----------LNPNFHHYNPFVSANSEFIGYHRFRGE----STEGQ 309
+ +RHIEI+D+ + P HYNPFV IGYHR R +
Sbjct: 332 DAEYRHIEIFDVASPEPPVQISQKIRPKADHYNPFVVDGGSRIGYHRVRTDDLLIGNNVA 391
Query: 310 STIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTL 369
+ + + SP ++ + R+ G FP+ S DG + F D E A + +A + G + +
Sbjct: 392 APTKSFDKIHSPHIDVGLFRVTGVFPTISKDGSKLAF-VDNEFKA-VWLADTQGLR--VV 447
Query: 370 IKDR---TAFYNSWSPT-EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPC 425
+ R + F +W+ +K +Y GP F + + ++I +S PS
Sbjct: 448 YEKRGPNSVFSTAWNQNPDKDTLYVCVGPSFSASKP-LEIYAISNASGPSAGRK------ 500
Query: 426 DVKILTKEETGNNAFPSCSPDGKFLVF-RSGRSGHKN 461
V+ LT NNAFPS + G L F R G + ++
Sbjct: 501 -VQRLTAGNF-NNAFPSSNAQGDKLCFDRQGMAAKRS 535
>gi|125547561|gb|EAY93383.1| hypothetical protein OsI_15178 [Oryza sativa Indica Group]
Length = 470
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/155 (49%), Positives = 111/155 (71%), Gaps = 10/155 (6%)
Query: 455 GRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFS 514
G GHKNL+++DA +GE G IR+LT+GPW DTM +WSP + IAF+S+RH P + +F+
Sbjct: 284 GCRGHKNLYIMDAKDGEAGG-IRRLTEGPWSDTMCNWSPHDEWIAFASDRHAPGS-GSFA 341
Query: 515 LYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPN 574
+ ++ P+G+GLRR+ +G D R NH FS+D + L+FT++ AV AEPVS P+
Sbjct: 342 I-MVHPNGTGLRRVVHSG-------DGGRTNHPWFSSDFKSLVFTSDYAAVSAEPVSNPH 393
Query: 575 QFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+QPYG++Y V +DGS +RRLT N +E+GTP+W P
Sbjct: 394 HYQPYGEIYTVDIDGSNIRRLTHNSFEDGTPSWTP 428
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 117/293 (39%), Gaps = 57/293 (19%)
Query: 237 RVTPPGVHCFTPAAFHDGKRL-AVATRRKNRNFRHIEIYDLT------------LNPNFH 283
R+TP G H FTPAA L AVATR ++RHIE+ D++ + P H
Sbjct: 157 RITPRGFHAFTPAASPGAPGLVAVATRLAGSDYRHIEVIDMSDDKNAYFEVTRPVAPRVH 216
Query: 284 HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS--PVKELRMLRLNGSFP------ 335
+NPF+S + +GYH+ G + LE + S P + R++GSFP
Sbjct: 217 RFNPFISLDGARVGYHQCWGRGNGDSPLL--LENIKSPGPADTFSLFRIDGSFPPSRTTA 274
Query: 336 -SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGP 394
G H K ++ G +R T N WSP ++ +
Sbjct: 275 RRSRSSGCRGCRGHKNLYIMDAKDGEAGGIRRLTEGPWSDTMCN-WSPHDEWI------- 326
Query: 395 IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRS 454
F S+R + + P+ R +++ + G P S D K LVF S
Sbjct: 327 AFASDRHAPGSGSFAIMVHPNGTGLR-------RVVHSGDGGRTNHPWFSSDFKSLVFTS 379
Query: 455 GRSG--------------HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
+ + ++ +D ++G +IR+LT + D PSW+P
Sbjct: 380 DYAAVSAEPVSNPHHYQPYGEIYTVD-IDGS---NIRRLTHNSFEDGTPSWTP 428
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 13/163 (7%)
Query: 5 GTIVFTTVGRPYYGFDVFSIK-SPFVNAPKFHEHRLTDGTSINFNAQFV-DGQDQTIAFI 62
GTIVFTT+GR Y F +FS+ SP + P E LTDG S+N+N F +I F+
Sbjct: 24 GTIVFTTLGRSRYEFSIFSLPLSPSPHNPAT-ELYLTDGVSVNYNGNFAPTSHSDSILFV 82
Query: 63 SERSGSPRIYQTRPGSSKTELL------PSIPCSLFHDRPVARNNKLFFISAHEQPDQIF 116
S+R+GS +Y + SS+ E L P +P + R R++ + P
Sbjct: 83 SKRNGSLNLYLSPVPSSRHEALEAAALSPLLPGNPSRSRTGYRSHPTAPTLSTSPPPSPL 142
Query: 117 KSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGK-FIAVAS 158
++ +A ++A+ R+TP G ++P+ S +AVA+
Sbjct: 143 RNRAA---AGVEAASVERITPRGFHAFTPAASPGAPGLVAVAT 182
>gi|376337998|gb|AFB33555.1| hypothetical protein 2_7121_02, partial [Pinus mugo]
Length = 152
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 103/162 (63%), Gaps = 10/162 (6%)
Query: 337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIF 396
FSP+G LI + + E N G+ + + DGS R I AF +W ++ V+YTS GP F
Sbjct: 1 FSPNGSLIAYIPNIE-NTGVYVMRLDGSGR-RKIFSGAAFGTAWD-WKRGVVYTSAGPGF 57
Query: 397 QSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR 456
+SER TV I + +D E KILTKE+ NNAFPS SPDGK++VFRSGR
Sbjct: 58 ESERTTVDIVAIY----NADKEGISESEISYKILTKED--NNAFPSPSPDGKYVVFRSGR 111
Query: 457 SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
+GHKNL+++DA GE G + QLT+GPW DTM SWSP G+ I
Sbjct: 112 TGHKNLYIMDAEEGE-EGGLWQLTEGPWTDTMCSWSPDGEWI 152
>gi|383136411|gb|AFG49274.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
Length = 152
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 103/162 (63%), Gaps = 10/162 (6%)
Query: 337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIF 396
FSP+G LI + + E N G+ + + DGS R I AF +W +K V+YTS GP F
Sbjct: 1 FSPNGSLIAYIPNIE-NTGVYVMRLDGSGR-RKIFSGAAFGTAWD-WKKGVVYTSAGPGF 57
Query: 397 QSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR 456
++ER TV I + +D E KILTKE+ NNAFPS SPDGK++VFRSGR
Sbjct: 58 ETERTTVDIVAIY----NADKEGISESEISYKILTKED--NNAFPSPSPDGKYVVFRSGR 111
Query: 457 SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
+GHKNL+++DA GE G + QLT+GPW DTM +WSP G+ I
Sbjct: 112 TGHKNLYIMDAEEGE-EGGLWQLTEGPWTDTMCTWSPDGEWI 152
>gi|361068095|gb|AEW08359.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136400|gb|AFG49263.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136401|gb|AFG49264.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136402|gb|AFG49265.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136403|gb|AFG49266.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136404|gb|AFG49267.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136405|gb|AFG49268.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136406|gb|AFG49269.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136407|gb|AFG49270.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136408|gb|AFG49271.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136409|gb|AFG49272.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136410|gb|AFG49273.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136412|gb|AFG49275.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136413|gb|AFG49276.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136414|gb|AFG49277.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136415|gb|AFG49278.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136416|gb|AFG49279.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|383136417|gb|AFG49280.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
Length = 152
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 103/162 (63%), Gaps = 10/162 (6%)
Query: 337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIF 396
FSP+G LI + + E N G+ + + DGS R I AF +W ++ V+YTS GP F
Sbjct: 1 FSPNGSLIAYIPNIE-NTGVYVMRLDGSGR-RKIFSGAAFGTAWD-WKRGVVYTSAGPGF 57
Query: 397 QSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR 456
++ER TV I + +D E KILTKE+ NNAFPS SPDGK++VFRSGR
Sbjct: 58 ETERTTVDIVAIY----NADKEGISESEISYKILTKED--NNAFPSPSPDGKYVVFRSGR 111
Query: 457 SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
+GHKNL+++DA GE G + QLT+GPW DTM +WSP G+ I
Sbjct: 112 TGHKNLYIMDAEEGE-EGGLWQLTEGPWTDTMCTWSPDGEWI 152
>gi|361068097|gb|AEW08360.1| Pinus taeda anonymous locus 2_7121_02 genomic sequence
gi|376337990|gb|AFB33551.1| hypothetical protein 2_7121_02, partial [Pinus cembra]
gi|376337992|gb|AFB33552.1| hypothetical protein 2_7121_02, partial [Pinus cembra]
Length = 152
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 103/162 (63%), Gaps = 10/162 (6%)
Query: 337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIF 396
FSP+G LI + + E N G+ + + DGS R I AF +W ++ V+YTS GP F
Sbjct: 1 FSPNGSLIAYIPNIE-NTGVYVMRLDGSGR-RKIFSGAAFGTAWD-WKRGVVYTSAGPGF 57
Query: 397 QSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR 456
++ER TV I + +D E KILTK++ NNAFPS SPDGKF+VFRSGR
Sbjct: 58 ETERTTVDIVAIY----NADKEGISESEISYKILTKKD--NNAFPSPSPDGKFVVFRSGR 111
Query: 457 SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
+GHKNL+++DA GE G + QLT+GPW DTM +WSP G+ I
Sbjct: 112 TGHKNLYIMDAEEGE-EGGLWQLTEGPWTDTMCNWSPDGEWI 152
>gi|376337994|gb|AFB33553.1| hypothetical protein 2_7121_02, partial [Pinus cembra]
gi|376337996|gb|AFB33554.1| hypothetical protein 2_7121_02, partial [Pinus cembra]
Length = 152
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 103/162 (63%), Gaps = 10/162 (6%)
Query: 337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIF 396
FSP+G LI + + E N G+ + + DGS R I AF +W ++ V+YTS GP F
Sbjct: 1 FSPNGSLIAYIPNIE-NTGVYVMRLDGSGR-RKIFSGAAFGTAWD-WKRGVVYTSAGPGF 57
Query: 397 QSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR 456
++ER TV I + +D E KILTK++ NNAFPS SPDGKF+VFRSGR
Sbjct: 58 ETERTTVDIVAIY----NADKEGISESEISYKILTKKD--NNAFPSPSPDGKFVVFRSGR 111
Query: 457 SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
+GHKNL+++DA GE G + QLT+GPW DTM +WSP G+ I
Sbjct: 112 NGHKNLYIMDAEEGE-EGGLWQLTEGPWTDTMCNWSPDGEWI 152
>gi|395008490|ref|ZP_10392140.1| periplasmic component of the Tol biopolymer transport system
[Acidovorax sp. CF316]
gi|394313492|gb|EJE50504.1| periplasmic component of the Tol biopolymer transport system
[Acidovorax sp. CF316]
Length = 637
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 164/643 (25%), Positives = 260/643 (40%), Gaps = 119/643 (18%)
Query: 28 FVNAPKFHEHRLTDGTSINFNAQF-VDGQDQTIAFISERSG--SPRIYQTRPGSSKTELL 84
NA +E +L D ++++NA F DGQ I F SER G + +Y+ R ++ E L
Sbjct: 49 IANADGSNERKLIDSGTLDYNASFSADGQ--WIVFTSERDGLGNSNLYRARTDGTQVERL 106
Query: 85 PSIPCSLFHDRPVAR--NNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPY---- 138
S+ D +K+ F+S D + + ++ DLK LT
Sbjct: 107 TD--GSIVEDAAALSPDASKVAFVSTR---DGMLAN---IWMLDLKIRTLKNLTGVKGIQ 158
Query: 139 GVVD-----YSPSVSYSGKFIAVASYESRPWPGEF------HELNTDIVVFQESDPNKRV 187
G D + PS S G+++A +S W G H I V + R
Sbjct: 159 GRADSPNGFFRPSWSPDGQWLAFSSDRDTEWKGHHNGAGWEHTQELSIYVIRADGTGFRK 218
Query: 188 IVCERG---GWPTWSGDST--IYFHRQADDGWWSI--------------FRVSFPENLEF 228
I + G P WS D +++ QA+ +W + V+ E E
Sbjct: 219 ISSRKDYCQGSPKWSADGKRIVFYETQAEYTYWVLRPDLLLKIDSQIVSVDVASGERTEH 278
Query: 229 L---GFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHY 285
GF I+P + + DG A + ++I L
Sbjct: 279 TSGPGFKISPQYLGSDEIVYRRKGGPEDGLYSTAAGKA------MVKIAGLR-------- 324
Query: 286 NPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIV 345
P S + + + Y +F + + E R R +P+FS DG +++
Sbjct: 325 TPAWSPDGKRVVYEKFTWRGWKQNQALYSWEAG-------REYRYTDVWPAFSKDGWMVL 377
Query: 346 -FNHDFELNAGIKIAKSDGSKR-------------WTLIKD--RTAFYNSWSPTEKHVIY 389
H+ + + + ++DGS+R TL+K AF+ WSP + +++
Sbjct: 378 TAKHE---DGSVDVMRADGSERRRVYDVTKQSGLDLTLVKRGLAGAFFPVWSPDGEWIVF 434
Query: 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF 449
Q + ++ RV D + E+ LT + N FPS S DGK
Sbjct: 435 GVGEWFTQRGKGRAKLMRVK-----RDGSGLEQ-------LTDDSVFNAGFPSYSADGKE 482
Query: 450 LVFRSGRS--GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP 507
+VFR +L L +N E IR +T G D MP WSP G I F+ NP
Sbjct: 483 VVFRIANQDPSSASLGGLAVLNLETR-QIRHITRG--YDNMPIWSPDGSRILFNRGVRNP 539
Query: 508 DNVEA-FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVM 566
D++ + F LY ++PDGS LRR+ P G H ++ADG+ +L+ +
Sbjct: 540 DSIWSNFDLYTVRPDGSDLRRL-TDHPASDG--------HPVWTADGKQILYNSGQAGYR 590
Query: 567 AEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
E + FQPYG ++V+ DGSG R++T + +E+ TP + P
Sbjct: 591 DEACHYDQTFQPYGQVFVMNADGSGKRQITDSIWEDSTPQYAP 633
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 87/211 (41%), Gaps = 42/211 (19%)
Query: 339 PDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQS 398
P G ++ N + I IA +DGS LI T YN+ + I +F S
Sbjct: 30 PAKGPLLLNRIGPSASQIFIANADGSNERKLIDSGTLDYNASFSADGQWI------VFTS 83
Query: 399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG 458
ER + + + D + E D I+ + SPD + F S R G
Sbjct: 84 ERDGLGNSNL---YRARTDGTQVERLTDGSIVEDA-------AALSPDASKVAFVSTRDG 133
Query: 459 H-KNLFVLD----------AVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR--- 504
N+++LD V G I+ D P PSWSP G +AFSS+R
Sbjct: 134 MLANIWMLDLKIRTLKNLTGVKG-----IQGRADSPNGFFRPSWSPDGQWLAFSSDRDTE 188
Query: 505 ----HNP---DNVEAFSLYVIKPDGSGLRRI 528
HN ++ + S+YVI+ DG+G R+I
Sbjct: 189 WKGHHNGAGWEHTQELSIYVIRADGTGFRKI 219
>gi|376337986|gb|AFB33549.1| hypothetical protein 2_7121_02, partial [Abies alba]
Length = 150
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 78/163 (47%), Positives = 104/163 (63%), Gaps = 14/163 (8%)
Query: 337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIF 396
FSP+G LI + + E +G+ + DGS R I AF +W ++ V+YTS GP F
Sbjct: 1 FSPNGSLIAYIPNIEY-SGVYSMRLDGSGR-RKIFSGAAFGTAWD-WKRGVVYTSAGPGF 57
Query: 397 QSERATVQIARVSFQLDPSDDNNREEIP-CDVKILTKEETGNNAFPSCSPDGKFLVFRSG 455
++E+ TV I + + +RE+I K LTKE GNNAFPS SPDGKF+VFRSG
Sbjct: 58 ETEKTTVDIVAIY-------NADREDISEISYKTLTKE--GNNAFPSPSPDGKFVVFRSG 108
Query: 456 RSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
R+GHKNL+++DA GE G + QLT+GPW DTM +WSP G+ I
Sbjct: 109 RTGHKNLYIMDAEEGE-EGGLWQLTEGPWTDTMCNWSPDGEWI 150
>gi|376337988|gb|AFB33550.1| hypothetical protein 2_7121_02, partial [Larix decidua]
Length = 152
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 101/162 (62%), Gaps = 10/162 (6%)
Query: 337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIF 396
FSP+G LI + + E N G+ + + DGS R I AF +W ++ V+YTS GP F
Sbjct: 1 FSPNGSLIAYIPNIE-NTGVYVMRLDGSGR-RKIFSGAAFGTAWD-WKRGVVYTSAGPGF 57
Query: 397 QSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR 456
++E+ TV I + +D E K LTK + NNAFPS SPDGKF+VFRSGR
Sbjct: 58 ETEKTTVDIVAIY----NADSEGISESEISYKTLTKVD--NNAFPSPSPDGKFVVFRSGR 111
Query: 457 SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
+GHKNL+++DA GE G + QLT+GPW DTM +WSP G+ I
Sbjct: 112 TGHKNLYIMDAEEGE-EGGLWQLTEGPWTDTMCNWSPDGEWI 152
>gi|218192691|gb|EEC75118.1| hypothetical protein OsI_11299 [Oryza sativa Indica Group]
Length = 189
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 94/187 (50%), Gaps = 33/187 (17%)
Query: 142 DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNK-RVIVCERGGWPTWSG 200
D SPSVS SGK +AVASY+ + W GE LNT+I V +P++ R V E GGWP+W
Sbjct: 9 DISPSVSPSGKKVAVASYQGKKWDGEIKNLNTNIYVMSLENPSQDRERVIENGGWPSWGS 68
Query: 201 DSTIYFHRQADDG---WWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRL 257
+ I+FHR+ DG W +FR + RVTP TPAA D R+
Sbjct: 69 EDVIFFHRKDGDGENSCWGVFRHTLSTG--------ETVRVTPAAFDSVTPAAI-DETRV 119
Query: 258 AVATRRKNRNF---------RHIEIYDL-----------TLNPNFHHYNPFVSANSEFIG 297
AVA R+ F RHIE++D+ P H+NPFV +FIG
Sbjct: 120 AVAAIRQKSEFSDVRVEAQYRHIEVFDMRSPEQPMQITRNTRPKADHFNPFVMDGGKFIG 179
Query: 298 YHRFRGE 304
YHR + E
Sbjct: 180 YHRCKSE 186
>gi|399073331|ref|ZP_10750379.1| periplasmic component of the Tol biopolymer transport system
[Caulobacter sp. AP07]
gi|398041697|gb|EJL34752.1| periplasmic component of the Tol biopolymer transport system
[Caulobacter sp. AP07]
Length = 602
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 163/630 (25%), Positives = 241/630 (38%), Gaps = 130/630 (20%)
Query: 28 FVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSI 87
+A H ++ NA F Q + F S R+G+ IY+ S E L +
Sbjct: 47 IADADGSHATAFLPDAELDSNASF-SSDGQWVLFTSRRAGTSDIYRAHLDGSGLERLVAS 105
Query: 88 PCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSV 147
P L F+S+ I + DL + LT D+ PS
Sbjct: 106 PAYDDQAALSPDGRSLAFVSSRGGQADI-------WILDLASKALRNLTHDPAGDFRPSW 158
Query: 148 SYSGKFIAVASYESRPWP----GEF---HELNTDIVVFQESDPNKRVIVCERGGWPTWSG 200
S G+++A +S P G+F H IV ++ + + G PTWS
Sbjct: 159 SPDGRWLAFSSDRVSEHPRIPEGDFTLRHSTEIYIVKVDGTELRRVTRDGQFAGSPTWSP 218
Query: 201 DSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVA 260
D G +A T P V T A
Sbjct: 219 D----------------------------GSKLAFYAATLPEVRNITAA----------- 239
Query: 261 TRRKNRNFRHIEIYDLTLNPNF------------HHYNP----FVSANSE-----FIGYH 299
R+ R IE DL + H P +VS E G
Sbjct: 240 --RRLRGVTQIEAVDLGTGASQVLTSGAGEKWSPHWLAPDRIGYVSGGPEGGVEATAGPS 297
Query: 300 RFRGE------STEGQSTIPHLEPVASPVKELRMLRLN--------GSFPSFSPDGGLIV 345
RGE S +G+ + H E ++ + R + L+ G FPS+SP G V
Sbjct: 298 GARGEFNSPSWSPDGRHMLFHREVDSTWPPDRRWVSLDPRFGLRRVGIFPSYSPTGDRRV 357
Query: 346 FNHDFE--LNAGIKIAKSDGSKRWTLIKD--RTAFYNSWSPTEKHVIYTSTGPIFQSERA 401
N L+ + + +DGS L D ++A SWS + + G FQ +
Sbjct: 358 SNDKTAGILHNSVLMMNADGSGASVLFGDAEKSALAPSWSRQGDRIAF-GLGQFFQGIKG 416
Query: 402 TVQ--IARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGH 459
Q IA + Q +K+LTK TGN FP S DG+ +V+R ++G
Sbjct: 417 PAQADIAVIDAQ------------GGGLKLLTKG-TGNFGFPDWSGDGRHIVYR--QAGA 461
Query: 460 KNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIK 519
N LD V+ + +G+ L GP P+WSP D+IAF+++ + +Y I+
Sbjct: 462 AN--ALDVVDLD-SGESHVLLAGPAHYNFPAWSPTADVIAFTADIDGD-----YEIYSIR 513
Query: 520 PDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPY 579
DGSGL+R+ + + H +S DG+W+ F + G E + P QPY
Sbjct: 514 ADGSGLKRLTRSPGNDA---------HNAWSPDGKWIAFASARGGFKDEALLHPANPQPY 564
Query: 580 GDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G++YV++ DGS LT +E GTPAW P
Sbjct: 565 GEIYVMRADGSEAHALTDEPFEKGTPAWAP 594
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 86/210 (40%), Gaps = 39/210 (18%)
Query: 301 FRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAK 360
F+G Q+ I ++ +K L N FP +S DG IV+ NA + +
Sbjct: 411 FQGIKGPAQADIAVIDAQGGGLKLLTKGTGNFGFPDWSGDGRHIVYRQAGAANA-LDVVD 469
Query: 361 SDGSKRWTLIKDRTAFYN--SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDN 418
D + L+ A YN +WSPT + +T+ D D
Sbjct: 470 LDSGESHVLLAG-PAHYNFPAWSPTADVIAFTA---------------------DIDGDY 507
Query: 419 NREEIPCD---VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGD 475
I D +K LT+ GN+A + SPDGK++ F S R G K+ +L N + G+
Sbjct: 508 EIYSIRADGSGLKRLTRSP-GNDAHNAWSPDGKWIAFASARGGFKDEALLHPANPQPYGE 566
Query: 476 I----------RQLTDGPWIDTMPSWSPKG 495
I LTD P+ P+W+P G
Sbjct: 567 IYVMRADGSEAHALTDEPFEKGTPAWAPTG 596
>gi|332530720|ref|ZP_08406649.1| hypothetical protein HGR_12282 [Hylemonella gracilis ATCC 19624]
gi|332039810|gb|EGI76207.1| hypothetical protein HGR_12282 [Hylemonella gracilis ATCC 19624]
Length = 638
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 163/659 (24%), Positives = 259/659 (39%), Gaps = 149/659 (22%)
Query: 28 FVNAPKFHEHRLTDGTSINFNAQFV-DGQDQTIAFISERSG--SPRIYQTRPGSSKTELL 84
NA +E L D ++++NA F DGQ I F SER G + +Y+ R ++ E L
Sbjct: 48 IANADGSNERLLIDSGTLDYNASFSSDGQ--WIVFTSERDGLGNSNLYRARADGTQVERL 105
Query: 85 PSIPCSLFHDRPV--ARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVD 142
P D V +K+ F+S + + ++ DL+ K LT V
Sbjct: 106 TDSPA--VDDAAVFSPDGSKVAFVSTRD------GFLANIWVLDLQTRKLRNLTGIKGVQ 157
Query: 143 -----------YSPSVSYSGKFIAVASYESRPWPGEF------HELNTDIVVFQESDPNK 185
+ PS S G+++A +S + W G H I V +
Sbjct: 158 ADDLQNSPSGFFRPSWSPDGQWLAFSSDRNTEWKGHHDGAGWEHTQELSIYVIRVDGTGL 217
Query: 186 RVIVCERG---GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENL-EFLGFPIAPTRVTPP 241
R + + G P WSGD R+ F E L E+ + + P +
Sbjct: 218 RRVASRKDHCLGSPRWSGDGK---------------RIVFYETLAEYTYWVLRPDLLLK- 261
Query: 242 GVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRF 301
D + ++V R H E ++P + N E + +R
Sbjct: 262 ----------IDSQIVSVDVDSGARTV-HTEGPGFKISPQY-------IGNDEIV--YRR 301
Query: 302 RGESTEG-QSTIP-----HLEPVASPVKEL---------------------------RML 328
+G EG ST+P LE + +P R
Sbjct: 302 KGGPAEGLYSTVPGRPVVKLEGLRTPAWSTDGRRVVYEKFTWRGWTQNQALYSWDAGRPY 361
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW-------------TLIKD--R 373
R +P+F+ DG +++ + + + I + DGS R L+K
Sbjct: 362 RYTDVWPAFAKDGTMVLTAKGED--SSVDIMRPDGSARRRVYDVSRQSGLDPVLVKRGLA 419
Query: 374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE 433
AF+ WSP + +++ Q R ++ RV D + E+ LT +
Sbjct: 420 GAFFPVWSPDGEWIVFGVGEWFTQRGRGRAKLMRVR-----RDGSGLEQ-------LTDD 467
Query: 434 ETGNNAFPSCSPDGKFLVFRSGRSGHKN--LFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491
N FPS S DGK +VFR K+ L L +N E IR++T G D MP W
Sbjct: 468 SIFNAGFPSYSADGKEVVFRIANEDPKSASLGGLAVLNLETR-QIRRITAG--YDNMPIW 524
Query: 492 SPKGDLIAFSSNRHNPDNVEA-FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS 550
SP G I F+ NP+++ + F LY ++PDGS L+R+ + P G H ++
Sbjct: 525 SPDGSRILFNRGVRNPNSIWSNFDLYTVRPDGSDLQRL-TSHPASDG--------HPVWT 575
Query: 551 ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
DG+ +L+ + + E + FQPYG L+V+ DG R++T + +E+ TP + P
Sbjct: 576 PDGKQILYNSGMAGYRDEACHYDQTFQPYGQLFVMDADGRNKRQITDSIWEDSTPQYVP 634
>gi|361068759|gb|AEW08691.1| Pinus taeda anonymous locus CL1213Contig1_01 genomic sequence
Length = 97
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 71/98 (72%), Gaps = 1/98 (1%)
Query: 401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHK 460
ATV I + F + EE+ +V+ILTK+ T NNAFPS SPDGK LVFRSGRSGHK
Sbjct: 1 ATVHIISIRFNPEDLGLEELEEVKSEVRILTKDGTKNNAFPSSSPDGKQLVFRSGRSGHK 60
Query: 461 NLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
NL+++DA GE G IR LT+GPWIDTMPSWSP G+ I
Sbjct: 61 NLYIMDAEQGE-EGGIRALTEGPWIDTMPSWSPDGEWI 97
>gi|116626608|ref|YP_828764.1| hypothetical protein Acid_7571 [Candidatus Solibacter usitatus
Ellin6076]
gi|116229770|gb|ABJ88479.1| WD40 domain protein beta Propeller [Candidatus Solibacter usitatus
Ellin6076]
Length = 638
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 135/296 (45%), Gaps = 44/296 (14%)
Query: 328 LRLNGSFPSFSPDGGLIVFNHDFEL-----NAGIKIAKSDGSKRWTLIKDRTAFYNSWSP 382
L L G P+FSP G +V N + + ++ SK K+R WSP
Sbjct: 364 LSLTGILPAFSPSGRELVTNSPPSATPRGSSISVTALETGISKVVYEDKNRNVLVGGWSP 423
Query: 383 TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE--------- 433
+ +I+ E A S L D R E + I+ +
Sbjct: 424 DGRRIIFA------IGEFAAFFDGFHSRFLKVGD---RAETGARLAIVNADGTGLTELTA 474
Query: 434 ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
E GNNAFPS SPDGK V+R+ L +++ RQ D P WSP
Sbjct: 475 EPGNNAFPSFSPDGKRFVYRTFTEDGYGLRIMNLETKTGKILTRQY------DNFPLWSP 528
Query: 494 KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADG 553
+GDLI FS A+ +Y IKPDGS L+R+ + H+ +S DG
Sbjct: 529 RGDLITFSRQIEG-----AYEIYTIKPDGSSLKRLTFT---------KGNDAHMAWSPDG 574
Query: 554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
E+++FT++ E V++ + QPYG+++V++ DG+G+ +LT N +E GTPAW P
Sbjct: 575 EYIVFTSSRMGFKDE-VAYTDAPQPYGEIFVMRYDGTGVEQLTDNQWEEGTPAWQP 629
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 90/188 (47%), Gaps = 33/188 (17%)
Query: 355 GIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD 413
G+ +A SDGS L+ Y+ +W+P +++TS + + F+++
Sbjct: 64 GLFVAASDGSDEHPLLASADTDYDPAWAPDGGSIVFTS------ERNGSADL----FRVN 113
Query: 414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG-HKNLFVLDAVNGEF 472
P +K LT + ++ + S D K L F S R G NL+ +D V G
Sbjct: 114 PDGSG--------LKQLTADPAYDDQ-ATFSSDSKQLAFVSTRGGGTANLWTMDLVTGR- 163
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP--------DNVEAFSLYVIKPDGSG 524
R LT GP D PSWSP G IAFSS R NP + ++ +YVI+PDGSG
Sbjct: 164 ---ARALTSGPGGDFRPSWSPDGKWIAFSSGRDNPVPFASGRWERLQLSDIYVIRPDGSG 220
Query: 525 LRRIHVAG 532
L++I +G
Sbjct: 221 LKKITKSG 228
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 42/216 (19%)
Query: 295 FIGYH-RFR--GESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFE 351
F G+H RF G+ E + + + + + EL N +FPSFSPDG V+ E
Sbjct: 439 FDGFHSRFLKVGDRAETGARLAIVNADGTGLTELTAEPGNNAFPSFSPDGKRFVYRTFTE 498
Query: 352 LNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411
G++I + +K ++ + + WSP + ++ ++ A +
Sbjct: 499 DGYGLRIMNLE-TKTGKILTRQYDNFPLWSPRGDLITFSR----------QIEGAYEIYT 547
Query: 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKN---------- 461
+ P + +K LT + GN+A + SPDG+++VF S R G K+
Sbjct: 548 IKPDGSS--------LKRLTFTK-GNDAHMAWSPDGEYIVFTSSRMGFKDEVAYTDAPQP 598
Query: 462 ---LFVLDAVNGEFNG-DIRQLTDGPWIDTMPSWSP 493
+FV+ ++G + QLTD W + P+W P
Sbjct: 599 YGEIFVM-----RYDGTGVEQLTDNQWEEGTPAWQP 629
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 112/290 (38%), Gaps = 62/290 (21%)
Query: 336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPI 395
S+SPDG L+VF AK S+ T ++SP+ + ++ T++ P
Sbjct: 329 SWSPDGKLVVFCRRANTPRPAGGAKRTFSRNSKYELSLTGILPAFSPSGRELV-TNSPPS 387
Query: 396 FQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSG 455
+++ + + + K++ +++ N SPDG+ ++F G
Sbjct: 388 ATPRGSSISVTALETGIS--------------KVVYEDKNRNVLVGGWSPDGRRIIFAIG 433
Query: 456 R-----SGHKNLFV-----------LDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
G + F+ L VN + G + +LT P + PS+SP G
Sbjct: 434 EFAAFFDGFHSRFLKVGDRAETGARLAIVNADGTG-LTELTAEPGNNAFPSFSPDG---- 488
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559
+ F DG GLR +++ G + R+ N +S G+ + F+
Sbjct: 489 -----------KRFVYRTFTEDGYGLRIMNLETKTGK-ILTRQYDNFPLWSPRGDLITFS 536
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
Q + ++Y +K DGS L+RLT+ + AW P
Sbjct: 537 --------------RQIEGAYEIYTIKPDGSSLKRLTFTKGNDAHMAWSP 572
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 12/152 (7%)
Query: 58 TIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFK 117
+I F SER+GS +++ P S + L + P + + +L F+S
Sbjct: 96 SIVFTSERNGSADLFRVNPDGSGLKQLTADPAYDDQATFSSDSKQLAFVSTRG------G 149
Query: 118 SWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWP---GEFHELNTD 174
+ L++ DL + LT D+ PS S GK+IA +S P P G + L
Sbjct: 150 GTANLWTMDLVTGRARALTSGPGGDFRPSWSPDGKWIAFSSGRDNPVPFASGRWERLQLS 209
Query: 175 IVVFQESDPNKRVIVCERG---GWPTWSGDST 203
+ D + + + G G P W GDS+
Sbjct: 210 DIYVIRPDGSGLKKITKSGNFCGSPKWMGDSS 241
>gi|361068761|gb|AEW08692.1| Pinus taeda anonymous locus CL1213Contig1_01 genomic sequence
gi|376338658|gb|AFB33859.1| hypothetical protein CL1213Contig1_01, partial [Pinus mugo]
gi|376338660|gb|AFB33860.1| hypothetical protein CL1213Contig1_01, partial [Pinus mugo]
gi|383135224|gb|AFG48604.1| Pinus taeda anonymous locus CL1213Contig1_01 genomic sequence
Length = 97
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 72/98 (73%), Gaps = 1/98 (1%)
Query: 401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHK 460
ATV I +SF+ + EE+ +V+ILTK+ T NNAFPS SPDGK LVFRSGRSGHK
Sbjct: 1 ATVHIISISFKPEDLALEESEEVKSEVRILTKDGTKNNAFPSSSPDGKQLVFRSGRSGHK 60
Query: 461 NLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
NL+++DA GE G I LT+GPWIDTMPSWSP G+ I
Sbjct: 61 NLYIMDAEKGE-EGGIHALTEGPWIDTMPSWSPDGEWI 97
>gi|383135218|gb|AFG48601.1| Pinus taeda anonymous locus CL1213Contig1_01 genomic sequence
Length = 97
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 73/98 (74%), Gaps = 1/98 (1%)
Query: 401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHK 460
ATV I +SF+ + EE+ +V+ILTK+ T NNAFPS SPDGK LVFRSGRSGHK
Sbjct: 1 ATVHIISISFKPEDLALEESEEVKSEVRILTKDGTKNNAFPSSSPDGKQLVFRSGRSGHK 60
Query: 461 NLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
NL+++DA GE +G I LT+GPWIDTMPSWSP G+ I
Sbjct: 61 NLYIMDAEKGEESG-IHALTEGPWIDTMPSWSPDGEWI 97
>gi|383135220|gb|AFG48602.1| Pinus taeda anonymous locus CL1213Contig1_01 genomic sequence
gi|383135222|gb|AFG48603.1| Pinus taeda anonymous locus CL1213Contig1_01 genomic sequence
gi|383135226|gb|AFG48605.1| Pinus taeda anonymous locus CL1213Contig1_01 genomic sequence
Length = 97
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 72/98 (73%), Gaps = 1/98 (1%)
Query: 401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHK 460
ATV I +SF+ + EE+ +V+ILTK+ T NNAFPS SPDGK LVFRSGRSGHK
Sbjct: 1 ATVHIISISFKPEDLALEESEEVKSEVRILTKDGTKNNAFPSSSPDGKQLVFRSGRSGHK 60
Query: 461 NLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
NL+++DA GE G I LT+GPWIDTMPSWSP G+ I
Sbjct: 61 NLYIMDAEEGE-EGGIHALTEGPWIDTMPSWSPDGEWI 97
>gi|349701318|ref|ZP_08902947.1| hypothetical protein GeurL1_11025 [Gluconacetobacter europaeus LMG
18494]
Length = 614
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 159/651 (24%), Positives = 247/651 (37%), Gaps = 150/651 (23%)
Query: 28 FVNAPKFHEHRLTDGTSINFNAQFV-DGQDQTIAFISERSG--SPRIYQTRPGSSKTELL 84
NA E G ++++A F DGQ +I F SER+G I++ RP T++
Sbjct: 44 IANADGRDERPFLSGNGLDYHASFSPDGQ--SILFTSERNGLGQADIFRARP--DGTDVT 99
Query: 85 PSIPCSLFHDRPVAR--NNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVD 142
P I D V +L F+S + ++ DL+ K LT V
Sbjct: 100 PLISHPSVDDAAVLSPDGTRLAFVSTRN------GYRANIWVMDLRTGKLRNLTGSARVQ 153
Query: 143 ---------YSPSVSYSGKFIAVASYESRPWPGE------FHELNTDIVVFQESDPNKRV 187
+ P+ S G+++A +S + PW G H I + R
Sbjct: 154 GDKAGPDCFFRPAWSPDGRWLAFSSDRNTPWRGHDNGRGWEHTQELSIYIIGADGRGFRR 213
Query: 188 IVCERG---GWPTWSGDST-IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGV 243
I G P WS D + F+ + W R PE + + I V
Sbjct: 214 IAARPDYCLGSPKWSPDGRRVVFYEMLTESTWGARR---PEGVASVVSQIVSVDVA---- 266
Query: 244 HCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRG 303
G+R+ +H T P + FV+A IGYHR +G
Sbjct: 267 ---------SGERI-----------QH------TSGPGLKVFPQFVTA--RIIGYHR-KG 297
Query: 304 ESTEGQSTIPHL--------EPVASPVKELRML-----------------------RLNG 332
EG + + P SP M R
Sbjct: 298 GPDEGLAYTTDIAAIHRVLRSPAWSPDGRQVMYEKASFRPFAQNQPLYSWDPERDYRHTD 357
Query: 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRT-------------AFYN 378
FP S DG L++ LN+ I I DGS R + RT AF
Sbjct: 358 VFPGLSRDGKLVLTEK--ALNSSIAIMNPDGSDRQRIFDVSRTHLNQMQVAHGMAGAFAP 415
Query: 379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN 438
+WSP + + + G FQ+ R T + + + D S V+ LT + T ++
Sbjct: 416 AWSPDGQWIAF-GLGQWFQARR-TGRAVVMRMRRDGSA----------VEPLT-DGTVHS 462
Query: 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
FPS S DG+ +V+R + L +LD + R LT D +P WSP G I
Sbjct: 463 GFPSYSADGQQVVYRVWGENNMGLRILDLPTRQ----TRVLTTA--YDNLPGWSPDGGRI 516
Query: 499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLF 558
F+ + E + ++ I+P+G+GL+R+ +G H ++ADG +++
Sbjct: 517 VFTRRVDD----ENYDIFTIRPNGTGLKRLTTSGAND---------GHAVWTADGR-IMW 562
Query: 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
++ + E + N FQPYG ++++ DGS R LT + +E+ P + P
Sbjct: 563 SSGIYGFRDEAALYDNTFQPYGQIFIMNADGSHKRILTDSLWEDSMPLYVP 613
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 97/204 (47%), Gaps = 34/204 (16%)
Query: 342 GLIVFNHDFELNAGIKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSER 400
G+++ N + + IA +DG +R L + ++ S+SP + +++TS ER
Sbjct: 28 GVMLMNRIGPSASQLYIANADGRDERPFLSGNGLDYHASFSPDGQSILFTS-------ER 80
Query: 401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHK 460
+ A + F+ P DV L + ++A SPDG L F S R+G++
Sbjct: 81 NGLGQADI-FRARPDG--------TDVTPLISHPSVDDA-AVLSPDGTRLAFVSTRNGYR 130
Query: 461 -NLFVLDAVNGEF---NGDIRQLTD--GPWIDTMPSWSPKGDLIAFSSNRHNP------- 507
N++V+D G+ G R D GP P+WSP G +AFSS+R+ P
Sbjct: 131 ANIWVMDLRTGKLRNLTGSARVQGDKAGPDCFFRPAWSPDGRWLAFSSDRNTPWRGHDNG 190
Query: 508 ---DNVEAFSLYVIKPDGSGLRRI 528
++ + S+Y+I DG G RRI
Sbjct: 191 RGWEHTQELSIYIIGADGRGFRRI 214
>gi|224056417|ref|XP_002298846.1| predicted protein [Populus trichocarpa]
gi|222846104|gb|EEE83651.1| predicted protein [Populus trichocarpa]
Length = 129
Score = 90.5 bits (223), Expect = 3e-15, Method: Composition-based stats.
Identities = 43/93 (46%), Positives = 58/93 (62%)
Query: 103 LFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESR 162
L ++S HE P + SW+A+Y+T+L RLTP+G+ D+S +VS SG + VASY R
Sbjct: 35 LVYMSTHENPGEPRTSWAAVYATELTTRVTQRLTPHGIADFSLAVSPSGVYTVVASYGER 94
Query: 163 PWPGEFHELNTDIVVFQESDPNKRVIVCERGGW 195
W GE EL+TDI +F D + RV V E G W
Sbjct: 95 GWSGEVEELSTDIYIFLTRDGSNRVKVVEHGDW 127
>gi|170693891|ref|ZP_02885048.1| hypothetical protein BgramDRAFT_3858 [Burkholderia graminis C4D1M]
gi|170141309|gb|EDT09480.1| hypothetical protein BgramDRAFT_3858 [Burkholderia graminis C4D1M]
Length = 642
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 154/658 (23%), Positives = 248/658 (37%), Gaps = 105/658 (15%)
Query: 3 PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFV-DGQDQTIAF 61
PKGT+ VG S + NA E +L T +++A F DGQ + F
Sbjct: 37 PKGTLFLNRVGP-------VSSELYISNADGTGERKLIPSTGFDYHASFSKDGQ--WLVF 87
Query: 62 ISERSGSPR--IYQTR-PGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKS 118
SER G+ + +Y+ + G+ L I N + F+S+ D +
Sbjct: 88 TSERDGAGQSNLYRVKVDGTGLERLTDHIAVDDAAVFSPTDPNVIAFVSSRRGNDGFGTT 147
Query: 119 WSALYSTDLKASKFTRLT---------PYGVVDYSPSVSYSGKFIAVASYESRPWPGEFH 169
+++ +L +T P+G + PS S GK++A++S W G H
Sbjct: 148 --NVWTLNLSTGALNNVTGSLGFDPTRPHGY--FRPSWSPDGKWLALSSDTGSDWRG--H 201
Query: 170 ELNTDIVVFQESDPNKRVIVCERGGW-------------PTWSGDST-IYFHRQADDGWW 215
L T QES + ++ + GW P+WS D + F+ + W
Sbjct: 202 NLPTGWERTQES--SIYIVRPDGSGWKKIAGVSGYDEGSPSWSPDGKRVVFYETPVESTW 259
Query: 216 SIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAA-------FHDGKRLAVATRRKNRNF 268
R PE++ + + +T T A + + +A + +
Sbjct: 260 GAHR---PESINSVSSQLVSVDITSLSRTTLTSTAGFKVFPQYLNAATVAYHVKGGSTEG 316
Query: 269 RHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRML 328
+ N +P S + + Y + T P+ S + +
Sbjct: 317 LYTTAGTFHSTANTGIRSPRYSPDGTKLVYEKVAFSPARANGT-----PLFSFDPAWKYI 371
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD---------------R 373
L+ FP S D +V+ +N+ I +A + S +T I D
Sbjct: 372 YLD-VFPQLSRDRAKLVYTEK-AINSSIAVANPNLSG-YTRIYDPATSGLDPAAIAQGLA 428
Query: 374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE 433
AF +WSP + V + F QI R+ + D S N + E D I
Sbjct: 429 GAFQPAWSPDRQWVAFGVGNWFFTRSTGPAQIMRI--RADGSM-NGQAEALTDGSI---- 481
Query: 434 ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
N+ FPS SPDGK LV+R + L +LD LT G D +P WSP
Sbjct: 482 ---NSGFPSYSPDGKKLVYRVWSDAVQGLRILDLATRS----TTVLTSG--ADNLPGWSP 532
Query: 494 KGDLIAFSSNRHNPDNVEAFS--LYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSA 551
G I F+ + + N F+ ++ I+PDG+GL R+ D H ++
Sbjct: 533 DGSRIVFTRKQIDATNPNRFNYDVFTIRPDGTGLTRLT---------TDGSNQGHAVWTW 583
Query: 552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
DG + +++ E + N FQP G +V+ DGS R +T +E P + P
Sbjct: 584 DGR-IAYSSGTYGFRDELALYDNSFQPDGQNWVMNADGSNQRPITDTLWEEAMPLYIP 640
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 27/105 (25%)
Query: 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSA 551
+PKG L NR P + E LY+ DG+G R++ P D H FS
Sbjct: 36 APKGTLFL---NRVGPVSSE---LYISNADGTGERKLI---PSTGFDY------HASFSK 80
Query: 552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596
DG+WL+FT+ +LY VK+DG+GL RLT
Sbjct: 81 DGQWLVFTSERDGAGQS------------NLYRVKVDGTGLERLT 113
>gi|430747747|ref|YP_007206876.1| Tol biopolymer transport system periplasmic protein [Singulisphaera
acidiphila DSM 18658]
gi|430019467|gb|AGA31181.1| periplasmic component of the Tol biopolymer transport system
[Singulisphaera acidiphila DSM 18658]
Length = 311
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 131/305 (42%), Gaps = 53/305 (17%)
Query: 312 IPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKI------AKSDGSK 365
+ +P A V L L+ PS++PDG ++F + G +I +S S
Sbjct: 27 VSQQQPSAGQVVRLTHDGLDKQRPSWAPDGHQLLFAR--HESGGSRIWEYVLDLRSPSSP 84
Query: 366 RWTLIKDRTAFYNS-WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIP 424
L + YN +SP V++T+ + + +A + +D + +
Sbjct: 85 ARRLTDRKAPEYNGVFSPDGSRVVFTAI--TLSGTQGNLDLAAIQ-----ADGTGLKTVV 137
Query: 425 CDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW 484
D L ++ +PS SPDG+ F S G++ ++ A D+ +LT P
Sbjct: 138 ADQGNLAHQD-----WPSWSPDGQRFAFSSTHEGNQEIYTAKADGS----DLIRLTQSPG 188
Query: 485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERI 544
+D P WSP G +IAF+++R E L ++PDG+GL+R+ S +D
Sbjct: 189 LDAHPCWSPDGQVIAFATDRW-----EGLELAAVRPDGTGLQRL-----TRSPGLD---- 234
Query: 545 NHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGT 604
++ FS DG WL F +N QF+ +Y+ DGS R + + + +
Sbjct: 235 DYPAFSPDGAWLAFVSNRDG----------QFE----VYLAGADGSAPRNFSQHPHRDTF 280
Query: 605 PAWHP 609
P W P
Sbjct: 281 PTWTP 285
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 91/225 (40%), Gaps = 27/225 (12%)
Query: 284 HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLN---GSFPSFSPD 340
YN S + + + T+G + ++ + +K + + N +PS+SPD
Sbjct: 95 EYNGVFSPDGSRVVFTAITLSGTQGNLDLAAIQADGTGLKTVVADQGNLAHQDWPSWSPD 154
Query: 341 GGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD-RTAFYNSWSPTEKHVIYTSTGPIFQSE 399
G F+ E N I AK+DGS L + + WSP + VI +T E
Sbjct: 155 GQRFAFSSTHEGNQEIYTAKADGSDLIRLTQSPGLDAHPCWSP-DGQVIAFATDRWEGLE 213
Query: 400 RATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGH 459
A V+ Q LT+ G + +P+ SPDG +L F S R G
Sbjct: 214 LAAVRPDGTGLQR-----------------LTRSP-GLDDYPAFSPDGAWLAFVSNRDGQ 255
Query: 460 KNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
+++ G R + P DT P+W+P G I F SNR
Sbjct: 256 FEVYLA----GADGSAPRNFSQHPHRDTFPTWTPDGRGITFVSNR 296
Score = 39.7 bits (91), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 31/178 (17%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNL--FVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
PS +PDG L+F SG + +VLD + + R+LTD + +SP G +
Sbjct: 50 PSWAPDGHQLLFARHESGGSRIWEYVLDLRSP--SSPARRLTDRKAPEYNGVFSPDGSRV 107
Query: 499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV---CFSADGEW 555
F++ + L I+ DG+GL+ + D+ + H +S DG+
Sbjct: 108 VFTAITLSGTQGN-LDLAAIQADGTGLKTVVA---------DQGNLAHQDWPSWSPDGQR 157
Query: 556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
F++ NQ ++Y K DGS L RLT + + P W P Q+
Sbjct: 158 FAFSSTHEG---------NQ-----EIYTAKADGSDLIRLTQSPGLDAHPCWSPDGQV 201
>gi|221212545|ref|ZP_03585522.1| WD40 domain protein beta Propeller [Burkholderia multivorans CGD1]
gi|221167644|gb|EEE00114.1| WD40 domain protein beta Propeller [Burkholderia multivorans CGD1]
Length = 640
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 159/659 (24%), Positives = 241/659 (36%), Gaps = 149/659 (22%)
Query: 28 FVNAPKFHEHRLTDGTSINFNAQFV-DGQDQTIAFISERSG--SPRIYQTRPGSSKTELL 84
NA EHRL +++ F DG+ + F SER G +Y+ R + + L
Sbjct: 52 IANADGSDEHRLIASGGFDYHGSFSPDGK--WVVFTSERDGLGHASLYRVRIDGTGLQRL 109
Query: 85 P---SIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSA--LYSTDLKASKFTRLTPYG 139
+ + +D A + + F+S+ D +W +++ +LK +T
Sbjct: 110 TDWTGVSDAAVYD--PADPDVIAFVSSRRDND----TWGTTNIWTLNLKTGALHNVTGDI 163
Query: 140 VVD-------YSPSVSYSGKFIAVASYESRPWPGEFHEL--------NTDIVVFQESDPN 184
D + PS S GK+IA +S W G H L T I +
Sbjct: 164 RFDPDKPHSFFRPSWSPDGKWIAFSSDLGTEWRG--HNLPVGWERTQETAIYEIRPDGTG 221
Query: 185 KRVIVCERG---GWPTWSGDST-IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTP 240
R I G G P+WS D I F+ + W R PE + + I V
Sbjct: 222 FRQIAARAGYADGSPSWSNDGKQIVFYETPVESTWGAHR---PEAIGKVSSQIVQVDV-- 276
Query: 241 PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHR 300
A R++ LT P F + +V A + YH
Sbjct: 277 -----------------ATGVRKQ-----------LTDTPGFKVFPQYVGATD--VAYHV 306
Query: 301 FRGE-----STEGQSTIPHLEPVASP-------------VKELRMLRLNGS--------- 333
G +T GQS + SP V + NG
Sbjct: 307 KNGAAEGLYTTAGQSRATAGSGIRSPRYSADGKKVVYEKVVYSKPFHPNGMPLYRFDPQW 366
Query: 334 -------FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRT------------ 374
FP S DG +V+ + + I +A +D S + T
Sbjct: 367 NYRFVDVFPQLSRDGKSLVYTEK-AVGSSIVVADTDFSHARHIYDPATSGLDPKLVAMGL 425
Query: 375 --AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK 432
AF +WSP ++ V++ F +IAR+ + D S N + EI D K
Sbjct: 426 AGAFQPTWSPDKQWVVFGVGSWFFTRAHMPGRIARI--RADGSM-NGKPEILTDGK---- 478
Query: 433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
N FPS SPDG +V+R K L +LD + LT P D +P WS
Sbjct: 479 ---ENAGFPSYSPDGTRIVYRVWSETDKGLRILDLNTRK----TMVLTTEP--DNLPGWS 529
Query: 493 PKGDLIAFSSNRHNPDNVEA--FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS 550
P G I F+ NP++ F +Y IKPDG+ +RR+ P G+ H ++
Sbjct: 530 PDGTRIVFTRKEVNPNDANKFHFDVYTIKPDGTDVRRLT---PPGANQA------HATWT 580
Query: 551 ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
DG + +++ E + + FQP G +V+ DGS +T +E+ P + P
Sbjct: 581 WDGR-IAYSSGEYGFRDELSLYDDTFQPDGQNWVMNADGSDRHAITDTLWEDSMPLYIP 638
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 94/185 (50%), Gaps = 26/185 (14%)
Query: 442 SCSPDGKFLVFRSGRS--GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG-DLI 498
S SPDGK++VF S R GH +L+ + ++G +++LTD + + P D+I
Sbjct: 74 SFSPDGKWVVFTSERDGLGHASLYRV-RIDGT---GLQRLTDWTGVSDAAVYDPADPDVI 129
Query: 499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV--DRERINHV---CFSADG 553
AF S+R + D +++ + L + +GD+ D ++ + +S DG
Sbjct: 130 AFVSSRRDNDTWGTTNIWTLNLKTGALHNV-------TGDIRFDPDKPHSFFRPSWSPDG 182
Query: 554 EWLLFTANLGAVMAE---PVSWPNQFQPYGDLYVVKLDGSGLRRLTWN-GYENGTPAW-H 608
+W+ F+++LG PV W + +Y ++ DG+G R++ GY +G+P+W +
Sbjct: 183 KWIAFSSDLGTEWRGHNLPVGWERTQETA--IYEIRPDGTGFRQIAARAGYADGSPSWSN 240
Query: 609 PGNQL 613
G Q+
Sbjct: 241 DGKQI 245
Score = 42.7 bits (99), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 28/110 (25%)
Query: 494 KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADG 553
KGDL+ + R P E LY+ DGS R+ SG D H FS DG
Sbjct: 35 KGDLLLY---RIGPTTSE---LYIANADGSDEHRLIA-----SGGFDY----HGSFSPDG 79
Query: 554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT-WNGYEN 602
+W++FT+ + + LY V++DG+GL+RLT W G +
Sbjct: 80 KWVVFTSERDGLG------------HASLYRVRIDGTGLQRLTDWTGVSD 117
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 72/181 (39%), Gaps = 38/181 (20%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYT 390
N FPS+SPDG IV+ E + G++I + K L + WSP +++T
Sbjct: 480 NAGFPSYSPDGTRIVYRVWSETDKGLRILDLNTRKTMVLTTEPDNL-PGWSPDGTRIVFT 538
Query: 391 STGPIFQSERATVQIARVSFQLDPSDDN-------NREEIPCDVKILTKEETGNNAFPSC 443
+++P+D N + DV+ LT N A +
Sbjct: 539 RK------------------EVNPNDANKFHFDVYTIKPDGTDVRRLT-PPGANQAHATW 579
Query: 444 SPDGKFLVFRSGRSGHKNLFVL-------DAVNGEFNG---DIRQLTDGPWIDTMPSWSP 493
+ DG+ + + SG G ++ L D N N D +TD W D+MP + P
Sbjct: 580 TWDGR-IAYSSGEYGFRDELSLYDDTFQPDGQNWVMNADGSDRHAITDTLWEDSMPLYIP 638
Query: 494 K 494
K
Sbjct: 639 K 639
>gi|158339964|ref|YP_001521134.1| WD-40-like beta propeller repeat-containing protein [Acaryochloris
marina MBIC11017]
gi|158310205|gb|ABW31820.1| WD40-like Beta Propeller, putative [Acaryochloris marina MBIC11017]
Length = 344
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 138/329 (41%), Gaps = 45/329 (13%)
Query: 301 FRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAK 360
F GE + I + S K L P +SPDG + F D + + +
Sbjct: 35 FTGEQDKNNRDIFLMTADGSNRKRLTTHPGEDWSPVWSPDGTRLAFISDRNGQSDLYLIN 94
Query: 361 SDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNN 419
DGS+ L + +WSP +H+ + S Q +I ++ +
Sbjct: 95 LDGSQLTRLTSHAARDEDPAWSPDSQHITFVSKRDANQQHPYNTEIYLLNIK-------- 146
Query: 420 REEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL 479
++K LT E G ++ PS SPDG+ +VF + +LF++ EF +QL
Sbjct: 147 ----DSEIKRLT-EHVGEDSSPSWSPDGQQIVFSRKIQDNADLFLMTPEGTEF----KQL 197
Query: 480 TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE----G 535
TD P D WSP G I F+S R N NV+ LYVI DGS L+R+ PE G
Sbjct: 198 TDDPNDDWNADWSPDGQQIVFTSGRSN--NVD---LYVINADGSNLKRL-TQDPEDENQG 251
Query: 536 SGDVDRERINHVCFSADGEWLLFT-----------ANLGAVMAEPVSWPNQ----FQPYG 580
RI ++ S + +W L+T N A+ PN F+
Sbjct: 252 RWSPSGHRIAYISLSQN-QWDLYTILPNGTGRTRVTNDDALELAFDWLPNSNKILFESKD 310
Query: 581 DLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+Y + GS +++T N ++G+P W P
Sbjct: 311 GIYQANVIGSKKQQMTDNP-KDGSPTWKP 338
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 28/150 (18%)
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI--HVAGPE 534
++LT P D P WSP G +AF S+R+ + LY+I DGS L R+ H A
Sbjct: 57 KRLTTHPGEDWSPVWSPDGTRLAFISDRNGQSD-----LYLINLDGSQLTRLTSHAA--- 108
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG-DLYVVKLDGSGLR 593
R +S D + + F + A NQ PY ++Y++ + S ++
Sbjct: 109 --------RDEDPAWSPDSQHITFVSKRDA---------NQQHPYNTEIYLLNIKDSEIK 151
Query: 594 RLTWNGYENGTPAWHPGNQLDLGKLRLEDD 623
RLT + E+ +P+W P Q + +++D+
Sbjct: 152 RLTEHVGEDSSPSWSPDGQQIVFSRKIQDN 181
>gi|297171859|gb|ADI22848.1| periplasmic component of the Tol biopolymer transport system
[uncultured nuHF2 cluster bacterium HF0500_31B05]
Length = 848
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 138/590 (23%), Positives = 222/590 (37%), Gaps = 89/590 (15%)
Query: 59 IAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKS 118
+AF+S R+ + IY S + + +++ F+S ++ +I
Sbjct: 89 LAFVSNRAFNNEIYTMNGDGSGVQRMTEHEAVDGSPAWAPDGSRIAFVSDRDENLEI--- 145
Query: 119 WSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVF 178
YS D + TRLT + D P+ S G+ + S SR E + + D
Sbjct: 146 ----YSVDTASGATTRLTNHEADDLEPAWSPDGRQLLFVS--SRSGNAEIYAADAD---- 195
Query: 179 QESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSF--PENLEFLGFPIAPT 236
+P G P+WS D T + DG ++ +S PE I P
Sbjct: 196 -GGNPVNVSTHEATDGSPSWSPDGTTIAYTSDRDGNSDLYLMSAHAPE--------IEPV 246
Query: 237 RVT-PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEF 295
+T FTP+ D ++L + R N EIY + + P A F
Sbjct: 247 NLTYDSAFDGFTPSWSPDSEQLTFVSNRSGNN--DFEIYSMFVQPQ-RFLEELDQAG--F 301
Query: 296 IGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRL-----NGSFPSFSPDGGLIVFNHDF 350
+ R + + S + + L N FP++SPD I F D
Sbjct: 302 PAWSRNGNRLAVVAQGAVNKDIFVSDADGIEIDNLTTDAANERFPAWSPDASAIAFTSDR 361
Query: 351 ELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVS 409
+ N I + DG + LI D ++ WSP E + + + + + + R
Sbjct: 362 DGNDEIYLMSPDGMVPFELITDAANDFDPVWSPNESTIGFVTD----RDGNEEIYLVRSG 417
Query: 410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN 469
+ EE I E N+ + SPDG LVF S R G+ +++L +
Sbjct: 418 AE---------EE-----AINLTENAANDRDFAWSPDGDRLVFVSDRDGNDEIYIL-TLA 462
Query: 470 GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH 529
+ + +LT+ D P+WSP IAF+S+R LY ++ D + I
Sbjct: 463 DTTDTSLLRLTNNTQRDGDPTWSPDAKEIAFTSDRDG-----GVDLYTLRADAASSEAIR 517
Query: 530 VAGPEGSGD--VDRERINHVCFSAD--GEWLLFTANLGAVMA-----------EPVSWPN 574
+ +GS D V + F +D G+ +++ + A P +P+
Sbjct: 518 LT-EDGSVDDPVWSPNATRIAFVSDRTGDREIYSIDADGGTAVNLSDHPGEDYAPTWFPD 576
Query: 575 ----------QFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP-GNQL 613
QP DLY ++ DG + RLT N E P+W P G QL
Sbjct: 577 GSLLAFVSNRDGQP--DLYRMERDGDEVTRLTENEDEEDAPSWSPSGLQL 624
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 79/311 (25%), Positives = 124/311 (39%), Gaps = 65/311 (20%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDG--SKRWTLIKDRTAFYNSWSPTEKHVIYTST 392
P++SPD I F D + + ++D S+ L +D + WSP + + S
Sbjct: 482 PTWSPDAKEIAFTSDRDGGVDLYTLRADAASSEAIRLTEDGSVDDPVWSPNATRIAFVSD 541
Query: 393 GPIFQSERATVQI-----ARVSFQLDPSDD---------------NNREEIPC------- 425
+R I V+ P +D +NR+ P
Sbjct: 542 ---RTGDREIYSIDADGGTAVNLSDHPGEDYAPTWFPDGSLLAFVSNRDGQPDLYRMERD 598
Query: 426 --DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP 483
+V LT+ E +A PS SP G LV+ SG SG+ N+ ++ G R++TD P
Sbjct: 599 GDEVTRLTENEDEEDA-PSWSPSGLQLVYASGSSGNLNIQLI----GSQGLVPRRVTDHP 653
Query: 484 WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRER 543
D P+WS GD IA+ SNR + +YV K D L ++ + D
Sbjct: 654 GADVCPTWSSSGDRIAYMSNRDG-----NYEIYVSKQDSLELAPTNLTSAPAADD----- 703
Query: 544 INHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENG 603
+ ++ LLF +N ++Y++ +GS L RLT N E+
Sbjct: 704 -RYPAWAPSRGELLFVSNRDG--------------NNEIYLMDANGSNLVRLTDNPSEDL 748
Query: 604 TPAWHP-GNQL 613
W P G+Q+
Sbjct: 749 FATWSPDGSQV 759
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 99/465 (21%), Positives = 170/465 (36%), Gaps = 109/465 (23%)
Query: 55 QDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA---RNNKLFFISAHEQ 111
+ TI F+++R G+ IY R G+ + + ++ + +DR A ++L F+S +
Sbjct: 395 NESTIGFVTDRDGNEEIYLVRSGAEEEAI--NLTENAANDRDFAWSPDGDRLVFVSDRDG 452
Query: 112 PDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHEL 171
D+I+ L D + RLT D P+ S K IA S R + + L
Sbjct: 453 NDEIY----ILTLADTTDTSLLRLTNNTQRDGDPTWSPDAKEIAFTS--DRDGGVDLYTL 506
Query: 172 NTDIVVFQESDPNKRVIVCERGGW--PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFL 229
D ++ + + E G P WS ++T G I+ +
Sbjct: 507 RADAA------SSEAIRLTEDGSVDDPVWSPNATRIAFVSDRTGDREIYSIDADGG---- 556
Query: 230 GFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFV 289
A PG + P F DG LA + R
Sbjct: 557 ---TAVNLSDHPG-EDYAPTWFPDGSLLAFVSNR-------------------------- 586
Query: 290 SANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHD 349
+GQ + +E V L PS+SP G +V+
Sbjct: 587 -----------------DGQPDLYRMERDGDEVTRLTENEDEEDAPSWSPSGLQLVYASG 629
Query: 350 FELNAGIKIAKSDGSKRWTLIKDRTAFYN------SWSPTEKHVIYTSTG----PIFQSE 399
N I++ S G L+ R + +WS + + Y S I+ S+
Sbjct: 630 SSGNLNIQLIGSQG-----LVPRRVTDHPGADVCPTWSSSGDRIAYMSNRDGNYEIYVSK 684
Query: 400 RATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGH 459
+ ++++A + LT ++ +P+ +P L+F S R G+
Sbjct: 685 QDSLELAPTN--------------------LTSAPAADDRYPAWAPSRGELLFVSNRDGN 724
Query: 460 KNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
++++DA NG ++ +LTD P D +WSP G + F+S+R
Sbjct: 725 NEIYLMDA-NG---SNLVRLTDNPSEDLFATWSPDGSQVVFASDR 765
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 78/191 (40%), Gaps = 38/191 (19%)
Query: 344 IVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHV-----------IYTS 391
I F D + + I SDG +R+ L + WSP + IYT
Sbjct: 45 IAFTSDRDGDFDIYAMSSDGEERFQLTRHEAMDGEPDWSPDGLRLAFVSNRAFNNEIYTM 104
Query: 392 TGPIFQSERATVQIA------------RVSFQLDPSDDNNREEIPCDVKI-----LTKEE 434
G +R T A R++F D D N E D LT E
Sbjct: 105 NGDGSGVQRMTEHEAVDGSPAWAPDGSRIAFVSDR--DENLEIYSVDTASGATTRLTNHE 162
Query: 435 TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE-FNGDIRQLTDGPWIDTMPSWSP 493
++ P+ SPDG+ L+F S RSG+ ++ DA G N + TDG PSWSP
Sbjct: 163 -ADDLEPAWSPDGRQLLFVSSRSGNAEIYAADADGGNPVNVSTHEATDGS-----PSWSP 216
Query: 494 KGDLIAFSSNR 504
G IA++S+R
Sbjct: 217 DGTTIAYTSDR 227
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 112/273 (41%), Gaps = 50/273 (18%)
Query: 18 GFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPG 77
G D++++++ +A RLT+ S++ + IAF+S+R+G IY
Sbjct: 500 GVDLYTLRA---DAASSEAIRLTEDGSVDDPVWSPNAT--RIAFVSDRTGDREIYSIDAD 554
Query: 78 SSKTELLPSIPCSLFHDRPVARNNKLFFISAHE-QPDQIFKSWSALYSTDLKASKFTRLT 136
L P + + L F+S + QPD LY + + TRLT
Sbjct: 555 GGTAVNLSDHPGEDYAPTWFPDGSLLAFVSNRDGQPD--------LYRMERDGDEVTRLT 606
Query: 137 PYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVI------VC 190
+ +PS S SG + AS G LN ++ Q P +RV VC
Sbjct: 607 ENEDEEDAPSWSPSGLQLVYAS-------GSSGNLNIQLIGSQGLVP-RRVTDHPGADVC 658
Query: 191 ERGGWPTW--SGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVT-PPGVHCFT 247
PTW SGD Y + DG + I+ VS ++LE +APT +T P
Sbjct: 659 -----PTWSSSGDRIAYMSNR--DGNYEIY-VSKQDSLE-----LAPTNLTSAPAADDRY 705
Query: 248 PA-AFHDGKRLAVATRRKNRNFRHIEIYDLTLN 279
PA A G+ L V+ R N EIY + N
Sbjct: 706 PAWAPSRGELLFVSNRDGNN-----EIYLMDAN 733
>gi|295841255|dbj|BAJ07029.1| WD40-like beta propeller protein [uncultured bacterium]
Length = 328
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 134/308 (43%), Gaps = 45/308 (14%)
Query: 307 EGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFN-HDFELNAGIKIAKSDGSK 365
+G+S I + + + L S P++SPDG I + D E N I + K+DGS
Sbjct: 61 DGESEIYSVNADGTALTRLTHDEERLSKPAWSPDGKSIAYVVTDEEFNVDIYLMKADGSN 120
Query: 366 RWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQS-ERATVQIARVSFQLDPSDDNNREEI 423
L DR +W PT ++++S + + E F++ D N +
Sbjct: 121 PARLTTDRWVDTEPAWDPTGGSIVFSSDRDSYLNIEDGKTYEMVYEFEIYVMDANGSGQT 180
Query: 424 PCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ--LTD 481
+ G + P+ SPDG + F+S R + ++++DA RQ LT+
Sbjct: 181 NL------TDSPGWDTAPAWSPDGGQIAFQSSRDENPEIYMMDADGS------RQVNLTN 228
Query: 482 GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDR 541
P D P+WSP G AF S+R F++YV++ DG+GL ++ S D D
Sbjct: 229 HPEDDAAPAWSPDGSKTAFHSDRTG-----VFNIYVMETDGTGLVQL-----TSSPDWDI 278
Query: 542 ERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYE 601
+ ++ DG+ + F + ++YV+ DGS RLT++G
Sbjct: 279 QP----AWAPDGQHIAFYSGQEGNF--------------EIYVMNADGSCQMRLTYHGDF 320
Query: 602 NGTPAWHP 609
+G P W P
Sbjct: 321 DGFPDWRP 328
>gi|294633938|ref|ZP_06712495.1| tat pathway signal sequence domain-containing protein [Streptomyces
sp. e14]
gi|292830190|gb|EFF88542.1| tat pathway signal sequence domain-containing protein [Streptomyces
sp. e14]
Length = 646
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 148/622 (23%), Positives = 233/622 (37%), Gaps = 102/622 (16%)
Query: 30 NAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPC 89
N +E RL+ + + +A V + F SER+G R + + P +
Sbjct: 71 NVDGTNERRLSQNAAYDHHAT-VSADGAWVYFTSERTGDGNSCLYRAAVDGSNVQPLVVD 129
Query: 90 SLFHD--RPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVV------ 141
S +D P K+ F+S + + ++ DL+ T LT +
Sbjct: 130 SAMNDWAVPSPDGTKVAFVSTRSADRR-----TQIWLLDLRTKALTDLTGTAALAGDPAG 184
Query: 142 ---DYSPSVSYSGKFIAVASYESRPWPGEF------HELNTDIVVFQESDPNKRVIVCER 192
+ PS S G++IA +S + W G H I V + R +
Sbjct: 185 PDGHFRPSWSPDGQWIAFSSDRNTVWRGHGNGTGWEHTQELSIYVIRPDGTGFRQVASRD 244
Query: 193 G---GWPTWSGD-STIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTP 248
G G P WS D S I F+ + W R PE++ IA +++ V
Sbjct: 245 GYCQGSPKWSPDGSRIVFYELTVEDTWGAHR---PEDIG-----IAESQIVSVDVASGAR 296
Query: 249 AAFHDGKRLAVATRRKNRNFRHIEI-YDLTLNPNFHHYNPFVSANSEFIGYH-RFRGEST 306
G L VA + EI Y + P+ +VS + R +
Sbjct: 297 TVHTSGPNLKVAPQY----VSSTEIGYLVKGGPD--EGLAYVSGTLPSVKRSLRSPVWTP 350
Query: 307 EGQSTIPHLEPVASPVKELRML--------RLNGSFPSFSPDGGLIVFNHDFELNAGIKI 358
+G+S I + + + R FP+ S DG L + N N+ I
Sbjct: 351 DGRSVIYEKPDYTTRALDAPLYSWDADWDYRFCDVFPALSKDGRLAITNKQLG-NSSIVT 409
Query: 359 AKSDGSKRWTLIKDRT--------------AFYNSWSPTEKHVIYTSTGPIFQSERATVQ 404
K+DG+ + + AF +WS K + + G T
Sbjct: 410 MKADGTDQKVVFDTAASGLDPALVAKGLAGAFRPTWSHDAKWIAFGVGGWFQTRATNTAV 469
Query: 405 IARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKN-LF 463
+ RV PSD ++ E +LT T N FPS S DG +V+R G +N L
Sbjct: 470 LVRV-----PSDGSSYE-------VLTDGST-NAGFPSYSEDGNKIVYRVW--GQENGLR 514
Query: 464 VLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS 523
VLD + D +P WS G LI F+ R + N F + IKPDG+
Sbjct: 515 VLDLKTRTTTVLTTE------SDNLPDWSWDGKLILFT-RRTSATN---FDVCTIKPDGT 564
Query: 524 GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLY 583
GL+ + +G + H ++ DG +L+ + + E + + FQPYG ++
Sbjct: 565 GLKVLTSSGANDA---------HAVWNYDGR-ILYNSGMYGFREEAALYDDTFQPYGQIF 614
Query: 584 VVKLDGSGLRRLTWNGYENGTP 605
+ DGS R LT + +E+ P
Sbjct: 615 SMNADGSDKRMLTDSQWEDSMP 636
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 24/195 (12%)
Query: 442 SCSPDGKFLVFRSGRSGHKN-LFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
+ S DG ++ F S R+G N AV+G +++ L ++ SP G +AF
Sbjct: 91 TVSADGAWVYFTSERTGDGNSCLYRAAVDGS---NVQPLVVDSAMNDWAVPSPDGTKVAF 147
Query: 501 SSNRHNPDNVEAFSL-----YVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW 555
S R + + L + G+ AGP+G +S DG+W
Sbjct: 148 VSTRSADRRTQIWLLDLRTKALTDLTGTAALAGDPAGPDGH--------FRPSWSPDGQW 199
Query: 556 LLFTANLGAVM---AEPVSWPNQFQPYGDLYVVKLDGSGLRRL-TWNGYENGTPAWHP-G 610
+ F+++ V W + + +YV++ DG+G R++ + +GY G+P W P G
Sbjct: 200 IAFSSDRNTVWRGHGNGTGWEHTQEL--SIYVIRPDGTGFRQVASRDGYCQGSPKWSPDG 257
Query: 611 NQLDLGKLRLEDDIG 625
+++ +L +ED G
Sbjct: 258 SRIVFYELTVEDTWG 272
>gi|350562945|ref|ZP_08931768.1| Tol-Pal system beta propeller repeat protein TolB
[Thioalkalimicrobium aerophilum AL3]
gi|349779811|gb|EGZ34152.1| Tol-Pal system beta propeller repeat protein TolB
[Thioalkalimicrobium aerophilum AL3]
Length = 442
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 118/279 (42%), Gaps = 48/279 (17%)
Query: 351 ELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVS 409
E N + ++ SDG T+++ R + WSP +H+ Y S F++ R+ +
Sbjct: 184 ERNYSLDVSDSDGHNPRTILRSRMPIMSPRWSPDGRHIAYVS----FEAGRSIIV----- 234
Query: 410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN 469
L D + RE + E G N+ P SPDG+ + + G NL++++ N
Sbjct: 235 --LQSLDGSQRE--------VLAEFNGINSTPVWSPDGRQMAMTLSKDGSANLYIMNLAN 284
Query: 470 GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY------------- 516
+ +RQ+T+ P IDT PSWSP+GD + F+S+R + L
Sbjct: 285 RQ----LRQVTNHPAIDTEPSWSPEGDALYFNSDRRGQPQIFKLDLATNVVTRVSFEGRY 340
Query: 517 ----VIKPDGSGLRRIHVAGPEGSG--DVDRERINHVCFSADGEWLLFTANLGAVMAEPV 570
++ P+G L +H G D+ V ++ E F N ++ +
Sbjct: 341 NASPMVSPNGRHLAMVHANNGFNIGIMDLSNGDFRQVTRTSLAESPSFAPN-----SDML 395
Query: 571 SWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ + G+L V+ +DG + L + PAW P
Sbjct: 396 VYATNNRGRGELAVISVDGRASQVLRVQDGQVREPAWGP 434
>gi|58532048|emb|CAE05101.3| OSJNBa0009K15.21 [Oryza sativa Japonica Group]
gi|125589699|gb|EAZ30049.1| hypothetical protein OsJ_14105 [Oryza sativa Japonica Group]
Length = 139
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 50/65 (76%)
Query: 545 NHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGT 604
NH FS+D + L+FT++ AV AEPVS P+ +QPYG++Y V +DGS +RRLT N +E+GT
Sbjct: 33 NHPWFSSDSKSLVFTSDYAAVSAEPVSNPHHYQPYGEIYTVDIDGSNIRRLTHNSFEDGT 92
Query: 605 PAWHP 609
P+W P
Sbjct: 93 PSWTP 97
>gi|221196873|ref|ZP_03569920.1| WD40 domain protein beta Propeller [Burkholderia multivorans CGD2M]
gi|221203543|ref|ZP_03576562.1| WD40 domain protein beta Propeller [Burkholderia multivorans CGD2]
gi|221177477|gb|EEE09905.1| WD40 domain protein beta Propeller [Burkholderia multivorans CGD2]
gi|221183427|gb|EEE15827.1| WD40 domain protein beta Propeller [Burkholderia multivorans CGD2M]
Length = 640
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 125/297 (42%), Gaps = 43/297 (14%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRT-------------- 374
R FP S DG +V+ + + I +A +D S + T
Sbjct: 369 RFVDVFPQLSRDGKSLVYTEK-AVGSSIVVADTDFSHARHIYDPATSGLDPKLVAMGLAG 427
Query: 375 AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE 434
AF +WSP ++ V + F +IAR+ + D S N + EI D K
Sbjct: 428 AFQPTWSPDKQWVAFGVGSWFFTRAHMPGRIARI--RADGSM-NGKPEILTDGK------ 478
Query: 435 TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
N FPS SPDG +V+R K L +LD + LT P D +P WSP
Sbjct: 479 -ENAGFPSYSPDGTRIVYRVWSETDKGLRILDLNTRK----TMVLTTEP--DNLPGWSPD 531
Query: 495 GDLIAFSSNRHNPDNVEA--FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD 552
G I F+ NP++ F +Y IKPDG+ +RR+ P G+ H ++ D
Sbjct: 532 GTRIVFTRKEVNPNDANKFHFDVYTIKPDGTDVRRLT---PPGANQA------HATWTWD 582
Query: 553 GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G + +++ E + + FQP G +V+ DGS +T +E+ P + P
Sbjct: 583 GR-IAYSSGEYGFRDELSLYDDTFQPDGQNWVMNADGSDRHAITDTLWEDSMPLYIP 638
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 94/185 (50%), Gaps = 26/185 (14%)
Query: 442 SCSPDGKFLVFRSGRS--GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG-DLI 498
S SPDGK++VF S R GH +L+ + ++G +++LTD + + P D+I
Sbjct: 74 SFSPDGKWVVFTSERDGLGHASLYRV-RIDGT---GLQRLTDWTGVSDAAVYDPADPDVI 129
Query: 499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV--DRERINHV---CFSADG 553
AF S+R + D +++ + L + +GD+ D ++ + +S DG
Sbjct: 130 AFVSSRRDNDTWGTTNIWTLNLKTGALHNV-------TGDIRFDPDKPHSFFRPSWSPDG 182
Query: 554 EWLLFTANLGAVMAE---PVSWPNQFQPYGDLYVVKLDGSGLRRLTWN-GYENGTPAW-H 608
+W+ F+++LG PV W + +Y ++ DG+G R++ GY +G+P+W +
Sbjct: 183 KWIAFSSDLGTEWRGHNLPVGWERTQETA--IYEIRPDGTGFRQIAARAGYADGSPSWSN 240
Query: 609 PGNQL 613
G Q+
Sbjct: 241 DGKQI 245
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 79/193 (40%), Gaps = 37/193 (19%)
Query: 356 IKIAKSDGSKRWTLIKDRT-AFYNSWSPTEKHVIYTST------GPIFQSERATVQIARV 408
+ IA +DGS LI ++ S+SP K V++TS +++ + R+
Sbjct: 50 LYIANADGSDEHRLIASGGFDYHGSFSPDGKWVVFTSERDGLGHASLYRVRIDGTGLQRL 109
Query: 409 SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV 468
+ SD + DV N+ + G N++ L+
Sbjct: 110 TDWTGVSDAAVYDPADPDVIAFVSSRRDNDTW-----------------GTTNIWTLNLK 152
Query: 469 NGEFN---GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR------HNP----DNVEAFSL 515
G + GDIR D P PSWSP G IAFSS+ HN + + ++
Sbjct: 153 TGALHNVTGDIRFDPDKPHSFFRPSWSPDGKWIAFSSDLGTEWRGHNLPVGWERTQETAI 212
Query: 516 YVIKPDGSGLRRI 528
Y I+PDG+G R+I
Sbjct: 213 YEIRPDGTGFRQI 225
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 28/110 (25%)
Query: 494 KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADG 553
KGDL+ + R P E LY+ DGS R+ SG D H FS DG
Sbjct: 35 KGDLLLY---RIGPTTSE---LYIANADGSDEHRLIA-----SGGFDY----HGSFSPDG 79
Query: 554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT-WNGYEN 602
+W++FT+ + + LY V++DG+GL+RLT W G +
Sbjct: 80 KWVVFTSERDGLG------------HASLYRVRIDGTGLQRLTDWTGVSD 117
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 72/181 (39%), Gaps = 38/181 (20%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYT 390
N FPS+SPDG IV+ E + G++I + K L + WSP +++T
Sbjct: 480 NAGFPSYSPDGTRIVYRVWSETDKGLRILDLNTRKTMVLTTEPDNL-PGWSPDGTRIVFT 538
Query: 391 STGPIFQSERATVQIARVSFQLDPSDDN-------NREEIPCDVKILTKEETGNNAFPSC 443
+++P+D N + DV+ LT N A +
Sbjct: 539 RK------------------EVNPNDANKFHFDVYTIKPDGTDVRRLTP-PGANQAHATW 579
Query: 444 SPDGKFLVFRSGRSGHKNLFVL-------DAVNGEFNG---DIRQLTDGPWIDTMPSWSP 493
+ DG+ + + SG G ++ L D N N D +TD W D+MP + P
Sbjct: 580 TWDGR-IAYSSGEYGFRDELSLYDDTFQPDGQNWVMNADGSDRHAITDTLWEDSMPLYIP 638
Query: 494 K 494
K
Sbjct: 639 K 639
>gi|322418108|ref|YP_004197331.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Geobacter sp. M18]
gi|320124495|gb|ADW12055.1| Tol-Pal system beta propeller repeat protein TolB [Geobacter sp.
M18]
Length = 406
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 123/293 (41%), Gaps = 62/293 (21%)
Query: 342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTA-FYNSWSPTEKHVIYTSTGP----IF 396
G I + N I + DG L + + Y ++P+ K +IYTS ++
Sbjct: 145 GKIAYVSKISGNKEIFLMDYDGRNPQRLTNNGSINLYPDFAPSGKELIYTSYKKGNPDLY 204
Query: 397 QSERATVQIARVS-----------------FQLDPSDDNNRE--EIPCDVKILTKEETGN 437
+ E T AR+S L S D N E +I D K + + T N
Sbjct: 205 RRELFTGLEARISSRSGLNAMGVFSPDGSRVALVLSKDGNSEVYQIARDGKEVARL-TKN 263
Query: 438 NAF---PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
+A PS SPDG + F S R G LFV+DA NG G++R+LT + P WSPK
Sbjct: 264 HAIDISPSWSPDGSRVAFVSDRLGKPQLFVMDA-NG---GNVRRLTTSGAYNVTPRWSPK 319
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
GD I ++ F +Y I PDGS ++ AG H +S DG
Sbjct: 320 GDRIVYARKEG------GFQIYAINPDGSQDTQLTSAGSN----------EHPRYSPDGR 363
Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
+++F++ LY+++ DG+G R++ N +N P W
Sbjct: 364 FIVFSSTRDGGEG--------------LYLMRADGTGQTRISPNKAQNTHPTW 402
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 33/181 (18%)
Query: 318 VASPVKELRMLRLNGSF---PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRT 374
+A KE+ L N + PS+SPDG + F D + + ++G L +
Sbjct: 250 IARDGKEVARLTKNHAIDISPSWSPDGSRVAFVSDRLGKPQLFVMDANGGNVRRLTT--S 307
Query: 375 AFYN---SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT 431
YN WSP ++Y FQ + ++P + + LT
Sbjct: 308 GAYNVTPRWSPKGDRIVYARKEGGFQI-----------YAINPDGSQDTQ--------LT 348
Query: 432 KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491
G+N P SPDG+F+VF S R G + L+++ A + G R ++ +T P+W
Sbjct: 349 --SAGSNEHPRYSPDGRFIVFSSTRDGGEGLYLMRA---DGTGQTR-ISPNKAQNTHPTW 402
Query: 492 S 492
S
Sbjct: 403 S 403
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 42/177 (23%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497
N +P +P GK L++ S + G+ +L+ + F G +++ ++ M +SP G
Sbjct: 179 NLYPDFAPSGKELIYTSYKKGNPDLYRREL----FTGLEARISSRSGLNAMGVFSPDGSR 234
Query: 498 IAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVC-----FSAD 552
+A ++ V Y I DG +V R NH +S D
Sbjct: 235 VALVLSKDGNSEV-----YQIARDGK--------------EVARLTKNHAIDISPSWSPD 275
Query: 553 GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G + F ++ + +P L+V+ +G +RRLT +G N TP W P
Sbjct: 276 GSRVAFVSDR---LGKP-----------QLFVMDANGGNVRRLTTSGAYNVTPRWSP 318
>gi|398385341|ref|ZP_10543364.1| periplasmic component of the Tol biopolymer transport system
[Sphingobium sp. AP49]
gi|397720685|gb|EJK81239.1| periplasmic component of the Tol biopolymer transport system
[Sphingobium sp. AP49]
Length = 644
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 124/535 (23%), Positives = 196/535 (36%), Gaps = 106/535 (19%)
Query: 122 LYSTDLKASKFTRLTPYGVVD---------YSPSVSYSGKFIAVASYESRPWPGE----- 167
++ D+K+ +LT G V + P+ S GK+IA +S W G
Sbjct: 157 IWVMDVKSGAMKQLTGIGDVRGKADSPDCYFRPAWSPDGKWIAFSSDRDTSWRGHDDGRG 216
Query: 168 -FHELNTDIVVFQESDPNKRVIVCERG---GWPTWSGDST-IYFHRQADDGWWSIFRVSF 222
H I V + R + +G G P WS D I F+ + W R +
Sbjct: 217 WEHTQELSIYVIRADGTGFRQVASRKGWCLGSPAWSPDGKRIAFYELTTEATWGARRPEW 276
Query: 223 PENLEF------------------LGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRK 264
+E G +AP ++ + +G +A
Sbjct: 277 IGRVESQIVSVDVATGARIEHTNSAGLKVAPHFLSNDEIGYLMKGGPEEG----IAYTSG 332
Query: 265 NRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKE 324
F+ + +P SA+ + + Y E + P L+P+ +
Sbjct: 333 RPGFKRAGLR-----------SPRWSADGKSVFY-----EVVAFRPVRPLLKPLYGWDAD 376
Query: 325 LRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRT---------- 374
++ FP S G ++ F N+ I K DGS R +
Sbjct: 377 YEYRHMD-VFPILSRQG-MLAFTEKQLGNSSIVSMKPDGSDRRVVFDASNKGLNPEMVKK 434
Query: 375 ----AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL 430
AF +WSP + + + + A + RV D + E D ++
Sbjct: 435 GLSGAFQPAWSPDGEWIAFGMGTWFAERSYAKATLMRVKA------DGSSYEALTDGRV- 487
Query: 431 TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS 490
++ FPS S DGK +VFR K L VL+ G+ IR LT +D +P
Sbjct: 488 ------HSGFPSYSADGKEIVFRVWGDDEKGLRVLNLDTGK----IRVLTTE--LDNLPG 535
Query: 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS 550
WSP G I F+ N F + I PDGS L+++ G E G H +S
Sbjct: 536 WSPDGKRIVFTRKV----NGTTFQICTIAPDGSDLQQL-THGLESDG--------HAVWS 582
Query: 551 ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTP 605
DG ++++ + E + N FQ YG +YV+ DGS + LT + +E+ P
Sbjct: 583 PDGR-IMWSGSAHGFRDEAALYDNTFQQYGQIYVMNADGSDKKMLTDSKWEDSMP 636
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 34/204 (16%)
Query: 342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSER 400
G+++ N + + A +DG+ L+ D YN + SP +I+TS ER
Sbjct: 52 GVLLMNRIAPSQSALYTAGADGAGERKLLADAAYDYNVTLSPKGDRIIFTS-------ER 104
Query: 401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHK 460
+ + L P R+ L + + ++A SPDG+ L F S R+G++
Sbjct: 105 NGDGQSDLFIAL-PDGSGIRQ--------LAQGSSMDDA-GVLSPDGRTLAFVSTRNGYR 154
Query: 461 -NLFVLDAVNGEFN-----GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP------- 507
N++V+D +G GD+R D P P+WSP G IAFSS+R
Sbjct: 155 ANIWVMDVKSGAMKQLTGIGDVRGKADSPDCYFRPAWSPDGKWIAFSSDRDTSWRGHDDG 214
Query: 508 ---DNVEAFSLYVIKPDGSGLRRI 528
++ + S+YVI+ DG+G R++
Sbjct: 215 RGWEHTQELSIYVIRADGTGFRQV 238
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 43/214 (20%)
Query: 442 SCSPDGKFLVFRSGRSG--HKNLFV-LDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
+ SP G ++F S R+G +LF+ L +G IRQL G +D SP G +
Sbjct: 90 TLSPKGDRIIFTSERNGDGQSDLFIALPDGSG-----IRQLAQGSSMDDAGVLSPDGRTL 144
Query: 499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCF-----SADG 553
AF S R N +++V+ ++++ G GDV + + C+ S DG
Sbjct: 145 AFVSTR----NGYRANIWVMDVKSGAMKQL-----TGIGDVRGKADSPDCYFRPAWSPDG 195
Query: 554 EWLLFTANLGAVMAEPVSWPNQFQPYG-------DLYVVKLDGSGLRRL-TWNGYENGTP 605
+W+ F+++ SW G +YV++ DG+G R++ + G+ G+P
Sbjct: 196 KWIAFSSD------RDTSWRGHDDGRGWEHTQELSIYVIRADGTGFRQVASRKGWCLGSP 249
Query: 606 AWHP-GNQLDLGKLRLEDDIGDKLRGQFDEPLWI 638
AW P G ++ +L E G + P WI
Sbjct: 250 AWSPDGKRIAFYELTTEATWGAR------RPEWI 277
>gi|242067253|ref|XP_002448903.1| hypothetical protein SORBIDRAFT_05g001167 [Sorghum bicolor]
gi|241934746|gb|EES07891.1| hypothetical protein SORBIDRAFT_05g001167 [Sorghum bicolor]
Length = 98
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 57/98 (58%), Gaps = 11/98 (11%)
Query: 1 MEPKGTIVFTTVGRPYYGFDVFSI-----------KSPFVNAPKFHEHRLTDGTSINFNA 49
MEP GTIVF +VG +GFDVFSI V+A + E T+G S+NFNA
Sbjct: 1 MEPTGTIVFASVGVTNFGFDVFSIVVLTPASAEAKAEAGVSAQELDEQHHTNGVSVNFNA 60
Query: 50 QFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSI 87
QF D + F+SER+G+ ++ +RPGS + + L ++
Sbjct: 61 QFADDAGDAVVFVSERTGAASLFLSRPGSERPKPLSAV 98
>gi|229160030|ref|ZP_04288034.1| WD40-like Beta Propeller [Bacillus cereus R309803]
gi|228623467|gb|EEK80289.1| WD40-like Beta Propeller [Bacillus cereus R309803]
Length = 298
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 124/270 (45%), Gaps = 52/270 (19%)
Query: 344 IVFNHDFELNAGIKIAKSDGSKRWTLIKD-RTAFYNSWSPTEKHVIYTSTGPIFQSERAT 402
I F+ + + N I + DGS + + + F +WSP + + ++S
Sbjct: 35 IAFSSNRDGNFEIYVMNPDGSNQTNITNNPDNDFEPTWSPDGQKIAFSS----------- 83
Query: 403 VQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNL 462
++ + + +D +N+ I ++ P+ SPDG+ + F S R G+ +
Sbjct: 84 IRDGNIEIYVMNADGSNQTNI--------TNNPNDDLEPAWSPDGQKIAFSSFRDGNSEI 135
Query: 463 FVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG 522
+V++ V+G + +LT+ P D+ P+WSP G IAFSSNR+ P +YV+ +G
Sbjct: 136 YVMN-VDGT---NQTRLTNNPASDSKPTWSPDGQKIAFSSNRNGP-----LEIYVMNANG 186
Query: 523 SGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDL 582
S I P+G D E +S DG+ + FT +V E + ++
Sbjct: 187 SNQTNI-TNNPDG----DFEP----AWSPDGQKIAFT----SVRNENL----------EI 223
Query: 583 YVVKLDGSGLRRLTWNGYENGTPAWHPGNQ 612
YV+ +DGS RLT + +N P W P Q
Sbjct: 224 YVINVDGSNQTRLTNSQGDNSLPTWSPDGQ 253
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 120/276 (43%), Gaps = 52/276 (18%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD-RTAFYNSWSPTEKHVIYTSTG 393
P++SPDG I F+ + N I + +DGS + + + +WSP + + ++S
Sbjct: 70 PTWSPDGQKIAFSSIRDGNIEIYVMNADGSNQTNITNNPNDDLEPAWSPDGQKIAFSS-- 127
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453
F+ + + + V D N+ + + +K P+ SPDG+ + F
Sbjct: 128 --FRDGNSEIYVMNV-------DGTNQTRLTNNPASDSK--------PTWSPDGQKIAFS 170
Query: 454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF 513
S R+G ++V++A NG +I DG D P+WSP G IAF+S R+ E
Sbjct: 171 SNRNGPLEIYVMNA-NGSNQTNITNNPDG---DFEPAWSPDGQKIAFTSVRN-----ENL 221
Query: 514 SLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP 573
+YVI DGS R+ + + S +S DG+ + F++
Sbjct: 222 EIYVINVDGSNQTRLTNSQGDNS---------LPTWSPDGQKIAFSSTRNGNR------- 265
Query: 574 NQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
++YV+ DGS +T N + PAW P
Sbjct: 266 -------EIYVMNADGSNQTNITNNPAADSEPAWSP 294
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 123/269 (45%), Gaps = 43/269 (15%)
Query: 236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIY----------DLTLNPNFHHY 285
T +T + F P DG+++A ++ R +IEIY ++T NPN
Sbjct: 58 TNITNNPDNDFEPTWSPDGQKIAFSSIRDG----NIEIYVMNADGSNQTNITNNPN-DDL 112
Query: 286 NPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIV 345
P S + + I + FR +G S I + + L + S P++SPDG I
Sbjct: 113 EPAWSPDGQKIAFSSFR----DGNSEIYVMNVDGTNQTRLTNNPASDSKPTWSPDGQKIA 168
Query: 346 FNHDFELNAGIKIAKSDGSKRWTLIKDRTA-FYNSWSPTEKHVIYTSTGPIFQSERATVQ 404
F+ + I + ++GS + + + F +WSP + + +TS ++E +
Sbjct: 169 FSSNRNGPLEIYVMNANGSNQTNITNNPDGDFEPAWSPDGQKIAFTS----VRNENLEIY 224
Query: 405 IARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFV 464
+ V D +N+ LT + G+N+ P+ SPDG+ + F S R+G++ ++V
Sbjct: 225 VINV-------DGSNQTR-------LTNSQ-GDNSLPTWSPDGQKIAFSSTRNGNREIYV 269
Query: 465 LDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
++A + +T+ P D+ P+WSP
Sbjct: 270 MNA----DGSNQTNITNNPAADSEPAWSP 294
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 71/327 (21%), Positives = 119/327 (36%), Gaps = 70/327 (21%)
Query: 59 IAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKS 118
IAF S R G+ IY P S + + P + F K+ F S + +I
Sbjct: 35 IAFSSNRDGNFEIYVMNPDGSNQTNITNNPDNDFEPTWSPDGQKIAFSSIRDGNIEI--- 91
Query: 119 WSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVF 178
Y + S T +T D P+ S G+ IA +S F + N++I V
Sbjct: 92 ----YVMNADGSNQTNITNNPNDDLEPAWSPDGQKIAFSS---------FRDGNSEIYVM 138
Query: 179 QESDPNKRVIVCE--RGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPT 236
N+ + PTWS D +G I+ ++ + + T
Sbjct: 139 NVDGTNQTRLTNNPASDSKPTWSPDGQKIAFSSNRNGPLEIYVMNANGSNQ--------T 190
Query: 237 RVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFI 296
+T F PA DG+++A + R ++EIY + ++
Sbjct: 191 NITNNPDGDFEPAWSPDGQKIAFTSVRN----ENLEIYVINVD----------------- 229
Query: 297 GYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGI 356
G ++ R +++G + S P++SPDG I F+ N I
Sbjct: 230 GSNQTRLTNSQGDN----------------------SLPTWSPDGQKIAFSSTRNGNREI 267
Query: 357 KIAKSDGSKRWTLIKDRTAFYN-SWSP 382
+ +DGS + + + A +WSP
Sbjct: 268 YVMNADGSNQTNITNNPAADSEPAWSP 294
>gi|294505693|ref|YP_003569754.1| TolB protein [Salinibacter ruber M8]
gi|294342132|emb|CBH22796.1| TolB protein precursor [Salinibacter ruber M8]
Length = 543
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 146/327 (44%), Gaps = 59/327 (18%)
Query: 301 FRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDF---ELNAGIK 357
F E T G + I + P S ++++ G P++SPDG I F D + N I
Sbjct: 256 FSSEDTGGDAEIYTVRPDGSNLRQVTN-SATGISPTWSPDGSRIAFTADGGGDDANDPIA 314
Query: 358 IAKSDGSKRWTL-----IKD-RTA-FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410
+ DGS + ++D R A WSP+ + ++ + +I +
Sbjct: 315 TIRPDGSDLSPVTDPADVEDGRIADVAPEWSPSGDRIAFSRDPDTTARDTTEPRI----Y 370
Query: 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG 470
+DP + R+ + + G N P+ SPDG + F S + V+ +
Sbjct: 371 TVDPDGSDLRQ-------VAEDKAIGFN--PTWSPDGSRIAF----STPADPSVIFTIRP 417
Query: 471 EFNGDIRQLTD-----GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL 525
+ + D+RQ+TD G D P+WSP G IAF S+R D +F +Y + PDGS L
Sbjct: 418 DGS-DLRQVTDRSDIDGNSGDLAPAWSPDGSRIAFQSDR---DGGSSFDIYTVDPDGSDL 473
Query: 526 RRIHVAGPEGSGDVDR-ERINHV--CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDL 582
+++ AG DR +R++ + +S DG ++F +N A P D+
Sbjct: 474 KQVTTAG-------DRDDRVDDISPAWSPDGSRIVFGSNRDG-SAVP-----------DI 514
Query: 583 YVVKLDGSGLRRLTWNGYENGTPAWHP 609
Y ++ DGS L R+T N + PAW P
Sbjct: 515 YTIRPDGSELERITNNDRLDFGPAWSP 541
>gi|238507612|ref|XP_002385007.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
gi|220688526|gb|EED44878.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
Length = 647
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 156/641 (24%), Positives = 243/641 (37%), Gaps = 137/641 (21%)
Query: 39 LTDGTSINFNAQFV-DGQDQTIAFISERSG--SPRIYQTRPGSSKTELLPSIPCSLFHDR 95
L + + +++A F DGQ I F SER+G + +Y+ R S E L + S D
Sbjct: 79 LGNNSRFDYHASFSPDGQ--WITFTSERNGDGNSDLYRCRADGSGLEKL--VATSSVEDA 134
Query: 96 PVAR--NNKLFFIS-AHEQPDQIF----KSWSALYSTDLKASKFTRLTPYGVVDYSPSVS 148
V +K+ ++S A+ ++ K+ T+L+ K P G + PS S
Sbjct: 135 GVLSPDASKVAWVSTANGYTTNVWVMDLKTGEQRNLTNLEGVKGDPTKPNGY--FRPSWS 192
Query: 149 YSGKFIAVASYESRPWPGEF------HELNTDIVVFQESDPNKRVIVCERG---GWPTWS 199
G++IA +S + W G H + V + + R I G G P WS
Sbjct: 193 PDGEWIAFSSDRNTEWRGHGNGTGWEHTQELSVYVIRPDGTDFRKIASREGWSLGSPRWS 252
Query: 200 GD-STIYFHRQADDGWW-------------SIFRVSFPENLEFL------GFPIAPTRVT 239
D S I F+ + W I V F L+ + G ++P VT
Sbjct: 253 PDGSRIIFYEITTENTWDAHRPESVASATSQIVSVDFATGLDRIQHTNGTGVKVSPQYVT 312
Query: 240 PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYH 299
+ +G HY S + G
Sbjct: 313 ADNIGYLIKGGSSEGI----------------------------HYTAESSTGTVINGTM 344
Query: 300 RFRGESTEGQSTIPHLEPVASPVKELRML--------RLNGSFPSFSPDGGLIVFNHDFE 351
R S +G+S + + E ++ R FP S G L +
Sbjct: 345 RSPSWSPDGKSVVYEKSEFEARPMEKKLYSWDPEWEYRFTDVFPDLSQQGRLAITQKQLG 404
Query: 352 LNAGIKIAKSDGSKRWTLIKD----------------RTAFYNSWSPTEKHVIYTSTGPI 395
N+ I + DG + TL+ D AF SWSP + + + G
Sbjct: 405 -NSSIVTMRPDGLDQ-TLVFDPLTQSNISSSEVGQGLAGAFQPSWSPDGEWIAF-GIGAW 461
Query: 396 FQSERATVQ--IARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453
FQS RAT + IAR D + EI + I N FPS S DG++LV+R
Sbjct: 462 FQS-RATGKGYIARAKA------DGSYHEILTNGTI-------NAGFPSYSLDGRYLVYR 507
Query: 454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF 513
+ L ++D + +R LT D +P +SP G I F+ R + N F
Sbjct: 508 VWGT-EFGLRIMDLTDKS----VRVLTTTR--DNLPFYSPDGQRIVFT-RRTSYTN---F 556
Query: 514 SLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP 573
+ I+PDGS L+ + +G + H ++ADG +L+ + + E +
Sbjct: 557 DVCTIRPDGSDLKVLTSSGANDA---------HATWTADGR-ILYASGMYGFRDEAAIYD 606
Query: 574 NQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLD 614
N FQPYG ++V+ DGS LT + +E+ + P L+
Sbjct: 607 NTFQPYGQIFVMNADGSNKTILTDSIWEDSMALYLPNEVLE 647
>gi|159897506|ref|YP_001543753.1| WD40 domain-containing protein [Herpetosiphon aurantiacus DSM 785]
gi|159890545|gb|ABX03625.1| WD40 domain protein beta Propeller [Herpetosiphon aurantiacus DSM
785]
Length = 316
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 71/125 (56%), Gaps = 16/125 (12%)
Query: 434 ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
+ G++ PS SPDG+ L F+S RSG+ L++++ ++RQLT+ P D PSWSP
Sbjct: 123 QPGDDQSPSWSPDGQQLAFQSNRSGNDELYLIN----RDGSNLRQLTNDPARDWQPSWSP 178
Query: 494 KGDLIAFSSNR--HNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSA 551
G LIAF+S+R PD LYVI+PDG GL+ + EG G R H +S
Sbjct: 179 DGSLIAFTSDRGAQTPDGWND-QLYVIQPDGQGLKYLT----EGFG-----RARHPAWSP 228
Query: 552 DGEWL 556
D + L
Sbjct: 229 DSQQL 233
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 81/172 (47%), Gaps = 26/172 (15%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L F S N+++ A ++ Q+T+ P D PSWSP G +AF
Sbjct: 86 PTWSPDGNELAFVVQDSDGFNMYISSADGS----NLFQVTNQPGDDQSPSWSPDGQQLAF 141
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
SNR D LY+I DGS LR++ D R +S DG + FT+
Sbjct: 142 QSNRSGND-----ELYLINRDGSNLRQLT---------NDPARDWQPSWSPDGSLIAFTS 187
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQ 612
+ GA P W +Q LYV++ DG GL+ LT PAW P +Q
Sbjct: 188 DRGA--QTPDGWNDQ------LYVIQPDGQGLKYLTEGFGRARHPAWSPDSQ 231
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 28/125 (22%)
Query: 489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVC 548
P+WSP G+ +AF + + F++Y+ DGS L ++ GD
Sbjct: 86 PTWSPDGNELAFVVQ-----DSDGFNMYISSADGSNLFQVT----NQPGDDQSP-----S 131
Query: 549 FSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWH 608
+S DG+ L F +N +LY++ DGS LR+LT + + P+W
Sbjct: 132 WSPDGQQLAFQSNRSG--------------NDELYLINRDGSNLRQLTNDPARDWQPSWS 177
Query: 609 PGNQL 613
P L
Sbjct: 178 PDGSL 182
>gi|347838124|emb|CCD52696.1| similar to prolyl oligopeptidase [Botryotinia fuckeliana]
Length = 688
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 93/185 (50%), Gaps = 21/185 (11%)
Query: 430 LTKEETG--NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA-VNGEFNGDIRQLTDGPWID 486
LT E G N FPS SPDG +V+R G L+ + + +G + LTD W D
Sbjct: 512 LTFGEAGVSNAGFPSYSPDGTKIVYR--ECGPAPLYCIGLRILNLADGTVTNLTD-TW-D 567
Query: 487 TMPSWSPKGDLIAFSSNRH-NPDNV---EAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRE 542
P WSP G+ I F+ H N D++ +++ +Y I P+G+GL ++ +G +
Sbjct: 568 NTPGWSPDGERIVFTRRNHLNFDDLSSTDSYDVYTIFPNGTGLTQVTTSGANDA------ 621
Query: 543 RINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
H +SADG +L+++ + E + N FQPYG + + DGS LT + +E+
Sbjct: 622 ---HAVWSADGR-ILYSSGMYGFREESPLYDNAFQPYGQIISMNFDGSNKTMLTDSMWED 677
Query: 603 GTPAW 607
P +
Sbjct: 678 SMPLY 682
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 96/211 (45%), Gaps = 47/211 (22%)
Query: 342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAF--YNSWSPTEKHVIYTSTGPIFQSE 399
G++ N + + IA +DGS L+ + +++ + ++SP K+VI+T+ ++
Sbjct: 75 GVMFMNRIAPSVSTLYIANADGSNERELLGNSSSYDYHGNFSPDGKYVIFTTE----RNG 130
Query: 400 RATVQIARVSFQLDPSDDNNREEIPC--DVKILTKEETGNNAFPSCSPDGKFLVFRSGRS 457
I RV ++D + + E P D +L SPDG L + S +
Sbjct: 131 DGQSDIYRV--KVDGTGLESLVETPSFEDAGVL-------------SPDGTTLAYVSTQG 175
Query: 458 GH-KNLFVLDAVNG-EFN--------GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP 507
N++V D G FN GD L DG + PS+SP G+ IAFSS+R+
Sbjct: 176 NFTANIWVKDLTTGVAFNLTNTPTTAGD-NALPDGHF---RPSFSPDGEWIAFSSDRNTA 231
Query: 508 ----------DNVEAFSLYVIKPDGSGLRRI 528
++ + S+Y I+P+GS ++
Sbjct: 232 WTGHSNGTGWEHTQELSVYKIRPNGSDFSQV 262
>gi|154290642|ref|XP_001545913.1| hypothetical protein BC1G_15641 [Botryotinia fuckeliana B05.10]
Length = 674
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 93/185 (50%), Gaps = 21/185 (11%)
Query: 430 LTKEETG--NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA-VNGEFNGDIRQLTDGPWID 486
LT E G N FPS SPDG +V+R G L+ + + +G + LTD W D
Sbjct: 498 LTFGEAGVSNAGFPSYSPDGTKIVYR--ECGPAPLYCIGLRILNLADGTVTNLTD-TW-D 553
Query: 487 TMPSWSPKGDLIAFSSNRH-NPDNV---EAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRE 542
P WSP G+ I F+ H N D++ +++ +Y I P+G+GL ++ +G +
Sbjct: 554 NTPGWSPDGERIVFTRRNHLNFDDLSSTDSYDVYTIFPNGTGLTQVTTSGANDA------ 607
Query: 543 RINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
H +SADG +L+++ + E + N FQPYG + + DGS LT + +E+
Sbjct: 608 ---HAVWSADGR-ILYSSGMYGFREESPLYDNAFQPYGQIISMNFDGSNKTMLTDSMWED 663
Query: 603 GTPAW 607
P +
Sbjct: 664 SMPLY 668
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 96/211 (45%), Gaps = 47/211 (22%)
Query: 342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAF--YNSWSPTEKHVIYTSTGPIFQSE 399
G++ N + + IA +DGS L+ + +++ + ++SP K+VI+T+ ++
Sbjct: 61 GVMFMNRIAPSVSTLYIANADGSNERELLGNSSSYDYHGNFSPDGKYVIFTTE----RNG 116
Query: 400 RATVQIARVSFQLDPSDDNNREEIPC--DVKILTKEETGNNAFPSCSPDGKFLVFRSGRS 457
I RV ++D + + E P D +L SPDG L + S +
Sbjct: 117 DGQSDIYRV--KVDGTGLESLVETPSFEDAGVL-------------SPDGTTLAYVSTQG 161
Query: 458 G-HKNLFVLDAVNG-EFN--------GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP 507
N++V D G FN GD L DG + PS+SP G+ IAFSS+R+
Sbjct: 162 NFTANIWVKDLTTGVAFNLTNTPTTAGD-NALPDGHF---RPSFSPDGEWIAFSSDRNTA 217
Query: 508 ----------DNVEAFSLYVIKPDGSGLRRI 528
++ + S+Y I+P+GS ++
Sbjct: 218 WTGHSNGTGWEHTQELSVYKIRPNGSDFSQV 248
>gi|169785140|ref|XP_001827031.1| hypothetical protein AOR_1_786034 [Aspergillus oryzae RIB40]
gi|83775778|dbj|BAE65898.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 647
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 153/644 (23%), Positives = 238/644 (36%), Gaps = 143/644 (22%)
Query: 39 LTDGTSINFNAQFV-DGQDQTIAFISERSG--SPRIYQTRPGSSKTELLPSIPCSLFHDR 95
L + + +++A F DGQ I F SER+G + +Y+ R S E L + S D
Sbjct: 79 LGNNSRFDYHASFSPDGQ--WITFTSERNGDGNSDLYRCRADGSGLEKL--VATSSVEDA 134
Query: 96 PVAR--NNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVD---------YS 144
V +K+ ++S + ++ DLK + LT V +
Sbjct: 135 GVLSPDASKVAWVSTANGYT------TNVWVMDLKTGEQRNLTSLEGVKGDPTKPNGYFR 188
Query: 145 PSVSYSGKFIAVASYESRPWPGEF------HELNTDIVVFQESDPNKRVIVCERG---GW 195
PS S G++IA +S + W G H + V + + R I G G
Sbjct: 189 PSWSPDGEWIAFSSDRNTEWRGHGNGTGWEHTQELSVYVIRPDGTDFRKIASREGWSLGS 248
Query: 196 PTWSGD-STIYFHRQADDGWW-------------SIFRVSFPENLEFL------GFPIAP 235
P WS D S I F+ + W I V F L+ + G ++P
Sbjct: 249 PRWSPDGSRIIFYEITTENTWDAHRPESVASATSQIVSVDFATGLDRIQHTNGTGVKVSP 308
Query: 236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEF 295
VT + +G HY S +
Sbjct: 309 QYVTADNIGYLIKGGSSEGI----------------------------HYTAESSTGTVI 340
Query: 296 IGYHRFRGESTEGQSTIPHLEPVASPVKELRML--------RLNGSFPSFSPDGGLIVFN 347
G R S +G+S + + E ++ R FP S G L +
Sbjct: 341 NGTMRSPSWSPDGKSVVYEKSEFEARPMEKKLYSWDPEWEYRFTDVFPDLSQQGRLAITQ 400
Query: 348 HDFELNAGIKIAKSDGSKRWTLIKDRT---------------AFYNSWSPTEKHVIYTST 392
N+ I + DG + + T AF SWSP + + +
Sbjct: 401 KQLG-NSSIVTMRPDGLDQKLVFDPLTQSNISSSEVGQGLAGAFQPSWSPDGEWIAF-GI 458
Query: 393 GPIFQSERATVQ--IARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFL 450
G FQS RAT + IAR D + EI + I N FPS S DG++L
Sbjct: 459 GAWFQS-RATGKGYIARAKA------DGSYHEILTNGTI-------NAGFPSYSLDGRYL 504
Query: 451 VFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV 510
V+R + L ++D + +R LT D +P +SP G I F+ R + N
Sbjct: 505 VYRVWGT-EFGLRIMDLTDKS----VRVLTTTR--DNLPFYSPDGQRIVFT-RRTSYTN- 555
Query: 511 EAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV 570
F + I+PDGS L+ + +G + H ++ADG +L+ + + E
Sbjct: 556 --FDVCTIRPDGSDLKVLTSSGANDA---------HATWTADGR-ILYASGMYGFRDEAA 603
Query: 571 SWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLD 614
+ N FQPYG ++V+ DGS LT + +E+ + P L+
Sbjct: 604 IYDNTFQPYGQIFVMNADGSNKTILTDSIWEDSMALYLPNEVLE 647
>gi|442317383|ref|YP_007357404.1| beta-propeller repeat-containing to-pal system protein TolB
[Myxococcus stipitatus DSM 14675]
gi|441485025|gb|AGC41720.1| beta-propeller repeat-containing to-pal system protein TolB
[Myxococcus stipitatus DSM 14675]
Length = 343
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 124/298 (41%), Gaps = 56/298 (18%)
Query: 253 DGKRLAVATRRK--NRNFRHIEIYDLTLNPNFHHYNPFVSANSEFI---GYHRFRGESTE 307
DGK L V R+ F+ + + L + P A + G +
Sbjct: 70 DGKSLLVVAVREVDGLQFQQLRVQPLAGGDAVPLHAPRARARNAVWAPDGSWLSAESDAQ 129
Query: 308 GQSTIPHLEPVASPVKELRMLRLN-GSF-PSFSPDGGLIVFNHDFELNAGIKIAKSDGSK 365
G S + LEP A V E+R+ ++ G F P+ SPDG + F E + I +AK+DG+
Sbjct: 130 GFSDVVRLEPRAD-VPEVRLTQVKEGCFEPAISPDGQEVAFVCSREGDPEIYVAKADGTN 188
Query: 366 RWTLIKDRTAFYNS-----WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR 420
L TAF+ WSP K +++ S D NR
Sbjct: 189 ERRL----TAFHREDRAPVWSPDGKWIVFVS------------------------DRENR 220
Query: 421 EEI------PCDVKILTKEE-TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
E + D++ ++ E +G+ P+ SPDGK LV+ S + V G
Sbjct: 221 ERLYLIRPDGSDLRAVSGESFSGDEREPAFSPDGKHLVYVSREPEARARLWRVPVEG--- 277
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA 531
G LT+G D MP+WSP G +AF S R +V Y+++ DGSG R+ A
Sbjct: 278 GVPVALTEGQRRDDMPAWSPDGKYLAFVSEREGNTDV-----YLMRADGSGQTRLTTA 330
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 95/223 (42%), Gaps = 48/223 (21%)
Query: 417 DNNREEIPCDVKILTKEETGNNAF-PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGD 475
D R E DV + + F P+ SPDG+ + F R G ++V A +
Sbjct: 133 DVVRLEPRADVPEVRLTQVKEGCFEPAISPDGQEVAFVCSREGDPEIYVAKA----DGTN 188
Query: 476 IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEG 535
R+LT D P WSP G I F S+R N + LY+I+PDGS LR V+G
Sbjct: 189 ERRLTAFHREDRAPVWSPDGKWIVFVSDRENRER-----LYLIRPDGSDLR--AVSGESF 241
Query: 536 SGDVDRERINHVCFSADGEWLLFT-------ANLGAVMAE---PVSWPN--------QFQ 577
SGD +RE FS DG+ L++ A L V E PV+ +
Sbjct: 242 SGD-ERE----PAFSPDGKHLVYVSREPEARARLWRVPVEGGVPVALTEGQRRDDMPAWS 296
Query: 578 PYG-------------DLYVVKLDGSGLRRLTWNGYENGTPAW 607
P G D+Y+++ DGSG RLT + P W
Sbjct: 297 PDGKYLAFVSEREGNTDVYLMRADGSGQTRLTTAKEPDWLPRW 339
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 87/210 (41%), Gaps = 29/210 (13%)
Query: 285 YNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLI 344
+ P +S + + + + R EG I + + + L P +SPDG I
Sbjct: 156 FEPAISPDGQEVAFVCSR----EGDPEIYVAKADGTNERRLTAFHREDRAPVWSPDGKWI 211
Query: 345 VFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN---SWSPTEKHVIYTSTGPIFQSERA 401
VF D E + + + DGS + + + ++SP KH++Y S P A
Sbjct: 212 VFVSDRENRERLYLIRPDGSDLRAVSGESFSGDEREPAFSPDGKHLVYVSREP-----EA 266
Query: 402 TVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKN 461
++ RV + V + E + P+ SPDGK+L F S R G+ +
Sbjct: 267 RARLWRVPVE-------------GGVPVALTEGQRRDDMPAWSPDGKYLAFVSEREGNTD 313
Query: 462 LFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491
++++ A + +G R LT D +P W
Sbjct: 314 VYLMRA---DGSGQTR-LTTAKEPDWLPRW 339
>gi|344340294|ref|ZP_08771220.1| Protein tolB [Thiocapsa marina 5811]
gi|343799952|gb|EGV17900.1| Protein tolB [Thiocapsa marina 5811]
Length = 440
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 138/341 (40%), Gaps = 55/341 (16%)
Query: 295 FIGYHRFRGE---STEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFE 351
FI Y FRG+ S+ ST + A + ++ +L G + + E
Sbjct: 126 FILYDVFRGDQLASSTIVSTKAGMRNTAHRISDIIYQKLTGQRGVAATRIAYVTATGQGE 185
Query: 352 -LNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVS 409
+++A +DG T++ + +WSP + + Y S F+++RA + +
Sbjct: 186 GQTVTLRVADADGYNPQTIVSSGEPIMSPAWSPDGRRIAYVS----FENKRAAIYV---- 237
Query: 410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN 469
+E+ + L G N P+ SPDG+ L + G+ +++VLD +
Sbjct: 238 -----------QELASGRRELVASHPGINGSPAFSPDGRKLAMTLSKDGNPDIYVLDLTS 286
Query: 470 GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH 529
E + +LTD IDT PSWSP G I F+S+R + Y + G +RI
Sbjct: 287 RE----LVRLTDHFAIDTEPSWSPDGQQIIFTSDRGGSPQI-----YRMGSGGGPAQRIS 337
Query: 530 VAG---------PEGSGDVDRERINHV----CFSADGEWLLFTANLGAVMAEPVSWPNQF 576
G P+G V R+N + D ++ +N G++ P PN
Sbjct: 338 SEGDYNARASYAPDGRSIVLVTRVNGMFRIGVIDLDRGFMRLLSN-GSLDESPSFAPNAS 396
Query: 577 QPY--------GDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G L +DG G +RL+ + E PAW P
Sbjct: 397 MVIYATIHGGRGVLAAASIDGGGNQRLSQDSGEVREPAWSP 437
>gi|391874363|gb|EIT83259.1| hypothetical protein Ao3042_11485 [Aspergillus oryzae 3.042]
Length = 647
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 154/640 (24%), Positives = 241/640 (37%), Gaps = 135/640 (21%)
Query: 39 LTDGTSINFNAQFV-DGQDQTIAFISERSG--SPRIYQTRPGSSKTELLPSIPCSLFHDR 95
L + + +++A F DGQ I F SER+G + +Y+ R S E L + S D
Sbjct: 79 LGNNSRFDYHASFSPDGQ--WITFTSERNGDGNSDLYRCRADGSGLEKL--VATSSVEDA 134
Query: 96 PVAR--NNKLFFIS-AHEQPDQIF----KSWSALYSTDLKASKFTRLTPYGVVDYSPSVS 148
V +K+ ++S A+ ++ K+ T+L+ K P G + PS S
Sbjct: 135 GVLSPDASKVAWVSTANGYTTNVWVMDLKTGEQRNLTNLEGVKGDPTKPNGY--FRPSWS 192
Query: 149 YSGKFIAVASYESRPWPGEF------HELNTDIVVFQESDPNKRVIVCERG---GWPTWS 199
G++IA +S + W G H + V + + R I G G P WS
Sbjct: 193 PDGEWIAFSSDRNTEWRGHGNGTGWEHTQELSVYVIRPDGTDFRKIASREGWSLGSPRWS 252
Query: 200 GD-STIYFHRQADDGWW-------------SIFRVSFPENLEFL------GFPIAPTRVT 239
D S I F+ + W I V F L+ + G ++P VT
Sbjct: 253 PDGSRIIFYEITTENTWDAHRPESVASATSQIVSVDFATGLDRIQHTNGTGVKVSPQYVT 312
Query: 240 PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYH 299
+ +G HY S + G
Sbjct: 313 ADNIGYLIKGGSSEGI----------------------------HYTAESSTGTVINGTM 344
Query: 300 RFRGESTEGQSTIPHLEPVASPVKELRML--------RLNGSFPSFSPDGGLIVFNHDFE 351
R S +G+S + + E ++ R FP S G L +
Sbjct: 345 RSPSWSPDGKSVVYEKSEFEARPMEKKLYSWDPEWEYRFTDVFPDLSQQGRLAITQKQLG 404
Query: 352 LNAGIKIAKSDGSKRWTLIKDRT---------------AFYNSWSPTEKHVIYTSTGPIF 396
N+ I + DG + + T AF SWSP + + + G F
Sbjct: 405 -NSSIVTMRPDGLDQKLVFDPLTQSNISSSEVGQGLAGAFQPSWSPDGEWIAF-GIGAWF 462
Query: 397 QSERATVQ--IARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRS 454
QS RAT + IAR D + EI + I N FPS S DG++LV+R
Sbjct: 463 QS-RATGKGYIARAKA------DGSYHEILTNGTI-------NAGFPSYSLDGRYLVYRV 508
Query: 455 GRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFS 514
+ L ++D + +R LT D +P +SP G I F+ R + N F
Sbjct: 509 WGT-EFGLRIMDLTDKS----VRVLTTTR--DNLPFYSPDGQRIVFT-RRTSYTN---FD 557
Query: 515 LYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPN 574
+ I+PDGS L+ + +G + H ++ADG +L+ + + E + N
Sbjct: 558 VCTIRPDGSDLKVLTSSGANDA---------HATWTADGR-ILYASGMYGFRDEAAIYDN 607
Query: 575 QFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLD 614
FQPYG ++V+ DGS LT + +E+ + P L+
Sbjct: 608 TFQPYGQIFVMNADGSNKTILTDSIWEDSMALYLPNEVLE 647
>gi|407916847|gb|EKG10177.1| Six-bladed beta-propeller TolB-like protein [Macrophomina
phaseolina MS6]
Length = 642
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 127/303 (41%), Gaps = 54/303 (17%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRT-------------- 374
R FP S G L + N+ I DG+ +T+ +
Sbjct: 377 RFTDVFPMLSLQGKLAITQKQLG-NSSIVTMNPDGTNEFTVFDTYSTGEVDSSLVSQGLA 435
Query: 375 -AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE 433
AF +WSP K + + G FQS RAT + S+ + E + +
Sbjct: 436 GAFQPTWSPDGKWIAF-GLGQWFQS-RAT---GKAKVYRATSNGSYYEAL--------TD 482
Query: 434 ETGNNAFPSCSPDGKFLVFRSG--RSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491
T ++ FPS S DG++LVFR R G + + + D +R LT+ D +P W
Sbjct: 483 GTVHSGFPSYSADGRYLVFREWGVRYGLRIIDLQDK-------SMRFLTNA--TDNLPGW 533
Query: 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSA 551
SP G+ I F+ N F + I+PDG+ L+ + +G + H ++A
Sbjct: 534 SPDGERIVFTRKM----NATNFDVCTIRPDGTDLQVLTSSGANDA---------HAVWTA 580
Query: 552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGN 611
DG + F+ + E + FQPYG + ++ DGS R +T + +E+ P + P
Sbjct: 581 DGR-IAFSTGMYGFRDEAAIYDQTFQPYGQIMIMDADGSSKRLITDSIWEDSMPLYVPNE 639
Query: 612 QLD 614
L+
Sbjct: 640 FLE 642
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 35/205 (17%)
Query: 342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAF--YNSWSPTEKHVIYTSTGPIFQSE 399
G++ N + + IA SDGS L+ + + F + S+SP + +I+T+ ++
Sbjct: 46 GVLFMNRIGPSTSELYIADSDGSNERKLLGNSSVFEYHASFSPDGQWIIFTTE----RNG 101
Query: 400 RATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGH 459
I RV ++ E++ + E+ G + SPDG L + S +G+
Sbjct: 102 DGNSDIYRVH-----TNGTGLEKLVASSSV---EDAG-----ALSPDGTKLAYVSTANGY 148
Query: 460 K-NLFVLDAVNG-EFN----GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP------ 507
K N++V D G E N + + P P+WSP G+ +AFSS+R+
Sbjct: 149 KANIWVKDLTTGTETNLTNTESVTGVATSPDGYFRPAWSPDGEWLAFSSDRNTAWTGHGN 208
Query: 508 ----DNVEAFSLYVIKPDGSGLRRI 528
++ + S+YVIKPDG+G R++
Sbjct: 209 GTGWEHTQELSVYVIKPDGTGFRKL 233
>gi|82523888|emb|CAI78611.1| tolB protein [uncultured delta proteobacterium]
Length = 437
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 89/175 (50%), Gaps = 33/175 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDGK + F S R G+ N++ +++ NG+ ++R+LT +T P WSPKGD I F
Sbjct: 296 PTWSPDGKKIAFVSDRGGNPNIYTMNS-NGQ---NVRRLTFEGTYNTSPDWSPKGDNIVF 351
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ DN+ F +Y I+PDGSGL +I D E +S DG ++++++
Sbjct: 352 TGR----DNLGYFQIYTIRPDGSGLCQITF------NSADNE---EPSWSPDGRFIVYSS 398
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDL 615
+ + +Y++ +G+G R+L E P W P +LD+
Sbjct: 399 TI--------------EGKSGIYIMLFNGTGRRKLINLNGEQTYPVWSP--RLDM 437
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 35/176 (19%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G N S S + + + G+ ++++++ NG I +LT ID P+WSP G
Sbjct: 247 GINLSASWSDKHQMIATSLSKDGYPDIYLMNT-NGNI---ISRLTRSNSIDISPTWSPDG 302
Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW 555
IAF S+R N+ Y + +G +RR+ G + +S G+
Sbjct: 303 KKIAFVSDRGGNPNI-----YTMNSNGQNVRRLTFEGTYNTSP---------DWSPKGDN 348
Query: 556 LLFTA--NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
++FT NLG Y +Y ++ DGSGL ++T+N +N P+W P
Sbjct: 349 IVFTGRDNLG---------------YFQIYTIRPDGSGLCQITFNSADNEEPSWSP 389
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 29/167 (17%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNS---WSPTEKHVIYTS 391
P++SPDG I F D N I S+G L + T YN+ WSP ++++T
Sbjct: 296 PTWSPDGKKIAFVSDRGGNPNIYTMNSNGQNVRRLTFEGT--YNTSPDWSPKGDNIVFTG 353
Query: 392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451
+ QI + + P C + + +N PS SPDG+F+V
Sbjct: 354 -----RDNLGYFQI----YTIRPDGSG-----LCQITF----NSADNEEPSWSPDGRFIV 395
Query: 452 FRSGRSGHKNLFVLDAVNGEFNGD-IRQLTDGPWIDTMPSWSPKGDL 497
+ S G ++++ FNG R+L + T P WSP+ D+
Sbjct: 396 YSSTIEGKSGIYIM-----LFNGTGRRKLINLNGEQTYPVWSPRLDM 437
>gi|350554020|ref|ZP_08923165.1| Protein tolB [Thiorhodospira sibirica ATCC 700588]
gi|349789120|gb|EGZ43095.1| Protein tolB [Thiorhodospira sibirica ATCC 700588]
Length = 432
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 124/323 (38%), Gaps = 52/323 (16%)
Query: 310 STIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDF-ELNAGIKIAKSDGSKRWT 368
ST L A + +L R+ G +F + + ++IA +DG T
Sbjct: 136 STRAELRRTAHKISDLIFERITGKRGAFDTQIAYVSATRSTTQRQFTLQIADADGHNPRT 195
Query: 369 LIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDV 427
+ + + +WSP + + Y S F++ R+ V I + I
Sbjct: 196 IFRSTEPLMSPAWSPDGQRLAYVS----FENRRSEVYI---------------QTISSGT 236
Query: 428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT 487
+ L G N P+ SPDG+ L + G N++VLD + + +RQLT IDT
Sbjct: 237 RTLVASHPGINGAPAWSPDGRRLALALSKDGEPNIYVLDLASRQ----LRQLTQTRSIDT 292
Query: 488 MPSWSPKGDLIAFSSNRH-NPDNVEAFSLYVIKPDGSGLRRIHVAG---------PEGS- 536
P W+P G I F+S+R NP LY + DG RR+ G P+G
Sbjct: 293 EPVWAPDGRSIIFTSDRAGNPQ------LYEVGIDGGQPRRLTFEGRYSGAADIAPDGRT 346
Query: 537 -----GDVDRERINHVCFSADGEWLLFTANLG-----AVMAEPVSWPNQFQPYGDLYVVK 586
GD R RI + + +L + A + + Q G L V
Sbjct: 347 LAFVYGDDGRFRIAALNRATQAARMLTQGRMDESPSFAPNGSMIIYATSEQGRGVLAAVS 406
Query: 587 LDGSGLRRLTWNGYENGTPAWHP 609
DG +RL E PAW P
Sbjct: 407 EDGRVHQRLLSQEGEVREPAWSP 429
>gi|358372530|dbj|GAA89133.1| tat pathway signal sequence domain-containing protein [Aspergillus
kawachii IFO 4308]
Length = 687
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 86/184 (46%), Gaps = 19/184 (10%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
N+ FPS SPDG +V+R + L +N G QLTDG D P WSP G+
Sbjct: 517 NSGFPSWSPDGTAIVYRKWSLATEAPLGLHILNFT-TGKTHQLTDG--WDNTPGWSPDGE 573
Query: 497 LIAFSSNRHNPDNVEA------FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS 550
I F+ N + ++ A F +Y I+PDGS L R+ + + H +S
Sbjct: 574 RIVFTRNNNWTESYGARWYADRFDIYTIRPDGSELTRVTDSLSNDA---------HAVWS 624
Query: 551 ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPG 610
DG ++++ + E + + FQPYG + V+ DG+ +T +E+ P + P
Sbjct: 625 QDGR-IMWSTGMYGFKDESALFDDTFQPYGQIMVMNYDGTNKTLVTDTIWEDSMPLYMPN 683
Query: 611 NQLD 614
L+
Sbjct: 684 EYLE 687
Score = 42.7 bits (99), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 93/229 (40%), Gaps = 58/229 (25%)
Query: 447 GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHN 506
G F + R G SG + L++ +A + T+ D P+WSP G+ I F+S R
Sbjct: 67 GIFYMNRIGPSGGQ-LWISNADGTNATQLMGNQTNA--FDYHPTWSPDGEWIVFTSERRG 123
Query: 507 PDNVEAFSLYVIKPDGSGLRR---------IHVAGPEGSG-------------------- 537
P + LY ++ DGSGL I V P+G+
Sbjct: 124 PGQSD---LYRVRVDGSGLETLAATDSVEDIGVLSPDGNKLAYVSTQGNYTTNIWVKDLT 180
Query: 538 --------DVDRERINHV--------CFSADGEWLLFTANLGAVM---AEPVSWPNQFQP 578
D + R ++ +S DGEW++F+++ ++ W + Q
Sbjct: 181 SGQAQNLTDTEANRADNTWPTGHFRPSWSPDGEWIVFSSDRNTDWTGHSDGTGWEHT-QT 239
Query: 579 YGDLYVVKLDGSGLRRLT-WNGYENGTPAWHP-GNQLDLGKLRLEDDIG 625
G +Y V+ DGS R + +GY GTP + P G ++ + E+ G
Sbjct: 240 LG-VYAVRPDGSDFRTVIRQDGYSLGTPQFSPDGKRIIYNNMTTENTYG 287
>gi|94970959|ref|YP_593007.1| Xaa-Pro aminopeptidase-like protein [Candidatus Koribacter
versatilis Ellin345]
gi|94553009|gb|ABF42933.1| WD40-like beta Propeller [Candidatus Koribacter versatilis
Ellin345]
Length = 298
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 98/231 (42%), Gaps = 42/231 (18%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI-KDRTAFYNSWSPTEKHVIYTSTG 393
P++SPDG + F E I + DG L K+ + SWSP + VI+ +
Sbjct: 84 PAWSPDGKHVAFVLIHEKVEQIHLMDPDGGNVTPLTPKESKTIHPSWSPDSRRVIFCTDD 143
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEET-----GNNAFPSCSPDGK 448
L P N+ + + D I T E T G N FP SPDG
Sbjct: 144 -----------------DLAPPKKNDSDILAMD--IATHETTKLISGGVNTFPVWSPDGT 184
Query: 449 FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD 508
L FR G +N V A E D + LT+ P D P+WSP G IAF+SNR
Sbjct: 185 KLAFRR-MLGERNSEVFLA--NENGSDPKNLTNDPAFDGWPAWSPDGKQIAFASNRRG-- 239
Query: 509 NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559
++V+ DGSG+R+ A EG R +S DG+ L FT
Sbjct: 240 ---NHEIFVMNADGSGVRK--AANSEG-------RATSPKWSKDGKKLYFT 278
>gi|256393088|ref|YP_003114652.1| WD40 domain-containing protein beta Propeller [Catenulispora
acidiphila DSM 44928]
gi|256359314|gb|ACU72811.1| WD40 domain protein beta Propeller [Catenulispora acidiphila DSM
44928]
Length = 647
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 142/624 (22%), Positives = 231/624 (37%), Gaps = 109/624 (17%)
Query: 35 HEHRLTDGTSINFNAQFVDGQDQTIAFISERSG---SPRIYQTRPGSSK-TELLPSIPCS 90
+E RL ++ + +A + +TI F +ER+G S + + GS + + PSI S
Sbjct: 70 NERRLLQNSAFDRHAS-ITADGKTIYFTTERAGDGNSSIYWASLNGSGQGVGVQPSITGS 128
Query: 91 LFHDR--PVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVD------ 142
D P KL F+S D + + W +LK+ T LT +
Sbjct: 129 AVDDTGVPSPDGTKLAFMSTRSA-DHLAQIWVK----NLKSEALTNLTGTAALKGGSNSP 183
Query: 143 ---YSPSVSYSGKFIAVASYESRPWPGEF------HELNTDIVVFQESDPNKRVIVCERG 193
+ P+ S ++IA +S + W G H I + + R + + G
Sbjct: 184 DGHFRPAWSPDSQWIAFSSDRNTAWTGHGNGTGWEHTQELSIYIIKADGTGFRQVATKPG 243
Query: 194 ---GWPTWSGDST--IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTP 248
G P+WS D T +Y+ +D W PE++ I V T
Sbjct: 244 YCLGSPSWSPDGTRIVYYQLTREDTW----AAHRPEDIGQCESQICSVNVATGATTQLTS 299
Query: 249 AAFHDGKRLAVATRRKNRNFRHIEI-YDLTLNPNFHHYNPFVSANSEFIGYHRFRGE--S 305
A L V+ R N + E+ Y + PN +V+ + R +
Sbjct: 300 TA----NVLKVSPRYVN----NTEVGYLIKGGPN--EGIAYVNGTLPTVLRAGMRSPIWT 349
Query: 306 TEGQSTIPHLEPVASPVKELRML----------RLNGSFPSFSPDGGL-IVFNHDFELNA 354
+G+S I + P A PV+ + R FP S G L I +
Sbjct: 350 PDGKSIIYDV-PDADPVRTIDQTLYSWDSDWDYRFMDVFPVLSKQGRLAITQKQTGAAIS 408
Query: 355 GIKIAKSDGSKRWTLIKDRT-------------AFYNSWSPTEKHVIYTSTGPIFQSERA 401
I K DG+ + T+ + AF SWSP + + + G
Sbjct: 409 SIVTMKPDGTDQVTVYNAASDGDPILEAEGLVGAFRPSWSPDGQWLAFGMGGWFQMRATM 468
Query: 402 TVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKN 461
T + RV SD E + + + N FP SPDG L++R
Sbjct: 469 TAVVYRVK-----SDGTGLEAL--------TDGSTNAGFPCFSPDGTKLLYRV-WGAEDG 514
Query: 462 LFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD 521
L +LD W D +P WS ++I F+ + +F + I PD
Sbjct: 515 LRILDLAT------RTTTALTDWPDNVPDWSDD-NVILFTRKT----SATSFDICTINPD 563
Query: 522 GSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGD 581
G+GL+++ V+G + H ++ G +L+ + E + + FQPYG
Sbjct: 564 GTGLKQLTVSGANHA---------HAVWNGTGR-ILYNSGDAGFREEAALYDDTFQPYGQ 613
Query: 582 LYVVKLDGSGLRRLTWNGYENGTP 605
++ + DGS LT + +E+ P
Sbjct: 614 IFSMNADGSDNTMLTDSQWEDSMP 637
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 23/200 (11%)
Query: 437 NNAF---PSCSPDGKFLVFRSGRSGHKNLFVLDA-VNGEFNG-DIRQLTDGPWIDTMPSW 491
N+AF S + DGK + F + R+G N + A +NG G ++ G +D
Sbjct: 77 NSAFDRHASITADGKTIYFTTERAGDGNSSIYWASLNGSGQGVGVQPSITGSAVDDTGVP 136
Query: 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSA 551
SP G +AF S R + D++ + +K + L + G + +S
Sbjct: 137 SPDGTKLAFMSTR-SADHLAQIWVKNLKSEA--LTNLTGTAALKGGSNSPDGHFRPAWSP 193
Query: 552 DGEWLLFTANLGAVMAEPVSWPNQFQPYG-------DLYVVKLDGSGLRRL-TWNGYENG 603
D +W+ F+++ +W G +Y++K DG+G R++ T GY G
Sbjct: 194 DSQWIAFSSD------RNTAWTGHGNGTGWEHTQELSIYIIKADGTGFRQVATKPGYCLG 247
Query: 604 TPAWHP-GNQLDLGKLRLED 622
+P+W P G ++ +L ED
Sbjct: 248 SPSWSPDGTRIVYYQLTRED 267
>gi|254294964|ref|YP_003060987.1| hypothetical protein Hbal_2615 [Hirschia baltica ATCC 49814]
gi|254043495|gb|ACT60290.1| WD40 domain protein beta Propeller [Hirschia baltica ATCC 49814]
Length = 648
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 93/199 (46%), Gaps = 28/199 (14%)
Query: 420 REEIPCDVKILTKEETG---------NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG 470
R + P V ++ ++ TG N FPS S DGK +V+R + L + +
Sbjct: 463 RYDAPARVMMVRRDGTGLREVTHGEENAGFPSFSADGKEIVYRVWDKENIGLRIYNIEKD 522
Query: 471 EFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530
E R LT+ D +P++SP G I F+ + D + LY IKPDG+ L R+
Sbjct: 523 EH----RVLTETG--DNLPAYSPDGTRILFTRRHGHAD----YDLYTIKPDGTDLVRL-T 571
Query: 531 AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590
P G G H +S DG ++++ ++ E + + FQ YG ++V+ DGS
Sbjct: 572 THPSGDG--------HAVWSNDGSKIMWSGSVYGFRDEAALYDDTFQQYGQIWVMNADGS 623
Query: 591 GLRRLTWNGYENGTPAWHP 609
+T + +E+ P + P
Sbjct: 624 NKHMVTDSKWEDSMPLYVP 642
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 66/146 (45%), Gaps = 30/146 (20%)
Query: 442 SCSPDGKFLVFRSGRSGH-KNLFVLDAVNGEFNGDIRQLTDGPWI--DTM-------PSW 491
S SPDGK + F S R G+ N+++ D GE LT I D M PSW
Sbjct: 137 SISPDGKKIAFVSTREGYFSNVWIKDLETGELT----NLTGAEHIQGDPMLPNSFLRPSW 192
Query: 492 SPKGDLIAFSSNRHNP----------DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV-- 539
SP G IAFSS+R+ ++ + S+YVI DG RR+ V+ PE S
Sbjct: 193 SPDGKWIAFSSDRNTNWRGHDYPIGWEHTQELSIYVIGADGQNFRRL-VSKPEMSYGSPS 251
Query: 540 ---DRERINHVCFSADGEWLLFTANL 562
D +RI+ + + W NL
Sbjct: 252 WSPDGKRISFYAITTEDTWGARRYNL 277
>gi|350637375|gb|EHA25732.1| hypothetical protein ASPNIDRAFT_50375 [Aspergillus niger ATCC 1015]
Length = 688
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 19/184 (10%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
N+ FPS SPDG +V+R + L +N G QLTDG D P WSP G+
Sbjct: 518 NSGFPSWSPDGSAIVYRKWSLATEAPLGLHILNFT-TGKTHQLTDG--WDNTPGWSPDGE 574
Query: 497 LIAFSSNRHNPDNVEA------FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS 550
I F+ N + ++ A F +Y I+PDGS L R+ S D H +S
Sbjct: 575 RIVFTRNNNWTESYGARWYADRFDIYTIRPDGSELTRVT---DSLSNDA------HAVWS 625
Query: 551 ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPG 610
DG +++++ E + + FQPYG + V+ DG+ +T +E+ P + P
Sbjct: 626 QDGR-IMWSSGQYGFKDESALFDDTFQPYGQIMVMNYDGTNKTLVTDTIWEDSMPLYMPN 684
Query: 611 NQLD 614
L+
Sbjct: 685 EYLE 688
Score = 45.4 bits (106), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 40/208 (19%)
Query: 342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN---SWSPTEKHVIYTST--GPIF 396
G+ N + I+ SDG+ L+ +++ ++ +WS + +++TS GP
Sbjct: 67 GIFYMNRIGPSGGQLWISNSDGTNATQLMGNQSNAFDYHPTWSSDGEWIVFTSERRGP-G 125
Query: 397 QSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR 456
QS+ V++ + + D+ D+ +L SP+GK L + S +
Sbjct: 126 QSDLYRVRVDGSGLETLAATDSVE-----DIGVL-------------SPNGKTLAYVSTQ 167
Query: 457 SGHK-NLFVLDAVNGE---FNGDIRQLTDGPWIDT--MPSWSPKGDLIAFSSNRHNP--- 507
+ N++V D +G+ D W PSWSP G+ I FSS+R+
Sbjct: 168 GNYTTNIWVKDLASGQAQNLTDTASNRADNTWPTGHFRPSWSPDGEWIVFSSDRNTDWTG 227
Query: 508 -------DNVEAFSLYVIKPDGSGLRRI 528
++ + +Y ++PDGS R +
Sbjct: 228 HSDGTGWEHTQTLGVYAVRPDGSDFRTV 255
>gi|317033773|ref|XP_001395414.2| hypothetical protein ANI_1_1672104 [Aspergillus niger CBS 513.88]
Length = 688
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 86/184 (46%), Gaps = 19/184 (10%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
N+ FPS SPDG +V+R + L +N G QLTDG D P WSP G+
Sbjct: 518 NSGFPSWSPDGSAIVYRKWSLATEAPLGLHILNFT-TGKTHQLTDG--WDNTPGWSPDGE 574
Query: 497 LIAFSSNRHNPDNVEA------FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS 550
I F+ N + ++ A F +Y I+PDGS L R+ + + H +S
Sbjct: 575 RIVFTRNNNWTESYGARWYADRFDIYTIRPDGSELTRVTDSLSNDA---------HAVWS 625
Query: 551 ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPG 610
DG +++++ E + + FQPYG + V+ DG+ +T +E+ P + P
Sbjct: 626 QDGR-IMWSSGQYGFKDESALFDDTFQPYGQIMVMNYDGTNKTLVTDTIWEDSMPLYMPN 684
Query: 611 NQLD 614
L+
Sbjct: 685 EYLE 688
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 40/208 (19%)
Query: 342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN---SWSPTEKHVIYTST--GPIF 396
G+ N + I+ SDG+ L+ +++ ++ +WS + +++TS GP
Sbjct: 67 GIFYMNRIGPSGGQLWISNSDGTNATQLLGNQSNAFDYHPTWSSDGEWIVFTSERRGP-G 125
Query: 397 QSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR 456
QS+ V++ + + D+ D+ +L SP+GK L + S +
Sbjct: 126 QSDLYRVRVDGSGLETLAATDSVE-----DIGVL-------------SPNGKTLAYVSTQ 167
Query: 457 SGHK-NLFVLDAVNGE---FNGDIRQLTDGPWIDT--MPSWSPKGDLIAFSSNRHNP--- 507
+ N++V D +G+ D W PSWSP G+ I FSS+R+
Sbjct: 168 GNYTTNIWVKDLASGQAQNLTDTASNRADNTWPTGHFRPSWSPDGEWIVFSSDRNTDWTG 227
Query: 508 -------DNVEAFSLYVIKPDGSGLRRI 528
++ + +Y ++PDGS R +
Sbjct: 228 HSDGTGWEHTQTLGVYAVRPDGSDFRTV 255
>gi|302882872|ref|XP_003040341.1| hypothetical protein NECHADRAFT_34811 [Nectria haematococca mpVI
77-13-4]
gi|256721219|gb|EEU34628.1| hypothetical protein NECHADRAFT_34811 [Nectria haematococca mpVI
77-13-4]
Length = 629
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 137/323 (42%), Gaps = 55/323 (17%)
Query: 318 VASPVKEL------RMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK 371
V SP K+L R FP ++ +VF N+ + + ++ +T +K
Sbjct: 329 VRSPAKKLFSWDEEWEYRFMDVFPQYNKATERLVFTQKQLGNSSVVTSTTE----YTDLK 384
Query: 372 DRTAFYNSWSP---TEKHVIYTSTGPIFQSERA--TVQIARVSFQLDPSDDNNREEIPCD 426
+ Y+ WS TE ++ + G FQ + QIA V F + NR P
Sbjct: 385 EVFDVYDVWSTDNETEVGIVKSGLGGAFQPTWSPDGSQIA-VGFGVWFF---NRNSNPAS 440
Query: 427 VKI----------LTKEETGNNA-FPSCSPDGKFLVFRSGRSGHK---NLFVLDAVNGEF 472
+ + +T ET NA FPS SPDG LV+R S K L +LD G+
Sbjct: 441 IYLANATGDGFYNMTDIETDLNAGFPSFSPDGTKLVYRLWNSKDKIPLGLRILDLTTGK- 499
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV------EAFSLYVIKPDGSGLR 526
LT G W D P WSP G+ I F+ + + F + I+PDGS L
Sbjct: 500 ---TTNLTSG-W-DNTPGWSPDGERIVFTRQVNWTSEYGSRWYEDRFDIMTIRPDGSDLT 554
Query: 527 RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVK 586
++ + + H +S DG +L++ + E + N FQPYG + V+
Sbjct: 555 QVTDSPANDA---------HAVWSYDGR-ILWSTGMYGFRDESSQYENTFQPYGQIMVMD 604
Query: 587 LDGSGLRRLTWNGYENGTPAWHP 609
DGS R LT + +E+ P + P
Sbjct: 605 ADGSNKRMLTDSMWEDSMPLYVP 627
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 92/206 (44%), Gaps = 36/206 (17%)
Query: 342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTA---FYNSWSPTEKHVIYTSTGPIFQS 398
G+ N + + +A +DGS L+ + +A F+ SWSP K ++ F S
Sbjct: 11 GIFYLNRIAPSGSLLYVANADGSDAKPLMNNGSAAFDFHASWSPGGKWIV-------FSS 63
Query: 399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG 458
ER + + +++ P N E+ V+ + E+ G SPDG L + S +
Sbjct: 64 ERRADGQSDI-YRVKP----NGSELETLVQTDSFEDAG-----VLSPDGTTLAYVSTQGN 113
Query: 459 H-KNLFVLD-----AVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP----- 507
+ N++V D A N R P P+WSP G+ IAFSS+R+
Sbjct: 114 YTANIWVKDLRTGIAKNLTNTASTRGDRSSPQGHFRPAWSPDGEWIAFSSDRNTEWTGHS 173
Query: 508 -----DNVEAFSLYVIKPDGSGLRRI 528
++ + S+Y+I+P+GS R +
Sbjct: 174 DGTGWEHTQTLSIYIIRPNGSDFRAV 199
Score = 38.9 bits (89), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 75/190 (39%), Gaps = 47/190 (24%)
Query: 330 LNGSFPSFSPDGGLIVF---NHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTE 384
LN FPSFSPDG +V+ N ++ G++I K L D T WSP
Sbjct: 461 LNAGFPSFSPDGTKLVYRLWNSKDKIPLGLRILDLTTGKTTNLTSGWDNTP---GWSPDG 517
Query: 385 KHVIYTST-------GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGN 437
+ +++T G + +R + R D SD + P N
Sbjct: 518 ERIVFTRQVNWTSEYGSRWYEDRFDIMTIRP----DGSDLTQVTDSPA-----------N 562
Query: 438 NAFPSCSPDGKFLV------FRSGRSGHKNLF-------VLDAVNGEFNGDIRQLTDGPW 484
+A S DG+ L FR S ++N F V+DA + R LTD W
Sbjct: 563 DAHAVWSYDGRILWSTGMYGFRDESSQYENTFQPYGQIMVMDADGS----NKRMLTDSMW 618
Query: 485 IDTMPSWSPK 494
D+MP + P+
Sbjct: 619 EDSMPLYVPR 628
>gi|452752921|ref|ZP_21952660.1| TolB protein precursor [alpha proteobacterium JLT2015]
gi|451959743|gb|EMD82160.1| TolB protein precursor [alpha proteobacterium JLT2015]
Length = 446
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 88/173 (50%), Gaps = 32/173 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG LVF R+G+ +++ ++ VNG G++ +LT GP IDT PS+SP G I F
Sbjct: 263 PRFSPDGSTLVFSQARAGNTDIYKMN-VNG---GNVVRLTSGPGIDTAPSYSPDGRRIVF 318
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LYV+ DGSG +RI EG+ R +S G+ + FT
Sbjct: 319 ESDRGGTQQ-----LYVMNADGSGQQRISFG--EGA------RYGTPVWSPRGDLIAFTK 365
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G +F+ + V++ DGSG R LT + +++ P W P ++
Sbjct: 366 IGGG----------KFR----IGVMRPDGSGERLLT-DAWQDEGPTWSPNGRV 403
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 102/238 (42%), Gaps = 24/238 (10%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA 354
Y R GE+ S + ++ P S +K L ++ +G+ F +G +V F N
Sbjct: 166 YSRLTGETGYFDSRVVYVSETGPATSRIKRLAIMDQDGANHRFLTNGQNLVLTPRFAPNQ 225
Query: 355 GIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHV---IYTSTGPIFQSERATVQIARVSFQ 411
S R R Y+ S +++ + S P F + +T+ ++
Sbjct: 226 QTVAYLSYAQNR-----PRIYIYDIASGSQRLIGDFPNMSFAPRFSPDGSTLVFSQARAG 280
Query: 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471
+ D + + + G + PS SPDG+ +VF S R G + L+V+ N +
Sbjct: 281 ---NTDIYKMNVNGGNVVRLTSGPGIDTAPSYSPDGRRIVFESDRGGTQQLYVM---NAD 334
Query: 472 FNGDIR-QLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
+G R +G T P WSP+GDLIAF+ F + V++PDGSG R +
Sbjct: 335 GSGQQRISFGEGARYGT-PVWSPRGDLIAFTKIGGG-----KFRIGVMRPDGSGERLL 386
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 65/166 (39%), Gaps = 19/166 (11%)
Query: 37 HR-LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDR 95
HR LT+G ++ +F Q QT+A++S PRIY S L+ P F R
Sbjct: 206 HRFLTNGQNLVLTPRFAPNQ-QTVAYLSYAQNRPRIYIYDIASGSQRLIGDFPNMSFAPR 264
Query: 96 PVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIA 155
+ L F A I+K ++ RLT +D +PS S G+ I
Sbjct: 265 FSPDGSTLVFSQARAGNTDIYK-------MNVNGGNVVRLTSGPGIDTAPSYSPDGRRIV 317
Query: 156 VASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCE--RGGWPTWS 199
S R + + +N D +R+ E R G P WS
Sbjct: 318 FES--DRGGTQQLYVMNAD------GSGQQRISFGEGARYGTPVWS 355
>gi|320160892|ref|YP_004174116.1| hypothetical protein ANT_14880 [Anaerolinea thermophila UNI-1]
gi|319994745|dbj|BAJ63516.1| hypothetical protein ANT_14880 [Anaerolinea thermophila UNI-1]
Length = 287
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 122/280 (43%), Gaps = 57/280 (20%)
Query: 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD-RTAFYNSWSPTEKHVIYTST 392
+ +++PDG + F D N I I + + + + +WSP K++ Y S
Sbjct: 61 WQTWAPDGRYLAFTSDRSGNLDIWILDTQKEVVFNYTNNPEDEGWPAWSPDGKYLAYAS- 119
Query: 393 GPIFQSERATVQIARVSFQLDPSDDNNREEI-PCDVKILTKEETGNNAFPSCSPDGKFLV 451
+ T I R++ SD +NR + P D G++ P+ SPD + +V
Sbjct: 120 -----NREGTYDIWRMN-----SDGSNRVNLTPGD---------GDDGLPAWSPDSQRIV 160
Query: 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVE 511
F S R+G+ +L++ +VNG G++ Q+T D MP+WSP G IAF S R
Sbjct: 161 FSSNRNGNYDLYIA-SVNG---GELEQITSDEADDIMPAWSPDGKKIAFVSKR------- 209
Query: 512 AFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV--CFSADGEWLLFTANLGAVMAEP 569
DG+ ++ +G ++ + N + DG +LF +
Sbjct: 210 ---------DGNSEIYLYDIASKGVTNLTKNPYNDETPAWYPDGSRILFVS--------- 251
Query: 570 VSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+F D+Y +K DGS +RRLT + + P W P
Sbjct: 252 ----ERFDNQWDVYSMKPDGSEVRRLTHDELQEFHPMWRP 287
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 85/176 (48%), Gaps = 32/176 (18%)
Query: 434 ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
++ ++ + + +PDG++L F S RSG+ ++++LD + T+ P + P+WSP
Sbjct: 55 KSSDDFWQTWAPDGRYLAFTSDRSGNLDIWILDTQKEV----VFNYTNNPEDEGWPAWSP 110
Query: 494 KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADG 553
G +A++SNR + ++ + DGS R+++ +G + +S D
Sbjct: 111 DGKYLAYASNREG-----TYDIWRMNSDGSN--RVNLTPGDGDDGL-------PAWSPDS 156
Query: 554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ ++F++N DLY+ ++G L ++T + ++ PAW P
Sbjct: 157 QRIVFSSNRNGNY--------------DLYIASVNGGELEQITSDEADDIMPAWSP 198
>gi|440749201|ref|ZP_20928449.1| tolB protein precursor, periplasmic protein [Mariniradius
saccharolyticus AK6]
gi|436482206|gb|ELP38329.1| tolB protein precursor, periplasmic protein [Mariniradius
saccharolyticus AK6]
Length = 331
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 24/163 (14%)
Query: 442 SCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFS 501
S SPDGK+++F S R G+ ++ +DA + L++ P D +P+WSP G IAF+
Sbjct: 95 SWSPDGKYILFYSNRDGNNEIYRMDAD----GSNPTNLSNHPANDYLPAWSPDGKTIAFT 150
Query: 502 SNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN 561
SNR + DN E +Y++ DGS +RR+ D+ E +S +G+ ++FT
Sbjct: 151 SNR-DSDNRE---IYIMAIDGSNVRRLT------HNDLFEEV---PTWSPNGKQIVFTRQ 197
Query: 562 LGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW-NGYENG 603
L M + V N G+L+V+ +DG +RLT+ GY++G
Sbjct: 198 LEE-MVDTVKTTN-----GELFVMDIDGKNEKRLTFREGYDSG 234
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 116/294 (39%), Gaps = 48/294 (16%)
Query: 342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTA-FYNSWSPTEKHVIYTSTGPIFQSER 400
G++ F + N + +DG + L +++ F++SWSP K++++ + +
Sbjct: 57 GVLAFLTTRDGNFEVYTMNADGREVNNLTQNKALDFWSSWSPDGKYILF------YSNRD 110
Query: 401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHK 460
+I R+ D S+ N P N+ P+ SPDGK + F S R
Sbjct: 111 GNNEIYRM--DADGSNPTNLSNHPA-----------NDYLPAWSPDGKTIAFTSNRDSDN 157
Query: 461 NLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN-RHNPDNVEAFS--LYV 517
+ A++G ++R+LT + +P+WSP G I F+ D V+ + L+V
Sbjct: 158 REIYIMAIDG---SNVRRLTHNDLFEEVPTWSPNGKQIVFTRQLEEMVDTVKTTNGELFV 214
Query: 518 IKPDGSGLRRIHVA---------GPEGS-----GDVDRERINHVCFSADGEWLLFTANLG 563
+ DG +R+ P G G + +ADG ++ N
Sbjct: 215 MDIDGKNEKRLTFREGYDSGGKFSPNGKKIAFYGQDSSKNFEIFTMNADGTDVVNLTNDI 274
Query: 564 AVMAEP--------VSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
P +++ + D++V+ L RLT N TP W P
Sbjct: 275 LEDYSPDWSPDGKWIAYTSGTSKQYDVWVIHLKSLKKFRLTTEPKRNETPVWRP 328
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 109/251 (43%), Gaps = 23/251 (9%)
Query: 272 EIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLN 331
E+ +LT N ++ + S + ++I ++ R +G + I ++ S L N
Sbjct: 80 EVNNLTQNKALDFWSSW-SPDGKYILFYSNR----DGNNEIYRMDADGSNPTNLSNHPAN 134
Query: 332 GSFPSFSPDGGLIVF--NHDFELNAGIKIAKSDGSKRWTLI-KDRTAFYNSWSPTEKHVI 388
P++SPDG I F N D + N I I DGS L D +WSP K ++
Sbjct: 135 DYLPAWSPDGKTIAFTSNRDSD-NREIYIMAIDGSNVRRLTHNDLFEEVPTWSPNGKQIV 193
Query: 389 YTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGK 448
+T Q E + + +L D + + E K LT E G ++ SP+GK
Sbjct: 194 FTR-----QLEEMVDTVKTTNGELFVMDIDGKNE-----KRLTFRE-GYDSGGKFSPNGK 242
Query: 449 FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD 508
+ F G+ KN F + +N + D+ LT+ D P WSP G IA++S
Sbjct: 243 KIAFY-GQDSSKN-FEIFTMNAD-GTDVVNLTNDILEDYSPDWSPDGKWIAYTSGTSKQY 299
Query: 509 NVEAFSLYVIK 519
+V L +K
Sbjct: 300 DVWVIHLKSLK 310
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 72/179 (40%), Gaps = 43/179 (24%)
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDN 509
L F + R G+ ++ ++A E N LT +D SWSP G I F SNR +
Sbjct: 59 LAFLTTRDGNFEVYTMNADGREVN----NLTQNKALDFWSSWSPDGKYILFYSNRDGNNE 114
Query: 510 VEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVC------FSADGEWLLFTANLG 563
+ Y + DGS + NH +S DG+ + FT+N
Sbjct: 115 I-----YRMDADGSNPTNLS---------------NHPANDYLPAWSPDGKTIAFTSNRD 154
Query: 564 AVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLED 622
+ E +Y++ +DGS +RRLT N P W P + + +LE+
Sbjct: 155 SDNRE-------------IYIMAIDGSNVRRLTHNDLFEEVPTWSPNGKQIVFTRQLEE 200
>gi|429861172|gb|ELA35872.1| WD40 domain protein beta propeller [Colletotrichum gloeosporioides
Nara gc5]
Length = 641
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 145/627 (23%), Positives = 243/627 (38%), Gaps = 102/627 (16%)
Query: 28 FVNAPKFHEHRLT-DGTSINFNAQFV-DGQDQTIAFISERSG--SPRIYQTRPGS----- 78
NA +E +L + +S ++A F DGQ + F +ER+G + +Y+ R +
Sbjct: 67 IANADGTNERKLLGNSSSFEYHASFSPDGQ--WVVFTTERNGDGNSDLYRCRVSAAANGT 124
Query: 79 -SKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTP 137
S E L + P +L F+S +K+ ++ DL + LT
Sbjct: 125 CSDLEKLIATPSVEDAGALSPDGTQLAFVSTENG----YKT--NIWVQDLATGERRNLTN 178
Query: 138 YGVVD---------YSPSVSYSGKFIAVASYESRPWPGEF------HELNTDIVVFQESD 182
+ + PS S G++IA AS + W G H + +
Sbjct: 179 TAEIAGDPLLPDGYFRPSWSPDGEWIAFASDRNTAWRGHGNGTGWEHTQELSVYAIRPDG 238
Query: 183 PNKRVIVCERG---GWPTWS--GDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTR 237
R + + G G P WS G +Y+ +D W PE++ + I
Sbjct: 239 TGFREVATKSGYCLGSPKWSTDGKRVVYYEITVEDTW----NAHRPESVAAVTSAIVSVD 294
Query: 238 VTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIG 297
G A+ K + I Y + N N YN A + F+
Sbjct: 295 F-ETGTDRVEHASGSGLKMFPQWLSGETDATDDI-AYLIKGNDN-EGYNYTSGATAAFVV 351
Query: 298 YHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIK 357
Y + G + +P+ S ++ R FP S G L++ N+ I
Sbjct: 352 YEKV------GFTARAQEKPLYSWDEDWEY-RSTDVFPQLSLQGRLVITQKQLG-NSSIV 403
Query: 358 IAKSDGSKRWTLIKDRT---------------AFYNSWSPTEKHVIYTSTGPIFQSERAT 402
DGS + + AF +WS + V++ G FQS RAT
Sbjct: 404 SMNPDGSDLKLVFDSYSTGELDSALVAKGLAGAFQPAWSADGEWVVF-GLGSWFQS-RAT 461
Query: 403 VQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNL 462
+ ARV + + + E D + ++ FPS SPDG+++ FR + +
Sbjct: 462 GK-ARV---YRATSNGSYYEALTDGTV-------HSGFPSYSPDGRYVAFREWGLRY-GI 509
Query: 463 FVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG 522
+LD E +R LT+ D +P WSP G+ + F+ + + F + I+PDG
Sbjct: 510 RILDLETRE----VRSLTNA--TDNLPFWSPDGERLVFTRKVSSTN----FDVATIRPDG 559
Query: 523 SGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDL 582
+ L+ + +G + H ++ADG +L+++ + E + FQPYG +
Sbjct: 560 TDLQILTSSGANDA---------HAVWTADGR-ILYSSGMYGFRDEAAIYDQTFQPYGQI 609
Query: 583 YVVKLDGSGLRRLTWNGYENGTPAWHP 609
V+ DGS R LT + +E+ P + P
Sbjct: 610 IVMDADGSNKRMLTDSLWEDSMPLYVP 636
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 102/217 (47%), Gaps = 37/217 (17%)
Query: 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAF--YNSWSPTEKHVIYTS 391
P+ G+++ N ++ + IA +DG+ L+ + ++F + S+SP + V++T+
Sbjct: 43 LPAADGKKGVLLMNRIGPSSSELYIANADGTNERKLLGNSSSFEYHASFSPDGQWVVFTT 102
Query: 392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451
++ + R ++ + + ++ + + E+ G + SPDG L
Sbjct: 103 E----RNGDGNSDLYRC--RVSAAANGTCSDLEKLIATPSVEDAG-----ALSPDGTQLA 151
Query: 452 FRSGRSGHK-NLFVLDAVNGEFNGDIRQLTDGPWIDT---------MPSWSPKGDLIAFS 501
F S +G+K N++V D GE R LT+ I PSWSP G+ IAF+
Sbjct: 152 FVSTENGYKTNIWVQDLATGER----RNLTNTAEIAGDPLLPDGYFRPSWSPDGEWIAFA 207
Query: 502 SNRHNP----------DNVEAFSLYVIKPDGSGLRRI 528
S+R+ ++ + S+Y I+PDG+G R +
Sbjct: 208 SDRNTAWRGHGNGTGWEHTQELSVYAIRPDGTGFREV 244
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 93/192 (48%), Gaps = 19/192 (9%)
Query: 442 SCSPDGKFLVFRSGRSGHKN--LF---VLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
S SPDG+++VF + R+G N L+ V A NG + D+ +L P ++ + SP G
Sbjct: 90 SFSPDGQWVVFTTERNGDGNSDLYRCRVSAAANGTCS-DLEKLIATPSVEDAGALSPDGT 148
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGD-VDRERINHVCFSADGEW 555
+AF S +N +++V + +G RR E +GD + + +S DGEW
Sbjct: 149 QLAFVST----ENGYKTNIWV-QDLATGERRNLTNTAEIAGDPLLPDGYFRPSWSPDGEW 203
Query: 556 LLFTANLGAVM---AEPVSWPNQFQPYGDLYVVKLDGSGLRRL-TWNGYENGTPAWHP-G 610
+ F ++ W + + +Y ++ DG+G R + T +GY G+P W G
Sbjct: 204 IAFASDRNTAWRGHGNGTGWEHTQEL--SVYAIRPDGTGFREVATKSGYCLGSPKWSTDG 261
Query: 611 NQLDLGKLRLED 622
++ ++ +ED
Sbjct: 262 KRVVYYEITVED 273
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 45/232 (19%)
Query: 285 YNPFVSANSEFI--GYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGG 342
+ P SA+ E++ G + G++ + S + L ++ FPS+SPDG
Sbjct: 437 FQPAWSADGEWVVFGLGSWFQSRATGKARVYRATSNGSYYEALTDGTVHSGFPSYSPDGR 496
Query: 343 LIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSER 400
+ F ++ L GI+I + + +L D F WSP + +++T +
Sbjct: 497 YVAF-REWGLRYGIRILDLETREVRSLTNATDNLPF---WSPDGERLVFTRKVSSTNFDV 552
Query: 401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHK 460
AT++ P D++ILT N+A + DG+ L + SG G +
Sbjct: 553 ATIR---------PDG--------TDLQILTS-SGANDAHAVWTADGRIL-YSSGMYGFR 593
Query: 461 N--------------LFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
+ + V+DA + R LTD W D+MP + P L+
Sbjct: 594 DEAAIYDQTFQPYGQIIVMDAD----GSNKRMLTDSLWEDSMPLYVPNEFLV 641
>gi|334144107|ref|YP_004537263.1| protein tolB [Thioalkalimicrobium cyclicum ALM1]
gi|333965018|gb|AEG31784.1| Protein tolB [Thioalkalimicrobium cyclicum ALM1]
Length = 442
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 118/279 (42%), Gaps = 48/279 (17%)
Query: 351 ELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVS 409
E N + ++ SDG T+++ R + WSP + + Y S F++ R+ + +
Sbjct: 184 ERNYSLDVSDSDGHNPRTILRSRMPIMSPRWSPNGQQIAYVS----FEAGRSIIVLQ--- 236
Query: 410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN 469
S D ++ E+ + + G N+ P SPD + + + G NL++++
Sbjct: 237 -----SLDGSQREVLAEFR-------GINSTPVWSPDSQQMAMTLSKDGSANLYIMNLAT 284
Query: 470 GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY------------- 516
+ +RQ+T+ P IDT PSWSP+GD I F+S+R + L
Sbjct: 285 RQ----LRQVTNHPAIDTEPSWSPEGDAIFFNSDRRGQPQIFKLDLATNVVTRVSFEGRY 340
Query: 517 ----VIKPDGSGLRRIHVAGPEGSG--DVDRERINHVCFSADGEWLLFTANLGAVMAEPV 570
++ P+G L +H G D++ V ++ E F N ++ +
Sbjct: 341 NASPMMSPNGRYLAMVHANNGFNIGIMDMNSGDFRQVTRTSLAESPSFAPN-----SDML 395
Query: 571 SWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ + G+L V+ +DG + L + PAW P
Sbjct: 396 VYATNNRGRGELAVISVDGRAAQVLRVQDGQVREPAWGP 434
>gi|289207751|ref|YP_003459817.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Thioalkalivibrio sp. K90mix]
gi|288943382|gb|ADC71081.1| Tol-Pal system beta propeller repeat protein TolB [Thioalkalivibrio
sp. K90mix]
Length = 428
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 114/279 (40%), Gaps = 53/279 (18%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A SDG+ TL + + WSP + ++Y S F++ R+ V
Sbjct: 180 LEVADSDGANPRTLFRSAKPIMSPDWSPDGRELVYVS----FENRRSEVY---------- 225
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
R+ + + TG N+ P+ SPDG++L R G N+++++ GE
Sbjct: 226 -----RQNVETGSRERVASFTGINSAPAWSPDGRYLALSLSRDGAPNIYLMELETGE--- 277
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF-----------------SLYV 517
+RQ+T I+T P WSP G+ + F+S+R + A +
Sbjct: 278 -MRQMTQTRSIETEPVWSPDGETLYFTSDRAGAPQIYALPREGGSPRRLTFESGYAAAAT 336
Query: 518 IKPDGSGLRRIHVAGPEGS-----GDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSW 572
+ PDG L ++V G +G D++ R+ + D E F N ++ +
Sbjct: 337 VSPDGRYL--VYVHGGDGGFQLARLDLNDRRVTRLTEGRDAESPSFAPNGSMII-----Y 389
Query: 573 PNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGN 611
G L V DG +RL E PAW P N
Sbjct: 390 AMTDGGRGVLGSVSQDGQVHQRLAAREGEVREPAWSPLN 428
>gi|388515823|gb|AFK45973.1| unknown [Medicago truncatula]
Length = 97
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 43/54 (79%)
Query: 556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
++FT++ + AEP+S P+ +QPYG+++ V+LDGSGL RLT N YE+GTPAW P
Sbjct: 1 MVFTSDYAGISAEPISNPHHYQPYGEIFTVRLDGSGLTRLTHNSYEDGTPAWSP 54
>gi|374852052|dbj|BAL54994.1| TolB protein [uncultured planctomycete]
Length = 289
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 98/224 (43%), Gaps = 40/224 (17%)
Query: 336 SFSPDGGLIVFN--HDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYT--- 390
++SPDG IVF H+ +++ + S R T F +W P K + Y
Sbjct: 38 AWSPDGSRIVFTRIHEGKMSLWLLHIASRQLTRLTSRDTGPDFDPAWFPDGKRLAYVYDQ 97
Query: 391 ---STGPIF------QSERATVQIARVSFQLDP-------------SDDNNREEIPCDVK 428
+ G +F TV I +F+ P + D N+E DV
Sbjct: 98 LQGTDGKLFIYTLDSDGSNPTVLIPNKAFEECPRVSPNGQHLLFVSTRDGNQEIYLADVT 157
Query: 429 ILTKEETGN----NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW 484
N + P SPDGK + F S RSG+ +++V++A E R+LTD P
Sbjct: 158 GKNIRRLSNHPAPDTHPCWSPDGKRIAFASARSGNWDIWVMNADGSE----TRRLTDHPA 213
Query: 485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
+D P W+P G +AF+SNR + +Y+I+PDG+ L +
Sbjct: 214 LDCWPVWAPDGRRLAFTSNRDG-----NYEIYLIRPDGTALHNV 252
>gi|392373583|ref|YP_003205416.1| protein tolB [Candidatus Methylomirabilis oxyfera]
gi|258591276|emb|CBE67573.1| Protein tolB precursor [Candidatus Methylomirabilis oxyfera]
Length = 450
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 81/171 (47%), Gaps = 35/171 (20%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW-IDTMPSWSPKGDLIA 499
PS +P+G+ +VF S R G ++++D V G +IR+LT G P WSP+GD I
Sbjct: 301 PSFAPNGRQIVFSSDRGGTPQIYLMD-VEGT---NIRRLTFGVGDYSVSPRWSPRGDKIT 356
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV-CFSADGEWLLF 558
F +F +++I PDG+GL ++ R N +SADG LLF
Sbjct: 357 FVGRTRG-----SFDIFLINPDGTGLTQL----------TSNSRNNEEPSWSADGRHLLF 401
Query: 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
T+ + LYV+K DGS R+LT NG EN W P
Sbjct: 402 TSTRNG--------------HRHLYVMKADGSDQRQLTKNGQENYLADWSP 438
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 46/200 (23%)
Query: 435 TGN---NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491
TGN N P SPDGK + + S R + +LFV+D G ++++ P ++ P+W
Sbjct: 204 TGNHSINLSPRWSPDGKKIAYTSYRDHNPDLFVVDLETGRR----QKISSNPGLNVAPAW 259
Query: 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV---- 547
SP G + FS + N L++I+PD +GLR++ GP H+
Sbjct: 260 SPNGKWLVFSMSSGTGTN-----LFLIRPDATGLRQL-TQGP------------HIDISP 301
Query: 548 CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN-GYENGTPA 606
F+ +G ++F+++ G +Y++ ++G+ +RRLT+ G + +P
Sbjct: 302 SFAPNGRQIVFSSDRGGTP--------------QIYLMDVEGTNIRRLTFGVGDYSVSPR 347
Query: 607 WHP-GNQLD-LGKLRLEDDI 624
W P G+++ +G+ R DI
Sbjct: 348 WSPRGDKITFVGRTRGSFDI 367
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 25/161 (15%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGS--KRWTLIKDRTAFYNSWSPTEKHVIYTST 392
PSF+P+G IVF+ D I + +G+ +R T + WSP + +
Sbjct: 301 PSFAPNGRQIVFSSDRGGTPQIYLMDVEGTNIRRLTFGVGDYSVSPRWSPRGDKITFVG- 359
Query: 393 GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452
R + I F ++P D ++ + + NN PS S DG+ L+F
Sbjct: 360 -----RTRGSFDI----FLINP-DGTGLTQLTSNSR--------NNEEPSWSADGRHLLF 401
Query: 453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
S R+GH++L+V+ A +G D RQLT + + WSP
Sbjct: 402 TSTRNGHRHLYVMKA-DGS---DQRQLTKNGQENYLADWSP 438
Score = 42.4 bits (98), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 41/169 (24%)
Query: 450 LVFRSGRSGHKNLFVLD--AVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR-HN 506
+ + S +G K ++V+D A N +T I+ P WSP G IA++S R HN
Sbjct: 178 IAYVSSVNGAKEIYVMDYDAYNPLL------ITGNHSINLSPRWSPDGKKIAYTSYRDHN 231
Query: 507 PDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV-CFSADGEWLLFTANLGAV 565
PD L+V+ D RR ++ G +N +S +G+WL+F+ + G
Sbjct: 232 PD------LFVV--DLETGRRQKISSNPG--------LNVAPAWSPNGKWLVFSMSSGTG 275
Query: 566 MAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP-GNQL 613
+L++++ D +GLR+LT + + +P++ P G Q+
Sbjct: 276 T--------------NLFLIRPDATGLRQLTQGPHIDISPSFAPNGRQI 310
>gi|83859800|ref|ZP_00953320.1| translocation protein TolB precursor [Oceanicaulis sp. HTCC2633]
gi|83852159|gb|EAP90013.1| translocation protein TolB precursor [Oceanicaulis sp. HTCC2633]
Length = 448
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 137/327 (41%), Gaps = 54/327 (16%)
Query: 298 YHRFRGESTEGQSTIPHLE----PVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN 353
Y R GES + I ++ P P++ L ++ +G+ PSF D + ++ +
Sbjct: 158 YERLTGESGYFDTRIVYVSEGDGPNGEPIRRLAVMDQDGANPSFLTDRSYMALLPNYSPS 217
Query: 354 AG--IKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR---- 407
A ++ DG T++ + ++ S GP SE ++ AR
Sbjct: 218 AQQITYVSFRDGRA--------TSYLYDLETGRQEALFDS-GPSLASEGQSLS-ARFHPN 267
Query: 408 -----VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNL 462
VS + D + ++ ++ PS +PDG+ +VF S R G L
Sbjct: 268 GRELVVSAERHSGHDLFKFDLRSRTLRQLTTHPADDVEPSYAPDGEQVVFSSSRGGQSQL 327
Query: 463 FVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG 522
+V++A +G D +++T G T P WSP+GDLIAF+ R F L V+ DG
Sbjct: 328 YVMNA-DGT---DPQRITFGEGRYTTPVWSPRGDLIAFTKQRSG-----QFMLGVVAADG 378
Query: 523 SGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDL 582
SG RI G ++ +S +G LLFT G E ++ +
Sbjct: 379 SGEERILYEG---------YFVDTPAWSPNGRVLLFTR--GDRTREGTTY--------SI 419
Query: 583 YVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ + L G LRRL G E PAW P
Sbjct: 420 WSIDLAGFNLRRLPTQG-EASDPAWSP 445
>gi|114570966|ref|YP_757646.1| TolB domain-containing protein [Maricaulis maris MCS10]
gi|114341428|gb|ABI66708.1| TolB, N-terminal domain protein [Maricaulis maris MCS10]
Length = 453
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 81/169 (47%), Gaps = 29/169 (17%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS +PDG+ +VF S R G L+V++ D++++T G T P WSP+GDLIAF
Sbjct: 311 PSFAPDGERIVFSSARGGGSQLYVMN----RDGSDVQRITFGSGRYTTPVWSPRGDLIAF 366
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ FSL V++ DGSG+ RI G ++ +S +G LLFT
Sbjct: 367 TKQVGGQ-----FSLGVVRADGSGIERILFEG---------YFVDTPAWSPNGRVLLFTR 412
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G A + +++ V L G LRRL G + PAW P
Sbjct: 413 --GEQRANGTRY--------EIWSVDLAGFNLRRLATGGMAS-DPAWSP 450
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 84/182 (46%), Gaps = 36/182 (19%)
Query: 436 GNNAFPSCSPDGKFL-VFRSGRSGHK-NLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
G + SPDG L V RSGH +LF L N +++LT P D PS++P
Sbjct: 262 GQSLSARFSPDGSELAVSIETRSGHDIHLFDLQTRN------LQRLTQHPADDVEPSFAP 315
Query: 494 KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADG 553
G+ I FSS R LYV+ DGS ++RI GSG R +S G
Sbjct: 316 DGERIVFSSARGGGSQ-----LYVMNRDGSDVQRITF----GSG-----RYTTPVWSPRG 361
Query: 554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+ + FT +G QF L VV+ DGSG+ R+ + GY TPAW P ++
Sbjct: 362 DLIAFTKQVGG----------QFS----LGVVRADGSGIERILFEGYFVDTPAWSPNGRV 407
Query: 614 DL 615
L
Sbjct: 408 LL 409
>gi|253702172|ref|YP_003023361.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Geobacter sp. M21]
gi|251777022|gb|ACT19603.1| Tol-Pal system beta propeller repeat protein TolB [Geobacter sp.
M21]
Length = 407
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 110/254 (43%), Gaps = 60/254 (23%)
Query: 380 WSPTEKHVIYTSTGP----IFQSERATVQIARVS-----------------FQLDPSDDN 418
++P+ K +IYTS +++ E T AR+S + S D
Sbjct: 184 FAPSGKEIIYTSYKKGNPDLYRRELFTGLEARISSRNGLNAMGAYSPDGGKIAMVMSKDG 243
Query: 419 NRE--EIPCDVKILTKEETGNNAF---PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
N E I + K L + T N+A P+ SPDG + F S R G +FV++A
Sbjct: 244 NSEIYLISREGKELARL-TNNHAIDVSPAWSPDGSRIAFVSDRLGKPQVFVMNA----DG 298
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP 533
G++R+LT + P WSPKGD IA++ F ++ I PDG+ ++ AG
Sbjct: 299 GNLRRLTTNGAYNVTPRWSPKGDRIAYARQGGG-----GFQIHAINPDGTQDTQLTSAGS 353
Query: 534 EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR 593
H FS DG +++F++ A +Y+++ DGSG
Sbjct: 354 N----------EHPRFSPDGRFIVFSSTRDGAEA--------------IYLMRADGSGQT 389
Query: 594 RLTWNGYENGTPAW 607
R++ N +N P W
Sbjct: 390 RVSPNKAQNSHPTW 403
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 76/177 (42%), Gaps = 42/177 (23%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497
N P +P GK +++ S + G+ +L+ + F G +++ ++ M ++SP G
Sbjct: 179 NLKPDFAPSGKEIIYTSYKKGNPDLYRREL----FTGLEARISSRNGLNAMGAYSPDGGK 234
Query: 498 IAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV-----CFSAD 552
IA ++ N E +Y+I +G L R+ NH +S D
Sbjct: 235 IAMVMSKDG--NSE---IYLISREGKELARLTN--------------NHAIDVSPAWSPD 275
Query: 553 GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G + F ++ + +P ++V+ DG LRRLT NG N TP W P
Sbjct: 276 GSRIAFVSDR---LGKP-----------QVFVMNADGGNLRRLTTNGAYNVTPRWSP 318
Score = 43.1 bits (100), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 34/209 (16%)
Query: 324 ELRMLRLNG--SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SW 380
E R+ NG + ++SPDGG I + N+ I + +G + L + + +W
Sbjct: 213 EARISSRNGLNAMGAYSPDGGKIAMVMSKDGNSEIYLISREGKELARLTNNHAIDVSPAW 272
Query: 381 SPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAF 440
SP + + S ++ + + +D N + + N
Sbjct: 273 SPDGSRIAFVSD-----------RLGKPQVFVMNADGGNLRRLTTN--------GAYNVT 313
Query: 441 PSCSPDGKFLVF-RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
P SP G + + R G G F + A+N + D + + G + P +SP G I
Sbjct: 314 PRWSPKGDRIAYARQGGGG----FQIHAINPDGTQDTQLTSAGS--NEHPRFSPDGRFIV 367
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
FSS R D EA +Y+++ DGSG R+
Sbjct: 368 FSSTR---DGAEA--IYLMRADGSGQTRV 391
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 32/176 (18%)
Query: 323 KELRMLRLNGSF---PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN- 378
KEL L N + P++SPDG I F D + + +DG L + YN
Sbjct: 255 KELARLTNNHAIDVSPAWSPDGSRIAFVSDRLGKPQVFVMNADGGNLRRLTTN--GAYNV 312
Query: 379 --SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETG 436
WSP + Y G FQ+ + + + D ++ + G
Sbjct: 313 TPRWSPKGDRIAYARQGG-------------GGFQIHAINPDGTQ----DTQLTS---AG 352
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
+N P SPDG+F+VF S R G + ++++ A + +G R ++ ++ P+WS
Sbjct: 353 SNEHPRFSPDGRFIVFSSTRDGAEAIYLMRA---DGSGQTR-VSPNKAQNSHPTWS 404
>gi|407712210|ref|YP_006832775.1| TolB protein [Burkholderia phenoliruptrix BR3459a]
gi|407234394|gb|AFT84593.1| TolB protein [Burkholderia phenoliruptrix BR3459a]
Length = 430
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 112/287 (39%), Gaps = 70/287 (24%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG + + +WSP V Y S F+ ++ V I
Sbjct: 178 LQISDSDGQDAHIALSSPEPIISPAWSPDGTKVAYVS----FEKKKPIVYI--------- 224
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++P +I+ ++ GNN+ P+ SPDG+ L R+G+ +F AVN + +G
Sbjct: 225 ------HDLPTGRRIVVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIF---AVNADGSG 275
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY------------------ 516
+R+LT G IDT P++SP G I F+S+R + S
Sbjct: 276 -LRRLTQGSSIDTEPTFSPDGQTIYFTSDRGGQPQIYKMSAQGESAGAAQRVTFTGSYNT 334
Query: 517 --VIKPDGSGLRRIH------------VAGPEGSGDVDRERINHVCFSADGEWLLFTANL 562
+ PDG L I + G +G D F+A+G+++L+
Sbjct: 335 SPRVSPDGKQLAYISRVGGAFKLYIQDLQGGTATGLTDTTHDESPSFAANGQYILYA--- 391
Query: 563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
Q G L V DG + L+ G P+W P
Sbjct: 392 -----------TQVNGRGVLAAVSTDGRTRQVLSVQGGSVREPSWGP 427
>gi|307728551|ref|YP_003905775.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Burkholderia sp. CCGE1003]
gi|307583086|gb|ADN56484.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia sp.
CCGE1003]
Length = 430
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 103/263 (39%), Gaps = 69/263 (26%)
Query: 379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN 438
+WSP V Y S F+ ++ V I ++P +I+ ++ GNN
Sbjct: 202 AWSPDGTKVAYVS----FEKKKPIVYI---------------HDLPTGRRIVVADQKGNN 242
Query: 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
+ P+ SPDG+ L R+G+ +F AVN + +G +R+LT G IDT P++SP G I
Sbjct: 243 SAPAWSPDGRTLAVALSRTGNTQIF---AVNADGSG-LRRLTQGSSIDTEPTFSPDGQTI 298
Query: 499 AFSSNRHNPDNVEAFSLY--------------------VIKPDGSGLRRIH--------- 529
F+S+R + S + PDG L I
Sbjct: 299 YFTSDRGGQPQIYKMSAQGESAGAAQRVTFTGSYNTSPRVSPDGKQLAYISRVGGGFKLY 358
Query: 530 ---VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVK 586
+ G +G D F+A+G+++L+ Q G L V
Sbjct: 359 IQDLQGGTATGLTDTTHDESPSFAANGQYILYA--------------TQVNGRGVLAAVS 404
Query: 587 LDGSGLRRLTWNGYENGTPAWHP 609
DG + L+ G P+W P
Sbjct: 405 TDGRTRQVLSVQGGSVREPSWGP 427
>gi|323524838|ref|YP_004226991.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Burkholderia sp. CCGE1001]
gi|323381840|gb|ADX53931.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia sp.
CCGE1001]
Length = 430
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 102/263 (38%), Gaps = 69/263 (26%)
Query: 379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN 438
+WSP V Y S F+ ++ V I ++P +I+ ++ GNN
Sbjct: 202 AWSPDGTKVAYVS----FEKKKPIVYI---------------HDLPTGRRIVVSDQKGNN 242
Query: 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
+ P+ SPDG+ L R+G+ +F AVN + G +R+LT G IDT P++SP G I
Sbjct: 243 SAPAWSPDGRTLAVALSRTGNTQIF---AVNADGTG-LRRLTQGSSIDTEPTFSPDGQTI 298
Query: 499 AFSSNRHNPDNVEAFSLY--------------------VIKPDGSGLRRIH--------- 529
F+S+R + S + PDG L I
Sbjct: 299 YFTSDRGGQPQIYKMSAQGESAGAAQRVTFTGSYNTSPRVSPDGKQLAYISRVGGAFKLY 358
Query: 530 ---VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVK 586
+ G +G D F+A+G+++L+ Q G L V
Sbjct: 359 IQDLQGGTATGLTDTTHDESPSFAANGQYILYA--------------TQVNGRGVLAAVS 404
Query: 587 LDGSGLRRLTWNGYENGTPAWHP 609
DG + L+ G P+W P
Sbjct: 405 TDGRTRQVLSVQGGSVREPSWGP 427
>gi|238495088|ref|XP_002378780.1| hypothetical protein AFLA_060360 [Aspergillus flavus NRRL3357]
gi|220695430|gb|EED51773.1| hypothetical protein AFLA_060360 [Aspergillus flavus NRRL3357]
Length = 188
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 87/188 (46%), Gaps = 25/188 (13%)
Query: 435 TGNNAFPSCSPDGKFLVFR-------SGRSGHKNLFVL--DAVNGEFNGDIRQLTDGPWI 485
T N FPS SPDG +VFR G + L +L D V + LT+ W
Sbjct: 17 TLNTGFPSFSPDGTKIVFRVWGADAEDGDTSQLGLRILHLDQVTANGTYPVTVLTN--WW 74
Query: 486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERIN 545
DT+PS+SP G I F R + N E + I PDGS L+ + + + +
Sbjct: 75 DTLPSFSPDGTKIVFM-RRVSGSNYE---VCTIAPDGSDLQVLTSSEADDA--------- 121
Query: 546 HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTP 605
H +S DG + T G +E + N FQPYG + ++ DG R LT + +E+ P
Sbjct: 122 HAVWSHDGRIMYSTGEYG-FQSECALYDNTFQPYGQINIMDADGGNKRALTNSLWEDSMP 180
Query: 606 AWHPGNQL 613
A+ PG L
Sbjct: 181 AYVPGEFL 188
>gi|302038650|ref|YP_003798972.1| protein TolB [Candidatus Nitrospira defluvii]
gi|300606714|emb|CBK43047.1| Protein TolB precursor [Candidatus Nitrospira defluvii]
Length = 443
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 106/252 (42%), Gaps = 49/252 (19%)
Query: 380 WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNA 439
WSP + +++T+ ++ + D + E+ + G N
Sbjct: 217 WSPDRRFIVFTA------------------YRSRNTQDIDILELATGKRWTLVSMAGLNI 258
Query: 440 FPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
P+ SPDG FL F S + G+ ++ LD ++LT D P+WSP G IA
Sbjct: 259 TPALSPDGNFLAFASSQDGNSEIYKLDTRTKT----PQRLTVNQGGDLSPTWSPTGREIA 314
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG---------PEGS--GDVDR--ERINH 546
F+S+R V +++ DGS +RR+ G P G+ V R +R+
Sbjct: 315 FTSDRGGAPQV-----FIMSADGSNVRRLTYEGDYNAAPAWSPRGNWIAYVCRTAQRLYK 369
Query: 547 VC-FSADGEWLLFTANLGAVMAEP--------VSWPNQFQPYGDLYVVKLDGSGLRRLTW 597
+C S DG+ + + P +++ + +Y+V DG GL R+T+
Sbjct: 370 ICTVSPDGQKRVQVTTGPGIDDSPSWSPDGRHITFSSTVDGKSHIYMVDTDGKGLERITF 429
Query: 598 NGYENGTPAWHP 609
G N +P+W P
Sbjct: 430 GGTHNSSPSWSP 441
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 113/268 (42%), Gaps = 37/268 (13%)
Query: 235 PTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFH-------HYNP 287
P ++T G P D +R V T ++RN + I+I +L + + P
Sbjct: 202 PKQITADGFLNLMPRWSPD-RRFIVFTAYRSRNTQDIDILELATGKRWTLVSMAGLNITP 260
Query: 288 FVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFN 347
+S + F+ + S +G S I L+ + L + + P++SP G I F
Sbjct: 261 ALSPDGNFLAF----ASSQDGNSEIYKLDTRTKTPQRLTVNQGGDLSPTWSPTGREIAFT 316
Query: 348 HDFELNAGIKIAKSDGS--KRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQI 405
D + I +DGS +R T D A +WSP + Y + ++ + +I
Sbjct: 317 SDRGGAPQVFIMSADGSNVRRLTYEGDYNA-APAWSPRGNWIAY-----VCRTAQRLYKI 370
Query: 406 ARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVL 465
VS D R ++ G + PS SPDG+ + F S G +++++
Sbjct: 371 CTVS-----PDGQKRVQVTTG--------PGIDDSPSWSPDGRHITFSSTVDGKSHIYMV 417
Query: 466 DAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
D +G+ + ++T G ++ PSWSP
Sbjct: 418 D-TDGK---GLERITFGGTHNSSPSWSP 441
>gi|170691331|ref|ZP_02882496.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
graminis C4D1M]
gi|170143536|gb|EDT11699.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
graminis C4D1M]
Length = 430
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 112/287 (39%), Gaps = 70/287 (24%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG + + +WSP V Y S F+ ++ V I
Sbjct: 178 LQISDSDGQDAHIALSSPEPIISPAWSPDGTKVAYVS----FEKKKPIVYI--------- 224
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++P +I+ ++ GNN+ P+ SPDG+ L R+G+ +F AVN + +G
Sbjct: 225 ------HDLPTGRRIVVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIF---AVNADGSG 275
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY------------------ 516
+R+LT G IDT P++SP G I F+S+R + S
Sbjct: 276 -LRRLTQGSSIDTEPTFSPDGQSIYFTSDRGGQPQIYKMSAQGESAGGAQRVTFTGSYNT 334
Query: 517 --VIKPDGSGLRRIH------------VAGPEGSGDVDRERINHVCFSADGEWLLFTANL 562
+ PDG L I + G +G D F+A+G+++L+
Sbjct: 335 SPRVSPDGKQLAYISRVGGGFKLYIQDLQGGTATGLTDTTHDESPSFAANGQYILYA--- 391
Query: 563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
Q G L V DG + L+ G P+W P
Sbjct: 392 -----------TQVNGRGVLAAVSTDGRTRQVLSVQGGSVREPSWGP 427
>gi|405373187|ref|ZP_11028040.1| tolB protein precursor [Chondromyces apiculatus DSM 436]
gi|397087951|gb|EJJ18968.1| tolB protein precursor [Myxococcus sp. (contaminant ex DSM 436)]
Length = 430
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 113/278 (40%), Gaps = 53/278 (19%)
Query: 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTG 393
P SPDG + F + I + G R + + A ++SP K + Y+
Sbjct: 199 LPGLSPDGTQVAFTTYRKNRPDIYVQSPGGEARAVISGGQMATGAAFSPDGKRIAYS--- 255
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453
+ + E A + +A V D S + + LT G N P+ SPDGK + F
Sbjct: 256 -LAEGESAQIHVANV----DGSGN----------RALTDTPYGLNTSPTFSPDGKRIAFV 300
Query: 454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF 513
S R G ++V++A +G +R+LT + P WSP+GDLI F++ D AF
Sbjct: 301 SNRGGSPQVYVMNA-DGT---SVRRLTFQGNYNQTPDWSPRGDLIVFTAR----DERNAF 352
Query: 514 SLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA--NLGAVMAEPVS 571
L+ I + + R+ D+ FS +G ++FT+ N G+
Sbjct: 353 DLFTINVETGKVTRLT---------QDQGSNEEPAFSPNGRLIVFTSTRNGGS------- 396
Query: 572 WPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
LYV+ DG+ L TP W P
Sbjct: 397 ---------QLYVMTADGNNQLPLRAEKGVYQTPDWSP 425
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 83/200 (41%), Gaps = 39/200 (19%)
Query: 419 NREEIPCD-----VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
NR+ I D + LTK G N P SPDG + F + R +++V
Sbjct: 175 NRDVIVADWDGGNARALTK--GGINILPGLSPDGTQVAFTTYRKNRPDIYVQSP-----G 227
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP 533
G+ R + G + T ++SP G IA+S E+ ++V DGSG R +
Sbjct: 228 GEARAVISGGQMATGAAFSPDGKRIAYSLAEG-----ESAQIHVANVDGSGNRALT---- 278
Query: 534 EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR 593
D FS DG+ + F +N G P +YV+ DG+ +R
Sbjct: 279 ----DTPYGLNTSPTFSPDGKRIAFVSNRGG---SP-----------QVYVMNADGTSVR 320
Query: 594 RLTWNGYENGTPAWHPGNQL 613
RLT+ G N TP W P L
Sbjct: 321 RLTFQGNYNQTPDWSPRGDL 340
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 77/172 (44%), Gaps = 34/172 (19%)
Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW-IDTMPSWSPKGDLIAFSS 502
SPDGK + + + V + V+G N R LTD P+ ++T P++SP G IAF S
Sbjct: 246 SPDGKRIAYSLAEGESAQIHVAN-VDGSGN---RALTDTPYGLNTSPTFSPDGKRIAFVS 301
Query: 503 NRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVC-FSADGEWLLFTAN 561
NR V YV+ DG+ +RR+ G N +S G+ ++FTA
Sbjct: 302 NRGGSPQV-----YVMNADGTSVRRLTFQG----------NYNQTPDWSPRGDLIVFTAR 346
Query: 562 LGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
N F DL+ + ++ + RLT + N PA+ P +L
Sbjct: 347 ---------DERNAF----DLFTINVETGKVTRLTQDQGSNEEPAFSPNGRL 385
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 104/239 (43%), Gaps = 35/239 (14%)
Query: 238 VTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI----YDLTLNPNFHHYNPFVSANS 293
+T G++ P DG ++A T RKNR +++ ++ S +
Sbjct: 191 LTKGGINIL-PGLSPDGTQVAFTTYRKNRPDIYVQSPGGEARAVISGGQMATGAAFSPDG 249
Query: 294 EFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN 353
+ I Y GES Q + +++ + LN S P+FSPDG I F + +
Sbjct: 250 KRIAYSLAEGESA--QIHVANVDGSGNRALTDTPYGLNTS-PTFSPDGKRIAFVSNRGGS 306
Query: 354 AGIKIAKSDGS--KRWTLIKDRTAFYNS---WSPTEKHVIYTSTGPIFQSERATVQIARV 408
+ + +DG+ +R T + YN WSP +++T+ + ER + +
Sbjct: 307 PQVYVMNADGTSVRRLTFQGN----YNQTPDWSPRGDLIVFTA-----RDERNAFDLFTI 357
Query: 409 SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA 467
+ + V LT+++ G+N P+ SP+G+ +VF S R+G L+V+ A
Sbjct: 358 NVET------------GKVTRLTQDQ-GSNEEPAFSPNGRLIVFTSTRNGGSQLYVMTA 403
>gi|168699850|ref|ZP_02732127.1| WD40 domain protein beta Propeller [Gemmata obscuriglobus UQM 2246]
Length = 294
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 96/200 (48%), Gaps = 39/200 (19%)
Query: 337 FSPDGGLIVFNHD-FELNAG---IKIAKSDGSKRWTLIKDRTAFYNS--WSPTEKHVIYT 390
+SPDG IV+ +D E G I + +DGS TLI + AF S +SP K V++
Sbjct: 89 YSPDGTRIVYVYDKLEGTDGKLRIDVCAADGSDNQTLIPHK-AFEESPRFSPDGKTVLWV 147
Query: 391 STGPIFQSERATVQIARVSFQL--DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGK 448
ST A + +L DP+ D P+ SPDGK
Sbjct: 148 STRNKNPDLYAVTAGGKGERRLTNDPAYD---------------------LHPAWSPDGK 186
Query: 449 FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD 508
+ F SGRSG + + V+ A + G +++LTDG ++D+ P W P G+ IAF+SNR
Sbjct: 187 RVAFASGRSGRQKIHVMSA---DGTG-VQKLTDGEFLDSWPVWHPDGERIAFASNRSG-- 240
Query: 509 NVEAFSLYVIKPDGSGLRRI 528
+ ++++ DG LR +
Sbjct: 241 ---NYDIWLMTADGKALRNL 257
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 125/292 (42%), Gaps = 62/292 (21%)
Query: 328 LRLNGSFPS---FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTA--FYNSWSP 382
L +GSF +SPDG ++ E + I + G + L+ T F +SP
Sbjct: 32 LTKDGSFKQNVQWSPDGKTLLLTRIHEGKMALWIMPAAGGEMKRLLPGHTEPHFDGHYSP 91
Query: 383 TEKHVIYTSTGPIFQSERATVQIARVSF-QLDPSDDNNREEIPCDVKILTKEETGNNAF- 440
++Y ++ T R+ D SD N+ IP + AF
Sbjct: 92 DGTRIVY-----VYDKLEGTDGKLRIDVCAADGSD--NQTLIP------------HKAFE 132
Query: 441 --PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
P SPDGK +++ S R+ + +L+ AV G+ R+LT+ P D P+WSP G +
Sbjct: 133 ESPRFSPDGKTVLWVSTRNKNPDLY---AVTAGGKGE-RRLTNDPAYDLHPAWSPDGKRV 188
Query: 499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINH-VCFSADGEWLL 557
AF+S R + +V+ DG+G++++ D E ++ + DGE +
Sbjct: 189 AFASGRSGRQKI-----HVMSADGTGVQKL----------TDGEFLDSWPVWHPDGERIA 233
Query: 558 FTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
F +N D++++ DG LR LT + ++ +PAW P
Sbjct: 234 FASNRSGNY--------------DIWLMTADGKALRNLTGHKAQDTSPAWAP 271
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 94/222 (42%), Gaps = 24/222 (10%)
Query: 284 HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGL 343
H++ S + I Y + E T+G+ I S + L + P FSPDG
Sbjct: 84 HFDGHYSPDGTRIVYVYDKLEGTDGKLRIDVCAADGSDNQTLIPHKAFEESPRFSPDGKT 143
Query: 344 IVFNHDFELNAGIKIAKSDGSKRWTLIKDRT-AFYNSWSPTEKHVIYTSTGPIFQSERAT 402
+++ N + + G L D + +WSP K V + S +S R
Sbjct: 144 VLWVSTRNKNPDLYAVTAGGKGERRLTNDPAYDLHPAWSPDGKRVAFASG----RSGRQK 199
Query: 403 VQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNL 462
+ + S D + D + L +++P PDG+ + F S RSG+ ++
Sbjct: 200 IHVM--------SADGTGVQKLTDGEFL-------DSWPVWHPDGERIAFASNRSGNYDI 244
Query: 463 FVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
+++ A +G+ +R LT DT P+W+P G +AF S R
Sbjct: 245 WLMTA-DGKA---LRNLTGHKAQDTSPAWAPDGKKLAFVSTR 282
>gi|310823648|ref|YP_003956006.1| protein TolB [Stigmatella aurantiaca DW4/3-1]
gi|309396720|gb|ADO74179.1| Protein TolB [Stigmatella aurantiaca DW4/3-1]
Length = 424
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 95/227 (41%), Gaps = 36/227 (15%)
Query: 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTG 393
P+ PDG + F + + K G R + + A ++SP K + Y
Sbjct: 199 LPALGPDG-TVAFTSYRRGQPDLYLQKEGGEARPIVQNGQMATGVAFSPDGKRIAYAQA- 256
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453
Q E + +A V D K +T G N+ PS SPDGK L F
Sbjct: 257 ---QGESTQIYVANVD--------------GSDAKRITDTPYGINSSPSWSPDGKRLAFV 299
Query: 454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF 513
S R G ++V++ V+G + R+LT + P WSP+GDLIAF++ D AF
Sbjct: 300 SNRGGSPQIYVMN-VDGT---NARRLTFQGNYNQTPDWSPRGDLIAFTAR----DERNAF 351
Query: 514 SLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
L+ + D + R+ D+ FS +G +LF++
Sbjct: 352 DLFTVNVDTGKITRLT---------QDQSNNEEPVFSPNGRLILFSS 389
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 78/179 (43%), Gaps = 35/179 (19%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G N P+ PDG + F S R G +L++ + G+ R + + T ++SP G
Sbjct: 195 GINLLPALGPDGT-VAFTSYRRGQPDLYLQ-----KEGGEARPIVQNGQMATGVAFSPDG 248
Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV-CFSADGE 554
IA++ + E+ +YV DGS +RI P G IN +S DG+
Sbjct: 249 KRIAYAQAQG-----ESTQIYVANVDGSDAKRI-TDTPYG--------INSSPSWSPDGK 294
Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
L F +N G +YV+ +DG+ RRLT+ G N TP W P L
Sbjct: 295 RLAFVSNRGGSP--------------QIYVMNVDGTNARRLTFQGNYNQTPDWSPRGDL 339
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 32/173 (18%)
Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW-IDTMPSWSPKGDLIAFSS 502
SPDGK + + + ++V + V+G D +++TD P+ I++ PSWSP G +AF S
Sbjct: 245 SPDGKRIAYAQAQGESTQIYVAN-VDGS---DAKRITDTPYGINSSPSWSPDGKRLAFVS 300
Query: 503 NRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL 562
NR + YV+ DG+ RR+ G R + + F+A E F
Sbjct: 301 NRGGSPQI-----YVMNVDGTNARRLTFQGNYNQTPDWSPRGDLIAFTARDERNAF---- 351
Query: 563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDL 615
DL+ V +D + RLT + N P + P +L L
Sbjct: 352 ------------------DLFTVNVDTGKITRLTQDQSNNEEPVFSPNGRLIL 386
Score = 42.0 bits (97), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 81/201 (40%), Gaps = 35/201 (17%)
Query: 324 ELRMLRLNGSFPS---FSPDGGLIVFNHDFELNAGIKIAKSDGS--KRWTLIKDRTAFYN 378
E R + NG + FSPDG I + + I +A DGS KR T
Sbjct: 228 EARPIVQNGQMATGVAFSPDGKRIAYAQAQGESTQIYVANVDGSDAKRITDTPYGINSSP 287
Query: 379 SWSPTEKHVIYTS----TGPIFQSERATVQIARVSFQLD--------PSDD----NNREE 422
SWSP K + + S + I+ R++FQ + P D R+E
Sbjct: 288 SWSPDGKRLAFVSNRGGSPQIYVMNVDGTNARRLTFQGNYNQTPDWSPRGDLIAFTARDE 347
Query: 423 --------IPCDVKILTK--EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
+ D +T+ ++ NN P SP+G+ ++F S R+G LFV+ A E
Sbjct: 348 RNAFDLFTVNVDTGKITRLTQDQSNNEEPVFSPNGRLILFSSTRTGTPQLFVMTA---EG 404
Query: 473 NGDIRQLTDGPWIDTMPSWSP 493
N + L G P W+P
Sbjct: 405 NNPL-ALPMGKGGGLTPDWAP 424
>gi|121998996|ref|YP_001003783.1| translocation protein TolB [Halorhodospira halophila SL1]
gi|121590401|gb|ABM62981.1| TolB, N-terminal domain protein [Halorhodospira halophila SL1]
Length = 436
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 104/251 (41%), Gaps = 42/251 (16%)
Query: 356 IKIAKSDGSKRWTLI-KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A SDG + T++ D +WSP+ + Y S F+ R+ V +
Sbjct: 189 LVVADSDGHRPQTILTSDEPLLSPAWSPSRDRLAYVS----FEGRRSEVFV--------- 235
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+EI + G N+ P+ SPDG L R G N++++D +G
Sbjct: 236 ------QEIRTGERERVASFRGINSAPAWSPDGDQLAVTLSRDGAANIYLIDVASG---- 285
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-- 532
D+R LTD IDT +W P GD I F+S+R + Y PDGS R+ G
Sbjct: 286 DVRPLTDHWAIDTEATWGPDGDWIYFTSDRGGRPQI-----YRTPPDGSETERVTYDGAY 340
Query: 533 ---PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAE-----PVSWPNQFQPYGDLYV 584
P S D +R + H DG++ + +L + P F P GDL +
Sbjct: 341 NARPSISPDGERMAMVH---RHDGQYYIALQDLDTEAVQIISDGPADESPSFAPNGDLVI 397
Query: 585 VKLDGSGLRRL 595
+ +RL
Sbjct: 398 YTTGDTEGQRL 408
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 44/178 (24%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SP L + S +FV + GE ++ I++ P+WSP GD +A
Sbjct: 212 PAWSPSRDRLAYVSFEGRRSEVFVQEIRTGERE----RVASFRGINSAPAWSPDGDQLAV 267
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINH------VCFSADGE 554
+ +R N+ Y+I SGDV R +H + DG+
Sbjct: 268 TLSRDGAANI-----YLIDV--------------ASGDV-RPLTDHWAIDTEATWGPDGD 307
Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQ 612
W+ FT++ G +P +Y DGS R+T++G N P+ P +
Sbjct: 308 WIYFTSDRGG------------RP--QIYRTPPDGSETERVTYDGAYNARPSISPDGE 351
>gi|288940690|ref|YP_003442930.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Allochromatium vinosum DSM 180]
gi|288896062|gb|ADC61898.1| Tol-Pal system beta propeller repeat protein TolB [Allochromatium
vinosum DSM 180]
Length = 436
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 112/280 (40%), Gaps = 49/280 (17%)
Query: 351 ELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVS 409
+L +++A +DG T++ + +WSP + + Y S F+++RA + I +S
Sbjct: 182 DLTVTLRVADADGYNPQTIVSSAEPLMSPAWSPDGQRLAYVS----FENKRAAIYIQELS 237
Query: 410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN 469
+ R E L G N P+ SPDG L + G+ +++ L+ ++
Sbjct: 238 --------SGRRE-------LVASHPGINGSPAFSPDGSRLAMTLSKDGNPDIYSLNLLS 282
Query: 470 GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH 529
E +LTD IDT PSWSP G I F+S+R + Y + G RI
Sbjct: 283 RELT----RLTDHYAIDTEPSWSPDGQSIIFTSDRGGSPQI-----YRMAATGGPAERIS 333
Query: 530 VAG---------PEGSGDVDRERINHVCFSADGEWLLFTANL---GAVMAEPVSWPNQFQ 577
V G P+G V R+N + L G + P PN
Sbjct: 334 VEGDYNGRASYAPDGRSIVMVTRVNGAFRIGQLDLARGVTRLLSRGDLDESPSFAPNGAM 393
Query: 578 PY--------GDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G L ++G G +RLT + + PAW P
Sbjct: 394 VIYATIHGHRGVLATASVEGGGSQRLTQDSGQVREPAWSP 433
>gi|189346278|ref|YP_001942807.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Chlorobium limicola DSM 245]
gi|189340425|gb|ACD89828.1| Tol-Pal system beta propeller repeat protein TolB [Chlorobium
limicola DSM 245]
Length = 444
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 31/172 (18%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G + P+ SPDGK + F S R+G +FV D +G+ R+LT +T PSWSP G
Sbjct: 300 GIDVSPTFSPDGKQMAFVSSRNGMPQIFVQDVQSGQ----TRRLTYSGRYNTQPSWSPSG 355
Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW 555
D IA+S+ + + +++VI DGSG++R+ SG + E +S DG
Sbjct: 356 DKIAYSTWEKSGE----INIFVINADGSGVKRLT------SGVRENE---SPSWSPDGSM 402
Query: 556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
++FT+N Q LYV+ G RRL E P+W
Sbjct: 403 IVFTSNR--------------QGGKKLYVMSSTGGSQRRLLQMDGEQMQPSW 440
Score = 42.4 bits (98), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 29/137 (21%)
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP 533
G R+LT+ ID P++SP G +AF S+R+ + +V RR+ +G
Sbjct: 290 GISRRLTNSRGIDVSPTFSPDGKQMAFVSSRNGMPQI-----FVQDVQSGQTRRLTYSG- 343
Query: 534 EGSGDVDRERIN-HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL 592
R N +S G+ + ++ +W + +++V+ DGSG+
Sbjct: 344 ---------RYNTQPSWSPSGDKIAYS-----------TWEKSGEI--NIFVINADGSGV 381
Query: 593 RRLTWNGYENGTPAWHP 609
+RLT EN +P+W P
Sbjct: 382 KRLTSGVRENESPSWSP 398
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 31/163 (19%)
Query: 335 PSFSPDGGLIVF--NHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN---SWSPTEKHVIY 389
P+FSPDG + F + + ++ +S ++R T + YN SWSP+ + Y
Sbjct: 305 PTFSPDGKQMAFVSSRNGMPQIFVQDVQSGQTRRLTY----SGRYNTQPSWSPSGDKIAY 360
Query: 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF 449
++ E++ ++ + +D + + + V+ N PS SPDG
Sbjct: 361 STW------EKS----GEINIFVINADGSGVKRLTSGVR--------ENESPSWSPDGSM 402
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
+VF S R G K L+V+ + G R+L PSWS
Sbjct: 403 IVFTSNRQGGKKLYVMSSTGGS----QRRLLQMDGEQMQPSWS 441
>gi|295675612|ref|YP_003604136.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Burkholderia sp. CCGE1002]
gi|295435455|gb|ADG14625.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia sp.
CCGE1002]
Length = 430
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 113/287 (39%), Gaps = 70/287 (24%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG + + +WSP V Y S F+ ++ V I
Sbjct: 178 LQISDSDGQDAHIALSSPEPIISPAWSPDGTKVAYVS----FEKKKPIVYI--------- 224
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++P +I+ ++ GNN+ P+ SPDG+ L R+G+ +F AVN + +G
Sbjct: 225 ------HDLPTGRRIVVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIF---AVNADGSG 275
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR----------------HNPDNVEAFSLY-- 516
+R+LT G IDT P++SP G I F+S+R N V Y
Sbjct: 276 -LRRLTQGSSIDTEPTYSPDGQWIYFTSDRGGAPQIYKMPAQGESAGNAQRVTFTGSYNT 334
Query: 517 --VIKPDGSGLRRIH------------VAGPEGSGDVDRERINHVCFSADGEWLLFTANL 562
+ PDG L I + G +G D F+A+G+++L+
Sbjct: 335 SPRVSPDGKELAYISRVGGGFKLYIQDLQGGTATGLTDTSHDESPSFAANGQYILYA--- 391
Query: 563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
Q G L V DG + L+ G P+W P
Sbjct: 392 -----------TQVNGRGVLAAVSTDGRTRQVLSVQGGSVREPSWGP 427
>gi|148262286|ref|YP_001228992.1| WD40 domain-containing protein [Geobacter uraniireducens Rf4]
gi|146395786|gb|ABQ24419.1| WD40 domain protein beta Propeller [Geobacter uraniireducens Rf4]
Length = 427
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 126/310 (40%), Gaps = 64/310 (20%)
Query: 327 MLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEK 385
ML + G F+ G F N I + DG L K+ + N +SP K
Sbjct: 153 MLAVTGERGPFT---GKTAFVSTATGNKEICLMDYDGYNVQRLTKNGSINLNPDFSPNGK 209
Query: 386 HVIYTS----TGPIFQSERATVQIARVS-----------------FQLDPSDDNNRE--E 422
+IYTS +++ E + AR+S L S D N E
Sbjct: 210 ELIYTSYKRRNPDLYRRELFSGTEARLSARPGINVTGAWSPDGSKIALAMSKDGNSEIYT 269
Query: 423 IPCDVKILTKEETGNNAF---PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL 479
I D K L K T N+A P+ SPDG + F S R G +F+++A ++ +L
Sbjct: 270 ISKDGKQLAKL-TNNSAIEVSPAWSPDGSRIAFVSDRLGKPQVFIMNADGS----NVSRL 324
Query: 480 TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV 539
T + P WSPKGD IA+ F +YVI DGS ++ EGS +
Sbjct: 325 TTSGTYNVSPRWSPKGDRIAYCRQHGG-----GFQIYVINADGSSDVQLT---SEGSNE- 375
Query: 540 DRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNG 599
H +S DG ++ F++ G A +YV++ DGSG R++
Sbjct: 376 ------HPRWSPDGRFITFSSTRGGKEA--------------IYVMRSDGSGQTRVSRGK 415
Query: 600 YENGTPAWHP 609
+ PAW P
Sbjct: 416 GADSHPAWSP 425
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 78/178 (43%), Gaps = 32/178 (17%)
Query: 323 KELRMLRLNGSF---PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN- 378
K+L L N + P++SPDG I F D + I +DGS L T YN
Sbjct: 275 KQLAKLTNNSAIEVSPAWSPDGSRIAFVSDRLGKPQVFIMNADGSNVSRLTTSGT--YNV 332
Query: 379 --SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETG 436
WSP + Y + QI ++ D S D LT E G
Sbjct: 333 SPRWSPKGDRIAYC------RQHGGGFQIYVIN--ADGSSDVQ----------LTSE--G 372
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
+N P SPDG+F+ F S R G + ++V+ + + +G R ++ G D+ P+WSP+
Sbjct: 373 SNEHPRWSPDGRFITFSSTRGGKEAIYVMRS---DGSGQTR-VSRGKGADSHPAWSPR 426
>gi|338536875|ref|YP_004670209.1| tolB protein [Myxococcus fulvus HW-1]
gi|337262971|gb|AEI69131.1| tolB protein [Myxococcus fulvus HW-1]
Length = 428
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 109/278 (39%), Gaps = 53/278 (19%)
Query: 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTG 393
P+ SPDG + F + I + G+ + + + A S+SP K + Y+
Sbjct: 199 LPALSPDGAQVAFTTYRKNRPDIYVQAPGGAAKAVISGGQMATGASFSPDGKRIAYS--- 255
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453
+ + E A V +A + LT G N P+ SPDGK + F
Sbjct: 256 -LAEGESAQVYVANADG--------------SGARALTDTPYGLNTSPTWSPDGKRIAFV 300
Query: 454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF 513
S R G ++V++A +R+LT + P WSP+GDLI F++ D AF
Sbjct: 301 SNRGGSPQVYVMNADGSS----VRRLTFQGNYNQTPDWSPRGDLIVFTAR----DERNAF 352
Query: 514 SLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA--NLGAVMAEPVS 571
L+ I + + R+ D+ FS +G ++FT+ N G+
Sbjct: 353 DLFTINVETGKVTRLT---------QDQGSNEEPAFSPNGRLIVFTSTRNGGS------- 396
Query: 572 WPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
LYV+ DG+ L TP W P
Sbjct: 397 ---------RLYVMTADGNNQLPLRAEKGVYQTPDWAP 425
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 83/200 (41%), Gaps = 39/200 (19%)
Query: 419 NREEIPCD-----VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
NR+ + D + LTK G N P+ SPDG + F + R +++V
Sbjct: 175 NRDVLVADWDGGNARALTK--GGINILPALSPDGAQVAFTTYRKNRPDIYVQAP-----G 227
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP 533
G + + G + T S+SP G IA+S E+ +YV DGSG R +
Sbjct: 228 GAAKAVISGGQMATGASFSPDGKRIAYSLAEG-----ESAQVYVANADGSGARALT---- 278
Query: 534 EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR 593
D +S DG+ + F +N G P +YV+ DGS +R
Sbjct: 279 ----DTPYGLNTSPTWSPDGKRIAFVSNRGG---SP-----------QVYVMNADGSSVR 320
Query: 594 RLTWNGYENGTPAWHPGNQL 613
RLT+ G N TP W P L
Sbjct: 321 RLTFQGNYNQTPDWSPRGDL 340
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 78/174 (44%), Gaps = 34/174 (19%)
Query: 442 SCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW-IDTMPSWSPKGDLIAF 500
S SPDGK + + ++V N + +G R LTD P+ ++T P+WSP G IAF
Sbjct: 244 SFSPDGKRIAYSLAEGESAQVYV---ANADGSG-ARALTDTPYGLNTSPTWSPDGKRIAF 299
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVC-FSADGEWLLFT 559
SNR V YV+ DGS +RR+ G N +S G+ ++FT
Sbjct: 300 VSNRGGSPQV-----YVMNADGSSVRRLTFQG----------NYNQTPDWSPRGDLIVFT 344
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
A N F DL+ + ++ + RLT + N PA+ P +L
Sbjct: 345 AR---------DERNAF----DLFTINVETGKVTRLTQDQGSNEEPAFSPNGRL 385
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 104/239 (43%), Gaps = 35/239 (14%)
Query: 238 VTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI----YDLTLNPNFHHYNPFVSANS 293
+T G++ PA DG ++A T RKNR +++ ++ S +
Sbjct: 191 LTKGGINIL-PALSPDGAQVAFTTYRKNRPDIYVQAPGGAAKAVISGGQMATGASFSPDG 249
Query: 294 EFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN 353
+ I Y GES Q + + + + LN S P++SPDG I F + +
Sbjct: 250 KRIAYSLAEGESA--QVYVANADGSGARALTDTPYGLNTS-PTWSPDGKRIAFVSNRGGS 306
Query: 354 AGIKIAKSDGS--KRWTLIKDRTAFYNS---WSPTEKHVIYTSTGPIFQSERATVQIARV 408
+ + +DGS +R T + YN WSP +++T+ + ER + +
Sbjct: 307 PQVYVMNADGSSVRRLTFQGN----YNQTPDWSPRGDLIVFTA-----RDERNAFDLFTI 357
Query: 409 SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA 467
+ + V LT+++ G+N P+ SP+G+ +VF S R+G L+V+ A
Sbjct: 358 NVET------------GKVTRLTQDQ-GSNEEPAFSPNGRLIVFTSTRNGGSRLYVMTA 403
>gi|115378912|ref|ZP_01466048.1| protein TolB [Stigmatella aurantiaca DW4/3-1]
gi|115364091|gb|EAU63190.1| protein TolB [Stigmatella aurantiaca DW4/3-1]
Length = 366
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 95/227 (41%), Gaps = 36/227 (15%)
Query: 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTG 393
P+ PDG + F + + K G R + + A ++SP K + Y
Sbjct: 141 LPALGPDG-TVAFTSYRRGQPDLYLQKEGGEARPIVQNGQMATGVAFSPDGKRIAYAQA- 198
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453
Q E + +A V D K +T G N+ PS SPDGK L F
Sbjct: 199 ---QGESTQIYVANVD--------------GSDAKRITDTPYGINSSPSWSPDGKRLAFV 241
Query: 454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF 513
S R G ++V++ V+G + R+LT + P WSP+GDLIAF++ D AF
Sbjct: 242 SNRGGSPQIYVMN-VDGT---NARRLTFQGNYNQTPDWSPRGDLIAFTAR----DERNAF 293
Query: 514 SLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
L+ + D + R+ D+ FS +G +LF++
Sbjct: 294 DLFTVNVDTGKITRLT---------QDQSNNEEPVFSPNGRLILFSS 331
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 79/179 (44%), Gaps = 35/179 (19%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G N P+ PDG + F S R G +L++ + G+ R + + T ++SP G
Sbjct: 137 GINLLPALGPDGT-VAFTSYRRGQPDLYLQ-----KEGGEARPIVQNGQMATGVAFSPDG 190
Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV-CFSADGE 554
IA++ + E+ +YV DGS +RI P G IN +S DG+
Sbjct: 191 KRIAYAQAQG-----ESTQIYVANVDGSDAKRI-TDTPYG--------INSSPSWSPDGK 236
Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
L F +N G P +YV+ +DG+ RRLT+ G N TP W P L
Sbjct: 237 RLAFVSNRGG---SP-----------QIYVMNVDGTNARRLTFQGNYNQTPDWSPRGDL 281
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 32/173 (18%)
Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW-IDTMPSWSPKGDLIAFSS 502
SPDGK + + + ++V + V+G D +++TD P+ I++ PSWSP G +AF S
Sbjct: 187 SPDGKRIAYAQAQGESTQIYVAN-VDGS---DAKRITDTPYGINSSPSWSPDGKRLAFVS 242
Query: 503 NRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL 562
NR + YV+ DG+ RR+ G R + + F+A E F
Sbjct: 243 NRGGSPQI-----YVMNVDGTNARRLTFQGNYNQTPDWSPRGDLIAFTARDERNAF---- 293
Query: 563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDL 615
DL+ V +D + RLT + N P + P +L L
Sbjct: 294 ------------------DLFTVNVDTGKITRLTQDQSNNEEPVFSPNGRLIL 328
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 81/201 (40%), Gaps = 35/201 (17%)
Query: 324 ELRMLRLNGSFPS---FSPDGGLIVFNHDFELNAGIKIAKSDGS--KRWTLIKDRTAFYN 378
E R + NG + FSPDG I + + I +A DGS KR T
Sbjct: 170 EARPIVQNGQMATGVAFSPDGKRIAYAQAQGESTQIYVANVDGSDAKRITDTPYGINSSP 229
Query: 379 SWSPTEKHVIYTS----TGPIFQSERATVQIARVSFQLD--------PSDD----NNREE 422
SWSP K + + S + I+ R++FQ + P D R+E
Sbjct: 230 SWSPDGKRLAFVSNRGGSPQIYVMNVDGTNARRLTFQGNYNQTPDWSPRGDLIAFTARDE 289
Query: 423 --------IPCDVKILTK--EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
+ D +T+ ++ NN P SP+G+ ++F S R+G LFV+ A E
Sbjct: 290 RNAFDLFTVNVDTGKITRLTQDQSNNEEPVFSPNGRLILFSSTRTGTPQLFVMTA---EG 346
Query: 473 NGDIRQLTDGPWIDTMPSWSP 493
N + L G P W+P
Sbjct: 347 NNPL-ALPMGKGGGLTPDWAP 366
>gi|95929959|ref|ZP_01312699.1| TolB-like [Desulfuromonas acetoxidans DSM 684]
gi|95133928|gb|EAT15587.1| TolB-like [Desulfuromonas acetoxidans DSM 684]
Length = 433
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 143/335 (42%), Gaps = 68/335 (20%)
Query: 299 HRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKI 358
H +RG+ + + +A +L + L G +F+ I F + + + +
Sbjct: 137 HNYRGQ-------VSDVRRMAHSFADLILEALTGKSGAFNTR---IAFISNQSGHKELYL 186
Query: 359 AKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGP----IFQSERATVQIARVS---- 409
+SDG + R+ N +SP + VI+TS +++ E T + AR+S
Sbjct: 187 MESDGYDPKRITNHRSLVLNPDFSPLGREVIFTSYRQGNPDLYRKEIYTGKEARISRYKG 246
Query: 410 -------------FQLDPSDDNNRE-EIPCDVKILTKEETGNNAF---PSCSPDGKFLVF 452
L S D N E + L K T + A PS SP G LVF
Sbjct: 247 LNISGRYRHDGRELALTLSRDGNAEIYLESLSGQLHKRVTNSWAIDVDPSWSPIGDQLVF 306
Query: 453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA 512
S R G+ NLFV D ++G+ +R+LT + P+WSP G I FS A
Sbjct: 307 VSNRQGNPNLFVADLIDGQ----VRRLTYNGKYNATPAWSPDGKRIVFSRLEGG-----A 357
Query: 513 FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSW 572
F+L+ I DG R++ G+G+ + H +S DG +++++ ++ A
Sbjct: 358 FNLFSIGVDGKEERQLTF----GAGNKE-----HPRWSPDGRFIVYSNDISGKKA----- 403
Query: 573 PNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
+YV++ DGSG RR++ + PAW
Sbjct: 404 ---------IYVMRADGSGQRRISTLDADCSHPAW 429
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 78/181 (43%), Gaps = 30/181 (16%)
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNG-DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD 508
+ F S +SGHK L+++ E +G D +++T+ + P +SP G + F+S R
Sbjct: 172 IAFISNQSGHKELYLM-----ESDGYDPKRITNHRSLVLNPDFSPLGREVIFTSYRQGNP 226
Query: 509 NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRE-RINHVCFSADGEWLLFTANLGAVMA 567
++ +Y G R G SG + R + S DG ++ +L +
Sbjct: 227 DLYRKEIYT----GKEARISRYKGLNISGRYRHDGRELALTLSRDGNAEIYLESLSGQLH 282
Query: 568 EPV--SWPN----QFQPYGD-------------LYVVKLDGSGLRRLTWNGYENGTPAWH 608
+ V SW + P GD L+V L +RRLT+NG N TPAW
Sbjct: 283 KRVTNSWAIDVDPSWSPIGDQLVFVSNRQGNPNLFVADLIDGQVRRLTYNGKYNATPAWS 342
Query: 609 P 609
P
Sbjct: 343 P 343
>gi|159043660|ref|YP_001532454.1| translocation protein TolB [Dinoroseobacter shibae DFL 12]
gi|189035981|sp|A8LHQ6.1|TOLB_DINSH RecName: Full=Protein TolB; Flags: Precursor
gi|157911420|gb|ABV92853.1| Tol-Pal system beta propeller repeat TolB [Dinoroseobacter shibae
DFL 12]
Length = 446
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 78/169 (46%), Gaps = 31/169 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG+ +VF S RSG + L+V+ A GE R+++ GP P WSP+GDLIAF
Sbjct: 306 PSFSPDGRQIVFESDRSGSQQLYVMSATGGE----ARRISFGPGRYGTPVWSPRGDLIAF 361
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ N F + V++ DGS R + S +D +S +G ++FT
Sbjct: 362 TKQ-----NQGRFHIGVMRTDGSEERLLT------SSFLD----ESPTWSPNGRVIMFTR 406
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
P LY V + G LRR+ G + PAW P
Sbjct: 407 ETSGAGGAP-----------SLYSVDISGRNLRRVPTPGAAS-DPAWSP 443
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 80/187 (42%), Gaps = 34/187 (18%)
Query: 430 LTKEETGNNAF-PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTM 488
L + G +F P SPDG+ +VF G+ +++ D +G +LT P I+T
Sbjct: 250 LGSAQGGEMSFAPRFSPDGRSVVFSLTNGGNSDIYRRDLSSGAQT----RLTATPAIETA 305
Query: 489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVC 548
PS+SP G I F S+R LYV+ G RRI GP R
Sbjct: 306 PSFSPDGRQIVFESDRSGSQQ-----LYVMSATGGEARRISF-GP--------GRYGTPV 351
Query: 549 FSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWH 608
+S G+ + FT Q Q + V++ DGS R LT + + + +P W
Sbjct: 352 WSPRGDLIAFT--------------KQNQGRFHIGVMRTDGSEERLLT-SSFLDESPTWS 396
Query: 609 PGNQLDL 615
P ++ +
Sbjct: 397 PNGRVIM 403
>gi|91781923|ref|YP_557129.1| translocation protein TolB [Burkholderia xenovorans LB400]
gi|118574575|sp|Q145B2.1|TOLB_BURXL RecName: Full=Protein TolB; Flags: Precursor
gi|91685877|gb|ABE29077.1| Putative periplasmic TolB protein [Burkholderia xenovorans LB400]
Length = 430
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 111/287 (38%), Gaps = 70/287 (24%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG + + +WSP V Y S F+ ++ V I
Sbjct: 178 LQISDSDGQDAHIALSSPEPIISPAWSPDGTKVAYVS----FEKKKPIVYI--------- 224
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++P +I+ ++ GNN+ P+ SPDG+ L R+G+ +F AVN + +G
Sbjct: 225 ------HDLPTGRRIVVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIF---AVNADGSG 275
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY------------------ 516
+R+LT G IDT P +SP G I F+S+R + S
Sbjct: 276 -LRRLTQGSSIDTEPCFSPDGQSIYFTSDRGGQPQIYKMSAQGENAGAAQRVTFTGSYNT 334
Query: 517 --VIKPDGSGLRRIH------------VAGPEGSGDVDRERINHVCFSADGEWLLFTANL 562
+ PDG L I + G +G D F+A+G+++L+
Sbjct: 335 SPRVSPDGKQLAYISRVGGGFKLYIQDLQGNTATGLTDTTHDESPSFAANGQYILYA--- 391
Query: 563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
Q G L V DG + L+ G P+W P
Sbjct: 392 -----------TQVNGRGVLAAVSTDGRTRQVLSVQGGSVREPSWGP 427
>gi|385206744|ref|ZP_10033612.1| tol-pal system beta propeller repeat protein TolB [Burkholderia sp.
Ch1-1]
gi|385179082|gb|EIF28358.1| tol-pal system beta propeller repeat protein TolB [Burkholderia sp.
Ch1-1]
Length = 430
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 111/287 (38%), Gaps = 70/287 (24%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG + + +WSP V Y S F+ ++ V I
Sbjct: 178 LQISDSDGQDAHIALSSPEPIISPAWSPDGTKVAYVS----FEKKKPIVYI--------- 224
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++P +I+ ++ GNN+ P+ SPDG+ L R+G+ +F AVN + +G
Sbjct: 225 ------HDLPTGRRIVVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIF---AVNADGSG 275
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY------------------ 516
+R+LT G IDT P +SP G I F+S+R + S
Sbjct: 276 -LRRLTQGSSIDTEPCFSPDGQSIYFTSDRGGQPQIYKMSAQGENAGAAQRVTFTGSYNT 334
Query: 517 --VIKPDGSGLRRIH------------VAGPEGSGDVDRERINHVCFSADGEWLLFTANL 562
+ PDG L I + G +G D F+A+G+++L+
Sbjct: 335 SPRVSPDGKQLAYISRVGGGFKLYIQDLQGNTATGLTDTTHDESPSFAANGQYILYA--- 391
Query: 563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
Q G L V DG + L+ G P+W P
Sbjct: 392 -----------TQVNGRGVLAAVSTDGRTRQVLSVQGGSVREPSWGP 427
>gi|300786706|ref|YP_003766997.1| TolB-related protein [Amycolatopsis mediterranei U32]
gi|384150037|ref|YP_005532853.1| TolB-related protein [Amycolatopsis mediterranei S699]
gi|399538589|ref|YP_006551251.1| TolB-related protein [Amycolatopsis mediterranei S699]
gi|299796220|gb|ADJ46595.1| TolB-related protein [Amycolatopsis mediterranei U32]
gi|340528191|gb|AEK43396.1| TolB-related protein [Amycolatopsis mediterranei S699]
gi|398319359|gb|AFO78306.1| TolB-related protein [Amycolatopsis mediterranei S699]
Length = 1342
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 81/186 (43%), Gaps = 33/186 (17%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG+ + F S R+G + LFV+ V+G +RQ+T GP D PSWSP G +AF
Sbjct: 124 PALSPDGRTVAFASERTGSRKLFVI-GVDGR---GLRQVTSGPATDDSPSWSPDGTRLAF 179
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
SS R +P A +Y + DG R+ D + + FT
Sbjct: 180 SSTRDDP----AGDIYTVGVDGGTPARLT---------TDPAADTQPAWGP--ARIAFTT 224
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRL 620
+F P GD+ ++ G + R + ++ PAW P +L R
Sbjct: 225 -------------TRFHPAGDVVLMAEAGGAVTRAVPDPGDSSEPAWSPDGRLAF-TTRA 270
Query: 621 EDDIGD 626
+D GD
Sbjct: 271 KDPSGD 276
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 27/132 (20%)
Query: 478 QLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSG 537
QLT+ +D P+ SP G +AF+S R + L+VI DG GLR++ +GP
Sbjct: 113 QLTNDDAVDLHPALSPDGRTVAFASERTG-----SRKLFVIGVDGRGLRQV-TSGPATD- 165
Query: 538 DVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW 597
+ +S DG L F++ + P GD+Y V +DG RLT
Sbjct: 166 -------DSPSWSPDGTRLAFSST-------------RDDPAGDIYTVGVDGGTPARLTT 205
Query: 598 NGYENGTPAWHP 609
+ + PAW P
Sbjct: 206 DPAADTQPAWGP 217
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 72/181 (39%), Gaps = 20/181 (11%)
Query: 374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREE---IPCDVKIL 430
TA + TE V+ G ++ E V +A + P N PC V
Sbjct: 841 TATGRGGTATESAVVSVDPGGEYRQELWQVALAAGPDSVVPGTQRNLSPSFGTPCGV--- 897
Query: 431 TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS 490
G SPDG LVF++ RS L V A G ++ +G ++ P+
Sbjct: 898 -----GRQGSADVSPDGAALVFQNDRS---QLCVAPADGGRARVLVQSGDEGESLND-PA 948
Query: 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS 550
WSP G L+A+ S E+ +I P G R + GP G+G +R+ V +
Sbjct: 949 WSPDGTLVAYDSAFS-----ESVPSILIVPSAGGTPRPLIDGPGGAGQPAFQRVADVGVT 1003
Query: 551 A 551
A
Sbjct: 1004 A 1004
>gi|347754745|ref|YP_004862309.1| periplasmic component of the Tol biopolymer transport system
[Candidatus Chloracidobacterium thermophilum B]
gi|347587263|gb|AEP11793.1| Periplasmic component of the Tol biopolymer transport system
[Candidatus Chloracidobacterium thermophilum B]
Length = 355
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 145/341 (42%), Gaps = 51/341 (14%)
Query: 313 PHLEPVASPVKELRMLRLNGSFPS--FSPDGGLIVFN--HDFELNAGIKIAKSDGSKRW- 367
P L+P + + LR L G FS DG +VF D I + + G+++
Sbjct: 34 PRLDPRETHLANLRQLTFGGENAEAYFSFDGKQLVFQSTRDGRACDQIYVMDATGARQRM 93
Query: 368 --TLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR-VSFQLDPSDDNNREEIP 424
T + T Y + +H+IY+ST + +R + L P D + +
Sbjct: 94 VSTGLGRTTCAY--FLRDGRHIIYSSTHLAQRECPPRPDFSRGYVWALYPGYDIFKASLD 151
Query: 425 CDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW 484
+ + G +A + SPDGK +VF S RSG L+++D +G+ ++RQLT P
Sbjct: 152 GKRLVRLTDAPGYDAEATVSPDGKHIVFTSDRSGDLELYIMD-TDGK---NLRQLTHTPG 207
Query: 485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAF--------------SLYVIKPDGSGLRRIHV 530
D +S G I + ++R +E + +YV+ DGS +RR+
Sbjct: 208 YDGGAFFSHDGKQIVWRASRPEGAELEEYRALLREHLIRPSRLDIYVMNVDGSNVRRLTN 267
Query: 531 AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590
G F+ D ++F++N M +P F+ LY+V LDG+
Sbjct: 268 NGKANFAPF---------FTPDDRKVIFSSN----MDDPQG--RNFE----LYLVNLDGT 308
Query: 591 GLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQ 631
GL R+T+ +G P + P D KL + + RG+
Sbjct: 309 GLERVTYEETFDGFPMFSP----DGKKLVFASNRNGRARGE 345
>gi|187922764|ref|YP_001894406.1| translocation protein TolB [Burkholderia phytofirmans PsJN]
gi|226705872|sp|B2T077.1|TOLB_BURPP RecName: Full=Protein TolB; Flags: Precursor
gi|187713958|gb|ACD15182.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
phytofirmans PsJN]
Length = 430
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 111/287 (38%), Gaps = 70/287 (24%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG + + +WSP V Y S F+ ++ V I
Sbjct: 178 LQISDSDGQDAHIALSSPEPIISPAWSPDGTKVAYVS----FEKKKPIVYI--------- 224
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++P +++ ++ GNN+ P+ SPDG+ L R+G+ +F AVN + +G
Sbjct: 225 ------HDLPTGRRVVVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIF---AVNADGSG 275
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY------------------ 516
+R+LT G IDT P +SP G I F+S+R + S
Sbjct: 276 -LRRLTQGSSIDTEPCFSPDGQSIYFTSDRGGQPQIYKMSAQGENAGAAQRVTFTGSYNT 334
Query: 517 --VIKPDGSGLRRIH------------VAGPEGSGDVDRERINHVCFSADGEWLLFTANL 562
+ PDG L I + G +G D F+A+G+++L+
Sbjct: 335 SPRVSPDGKQLAYISRVGGGFKLYIQDLQGNTATGLTDTTHDESPSFAANGQYILYA--- 391
Query: 563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
Q G L V DG + L+ G P+W P
Sbjct: 392 -----------TQVNGRGVLAAVSTDGRTRQVLSVQGGSVREPSWGP 427
>gi|440749758|ref|ZP_20929004.1| tolB protein precursor, periplasmic protein [Mariniradius
saccharolyticus AK6]
gi|436482044|gb|ELP38190.1| tolB protein precursor, periplasmic protein [Mariniradius
saccharolyticus AK6]
Length = 761
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 86/180 (47%), Gaps = 26/180 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
N+ F S DGK +VFRSGRSG+ ++++ + N + LT D P+ S +GD
Sbjct: 597 NDGFGDISEDGK-MVFRSGRSGYFDIYL------KTNDETINLTQDSHRDNFPAISKQGD 649
Query: 497 LIAFSSNRHNPDN----VEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD 552
I FSS+R + ++ F L +KPDG+ ++ G H FS D
Sbjct: 650 KIVFSSDRLRTEQEYKTMDIF-LMSLKPDGTWTEPEIISIGSGQN-------AHAHFSPD 701
Query: 553 GEWLLFTA-----NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
GEW+++T N + +P+ + Q YG++ + RLT N +E GTP W
Sbjct: 702 GEWVIYTTEGYGINDEQALIQPIIFSPQM--YGEIVAYNVQTKERIRLTHNKWEEGTPLW 759
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 23/171 (13%)
Query: 443 CSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
SPDGK++VF S RSG L+V A++G + + L ++SP G +AF +
Sbjct: 64 ISPDGKWVVFTSERSGIPQLYV-QAIDGNYPPSL--LIKSKSFQDQATFSPDGSQLAFVA 120
Query: 503 NRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV------CFSADGEWL 556
+ + Y+I ++ I +A + NH FS DG+ +
Sbjct: 121 SHEGNSEI-----YLIPFLPDSIQDIQIA---------KNLTNHPSGDFRPAFSPDGQRI 166
Query: 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
F+++ + +P Q GD+Y V + G RLT + + +G+P W
Sbjct: 167 AFSSDRDHEIVPHPQFPFARQRIGDIYSVDISGENPTRLTNSEFWDGSPRW 217
>gi|189500640|ref|YP_001960110.1| WD40 domain-containing protein beta Propeller [Chlorobium
phaeobacteroides BS1]
gi|189496081|gb|ACE04629.1| WD40 domain protein beta Propeller [Chlorobium phaeobacteroides
BS1]
Length = 444
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 109/245 (44%), Gaps = 57/245 (23%)
Query: 386 HVIYTSTGPIFQ----SERATVQIARVSFQLDP-------------SDDNNRE-----EI 423
++ YT P Q S++ V + R ++DP S D N+E +
Sbjct: 230 YLTYTRGRPDLQIKDLSKKTVVSVTRKGVKIDPAWRKGSTELATTFSFDGNQEIYLVRKN 289
Query: 424 PCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP 483
V+ LT++ G + PS SPDG+++ F S R G +F++D +N +G ++LT
Sbjct: 290 GSIVRRLTRDR-GIDLSPSFSPDGRYMAFVSSRHGLPQVFIMD-LN---SGSTKRLTFKG 344
Query: 484 WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRER 543
+T P+WSP D IAF++ + N + ++ + DG+GL+++ R R
Sbjct: 345 KYNTQPAWSPVNDKIAFTTMQKNGE----IDIFTVNADGTGLKQLTY----------RAR 390
Query: 544 INHV-CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
N +S DG ++F+++ G LYV+ DG R L G E
Sbjct: 391 QNEAPSWSPDGTMIVFSSSRGGA--------------SKLYVMNADGRNQRSLKLAG-EQ 435
Query: 603 GTPAW 607
P W
Sbjct: 436 MQPCW 440
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 114/297 (38%), Gaps = 73/297 (24%)
Query: 194 GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHD 253
G P+ G Y R+ +G I+ F G+ P VT G TPA D
Sbjct: 175 GKPSIFGSKIAYVSRR--NGKKEIYLADFD------GYGEVP--VTRTGGLALTPALSSD 224
Query: 254 GKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYH-RFRGESTEGQSTI 312
G +LA T + R ++I DL+ VS + + +R STE +T
Sbjct: 225 GSQLAYLTYTRGRP--DLQIKDLS-------KKTVVSVTRKGVKIDPAWRKGSTELATTF 275
Query: 313 PHLEPVASPVKELRMLRLNGSF-------------PSFSPDGGLIVFNHD---------F 350
+E+ ++R NGS PSFSPDG + F
Sbjct: 276 SF-----DGNQEIYLVRKNGSIVRRLTRDRGIDLSPSFSPDGRYMAFVSSRHGLPQVFIM 330
Query: 351 ELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410
+LN+G +KR T K + +WSP + +T+ + + I V+
Sbjct: 331 DLNSG-------STKRLTF-KGKYNTQPAWSPVNDKIAFTT-----MQKNGEIDIFTVN- 376
Query: 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA 467
+D +K LT N A PS SPDG +VF S R G L+V++A
Sbjct: 377 ----ADGTG-------LKQLTYRARQNEA-PSWSPDGTMIVFSSSRGGASKLYVMNA 421
>gi|442771455|gb|AGC72141.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [uncultured
bacterium A1Q1_fos_560]
Length = 440
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 31/196 (15%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G N P+ SPDG FL F S + G+ ++ LD ++LT D PSWSP G
Sbjct: 252 GLNITPALSPDGNFLAFASSQDGNSEIYKLDTRTKAS----QRLTVNQGGDLSPSWSPTG 307
Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG---------PEGS--GDVDR--E 542
+AF+S+R A ++V+ DGS +RR+ G P G+ V R +
Sbjct: 308 RELAFTSDRGG-----APQIFVMSADGSNVRRLTYEGDYNAAPAWSPRGNWIAYVCRTAQ 362
Query: 543 RINHVCF-SADGEWLLFTANLGAVMAEP--------VSWPNQFQPYGDLYVVKLDGSGLR 593
R+ VC S DG+ + + P +++ + +Y+V DG L
Sbjct: 363 RLYKVCIVSPDGQKRVQVTTGPGIDDSPSWSPDGRHLTFSSTVDGKSHIYMVDTDGKNLE 422
Query: 594 RLTWNGYENGTPAWHP 609
R+T+ G N +P+W P
Sbjct: 423 RITFGGTHNSSPSWSP 438
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 110/260 (42%), Gaps = 39/260 (15%)
Query: 282 FHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDG 341
F + P S + FI + +R +T+ I LE L + P+ SPDG
Sbjct: 207 FLNLMPRWSPDRRFIVFTAYRSRNTQ---DIDILELATGKRWTLVSMPGLNITPALSPDG 263
Query: 342 GLIVFNHDFELNAGI-KI-AKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSE 399
+ F + N+ I K+ ++ S+R T + SWSPT + + +TS
Sbjct: 264 NFLAFASSQDGNSEIYKLDTRTKASQRLT-VNQGGDLSPSWSPTGRELAFTS------DR 316
Query: 400 RATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF--RSGRS 457
QI +S +D +N V+ LT E NA P+ SP G ++ + R+ +
Sbjct: 317 GGAPQIFVMS-----ADGSN-------VRRLTYEGD-YNAAPAWSPRGNWIAYVCRTAQR 363
Query: 458 GHKNLFVLDAVNGEFNGDIR-QLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY 516
+K V +G R Q+T GP ID PSWSP G + FSS ++ Y
Sbjct: 364 LYKVCIV------SPDGQKRVQVTTGPGIDDSPSWSPDGRHLTFSSTVDGKSHI-----Y 412
Query: 517 VIKPDGSGLRRIHVAGPEGS 536
++ DG L RI G S
Sbjct: 413 MVDTDGKNLERITFGGTHNS 432
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 114/268 (42%), Gaps = 37/268 (13%)
Query: 235 PTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFH-------HYNP 287
P ++T G P D +R V T ++RN + I+I +L + + P
Sbjct: 199 PKQITADGFLNLMPRWSPD-RRFIVFTAYRSRNTQDIDILELATGKRWTLVSMPGLNITP 257
Query: 288 FVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFN 347
+S + F+ + S +G S I L+ + L + + PS+SP G + F
Sbjct: 258 ALSPDGNFLAF----ASSQDGNSEIYKLDTRTKASQRLTVNQGGDLSPSWSPTGRELAFT 313
Query: 348 HDFELNAGIKIAKSDGS--KRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQI 405
D I + +DGS +R T D A +WSP + Y + ++ + ++
Sbjct: 314 SDRGGAPQIFVMSADGSNVRRLTYEGDYNA-APAWSPRGNWIAY-----VCRTAQRLYKV 367
Query: 406 ARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVL 465
VS D R ++ G + PS SPDG+ L F S G +++++
Sbjct: 368 CIVS-----PDGQKRVQVTTG--------PGIDDSPSWSPDGRHLTFSSTVDGKSHIYMV 414
Query: 466 DAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
D +G+ ++ ++T G ++ PSWSP
Sbjct: 415 DT-DGK---NLERITFGGTHNSSPSWSP 438
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 33/173 (19%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGH-KNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
N P SPD +F+VF + RS + +++ +L+ G+ L P ++ P+ SP G+
Sbjct: 209 NLMPRWSPDRRFIVFTAYRSRNTQDIDILELATGKR----WTLVSMPGLNITPALSPDGN 264
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ N E +Y + +R+ V GD+ +S G L
Sbjct: 265 FLAFASSQDG--NSE---IYKLDTRTKASQRLTV---NQGGDLSP------SWSPTGREL 310
Query: 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
FT++ G ++V+ DGS +RRLT+ G N PAW P
Sbjct: 311 AFTSDRGGAP--------------QIFVMSADGSNVRRLTYEGDYNAAPAWSP 349
>gi|78189865|ref|YP_380203.1| TolB protein [Chlorobium chlorochromatii CaD3]
gi|119371039|sp|Q3APB5.1|TOLB_CHLCH RecName: Full=Protein TolB; Flags: Precursor
gi|78172064|gb|ABB29160.1| TolB protein, putative [Chlorobium chlorochromatii CaD3]
Length = 440
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 95/222 (42%), Gaps = 47/222 (21%)
Query: 402 TVQIARVSFQLDPSDDNNRE----------------EIPCDVKILTKEETGNNAFPSCSP 445
T ++A+ +DP+ N+RE + VK +G + P+ SP
Sbjct: 245 TTRVAKKGNSIDPAWRNSRELATTFSFEGDQELYLLDSAGAVKQRLTSSSGIDLSPTFSP 304
Query: 446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH 505
DG+ + F S RSG+ +FV D +G+ ++LT +T P+WSP GD IAFS+
Sbjct: 305 DGRKMAFVSARSGNPQIFVYDFSSGK----SQRLTFSGRYNTQPAWSPIGDKIAFSTWES 360
Query: 506 NPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV 565
+ +++VI DGSGL ++ E +S DG ++F +N
Sbjct: 361 GGE----INIFVINTDGSGLTQLTTQSGEN---------ESPSWSPDGRMIVFASNR--- 404
Query: 566 MAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
Q LYV+ DG R L G E P+W
Sbjct: 405 -----------QGVKKLYVMMADGKNQRPLLAIGGEQTQPSW 435
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 66/161 (40%), Gaps = 27/161 (16%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAK-SDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTG 393
P+FSPDG + F N I + S G + R +WSP + +++
Sbjct: 300 PTFSPDGRKMAFVSARSGNPQIFVYDFSSGKSQRLTFSGRYNTQPAWSPIGDKIAFST-- 357
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK--EETGNNAFPSCSPDGKFLV 451
+ + N I D LT+ ++G N PS SPDG+ +V
Sbjct: 358 ------------------WESGGEINIFVINTDGSGLTQLTTQSGENESPSWSPDGRMIV 399
Query: 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
F S R G K L+V+ A +G+ + R L T PSWS
Sbjct: 400 FASNRQGVKKLYVMMA-DGK---NQRPLLAIGGEQTQPSWS 436
>gi|134080129|emb|CAK46110.1| unnamed protein product [Aspergillus niger]
Length = 719
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 87/186 (46%), Gaps = 17/186 (9%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
N+ FPS SPDG +V+R + L +N G QLTDG W D P WSP G+
Sbjct: 543 NSGFPSWSPDGSAIVYRKWSLATEAPLGLHILNFT-TGKTHQLTDG-W-DNTPGWSPDGE 599
Query: 497 LIAFSSNRHNPDNVEA------FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS 550
I F+ N + ++ A F +Y I+PDGS L R+ S D + + F
Sbjct: 600 RIVFTRNNNWTESYGARWYADRFDIYTIRPDGSELTRV-----TDSLSNDAQYVYPSLFL 654
Query: 551 --ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWH 608
DG +++++ E + + FQPYG + V+ DG+ +T +E+ P +
Sbjct: 655 DFTDGR-IMWSSGQYGFKDESALFDDTFQPYGQIMVMNYDGTNKTLVTDTIWEDSMPLYM 713
Query: 609 PGNQLD 614
P L+
Sbjct: 714 PNEYLE 719
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 40/192 (20%)
Query: 358 IAKSDGSKRWTLIKDRTAFYN---SWSPTEKHVIYTST--GPIFQSERATVQIARVSFQL 412
I+ SDG+ L+ +++ ++ +WS + +++TS GP QS+ V++ +
Sbjct: 108 ISNSDGTNATQLLGNQSNAFDYHPTWSSDGEWIVFTSERRGP-GQSDLYRVRVDGSGLET 166
Query: 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHK-NLFVLDAVNGE 471
+ D+ D+ +L SP+GK L + S + + N++V D +G+
Sbjct: 167 LAATDSVE-----DIGVL-------------SPNGKTLAYVSTQGNYTTNIWVKDLASGQ 208
Query: 472 ---FNGDIRQLTDGPWIDT--MPSWSPKGDLIAFSSNRHNP----------DNVEAFSLY 516
D W PSWSP G+ I FSS+R+ ++ + +Y
Sbjct: 209 AQNLTDTASNRADNTWPTGHFRPSWSPDGEWIVFSSDRNTDWTGHSDGTGWEHTQTLGVY 268
Query: 517 VIKPDGSGLRRI 528
++PDGS R +
Sbjct: 269 AVRPDGSDFRTV 280
>gi|209517620|ref|ZP_03266458.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia sp.
H160]
gi|209501916|gb|EEA01934.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia sp.
H160]
Length = 430
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 102/263 (38%), Gaps = 69/263 (26%)
Query: 379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN 438
+WSP V Y S F+ ++ V I ++P +++ ++ GNN
Sbjct: 202 AWSPDGTKVAYVS----FEKKKPIVYI---------------HDLPTGRRVVVSDQKGNN 242
Query: 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
+ P+ SPDG+ L R+G+ +F AVN + +G +R+LT G IDT P++SP G I
Sbjct: 243 SAPAWSPDGRTLAVALSRTGNTQIF---AVNADGSG-LRRLTQGSSIDTEPTYSPDGQWI 298
Query: 499 AFSSNRHNPDNVEAFSLY--------------------VIKPDGSGLRRIH--------- 529
F+S+R + + PDG L I
Sbjct: 299 YFTSDRGGAPQIYKMPAQGESAGSAQRVTFTGSYNTSPRVSPDGKELAYISRVGGAFKLY 358
Query: 530 ---VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVK 586
+ G +G D F+A+G+++L+ Q G L V
Sbjct: 359 LQDLQGGSATGLTDTAHDESPSFAANGQYILYA--------------TQVNGRGVLAAVS 404
Query: 587 LDGSGLRRLTWNGYENGTPAWHP 609
DG + L+ G P+W P
Sbjct: 405 TDGRTRQVLSVQGGNVREPSWGP 427
>gi|220924307|ref|YP_002499609.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Methylobacterium nodulans ORS 2060]
gi|219948914|gb|ACL59306.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium
nodulans ORS 2060]
Length = 442
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 118/292 (40%), Gaps = 67/292 (22%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ I DG+ R+ + +SP + + Y S ++ VQ+ +
Sbjct: 188 LAIMDQDGANVRYLTSGEAAVVAPRYSPATQDITYMSQ---ITGQQPRVQVINL------ 238
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ R+ IP ++ T P SPDG+ LV G+ +++V+D +
Sbjct: 239 -ETGARQVIPTKAEMSTS--------PRFSPDGRRLVMSDQDGGNASIYVMDLASKAQT- 288
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
++T+ IDT PS+SP G I F S+R + YV+ DGS RRI E
Sbjct: 289 ---RVTNANAIDTSPSFSPDGREIVFESDRGGQQQI-----YVMGADGSNPRRISFG--E 338
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR 594
GS + +S G+++ FT A + ++K DGSG R
Sbjct: 339 GSA-------SQPAWSPRGDYIAFTRQRKGSFA--------------ICIMKPDGSGERV 377
Query: 595 LTWNGYENGTPAWHPGNQLDL----------GKLRLEDDIGDKLRGQFDEPL 636
LT G+ N P W P Q L GKL + D + G+ ++P+
Sbjct: 378 LT-EGFHNEGPTWAPNGQYVLFFRDPGGQAGGKLYMVD-----ITGRVEQPV 423
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 83/173 (47%), Gaps = 40/173 (23%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG+ +VF S R G + ++V+ G + R+++ G + P+WSP+GD IAF
Sbjct: 300 PSFSPDGREIVFESDRGGQQQIYVM----GADGSNPRRISFGEGSASQPAWSPRGDYIAF 355
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGPEGSGDVDRERINHVCFSADGEWL 556
+ R +F++ ++KPDGSG R + H GP ++ +G+++
Sbjct: 356 TRQRKG-----SFAICIMKPDGSGERVLTEGFHNEGP--------------TWAPNGQYV 396
Query: 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
LF + G Q G LY+V + G + + Y + P+W P
Sbjct: 397 LFFRDPGG------------QAGGKLYMVDITGRVEQPVPTPSYAS-DPSWSP 436
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 30/163 (18%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTG 393
PSFSPDG IVF D I + +DGS R + +A +WSP ++ +T
Sbjct: 300 PSFSPDGREIVFESDRGGQQQIYVMGADGSNPRRISFGEGSASQPAWSPRGDYIAFT--- 356
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF- 452
+ + + I + P R +LT E +N P+ +P+G++++F
Sbjct: 357 ---RQRKGSFAIC----IMKPDGSGER--------VLT--EGFHNEGPTWAPNGQYVLFF 399
Query: 453 --RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
G++G K L+++D G + Q P + PSWSP
Sbjct: 400 RDPGGQAGGK-LYMVD-----ITGRVEQPVPTPSYASDPSWSP 436
>gi|453052656|gb|EMF00134.1| hypothetical protein H340_12652 [Streptomyces mobaraensis NBRC
13819 = DSM 40847]
Length = 344
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 114/265 (43%), Gaps = 68/265 (25%)
Query: 329 RLNGSFPSFSPDGGLIVFN--HDFELNAGIKIAKS---DGSKRW----TLI--KDRTAFY 377
R + P+FSPDG ++F HD NAG ++ G++R TL+ DR A
Sbjct: 59 RASAQNPAFSPDGSSLLFTVFHDG-YNAGAAALRTLPLGGARRQAAPRTLLDESDRAAVN 117
Query: 378 ---NSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEI----PCDVKIL 430
SW+P S G F S+RA R+E+ P
Sbjct: 118 LPGTSWNP--------SAGVTFASDRA-----------------GRDEVWVLRPGGRPER 152
Query: 431 TKEETGNNAF--PSCSPDGKFLVF-----RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP 483
E G+ + PS SPDG+++VF R G SG L V + G R L DGP
Sbjct: 153 VTEHDGDTGYLEPSFSPDGRWIVFQESTEREGGSGGDG--SLWKVRRDGTGRTR-LVDGP 209
Query: 484 WIDT---MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVD 540
T P+WSP GD + F R D + LYV+ DG GLR + V G D
Sbjct: 210 GTHTDNRQPNWSPAGDRLVFQRRRQGSDE---WRLYVMDADGGGLRELPVQG-------D 259
Query: 541 RERINHVCFSADGEWLLFTANLGAV 565
E + +S DG+W++F++ G +
Sbjct: 260 GEHTD-PSWSPDGKWVVFSSTAGGL 283
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 77/191 (40%), Gaps = 31/191 (16%)
Query: 335 PSFSPDGGLIVFNHDFELNAG------IKIAKSDGSKRWTLIKDRTAFYNS----WSPTE 384
PSFSPDG IVF E G + + DG+ R L+ ++ WSP
Sbjct: 165 PSFSPDGRWIVFQESTEREGGSGGDGSLWKVRRDGTGRTRLVDGPGTHTDNRQPNWSPAG 224
Query: 385 KHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCS 444
++ FQ R R+ + +D +D E+P + G + PS S
Sbjct: 225 DRLV-------FQRRRQGSDEWRL-YVMD-ADGGGLRELPV-------QGDGEHTDPSWS 268
Query: 445 PDGKFLVFRSGRSGHK--NLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
PDGK++VF S G + +F + G +R D PSWSP G IAF S
Sbjct: 269 PDGKWVVFSSTAGGLELPQIFAVPVTGGR---PVRVTRHDSSYDGAPSWSPDGKWIAFES 325
Query: 503 NRHNPDNVEAF 513
+ D A
Sbjct: 326 HPGGEDRPSAL 336
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 18/131 (13%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKN--LFVLDAVNGEFNGDIRQL-TDGPWIDTMPSWSP 493
+N P+ SP G LVF+ R G L+V+DA G +R+L G T PSWSP
Sbjct: 214 DNRQPNWSPAGDRLVFQRRRQGSDEWRLYVMDADGG----GLRELPVQGDGEHTDPSWSP 269
Query: 494 KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADG 553
G + FSS + + F++ V +G R + V + S D +S DG
Sbjct: 270 DGKWVVFSSTAGGLELPQIFAVPV-----TGGRPVRVTRHDSSYD------GAPSWSPDG 318
Query: 554 EWLLFTANLGA 564
+W+ F ++ G
Sbjct: 319 KWIAFESHPGG 329
>gi|404498380|ref|YP_006722486.1| biopolymer transport TolB-like protein [Geobacter metallireducens
GS-15]
gi|418067067|ref|ZP_12704419.1| Tol-Pal system beta propeller repeat protein TolB [Geobacter
metallireducens RCH3]
gi|119371044|sp|Q39PS9.1|TOLB_GEOMG RecName: Full=Protein TolB; Flags: Precursor
gi|78195978|gb|ABB33745.1| biopolymer transport periplasmic beta-propeller repeat protein,
TolB-related protein [Geobacter metallireducens GS-15]
gi|373559428|gb|EHP85725.1| Tol-Pal system beta propeller repeat protein TolB [Geobacter
metallireducens RCH3]
Length = 429
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 119/304 (39%), Gaps = 74/304 (24%)
Query: 339 PDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTS----TG 393
P G I F I + DG L K+R+ N +SP+ K +I+TS
Sbjct: 165 PFTGKIAFVSTRAGAKAIFLMDYDGHNVQQLTKNRSINLNPDFSPSGKEIIFTSYRQGNP 224
Query: 394 PIFQSERATVQIARVS-----------------FQLDPSDDNNREEIPCDVKILTKEETG 436
+F+ E T AR+S L S D N E I T G
Sbjct: 225 DLFRRELFTGAEARISSYRGINATGAWSPDGKTIALTLSKDGNSE-------IYTISRDG 277
Query: 437 NN-----------AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWI 485
N P+ SPD + +VF S R G +F+++A +G +R+LT
Sbjct: 278 KNPHRLTNTSAIEVSPAWSPDVRKIVFVSDRLGKPQIFIMNA-DGT---GVRRLTTSGNY 333
Query: 486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERIN 545
+ P WSPKGD I +S F +Y I PDG+ R+ EGS +
Sbjct: 334 NVSPRWSPKGDRIVYSRQEG------GFQIYAINPDGTNDTRLT---SEGSNE------- 377
Query: 546 HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTP 605
H +S DG ++ F++ G +YV++ DGSG R++ + P
Sbjct: 378 HPRWSPDGRFITFSSTRGGGEG--------------IYVMRADGSGQTRVSGGKGRDSHP 423
Query: 606 AWHP 609
W P
Sbjct: 424 TWSP 427
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 30/163 (18%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN---SWSPTEKHVIYTS 391
P++SPD IVF D I I +DG+ L + YN WSP ++Y+
Sbjct: 293 PAWSPDVRKIVFVSDRLGKPQIFIMNADGTGVRRLTT--SGNYNVSPRWSPKGDRIVYSR 350
Query: 392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451
FQ + ++P N+ LT E G+N P SPDG+F+
Sbjct: 351 QEGGFQI-----------YAINPDGTNDTR--------LTSE--GSNEHPRWSPDGRFIT 389
Query: 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
F S R G + ++V+ A + +G R ++ G D+ P+WSP+
Sbjct: 390 FSSTRGGGEGIYVMRA---DGSGQTR-VSGGKGRDSHPTWSPR 428
>gi|116748201|ref|YP_844888.1| TolB domain-containing protein [Syntrophobacter fumaroxidans MPOB]
gi|116697265|gb|ABK16453.1| TolB, N-terminal domain protein [Syntrophobacter fumaroxidans MPOB]
Length = 457
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 87/187 (46%), Gaps = 40/187 (21%)
Query: 428 KILTKEETGN--NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWI 485
+IL K G N P SPDG+ L F S SG+ ++ +D +G+ R+LT
Sbjct: 301 QILQKLVQGRSINVSPDWSPDGRSLAFVSDESGNPQIYAIDVGSGQ----KRRLTFSGTY 356
Query: 486 DTMPSWSPKGDLIAFSSN---RHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRE 542
+T PSWSPKGD IA+S RH+ ++++K DGSG R++ +G GD
Sbjct: 357 NTSPSWSPKGDFIAYSGTVGGRHH--------IFIMKTDGSGNRQLT----DGDGD---- 400
Query: 543 RINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+S DG + F++ Q ++V ++G G+RRLT G
Sbjct: 401 -DVSPTWSPDGRMIAFSSTR--------------QGGSAIWVSSVNGIGVRRLTRQGGGQ 445
Query: 603 GTPAWHP 609
P W P
Sbjct: 446 ELPDWSP 452
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 109/272 (40%), Gaps = 53/272 (19%)
Query: 344 IVFNHDFELNAGIKIAKSDGSKRWTLIKDRT-AFYNSWSPTEKHVIYTSTGPIFQSERAT 402
I + N I I+ DGS +D + + +W+P + Y S ++ A
Sbjct: 192 IAYVQSMGKNKEIFISDFDGSNPVQASRDNSLSLSPAWNPQMSQIAYVS----YRDGNAK 247
Query: 403 VQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNL 462
+ + L+ D ++R L G N P+ P L R G+ ++
Sbjct: 248 I------YLLNLQDGSSR---------LLCGYPGMNISPAWRPGRPELAVTLTRDGNPDI 292
Query: 463 FVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH-NPDNVEAFSLYVIKPD 521
F++ A +G+ +++L G I+ P WSP G +AF S+ NP +Y I
Sbjct: 293 FLVSASSGQI---LQKLVQGRSINVSPDWSPDGRSLAFVSDESGNP------QIYAIDVG 343
Query: 522 GSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGD 581
RR+ +G + +S G+++ ++ +G
Sbjct: 344 SGQKRRLTFSGTYNT---------SPSWSPKGDFIAYSGTVGGRH--------------H 380
Query: 582 LYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
++++K DGSG R+LT ++ +P W P ++
Sbjct: 381 IFIMKTDGSGNRQLTDGDGDDVSPTWSPDGRM 412
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 63/161 (39%), Gaps = 24/161 (14%)
Query: 335 PSFSPDGGLIVFNHDFELNAGI-KIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTG 393
P +SPDG + F D N I I G KR SWSP + Y+
Sbjct: 316 PDWSPDGRSLAFVSDESGNPQIYAIDVGSGQKRRLTFSGTYNTSPSWSPKGDFIAYS--- 372
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453
TV F + NR+ D G++ P+ SPDG+ + F
Sbjct: 373 -------GTVGGRHHIFIMKTDGSGNRQLTDGD---------GDDVSPTWSPDGRMIAFS 416
Query: 454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
S R G ++V +VNG +R+LT +P WSP+
Sbjct: 417 STRQGGSAIWV-SSVNGI---GVRRLTRQGGGQELPDWSPR 453
>gi|78186497|ref|YP_374540.1| TolB protein [Chlorobium luteolum DSM 273]
gi|78166399|gb|ABB23497.1| TolB protein, putative [Chlorobium luteolum DSM 273]
Length = 449
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 78/167 (46%), Gaps = 31/167 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG + F S R G+ +F+LD G+ R+LT +T PSWSP GD IA+
Sbjct: 310 PSFSPDGTKMAFVSARFGNPQVFILDLGTGQ----TRRLTYNGNYNTQPSWSPGGDKIAY 365
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
++ N + +++ I+PDGSG R+ SG + E +S G+ ++FT+
Sbjct: 366 TTMEKNGE----INIFTIRPDGSGATRLT------SGARENE---SPSWSPGGDMIVFTS 412
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
Q LYV+ +G RRL E P+W
Sbjct: 413 GR--------------QGQKKLYVMNANGDNQRRLLQMEGEQMQPSW 445
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 82/195 (42%), Gaps = 33/195 (16%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L F SG L +++ + + +RQ G ID P W G++
Sbjct: 224 PALSPDGTRLAFTDYTSGRPGLKIMNMADRRISA-VRQ--SGVSID--PGWRSNGEVATT 278
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSAD-GEWLLF 558
S + D +Y+++PDG+ R++ + G + S + SA G +F
Sbjct: 279 LSFEGDQD------IYLVRPDGTLSRKVTSSRGIDLSPSFSPDGTKMAFVSARFGNPQVF 332
Query: 559 TANLGAVMAEPVSWPNQFQ------PYGD--------------LYVVKLDGSGLRRLTWN 598
+LG +++ + P GD ++ ++ DGSG RLT
Sbjct: 333 ILDLGTGQTRRLTYNGNYNTQPSWSPGGDKIAYTTMEKNGEINIFTIRPDGSGATRLTSG 392
Query: 599 GYENGTPAWHPGNQL 613
EN +P+W PG +
Sbjct: 393 ARENESPSWSPGGDM 407
Score = 45.8 bits (107), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 94/255 (36%), Gaps = 38/255 (14%)
Query: 246 FTPAAFHDGKRLAVATRRKNR-NFRHIEIYDLTLNPNFHH---YNPFVSANSEFIGYHRF 301
TPA DG RLA R + + + D ++ +P +N E F
Sbjct: 222 LTPALSPDGTRLAFTDYTSGRPGLKIMNMADRRISAVRQSGVSIDPGWRSNGEVATTLSF 281
Query: 302 RGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAK- 360
EG I + P + +++ R PSFSPDG + F N + I
Sbjct: 282 -----EGDQDIYLVRPDGTLSRKVTSSRGIDLSPSFSPDGTKMAFVSARFGNPQVFILDL 336
Query: 361 SDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR 420
G R SWSP + YT+ ++ + + N
Sbjct: 337 GTGQTRRLTYNGNYNTQPSWSPGGDKIAYTT--------------------MEKNGEINI 376
Query: 421 EEIPCDVKILTKEETG--NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGD-IR 477
I D T+ +G N PS SP G +VF SGR G K L+V++A NGD R
Sbjct: 377 FTIRPDGSGATRLTSGARENESPSWSPGGDMIVFTSGRQGQKKLYVMNA-----NGDNQR 431
Query: 478 QLTDGPWIDTMPSWS 492
+L PSWS
Sbjct: 432 RLLQMEGEQMQPSWS 446
>gi|390571179|ref|ZP_10251434.1| translocation protein TolB [Burkholderia terrae BS001]
gi|420247845|ref|ZP_14751231.1| tol-pal system beta propeller repeat protein TolB [Burkholderia sp.
BT03]
gi|389936863|gb|EIM98736.1| translocation protein TolB [Burkholderia terrae BS001]
gi|398069989|gb|EJL61310.1| tol-pal system beta propeller repeat protein TolB [Burkholderia sp.
BT03]
Length = 430
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 97/213 (45%), Gaps = 32/213 (15%)
Query: 300 RFRGESTEGQSTIPHLEPVASPVKELRMLRLNGS---FPSFSPDGGLIVFNHDFELNAG- 355
RF+ T Q ++ LE V SP LRM + + G+ + + G
Sbjct: 116 RFKLYDTVNQQSLGGLELV-SPESGLRMSAHKVADYIYAKLMGGRGVFATRLSYVIKTGN 174
Query: 356 ---IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411
++I+ SDG + + +WSP V Y S F+ ++ V I
Sbjct: 175 RYQLQISDSDGQDAHIALSSPEPIISPAWSPDGTKVAYVS----FEKKKPIVYI------ 224
Query: 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471
++P +++ ++ GNN+ P+ SPDG+ L R+G+ +F AVN +
Sbjct: 225 ---------HDLPTGRRVVVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIF---AVNAD 272
Query: 472 FNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
+G +R+LT G IDT PS+SP G I F+S+R
Sbjct: 273 GSG-LRRLTQGSAIDTEPSYSPDGQSIYFTSDR 304
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 36/177 (20%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG + + S +++ D G ++D ++ P+WSP G +A
Sbjct: 201 PAWSPDGTKVAYVSFEKKKPIVYIHDLPTGRR----VVVSDQKGNNSAPAWSPDGRTLAV 256
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ +R N + F+ + DGSGLRR+ +GS +D E +S DG+ + FT+
Sbjct: 257 ALSRTG--NTQIFA---VNADGSGLRRL----TQGSA-IDTEP----SYSPDGQSIYFTS 302
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDG---SGLRRLTWNGYENGTPAWHP-GNQL 613
+ G QP +Y + G G +R+T+ G N +P P G QL
Sbjct: 303 DRGG------------QP--QIYKMPAGGESAGGAQRVTFTGNYNTSPRVSPDGKQL 345
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 67/169 (39%), Gaps = 30/169 (17%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG+ + F S R G ++ + A GE G +++T +T P SP G +A+
Sbjct: 289 PSYSPDGQSIYFTSDRGGQPQIYKMPA-GGESAGGAQRVTFTGNYNTSPRVSPDGKQLAY 347
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S F LY I+ SG+ + D F+A+G+++L+
Sbjct: 348 ISRTGG-----GFKLY-IQDLQSGV---------ATALTDTTHDESPSFAANGQYILYA- 391
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
Q G L V DG + L+ G P+W P
Sbjct: 392 -------------TQVNGRGVLAAVSTDGRTRQVLSVQGGIVREPSWGP 427
>gi|118574590|sp|Q3B584.2|TOLB_PELLD RecName: Full=Protein TolB; Flags: Precursor
Length = 436
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 78/167 (46%), Gaps = 31/167 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG + F S R G+ +F+LD G+ R+LT +T PSWSP GD IA+
Sbjct: 297 PSFSPDGTKMAFVSARFGNPQVFILDLGTGQ----TRRLTYNGNYNTQPSWSPGGDKIAY 352
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
++ N + +++ I+PDGSG R+ SG + E +S G+ ++FT+
Sbjct: 353 TTMEKNGE----INIFTIRPDGSGATRLT------SGARENE---SPSWSPGGDMIVFTS 399
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
Q LYV+ +G RRL E P+W
Sbjct: 400 GR--------------QGQKKLYVMNANGDNQRRLLQMEGEQMQPSW 432
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 82/195 (42%), Gaps = 33/195 (16%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L F SG L +++ + + +RQ G ID P W G++
Sbjct: 211 PALSPDGTRLAFTDYTSGRPGLKIMNMADRRISA-VRQ--SGVSID--PGWRSNGEVATT 265
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSAD-GEWLLF 558
S + D +Y+++PDG+ R++ + G + S + SA G +F
Sbjct: 266 LSFEGDQD------IYLVRPDGTLSRKVTSSRGIDLSPSFSPDGTKMAFVSARFGNPQVF 319
Query: 559 TANLGAVMAEPVSWPNQF------QPYGD--------------LYVVKLDGSGLRRLTWN 598
+LG +++ + P GD ++ ++ DGSG RLT
Sbjct: 320 ILDLGTGQTRRLTYNGNYNTQPSWSPGGDKIAYTTMEKNGEINIFTIRPDGSGATRLTSG 379
Query: 599 GYENGTPAWHPGNQL 613
EN +P+W PG +
Sbjct: 380 ARENESPSWSPGGDM 394
Score = 45.8 bits (107), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 94/255 (36%), Gaps = 38/255 (14%)
Query: 246 FTPAAFHDGKRLAVATRRKNR-NFRHIEIYDLTLNPNFHH---YNPFVSANSEFIGYHRF 301
TPA DG RLA R + + + D ++ +P +N E F
Sbjct: 209 LTPALSPDGTRLAFTDYTSGRPGLKIMNMADRRISAVRQSGVSIDPGWRSNGEVATTLSF 268
Query: 302 RGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAK- 360
EG I + P + +++ R PSFSPDG + F N + I
Sbjct: 269 -----EGDQDIYLVRPDGTLSRKVTSSRGIDLSPSFSPDGTKMAFVSARFGNPQVFILDL 323
Query: 361 SDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR 420
G R SWSP + YT+ ++ + + N
Sbjct: 324 GTGQTRRLTYNGNYNTQPSWSPGGDKIAYTT--------------------MEKNGEINI 363
Query: 421 EEIPCDVKILTKEETG--NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGD-IR 477
I D T+ +G N PS SP G +VF SGR G K L+V++A NGD R
Sbjct: 364 FTIRPDGSGATRLTSGARENESPSWSPGGDMIVFTSGRQGQKKLYVMNA-----NGDNQR 418
Query: 478 QLTDGPWIDTMPSWS 492
+L PSWS
Sbjct: 419 RLLQMEGEQMQPSWS 433
>gi|197119875|ref|YP_002140302.1| TolB-like biopolymer transport periplasmic beta-propeller repeat
protein [Geobacter bemidjiensis Bem]
gi|197089235|gb|ACH40506.1| biopolymer transport periplasmic beta-propeller repeat protein,
TolB-related protein [Geobacter bemidjiensis Bem]
Length = 407
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 121/297 (40%), Gaps = 69/297 (23%)
Query: 342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGP----IF 396
G I + N I + DG L + + N ++P+ K +IYTS ++
Sbjct: 145 GKIAYVTKASGNKEIFVMDYDGHNPQRLTNNGSINLNPDFAPSGKEIIYTSYKKGNPDLY 204
Query: 397 QSERATVQIARVS-----------------FQLDPSDDNNREEIPCDVKILTKEE----- 434
+ E T AR+S + S D N E + ++++E
Sbjct: 205 RRELFTGLEARISSRSGLNATGAYSPDGSKIAMVMSKDGNSE-----IYLISREGKELAR 259
Query: 435 -TGNNAF---PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS 490
T N+A P+ SPDG +VF S R G +F+++A G++ +LT + P
Sbjct: 260 LTNNHAIDVSPAWSPDGSRIVFVSDRLGKPQVFIMNA----DGGNVHRLTANGAYNVTPR 315
Query: 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS 550
WSPKGD I ++ F +Y I DG+ ++ AG H FS
Sbjct: 316 WSPKGDRIVYARQGGG-----GFQIYAINADGTQDTQLTSAGSN----------EHPRFS 360
Query: 551 ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
DG +++F++ A +Y+++ DGSG R++ N +N P W
Sbjct: 361 PDGRFIVFSSTRDGAEA--------------IYLMRADGSGQTRVSPNKSQNSHPTW 403
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 56/194 (28%)
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNG-DIRQLTDGPWIDTMPSWSPKGDLIAFSS-NRHNP 507
+ + + SG+K +FV+D ++G + ++LT+ I+ P ++P G I ++S + NP
Sbjct: 147 IAYVTKASGNKEIFVMD-----YDGHNPQRLTNNGSINLNPDFAPSGKEIIYTSYKKGNP 201
Query: 508 D------------------NVEAFSLYVIKPDGS---------GLRRIHVAGPEGSGDVD 540
D + A Y PDGS G I++ EG ++
Sbjct: 202 DLYRRELFTGLEARISSRSGLNATGAY--SPDGSKIAMVMSKDGNSEIYLISREGK-ELA 258
Query: 541 RERINHV-----CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL 595
R NH +S DG ++F ++ + +P ++++ DG + RL
Sbjct: 259 RLTNNHAIDVSPAWSPDGSRIVFVSDR---LGKP-----------QVFIMNADGGNVHRL 304
Query: 596 TWNGYENGTPAWHP 609
T NG N TP W P
Sbjct: 305 TANGAYNVTPRWSP 318
>gi|255020130|ref|ZP_05292200.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins
[Acidithiobacillus caldus ATCC 51756]
gi|340783543|ref|YP_004750150.1| tolB protein [Acidithiobacillus caldus SM-1]
gi|254970423|gb|EET27915.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins
[Acidithiobacillus caldus ATCC 51756]
gi|340557694|gb|AEK59448.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins
[Acidithiobacillus caldus SM-1]
Length = 424
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 112/296 (37%), Gaps = 95/296 (32%)
Query: 356 IKIAKSDGSKRWTLIKDRT-AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A+SDG +++ R F WSP + + Y + + RA + + ++
Sbjct: 178 LLVAESDGWNPHPVVRGRMPVFSPVWSPDNRRLAYVT----YHDARAIIYVQDLA----- 228
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
R+ + +I++ P+ SPDG+ L + G N+FV+D G+
Sbjct: 229 --TGQRQAVAPAGEIVSA--------PAFSPDGRELAYARAEGGATNIFVVDLATGQR-- 276
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR------------------------------ 504
RQLT G I+T PSW+P G + F S+R
Sbjct: 277 --RQLTHGSAINTSPSWAPDGRHLVFVSDRAGSPQIYSMDSDGGDVHRLTFSGNYNASPV 334
Query: 505 -----------HNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADG 553
H D V ++L V++ DGSG+R + G +H F+ +G
Sbjct: 335 YSPTGQDIAFIHRTDGV--YALAVMRADGSGMRVLDAQG----------NCDHPSFAGNG 382
Query: 554 EWLLFTANLGA--VMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
+ +L+ G V+AE +DG L L E+ PAW
Sbjct: 383 QMILYGTQRGGRKVLAE----------------ASVDGKTLAVLRGTAGEDSQPAW 422
>gi|350635334|gb|EHA23695.1| hypothetical protein ASPNIDRAFT_180130 [Aspergillus niger ATCC
1015]
Length = 681
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 135/309 (43%), Gaps = 52/309 (16%)
Query: 312 IPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK 371
+ H E +A K+L N S + + GG + +D + ++ G
Sbjct: 410 VSHQERIAITQKQLG----NSSIVTLNTTGGDLQLVYDPSTADFVSDDETTG-------- 457
Query: 372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQ-IARVSFQLDPSDDNNREEIPCDVKIL 430
+A+ SWSP + +++ G F++ A+ I R + ++ + E + +
Sbjct: 458 -LSAYQPSWSPCGEWLVF-GVGFWFETREASGGWIVRAT-----ANGSYAEVLVNSSYSI 510
Query: 431 TKEETGNNAFPSCSPDGKFLVFRS--------GRSGHKNLFVLDAVNGEFNGDIRQLT-- 480
T++ NN FPS SPDGK +V+R G + L VLD + R+ T
Sbjct: 511 TEDGALNNGFPSFSPDGKKVVYRVWGADTASYGNASEIGLRVLDL-------ETRKTTVL 563
Query: 481 DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVD 540
W D +P +SP G+LI F+ + + + I+PDG+ LR + +G +
Sbjct: 564 TTEW-DNLPQFSPDGELILFTRKTSTYN----YDVCTIRPDGTDLRVLTSSGANDA---- 614
Query: 541 RERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGY 600
H +S DG ++++ + E + + FQPYG + ++ DG + +T + +
Sbjct: 615 -----HAVWSQDGR-IMWSTGMYGFRFECALYDDTFQPYGQIMIMDADGGNKKLMTNSMW 668
Query: 601 ENGTPAWHP 609
E+ P + P
Sbjct: 669 EDSMPLFLP 677
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 31/111 (27%)
Query: 444 SPDGKFLVFRSGRSGHK-NLFVLDAVNG-EFNGDIRQLTDGPWIDT---------MPSWS 492
SP+G+ + S + K N+++LD G ++N LT+ P P+WS
Sbjct: 153 SPNGRLAAYVSTANNMKANIWILDLQTGAQWN-----LTNTPTTAANSSLMESYLRPAWS 207
Query: 493 PKGDLIAFSSNRHNP---------------DNVEAFSLYVIKPDGSGLRRI 528
P G+ IAFSS+R+ + + SLY I+P+GS R+I
Sbjct: 208 PDGEWIAFSSDRNTQWDGHGVPTFLGRTGWETTQELSLYAIRPNGSDFRQI 258
>gi|392382488|ref|YP_005031685.1| periplasmic protein of the Tol-Pal system [Azospirillum brasilense
Sp245]
gi|356877453|emb|CCC98287.1| periplasmic protein of the Tol-Pal system [Azospirillum brasilense
Sp245]
Length = 450
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 86/197 (43%), Gaps = 40/197 (20%)
Query: 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI 476
D+ R+E+ D G P SPDG +V ++G+ +++ LD
Sbjct: 246 DSGRQEVLGDF-------VGMTFAPRFSPDGNKVVMSMAQNGNTDIYALDLRTRRQT--- 295
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS 536
QLTD P IDT PS+SP G I F S+R LY++ DGSG +R+ EG
Sbjct: 296 -QLTDSPGIDTGPSYSPDGQRIVFESDRGGSQQ-----LYIMNADGSGQKRLTFG--EG- 346
Query: 537 GDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596
R +S G+ + FT G+ A L V++ DG+G R LT
Sbjct: 347 ------RYGTPVWSPRGDLIAFTRQRGSSFA--------------LGVIRPDGTGERILT 386
Query: 597 WNGYENGTPAWHPGNQL 613
+ + G P W P ++
Sbjct: 387 ESFHVEG-PTWAPNGRV 402
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 70/174 (40%), Gaps = 20/174 (11%)
Query: 39 LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA 98
LTDG ++ +F Q I ++S + PR+Y S + E+L F R
Sbjct: 209 LTDGKNLVLTPRFSPAT-QEITYMSYFNKKPRVYLFNIDSGRQEVLGDFVGMTFAPRFSP 267
Query: 99 RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVAS 158
NK+ A I Y+ DL+ + T+LT +D PS S G+ I S
Sbjct: 268 DGNKVVMSMAQNGNTDI-------YALDLRTRRQTQLTDSPGIDTGPSYSPDGQRIVFES 320
Query: 159 YESRPWPGEFHELNTDIVVFQESDPNKRVIVCE-RGGWPTWS--GDSTIYFHRQ 209
R + + +N D KR+ E R G P WS GD I F RQ
Sbjct: 321 --DRGGSQQLYIMNAD------GSGQKRLTFGEGRYGTPVWSPRGD-LIAFTRQ 365
>gi|186477204|ref|YP_001858674.1| translocation protein TolB [Burkholderia phymatum STM815]
gi|226705871|sp|B2JGA0.1|TOLB_BURP8 RecName: Full=Protein TolB; Flags: Precursor
gi|184193663|gb|ACC71628.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
phymatum STM815]
Length = 430
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 85/350 (24%), Positives = 134/350 (38%), Gaps = 78/350 (22%)
Query: 300 RFRGESTEGQSTIPHLEPVASPVKELRMLRLNGS---FPSFSPDGGLIVFNHDFELNAG- 355
RF+ T Q ++ LE V SP LRM + + G+ + + G
Sbjct: 116 RFKLYDTVNQQSLGGLELV-SPEGGLRMSAHKVADYIYAKLMGGRGVFATRLSYVIKTGN 174
Query: 356 ---IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411
++I+ SDG + + +WSP V Y S F+ ++ V I
Sbjct: 175 RYQLQISDSDGQDAHIALSSPEPIISPAWSPDGTKVAYVS----FEKKKPIVYI------ 224
Query: 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471
++P +++ ++ GNN+ P+ SPDG+ L R+G+ +F AVN +
Sbjct: 225 ---------HDLPTGRRVVVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIF---AVNAD 272
Query: 472 FNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHN-------PDNVEAFSLYV------- 517
+G +R+LT G IDT PS+SP G I F+S+R P + EA
Sbjct: 273 GSG-LRRLTQGSSIDTEPSYSPDGQSIYFTSDRGGQPQIYKMPASGEASGGAQRVTFTGN 331
Query: 518 ------IKPDGSGLRRIHVAGPE------------GSGDVDRERINHVCFSADGEWLLFT 559
+ PDG L I G + D F+A+G+++L+
Sbjct: 332 YNTSPRVSPDGKQLAYISRTGGGFKLYIQDLQSGVATALTDTTHDESPSFAANGQYILYA 391
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
Q G L V DG + L+ G P+W P
Sbjct: 392 --------------TQVNGRGVLAAVSTDGRTRQVLSVQGGSVREPSWGP 427
>gi|198282216|ref|YP_002218537.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Acidithiobacillus ferrooxidans ATCC 53993]
gi|218665098|ref|YP_002424581.1| tol-pal system beta propeller repeat protein TolB
[Acidithiobacillus ferrooxidans ATCC 23270]
gi|198246737|gb|ACH82330.1| Tol-Pal system beta propeller repeat protein TolB
[Acidithiobacillus ferrooxidans ATCC 53993]
gi|218517311|gb|ACK77897.1| tol-pal system beta propeller repeat protein TolB
[Acidithiobacillus ferrooxidans ATCC 23270]
Length = 422
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 86/373 (23%), Positives = 137/373 (36%), Gaps = 112/373 (30%)
Query: 281 NFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFS-- 338
N + YN VS E HRF + E T H+ V + +F+
Sbjct: 114 NVYVYN--VSTGQELTA-HRFTCSAAELHMTAHHVADVI--------------YQAFTGK 156
Query: 339 --PDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRT-AFYNSWSPTEKHVIYTSTGPI 395
P I + N + +A+SDG +++ R F WSP + + Y +
Sbjct: 157 PGPFASRIAYVRQTGANYELLVAESDGWNPHPIVRGRMPVFSPVWSPDNRRLAYVT---- 212
Query: 396 FQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSG 455
+ + RA + + ++ R+ I +I++ P+ SP+G L +
Sbjct: 213 YANARAVIYVQDLA-------TGQRQSIAPGGEIVSA--------PAFSPNGTELAYARS 257
Query: 456 RSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA--- 512
GH L+V + G+ RQLT I+T P+WSP G I F S+R + A
Sbjct: 258 SGGHTELYVANLQTGQR----RQLTHDDAINTSPTWSPDGSRIIFVSDRAGGPQIYAMNA 313
Query: 513 ------------------------------------FSLYVIKPDGSGLRRIHVAGPEGS 536
++L V+ PDGSG+R + +
Sbjct: 314 SGGAAHRLSYDGSYNASPVYSPAGNAIAFIHRTNGVYALAVMNPDGSGVRVL-----DAQ 368
Query: 537 GDVDRERINHVCFSADGEWLLFTANLGA--VMAEPVSWPNQFQPYGDLYVVKLDGSGLRR 594
G+ D H F+ +G+ +L+ G V+AE V LDG +
Sbjct: 369 GNCD-----HPSFAGNGQMILYGTQRGGRKVLAE----------------VSLDGKTMAI 407
Query: 595 LTWNGYENGTPAW 607
L N E+ PAW
Sbjct: 408 LHSNAGEDSQPAW 420
>gi|251793058|ref|YP_003007784.1| translocation protein TolB [Aggregatibacter aphrophilus NJ8700]
gi|422336596|ref|ZP_16417569.1| tolB [Aggregatibacter aphrophilus F0387]
gi|247534451|gb|ACS97697.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
aphrophilus NJ8700]
gi|353346782|gb|EHB91067.1| tolB [Aggregatibacter aphrophilus F0387]
Length = 426
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 115/273 (42%), Gaps = 52/273 (19%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++++ DG ++ + + F + +WSP K + Y S F++++A + +
Sbjct: 183 VRVSDYDGFNQFIVNRSSQPFMSPAWSPDGKKLAYVS----FENKKAQIIL--------- 229
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+++ + + G+N P+ SPDG L F S + G N++V++ +G+
Sbjct: 230 ------QDLGSMARKVVASFPGHNGAPAFSPDGSRLAFASSKDGVLNIYVINLGSGQ--- 280
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
+ QLT G +T PSWSP G I F+S+R V Y + G G + G
Sbjct: 281 -VSQLTSGAGNNTEPSWSPDGQSIVFTSDRGGSPQV-----YRMSASGGGA---SLVGGR 331
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS----------WPNQF-------Q 577
GSG + + V DG + +L + AE +S PN Q
Sbjct: 332 GSGQISSDGSTLVMI--DGSNNIVKKDLASGSAEVLSSTFLDESPSISPNGIMIIYSSTQ 389
Query: 578 PYGD-LYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G L +V DG RL N + PAW P
Sbjct: 390 GLGKVLQLVSADGRFKARLPGNDGQVKFPAWSP 422
>gi|347757949|ref|YP_004865511.1| tol-Pal system beta propeller repeat-containing protein TolB
[Micavibrio aeruginosavorus ARL-13]
gi|347590467|gb|AEP09509.1| tol-Pal system beta propeller repeat protein TolB [Micavibrio
aeruginosavorus ARL-13]
Length = 443
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 108/247 (43%), Gaps = 29/247 (11%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA 354
Y R GE + I ++ P VK L ++ +G + DG +V F N
Sbjct: 160 YKRLTGEDAYFDTRIVYVAESGPANKRVKRLAIMDQDGYNNHYLTDGSYMVLTPRFSPNT 219
Query: 355 GIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +K K R YN + V+ G F S R + ++V L
Sbjct: 220 QTVAYLAYYNK-----KPRVYIYN-IDTGRQEVLGDFPGMTF-SPRFSPDGSKVIMSL-- 270
Query: 415 SDDNNREEIPCDVKILTKEETGNNAF----PSCSPDGKFLVFRSGRSGHKNLFVLDAVNG 470
+++ N E D+K + NNA PS SPDG+ + F S R G + L+V+ A NG
Sbjct: 271 AENGNTEIYTMDLKSRRTQRLTNNAAIDTAPSFSPDGQQVAFESDRGGTQQLYVMSA-NG 329
Query: 471 EFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI-- 528
G+ ++++ G P WSP+GDLIAF+ F + V++PDG G R I
Sbjct: 330 ---GEAKRISFGEGRYASPVWSPRGDLIAFTKLYKG-----QFYIGVMRPDGQGERIITT 381
Query: 529 --HVAGP 533
HV GP
Sbjct: 382 AYHVEGP 388
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 34 FHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFH 93
++ H LTDG+ + +F QT+A+++ + PR+Y + + E+L P F
Sbjct: 198 YNNHYLTDGSYMVLTPRF-SPNTQTVAYLAYYNKKPRVYIYNIDTGRQEVLGDFPGMTFS 256
Query: 94 DRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKF 153
R +K+ A +I Y+ DLK+ + RLT +D +PS S G+
Sbjct: 257 PRFSPDGSKVIMSLAENGNTEI-------YTMDLKSRRTQRLTNNAAIDTAPSFSPDGQQ 309
Query: 154 IAVAS 158
+A S
Sbjct: 310 VAFES 314
>gi|407915899|gb|EKG09397.1| Six-bladed beta-propeller TolB-like protein [Macrophomina
phaseolina MS6]
Length = 538
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 130/307 (42%), Gaps = 53/307 (17%)
Query: 321 PVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK-RWTLIKDRT----- 374
P E R + +FP+ SP G L V+ N+ I DGS + D+T
Sbjct: 262 PAWEYRFID---TFPNLSPQGKL-VYTSKQTSNSSIVTMNPDGSDYKLVFDVDQTNQVDM 317
Query: 375 ---------AFYNSWSPTEKHVIYTSTGPIFQSERAT-VQIARVSFQLDPSDDNNREEIP 424
AF SWS + + + G FQ ++ I RV ++ ++ E++
Sbjct: 318 LGVAQGSAGAFQPSWSYDGEWITF-GLGTWFQGRYSSKAWIYRVR-----ANGSDYEQLT 371
Query: 425 CDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW 484
+ T N+ FPS SPDG +V+R L VLD E + + PW
Sbjct: 372 GN--------TTNSGFPSYSPDGSKIVYRVFLP-EMGLRVLDLATRETTVLTTERDNLPW 422
Query: 485 IDTMPSWSPKGDLIAFSSNRHNPDN--VEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRE 542
SP G+ + F+ N + + + VI+P+GS L + + +
Sbjct: 423 F------SPNGEWVLFTRNVTDAAQGYFSNYEICVIRPNGSDLTVLTFSAANDA------ 470
Query: 543 RINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
H ++ADG ++++ + AE ++ FQPYG++ ++ +DGS LT + +E+
Sbjct: 471 ---HATWTADGR-IMWSTGMWGFQAEAATYDQLFQPYGNIMIMNVDGSNKTMLTNSMWED 526
Query: 603 GTPAWHP 609
P + P
Sbjct: 527 SMPLYIP 533
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 22/107 (20%)
Query: 442 SCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP---------SWS 492
S SPDGKF + S + + L + G R LT+ + +P SWS
Sbjct: 23 SISPDGKFAAYASTAGVYTSNIWLTEIE---TGHTRNLTNQTGVTGIPESPSGFFAPSWS 79
Query: 493 PKGDLIAFSSNRHNP----------DNVEAFSLYVIKPDGSGLRRIH 529
P G I FSS+R+ ++ + S+Y I+PDG+G R ++
Sbjct: 80 PCGQWIVFSSDRNTNWTGHDDGIGWEHTQNLSIYAIRPDGTGFREVY 126
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 38/180 (21%)
Query: 441 PSCSPDGKFLVFR----SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
P+ SPDGKF+V+ + R K L+ D E+ +IDT P+ SP+G
Sbjct: 232 PAWSPDGKFVVYEKTDWTSRPLEKKLYSWDPA-WEYR----------FIDTFPNLSPQGK 280
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV-------CF 549
L+ S N S+ + PDGS + + + + VD + +
Sbjct: 281 LVYTSKQTSNS------SIVTMNPDGSDYKLVFDV--DQTNQVDMLGVAQGSAGAFQPSW 332
Query: 550 SADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
S DGEW+ F LG ++ +Y V+ +GS +LT N +G P++ P
Sbjct: 333 SYDGEWITF--GLGTWFQ------GRYSSKAWIYRVRANGSDYEQLTGNTTNSGFPSYSP 384
>gi|262199569|ref|YP_003270778.1| beta-propeller repeat-containing to-pal system protein TolB
[Haliangium ochraceum DSM 14365]
gi|262082916|gb|ACY18885.1| beta-propeller repeat-containing to-pal system protein TolB
[Haliangium ochraceum DSM 14365]
Length = 362
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 90/197 (45%), Gaps = 42/197 (21%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG + F S R G L++ DA G+ D+R+LT D P WSP G IAF
Sbjct: 175 PSISPDGTQIAFVSSRDGDPELYLSDA-QGQ---DVRRLTHFHLEDWAPQWSPDGRYIAF 230
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINH--------VCFSAD 552
SNR V ++I+PDGSG R V+G +GD +R+ H V D
Sbjct: 231 LSNREKRARV-----FLIRPDGSGTR--AVSGMAATGD-ERDIAWHPEGGSLVFVGRMDD 282
Query: 553 GEWLLFTANLG-AVMAEPVSWPN--------QFQPYG-------------DLYVVKLDGS 590
G+ L+ +G + EPV+ + + P G DLY+++ DGS
Sbjct: 283 GKTRLWKVEIGDDAVGEPVALTDGSSRDDQPAWSPDGKYLVFVSEREGNTDLYLMRADGS 342
Query: 591 GLRRLTWNGYENGTPAW 607
G RLT + P W
Sbjct: 343 GQTRLTEAPGADWLPRW 359
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 87/213 (40%), Gaps = 55/213 (25%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G + PS +PDG +LV S G NL + + R + D PS SP G
Sbjct: 125 GRSRNPSVAPDGSWLVAESDAEGFSNLVRMTPAP---EAEARSIQDAKAGSFEPSISPDG 181
Query: 496 DLIAFSSNRH-NPDNVEAFSLYVIKPDGSGLRRI---HVA--GPEGSGDVDRERINHVCF 549
IAF S+R +P+ LY+ G +RR+ H+ P+ +
Sbjct: 182 TQIAFVSSRDGDPE------LYLSDAQGQDVRRLTHFHLEDWAPQ--------------W 221
Query: 550 SADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR---LTWNGYENGTPA 606
S DG ++ F +N + +++++ DGSG R + G E A
Sbjct: 222 SPDGRYIAFLSNR--------------EKRARVFLIRPDGSGTRAVSGMAATGDERDI-A 266
Query: 607 WHPG-------NQLDLGKLRL-EDDIGDKLRGQ 631
WHP ++D GK RL + +IGD G+
Sbjct: 267 WHPEGGSLVFVGRMDDGKTRLWKVEIGDDAVGE 299
>gi|315634713|ref|ZP_07889997.1| tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
segnis ATCC 33393]
gi|315476661|gb|EFU67409.1| tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
segnis ATCC 33393]
Length = 426
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 115/273 (42%), Gaps = 52/273 (19%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A DG ++ + K F + +WSP K + Y S F++++A + +
Sbjct: 183 VRVADYDGFNQFIINKSSQPFMSPAWSPDGKKLAYVS----FENKKAQIIL--------- 229
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+++ + + G+N P+ SPDG L F S + G N++V++ +G+
Sbjct: 230 ------QDLSSMARKVIASFPGHNGAPAFSPDGSRLAFASSKDGVLNIYVINLGSGQ--- 280
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
+ QLT G +T PSWSP G I F+S+R V Y + G G + G
Sbjct: 281 -VSQLTSGSGNNTEPSWSPDGQSIVFTSDRGGSPQV-----YRMSASGGGA---SLVGGR 331
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS----------WPNQF-------Q 577
GSG + + V DG + +L + +E +S PN Q
Sbjct: 332 GSGQISSDGSTLVMI--DGSNNIVKQDLVSGGSEVLSSTFLDESPSISPNGIMIIYSSTQ 389
Query: 578 PYGD-LYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G L +V DG RL N + PAW P
Sbjct: 390 GLGKVLQLVSTDGRFKARLPGNDGQVKFPAWSP 422
>gi|374291388|ref|YP_005038423.1| periplasmic protein of the Tol-Pal system [Azospirillum lipoferum
4B]
gi|357423327|emb|CBS86177.1| Periplasmic protein of the Tol-Pal system [Azospirillum lipoferum
4B]
Length = 450
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 86/197 (43%), Gaps = 40/197 (20%)
Query: 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI 476
D R+E+ D +T P SPDG ++ ++G+ +++ LD
Sbjct: 246 DTGRQEVLGDFPGMTFA-------PRFSPDGNKVIMSMAQNGNTDIYTLDLRTRRQT--- 295
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS 536
QLTD P IDT PS+SP G I F S+R LYV+ DGSG++R+ EG
Sbjct: 296 -QLTDAPGIDTAPSYSPDGQRIVFESDRGGTQQ-----LYVMGADGSGVKRLTFG--EG- 346
Query: 537 GDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596
R +S G+ + FT G+ A + V++ DG+G R LT
Sbjct: 347 ------RYGTPVWSPRGDLIAFTRQRGSSFA--------------VGVIRPDGTGERILT 386
Query: 597 WNGYENGTPAWHPGNQL 613
+ G P W P ++
Sbjct: 387 EAFHVEG-PTWAPNGRV 402
Score = 42.0 bits (97), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 72/174 (41%), Gaps = 20/174 (11%)
Query: 39 LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA 98
LTDG ++ +F Q I ++S + PR+Y + + E+L P F R
Sbjct: 209 LTDGQTLVLTPRFSP-TSQEITYMSYFNKKPRVYLFNIDTGRQEVLGDFPGMTFAPRFSP 267
Query: 99 RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVAS 158
NK+ A I Y+ DL+ + T+LT +D +PS S G+ I S
Sbjct: 268 DGNKVIMSMAQNGNTDI-------YTLDLRTRRQTQLTDAPGIDTAPSYSPDGQRIVFES 320
Query: 159 YESRPWPGEFHELNTDIVVFQESDPNKRVIVCE-RGGWPTWS--GDSTIYFHRQ 209
G +L V+ + KR+ E R G P WS GD I F RQ
Sbjct: 321 DR-----GGTQQL---YVMGADGSGVKRLTFGEGRYGTPVWSPRGD-LIAFTRQ 365
>gi|108763053|ref|YP_628620.1| beta-propeller repeat-containing to-pal system protein TolB
[Myxococcus xanthus DK 1622]
gi|108466933|gb|ABF92118.1| tol-pal system beta propeller repeat protein TolB [Myxococcus
xanthus DK 1622]
Length = 366
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 129/296 (43%), Gaps = 44/296 (14%)
Query: 253 DGKRLAVATRRKNRNFRHIEIYDLTLN---PNFHHYNPFVSA-NSEFI--GYHRFRGEST 306
DGK L V T + ++ L L+ P + P A N+ + G
Sbjct: 92 DGKSLLVITATEEGGLHRQQMRVLPLDGKSPAVPLHPPRARARNASWAPDGTWLVAESDA 151
Query: 307 EGQSTIPHLEPVASPVKELRMLRL-NGSF-PSFSPDGGLIVFNHDFELNAGIKIAKSDGS 364
EG S + LEP E+R+ ++ G F P+ SPDG + F E + + +A +DGS
Sbjct: 152 EGFSDVVRLEPREG-GPEVRLTQVPQGCFEPAVSPDGKEVAFVCSREGDPEVYVANADGS 210
Query: 365 --KRWTLI--KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR 420
+R T +DRT WSP K ++ S ER R+ F L P
Sbjct: 211 GERRLTFFHHEDRTP---KWSPDGKWLVIVS-----DRERKD----RLYF-LRPDG---- 253
Query: 421 EEIPCDVKILTKEE-TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL 479
D++ ++ E G+ + SPDG+ LV+ S + AV G G L
Sbjct: 254 ----SDLRAVSGESFEGDEREAAWSPDGQRLVYVSRLPDGNARIWMVAVAG---GAPVAL 306
Query: 480 TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPE 534
TDG D MP+WSP G +AF S R +V YV++ DGSG R+ A GP+
Sbjct: 307 TDGKHRDDMPAWSPDGKYLAFVSERQGDTDV-----YVMRADGSGQTRLTTAKGPD 357
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 86/195 (44%), Gaps = 37/195 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDGK + F R G ++V N + +G+ R+LT D P WSP G +
Sbjct: 181 PAVSPDGKEVAFVCSREGDPEVYV---ANADGSGE-RRLTFFHHEDRTPKWSPDGKWLVI 236
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV-------DRERINHVCFSADG 553
S+R D LY ++PDGS LR V+G GD D +R+ +V DG
Sbjct: 237 VSDRERKDR-----LYFLRPDGSDLR--AVSGESFEGDEREAAWSPDGQRLVYVSRLPDG 289
Query: 554 E---WLLFTANLGAVM----------------AEPVSWPNQFQPYGDLYVVKLDGSGLRR 594
W++ A V + +++ ++ Q D+YV++ DGSG R
Sbjct: 290 NARIWMVAVAGGAPVALTDGKHRDDMPAWSPDGKYLAFVSERQGDTDVYVMRADGSGQTR 349
Query: 595 LTWNGYENGTPAWHP 609
LT + P W P
Sbjct: 350 LTTAKGPDWLPRWAP 364
Score = 45.4 bits (106), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 25/162 (15%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDR---TAFYNSWSPTEKHVIYTS 391
P +SPDG +V D E + + DGS + + +WSP + ++Y S
Sbjct: 225 PKWSPDGKWLVIVSDRERKDRLYFLRPDGSDLRAVSGESFEGDEREAAWSPDGQRLVYVS 284
Query: 392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451
P + V +A + +D +R+++ P+ SPDGK+L
Sbjct: 285 RLPDGNARIWMVAVA-GGAPVALTDGKHRDDM-----------------PAWSPDGKYLA 326
Query: 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
F S R G +++V+ A + +G R LT D +P W+P
Sbjct: 327 FVSERQGDTDVYVMRA---DGSGQTR-LTTAKGPDWLPRWAP 364
>gi|154246985|ref|YP_001417943.1| beta-propeller repeat-containing to-pal system protein TolB
[Xanthobacter autotrophicus Py2]
gi|154161070|gb|ABS68286.1| Tol-Pal system beta propeller repeat TolB [Xanthobacter
autotrophicus Py2]
Length = 450
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 77/175 (44%), Gaps = 33/175 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P +PDG+ ++ + G+ N+FV+D + +LTD IDT P +SP G I F
Sbjct: 267 PRFAPDGQRVIMSLQQGGNSNIFVMDLRSRATT----RLTDTAAIDTAPCYSPDGRQICF 322
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGSG RRI R + +S G+W+ +T
Sbjct: 323 ESDRGGTSQI-----YVMNADGSGARRISFG---------NARYSTPVWSPKGDWIAYTR 368
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDL 615
A + V++ DGSG R LT GY N P + P ++ +
Sbjct: 369 QAEGRFA--------------IGVMRTDGSGERVLT-EGYHNEGPTFAPNGRVIM 408
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 36/171 (21%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-PWIDTMPSWSPKGDLIA 499
P SP + + + S +G +F+L+ G+ R++ P + P ++P G +
Sbjct: 223 PRFSPTSQEITYMSYGAGDPKVFLLNIETGQ-----REIVGNFPGMSFSPRFAPDGQRVI 277
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV-CFSADGEWLLF 558
S + N+ +V+ R+ D I+ C+S DG + F
Sbjct: 278 MSLQQGGNSNI-----FVMDLRSRATTRL----------TDTAAIDTAPCYSPDGRQICF 322
Query: 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
++ G +YV+ DGSG RR+++ TP W P
Sbjct: 323 ESDRGGT--------------SQIYVMNADGSGARRISFGNARYSTPVWSP 359
>gi|158422148|ref|YP_001523440.1| twin-arginine translocation pathway signal [Azorhizobium
caulinodans ORS 571]
gi|158329037|dbj|BAF86522.1| twin-arginine translocation pathway signal precursor [Azorhizobium
caulinodans ORS 571]
Length = 450
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 75/173 (43%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N+FV+D + +LTD P IDT P +SP G I F
Sbjct: 267 PRFSPDGQRVIMSLQQGGNANIFVMDLRSKATT----RLTDTPAIDTAPCYSPDGRQICF 322
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGSG RRI R N +S G+ + FT
Sbjct: 323 ESDRGGSSQI-----YVMNADGSGQRRISFGN---------ARYNTPVWSPRGDVIAFTR 368
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
A + V++ DG G R LT GY N P + P ++
Sbjct: 369 QAEGKFA--------------IGVMRPDGQGERVLT-EGYHNEGPTFAPNGRV 406
>gi|328953807|ref|YP_004371141.1| protein tolB [Desulfobacca acetoxidans DSM 11109]
gi|328454131|gb|AEB09960.1| Protein tolB [Desulfobacca acetoxidans DSM 11109]
Length = 427
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 35/188 (18%)
Query: 426 DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWI 485
++K + G + P+ SPDG + F S R G+ ++++ G+ R+LT G
Sbjct: 274 NIKQRLTQSPGIDISPTFSPDGAQVAFVSNRGGNPQIYIVSTGGGQ----PRRLTFGGTY 329
Query: 486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERIN 545
+ P+WSP+GDLIA++S F ++VI P G G R+I RE N
Sbjct: 330 NVSPAWSPRGDLIAYASRTGG-----GFQIFVISPQGGGARQI-----------TREGSN 373
Query: 546 HV-CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGT 604
+S DG ++ ++ G A +Y+V + RLT
Sbjct: 374 ESPTWSPDGSFIACSSTRGGTSA--------------IYLVNVKTGTATRLTTMPGAQTQ 419
Query: 605 PAWHPGNQ 612
PAW PG +
Sbjct: 420 PAWAPGGK 427
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 31/165 (18%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN---SWSPTEKHVIYTS 391
P+FSPDG + F + N I I + G + L T YN +WSP + Y S
Sbjct: 289 PTFSPDGAQVAFVSNRGGNPQIYIVSTGGGQPRRLTFGGT--YNVSPAWSPRGDLIAYAS 346
Query: 392 -TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFL 450
TG FQ F + P R+ +T+E G+N P+ SPDG F+
Sbjct: 347 RTGGGFQ-----------IFVISPQGGGARQ--------ITRE--GSNESPTWSPDGSFI 385
Query: 451 VFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
S R G +++++ G +LT P T P+W+P G
Sbjct: 386 ACSSTRGGTSAIYLVNVKTGTAT----RLTTMPGAQTQPAWAPGG 426
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 79/200 (39%), Gaps = 61/200 (30%)
Query: 445 PDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
P G+ L F SG + + L+V+D G +QLT + PSWSP G + F S R
Sbjct: 164 PQGR-LAFISGGTDVRELYVMD-----IGGTPKQLTRYRTLTLTPSWSPDGQEVFFCSYR 217
Query: 505 HN-PDNVEAFSLYVIKPDGSGLRRIH---------VAGPEG--------SGD-----VDR 541
P +LY + P +R++ GP G SGD +DR
Sbjct: 218 GGFP------ALYAVNPGSGSIRKLSTHGTLNVTPAGGPRGLLAATLNKSGDQEIYLLDR 271
Query: 542 E-----RINHV-------CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589
+ R+ FS DG + F +N G P +Y+V G
Sbjct: 272 QGNIKQRLTQSPGIDISPTFSPDGAQVAFVSNRGG---NP-----------QIYIVSTGG 317
Query: 590 SGLRRLTWNGYENGTPAWHP 609
RRLT+ G N +PAW P
Sbjct: 318 GQPRRLTFGGTYNVSPAWSP 337
>gi|288957825|ref|YP_003448166.1| TolB protein [Azospirillum sp. B510]
gi|288910133|dbj|BAI71622.1| TolB protein [Azospirillum sp. B510]
Length = 450
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 40/197 (20%)
Query: 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI 476
D R+E+ D +T P SPDG ++ ++G+ +++ LD
Sbjct: 246 DTGRQEVLGDFPGMTFA-------PRFSPDGNKVIMSMAQNGNTDIYTLDLRTRRQT--- 295
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS 536
QLTD P IDT PS+SP G I F S+R LY++ DGSG++R+ EG
Sbjct: 296 -QLTDAPGIDTAPSYSPDGQRIVFESDRGGTQQ-----LYIMGADGSGVKRLTFG--EG- 346
Query: 537 GDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596
R +S G+ + FT G+ A + V++ DG+G R LT
Sbjct: 347 ------RYGTPVWSPRGDLIAFTRQRGSSFA--------------VGVIRPDGTGERILT 386
Query: 597 WNGYENGTPAWHPGNQL 613
+ G P W P ++
Sbjct: 387 EAFHVEG-PTWAPNGRV 402
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 72/174 (41%), Gaps = 20/174 (11%)
Query: 39 LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA 98
LTDG ++ +F Q I ++S + PR+Y + + E+L P F R
Sbjct: 209 LTDGQTLVLTPRFSP-TSQEITYMSYFNKKPRVYLFNIDTGRQEVLGDFPGMTFAPRFSP 267
Query: 99 RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVAS 158
NK+ A I Y+ DL+ + T+LT +D +PS S G+ I S
Sbjct: 268 DGNKVIMSMAQNGNTDI-------YTLDLRTRRQTQLTDAPGIDTAPSYSPDGQRIVFES 320
Query: 159 YESRPWPGEFHELNTDIVVFQESDPNKRVIVCE-RGGWPTWS--GDSTIYFHRQ 209
G +L ++ + KR+ E R G P WS GD I F RQ
Sbjct: 321 DR-----GGTQQL---YIMGADGSGVKRLTFGEGRYGTPVWSPRGD-LIAFTRQ 365
>gi|145237008|ref|XP_001391151.1| hypothetical protein ANI_1_1414064 [Aspergillus niger CBS 513.88]
gi|134075616|emb|CAK39282.1| unnamed protein product [Aspergillus niger]
Length = 681
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 135/309 (43%), Gaps = 52/309 (16%)
Query: 312 IPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK 371
+ H E VA K+L N S + + GG + +D + ++ G
Sbjct: 410 VSHQERVAITQKQLG----NSSIVTLNTTGGDLQLVYDPSTADFVSDDETTG-------- 457
Query: 372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQ-IARVSFQLDPSDDNNREEIPCDVKIL 430
+A+ SWSP + +++ G F++ A+ I R + ++ + E + +
Sbjct: 458 -LSAYQPSWSPCGEWLVF-GVGFWFETREASGGWIVRAT-----ANGSYSEVLVNSSYSI 510
Query: 431 TKEETGNNAFPSCSPDGKFLVFRS--------GRSGHKNLFVLDAVNGEFNGDIRQLT-- 480
T++ N+ FPS SPDGK +V+R G + L VLD + R+ T
Sbjct: 511 TEDGALNSGFPSFSPDGKKVVYRVWGADTATYGNASEIGLRVLDL-------ETRKTTVL 563
Query: 481 DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVD 540
W D +P +SP G+LI F+ + + + I+PDG+ LR + +G +
Sbjct: 564 TTEW-DNLPQFSPDGELILFTRKTSTYN----YDVCTIRPDGTDLRVLTSSGANDA---- 614
Query: 541 RERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGY 600
H +S DG ++++ + E + + FQPYG + ++ DG + +T + +
Sbjct: 615 -----HAVWSQDGR-IMWSTGMYGFRFECALYGDTFQPYGQVMIMDADGGNKKLMTNSMW 668
Query: 601 ENGTPAWHP 609
E+ P + P
Sbjct: 669 EDSMPLFLP 677
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 31/111 (27%)
Query: 444 SPDGKFLVFRSGRSGHK-NLFVLDAVNG-EFNGDIRQLTDGPWIDT---------MPSWS 492
SP+G+ + S + K N+++LD G ++N LT+ P P+WS
Sbjct: 153 SPNGRLAAYVSTANNMKANIWILDLQTGAQWN-----LTNTPTTAANSSLMESYLRPAWS 207
Query: 493 PKGDLIAFSSNRHNP---------------DNVEAFSLYVIKPDGSGLRRI 528
P G+ IAFSS+R+ + + SLY I+P+GS R+I
Sbjct: 208 PDGEWIAFSSDRNTQWDGHGVPTFLGRTGWETTQELSLYAIRPNGSDFRQI 258
>gi|381152661|ref|ZP_09864530.1| tol-pal system beta propeller repeat protein TolB [Methylomicrobium
album BG8]
gi|380884633|gb|EIC30510.1| tol-pal system beta propeller repeat protein TolB [Methylomicrobium
album BG8]
Length = 425
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 106/284 (37%), Gaps = 67/284 (23%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A +DG T+ + SWSP + + Y S F+ + A + +
Sbjct: 179 LQVADADGFNPQTIATSSEPLMSPSWSPDGRKMAYVS----FERKTAAIYV--------- 225
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ + ++ E G N PS SPDG L + G +++VL+ +N
Sbjct: 226 ------QTLATGQRVKVAEFPGINGAPSWSPDGGKLALTLSKDGSPDIYVLNLINNSLT- 278
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
++T+ IDT P+WSP G I F+S+R LY + G +RI +G
Sbjct: 279 ---KITNSTAIDTEPAWSPDGSTIVFTSDRGGKPQ-----LYRVSSQGGSEKRITFSGSY 330
Query: 535 GSGDVDRERINHVCFSADGEWLLF----------------TANLGAVMAEPVSWPNQFQP 578
+ FS DG+ + + + + P F P
Sbjct: 331 NA---------RASFSPDGKNIAMVHGNGNDYRIAVLDVASGTINVLTGGPTDESPSFAP 381
Query: 579 YGDLYV-------------VKLDGSGLRRLTWNGYENGTPAWHP 609
GDL + V LDG ++L ++ PAW P
Sbjct: 382 NGDLILYASQRGSGGYLAAVSLDGKMQQKLVFDSNAVREPAWSP 425
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 83/196 (42%), Gaps = 28/196 (14%)
Query: 322 VKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN--S 379
VK +NG+ PS+SPDGG + + + I + + T I + TA +
Sbjct: 234 VKVAEFPGINGA-PSWSPDGGKLALTLSKDGSPDIYVLNLI-NNSLTKITNSTAIDTEPA 291
Query: 380 WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNA 439
WSP +++TS Q+ RVS S + + I NA
Sbjct: 292 WSPDGSTIVFTS------DRGGKPQLYRVS-----SQGGSEKRITF--------SGSYNA 332
Query: 440 FPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
S SPDGK + G + VLD +G N LT GP D PS++P GDLI
Sbjct: 333 RASFSPDGKNIAMVHGNGNDYRIAVLDVASGTIN----VLTGGP-TDESPSFAPNGDLIL 387
Query: 500 FSSNRHNPDNVEAFSL 515
++S R + + A SL
Sbjct: 388 YASQRGSGGYLAAVSL 403
>gi|345865437|ref|ZP_08817621.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins
[endosymbiont of Tevnia jerichonana (vent Tica)]
gi|345123443|gb|EGW53339.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins
[endosymbiont of Tevnia jerichonana (vent Tica)]
Length = 432
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 135/337 (40%), Gaps = 58/337 (17%)
Query: 301 FRGESTEGQS---TIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH--DFELNAG 355
FRGE G S T P+L A V +L L G +F+ I + E
Sbjct: 123 FRGEQLTGYSIPTTAPNLRSTAHHVADLIYEVLLGMKGAFATRIAYITSQQGANGEQQVA 182
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A +DG T++ + +WSP + + Y S F++ R+ + + V
Sbjct: 183 LRVADADGHNPETIVSSSEPLMSPAWSPDGRKIAYVS----FENGRSAIYMQEVY----- 233
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+R +I E G N+ P+ SPDG+ L + G+ +++V D +
Sbjct: 234 --TGHRRKI--------TEFKGINSAPAWSPDGRKLAMTLSKGGNPDIYVFDFTTRK--- 280
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA--- 531
+RQ+T IDT P+WSP G I F+S+R + Y K + + + A
Sbjct: 281 -LRQITRHYAIDTEPAWSPDGRSIVFTSDRGGKPQIYKTPSYGGKAERVTFQNSYNARAS 339
Query: 532 -GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPN-----QFQPYGDLYV- 584
P+G R N G++ + T L + + + +S + F P G + +
Sbjct: 340 YAPDGKSLAMVTREN-------GQYRIATLQLDSGVMQVLSRGSLDESPSFAPNGSMIIY 392
Query: 585 ------------VKLDGSGLRRLTWNGYENGTPAWHP 609
V +DG +RL G + P W P
Sbjct: 393 ASKKGRQGVLSAVSVDGRVHQRLALEGGDLREPVWSP 429
>gi|39995136|ref|NP_951087.1| biopolymer transport TolB-like protein [Geobacter sulfurreducens
PCA]
gi|409910610|ref|YP_006889075.1| biopolymer transport periplasmic beta-propeller repeat protein,
TolB-related [Geobacter sulfurreducens KN400]
gi|67461990|sp|Q74H67.1|TOLB_GEOSL RecName: Full=Protein TolB; Flags: Precursor
gi|39981898|gb|AAR33360.1| biopolymer transport periplasmic beta-propeller repeat protein,
TolB-related protein [Geobacter sulfurreducens PCA]
gi|298504166|gb|ADI82889.1| biopolymer transport periplasmic beta-propeller repeat protein,
TolB-related [Geobacter sulfurreducens KN400]
Length = 432
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 114/298 (38%), Gaps = 62/298 (20%)
Query: 339 PDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTS------ 391
P G I F N I + DG L K+R+ N +SP + + YTS
Sbjct: 168 PFTGKIAFVSTESGNKEIYLMDYDGHNVQRLTKNRSINLNPDFSPNGRELAYTSYRRGNP 227
Query: 392 ---TGPIFQSERATVQIAR------------VSFQLDPSDDNNREEIPC-----DVKILT 431
IF A V R L S D N E D + LT
Sbjct: 228 DLFRREIFTGTEAVVSSHRGINVTGTWSPDGKQLALAMSRDGNSEIYAISRDGRDPRRLT 287
Query: 432 KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491
+ + P+ SPDGK + F S R G +F+++A D+R+LT + P W
Sbjct: 288 THQ-AIDVSPAWSPDGKRIAFVSDRLGKPQVFIMNADGS----DVRRLTTSGAYNVSPRW 342
Query: 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSA 551
SPKGD + + F +Y I DG+G R+ EGS + H +S
Sbjct: 343 SPKGDRLVYCRQEG------GFQIYSIATDGTGDTRLT---SEGSNE-------HPRWSP 386
Query: 552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
DG +L F++ A +YV++ DGSG R+ + + P W P
Sbjct: 387 DGRFLTFSSTRDGGEA--------------IYVMRSDGSGQTRVYRSKGKASHPTWSP 430
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 95/246 (38%), Gaps = 31/246 (12%)
Query: 253 DGKRLAVAT-RRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQST 311
+G+ LA + RR N + EI+ T H V+ G S +G S
Sbjct: 213 NGRELAYTSYRRGNPDLFRREIFTGTEAVVSSHRGINVTGTWSPDGKQLALAMSRDGNSE 272
Query: 312 IPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK 371
I + + L + P++SPDG I F D + I +DGS L
Sbjct: 273 IYAISRDGRDPRRLTTHQAIDVSPAWSPDGKRIAFVSDRLGKPQVFIMNADGSDVRRLTT 332
Query: 372 DRTAFYN---SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK 428
+ YN WSP ++Y FQ S D + D
Sbjct: 333 --SGAYNVSPRWSPKGDRLVYCRQEGGFQI---------YSIATDGTGDTR--------- 372
Query: 429 ILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTM 488
LT E G+N P SPDG+FL F S R G + ++V+ + + +G R + +
Sbjct: 373 -LTSE--GSNEHPRWSPDGRFLTFSSTRDGGEAIYVMRS---DGSGQTR-VYRSKGKASH 425
Query: 489 PSWSPK 494
P+WSP+
Sbjct: 426 PTWSPR 431
>gi|335424108|ref|ZP_08553124.1| translocation protein TolB [Salinisphaera shabanensis E1L3A]
gi|335424448|ref|ZP_08553457.1| translocation protein TolB [Salinisphaera shabanensis E1L3A]
gi|334889133|gb|EGM27425.1| translocation protein TolB [Salinisphaera shabanensis E1L3A]
gi|334890396|gb|EGM28666.1| translocation protein TolB [Salinisphaera shabanensis E1L3A]
Length = 436
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 121/277 (43%), Gaps = 40/277 (14%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERA--TVQIARVSFQLD 413
I +AK +G+ R+ LI + Y+ +P +Y+S PI + ++A V+F ++
Sbjct: 174 ITMAKENGALRYRLI---VSDYDGNNPA---TVYSSRDPIMSPAWSPDGTKLAYVAFDIN 227
Query: 414 PSDDNNREE--IPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471
+ R + +++ ++ E G N P+ SPDG+ L G+ +++ D +
Sbjct: 228 RGRSSLRVQDLASGNIREISSRE-GINGAPAWSPDGRRLAMTLSYRGNPDIYSYDLTTNQ 286
Query: 472 FNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA 531
QLT+ IDT SWSP G IAF+S+R V Y ++ DGS ++R+
Sbjct: 287 LT----QLTNNGAIDTEASWSPDGSRIAFTSDRGGKPQV-----YQMRSDGSQVQRLTFE 337
Query: 532 G---PEGSGDVDRERINHVCFSADGEWL----LFTANLGAVMAEPVSWPNQFQPYG---- 580
G S D ++I V +G + L N+ V P+ F P G
Sbjct: 338 GDSNQRASYSPDGDQITMVQKGGNGFRIAVMDLQNNNIRIVSEGPLDDGPDFAPNGQAII 397
Query: 581 --------DLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+L V DG RL+ +G E PAW P
Sbjct: 398 YARQGRNNELATVSTDGQTRSRLSQSG-EVREPAWGP 433
>gi|388841159|gb|AFK79206.1| serine/threonine protein kinase [uncultured bacterium F42-01]
Length = 840
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 69/146 (47%), Gaps = 23/146 (15%)
Query: 414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
P D E V++ ++TG PS SPD + +VF S GH NL+V+ +G
Sbjct: 542 PVDGTPAENTARAVRV--TKQTGQVQVPSVSPDEREIVFVSDTGGHSNLWVVR-TDGTAM 598
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI-HVAG 532
+ D +P WSP+GD IAF + H + + I+PDGSGLR++ H G
Sbjct: 599 RPLTFEVDPAIAIGLPVWSPRGDWIAFVRSDHG-----QAATWGIRPDGSGLRQLAHGWG 653
Query: 533 PEGSGDVDRERINHVCFSADGEWLLF 558
P C+SADG WL +
Sbjct: 654 P--------------CWSADGRWLYY 665
>gi|148258089|ref|YP_001242674.1| translocation protein TolB [Bradyrhizobium sp. BTAi1]
gi|146410262|gb|ABQ38768.1| protein tolB precursor [Bradyrhizobium sp. BTAi1]
Length = 462
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NLFV+D + +LTD P IDT P +SP G+ I F
Sbjct: 279 PRFSPDGQRIILSLQQGGNSNLFVMDLRSRTTT----RLTDTPAIDTSPCYSPDGNQICF 334
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ +G G +RI EGS + +S G+++ FT
Sbjct: 335 ESDRGGKPQI-----YVMPANGGGAQRISFG--EGS-------YSTPVWSPRGDYIAFTK 380
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G A + ++K DGSG R LT +G+ N P + P ++
Sbjct: 381 QGGGQFA--------------IGIMKTDGSGERILT-SGFHNEGPTFSPNGRV 418
>gi|407775304|ref|ZP_11122599.1| translocation protein TolB [Thalassospira profundimaris WP0211]
gi|407281729|gb|EKF07290.1| translocation protein TolB [Thalassospira profundimaris WP0211]
Length = 456
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 106/261 (40%), Gaps = 57/261 (21%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ I DG+ L R N +SPT + V+Y S + +++ V + +
Sbjct: 202 LAIMDQDGANHRFLSDGRFLVLNPRFSPTAQEVVYMS----YFNDKPRVYVLDI------ 251
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
D E+ D +T P +PDG +V G+ ++ LD E
Sbjct: 252 --DTGELELLGDFPGMTFA-------PRFAPDGNSVVMSQALDGNSEIYGLDLRTRE--- 299
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
RQLT P +DT PS+SP G IAF+S+R A LYV+ DG G++RI G
Sbjct: 300 -KRQLTRHPAVDTSPSYSPDGSRIAFNSDRSG-----AQQLYVMNADGGGVQRISFGG-- 351
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLY--VVKLDGSGL 592
R +S G+ + FT + G G Y V++ DGSG
Sbjct: 352 -------GRYATPVWSPRGDLIAFTKSEG----------------GRYYIGVMRPDGSG- 387
Query: 593 RRLTWNGYENGTPAWHPGNQL 613
RL GY P W P ++
Sbjct: 388 ERLLAEGYLVEGPTWAPNGRV 408
Score = 42.0 bits (97), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 58/139 (41%), Gaps = 11/139 (7%)
Query: 37 HR-LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDR 95
HR L+DG + N +F Q + ++S + PR+Y + + ELL P F R
Sbjct: 212 HRFLSDGRFLVLNPRF-SPTAQEVVYMSYFNDKPRVYVLDIDTGELELLGDFPGMTFAPR 270
Query: 96 PVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIA 155
N + Q S +Y DL+ + +LT + VD SPS S G IA
Sbjct: 271 FAPDGNSVVM-------SQALDGNSEIYGLDLRTREKRQLTRHPAVDTSPSYSPDGSRIA 323
Query: 156 VASYESRPWPGEFHELNTD 174
S R + + +N D
Sbjct: 324 FNS--DRSGAQQLYVMNAD 340
>gi|389693712|ref|ZP_10181806.1| tol-pal system beta propeller repeat protein TolB [Microvirga sp.
WSM3557]
gi|388587098|gb|EIM27391.1| tol-pal system beta propeller repeat protein TolB [Microvirga sp.
WSM3557]
Length = 444
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/296 (24%), Positives = 122/296 (41%), Gaps = 75/296 (25%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ I DG+ R+ D + +SP + + Y++ + ++ VQ+
Sbjct: 187 LAIMDQDGANVRYLTQGDTSVVTPRYSPATQDITYSAQA---EGQQPRVQV--------- 234
Query: 415 SDDNNREEIPCDVKILTKEETGN----NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG 470
+++ T++ GN + P +PDG+ +V + G+ N+F++D G
Sbjct: 235 ----------INLETGTRQVLGNFPDMASSPRFAPDGQRIVMSLQQGGNANIFMMDL--G 282
Query: 471 EFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530
N +LT IDT PS+SP G I F S+R + Y + DGS RRI
Sbjct: 283 SRN--TTRLTSTAAIDTSPSFSPDGSQIVFESDRGGKQQI-----YAMNADGSNQRRISF 335
Query: 531 AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590
+GS + +S G+++ FT A + ++K DGS
Sbjct: 336 G--DGS-------YSQPAWSPRGDYIAFTKQRAGGFA--------------IGIMKPDGS 372
Query: 591 GLRRLTWNGYENGTPAWHPGNQLDL----------GKLRLEDDIGDKLRGQFDEPL 636
G R LT G+ N +P W P Q L GKL + D + G+ ++P+
Sbjct: 373 GERILT-EGFHNESPTWAPNGQYILFFRDPGGQAGGKLYMVD-----ITGRVEQPV 422
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 30/163 (18%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGS-KRWTLIKDRTAFYNSWSPTEKHVIYTSTG 393
PSFSPDG IVF D I +DGS +R D + +WSP ++ +T
Sbjct: 299 PSFSPDGSQIVFESDRGGKQQIYAMNADGSNQRRISFGDGSYSQPAWSPRGDYIAFT--- 355
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF- 452
+RA F + + E +ILT E +N P+ +P+G++++F
Sbjct: 356 ----KQRAG------GFAIGIMKPDGSGE-----RILT--EGFHNESPTWAPNGQYILFF 398
Query: 453 --RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
G++G K L+++D G + Q P + P+WSP
Sbjct: 399 RDPGGQAGGK-LYMVD-----ITGRVEQPVPTPSFASDPTWSP 435
>gi|425765624|gb|EKV04294.1| hypothetical protein PDIP_88020 [Penicillium digitatum Pd1]
gi|425779074|gb|EKV17164.1| hypothetical protein PDIG_16510 [Penicillium digitatum PHI26]
Length = 676
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 115/255 (45%), Gaps = 37/255 (14%)
Query: 368 TLIKDRT--AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPC 425
TLI++ A+ SWSP + V++ G F++ R + + + + E+
Sbjct: 446 TLIQEGLGGAYSPSWSPDGEWVVF-GVGAWFEARDW-----RGGWIVRSTATGSYVEVLT 499
Query: 426 DVKILTKEETG-NNAFPSCSPDGKFLVFRS--------GRSGHKNLFVLDAVNGEFNGDI 476
+ E N FPS S DGK +V+R G L +LD E I
Sbjct: 500 TSSLWINESKNLNTGFPSFSHDGKQVVYRVWGADTAKYGDETEIGLRILDLDTRE----I 555
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS 536
QLT G W D +PS+SP G+ I F+ + + + + I+PDG+ R + +G +
Sbjct: 556 TQLTSG-W-DNLPSFSPDGEFIVFTRKVSSSN----YEVCTIRPDGTDFRILTSSGANDA 609
Query: 537 GDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596
H + DG+ +++++ + E + + FQPYG + ++ DGS R LT
Sbjct: 610 ---------HAVWRQDGK-IMWSSGMYGFQYECALYDDTFQPYGQIMIMDSDGSNKRALT 659
Query: 597 WNGYENGTPAWHPGN 611
+ +E+ P + P +
Sbjct: 660 NSIWEDSMPLFLPND 674
Score = 45.4 bits (106), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 31/112 (27%)
Query: 443 CSPDGKFLVFRSGRSGHK-NLFVLDAVNG-EFNGDIRQLTDGPW----IDTM-----PSW 491
SP+GK + S + + N++V D G E+N +TD P D M P+W
Sbjct: 150 ISPNGKLAAYVSTANNYNANIWVKDLETGAEWN-----ITDTPANRPDEDMMHGNFRPAW 204
Query: 492 SPKGDLIAFSSNRHNP---------------DNVEAFSLYVIKPDGSGLRRI 528
SP G+ +AFSS+R+ ++ + S+Y+I+PDGS LRR+
Sbjct: 205 SPDGNWLAFSSDRNTKWDGHGNLTYLGLAGWEHTQELSIYIIRPDGSDLRRV 256
>gi|188584485|ref|YP_001927930.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Methylobacterium populi BJ001]
gi|179347983|gb|ACB83395.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium
populi BJ001]
Length = 446
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 31/149 (20%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG +VF S R G + ++V+ G + R+L+ G + P+WSP+GDLIAF
Sbjct: 305 PSYSPDGSQIVFESDRGGSQQIYVM----GADGSNPRRLSFGEGSASQPAWSPRGDLIAF 360
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ R F++ V+KPDGSG R + EG + F+ +G++++F
Sbjct: 361 TRQRKG-----GFAICVMKPDGSGERVLT----EGFHN------ESPTFAPNGQYVMFFR 405
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589
+ G Q G LY+V + G
Sbjct: 406 DPGG------------QGGGKLYMVDITG 422
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 97/228 (42%), Gaps = 56/228 (24%)
Query: 425 CDVKILTKEETGN----NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ-- 478
D++ ++ GN +A P SPDG+ LV + G+ ++ +D G Q
Sbjct: 241 IDLETGKRQTVGNFASMSASPRFSPDGRRLVMSVQQGGNADIVTVDL------GSKAQTP 294
Query: 479 LTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGD 538
+T G IDT PS+SP G I F S+R + YV+ DGS RR+ EGS
Sbjct: 295 VTQGLAIDTSPSYSPDGSQIVFESDRGGSQQI-----YVMGADGSNPRRLSFG--EGSA- 346
Query: 539 VDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN 598
+ +S G+ + FT A + V+K DGSG R LT
Sbjct: 347 ------SQPAWSPRGDLIAFTRQRKGGFA--------------ICVMKPDGSGERVLT-E 385
Query: 599 GYENGTPAWHPGNQLDL----------GKLRLEDDIGDKLRGQFDEPL 636
G+ N +P + P Q + GKL + D + G+ ++P+
Sbjct: 386 GFHNESPTFAPNGQYVMFFRDPGGQGGGKLYMVD-----ITGKVEQPV 428
>gi|358375722|dbj|GAA92300.1| tat pathway signal sequence domain-containing protein [Aspergillus
kawachii IFO 4308]
Length = 659
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 22/185 (11%)
Query: 430 LTKEETGNNAFPSCSPDGKFLVFR-----SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW 484
+T++ NN FPS SPDGK +V+R + G+ + L ++ E T+ W
Sbjct: 488 ITEDGALNNGFPSFSPDGKKVVYRVWGADTATYGNASEIGLRVLDLETRNTTVLTTE--W 545
Query: 485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERI 544
D +P +SP G+LI F+ + + + I+PDG+ LR + +G +
Sbjct: 546 -DNLPQFSPDGELILFTRKTSTYN----YDVCTIRPDGTDLRVLTSSGANDA-------- 592
Query: 545 NHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGT 604
H +S DG ++++ + E + + FQPYG + ++ DG + +T + +E+
Sbjct: 593 -HAVWSQDGR-IMWSTGMYGFRFECALYDDTFQPYGQIMIMDKDGGNKKLMTNSMWEDSM 650
Query: 605 PAWHP 609
P + P
Sbjct: 651 PLFLP 655
Score = 42.0 bits (97), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 31/112 (27%)
Query: 443 CSPDGKFLVFRSGRSGHK-NLFVLDAVNG-EFNGDIRQLTDGPWIDT---------MPSW 491
SP+G+ + S + K N++VLD G ++N LT+ P P+W
Sbjct: 152 ISPNGRLAAYVSTANNMKANIWVLDLQTGAQWN-----LTNTPSTAANSSLVESYLRPAW 206
Query: 492 SPKGDLIAFSSNRHNP---------------DNVEAFSLYVIKPDGSGLRRI 528
SP G+ IAFSS+R+ + + SLY I+P+GS R+I
Sbjct: 207 SPDGEWIAFSSDRNTQWDGHGEPTFLGRTGWETTQELSLYAIRPNGSDFRQI 258
>gi|328542544|ref|YP_004302653.1| translocation protein TolB [Polymorphum gilvum SL003B-26A1]
gi|326412290|gb|ADZ69353.1| translocation protein TolB [Polymorphum gilvum SL003B-26A1]
Length = 449
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 106/263 (40%), Gaps = 61/263 (23%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ I DG+ R+ D +SPT + + Y S G DP
Sbjct: 198 LAIMDQDGANMRYLTRGDELVLTPRFSPTSQEITYMSFG-----------------SGDP 240
Query: 415 SDDNNREEIPCDVKILTKEETGN----NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG 470
S +++ +E GN P SPDG+ ++ + G+ N+FV+D +
Sbjct: 241 S------VFLLNIETGQREIVGNFPGMTFAPRFSPDGQRVIMSLQQGGNANIFVMDLRSR 294
Query: 471 EFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530
+LT+ P IDT PS+SP G I F S+R LYV+ DGS +RI
Sbjct: 295 ATT----RLTNTPAIDTSPSYSPDGRQIVFESDRGGSQQ-----LYVMNADGSNAQRISF 345
Query: 531 AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590
GP R + +S G+ + FT Q Q + V++ DG
Sbjct: 346 -GP--------GRYSTPVWSPRGDLIAFT--------------KQHQGRFMIGVMRPDGK 382
Query: 591 GLRRLTWNGYENGTPAWHPGNQL 613
G R LT GY N P+W P ++
Sbjct: 383 GERILT-EGYHNEGPSWAPNGRV 404
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 31/169 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG+ +VF S R G + L+V++A + ++++ GP + P WSP+GDLIAF
Sbjct: 309 PSYSPDGRQIVFESDRGGSQQLYVMNAD----GSNAQRISFGPGRYSTPVWSPRGDLIAF 364
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ F + V++PDG G RI G G ++ +G L+F
Sbjct: 365 TKQHQG-----RFMIGVMRPDGKG-ERILTEGYHNEGP---------SWAPNGRVLVFFR 409
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ P W V L G +R+T + + P+W P
Sbjct: 410 DTPGANGGPQIW-----------TVDLTGYNEQRVTTPAFAS-DPSWSP 446
>gi|407647794|ref|YP_006811553.1| hypothetical protein O3I_033150 [Nocardia brasiliensis ATCC 700358]
gi|407310678|gb|AFU04579.1| hypothetical protein O3I_033150 [Nocardia brasiliensis ATCC 700358]
Length = 310
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 80/332 (24%), Positives = 137/332 (41%), Gaps = 82/332 (24%)
Query: 307 EGQSTIPHLEPVASPVKELRMLRLNGSF----PSFSPDGGLIVFNHDFELNAGIKIAKSD 362
E +S + H + V P + R G +FSPDG +VF + +AG + +
Sbjct: 4 ERESMVEHGDAVTRPDGAELLYRPAGRASAQNAAFSPDGNALVFT---QFDAGYNLGGA- 59
Query: 363 GSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGP----IFQSERATVQI---------ARVS 409
V+ TS GP + + ++A V + ++
Sbjct: 60 ---------------------SLRVLRTSGGPPQVLVRKGDQAAVNLPGAAWNKPTGLIT 98
Query: 410 FQLDPSDDNNREEIP---CDVKILTKEETGNNAFPSCSPDGKFLVFR-----SGRSGHKN 461
F D +D + I ++ T + PS +PDG+++VF+ +G +
Sbjct: 99 FSYDVTDLDEIWTIAPGSAPTRVTTHDSIRGYTEPSFAPDGEWIVFQENDTQTGPGARGS 158
Query: 462 LFVLDAVNGEFNGDIRQLTDGPWIDT---MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVI 518
++ + +G +L DGP DT P+WSP+GD I F S RH + + L I
Sbjct: 159 IWKVRRADGL----PIELVDGPGTDTDNRQPNWSPRGDRIVFQS-RHA--DSADWDLVTI 211
Query: 519 KPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQP 578
DGSG R AG + D FS DG W++++++ + P
Sbjct: 212 ASDGSG-RATLTAGADEDTD--------ASFSPDGNWVVYSSD------------HARTP 250
Query: 579 YGDLYVVKLDGSGL-RRLTWNGYENGTPAWHP 609
+ ++ + DG+GL R+T + + +G P+W P
Sbjct: 251 HAQIFAHRADGTGLPVRVTTSEHYDGAPSWSP 282
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 90/216 (41%), Gaps = 35/216 (16%)
Query: 315 LEPVASPVKELRMLRLNG-SFPSFSPDGGLIVFN-HDFELNAGI-----KIAKSDGSKRW 367
+ P ++P + + G + PSF+PDG IVF +D + G K+ ++DG
Sbjct: 112 IAPGSAPTRVTTHDSIRGYTEPSFAPDGEWIVFQENDTQTGPGARGSIWKVRRADGLPIE 171
Query: 368 TLIKDRTAFYN---SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIP 424
+ T N +WSP +++ S ++ A + ++ SD + R +
Sbjct: 172 LVDGPGTDTDNRQPNWSPRGDRIVFQSR----HADSADWDLVTIA-----SDGSGRATLT 222
Query: 425 CDVKILTKEETGNNAFPSCSPDGKFLVFRS--GRSGHKNLFVLDAVNGEFNGDIRQLTDG 482
T S SPDG ++V+ S R+ H +F A + G ++T
Sbjct: 223 AGADEDTDA--------SFSPDGNWVVYSSDHARTPHAQIF---AHRADGTGLPVRVTTS 271
Query: 483 PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVI 518
D PSWSP G I F S + D A +L+ I
Sbjct: 272 EHYDGAPSWSPDGRWITFES---SADGESATALWRI 304
>gi|374577676|ref|ZP_09650772.1| tol-pal system beta propeller repeat protein TolB [Bradyrhizobium
sp. WSM471]
gi|374425997|gb|EHR05530.1| tol-pal system beta propeller repeat protein TolB [Bradyrhizobium
sp. WSM471]
Length = 448
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 29/173 (16%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NLFV+D + +LTD P IDT PS+SP G I F
Sbjct: 257 PRFSPDGQRVIMSLQQGGNSNLFVMDLRSRS----TTRLTDTPAIDTSPSYSPDGTRICF 312
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ G +RI S D + + +S G+++ FT
Sbjct: 313 ESDRGGRSQI-----YVMAAGGGAAQRISF-----SKDDNNATYSTPVWSPRGDYIAFTR 362
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + V+K DGSG R LT +GY N P + P ++
Sbjct: 363 QGGG----------QF----SIGVMKPDGSGERLLT-SGYHNEGPTFSPNGRV 400
>gi|161831311|ref|YP_001596058.1| TolB protein [Coxiella burnetii RSA 331]
gi|32699692|sp|Q83F59.1|TOLB_COXBU RecName: Full=Protein TolB; Flags: Precursor
gi|161763178|gb|ABX78820.1| TolB protein [Coxiella burnetii RSA 331]
Length = 437
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 90/205 (43%), Gaps = 27/205 (13%)
Query: 314 HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG---IKIAKSDG-SKRWTL 369
L +A + +L +L G FS ++ E A +++A +DG + + L
Sbjct: 142 ELRNLAHHISDLIYQKLTGVRGVFSTKIAYVLVQASSENTAAKYTLEVADADGFNPQPLL 201
Query: 370 IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI 429
+ D +WSP + Y S F+ RA + + +++ +
Sbjct: 202 VSDMPIMSPTWSPDGNKIAYVS----FEGHRAAIYL---------------QDLATGRRQ 242
Query: 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489
E G N P+ SPDGK L ++G+ +++L+ +G +R++T G IDT P
Sbjct: 243 RLSEAPGINGAPAFSPDGKQLALVLTKTGNPKIYILNLADGH----LREITKGWSIDTEP 298
Query: 490 SWSPKGDLIAFSSNRHNPDNVEAFS 514
+WSP G + F+SNR + +S
Sbjct: 299 AWSPDGKSLLFTSNRDGTPQIYNYS 323
>gi|209364240|ref|YP_001425326.2| TolB [Coxiella burnetii Dugway 5J108-111]
gi|212213381|ref|YP_002304317.1| TolB [Coxiella burnetii CbuG_Q212]
gi|215918884|ref|NP_819142.2| TolB [Coxiella burnetii RSA 493]
gi|206583769|gb|AAO89656.2| TolB [Coxiella burnetii RSA 493]
gi|207082173|gb|ABS77388.2| TolB [Coxiella burnetii Dugway 5J108-111]
gi|212011791|gb|ACJ19172.1| TolB [Coxiella burnetii CbuG_Q212]
Length = 440
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 90/205 (43%), Gaps = 27/205 (13%)
Query: 314 HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG---IKIAKSDG-SKRWTL 369
L +A + +L +L G FS ++ E A +++A +DG + + L
Sbjct: 145 ELRNLAHHISDLIYQKLTGVRGVFSTKIAYVLVQASSENTAAKYTLEVADADGFNPQPLL 204
Query: 370 IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI 429
+ D +WSP + Y S F+ RA + + +++ +
Sbjct: 205 VSDMPIMSPTWSPDGNKIAYVS----FEGHRAAIYL---------------QDLATGRRQ 245
Query: 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489
E G N P+ SPDGK L ++G+ +++L+ +G +R++T G IDT P
Sbjct: 246 RLSEAPGINGAPAFSPDGKQLALVLTKTGNPKIYILNLADGH----LREITKGWSIDTEP 301
Query: 490 SWSPKGDLIAFSSNRHNPDNVEAFS 514
+WSP G + F+SNR + +S
Sbjct: 302 AWSPDGKSLLFTSNRDGTPQIYNYS 326
>gi|90426222|ref|YP_534592.1| translocation protein TolB [Rhodopseudomonas palustris BisB18]
gi|90108236|gb|ABD90273.1| Twin-arginine translocation pathway signal [Rhodopseudomonas
palustris BisB18]
Length = 450
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 81/173 (46%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NLFV+D + +LTD P IDT PS++P G I F
Sbjct: 267 PRFSPDGQRVIMSLQQGGNSNLFVMDLRSKSTT----RLTDTPAIDTSPSYAPDGSKICF 322
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ G G +RI EGS + +S G+++ FT
Sbjct: 323 ESDRGGKPQI-----YVMPAGGGGAQRISFG--EGS-------YSTPVWSPRGDYIAFTK 368
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + ++K DGSG R LT +GY N P + P ++
Sbjct: 369 QGGG----------QF----SIGIMKPDGSGERLLT-SGYHNEGPTFAPNGRV 406
>gi|222628523|gb|EEE60655.1| hypothetical protein OsJ_14106 [Oryza sativa Japonica Group]
Length = 153
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 57/114 (50%), Gaps = 17/114 (14%)
Query: 237 RVTPPGVHCFTPAAFHDGKRL-AVATRRKNRNFRHIEIYDLT------------LNPNFH 283
R+TP G H FTPAA L AVATR ++RHIE+ D++ + P H
Sbjct: 23 RITPRGFHAFTPAASPGAPGLVAVATRLAGSDYRHIEVIDMSDDKNAYFEVTRPVAPRVH 82
Query: 284 HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS--PVKELRMLRLNGSFP 335
+NPF+S + +GYHR G + LE + S P + R++GSFP
Sbjct: 83 RFNPFISLDGARVGYHRCWGRGNGDSPLL--LENIKSPGPADTFSLFRIDGSFP 134
>gi|386398096|ref|ZP_10082874.1| tol-pal system beta propeller repeat protein TolB [Bradyrhizobium
sp. WSM1253]
gi|385738722|gb|EIG58918.1| tol-pal system beta propeller repeat protein TolB [Bradyrhizobium
sp. WSM1253]
Length = 448
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 29/173 (16%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NLFV+D + +LTD P IDT PS+SP G I F
Sbjct: 257 PRFSPDGQRVIMSLQQGGNSNLFVMDLRSRS----TTRLTDTPAIDTSPSYSPDGARICF 312
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ G +RI S D + + +S G+++ FT
Sbjct: 313 ESDRGGRSQI-----YVMAAGGGAAQRISF-----SKDDNNATYSTPVWSPRGDYIAFTR 362
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + V+K DGSG R LT +GY N P + P ++
Sbjct: 363 QGGG----------QF----SIGVMKPDGSGERLLT-SGYHNEGPTFSPNGRV 400
>gi|118574595|sp|Q20X63.2|TOLB_RHOPB RecName: Full=Protein TolB; Flags: Precursor
Length = 447
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 81/173 (46%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NLFV+D + +LTD P IDT PS++P G I F
Sbjct: 264 PRFSPDGQRVIMSLQQGGNSNLFVMDLRSKSTT----RLTDTPAIDTSPSYAPDGSKICF 319
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ G G +RI EGS + +S G+++ FT
Sbjct: 320 ESDRGGKPQI-----YVMPAGGGGAQRISFG--EGS-------YSTPVWSPRGDYIAFTK 365
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + ++K DGSG R LT +GY N P + P ++
Sbjct: 366 QGGG----------QF----SIGIMKPDGSGERLLT-SGYHNEGPTFAPNGRV 403
>gi|237746665|ref|ZP_04577145.1| TolB protein [Oxalobacter formigenes HOxBLS]
gi|229378016|gb|EEO28107.1| TolB protein [Oxalobacter formigenes HOxBLS]
Length = 429
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 116/284 (40%), Gaps = 67/284 (23%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++IA SDG R ++ + + SWSP V Y S F++++ V +
Sbjct: 180 LEIADSDGEGRQLALRSKEPIISPSWSPDGTKVAYVS----FEAKKPVVYV--------- 226
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ + + + GNN+ PS SPDG L ++G+ ++ ++A NG G
Sbjct: 227 ------QNLVTRARTVVANYKGNNSAPSWSPDGTKLAVALSKNGYTQIYTVNA-NG---G 276
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH-------------NPDNVEAFSLYVI--- 518
+RQLT I+T P +S G I F+S+R N V S Y I
Sbjct: 277 SLRQLTQTRSINTEPQFSADGKWIYFTSDRSGGPQIYKIGVNGGNAQRVTFGSNYNISPR 336
Query: 519 -KPDGSGL----RR-----IHVAGPEGSGDV---DRERINHVCFSADGEWLLFTANLGAV 565
PDG L RR +++ E ++ D R FS +G+++++ G
Sbjct: 337 VSPDGKSLAYISRRNGGFQLYLMDLENGQEMRLSDTARDESPSFSPNGQFIMYATGSGR- 395
Query: 566 MAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G L VV +DG +RLT + P+W P
Sbjct: 396 -------------RGVLSVVSVDGRVRQRLTMKAADVREPSWGP 426
>gi|115526695|ref|YP_783606.1| translocation protein TolB [Rhodopseudomonas palustris BisA53]
gi|115520642|gb|ABJ08626.1| transport system periplasmic component [Rhodopseudomonas palustris
BisA53]
Length = 450
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NLFV+D + +LTD P IDT PS++P G I F
Sbjct: 267 PRFSPDGQRIIMSMQQGGNSNLFVMDLRSKSTT----RLTDTPAIDTSPSYAPDGSRICF 322
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ G G +RI G G+ + +S G+++ FT
Sbjct: 323 ESDRGGKQQI-----YVMPAGGGGAQRISF----GEGNY-----STPVWSPRGDYIAFTK 368
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + ++K DG+G R LT +GY N P + P ++
Sbjct: 369 QGGG----------QF----SIGIMKPDGTGERLLT-SGYHNEGPTFAPNGRV 406
>gi|377821621|ref|YP_004977992.1| translocation protein TolB [Burkholderia sp. YI23]
gi|357936456|gb|AET90015.1| translocation protein TolB [Burkholderia sp. YI23]
Length = 430
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 110/287 (38%), Gaps = 70/287 (24%)
Query: 356 IKIAKSDGS-KRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG + L +WSP V Y S F+ ++ V I
Sbjct: 178 LQISDSDGQDAKIALSSPEPIISPAWSPDGTKVAYVS----FEKKKPVVYI--------- 224
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++P +++ + GNN+ P+ SPDG+ L R+G+ +F VN + +G
Sbjct: 225 ------HDLPTGRRVVVSNQKGNNSAPAWSPDGRKLAVALSRTGNTQIF---EVNADGSG 275
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHN-------PDNVEAFSLYV---------- 517
+R+LT G IDT P++SP G I F+S+R P E+
Sbjct: 276 -LRRLTQGSSIDTEPAYSPDGSSIYFTSDRGGQPQIYKMPAAGESAGTAQRVTFAGSYNT 334
Query: 518 ---IKPDGSGLRRIHVAG------------PEGSGDVDRERINHVCFSADGEWLLFTANL 562
+ PDG L I G +G D F+A+G+++L+
Sbjct: 335 SPRVSPDGKQLAYISRTGGGFKLYLQDLSSGTATGLTDTTHDESPSFAANGQYILYA--- 391
Query: 563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
Q G L V DG + L+ G P+W P
Sbjct: 392 -----------TQVNGRGVLAAVSTDGRTRQVLSVQGGAVREPSWGP 427
>gi|237748799|ref|ZP_04579279.1| TolB [Oxalobacter formigenes OXCC13]
gi|229380161|gb|EEO30252.1| TolB [Oxalobacter formigenes OXCC13]
Length = 423
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 111/283 (39%), Gaps = 67/283 (23%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++IA +DG + ++ + + SWSP V Y S F++++ V +
Sbjct: 176 LEIADADGGNKLVALRSKEPIISPSWSPDGTRVAYVS----FEAKKPVVYV--------- 222
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ + + + GNN+ PS SPDG L + G+ ++ + A NG G
Sbjct: 223 ------QNLVTRQRTMVANYKGNNSAPSWSPDGSRLAVALSKDGYTQVYTVSA-NG---G 272
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH-------------NPDNVEAFSLYVI--- 518
++Q+T I+T P +SP G I F+S+R NP V Y I
Sbjct: 273 ALKQITQTRSINTEPQFSPDGQWIYFTSDRSGGPQIYKVGVNGGNPQRVTFHGNYNISPR 332
Query: 519 -KPDGSGLRRIHVAG-----------PEGSGDVDRERINHVCFSADGEWLLFTANLGAVM 566
PDG L I G + D R FS +G+++++ N G
Sbjct: 333 VSPDGKSLAYISRRGGYQLYLLDLTNGQEQRLSDTSRDESPSFSPNGQFIMYATNGG--- 389
Query: 567 AEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G L VV +DG +RL+ + P+W P
Sbjct: 390 ------------RGALSVVSVDGRVKQRLSMKASDVREPSWGP 420
>gi|398823078|ref|ZP_10581446.1| tol-pal system beta propeller repeat protein TolB [Bradyrhizobium
sp. YR681]
gi|398226252|gb|EJN12506.1| tol-pal system beta propeller repeat protein TolB [Bradyrhizobium
sp. YR681]
Length = 458
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 79/173 (45%), Gaps = 29/173 (16%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NLFV+D + +LTD P IDT PS+SP G I F
Sbjct: 267 PRFSPDGQRVIMSLQQGGNSNLFVMDLRSRA----TTRLTDTPAIDTSPSYSPDGTRICF 322
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ G +RI S D + +S G+++ FT
Sbjct: 323 ESDRGGRSQI-----YVMAAGGGAAQRISF-----SKDDTNATYSTPVWSPKGDYIAFTR 372
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + V+K DGSG R LT +GY N P + P ++
Sbjct: 373 QGGG----------QF----SIGVMKPDGSGERLLT-SGYHNEGPTFSPNGRV 410
>gi|255936369|ref|XP_002559211.1| Pc13g07820 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583831|emb|CAP91851.1| Pc13g07820 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 680
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 119/257 (46%), Gaps = 45/257 (17%)
Query: 368 TLIKDRTA-FYN-SWSPTEKHVIYTSTGPIFQSE--------RATVQIARVSFQLDPSDD 417
TLI+D A YN SWSP + V++ G F++ R+T + + L S+
Sbjct: 446 TLIQDGLAGAYNPSWSPDGEWVVF-GVGAWFEARDWRGGWIVRSTANASYIDV-LTNSNL 503
Query: 418 NNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR-----SGRSGHKNLFVLDAVNGEF 472
N LT + N FPS S DGK +V+R + + G L ++ E
Sbjct: 504 N-----------LTGTKDLNTGFPSFSHDGKKVVYRVWGADTAKYGDGTEIGLRIIDIET 552
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
+ QLT G W D +PS+SP G+ I F+ + P N E + +I+PDGS R + +G
Sbjct: 553 R-ETTQLTSG-W-DNLPSFSPDGEFIVFT-RKVAPTNYE---ICIIRPDGSDFRILTSSG 605
Query: 533 PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL 592
+ H + DG+ +++++ + E + FQPYG + ++ DGS
Sbjct: 606 ANDA---------HAVWRQDGK-IMWSSGMYGFQYECALYDETFQPYGQIIIMDSDGSNK 655
Query: 593 RRLTWNGYENGTPAWHP 609
LT + +E+ P + P
Sbjct: 656 CPLTNSIWEDSMPLFLP 672
Score = 38.9 bits (89), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 23/85 (27%)
Query: 489 PSWSPKGDLIAFSSNRHNP---------------DNVEAFSLYVIKPDGSGLRRIHVAGP 533
P+WSP G+ +AFSS+R+ ++ + +Y+I+P+GS LRR+
Sbjct: 202 PAWSPDGNWLAFSSDRNTRWEGHGNLTYLGLAGWEHTQELDIYIIRPNGSDLRRV----- 256
Query: 534 EGSGDVDRERINHVCFSADGEWLLF 558
D + +S DG+ L+F
Sbjct: 257 ---AHRDSHCLGSPKWSPDGQRLIF 278
>gi|344942851|ref|ZP_08782138.1| Protein tolB [Methylobacter tundripaludum SV96]
gi|344260138|gb|EGW20410.1| Protein tolB [Methylobacter tundripaludum SV96]
Length = 427
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 77/357 (21%), Positives = 134/357 (37%), Gaps = 81/357 (22%)
Query: 292 NSEFIGYHRFRGESTEG---QSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH 348
N +F + ++GE G S+ L A + +L +L G FS I +
Sbjct: 113 NVQFQLFDVYKGEQLMGYRMTSSAAELRRTAHHISDLIFEKLTGKKGVFSGRIAYITSSR 172
Query: 349 D-FELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIA 406
+ + ++++ +DG T+ + +WSP + + Y S F+ + A + I
Sbjct: 173 QGKQSTSKLQVSDADGFNAQTIASSVEPLMSPAWSPDGRKIAYVS----FEKKSAAIYI- 227
Query: 407 RVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLD 466
+ + + E G N PS SPDG L + G ++++L+
Sbjct: 228 --------------QTLATGERARVAEFPGINGAPSWSPDGAKLALTLSKDGSPDIYILN 273
Query: 467 AVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526
V +LT IDT P+WSP G I F+S+R LY++ G +
Sbjct: 274 LVTRSLT----KLTKSFAIDTEPTWSPDGSHIVFTSDRGGKPQ-----LYIMSSQGGEEK 324
Query: 527 RIHVAG---------PEGSG----------------DVDRERINHVC---------FSAD 552
R+ +G P+G D+ + +N + F+ +
Sbjct: 325 RLTFSGNYNARASFSPDGKSIAMVHGNGSDYRIAVMDMATKSVNVITDGRSDESPSFAPN 384
Query: 553 GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G +L+ + G+ G L V LDG ++L ++ E PAW P
Sbjct: 385 GSMILYASRKGSA--------------GYLSAVSLDGKMQQKLVFDSSEIREPAWSP 427
>gi|430762629|ref|YP_007218486.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins
[Thioalkalivibrio nitratireducens DSM 14787]
gi|430012253|gb|AGA35005.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins
[Thioalkalivibrio nitratireducens DSM 14787]
Length = 429
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 107/276 (38%), Gaps = 51/276 (18%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A SDG+ TL + + WSP + ++Y S F++ R+ V
Sbjct: 182 LEVADSDGANPRTLFRSSEPLMSPDWSPDGRDLVYVS----FENRRSEV----------- 226
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
R+ + + G N+ P SPDG+ + R G N++VL+ +GE
Sbjct: 227 ----FRQNVETGARERIAAFKGINSAPVWSPDGRRIALTLSREGTANIYVLELASGELTP 282
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSL-----------------YV 517
+R IDT P+WSP GD + F+S+R V L
Sbjct: 283 VVRSNA----IDTEPAWSPDGDSLYFTSDRAGSPQVYQVRLPGGTPQRLTFEATSAGAPT 338
Query: 518 IKPDGSGLRRIHVAGPEG----SGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP 573
+ PDG + +H AG G D+D R+ + + F N V+ +
Sbjct: 339 VSPDGKSVVYVH-AGDGGLRLARLDLDSRRVTLLTRGRYDKSPSFAPNGSMVI-----YS 392
Query: 574 NQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ G L V DG +RL E PAW P
Sbjct: 393 TTDRGRGILGSVSRDGQVHQRLAARSGEVREPAWSP 428
>gi|407804378|ref|ZP_11151202.1| tolB protein [Alcanivorax sp. W11-5]
gi|407021671|gb|EKE33435.1| tolB protein [Alcanivorax sp. W11-5]
Length = 430
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 90/220 (40%), Gaps = 28/220 (12%)
Query: 314 HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDR 373
L VA + + +L G +FS + +HD ++ A +DG + T+++ R
Sbjct: 139 QLRDVAHSISDRVFEQLTGIQGAFSTKILYVTVDHDASYPFQLQYADADGHRTQTILRSR 198
Query: 374 TAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK 432
+ SWSP V Y VSF+ D E+ + +
Sbjct: 199 EPIMSPSWSPDGSRVAY------------------VSFEGDGLPKIYVHELASSQRRVVS 240
Query: 433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
E G N P+ SPDG L R G+ ++ LD +G+ RQ T+ IDT P W
Sbjct: 241 SERGINGAPAWSPDGTRLALTLSRDGNPQIYTLDLQSGQLT---RQ-TNSRAIDTEPRWL 296
Query: 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
P G + F+S+R + L DGS +RR+ G
Sbjct: 297 PDGQSLIFTSSRSGGPQIYRLDLR----DGS-VRRLTFEG 331
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 87/212 (41%), Gaps = 37/212 (17%)
Query: 330 LNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVI 388
+NG+ P++SPDG + + N I + R W P + +I
Sbjct: 245 INGA-PAWSPDGTRLALTLSRDGNPQIYTLDLQSGQLTRQTNSRAIDTEPRWLPDGQSLI 303
Query: 389 YTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGN-NAFPSCSPDG 447
+TS S QI ++LD D + V+ LT E GN NA P +PDG
Sbjct: 304 FTS------SRSGGPQI----YRLDLRDGS--------VRRLTFE--GNYNARPDITPDG 343
Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP 507
+ LVF SG + V D G F+ + G +D PS +P G +I + +
Sbjct: 344 RHLVFVHRSSGRFQIGVQDLKRGTFD-----VVTGTNMDESPSVAPNGTMIIYGTQEGGT 398
Query: 508 DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV 539
+EA S+ DG R+ V P G+V
Sbjct: 399 GVLEAVSI-----DG----RVKVNLPSKEGEV 421
>gi|159896545|ref|YP_001542792.1| WD40 domain-containing protein [Herpetosiphon aurantiacus DSM 785]
gi|159889584|gb|ABX02664.1| WD40 domain protein beta Propeller [Herpetosiphon aurantiacus DSM
785]
Length = 620
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 101/220 (45%), Gaps = 22/220 (10%)
Query: 312 IPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK 371
+P+ V +P + S SPDG + F D I ++ ++G+ + +
Sbjct: 406 VPYQGYVGTPSNDFNA--------SVSPDGSKMAFVSDRSGKPQIFVSYTNGASQTQVTL 457
Query: 372 DRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD-PSDDNNREEIPCDVKI 429
D SWS +++ + S + + + A +++ D PS+D + K+
Sbjct: 458 DDCDHQTPSWSADGRYLYWASN--CGTNAKYNIYRAELNWLADQPSNDYPYLSLELRNKV 515
Query: 430 -LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTM 488
LT T +N FP SPDG +VF S R G+ +++++A +G + +LT+ D
Sbjct: 516 NLTNSTTSDNGFPRVSPDGTKIVFTSNRDGNSEVYLMNA-DGT---NQTRLTNSSAEDGA 571
Query: 489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
PSW G IAF SNR NV YV+ DG+G ++
Sbjct: 572 PSWKLDGTKIAFDSNRDGNWNV-----YVMNTDGTGQAQL 606
>gi|260062320|ref|YP_003195400.1| tolB protein [Robiginitalea biformata HTCC2501]
gi|88783882|gb|EAR15053.1| tolB protein [Robiginitalea biformata HTCC2501]
Length = 303
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 126/310 (40%), Gaps = 66/310 (21%)
Query: 315 LEPVASPVKELRMLRLNGSFPSFSPD-----GGLIVFNHDFELNAGIKIAKSDGSKRWTL 369
++ +++ + + + S P S D G I F D + N + I DG+ L
Sbjct: 1 MKTLSAALLVVLAISCKDSKPGVSADQAETGSGKIAFVTDRDGNPEVYIMDGDGANPENL 60
Query: 370 IK-DRTAFYNSWSPTEKHVIYTS----TGPIFQSERATVQIARVSFQLDPSDDNNREEIP 424
+ D F SWS + + S I++ + T Q+ R++ P+ D
Sbjct: 61 TRHDSLDFSPSWSADGTSLSFYSKRDGNAEIYRMDLQTRQLTRLTNH--PATD------- 111
Query: 425 CDVKILTKEETGNNAFPSCSPDGKFLVFRSGR-SGHKNLFVLDAVNGEFNGDIRQLTDGP 483
P SPDG ++F S R S +N++V+D + IRQLT
Sbjct: 112 --------------VLPVPSPDGSQILFMSDRDSLSRNVYVMD----KDGSGIRQLTRNA 153
Query: 484 WIDTMPSWSPKGDLIAFSSN-RHNPDNVEAFS--LYVIKPDGSGLRRIHVAGPEGSGDVD 540
+ P WSP G IAF+ R + D A + ++++ G G++R+ D
Sbjct: 154 AYEESPEWSPDGSQIAFTRQLRDSSDTSHAGNGEIFLMDAQGGGVKRL----------TD 203
Query: 541 RERINH-VCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNG 599
+E + FS DG + F A+ W DLY + DG+GL+ LT +
Sbjct: 204 KEGYDSGAKFSPDGSKIAFYG------AQEDQW--------DLYTINADGTGLQNLTNDA 249
Query: 600 YENGTPAWHP 609
E +P W P
Sbjct: 250 IECYSPDWSP 259
>gi|414168774|ref|ZP_11424737.1| protein tolB [Afipia clevelandensis ATCC 49720]
gi|410887510|gb|EKS35320.1| protein tolB [Afipia clevelandensis ATCC 49720]
Length = 470
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 82/173 (47%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ +V + G+ NLFV+D + +LTD P IDT PS++P G I+F
Sbjct: 289 PRFSPDGQRIVMSMQQGGNSNLFVMDLRSKSMT----RLTDTPAIDTSPSYAPDGSRISF 344
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ +G +RI EGS + +S G+++ FT
Sbjct: 345 ESDRGGKPQI-----YVMGANGGAAQRISFG--EGS-------YSTPVWSPRGDYIAFTK 390
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + ++K DGSG R LT +G+ N P + P ++
Sbjct: 391 QGGG----------QF----SIGIMKPDGSGERILT-SGFHNEGPTFAPNGRV 428
>gi|254564124|ref|YP_003071219.1| protein tolB [Methylobacterium extorquens DM4]
gi|254271402|emb|CAX27415.1| protein tolB precursor [Methylobacterium extorquens DM4]
Length = 446
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 39/153 (25%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS +PDG +VF S R G + ++V+ G + R+L+ G + P+WSP+GDLIAF
Sbjct: 305 PSYAPDGSQIVFESDRGGSQQIYVM----GADGSNPRRLSFGEGSASQPAWSPRGDLIAF 360
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGPEGSGDVDRERINHVCFSADGEWL 556
+ R F++ V+KPDGSG R + H P F+ +G+++
Sbjct: 361 TRQRKG-----GFAICVMKPDGSGERVLTEGFHNESP--------------TFAPNGQYV 401
Query: 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589
+F + G Q G LY+V + G
Sbjct: 402 MFFRDPGG------------QGGGKLYMVDITG 422
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 96/226 (42%), Gaps = 52/226 (23%)
Query: 425 CDVKILTKEETGN----NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT 480
D++ ++ GN +A P SPDG+ LV + G+ ++ +D + +T
Sbjct: 241 IDLETGKRQTVGNFASMSASPRFSPDGRRLVMSVQQGGNADIVTVDLASKAQT----PVT 296
Query: 481 DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVD 540
G IDT PS++P G I F S+R + YV+ DGS RR+ EGS
Sbjct: 297 QGLAIDTSPSYAPDGSQIVFESDRGGSQQI-----YVMGADGSNPRRLSFG--EGSA--- 346
Query: 541 RERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGY 600
+ +S G+ + FT A + V+K DGSG R LT G+
Sbjct: 347 ----SQPAWSPRGDLIAFTRQRKGGFA--------------ICVMKPDGSGERVLT-EGF 387
Query: 601 ENGTPAWHPGNQLDL----------GKLRLEDDIGDKLRGQFDEPL 636
N +P + P Q + GKL + D + G+ ++P+
Sbjct: 388 HNESPTFAPNGQYVMFFRDPGGQGGGKLYMVD-----ITGKVEQPV 428
>gi|431930006|ref|YP_007243052.1| tol-pal system beta propeller repeat protein TolB [Thioflavicoccus
mobilis 8321]
gi|431828309|gb|AGA89422.1| tol-pal system beta propeller repeat protein TolB [Thioflavicoccus
mobilis 8321]
Length = 430
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 107/284 (37%), Gaps = 67/284 (23%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A +DG T++ R + +W+P + + Y S F++ R+ + +
Sbjct: 181 LRVADADGRNPQTIVSSREPIMSPAWAPDGRRLAYVS----FENGRSNIYL--------- 227
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+E+ + L G N P+ SPDG L + G+ ++VLD + E
Sbjct: 228 ------QELASGRRELLASYPGINGSPAFSPDGARLAMTLSKDGNAEIYVLDLLTRE--- 278
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
+R++TD IDT P++SP G+ I F+S+R + Y + G R+
Sbjct: 279 -LRRITDHYAIDTEPAFSPDGNTIVFTSDRGGQPQI-----YRVAAAGGTAERVTFQNDY 332
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGA----------------VMAEPVSWPNQFQP 578
+ F+ DG L G + P+ F P
Sbjct: 333 NA---------RASFAPDGRSLALVTRAGGRFRVARLDLVRNDLRPLSGGPLDESPSFAP 383
Query: 579 YGDLYV-------------VKLDGSGLRRLTWNGYENGTPAWHP 609
G + + +DGS +RLT + PAW P
Sbjct: 384 NGSMIIYATLQNGRGVLAATSIDGSVTQRLTQEASDVREPAWSP 427
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 101/229 (44%), Gaps = 44/229 (19%)
Query: 308 GQSTIPHLEPVASPVKELRMLR--LNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK 365
G+S I +L+ +AS +EL +NGS P+FSPDG + + NA I + ++
Sbjct: 221 GRSNI-YLQELASGRRELLASYPGINGS-PAFSPDGARLAMTLSKDGNAEIYVLDLL-TR 277
Query: 366 RWTLIKDRTAFYN--SWSPTEKHVIYTS----TGPIFQSERATVQIARVSFQLDPSDDNN 419
I D A ++SP +++TS I++ A RV+FQ D
Sbjct: 278 ELRRITDHYAIDTEPAFSPDGNTIVFTSDRGGQPQIYRVAAAGGTAERVTFQND------ 331
Query: 420 REEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL 479
NA S +PDG+ L + G + LD V D+R L
Sbjct: 332 -----------------YNARASFAPDGRSLALVTRAGGRFRVARLDLV----RNDLRPL 370
Query: 480 TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
+ GP +D PS++P G +I +++ ++ + A S+ DGS +R+
Sbjct: 371 SGGP-LDESPSFAPNGSMIIYATLQNGRGVLAATSI-----DGSVTQRL 413
>gi|163854156|ref|YP_001642199.1| beta-propeller repeat-containing to-pal system protein TolB
[Methylobacterium extorquens PA1]
gi|218533101|ref|YP_002423917.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Methylobacterium extorquens CM4]
gi|240141615|ref|YP_002966095.1| protein tolB [Methylobacterium extorquens AM1]
gi|418061456|ref|ZP_12699314.1| Protein tolB [Methylobacterium extorquens DSM 13060]
gi|163665761|gb|ABY33128.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium
extorquens PA1]
gi|218525404|gb|ACK85989.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium
extorquens CM4]
gi|240011592|gb|ACS42818.1| protein tolB precursor [Methylobacterium extorquens AM1]
gi|373564987|gb|EHP91058.1| Protein tolB [Methylobacterium extorquens DSM 13060]
Length = 446
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 39/153 (25%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS +PDG +VF S R G + ++V+ G + R+L+ G + P+WSP+GDLIAF
Sbjct: 305 PSYAPDGSQIVFESDRGGSQQIYVM----GADGSNPRRLSFGEGSASQPAWSPRGDLIAF 360
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGPEGSGDVDRERINHVCFSADGEWL 556
+ R F++ V+KPDGSG R + H P F+ +G+++
Sbjct: 361 TRQRKG-----GFAICVMKPDGSGERVLTEGFHNESP--------------TFAPNGQYV 401
Query: 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589
+F + G Q G LY+V + G
Sbjct: 402 MFFRDPGG------------QGGGKLYMVDITG 422
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 96/226 (42%), Gaps = 52/226 (23%)
Query: 425 CDVKILTKEETGN----NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT 480
D++ ++ GN +A P SPDG+ LV + G+ ++ +D + +T
Sbjct: 241 IDLETGKRQTVGNFASMSASPRFSPDGRRLVMSVQQGGNADIVTVDIASKAQT----PVT 296
Query: 481 DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVD 540
G IDT PS++P G I F S+R + YV+ DGS RR+ EGS
Sbjct: 297 QGLAIDTSPSYAPDGSQIVFESDRGGSQQI-----YVMGADGSNPRRLSFG--EGSA--- 346
Query: 541 RERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGY 600
+ +S G+ + FT A + V+K DGSG R LT G+
Sbjct: 347 ----SQPAWSPRGDLIAFTRQRKGGFA--------------ICVMKPDGSGERVLT-EGF 387
Query: 601 ENGTPAWHPGNQLDL----------GKLRLEDDIGDKLRGQFDEPL 636
N +P + P Q + GKL + D + G+ ++P+
Sbjct: 388 HNESPTFAPNGQYVMFFRDPGGQGGGKLYMVD-----ITGKVEQPV 428
>gi|338972043|ref|ZP_08627422.1| TolB protein precursor [Bradyrhizobiaceae bacterium SG-6C]
gi|338234937|gb|EGP10048.1| TolB protein precursor [Bradyrhizobiaceae bacterium SG-6C]
Length = 470
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 82/173 (47%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ +V + G+ NLFV+D + +LTD P IDT PS++P G I+F
Sbjct: 289 PRFSPDGQRIVMSMQQGGNSNLFVMDLRSKSMT----RLTDTPAIDTSPSYAPDGSRISF 344
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ +G +RI EGS + +S G+++ FT
Sbjct: 345 ESDRGGKPQI-----YVMGANGGAAQRISFG--EGS-------YSTPVWSPRGDYIAFTK 390
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + ++K DGSG R LT +G+ N P + P ++
Sbjct: 391 QGGG----------QF----SIGIMKPDGSGERILT-SGFHNEGPTFAPNGRV 428
>gi|383769445|ref|YP_005448508.1| translocation protein TolB [Bradyrhizobium sp. S23321]
gi|381357566|dbj|BAL74396.1| translocation protein TolB [Bradyrhizobium sp. S23321]
Length = 444
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 79/173 (45%), Gaps = 29/173 (16%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NLFV+D + +LTD P IDT PS+SP G I F
Sbjct: 253 PRFSPDGQRVIMSLQQGGNSNLFVMDLRSRS----TTRLTDTPAIDTSPSYSPDGTRICF 308
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ G +RI S D + +S G+++ FT
Sbjct: 309 ESDRGGRSQI-----YVMSAGGGAAQRISF-----SKDDTNATYSTPVWSPRGDYIAFTR 358
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + V+K DGSG R LT +GY N P + P ++
Sbjct: 359 QGGG----------QF----SIGVMKPDGSGERLLT-SGYHNEGPTFSPNGRV 396
>gi|108760781|ref|YP_633893.1| tolB protein [Myxococcus xanthus DK 1622]
gi|32699694|sp|Q84FF7.1|TOLB_MYXXA RecName: Full=Protein TolB; AltName: Full=Adventurous gliding
motility protein W; Flags: Precursor
gi|118574586|sp|Q1D0D0.1|TOLB_MYXXD RecName: Full=Protein TolB; Flags: Precursor
gi|27804811|gb|AAO22855.1| adventurous gliding motility protein W [Myxococcus xanthus]
gi|108464661|gb|ABF89846.1| tolB protein [Myxococcus xanthus DK 1622]
Length = 431
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 108/278 (38%), Gaps = 53/278 (19%)
Query: 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTG 393
P+ S DG + F + I + G + + + A ++SP K + Y+
Sbjct: 200 LPALSQDGSQVAFTTYRKNRPDIYVQSPGGEAKAVISGGQMATGAAFSPDGKRIAYS--- 256
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453
+ + E A V +A + LT G N P+ SPDGK + F
Sbjct: 257 -LAEGESAQVYVANAD--------------GSGARALTDTPYGLNTSPTWSPDGKRIAFV 301
Query: 454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF 513
S R G ++++ N + G +R+LT + P WSP+GDLI F++ D AF
Sbjct: 302 SNRGGSPQVYIM---NADGTG-VRRLTFQGNYNQTPDWSPRGDLIVFTAR----DERNAF 353
Query: 514 SLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA--NLGAVMAEPVS 571
L+ + + + R+ D+ FS +G ++FT+ N G+
Sbjct: 354 DLFTVSVETGKVTRLT---------QDQGSNEEPAFSPNGRLIVFTSTRNGGS------- 397
Query: 572 WPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
LYV+ DG+ L TP W P
Sbjct: 398 ---------QLYVMTADGNNQLPLRTEKGTYQTPDWSP 426
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 80/188 (42%), Gaps = 34/188 (18%)
Query: 426 DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWI 485
+ + LTK G N P+ S DG + F + R +++V G+ + + G +
Sbjct: 188 NARALTK--GGINILPALSQDGSQVAFTTYRKNRPDIYVQSP-----GGEAKAVISGGQM 240
Query: 486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERIN 545
T ++SP G IA+S E+ +YV DGSG R + D
Sbjct: 241 ATGAAFSPDGKRIAYSLAEG-----ESAQVYVANADGSGARALT--------DTPYGLNT 287
Query: 546 HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTP 605
+S DG+ + F +N G P +Y++ DG+G+RRLT+ G N TP
Sbjct: 288 SPTWSPDGKRIAFVSNRGG---SP-----------QVYIMNADGTGVRRLTFQGNYNQTP 333
Query: 606 AWHPGNQL 613
W P L
Sbjct: 334 DWSPRGDL 341
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 34/172 (19%)
Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW-IDTMPSWSPKGDLIAFSS 502
SPDGK + + ++V N + +G R LTD P+ ++T P+WSP G IAF S
Sbjct: 247 SPDGKRIAYSLAEGESAQVYV---ANADGSG-ARALTDTPYGLNTSPTWSPDGKRIAFVS 302
Query: 503 NRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVC-FSADGEWLLFTAN 561
NR V Y++ DG+G+RR+ G N +S G+ ++FTA
Sbjct: 303 NRGGSPQV-----YIMNADGTGVRRLTFQG----------NYNQTPDWSPRGDLIVFTAR 347
Query: 562 LGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
N F DL+ V ++ + RLT + N PA+ P +L
Sbjct: 348 ---------DERNAF----DLFTVSVETGKVTRLTQDQGSNEEPAFSPNGRL 386
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 114/265 (43%), Gaps = 39/265 (14%)
Query: 238 VTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI----YDLTLNPNFHHYNPFVSANS 293
+T G++ PA DG ++A T RKNR +++ ++ S +
Sbjct: 192 LTKGGINIL-PALSQDGSQVAFTTYRKNRPDIYVQSPGGEAKAVISGGQMATGAAFSPDG 250
Query: 294 EFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN 353
+ I Y GES Q + + + + LN S P++SPDG I F + +
Sbjct: 251 KRIAYSLAEGESA--QVYVANADGSGARALTDTPYGLNTS-PTWSPDGKRIAFVSNRGGS 307
Query: 354 AGIKIAKSDGS--KRWTLIKDRTAFYNS---WSPTEKHVIYTSTGPIFQSERATVQIARV 408
+ I +DG+ +R T + YN WSP +++T+ + ER + V
Sbjct: 308 PQVYIMNADGTGVRRLTFQGN----YNQTPDWSPRGDLIVFTA-----RDERNAFDLFTV 358
Query: 409 SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV 468
S + V LT+++ G+N P+ SP+G+ +VF S R+G L+V+ A
Sbjct: 359 SVET------------GKVTRLTQDQ-GSNEEPAFSPNGRLIVFTSTRNGGSQLYVMTA- 404
Query: 469 NGEFNGDIRQLTDGPWIDTMPSWSP 493
+ N + T+ T P WSP
Sbjct: 405 --DGNNQLPLRTEKGTYQT-PDWSP 426
>gi|413958831|ref|ZP_11398070.1| translocation protein TolB [Burkholderia sp. SJ98]
gi|413941411|gb|EKS73371.1| translocation protein TolB [Burkholderia sp. SJ98]
Length = 430
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 111/287 (38%), Gaps = 70/287 (24%)
Query: 356 IKIAKSDGS-KRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG + L +WSP V Y S F+ ++ V I
Sbjct: 178 LQISDSDGQDAKIALSSPEPIISPAWSPDGTKVAYVS----FEKKKPVVYI--------- 224
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++P +++ + GNN+ PS SPDG+ L R+G+ +F VN + +G
Sbjct: 225 ------HDLPTGRRVVVSNQKGNNSAPSWSPDGRKLAVALSRTGNTQIF---EVNADGSG 275
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHN-------PDNVEAFSLYV---------- 517
+R+LT G IDT P +SP G+ I F+S+R P E+
Sbjct: 276 -LRRLTQGSSIDTEPFYSPDGNWIYFTSDRGGQPQIYKMPAAGESAGAAQRVTFAGAYNT 334
Query: 518 ---IKPDGSGLRRIH------------VAGPEGSGDVDRERINHVCFSADGEWLLFTANL 562
+ PDG L I +A +G D F+A+G+++L+
Sbjct: 335 SPRVSPDGKQLAYISRTGGGFKLYLQDLASGTATGLTDTTHDESPSFAANGQYILYA--- 391
Query: 563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
Q G L V DG + L+ G P+W P
Sbjct: 392 -----------TQVNGRGVLAAVSTDGRTRQVLSVQGGVVREPSWGP 427
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 30/174 (17%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG + + S +++ D G +++ ++ PSWSP G +A
Sbjct: 201 PAWSPDGTKVAYVSFEKKKPVVYIHDLPTGRR----VVVSNQKGNNSAPSWSPDGRKLAV 256
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ +R N + F + DGSGLRR+ +GS +D E +S DG W+ FT+
Sbjct: 257 ALSRTG--NTQIFE---VNADGSGLRRLT----QGS-SIDTEPF----YSPDGNWIYFTS 302
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP-GNQL 613
+ G Q Q Y + +R+T+ G N +P P G QL
Sbjct: 303 DRG----------GQPQIY-KMPAAGESAGAAQRVTFAGAYNTSPRVSPDGKQL 345
>gi|414175500|ref|ZP_11429904.1| protein tolB [Afipia broomeae ATCC 49717]
gi|410889329|gb|EKS37132.1| protein tolB [Afipia broomeae ATCC 49717]
Length = 465
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 33/175 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ +V + G+ NLFV+D + +LTD P IDT PS++P G I F
Sbjct: 284 PRFSPDGQRIVMSMQQGGNSNLFVMDLRSKSMT----RLTDTPAIDTSPSYAPDGGRICF 339
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ +G +RI EGS + +S G+++ FT
Sbjct: 340 ESDRGGKPQI-----YVMGANGGAAQRISFG--EGS-------YSTPVWSPRGDYIAFTK 385
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDL 615
G QF + ++K DGSG R LT +G+ N P + P ++ +
Sbjct: 386 QGGG----------QF----SIGIMKPDGSGERILT-SGFHNEGPTFAPNGRVVM 425
>gi|350559530|ref|ZP_08928370.1| Tol-Pal system beta propeller repeat protein TolB [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349781798|gb|EGZ36081.1| Tol-Pal system beta propeller repeat protein TolB [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 431
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 107/276 (38%), Gaps = 51/276 (18%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A SDG+ TL + + WSP + ++Y S F++ R+ V
Sbjct: 184 LEVADSDGANPRTLFRSSAPLMSPDWSPDGRELVYVS----FENRRSEV----------- 228
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
R+ + + G N+ P SPDG+ + R G N+++L+ +GE
Sbjct: 229 ----FRQNVETGARQRIAAFQGINSAPVWSPDGRRIALTLSRDGTANIYMLELDSGELTP 284
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSL-----------------YV 517
+R IDT P+WSP GD + F+S+R V L
Sbjct: 285 VVRSNA----IDTEPAWSPDGDTLYFTSDRAGSPQVYQLQLPGGTPRRLTFEATSAGAPT 340
Query: 518 IKPDGSGLRRIHVAGPEG----SGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP 573
+ PDG L +H AG G D++ R+ + + F N V+ +
Sbjct: 341 VSPDGKSLVYVH-AGDGGLRLARLDLESRRVTLLTRGRYDKSPSFAPNGSMVI-----YS 394
Query: 574 NQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ G L V DG +RL E PAW P
Sbjct: 395 TTDRGRGILGSVSRDGQVHQRLAARSGEVREPAWSP 430
>gi|165918421|ref|ZP_02218507.1| TolB protein [Coxiella burnetii Q321]
gi|165917927|gb|EDR36531.1| TolB protein [Coxiella burnetii Q321]
Length = 437
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 27/205 (13%)
Query: 314 HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG---IKIAKSDG-SKRWTL 369
L A + +L +L G FS ++ E A +++A +DG + + L
Sbjct: 142 ELRNFAHHISDLIYQKLTGVRGVFSTKIAYVLVQASSENTAAKYTLEVADADGFNPQPLL 201
Query: 370 IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI 429
+ D +WSP + Y S F+ RA + + +++ +
Sbjct: 202 VSDMPIMSPTWSPDGNKIAYVS----FEGHRAAIYL---------------QDLATGRRQ 242
Query: 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489
E G N P+ SPDGK L ++G+ +++L+ +G +R++T G IDT P
Sbjct: 243 RLSEAPGINGAPAFSPDGKQLALVLTKTGNPKIYILNLADGH----LREITKGWSIDTEP 298
Query: 490 SWSPKGDLIAFSSNRHNPDNVEAFS 514
+WSP G + F+SNR + +S
Sbjct: 299 AWSPDGKSLLFTSNRDGTPQIYNYS 323
>gi|170741556|ref|YP_001770211.1| beta-propeller repeat-containing to-pal system protein TolB
[Methylobacterium sp. 4-46]
gi|168195830|gb|ACA17777.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium
sp. 4-46]
Length = 442
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 40/173 (23%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG+ +VF S R G + ++V+ G + R+++ G + P+WSP+GD IAF
Sbjct: 300 PSFSPDGREIVFESDRGGQQQIYVM----GADGSNPRRISFGDGSASQPAWSPRGDYIAF 355
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGPEGSGDVDRERINHVCFSADGEWL 556
+ R +F++ ++KPDGSG R + H GP ++ +G+++
Sbjct: 356 TRQRRG-----SFAICIMKPDGSGERVLTEGFHNEGP--------------TWAPNGQYV 396
Query: 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+F + G Q G LY+V + G + + Y + P W P
Sbjct: 397 MFFRDPGG------------QAGGKLYMVDVTGRVEQPVPTPSYAS-DPTWSP 436
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 106/258 (41%), Gaps = 52/258 (20%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ I DG+ R+ + +SP + + Y S + T Q RV Q+
Sbjct: 188 LAIMDQDGANVRYLTSGEAAVVAPRYSPATQDITYMS--------QTTGQQPRV--QVIN 237
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ R+ IP ++ T P SPDG+ +V G+ +++V+D +
Sbjct: 238 LETGARQVIPTHAEMSTS--------PRFSPDGRRIVMSDQDGGNASIYVMDLASKAQT- 288
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
++T+ IDT PS+SP G I F S+R + YV+ DGS RRI +
Sbjct: 289 ---RITNANAIDTSPSFSPDGREIVFESDRGGQQQI-----YVMGADGSNPRRISFG--D 338
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR 594
GS + +S G+++ FT A + ++K DGSG R
Sbjct: 339 GSA-------SQPAWSPRGDYIAFTRQRRGSFA--------------ICIMKPDGSGERV 377
Query: 595 LTWNGYENGTPAWHPGNQ 612
LT G+ N P W P Q
Sbjct: 378 LT-EGFHNEGPTWAPNGQ 394
Score = 45.4 bits (106), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 30/163 (18%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTG 393
PSFSPDG IVF D I + +DGS R D +A +WSP ++ +T
Sbjct: 300 PSFSPDGREIVFESDRGGQQQIYVMGADGSNPRRISFGDGSASQPAWSPRGDYIAFT--- 356
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF- 452
+ R + I + P R +LT E +N P+ +P+G++++F
Sbjct: 357 ---RQRRGSFAIC----IMKPDGSGER--------VLT--EGFHNEGPTWAPNGQYVMFF 399
Query: 453 --RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
G++G K L+++D G + Q P + P+WSP
Sbjct: 400 RDPGGQAGGK-LYMVD-----VTGRVEQPVPTPSYASDPTWSP 436
>gi|254455821|ref|ZP_05069250.1| Tol-Pal system beta propeller repeat protein TolB [Candidatus
Pelagibacter sp. HTCC7211]
gi|207082823|gb|EDZ60249.1| Tol-Pal system beta propeller repeat protein TolB [Candidatus
Pelagibacter sp. HTCC7211]
Length = 447
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 89/196 (45%), Gaps = 43/196 (21%)
Query: 425 CDVKILTKEETGN----NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT 480
D++ T+E G+ P SPDGK ++ + G ++F +D N + ++T
Sbjct: 238 LDIETGTQEVVGDFPGMTFAPRFSPDGKKIIMSFAKDGKSDIFTMDLENR----IVERIT 293
Query: 481 DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDV 539
+ P IDT PS+SP G IAF+S+R + Y++K DGS ++RI G G+
Sbjct: 294 NHPSIDTSPSYSPNGKFIAFNSDRSGYQQI-----YIMKNDGSDVKRISFGNGIYGTP-- 346
Query: 540 DRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLY--VVKLDGSGLRRLTW 597
+S G+ + FT G Y V++ DG+G R LT
Sbjct: 347 --------VWSPRGDLIAFTK----------------LHNGKFYIGVMRTDGTGERLLTE 382
Query: 598 NGYENGTPAWHPGNQL 613
N Y+ P+W P ++
Sbjct: 383 NYYQEA-PSWSPNGRV 397
>gi|345873816|ref|ZP_08825704.1| Protein tolB [Thiorhodococcus drewsii AZ1]
gi|343916842|gb|EGV27672.1| Protein tolB [Thiorhodococcus drewsii AZ1]
Length = 436
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 111/275 (40%), Gaps = 49/275 (17%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+K+A +DG T++ + +WSP + + Y S F++ RA + +
Sbjct: 187 LKVADADGYAPQTIVSSGEPIMSPAWSPDGRRIAYVS----FENRRAAIYV--------- 233
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+E+ + L G N+ P+ SPDG L + G+ ++ L+ ++ E
Sbjct: 234 ------QELSSGRRDLVASYPGINSSPAFSPDGLRLAMTLSKDGNPEIYSLNLLSREL-- 285
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-- 532
IR LTD IDT P+WSP G I F+S+R + Y + G RI + G
Sbjct: 286 -IR-LTDHYAIDTEPAWSPDGRSIIFTSDRGGSPQI-----YRMSATGGPAERISIDGDY 338
Query: 533 -------PEGSGDVDRERIN---HVCFSADGEWLLFTANLGAVMAEPVSWPNQ------- 575
P+G RIN + ++ + G + P PN
Sbjct: 339 NGRASYSPDGRSIAMVTRINGSFRIGVLDLDRGIMRLVSSGDLDESPSFAPNGSMVIYAT 398
Query: 576 -FQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ G L +DG G +RL+ + + PAW P
Sbjct: 399 IYGGRGVLAAASVDGGGNQRLSQDSGQVREPAWSP 433
>gi|85714380|ref|ZP_01045368.1| TolB [Nitrobacter sp. Nb-311A]
gi|85698827|gb|EAQ36696.1| TolB [Nitrobacter sp. Nb-311A]
Length = 441
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 81/173 (46%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P +PDG+ ++ + G+ NLFV+D + +LTD P IDT PS+SP G I F
Sbjct: 258 PRFAPDGQRIIMSLQQGGNSNLFVMDLRSKSTT----RLTDTPAIDTSPSYSPDGARICF 313
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ G G +RI EGS + +S G+++ FT
Sbjct: 314 ESDRGGKPQI-----YVMGASGGGAQRISFG--EGS-------YSTPVWSPRGDYIAFTK 359
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + ++K DGSG R LT +G+ N P + P ++
Sbjct: 360 QGGG----------QF----SIGIIKPDGSGERILT-SGFHNEGPTFAPNGRV 397
>gi|219870351|ref|YP_002474726.1| translocation protein TolB [Haemophilus parasuis SH0165]
gi|219690555|gb|ACL31778.1| dna-J like membrane chaperone, translocation protein TolB/colicin
tolerance protein/periplasmic component of the Tol
biopolymer transport system [Haemophilus parasuis
SH0165]
Length = 391
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 32/198 (16%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++++ DG +T++K + + WSP + Y + F+++++ V +
Sbjct: 148 LRVSDYDGFNAFTIVKSKEPLMSPEWSPDGSKLAYVT----FENKKSQVVV--------- 194
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+I + + G+N PS SPDG + F S + G N++V G G
Sbjct: 195 ------HDIRSGARKVIGSLRGHNGAPSFSPDGSRVAFASNQDGVLNIYV----TGVGGG 244
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
RQLT +T PSWSP G I F+S+R V Y + G G I G
Sbjct: 245 SPRQLTSNAGNNTEPSWSPDGGYILFTSDRGGLPQV-----YQMSSSGGGASLI---GGS 296
Query: 535 GSGDVDRERINHVCFSAD 552
GSG + + N + S D
Sbjct: 297 GSGKISADGKNLIMVSGD 314
>gi|365858779|ref|ZP_09398687.1| Tol-Pal system beta propeller repeat protein TolB [Acetobacteraceae
bacterium AT-5844]
gi|363713624|gb|EHL97221.1| Tol-Pal system beta propeller repeat protein TolB [Acetobacteraceae
bacterium AT-5844]
Length = 456
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 90/197 (45%), Gaps = 40/197 (20%)
Query: 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI 476
D+ R+E+ + + +T P SPDG+ +V S R G N+FV+D +
Sbjct: 249 DSGRQEVLGNFQGMTLS-------PRFSPDGRSVVLSSTRGGDANIFVVDLASRRE---- 297
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS 536
RQLT G +D P +SP G I F+S+R LYV+ +G G RRI G+
Sbjct: 298 RQLTSGGGLDVSPCYSPDGTQIVFNSDRGGDQQ-----LYVMDANGGGARRISF----GN 348
Query: 537 GDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596
G R +S G+ + FT G A + V++ DGSG R L+
Sbjct: 349 G-----RYATPVWSPRGDLIAFTRMSGGRFA--------------IGVMRPDGSGERILS 389
Query: 597 WNGYENGTPAWHPGNQL 613
G++ +P++ P ++
Sbjct: 390 -EGWQMESPSFAPNGRV 405
>gi|285019183|ref|YP_003376894.1| biopolymer ABC transporter periplasmic protein [Xanthomonas
albilineans GPE PC73]
gi|283474401|emb|CBA16902.1| probable biopolymer transport protein, periplasmic component
[Xanthomonas albilineans GPE PC73]
Length = 439
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 111/285 (38%), Gaps = 51/285 (17%)
Query: 348 HDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIA 406
D + + +A SDG T+++ + SWSP K + Y S F+ +++ I
Sbjct: 178 KDGAMRYALMVADSDGYNPQTIVRSAEPLLSPSWSPDGKKLAYVS----FEHGNSSIYI- 232
Query: 407 RVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLD 466
++I + L G N PS SPDG+ L RSG+ ++V+D
Sbjct: 233 --------------QDIATGARQLVSSFRGINGAPSFSPDGRKLALTLSRSGNPEIYVMD 278
Query: 467 AVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526
+ + QLT+ IDT P+W+P G+ I F+S+R + Y + G
Sbjct: 279 LGSKQLT----QLTNNFGIDTEPTWAPDGNSIYFTSDRGGRPQI-----YQVPATGGSAT 329
Query: 527 RI-----------------HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG-----A 564
RI +A +GSG+ + + A L T +L A
Sbjct: 330 RITFQGNYNATASVSYDGKKIAVAQGSGNSYKIAMMDRSLGAPRWSTLSTGSLDESPSFA 389
Query: 565 VMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
A V + + G LY V D +RL + P+W P
Sbjct: 390 PNASMVLYAAREGGRGVLYAVSADARVRQRLVLADGDVREPSWSP 434
>gi|409438032|ref|ZP_11265126.1| Protein tolB [Rhizobium mesoamericanum STM3625]
gi|408750220|emb|CCM76290.1| Protein tolB [Rhizobium mesoamericanum STM3625]
Length = 436
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 55/98 (56%), Gaps = 15/98 (15%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR-QLTDGPWIDTMPSWSPKGDLIA 499
PS SPDG +VF S R GH+ ++V+ N + +G R DG + + P WSP+GDLIA
Sbjct: 297 PSYSPDGNRIVFESDRGGHQQIYVM---NADGSGQTRISFGDGNY--STPVWSPRGDLIA 351
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGP 533
F+ FS+ V+KPDGSG R + H GP
Sbjct: 352 FTKQSGG-----KFSIGVMKPDGSGERILTTGFHNEGP 384
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 73/173 (42%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ +V + G+ N++ +D + IDT PS+SP G+ I F
Sbjct: 253 PRFSPDGQKVVMSLQQEGNANIYTMDLRSRTTTRLTSTAA----IDTSPSYSPDGNRIVF 308
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGSG RI G G+ +S G+ + FT
Sbjct: 309 ESDRGGHQQI-----YVMNADGSGQTRISF----GDGNYSTP-----VWSPRGDLIAFTK 354
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT G+ N P W P ++
Sbjct: 355 QSGGKFS--------------IGVMKPDGSGERILT-TGFHNEGPTWAPNGRV 392
>gi|73669137|ref|YP_305152.1| hypothetical protein Mbar_A1627 [Methanosarcina barkeri str.
Fusaro]
gi|72396299|gb|AAZ70572.1| hypothetical protein Mbar_A1627 [Methanosarcina barkeri str.
Fusaro]
Length = 615
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 92/190 (48%), Gaps = 30/190 (15%)
Query: 336 SFSPDGGLIVF------NHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNS--WSPTEKHV 387
+ SPD I + D+ ++ G K+ K S R+ LI +T S W+P +
Sbjct: 186 ALSPDASKIAICAHGPADVDYYIDVG-KVGKDLTSFRYGLITHQTQSRQSQIWAPDGSKI 244
Query: 388 IYTS--TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP 445
+Y + ++ E + + I + +D R ++ D + N+ P SP
Sbjct: 245 VYYAGKNESYYEDENSEIYIVK-------ADGTGRIQLTSD--------SANDNSPVFSP 289
Query: 446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH 505
DG +VF S ++G+++++++DA +G+ + QLT P D+ P WSP G IAF SNR
Sbjct: 290 DGSKIVFVSDKAGNEDIWIMDA-DGK---NKVQLTSDPASDSFPVWSPDGKKIAFWSNRG 345
Query: 506 NPDNVEAFSL 515
+N+ +L
Sbjct: 346 GNNNIYTLTL 355
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 28/141 (19%)
Query: 337 FSPDGGLIVF----NHDF--ELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYT 390
++PDG IV+ N + + N+ I I K+DG+ R L D S + +++
Sbjct: 237 WAPDGSKIVYYAGKNESYYEDENSEIYIVKADGTGRIQLTSD--------SANDNSPVFS 288
Query: 391 STGP--IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGK 448
G +F S++A + +D N+ ++ D +++FP SPDGK
Sbjct: 289 PDGSKIVFVSDKA----GNEDIWIMDADGKNKVQLTSD--------PASDSFPVWSPDGK 336
Query: 449 FLVFRSGRSGHKNLFVLDAVN 469
+ F S R G+ N++ L N
Sbjct: 337 KIAFWSNRGGNNNIYTLTLEN 357
>gi|167855025|ref|ZP_02477799.1| Dna-J like membrane chaperone protein [Haemophilus parasuis 29755]
gi|167853873|gb|EDS25113.1| Dna-J like membrane chaperone protein [Haemophilus parasuis 29755]
Length = 428
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 32/198 (16%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++++ DG +T++K + + WSP + Y + F+++++ V +
Sbjct: 185 LRVSDYDGFNAFTIVKSKEPLMSPEWSPDGSKLAYVT----FENKKSQVVV--------- 231
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+I + + G+N PS SPDG + F S + G N++V G G
Sbjct: 232 ------HDIRSGARKVIGSLRGHNGAPSFSPDGSRVAFASNQDGVLNIYV----TGVGGG 281
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
RQLT +T PSWSP G I F+S+R V Y + G G I G
Sbjct: 282 SPRQLTSNAGNNTEPSWSPDGGYILFTSDRGGLPQV-----YQMSSSGGGASLI---GGS 333
Query: 535 GSGDVDRERINHVCFSAD 552
GSG + + N + S D
Sbjct: 334 GSGKISADGKNLIMVSGD 351
>gi|320354281|ref|YP_004195620.1| TolB domain-containing protein [Desulfobulbus propionicus DSM 2032]
gi|320122783|gb|ADW18329.1| TolB domain-containing protein [Desulfobulbus propionicus DSM 2032]
Length = 428
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 32/178 (17%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G N P+ SPDG+ +V + G+ +L+ +D G IRQLT G I+ S+SP G
Sbjct: 240 GLNLAPTFSPDGRTMVVTLSKGGNPDLYSMDR-QGNI---IRQLTSGAGINVSASYSPDG 295
Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW 555
+AF S+R NV YV+ G +R+ PE S V +S G+
Sbjct: 296 QTLAFVSDRSGKPNV-----YVMSAGGGQAKRLTFKCPENSEPV---------WSPKGDE 341
Query: 556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+ FT G + L+V+ +G +R+L+ G +P W P +L
Sbjct: 342 IAFTGLQGGIY--------------QLFVMDRNGGNVRQLSTGGGNYESPTWSPDGRL 385
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 25/169 (14%)
Query: 37 HRLTDGTSINFNAQFV-DGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDR 95
+LT G IN +A + DGQ T+AF+S+RSG P +Y G + + L + C +
Sbjct: 277 RQLTSGAGINVSASYSPDGQ--TLAFVSDRSGKPNVYVMSAGGGQAKRL-TFKCP-ENSE 332
Query: 96 PV--ARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKF 153
PV + +++ F Q+F D +L+ G SP+ S G+
Sbjct: 333 PVWSPKGDEIAFTGLQGGIYQLF-------VMDRNGGNVRQLSTGGGNYESPTWSPDGRL 385
Query: 154 IAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG--GWPTWSG 200
+AV ++I V +S + R + +G +P WSG
Sbjct: 386 LAVTRKSGS---------RSEICVVSKSGKDVRSLFAMKGNQSYPQWSG 425
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497
N+ P SP G + F + G LFV+D NG G++RQL+ G P+WSP G L
Sbjct: 330 NSEPVWSPKGDEIAFTGLQGGIYQLFVMDR-NG---GNVRQLSTGGGNYESPTWSPDGRL 385
Query: 498 IAFS 501
+A +
Sbjct: 386 LAVT 389
>gi|167648382|ref|YP_001686045.1| translocation protein TolB [Caulobacter sp. K31]
gi|167350812|gb|ABZ73547.1| Tol-Pal system beta propeller repeat protein TolB [Caulobacter sp.
K31]
Length = 441
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG + F + G+ +++V+D + + ++T P IDT PS+SP G I F
Sbjct: 259 PRFSPDGGKVAFSVEKGGNSDIYVMDLRSRQST----RITTDPAIDTSPSFSPDGSKIVF 314
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+S+R LY++ DGSG+RRI G R +S G+++ FT
Sbjct: 315 NSDRGGQAQ-----LYIMNADGSGVRRISYGG---------GRYTTPVWSPRGDFIAFTK 360
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G +F + V+K+DG G RL Y + P W P ++
Sbjct: 361 QTGG----------EFH----IGVMKVDG-GDERLLTTSYLDEGPTWAPNGRV 398
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 35/165 (21%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGS--KRWTLIKDRTAFYNS--WSPTEKHVIYT 390
PSFSPDG IVFN D A + I +DGS +R + R Y + WSP + +T
Sbjct: 303 PSFSPDGSKIVFNSDRGGQAQLYIMNADGSGVRRISYGGGR---YTTPVWSPRGDFIAFT 359
Query: 391 -STGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF 449
TG F + + +V D D+ ++LT P+ +P+G+
Sbjct: 360 KQTGGEFH-----IGVMKV----DGGDE----------RLLTTSYLDEG--PTWAPNGRV 398
Query: 450 LVF-RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
L+F R G SG+ L+ +D G I + + P+WSP
Sbjct: 399 LMFSREGSSGNSRLWTVD-----ITGRILRPAAYTGAASDPAWSP 438
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 10/136 (7%)
Query: 39 LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA 98
LTDG+ I +F Q I +++ R IY T +++TE + P +F R
Sbjct: 205 LTDGSYIVMTPRF-SSTSQEITYMALRPTGSSIYLTNLETARTETIGKFPGMVFAPRFSP 263
Query: 99 RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVAS 158
K+ F S + + S +Y DL++ + TR+T +D SPS S G I S
Sbjct: 264 DGGKVAF-SVEKGGN------SDIYVMDLRSRQSTRITTDPAIDTSPSFSPDGSKIVFNS 316
Query: 159 YESRPWPGEFHELNTD 174
R + + +N D
Sbjct: 317 --DRGGQAQLYIMNAD 330
>gi|75676901|ref|YP_319322.1| translocation protein TolB [Nitrobacter winogradskyi Nb-255]
gi|118574589|sp|Q3SP21.1|TOLB_NITWN RecName: Full=Protein TolB; Flags: Precursor
gi|74421771|gb|ABA05970.1| TolB [Nitrobacter winogradskyi Nb-255]
Length = 450
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 81/173 (46%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P +PDG+ ++ + G+ NLFV+D + +LTD P IDT PS+SP G I F
Sbjct: 267 PRFAPDGQRIIMSLQQGGNSNLFVMDLRSKSTT----RLTDTPAIDTSPSYSPDGARICF 322
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ G G +RI EGS + +S G+++ FT
Sbjct: 323 ESDRGGKPQI-----YVMGATGGGAQRISFG--EGS-------YSTPVWSPRGDYIAFTK 368
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + ++K DGSG R LT +G+ N P + P ++
Sbjct: 369 QGGG----------QF----SIGIIKPDGSGERILT-SGFHNEGPTFAPNGRV 406
>gi|145219969|ref|YP_001130678.1| WD40 domain-containing protein [Chlorobium phaeovibrioides DSM 265]
gi|145206133|gb|ABP37176.1| WD-40 repeat-containing protein [Chlorobium phaeovibrioides DSM
265]
Length = 442
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 77/167 (46%), Gaps = 31/167 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG + F S R+ +F+LD G+ ++LT +T PSWSP+GD IA+
Sbjct: 302 PSFSPDGNKMAFVSSRTSAPQIFILDLQTGQ----TKRLTYNGSYNTQPSWSPQGDKIAY 357
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+ N + +++ I DGS LR++ SG E +S G+ ++FT+
Sbjct: 358 STMEKNGE----INIFTINTDGSSLRQLT------SGSRQNE---SPSWSPGGDMIVFTS 404
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
+ Q L+V+ G G RRL E P+W
Sbjct: 405 SR--------------QGQKKLFVMNAAGGGQRRLLQLEGEQMQPSW 437
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 99/261 (37%), Gaps = 48/261 (18%)
Query: 245 CFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL------TLNPNFHHYNPFVSANSEFIGY 298
TP DG+ LA R + I DL ++ + + +P +N+E
Sbjct: 213 ALTPVLSPDGQHLAYTDYASGRP--RLSILDLAGGKRRSVARSGNSIDPGWRSNAEVATT 270
Query: 299 HRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKI 358
F+G+ I + P S + + R PSFSPDG + F I I
Sbjct: 271 LSFQGDQE-----IYLVRPDGSLARRVTNSRGIDLSPSFSPDGNKMAFVSSRTSAPQIFI 325
Query: 359 --AKSDGSKRWTLIKDRTAFYN---SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD 413
++ +KR T YN SWSP + Y++ ++
Sbjct: 326 LDLQTGQTKRLTY----NGSYNTQPSWSPQGDKIAYST--------------------ME 361
Query: 414 PSDDNNREEIPCDVKILTKEETGN--NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471
+ + N I D L + +G+ N PS SP G +VF S R G K LFV++A
Sbjct: 362 KNGEINIFTINTDGSSLRQLTSGSRQNESPSWSPGGDMIVFTSSRQGQKKLFVMNAA--- 418
Query: 472 FNGDIRQLTDGPWIDTMPSWS 492
G R+L PSWS
Sbjct: 419 -GGGQRRLLQLEGEQMQPSWS 438
Score = 46.6 bits (109), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 34/169 (20%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ L + SG L +LD G+ R G ID P W ++
Sbjct: 216 PVLSPDGQHLAYTDYASGRPRLSILDLAGGKRRSVAR---SGNSID--PGWRSNAEVATT 270
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S + + + +Y+++PDGS RR+ S +D FS DG + F
Sbjct: 271 LSFQGDQE------IYLVRPDGSLARRV-----TNSRGIDLS----PSFSPDGNKMAF-- 313
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
++ S P ++++ L +RLT+NG N P+W P
Sbjct: 314 -----VSSRTSAPQ-------IFILDLQTGQTKRLTYNGSYNTQPSWSP 350
>gi|443634272|ref|ZP_21118447.1| putative acylaminoacyl-peptidase [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443345948|gb|ELS60010.1| putative acylaminoacyl-peptidase [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 657
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 37/180 (20%)
Query: 441 PSCSPDGKFLVFRSGRSGHK-NLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
P SPDG+ L F S R G L+++ A GE R+LTD P+ + P WSP G+ +
Sbjct: 69 PRWSPDGRTLAFISDREGDAAQLYIMSAEGGE----ARKLTDIPYGVSKPIWSPDGESVL 124
Query: 500 FS-----------SNRHNPDNVEAFSLYVI--KPDGSGLRRIHVAG----PEGSGDVDRE 542
+ + PD+ E + + K DG GL R A SG V ++
Sbjct: 125 VTVSLGEGESIDDQEKTEPDSFEPIEVQGLSYKRDGKGLTRGAYAQLVLVSVKSGKV-KQ 183
Query: 543 RINH------VCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596
NH FS DG+WL+F+ANL + + S P+ D+Y++ L+ L+++T
Sbjct: 184 LTNHKADHGDSAFSPDGKWLVFSANL--IETDDASKPH------DVYIMSLESGDLKQIT 235
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 21/121 (17%)
Query: 480 TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV 539
T G T P WSP G +AF S+R +A LY++ +G R++ P G
Sbjct: 60 THGKKRSTDPRWSPDGRTLAFISDREG----DAAQLYIMSAEGGEARKL-TDIPYG---- 110
Query: 540 DRERINHVCFSADGEWLLFTANLG---AVMAEPVSWPNQFQPY---GDLYVVKLDGSGLR 593
++ +S DGE +L T +LG ++ + + P+ F+P G Y K DG GL
Sbjct: 111 ----VSKPIWSPDGESVLVTVSLGEGESIDDQEKTEPDSFEPIEVQGLSY--KRDGKGLT 164
Query: 594 R 594
R
Sbjct: 165 R 165
>gi|390950130|ref|YP_006413889.1| tol-pal system beta propeller repeat protein TolB [Thiocystis
violascens DSM 198]
gi|390426699|gb|AFL73764.1| tol-pal system beta propeller repeat protein TolB [Thiocystis
violascens DSM 198]
Length = 436
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 112/277 (40%), Gaps = 53/277 (19%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++IA +DG T++ + +WSP + + Y S F++ RA + +
Sbjct: 187 LRIADADGDNPQTIVSSAEPILSPAWSPDGQRIAYVS----FENRRAAIYV--------- 233
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+++ + L G N P+ SP+G+ L + G+ ++VL+ ++ E
Sbjct: 234 ------QDLNSGRRDLVASYPGINGSPAFSPEGQRLAMTLSKDGNSEIYVLNLLSREL-- 285
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-- 532
IR LTD IDT P+WSP G + F+SNR + Y + G RI + G
Sbjct: 286 -IR-LTDHFAIDTEPAWSPDGRHLIFTSNRGGSPQI-----YRMSATGGAAERISIDGDY 338
Query: 533 -------PEGSGDVDRERIN-----HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPY- 579
P+G RIN V + G L + G + P PN
Sbjct: 339 NARASYAPDGRSVAMVTRINGAFRIGVLDTERGITRLLSN--GTLDESPSFAPNGSMVIY 396
Query: 580 -------GDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G L ++G G +RL+ + + PAW P
Sbjct: 397 ATIHGGRGVLAAASVEGGGNQRLSQDSGQVREPAWSP 433
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 330 LNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN--SWSPTEKHV 387
+NGS P+FSP+G + + N+ I + S+ + D A +WSP +H+
Sbjct: 250 INGS-PAFSPEGQRLAMTLSKDGNSEIYVLNLL-SRELIRLTDHFAIDTEPAWSPDGRHL 307
Query: 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
I+TS + + QI R+S + E I D NA S +PDG
Sbjct: 308 IFTS------NRGGSPQIYRMS-----ATGGAAERISIDGDY--------NARASYAPDG 348
Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
+ + + +G + VLD G I +L +D PS++P G ++ +++
Sbjct: 349 RSVAMVTRINGAFRIGVLDTERG-----ITRLLSNGTLDESPSFAPNGSMVIYAT 398
>gi|312115991|ref|YP_004013587.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Rhodomicrobium vannielii ATCC 17100]
gi|311221120|gb|ADP72488.1| Tol-Pal system beta propeller repeat protein TolB [Rhodomicrobium
vannielii ATCC 17100]
Length = 435
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 82/193 (42%), Gaps = 39/193 (20%)
Query: 429 ILTKEETGNNAFPSCS------PDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG 482
I+T +E FP+ S P G +V G N+F LD + + +LT
Sbjct: 233 IMTGQEEVLGDFPNMSFAPRFSPQGDRVVMSLQEGGSSNIFELDVRSRR----MMRLTQT 288
Query: 483 PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRE 542
IDT P +SP G I F S+R LYV+ DGSG RRI G G
Sbjct: 289 NAIDTAPCYSPDGRQIVFESDREGKQQ-----LYVMNADGSGQRRITF----GDG----- 334
Query: 543 RINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
R + +S G+ + FT + P F + V++ DGSG R LT GY N
Sbjct: 335 RYSTPVWSPRGDLIAFTKQV----------PGGFA----IGVIRPDGSGERVLT-EGYHN 379
Query: 603 GTPAWHPGNQLDL 615
P W P ++ L
Sbjct: 380 EGPTWSPNGRVIL 392
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 15/133 (11%)
Query: 407 RVSFQLDPSDDNNREEIPCDVKILTKEETGN--NAFPSCSPDGKFLVFRSGRSGHKNLFV 464
RV L +N E+ + + + N + P SPDG+ +VF S R G + L+V
Sbjct: 259 RVVMSLQEGGSSNIFELDVRSRRMMRLTQTNAIDTAPCYSPDGRQIVFESDREGKQQLYV 318
Query: 465 LDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG 524
+ N + +G R++T G + P WSP+GDLIAF+ + P F++ VI+PDGSG
Sbjct: 319 M---NADGSGQ-RRITFGDGRYSTPVWSPRGDLIAFT--KQVPG---GFAIGVIRPDGSG 369
Query: 525 LRRI----HVAGP 533
R + H GP
Sbjct: 370 ERVLTEGYHNEGP 382
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 67/173 (38%), Gaps = 32/173 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P P + + + + R+G + + + + G+ L D P + P +SP+GD +
Sbjct: 207 PRFHPLSQEITYTAYRNGEPRVMLRNIMTGQEE----VLGDFPNMSFAPRFSPQGDRVVM 262
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S N+ F L V RR+ + D C+S DG ++F +
Sbjct: 263 SLQEGGSSNI--FELDVRS------RRMMRLTQTNAID------TAPCYSPDGRQIVFES 308
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+ + LYV+ DGSG RR+T+ TP W P L
Sbjct: 309 DR--------------EGKQQLYVMNADGSGQRRITFGDGRYSTPVWSPRGDL 347
>gi|83647596|ref|YP_436031.1| translocation protein TolB [Hahella chejuensis KCTC 2396]
gi|119371045|sp|Q2SCL8.1|TOLB_HAHCH RecName: Full=Protein TolB; Flags: Precursor
gi|83635639|gb|ABC31606.1| Periplasmic component of the Tol biopolymer transport system
[Hahella chejuensis KCTC 2396]
Length = 430
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 29/178 (16%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A +DG + L+K + +WSP K + Y S F+S+R + + V
Sbjct: 180 LEVADADGRRSTELLKRSMPIISPAWSPDGKKLAYVS----FESQRPAIYVQDV------ 229
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
D R ++ G N+ P+ SPDG L + G+ L+VLD N
Sbjct: 230 -DTGTRTQVTS--------FKGLNSAPTWSPDGTKLAVTLSKDGNAELYVLDL----RNN 276
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
+++LT+ IDT SWSP G IAF+S+R + Y++ G RR+ G
Sbjct: 277 SLKRLTNHWAIDTEASWSPDGRTIAFTSDRGGGPQI-----YLVDASGGSPRRLTFEG 329
Score = 45.4 bits (106), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 36/167 (21%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDGK L + S S ++V D G Q+T +++ P+WSP G +A
Sbjct: 203 PAWSPDGKKLAYVSFESQRPAIYVQDVDTGTRT----QVTSFKGLNSAPTWSPDGTKLAV 258
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRI--HVAGPEGSGDVDRERINHVCFSADGEWLLF 558
+ ++ N E LYV+ + L+R+ H A +D E +S DG + F
Sbjct: 259 TLSKDG--NAE---LYVLDLRNNSLKRLTNHWA-------IDTE----ASWSPDGRTIAF 302
Query: 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTP 605
T++ G P +Y+V G RRLT+ G N P
Sbjct: 303 TSDRGG-------GPQ-------IYLVDASGGSPRRLTFEGRYNSRP 335
>gi|408378750|ref|ZP_11176346.1| translocation protein TolB [Agrobacterium albertimagni AOL15]
gi|407747200|gb|EKF58720.1| translocation protein TolB [Agrobacterium albertimagni AOL15]
Length = 434
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + +LT+ IDT PS+SP G I F
Sbjct: 251 PRFSPDGQRVIMSLQQDGNANIYTMDLRSRTTT----RLTNTAAIDTSPSYSPDGSQIVF 306
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LYV+ DGSG RRI +GS + +S G+ + FT
Sbjct: 307 ESDRGGRQQ-----LYVMGADGSGQRRISFG--DGS-------YSTPVWSPRGDLIAFTK 352
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT G+ N P W P ++
Sbjct: 353 QSGGRFS--------------IGVMKTDGSGERILT-TGFHNEGPTWAPNGRV 390
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 59/125 (47%), Gaps = 17/125 (13%)
Query: 417 DNNREEIPCDVKILTKEETGNNAF----PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
D N D++ T N A PS SPDG +VF S R G + L+V+ G
Sbjct: 267 DGNANIYTMDLRSRTTTRLTNTAAIDTSPSYSPDGSQIVFESDRGGRQQLYVM----GAD 322
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI---- 528
R+++ G + P WSP+GDLIAF+ FS+ V+K DGSG R +
Sbjct: 323 GSGQRRISFGDGSYSTPVWSPRGDLIAFTKQSGG-----RFSIGVMKTDGSGERILTTGF 377
Query: 529 HVAGP 533
H GP
Sbjct: 378 HNEGP 382
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 30/163 (18%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGS-KRWTLIKDRTAFYNSWSPTEKHVIYTSTG 393
PS+SPDG IVF D + + +DGS +R D + WSP + +T
Sbjct: 295 PSYSPDGSQIVFESDRGGRQQLYVMGADGSGQRRISFGDGSYSTPVWSPRGDLIAFTKQS 354
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETG-NNAFPSCSPDGKFLVF 452
R S + +D + +ILT TG +N P+ +P+G+ L+F
Sbjct: 355 G-----------GRFSIGVMKTDGSGE-------RILT---TGFHNEGPTWAPNGRVLMF 393
Query: 453 --RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
++ +G L+ +D +G QL P + P+WSP
Sbjct: 394 FRQNAGAGGPQLYSID-----LSGYNEQLVKTPSFASDPAWSP 431
>gi|444336020|ref|ZP_21150646.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
gi|443548903|gb|ELT58026.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
Length = 426
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 42/205 (20%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A DG ++ + + F + +WSP K + Y + F++++A V +
Sbjct: 183 VRVADYDGFNQFIVNRSSQPFMSPAWSPDGKKLAYVT----FENKKAQVVL--------- 229
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+++ + + G+N P+ SPDG L F S + G N++V + +G+
Sbjct: 230 ------QDLVSMARKVVASFPGHNGAPAFSPDGSRLAFASSKDGVLNIYVTNLGSGQ--- 280
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
+ QLT G +T PSWSP G I F+S+R V Y + G G I G
Sbjct: 281 -VSQLTSGAGNNTEPSWSPDGQSIVFTSDRGGSPQV-----YRMSASGGGASLI---GGR 331
Query: 535 GSGDVDRERINHVCFSADGEWLLFT 559
GSG + S+DG L+
Sbjct: 332 GSGQI----------SSDGNLLVMV 346
>gi|387120400|ref|YP_006286283.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Aggregatibacter actinomycetemcomitans D7S-1]
gi|415766570|ref|ZP_11482993.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416031469|ref|ZP_11572539.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|416048295|ref|ZP_11576255.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|416066886|ref|ZP_11582133.1| translocation protein TolB [Aggregatibacter actinomycetemcomitans
serotype f str. D18P1]
gi|429735128|ref|ZP_19269105.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
actinomycetemcomitans Y4]
gi|347993305|gb|EGY34677.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|348001614|gb|EGY42349.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|348002414|gb|EGY43103.1| translocation protein TolB [Aggregatibacter actinomycetemcomitans
serotype f str. D18P1]
gi|348653583|gb|EGY69293.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|385874892|gb|AFI86451.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|429150068|gb|EKX93018.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
actinomycetemcomitans Y4]
Length = 426
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 42/205 (20%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A DG ++ + + F + +WSP K + Y + F++++A V +
Sbjct: 183 VRVADYDGFNQFIVNRSSQPFMSPAWSPDGKKLAYVT----FENKKAQVVL--------- 229
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+++ + + G+N P+ SPDG L F S + G N++V + +G+
Sbjct: 230 ------QDLVSMARKVVASFPGHNGAPAFSPDGSRLAFASSKDGVLNIYVTNLGSGQ--- 280
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
+ QLT G +T PSWSP G I F+S+R V Y + G G I G
Sbjct: 281 -VSQLTSGAGNNTEPSWSPDGQSIVFTSDRGGSPQV-----YRMSASGGGASLI---GGR 331
Query: 535 GSGDVDRERINHVCFSADGEWLLFT 559
GSG + S+DG L+
Sbjct: 332 GSGQI----------SSDGNLLVMV 346
>gi|261868492|ref|YP_003256414.1| translocation protein TolB [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|365966250|ref|YP_004947812.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Aggregatibacter actinomycetemcomitans ANH9381]
gi|415768194|ref|ZP_11483533.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|416091061|ref|ZP_11588191.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|416103207|ref|ZP_11589200.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|444346825|ref|ZP_21154786.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|444349790|ref|ZP_21157132.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
gi|261413824|gb|ACX83195.1| hypothetical protein D11S_1837 [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348007942|gb|EGY48221.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348009072|gb|EGY49265.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|348658148|gb|EGY75724.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|365745163|gb|AEW76068.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|443541255|gb|ELT51709.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|443543896|gb|ELT54001.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
Length = 426
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 42/205 (20%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A DG ++ + + F + +WSP K + Y + F++++A V +
Sbjct: 183 VRVADYDGFNQFIVNRSSQPFMSPAWSPDGKKLAYVT----FENKKAQVVL--------- 229
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+++ + + G+N P+ SPDG L F S + G N++V + +G+
Sbjct: 230 ------QDLVSMARKVVASFPGHNGAPAFSPDGSRLAFASSKDGVLNIYVTNLGSGQ--- 280
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
+ QLT G +T PSWSP G I F+S+R V Y + G G I G
Sbjct: 281 -VSQLTSGAGNNTEPSWSPDGQSIVFTSDRGGSPQV-----YRMSASGGGASLI---GGR 331
Query: 535 GSGDVDRERINHVCFSADGEWLLFT 559
GSG + S+DG L+
Sbjct: 332 GSGQI----------SSDGNLLVMV 346
>gi|416075954|ref|ZP_11585222.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|444344693|ref|ZP_21152902.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|348005497|gb|EGY45975.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|443543594|gb|ELT53780.1| Tol-Pal system beta propeller repeat protein TolB [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
Length = 426
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 42/205 (20%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A DG ++ + + F + +WSP K + Y + F++++A V +
Sbjct: 183 VRVADYDGFNQFIVNRSSQPFMSPAWSPDGKKLAYVT----FENKKAQVVL--------- 229
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+++ + + G+N P+ SPDG L F S + G N++V + +G+
Sbjct: 230 ------QDLVSMARKVVASFPGHNGAPAFSPDGSRLAFASSKDGVLNIYVTNLGSGQ--- 280
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
+ QLT G +T PSWSP G I F+S+R V Y + G G I G
Sbjct: 281 -VSQLTSGAGNNTEPSWSPDGQSIVFTSDRGGSPQV-----YRMSASGGGASLI---GGR 331
Query: 535 GSGDVDRERINHVCFSADGEWLLFT 559
GSG + S+DG L+
Sbjct: 332 GSGQI----------SSDGNLLVMV 346
>gi|384215964|ref|YP_005607130.1| translocation protein TolB [Bradyrhizobium japonicum USDA 6]
gi|354954863|dbj|BAL07542.1| translocation protein TolB [Bradyrhizobium japonicum USDA 6]
Length = 447
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 79/173 (45%), Gaps = 29/173 (16%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NLFV+D + +LTD P IDT PS+SP G I F
Sbjct: 256 PRFSPDGQRVIMSLQQGGNSNLFVMDLRSRS----TTRLTDTPAIDTSPSYSPDGTRICF 311
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ G +RI S D + +S G+++ FT
Sbjct: 312 ESDRGGRSQI-----YVMAAGGGQAQRISF-----SKDDTNATYSTPVWSPRGDYIAFTR 361
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + V+K DGSG R LT +GY N P + P ++
Sbjct: 362 QGGG----------QF----SIGVMKPDGSGERLLT-SGYHNEGPTFSPNGRV 399
>gi|424912428|ref|ZP_18335805.1| tol-pal system beta propeller repeat protein TolB [Rhizobium
leguminosarum bv. viciae USDA 2370]
gi|392848459|gb|EJB00982.1| tol-pal system beta propeller repeat protein TolB [Rhizobium
leguminosarum bv. viciae USDA 2370]
Length = 435
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + +LT+ IDT PS+SP G +AF
Sbjct: 252 PRFSPDGQKVIMSLQQDGNANIYTMDLRSRT----TTRLTNTSAIDTAPSYSPDGQRVAF 307
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGSG +RI S V +S G+ + FT
Sbjct: 308 ESDRGGRQQI-----YVMNADGSGQQRISFGDGSYSTPV---------WSPRGDLIAFTK 353
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT +G+ N P W P ++
Sbjct: 354 QSGGKFS--------------IGVMKTDGSGERILT-SGFHNEGPTWAPNGRV 391
>gi|421598441|ref|ZP_16041865.1| translocation protein TolB [Bradyrhizobium sp. CCGE-LA001]
gi|404269447|gb|EJZ33703.1| translocation protein TolB [Bradyrhizobium sp. CCGE-LA001]
Length = 453
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 29/173 (16%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NLFV+D + +LTD P IDT PS+SP G I F
Sbjct: 261 PRFSPDGQRVIMSLQQGGNSNLFVMDLRSRS----TTRLTDTPAIDTSPSYSPDGARICF 316
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ G +RI S D + +S G+++ FT
Sbjct: 317 ESDRGGRSQI-----YVMAAGGGQAQRISF-----SKDDTNASYSTPVWSPKGDYIAFTR 366
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G A + V+K DGSG R LT +G+ N P + P ++
Sbjct: 367 QGGGQFA--------------IGVMKPDGSGERLLT-SGFHNEGPTFSPNGRV 404
>gi|365881618|ref|ZP_09420920.1| Protein tolB precursor [Bradyrhizobium sp. ORS 375]
gi|365290190|emb|CCD93451.1| Protein tolB precursor [Bradyrhizobium sp. ORS 375]
Length = 376
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NLFV+D + +LTD P IDT P +SP G I F
Sbjct: 193 PRFSPDGQRIILSLQQGGNSNLFVMDLRSRT----TTRLTDTPAIDTSPCYSPDGSQICF 248
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ +G +RI EGS + +S G+++ FT
Sbjct: 249 ESDRGGKPQI-----YVMSANGGNAQRISFG--EGS-------YSTPVWSPRGDYIAFTK 294
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G A + ++K DGSG R LT +G+ N P + P ++
Sbjct: 295 QGGGQFA--------------IGIMKTDGSGERILT-SGFHNEGPTFAPNGRV 332
>gi|407771733|ref|ZP_11119084.1| translocation protein TolB [Thalassospira xiamenensis M-5 = DSM
17429]
gi|407285275|gb|EKF10780.1| translocation protein TolB [Thalassospira xiamenensis M-5 = DSM
17429]
Length = 456
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 122/321 (38%), Gaps = 89/321 (27%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA 354
Y R GES + I ++ P VK L ++ +G+ F DG +V N F
Sbjct: 172 YKRITGESGYFDTRIVYVSESGPGDKRVKRLAIMDQDGANHRFLSDGKFLVLNPRF---- 227
Query: 355 GIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
SPT + V+Y S + +++ V + +
Sbjct: 228 --------------------------SPTAQEVVYMS----YFNDKPRVYVLDI------ 251
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
D E+ D +T P +PDG +V G+ ++ LD E
Sbjct: 252 --DTGELELLGDFPGMTFA-------PRFAPDGNSVVMSQALDGNSEIYQLDLRTRE--- 299
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
RQLT P +DT PS+SP G I F+S+R LYV+ DGSG++RI G
Sbjct: 300 -KRQLTRHPAVDTSPSYSPDGSRITFNSDRSGSQQ-----LYVMNADGSGVQRISFGGGL 353
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLY--VVKLDGSGL 592
+ V +S G+ + FT + G G Y V++ DGSG
Sbjct: 354 YATPV---------WSPRGDLIAFTKSQG----------------GRFYIGVMRPDGSG- 387
Query: 593 RRLTWNGYENGTPAWHPGNQL 613
RL G+ P W P ++
Sbjct: 388 ERLLAEGFLVEGPTWAPNGRV 408
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 11/139 (7%)
Query: 37 HR-LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDR 95
HR L+DG + N +F Q + ++S + PR+Y + + ELL P F R
Sbjct: 212 HRFLSDGKFLVLNPRF-SPTAQEVVYMSYFNDKPRVYVLDIDTGELELLGDFPGMTFAPR 270
Query: 96 PVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIA 155
N + Q S +Y DL+ + +LT + VD SPS S G I
Sbjct: 271 FAPDGNSVVM-------SQALDGNSEIYQLDLRTREKRQLTRHPAVDTSPSYSPDGSRIT 323
Query: 156 VASYESRPWPGEFHELNTD 174
S R + + +N D
Sbjct: 324 FNS--DRSGSQQLYVMNAD 340
>gi|416061408|ref|ZP_11581150.1| LOW QUALITY PROTEIN: Tol-Pal system beta propeller repeat protein
TolB [Aggregatibacter actinomycetemcomitans serotype e
str. SCC393]
gi|347997733|gb|EGY38704.1| LOW QUALITY PROTEIN: Tol-Pal system beta propeller repeat protein
TolB [Aggregatibacter actinomycetemcomitans serotype e
str. SCC393]
Length = 244
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 42/205 (20%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A DG ++ + + F + +WSP K + Y + F++++A V +
Sbjct: 1 MRVADYDGFNQFIVNRSSQPFMSPAWSPDGKKLAYVT----FENKKAQVVL--------- 47
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+++ + + G+N P+ SPDG L F S + G N++V + +G+
Sbjct: 48 ------QDLVSMARKVVASFPGHNGAPAFSPDGSRLAFASSKDGVLNIYVTNLGSGQ--- 98
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
+ QLT G +T PSWSP G I F+S+R V Y + G G I G
Sbjct: 99 -VSQLTSGAGNNTEPSWSPDGQSIVFTSDRGGSPQV-----YRMSASGGGASLI---GGR 149
Query: 535 GSGDVDRERINHVCFSADGEWLLFT 559
GSG + S+DG L+
Sbjct: 150 GSGQI----------SSDGNLLVMV 164
>gi|402820447|ref|ZP_10870014.1| hypothetical protein IMCC14465_12480 [alpha proteobacterium
IMCC14465]
gi|402511190|gb|EJW21452.1| hypothetical protein IMCC14465_12480 [alpha proteobacterium
IMCC14465]
Length = 441
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 77/173 (44%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ R+G+ N++ LD R+LT+ IDT P ++P G+ I F
Sbjct: 257 PRFSPDGQKIIMSLERNGNSNIYTLDLRTRVS----RRLTNTLAIDTAPCYAPDGERIVF 312
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LYV+ DG ++RI G G R +S G+ + FT
Sbjct: 313 ESDRAGRQQ-----LYVMDADGKNVQRISY----GEG-----RYATPVWSPRGDLIAFTK 358
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
L + V+K DGSG R LT GY N PAW P ++
Sbjct: 359 QLKGRFL--------------IGVMKPDGSGERILT-EGYHNEGPAWSPNGRV 396
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 78/169 (46%), Gaps = 31/169 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P +PDG+ +VF S R+G + L+V+DA +G+ ++++++ G P WSP+GDLIAF
Sbjct: 301 PCYAPDGERIVFESDRAGRQQLYVMDA-DGK---NVQRISYGEGRYATPVWSPRGDLIAF 356
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ F + V+KPDGSG RI G G +S +G L F
Sbjct: 357 TKQLKG-----RFLIGVMKPDGSG-ERILTEGYHNEGP---------AWSPNGRVLTFFR 401
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
A P L+ V + G R L G+ + PAW P
Sbjct: 402 EQKGEKAGP-----------GLWTVDVTGYNERPLKTPGFAS-DPAWSP 438
>gi|27382263|ref|NP_773792.1| translocation protein TolB [Bradyrhizobium japonicum USDA 110]
gi|27355434|dbj|BAC52417.1| tolB protein [Bradyrhizobium japonicum USDA 110]
Length = 491
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 29/173 (16%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NLFV+D + +LTD P IDT PS+SP G I F
Sbjct: 299 PRFSPDGQRVIMSLQQGGNSNLFVMDLRSRS----TTRLTDTPAIDTSPSYSPDGTRICF 354
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ G +RI S D + +S G+++ FT
Sbjct: 355 ESDRGGRSQI-----YVMAAGGGAAQRISF-----SKDDTNATYSTPVWSPRGDYIAFTR 404
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + V+K DGSG R LT +G+ N P + P ++
Sbjct: 405 QGGG----------QF----SIGVMKPDGSGERLLT-SGFHNEGPTFSPNGRV 442
>gi|406941811|gb|EKD74197.1| hypothetical protein ACD_45C00035G0001 [uncultured bacterium]
Length = 431
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 104/249 (41%), Gaps = 42/249 (16%)
Query: 379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN 438
+WSP K + Y S F+++R+ + I ++I + L + G N
Sbjct: 204 AWSPNGKQIAYVS----FENKRSAIYI---------------QDIATGNRRLISQFRGIN 244
Query: 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
P+ SPDG+ L + G N+F +D + + + QLT I+T P+W+P G L+
Sbjct: 245 GAPAWSPDGRKLALVLSKEGSPNIFTMDIASRQLS----QLTRDWSINTEPAWAPNGKLL 300
Query: 499 AFSSNRHN-----PDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRER----INHVCF 549
F+SNR N+ ++ I +G+ R A P+G+ V R N
Sbjct: 301 IFTSNRSGGPQIYQKNLVTGAVSRITYEGNYNARASFA-PDGNHLVVLNRESNLFNIGIL 359
Query: 550 SAD-GEWLLFTANLGAVMAEPVSWPN-QFQPYGDLY-------VVKLDGSGLRRLTWNGY 600
D G + + T + G P PN YG LY +V DGS RL
Sbjct: 360 DLDTGVFRVLTNSSGTDNESPSVAPNGSMVLYGTLYAGRNVLAMVASDGSVQIRLPARDG 419
Query: 601 ENGTPAWHP 609
E PAW P
Sbjct: 420 EVQDPAWSP 428
>gi|312796780|ref|YP_004029702.1| TolB protein [Burkholderia rhizoxinica HKI 454]
gi|312168555|emb|CBW75558.1| TolB protein [Burkholderia rhizoxinica HKI 454]
Length = 430
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 114/276 (41%), Gaps = 62/276 (22%)
Query: 356 IKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+KI+ SDG ++ L +WSP + Y S F+ ++ V I
Sbjct: 178 LKISDSDGQNEHIALTSPEPIISPTWSPDGTKLAYVS----FERKKPIVYI--------- 224
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++P +++ ++ GNN+ P+ SPDG L +G+ +F+ VN + +G
Sbjct: 225 ------HDLPTGRRVMVSDQKGNNSAPAWSPDGTKLAVALSLTGNTQIFI---VNADGSG 275
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHN-------PDNVEAFSLYV---------- 517
+R+LT G IDT P++SP G I F+S+R P E+ S
Sbjct: 276 -LRRLTRGHSIDTEPAFSPDGQSIYFTSDRGGQPQIYKMPAQGESASAAQRVTFNGSYNT 334
Query: 518 ---IKPDGSGLRRIHVAG----------PEGSGDV--DRERINHVCFSADGEWLLFTANL 562
+ PDG L I G GS D R F+A+G++LL+ +
Sbjct: 335 SARVSPDGKELAYISRVGGAFRLYLQDLSTGSATALTDTTRDESPSFAANGQYLLYATQV 394
Query: 563 -GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW 597
G + VS + V+ + G G+R +W
Sbjct: 395 NGRQVLAAVSTDGSIR-----QVLSIPGGGVREPSW 425
Score = 38.9 bits (89), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 35/172 (20%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + S +++ D G ++D ++ P+WSP G +A
Sbjct: 201 PTWSPDGTKLAYVSFERKKPIVYIHDLPTGRR----VMVSDQKGNNSAPAWSPDGTKLAV 256
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ + + +++ DGSGLRR+ +D E FS DG+ + FT+
Sbjct: 257 ALSLTGNTQI-----FIVNADGSGLRRLTRG-----HSIDTEP----AFSPDGQSIYFTS 302
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDG---SGLRRLTWNGYENGTPAWHP 609
+ G QP +Y + G S +R+T+NG N + P
Sbjct: 303 DRGG------------QP--QIYKMPAQGESASAAQRVTFNGSYNTSARVSP 340
>gi|149185617|ref|ZP_01863933.1| translocation protein TolB precursor [Erythrobacter sp. SD-21]
gi|148830837|gb|EDL49272.1| translocation protein TolB precursor [Erythrobacter sp. SD-21]
Length = 460
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 103/248 (41%), Gaps = 47/248 (18%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGS-------------FPSFSPDG 341
Y R GES S I ++ P + VK L ++ +G+ P +SPD
Sbjct: 182 YSRLTGESPFFDSRIAYIAETGPKDNRVKRLAIMDSDGANHRFITTGRSTALTPRYSPDY 241
Query: 342 GLIVFNHDFELNAGIKIAK-SDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSER 400
+V+ + N I + GS+ D F WSP + ++Y+ +
Sbjct: 242 KRLVYLSYVDGNPRIYVYDIGTGSQTLVTQSDNPTFAPRWSPDGRWILYS------MAVG 295
Query: 401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHK 460
I RVS Q R E D G + S SPDG+ +VF S RSG +
Sbjct: 296 GNTDIYRVSAQ------GGRSERLTDTP-------GIDIGGSYSPDGRRIVFESDRSGAQ 342
Query: 461 NLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP 520
+V+DA + R+++ G P WSP+GD IAF+ N +F++ V+ P
Sbjct: 343 QCYVMDA----DGSNQRRISFGGSRCATPEWSPRGDQIAFT-------NASSFNISVMSP 391
Query: 521 DGSGLRRI 528
G +R +
Sbjct: 392 SGGNVRTL 399
>gi|32699699|sp|Q89ED5.2|TOLB_BRAJA RecName: Full=Protein TolB; Flags: Precursor
Length = 454
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 29/173 (16%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NLFV+D + +LTD P IDT PS+SP G I F
Sbjct: 262 PRFSPDGQRVIMSLQQGGNSNLFVMDLRSRS----TTRLTDTPAIDTSPSYSPDGTRICF 317
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ G +RI S D + +S G+++ FT
Sbjct: 318 ESDRGGRSQI-----YVMAAGGGAAQRISF-----SKDDTNATYSTPVWSPRGDYIAFTR 367
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + V+K DGSG R LT +G+ N P + P ++
Sbjct: 368 QGGG----------QF----SIGVMKPDGSGERLLT-SGFHNEGPTFSPNGRV 405
>gi|416052261|ref|ZP_11578154.1| translocation protein TolB [Aggregatibacter actinomycetemcomitans
serotype e str. SC1083]
gi|347992176|gb|EGY33592.1| translocation protein TolB [Aggregatibacter actinomycetemcomitans
serotype e str. SC1083]
Length = 426
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 114/273 (41%), Gaps = 52/273 (19%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A DG ++ + + F + +WSP K + Y + F++++A V +
Sbjct: 183 VRVADYDGFNQFIVNRSSQPFMSPAWSPDGKKLAYVT----FENKKAQVVL--------- 229
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+++ + + G+N P+ SPDG L F S + G N++V + +G+
Sbjct: 230 ------QDLVSMARKVVASFPGHNGAPAFSPDGSRLAFASSKDGVLNIYVTNLGSGQ--- 280
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
+ QLT G +T PSWSP G I F+S+R V Y + G G I G
Sbjct: 281 -VSQLTGGAGNNTEPSWSPDGQSIVFTSDRGGSPQV-----YRMSASGGGASLI---GGR 331
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS----------WPNQF-------Q 577
GSG + + ++ D + +L + +E +S PN Q
Sbjct: 332 GSGQISSD--GNILVMVDVNNNIIKKDLTSGSSEVLSSTFLDESPSISPNGIMVIYSSTQ 389
Query: 578 PYGD-LYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G L +V DG RL N + PAW P
Sbjct: 390 GLGKVLQLVSTDGRFKARLPGNDGQVKFPAWSP 422
>gi|408784867|ref|ZP_11196617.1| translocation protein TolB [Rhizobium lupini HPC(L)]
gi|408489206|gb|EKJ97510.1| translocation protein TolB [Rhizobium lupini HPC(L)]
Length = 437
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + +LT+ IDT PS+SP G +AF
Sbjct: 254 PRFSPDGQKVIMSLQQDGNANIYTMDLRSRT----TTRLTNTSAIDTAPSYSPDGQRVAF 309
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGSG +RI +GS + +S G+ + FT
Sbjct: 310 ESDRGGRQQI-----YVMNADGSGQQRISFG--DGS-------YSTPVWSPRGDLIAFTK 355
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT +G+ N P W P ++
Sbjct: 356 QSGGKFS--------------IGVMKTDGSGERILT-SGFHNEGPTWAPNGRV 393
>gi|159185873|ref|NP_356906.2| translocation protein TolB [Agrobacterium fabrum str. C58]
gi|32699707|sp|Q8U9L4.2|TOLB_AGRT5 RecName: Full=Protein TolB; Flags: Precursor
gi|159141007|gb|AAK89691.2| tolB protein [Agrobacterium fabrum str. C58]
Length = 435
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + +LT+ IDT PS+SP G +AF
Sbjct: 252 PRFSPDGQKVIMSLQQDGNANIYTMDLRSRT----TTRLTNTAAIDTAPSYSPDGQRVAF 307
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGSG +R+ +GS + +S G+ + FT
Sbjct: 308 ESDRGGRQQI-----YVMNADGSGQQRVSFG--DGS-------YSTPVWSPRGDLIAFTK 353
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT +G+ N P W P ++
Sbjct: 354 QSGGKFS--------------IGVMKTDGSGERILT-SGFHNEGPTWAPNGRV 391
>gi|373456238|ref|ZP_09548005.1| Tetratricopeptide TPR_2 repeat-containing protein [Caldithrix
abyssi DSM 13497]
gi|371717902|gb|EHO39673.1| Tetratricopeptide TPR_2 repeat-containing protein [Caldithrix
abyssi DSM 13497]
Length = 453
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 97/193 (50%), Gaps = 24/193 (12%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
N AF + S DG ++++S ++G+ +LF+LD E ++Q+T+ P + PS+SP G
Sbjct: 151 ANEAFGAFSADGNQIIYQSDQNGNWDLFILDLTTNE----VKQITNSPAHEENPSFSPDG 206
Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERIN-----HVCFS 550
I ++S + +V+ FS LR I+V +G+ + N H +S
Sbjct: 207 VHIVYTSTEDDHRDVD-FS--------QKLRDIYVMDL-ITGETENLTKNGSDDWHPKYS 256
Query: 551 ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPG 610
G++++F + + P ++ Y D+++++ +G LT + + +G+PA PG
Sbjct: 257 FSGDFIVFVSQRNDLREVPF-----YEMYSDIFIMQNNGRFQLSLTRDEFNDGSPALMPG 311
Query: 611 NQLDLGKLRLEDD 623
+ + G + + D
Sbjct: 312 STDEEGTVIFDSD 324
Score = 42.4 bits (98), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 110/256 (42%), Gaps = 37/256 (14%)
Query: 315 LEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIA-KSDGSKRWTLIKDR 373
L+ + VK++ + PSFSPDG IV+ + + + + K LI
Sbjct: 180 LDLTTNEVKQITNSPAHEENPSFSPDGVHIVYTSTEDDHRDVDFSQKLRDIYVMDLITGE 239
Query: 374 TAFYNSWSPTEKHVIYTSTGP--IFQSERATVQIARVSFQLDPSD-----DNNREEIPCD 426
T + H Y+ +G +F S+R ++ V F SD +N R ++
Sbjct: 240 TENLTKNGSDDWHPKYSFSGDFIVFVSQRNDLR--EVPFYEMYSDIFIMQNNGRFQLS-- 295
Query: 427 VKILTKEETGNNA---FPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP 483
LT++E + + P + + ++F S RSG ++ +D E I QLT P
Sbjct: 296 ---LTRDEFNDGSPALMPGSTDEEGTVIFDSDRSGSFAIYKMDIRTKE----ITQLTHNP 348
Query: 484 WI-DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRE 542
+ D P S GD I F S+R + +Y++ DGS +R+ + P E
Sbjct: 349 DVNDVSPDVSSSGDKITFFSDRDG-----NYEIYLMNNDGSAQQRL-TSNP-------AE 395
Query: 543 RINHVCFSADGEWLLF 558
+N V FS DG +LF
Sbjct: 396 DLNPV-FSPDGNKILF 410
>gi|418465843|ref|ZP_13036775.1| translocation protein TolB [Aggregatibacter actinomycetemcomitans
RhAA1]
gi|359755341|gb|EHK89505.1| translocation protein TolB [Aggregatibacter actinomycetemcomitans
RhAA1]
Length = 426
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 114/273 (41%), Gaps = 52/273 (19%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A DG ++ + + F + +WSP K + Y + F++++A V +
Sbjct: 183 VRVADYDGFNQFIVNRSSQPFMSPAWSPDGKKLAYVT----FENKKAQVVL--------- 229
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+++ + + G+N P+ SPDG L F S + G N++V + +G+
Sbjct: 230 ------QDLVSMARKVVASFPGHNGAPAFSPDGSRLAFASSKDGVLNIYVTNLGSGQ--- 280
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
+ QLT G +T PSWSP G I F+S+R V Y + G G I G
Sbjct: 281 -VSQLTGGAGNNTEPSWSPDGQSIVFTSDRGGSPQV-----YRMSASGGGASLI---GGR 331
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS----------WPNQF-------Q 577
GSG + + ++ D + +L + +E +S PN Q
Sbjct: 332 GSGQISSD--GNILVMVDVNNNIIKKDLTSGSSEVLSSTFLDESPSISPNGIMVIYSSTQ 389
Query: 578 PYGD-LYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G L +V DG RL N + PAW P
Sbjct: 390 GLGKVLQLVSTDGRFKARLPGNDGQVKFPAWSP 422
>gi|189426516|ref|YP_001953693.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Geobacter lovleyi SZ]
gi|189422775|gb|ACD97173.1| Tol-Pal system beta propeller repeat protein TolB [Geobacter
lovleyi SZ]
Length = 430
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 34/175 (19%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497
N P+ +PDG + F S R G +FV+DA NG G++R+L + PSWSPKGD
Sbjct: 290 NVSPAWTPDGSKIAFVSDRLGKPQIFVMDA-NG---GNVRRLITSGSYNVNPSWSPKGDK 345
Query: 498 IAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL 557
+AF+ F ++V DGS ++ G+ +R R +S DG +
Sbjct: 346 LAFAR------MAGGFQIFVANADGSNEIQLTF-----EGNNERPR-----WSPDGRLIT 389
Query: 558 FTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQ 612
F++ G A +YV++ DGSG +++ + + P W P Q
Sbjct: 390 FSSRRGGQEA--------------IYVMRADGSGQTKVSRSKGLSQHPVWTPRGQ 430
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 30/164 (18%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTG 393
P+++PDG I F D I + ++G LI + N SWSP + +
Sbjct: 293 PAWTPDGSKIAFVSDRLGKPQIFVMDANGGNVRRLITSGSYNVNPSWSPKGDKLAF---- 348
Query: 394 PIFQSERATVQIARVS--FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451
AR++ FQ+ ++ + EI LT E GNN P SPDG+ +
Sbjct: 349 ------------ARMAGGFQIFVANADGSNEIQ-----LTFE--GNNERPRWSPDGRLIT 389
Query: 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
F S R G + ++V+ A + +G + ++ + P W+P+G
Sbjct: 390 FSSRRGGQEAIYVMRA---DGSGQTK-VSRSKGLSQHPVWTPRG 429
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 34/197 (17%)
Query: 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI 476
D + + ++++ +G N + SPDG + + G+ ++ + N
Sbjct: 225 DLYKRALSSNLEVPVSSRSGLNITGAWSPDGNRIALALSKDGNTEIYTVAKDGSAPN--- 281
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS 536
+LT + P+W+P G IAF S+R + +V+ +G +RR+ + GS
Sbjct: 282 -RLTVSHAANVSPAWTPDGSKIAFVSDRLGKPQI-----FVMDANGGNVRRLITS---GS 332
Query: 537 GDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596
+V+ +S G+ L F G FQ ++V DGS +LT
Sbjct: 333 YNVN------PSWSPKGDKLAFARMAGG-----------FQ----IFVANADGSNEIQLT 371
Query: 597 WNGYENGTPAWHPGNQL 613
+ G N P W P +L
Sbjct: 372 FEG-NNERPRWSPDGRL 387
>gi|367474931|ref|ZP_09474421.1| periplasmic protein [Bradyrhizobium sp. ORS 285]
gi|365272808|emb|CCD86889.1| periplasmic protein [Bradyrhizobium sp. ORS 285]
Length = 376
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NLFV+D + +LTD P IDT P +SP G I F
Sbjct: 193 PRFSPDGQRIILSLQQGGNSNLFVMDLRSRT----TTRLTDTPAIDTSPCYSPDGSQICF 248
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ +G +RI EGS + +S G+++ FT
Sbjct: 249 ESDRGGKPQI-----YVMSANGGNAQRISFG--EGS-------YSTPVWSPRGDYIAFTK 294
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G A + ++K DGSG R LT +G+ N P + P ++
Sbjct: 295 QGGGQFA--------------IGIMKTDGSGERILT-SGFHNEGPTFAPNGRV 332
>gi|444913614|ref|ZP_21233764.1| tolB protein precursor protein [Cystobacter fuscus DSM 2262]
gi|444715738|gb|ELW56602.1| tolB protein precursor protein [Cystobacter fuscus DSM 2262]
Length = 377
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 116/303 (38%), Gaps = 61/303 (20%)
Query: 338 SPDGGLIVFNHDFELNA----GIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTST 392
SPDG ++ E+ + + DG R + + R N SW+P ++ S
Sbjct: 89 SPDGAAMLVVSAAEVQGLHMEQLWLVPLDGGPRVKVTEPRGRARNPSWAPDGSWLVAESD 148
Query: 393 GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAF-PSCSPDGKFLV 451
F D R+ D ++L F PS SPDG +V
Sbjct: 149 AQGFS-------------------DVVRQAPRADAEVLGLATAREGNFEPSVSPDGSRVV 189
Query: 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVE 511
F S R G L+V+ A D+R+LT P D P WSP G I+F S+R
Sbjct: 190 FVSSREGDPELYVMKA----DGTDVRRLTHFPREDVAPRWSPDGQWISFLSDRDG----- 240
Query: 512 AFSLYVIKPDGSGLRRIHVAGPEG-----SGDVDRERINHVCFSADGE------WLLFTA 560
LYV+K DG+ LR + + G + D R+ V S D + W++ A
Sbjct: 241 RTRLYVMKADGTELRPVSASATVGDEREPAWSPDGRRLAFVAASKDPKETKARIWVVDVA 300
Query: 561 N---LGAVMAEPVSWPNQFQPYG-------------DLYVVKLDGSGLRRLTWNGYENGT 604
+ + V + P G +L++++ DGSG LT + +
Sbjct: 301 GGEPVALTRGQAVEDQPAWSPEGKHLVFASERTGDVELFLMRADGSGQTPLTTSRGADWL 360
Query: 605 PAW 607
P W
Sbjct: 361 PRW 363
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 86/200 (43%), Gaps = 32/200 (16%)
Query: 331 NGSF-PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVI 388
G+F PS SPDG +VF E + + + K+DG+ L R WSP + +
Sbjct: 174 EGNFEPSVSPDGSRVVFVSSREGDPELYVMKADGTDVRRLTHFPREDVAPRWSPDGQWIS 233
Query: 389 YTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGK 448
+ S + R + +D + + G+ P+ SPDG+
Sbjct: 234 FLSD-----------RDGRTRLYVMKADGTELRPVSASATV------GDEREPAWSPDGR 276
Query: 449 FLVFRSGRSGHKN----LFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
L F + K ++V+D GE LT G ++ P+WSP+G + F+S R
Sbjct: 277 RLAFVAASKDPKETKARIWVVDVAGGEPVA----LTRGQAVEDQPAWSPEGKHLVFASER 332
Query: 505 HNPDNVEAFSLYVIKPDGSG 524
+VE L++++ DGSG
Sbjct: 333 TG--DVE---LFLMRADGSG 347
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 78/187 (41%), Gaps = 22/187 (11%)
Query: 284 HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGL 343
++ P VS + + + R EG + ++ + V+ L P +SPDG
Sbjct: 176 NFEPSVSPDGSRVVFVSSR----EGDPELYVMKADGTDVRRLTHFPREDVAPRWSPDGQW 231
Query: 344 IVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN---SWSPTEKHVIYTSTGPIFQSER 400
I F D + + + K+DG++ + T +WSP + + + + + +
Sbjct: 232 ISFLSDRDGRTRLYVMKADGTELRPVSASATVGDEREPAWSPDGRRLAFVAASKDPKETK 291
Query: 401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHK 460
A + + V+ + LT+ + + P+ SP+GK LVF S R+G
Sbjct: 292 ARIWVVDVAG--------------GEPVALTRGQAVEDQ-PAWSPEGKHLVFASERTGDV 336
Query: 461 NLFVLDA 467
LF++ A
Sbjct: 337 ELFLMRA 343
>gi|335033168|ref|ZP_08526537.1| translocation protein [Agrobacterium sp. ATCC 31749]
gi|333795345|gb|EGL66673.1| translocation protein [Agrobacterium sp. ATCC 31749]
Length = 443
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + +LT+ IDT PS+SP G +AF
Sbjct: 260 PRFSPDGQKVIMSLQQDGNANIYTMDLRSRT----TTRLTNTAAIDTAPSYSPDGQRVAF 315
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGSG +R+ +GS + +S G+ + FT
Sbjct: 316 ESDRGGRQQI-----YVMNADGSGQQRVSFG--DGS-------YSTPVWSPRGDLIAFTK 361
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT +G+ N P W P ++
Sbjct: 362 QSGGKFS--------------IGVMKTDGSGERILT-SGFHNEGPTWAPNGRV 399
Score = 38.5 bits (88), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 10/141 (7%)
Query: 34 FHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFH 93
F+ LT+ I +F + Q + ++S PR+Y + + + E++ + P F
Sbjct: 201 FNVRNLTNSNDIVLTPRFSPNR-QEVTYMSFEGQQPRVYLLQLETGQREVVGNFPGMTFS 259
Query: 94 DRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKF 153
R K+ I + +Q + +Y+ DL++ TRLT +D +PS S G+
Sbjct: 260 PRFSPDGQKV--IMSLQQDGN-----ANIYTMDLRSRTTTRLTNTAAIDTAPSYSPDGQR 312
Query: 154 IAVASYESRPWPGEFHELNTD 174
+A S R + + +N D
Sbjct: 313 VAFES--DRGGRQQIYVMNAD 331
>gi|303256190|ref|ZP_07342206.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderiales
bacterium 1_1_47]
gi|331001246|ref|ZP_08324872.1| Tol-Pal system beta propeller repeat protein TolB [Parasutterella
excrementihominis YIT 11859]
gi|302860919|gb|EFL83994.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderiales
bacterium 1_1_47]
gi|329568973|gb|EGG50769.1| Tol-Pal system beta propeller repeat protein TolB [Parasutterella
excrementihominis YIT 11859]
Length = 437
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 24/153 (15%)
Query: 353 NAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411
N I +A SDG ++ R + WSP + + YTS F++ + TV I +S
Sbjct: 185 NYAIMVADSDGYNPQVALRIRHPIISIDWSPNGRQIAYTS----FETGKPTVWIHDLS-- 238
Query: 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471
R ++ GNN+ P+ SPDG L + G +++LD VNG+
Sbjct: 239 -----TGKRRQVAA--------FRGNNSAPAFSPDGGTLAVALSKDGGTKIYLLD-VNGQ 284
Query: 472 FNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
++RQ T G IDT P++SP G I F+S+R
Sbjct: 285 ---NLRQFTTGSSIDTEPAFSPDGKYIYFTSDR 314
>gi|296447816|ref|ZP_06889729.1| Tol-Pal system beta propeller repeat protein TolB [Methylosinus
trichosporium OB3b]
gi|296254675|gb|EFH01789.1| Tol-Pal system beta propeller repeat protein TolB [Methylosinus
trichosporium OB3b]
Length = 438
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 54/99 (54%), Gaps = 12/99 (12%)
Query: 431 TKEETGNNAF---PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT 487
T T NA PS SP G +VF S R G + ++V+ A NG G R+++ GP +
Sbjct: 286 TTRLTDTNAIDTSPSYSPSGAEIVFESDRGGSQQIYVMSA-NG---GGARRISFGPGHYS 341
Query: 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526
P WSPKGD IAF+ AF + V+KPDGSG R
Sbjct: 342 TPVWSPKGDYIAFTRQSSG-----AFGIGVMKPDGSGER 375
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 71/169 (42%), Gaps = 33/169 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ +V + NL+ +D + +LTD IDT PS+SP G I F
Sbjct: 255 PRFSPDGQKIVMSLSQGASTNLYAMDLRSRTTT----RLTDTNAIDTSPSYSPSGAEIVF 310
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ +G G RRI GP + +S G+++ FT
Sbjct: 311 ESDRGGSQQI-----YVMSANGGGARRISF-GP--------GHYSTPVWSPKGDYIAFTR 356
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ V+K DGSG R LT G+ N P W P
Sbjct: 357 QSSGAFG--------------IGVMKPDGSGERILT-EGFHNEGPTWAP 390
>gi|452841073|gb|EME43010.1| hypothetical protein DOTSEDRAFT_153255 [Dothistroma septosporum
NZE10]
Length = 596
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 128/301 (42%), Gaps = 53/301 (17%)
Query: 329 RLNGSFPSFSPDGGLIVFN--HDFELNAGIKIAKSDGSKRWTLIKDRTA----------- 375
R+ FP+ S G L N HD GI I + + + + +T
Sbjct: 333 RIGEQFPALSKQGKLASPNDRHD-----GITIQYPNNTDSYDIFNSQTVANATQYDGPLL 387
Query: 376 -FYNSWSPTEKHVIYTSTGPIFQSERA--TVQIARVSFQLDPSDDNNREEIPCDVKILTK 432
+WSP + + ++ G F +R+ T I R+ +D ++ E +
Sbjct: 388 VLQPAWSPDGEWLAFSLGGCGFLQDRSKYTSWIYRIR-----ADGSHYERL--------T 434
Query: 433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
+ T N+ +PS + DG LV+R + + L +LD + R LT D PS+S
Sbjct: 435 DGTVNSGYPSYAADGNSLVYRVWGAEY-GLRILDLKTHK----TRVLTTDTLNDNTPSFS 489
Query: 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD 552
P G+ I F+ R N N + + I+PDGS L+ + + H ++AD
Sbjct: 490 PDGEKIVFT-RRMNESN---YDICTIRPDGSDLQVLTTSAANDG---------HATWTAD 536
Query: 553 GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQ 612
G + +++ E ++ QPYG ++++ DG R+LT + +E+ P + P
Sbjct: 537 GR-IHWSSGQNGWTNEAAAYWTAEQPYGKIWIMDADGGNKRQLTDSIWEDAMPIYFPNEI 595
Query: 613 L 613
L
Sbjct: 596 L 596
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 25/193 (12%)
Query: 442 SCSPDGKFLVFRSGRS--GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
S SPDG+F+VF S R+ G+ +LF + A D+ +L P+++ SP +A
Sbjct: 38 SFSPDGQFIVFTSERNGPGNADLFRIRAD----GSDLEELVATPFVEDQGVLSPDNSKLA 93
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV--CFSADGEWLL 557
+ S +++V+ D + + E V + +S DG+W++
Sbjct: 94 YVSTSAAEGQDWKANIWVM--DLKTKSKTCLTNTEEVKGVPWSPDGYFKPQWSPDGDWII 151
Query: 558 FTANLGAVMAEPVSWPNQFQPYG-------DLYVVKLDGSGLRR-LTWNGYENGTPAWHP 609
F+++ +W N G +Y ++ DGS RR +T GY G+P W
Sbjct: 152 FSSD------RNTAWTNHGDGTGWEHTQELSIYAIRPDGSDFRRIITMPGYSLGSPKWSK 205
Query: 610 -GNQLDLGKLRLE 621
G ++ L LE
Sbjct: 206 DGKRISFYHLELE 218
>gi|374336312|ref|YP_005092999.1| translocation protein TolB [Oceanimonas sp. GK1]
gi|372985999|gb|AEY02249.1| translocation protein TolB [Oceanimonas sp. GK1]
Length = 433
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 125/323 (38%), Gaps = 51/323 (15%)
Query: 310 STIP--HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW 367
+T+P L A + ++ +L G +F + H + + IA DG
Sbjct: 136 ATVPAAQLRQYAHRIADIVFEKLTGIKGAFLTRIAYVNVQHGAQYPYQLMIADYDGFNEQ 195
Query: 368 TLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD 426
L++ R + +WSP + + Y S F++++A + + ++I
Sbjct: 196 VLLRSREPLMSPAWSPDGRKLAYVS----FENKKAEIVV---------------QDIYSQ 236
Query: 427 VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID 486
+ + + G N P+ SPDG L R G ++VL +G+ ++T+ ID
Sbjct: 237 QRRVVSSQPGINGAPAWSPDGSRLALVLSRDGQPEVYVLTLASGQLT----RVTNNRTID 292
Query: 487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSG-DVDRERIN 545
T P+WS G I F S R V Y +P RR+ G G V + N
Sbjct: 293 TEPTWSADGKSIYFVSERGGRPQV-----YRTEPGSGNARRVTFEGDMNLGPRVTADGQN 347
Query: 546 HVCFS-ADGEWLLFTANLGA----VMAE------PVSWPN--------QFQPYGDLYVVK 586
V S + G++ + L V+ E P PN +Q L +V
Sbjct: 348 MVLVSRSQGQYRIARQELDGGYLQVLTETQLDESPSPAPNGTMIIYSTTYQGRQVLSLVS 407
Query: 587 LDGSGLRRLTWNGYENGTPAWHP 609
+DG RL + +PAW P
Sbjct: 408 MDGRFKARLPARSGDVRSPAWSP 430
>gi|269837976|ref|YP_003320204.1| peptidase S9 prolyl oligopeptidase active site domain-containing
protein [Sphaerobacter thermophilus DSM 20745]
gi|269787239|gb|ACZ39382.1| peptidase S9 prolyl oligopeptidase active site domain protein
[Sphaerobacter thermophilus DSM 20745]
Length = 663
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 107/266 (40%), Gaps = 47/266 (17%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSK--RWTLIKDRTAFYNSWSPTEKHVIYTS- 391
P +SPDG + F D + + + SDG + R T +K A WSP + + S
Sbjct: 69 PRWSPDGSRLAFLSDRDGVTQLYVMPSDGGEPERITDLKHGVA-DPVWSPDGAWLAFVSK 127
Query: 392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451
GP +RA + +D R D K++ + +G F
Sbjct: 128 VGPEGPVQRAD----------ETEEDRKRAAQRSDTKVIRSLKY------KLDGEGFFDD 171
Query: 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVE 511
R +++F++ A G RQ+TDG W DT P+WSP G IAF SNR +
Sbjct: 172 RR------RHIFIVPATGGT----PRQITDGDWDDTQPAWSPDGRAIAFVSNRTDDRERN 221
Query: 512 AFSLYVIKP-DGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV 570
FS I P DG RRI + +G N FS DG+W+ + N P+
Sbjct: 222 TFSDIWIAPLDGGEPRRITPS--DGV-------YNSPAFSPDGDWIAYVGN-------PI 265
Query: 571 SWPNQFQPYGDLYVVKLDGSGLRRLT 596
P L+V G R LT
Sbjct: 266 VEPYGPTTLTGLWVAPTTGGEARNLT 291
Score = 45.4 bits (106), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 18/126 (14%)
Query: 441 PSCSPDGK---FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497
P +PDG+ ++V G + + VN + +G R T G DT P WSP G
Sbjct: 19 PQIAPDGRRVAYVVTEIDLEGKRYRSAIWVVNADGSGRTR-FTAGTHKDTSPRWSPDGSR 77
Query: 498 IAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL 557
+AF S+R D V LYV+ DG RI D+ + + +S DG WL
Sbjct: 78 LAFLSDR---DGVT--QLYVMPSDGGEPERIT--------DL-KHGVADPVWSPDGAWLA 123
Query: 558 FTANLG 563
F + +G
Sbjct: 124 FVSKVG 129
>gi|260576644|ref|ZP_05844631.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacter sp.
SW2]
gi|259021129|gb|EEW24438.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacter sp.
SW2]
Length = 445
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 432 KEETGNNAF-PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS 490
+E+ G F P +PDG+ +VF R G+ +++ +D +G + QLTD P I+T PS
Sbjct: 251 EEQPGTMTFAPRFAPDGRTVVFSLERGGNTDIYTVDTQSGTLS----QLTDAPSIETAPS 306
Query: 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS 550
+SP G I F S+R LYV+ G RRI G+G R +S
Sbjct: 307 YSPDGSKIVFESDRSGTQQ-----LYVMSAGGGEPRRIS----NGAG-----RYGTPVWS 352
Query: 551 ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPG 610
G+++ FT Q + + V+ DGS + LT + + G P W P
Sbjct: 353 PRGDYIAFT--------------KQNEGRFHIGVMLTDGSEEKLLTASFLDEG-PTWAPN 397
Query: 611 NQLDL 615
++ +
Sbjct: 398 GRVIM 402
>gi|418298598|ref|ZP_12910436.1| translocation protein TolB [Agrobacterium tumefaciens CCNWGS0286]
gi|355536511|gb|EHH05784.1| translocation protein TolB [Agrobacterium tumefaciens CCNWGS0286]
Length = 435
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + +LT+ IDT PS+SP G +AF
Sbjct: 252 PRFSPDGQKVIMSLQQDGNANIYTMDLRSRT----TTRLTNTSAIDTAPSYSPDGQRVAF 307
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGSG +R+ +GS + +S G+ + FT
Sbjct: 308 ESDRGGRQQI-----YVMNADGSGQQRVSFG--DGS-------YSTPVWSPRGDLIAFTK 353
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT +G+ N P W P ++
Sbjct: 354 QSGGKFS--------------IGVMKTDGSGERILT-SGFHNEGPTWAPNGRV 391
>gi|83772135|dbj|BAE62265.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 437
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 105/250 (42%), Gaps = 39/250 (15%)
Query: 375 AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNN--REEIPCDVKILTK 432
AF +SWS + Y G F + RA+ V + D S+ N IP
Sbjct: 216 AFQSSWSSDGNWLTY-GVGYWF-AGRASNGGWIVCSKADGSEAMNLTTSAIPLSAG---G 270
Query: 433 EETGNNAFPSCSPDGKFLVFR-------SGRSGHKNLFVL--DAVNGEFNGDIRQLTDGP 483
T N FPS PDG +VFR G + L +L D V + LT+
Sbjct: 271 NNTLNTGFPSFLPDGTKIVFRVWGADAEDGDTSQLGLRILHLDQVTANGTYPVTVLTN-- 328
Query: 484 WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRER 543
W DT+PS+SP G I F+ R + N E + I PDGS L+ + + +
Sbjct: 329 WWDTLPSFSPDGTKIVFT-RRVSGSNYE---VCTIAPDGSDLQVLTSSEANDA------- 377
Query: 544 INHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENG 603
H + GE+ +E + N FQPYG + ++ DG R LT + +E+
Sbjct: 378 --HAIMYSTGEY--------GFQSECALYDNTFQPYGQINIMDADGGNKRALTNSLWEDS 427
Query: 604 TPAWHPGNQL 613
PA+ PG L
Sbjct: 428 MPAYVPGEFL 437
>gi|418406040|ref|ZP_12979360.1| translocation protein TolB [Agrobacterium tumefaciens 5A]
gi|358007953|gb|EHK00276.1| translocation protein TolB [Agrobacterium tumefaciens 5A]
Length = 435
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + +LT+ IDT PS+SP G +AF
Sbjct: 252 PRFSPDGQKVIMSLQQDGNANIYTMDLRSRT----TTRLTNTSAIDTAPSFSPDGQRVAF 307
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGSG +RI +GS + +S G+ + FT
Sbjct: 308 ESDRGGRQQI-----YVMNADGSGQQRISFG--DGS-------YSTPVWSPRGDLIAFTK 353
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT +G+ N P W P ++
Sbjct: 354 QSGGKFS--------------IGVMKTDGSGERILT-SGFHNEGPTWAPNGRV 391
>gi|365891497|ref|ZP_09429910.1| Protein tolB precursor [Bradyrhizobium sp. STM 3809]
gi|365332539|emb|CCE02441.1| Protein tolB precursor [Bradyrhizobium sp. STM 3809]
Length = 376
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NLFV+D + +LTD P IDT P +SP G I F
Sbjct: 193 PRFSPDGQRIILSLQQGGNSNLFVMDLRSRS----TTRLTDTPAIDTSPCYSPDGSQICF 248
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ +G +RI EGS + +S G+++ FT
Sbjct: 249 ESDRGGKPQI-----YVMSANGGNAQRISFG--EGS-------YSTPVWSPRGDYIAFTK 294
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G A + ++K DGSG R LT G+ N P + P ++
Sbjct: 295 QGGGQFA--------------IGIMKTDGSGERILT-AGFHNEGPTFSPNGRV 332
>gi|332716443|ref|YP_004443909.1| protein tolB [Agrobacterium sp. H13-3]
gi|325063128|gb|ADY66818.1| protein tolB precursor [Agrobacterium sp. H13-3]
Length = 443
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + +LT+ IDT PS+SP G +AF
Sbjct: 260 PRFSPDGQKVIMSLQQDGNANIYTMDLRSRT----TTRLTNTSAIDTAPSFSPDGQRVAF 315
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGSG +RI +GS + +S G+ + FT
Sbjct: 316 ESDRGGRQQI-----YVMNADGSGQQRISFG--DGS-------YSTPVWSPRGDLIAFTK 361
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT +G+ N P W P ++
Sbjct: 362 QSGGKFS--------------IGVMKTDGSGERILT-SGFHNEGPTWAPNGRV 399
>gi|357976533|ref|ZP_09140504.1| translocation protein TolB [Sphingomonas sp. KC8]
Length = 440
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 34/175 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+F+VF +G+ +++ + A G +LT P IDT S+SP G I F
Sbjct: 258 PRFSPDGRFIVFSMAVNGNTDIYRVPASGGAAT----RLTTSPGIDTAASYSPDGSRIVF 313
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGSG +RI GSG R +S G+ + FT
Sbjct: 314 ESDRGGTQQI-----YVMSADGSGQQRISF----GSG-----RYATPVWSPKGDLIAFTK 359
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDL 615
G + ++ DGSG + LT N +++ P+W P ++ +
Sbjct: 360 IGGGFR---------------IGIMAPDGSGEKTLT-NAWQDEGPSWSPNGRVVM 398
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 408 VSFQLDPSDDNNREEIPCDVKILTKEET--GNNAFPSCSPDGKFLVFRSGRSGHKNLFVL 465
+ F + + + + +P T+ T G + S SPDG +VF S R G + ++V+
Sbjct: 267 IVFSMAVNGNTDIYRVPASGGAATRLTTSPGIDTAASYSPDGSRIVFESDRGGTQQIYVM 326
Query: 466 DAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL 525
A + +G R ++ G P WSPKGDLIAF+ F + ++ PDGSG
Sbjct: 327 SA---DGSGQQR-ISFGSGRYATPVWSPKGDLIAFTKIGGG------FRIGIMAPDGSGE 376
Query: 526 RRI 528
+ +
Sbjct: 377 KTL 379
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 26/167 (15%)
Query: 335 PSFSPDGGLIVFNHDFELNAGI-KIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTG 393
P FSPDG IVF+ N I ++ S G+ S+SP ++
Sbjct: 258 PRFSPDGRFIVFSMAVNGNTDIYRVPASGGAATRLTTSPGIDTAASYSPDGSRIV----- 312
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453
F+S+R Q + +D + ++ I +G A P SP G + F
Sbjct: 313 --FESDRGGTQ----QIYVMSADGSGQQRISFG--------SGRYATPVWSPKGDLIAFT 358
Query: 454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
G + + +GE + LT+ W D PSWSP G ++ F
Sbjct: 359 KIGGGFRIGIMAPDGSGE-----KTLTNA-WQDEGPSWSPNGRVVMF 399
>gi|358374479|dbj|GAA91071.1| tat pathway signal sequence domain-containing protein [Aspergillus
kawachii IFO 4308]
Length = 682
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 38/196 (19%)
Query: 356 IKIAKSDGSKRWTLIKDRTA--FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD 413
+ IA+ DGS L+ T F SWSP KHV +TS + I RV+
Sbjct: 53 LYIAEPDGSNEKLLLGSNTVYDFRASWSPDAKHVYFTSE----RRGDGQADIYRVAINGT 108
Query: 414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
++ EE+ G + S SPDGK L F + R + +L +
Sbjct: 109 STEGAEIEEVAL--------SPGVDDSASISPDGKMLAFATSRYNQTSQIMLMVLE---T 157
Query: 474 GDIRQLTDGPWIDTM-----------PSWSPKGDLIAFSSNRHNP----------DNVEA 512
G ++ LT P I P+WSP G+ I F+S+R+ P ++ +
Sbjct: 158 GSLKNLTLIPGISEAANSSLPNGYFKPTWSPDGEWIVFTSDRNTPWRGHSDGSGWEHTQE 217
Query: 513 FSLYVIKPDGSGLRRI 528
S+Y +P+G+ R +
Sbjct: 218 LSIYAARPNGTDFRLV 233
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 95/197 (48%), Gaps = 26/197 (13%)
Query: 427 VKILTKEETGNNAFPSCSPDGKFLVFRS-------GRS-GHKNLFVLDAVNGEFNGDIRQ 478
V +L N FPS + DG +VFR+ G + G L ++D + + + Q
Sbjct: 498 VTLLAGNNITNYGFPSYNHDGTQVVFRTWPGTASNGTTIGTTGLAIVDLPSRQ----VTQ 553
Query: 479 LTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV-EAFSLYVIKPDGSGLRRIHVAGPEGSG 537
LT W D +P++SP G I F + R N DN+ + + ++ + PDGS L ++ P +
Sbjct: 554 LTT-EW-DNLPAFSPDGKKILF-TRRTNLDNIGDNYDIFTMNPDGSELTKLT---PSIAS 607
Query: 538 DVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW 597
D H ++ DG L TA G P+ + + QPY + +++ DGS L+
Sbjct: 608 DA------HAVWTQDGRILYSTAMFGFQQEAPL-YDDSMQPYAIIVLMEADGSNKTVLSN 660
Query: 598 NGYENGTPAWHPGNQLD 614
+ +E+ P + P + ++
Sbjct: 661 SLWEDAMPMFAPAHVME 677
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 103/231 (44%), Gaps = 23/231 (9%)
Query: 428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLD-AVNGEFN--GDIRQLTDGPW 484
K+L T + S SPD K + F S R G + A+NG +I ++ P
Sbjct: 64 KLLLGSNTVYDFRASWSPDAKHVYFTSERRGDGQADIYRVAINGTSTEGAEIEEVALSPG 123
Query: 485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERI 544
+D S SP G ++AF+++R+N + + ++ + L+ + + P S +
Sbjct: 124 VDDSASISPDGKMLAFATSRYN----QTSQIMLMVLETGSLKNLTLI-PGISEAANSSLP 178
Query: 545 NHV---CFSADGEWLLFTANLGA---VMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW- 597
N +S DGEW++FT++ ++ W + + +Y + +G+ R ++
Sbjct: 179 NGYFKPTWSPDGEWIVFTSDRNTPWRGHSDGSGWEHTQEL--SIYAARPNGTDFRLVSSR 236
Query: 598 NGYENGTPAWHP-GNQLDLGKLRLEDDIGDKLR-----GQFDEPLWISCDF 642
+ Y G+P + P G +L ++ ED +L+ G + +S DF
Sbjct: 237 SNYTQGSPRFSPNGKRLVFYEMLTEDTYNGRLQPELLEGSYLNTSIVSIDF 287
>gi|260912913|ref|ZP_05919398.1| tol-Pal system beta propeller repeat protein TolB [Pasteurella
dagmatis ATCC 43325]
gi|260632903|gb|EEX51069.1| tol-Pal system beta propeller repeat protein TolB [Pasteurella
dagmatis ATCC 43325]
Length = 432
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G+N P+ SPDG L F S + G N++V++ +G+ I QLT G +T PSWSP G
Sbjct: 249 GHNGAPAFSPDGSRLAFASSQDGVLNIYVMNLGSGQ----IAQLTRGAGNNTEPSWSPDG 304
Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD 552
I F+S+R V Y + G G + G SG + + + S D
Sbjct: 305 QTIVFTSDRSGSPQV-----YQMSATGGGASLVSAGGRSYSGQITADGSTLIMISGD 356
>gi|399068467|ref|ZP_10749015.1| tol-pal system beta propeller repeat protein TolB [Caulobacter sp.
AP07]
gi|398045684|gb|EJL38381.1| tol-pal system beta propeller repeat protein TolB [Caulobacter sp.
AP07]
Length = 435
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 77/173 (44%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG + F + G+ +++VLD + R TD P IDT PS+SP G I F
Sbjct: 253 PRFSPDGTKVAFSVEKGGNSDIYVLDLRS---RASTRITTD-PAIDTSPSFSPDGSKIVF 308
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+S+R LYV+ DGSG+RRI G R +S G+++ FT
Sbjct: 309 NSDRGGQAQ-----LYVMNSDGSGVRRISYGG---------GRYTTPVWSPRGDFVAFTK 354
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + V++ DG G RL Y + P W P ++
Sbjct: 355 QTG----------GQFH----IGVMRPDG-GDERLLTTSYLDEGPTWAPNGRV 392
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 81/218 (37%), Gaps = 62/218 (28%)
Query: 428 KILTKEETGNNAFPSCSPDGKFLV-------------FRSGRSGHKNLFVLDAVNGEFNG 474
K+ ++ G N PS DG ++V + + R ++++L+ G
Sbjct: 185 KLAIMDQDGAN--PSYITDGSYIVMTPRFSATSQEITYMALRPTGSSIYLLNLQTG---- 238
Query: 475 DIRQLTDG--PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
R T G P + P +SP G +AFS + ++ YV+ RI
Sbjct: 239 --RTETVGKFPGMVFAPRFSPDGTKVAFSVEKGGNSDI-----YVLDLRSRASTRITT-- 289
Query: 533 PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL 592
D FS DG ++F ++ G LYV+ DGSG+
Sbjct: 290 -------DPAIDTSPSFSPDGSKIVFNSDRGG--------------QAQLYVMNSDGSGV 328
Query: 593 RRLTWNGYENGTPAWHP-----------GNQLDLGKLR 619
RR+++ G TP W P G Q +G +R
Sbjct: 329 RRISYGGGRYTTPVWSPRGDFVAFTKQTGGQFHIGVMR 366
>gi|227823308|ref|YP_002827280.1| translocation protein TolB [Sinorhizobium fredii NGR234]
gi|227342309|gb|ACP26527.1| TolB protein precursor [Sinorhizobium fredii NGR234]
Length = 457
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 36/171 (21%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR-QLTDGPWIDTMPSWSPKGDLIA 499
PS SPDG +VF S R G + L+V+ A + +G R DG + + P WSP+GDLIA
Sbjct: 318 PSYSPDGARIVFESDRGGKQQLYVMGA---DGSGQTRISFGDGSY--STPVWSPRGDLIA 372
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL-F 558
F+ FS+ V+KPDGSG RI G G ++ +G L+ F
Sbjct: 373 FTKQSGG-----KFSIGVMKPDGSG-ERILTTGFHNEGP---------TWAPNGRVLMFF 417
Query: 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
N GA + LY + L G +++ G+ + PAW P
Sbjct: 418 RQNAGAGGPQ-------------LYSIDLTGYNEQQIQTQGFAS-DPAWSP 454
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 73/173 (42%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + IDT PS+SP G I F
Sbjct: 274 PRFSPDGQRVIMSLQQEGNANIYTMDLRSRTTTRLTNTNA----IDTSPSYSPDGARIVF 329
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LYV+ DGSG RI +GS + +S G+ + FT
Sbjct: 330 ESDRGGKQQ-----LYVMGADGSGQTRISFG--DGS-------YSTPVWSPRGDLIAFTK 375
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT G+ N P W P ++
Sbjct: 376 QSGGKFS--------------IGVMKPDGSGERILT-TGFHNEGPTWAPNGRV 413
>gi|56551061|ref|YP_161900.1| translocation protein TolB [Zymomonas mobilis subsp. mobilis ZM4]
gi|260753278|ref|YP_003226171.1| translocation protein TolB [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|384411598|ref|YP_005620963.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Zymomonas mobilis subsp. mobilis ATCC 10988]
gi|397676915|ref|YP_006518453.1| protein tolB [Zymomonas mobilis subsp. mobilis ATCC 29191]
gi|67461903|sp|Q5NR65.1|TOLB_ZYMMO RecName: Full=Protein TolB; Flags: Precursor
gi|56542635|gb|AAV88789.1| Tol-Pal system beta propeller repeat protein TolB [Zymomonas
mobilis subsp. mobilis ZM4]
gi|258552641|gb|ACV75587.1| Tol-Pal system beta propeller repeat protein TolB [Zymomonas
mobilis subsp. mobilis NCIMB 11163]
gi|335931972|gb|AEH62512.1| Tol-Pal system beta propeller repeat protein TolB [Zymomonas
mobilis subsp. mobilis ATCC 10988]
gi|395397604|gb|AFN56931.1| Protein tolB [Zymomonas mobilis subsp. mobilis ATCC 29191]
Length = 458
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 79/173 (45%), Gaps = 34/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDGK +VF +G+ +++ + G+ +LT P IDT PS+SP G I F
Sbjct: 276 PRFSPDGKTIVFSMSVAGNTDIYKVPVSGGQAT----RLTTSPGIDTAPSFSPDGSKIVF 331
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + Y++ DGS RI GSG R +S G+ + FT
Sbjct: 332 ESDRSGSQQI-----YIMNADGSNQNRISF----GSG-----RYATPVWSPRGDLIAFTK 377
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + V+K DGSG + LT NG+++ P+W P ++
Sbjct: 378 LGGGF---------------HVGVMKTDGSGEQILT-NGWQDEGPSWSPNGRV 414
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 114/290 (39%), Gaps = 46/290 (15%)
Query: 252 HDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQST 311
H KRLA+ + + + L P F + N + + Y + G S
Sbjct: 204 HRLKRLAIMDQDGANHRFLTNGQSMVLTPRF-------APNQQTVTYLSYVGNSPR---- 252
Query: 312 IPHLEPVASPVKELRMLRLNGSF-PSFSPDGGLIVFNHDFELNAGI-KIAKSDGSKRWTL 369
++ + S L + + N +F P FSPDG IVF+ N I K+ S G
Sbjct: 253 -IYVYTLGSGHVRLVVNKPNTTFAPRFSPDGKTIVFSMSVAGNTDIYKVPVSGGQATRLT 311
Query: 370 IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI 429
S+SP ++ F+S+R+ Q + +D +N+ I
Sbjct: 312 TSPGIDTAPSFSPDGSKIV-------FESDRSGSQ----QIYIMNADGSNQNRISFG--- 357
Query: 430 LTKEETGNNAFPSCSPDGKFLVF-RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTM 488
+G A P SP G + F + G H + D +GE + LT+G W D
Sbjct: 358 -----SGRYATPVWSPRGDLIAFTKLGGGFHVGVMKTDG-SGE-----QILTNG-WQDEG 405
Query: 489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGD 538
PSWSP G +IAF N + E +S+ D +G+ H+ P D
Sbjct: 406 PSWSPNGRVIAFFRTARNSGHTELWSV-----DLTGVNERHIPTPLDGSD 450
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 67/165 (40%), Gaps = 18/165 (10%)
Query: 37 HR-LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDR 95
HR LT+G S+ +F Q QT+ ++S SPRIY GS L+ + P + F R
Sbjct: 219 HRFLTNGQSMVLTPRFAPNQ-QTVTYLSYVGNSPRIYVYTLGSGHVRLVVNKPNTTFAPR 277
Query: 96 PVARNNKLFF-ISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFI 154
+ F +S D +Y + + TRLT +D +PS S G I
Sbjct: 278 FSPDGKTIVFSMSVAGNTD--------IYKVPVSGGQATRLTTSPGIDTAPSFSPDGSKI 329
Query: 155 AVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWS 199
S R + + +N D S+ N+ R P WS
Sbjct: 330 VFES--DRSGSQQIYIMNAD-----GSNQNRISFGSGRYATPVWS 367
>gi|383458213|ref|YP_005372202.1| TolB protein [Corallococcus coralloides DSM 2259]
gi|380734508|gb|AFE10510.1| TolB protein [Corallococcus coralloides DSM 2259]
Length = 429
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 97/228 (42%), Gaps = 36/228 (15%)
Query: 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTG 393
P+ SP G + F + I + G + + + + A ++SP K + Y
Sbjct: 199 LPTLSPSG-QVAFTSYRKNRPDIYVQSPGGEAKPLVTEGQMATGVAYSPDGKRIAYA--- 254
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453
+ + E A + +A S D K +T G N P+ SPDGK + F
Sbjct: 255 -LAEGESAQIYVA--------SADG------SGAKAITDTPYGLNTSPTWSPDGKRIAFV 299
Query: 454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF 513
S R G ++V+ N + +G +++LT + P WSP+GDLIAF++ D AF
Sbjct: 300 SNRGGSPQVYVM---NADGSG-VKRLTFQGNYNQTPDWSPRGDLIAFTAR----DERNAF 351
Query: 514 SLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN 561
L+ + D + R+ D+ FS +G ++F+ N
Sbjct: 352 DLFTVNVDTGKVTRLT---------QDQGNNEEPTFSPNGRLIIFSTN 390
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 71/173 (41%), Gaps = 32/173 (18%)
Query: 442 SCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW-IDTMPSWSPKGDLIAF 500
+ SPDGK + + ++V A + +TD P+ ++T P+WSP G IAF
Sbjct: 243 AYSPDGKRIAYALAEGESAQIYVASADGS----GAKAITDTPYGLNTSPTWSPDGKRIAF 298
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
SNR V YV+ DGSG++R+ G R + + F+A E F
Sbjct: 299 VSNRGGSPQV-----YVMNADGSGVKRLTFQGNYNQTPDWSPRGDLIAFTARDERNAF-- 351
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
DL+ V +D + RLT + N P + P +L
Sbjct: 352 --------------------DLFTVNVDTGKVTRLTQDQGNNEEPTFSPNGRL 384
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 35/189 (18%)
Query: 425 CDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW 484
+ + LTK G + P+ SP G+ + F S R +++V G+ + L
Sbjct: 186 MNAQALTK--GGTHILPTLSPSGQ-VAFTSYRKNRPDIYVQSP-----GGEAKPLVTEGQ 237
Query: 485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERI 544
+ T ++SP G IA++ E+ +YV DGSG + I D
Sbjct: 238 MATGVAYSPDGKRIAYALAEG-----ESAQIYVASADGSGAKAIT--------DTPYGLN 284
Query: 545 NHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGT 604
+S DG+ + F +N G +YV+ DGSG++RLT+ G N T
Sbjct: 285 TSPTWSPDGKRIAFVSNRGGSP--------------QVYVMNADGSGVKRLTFQGNYNQT 330
Query: 605 PAWHPGNQL 613
P W P L
Sbjct: 331 PDWSPRGDL 339
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 31/179 (17%)
Query: 318 VASPVKELRMLRLNGSFPS---FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRT 374
V SP E + L G + +SPDG I + +A I +A +DGS +
Sbjct: 222 VQSPGGEAKPLVTEGQMATGVAYSPDGKRIAYALAEGESAQIYVASADGSGAKAITDTPY 281
Query: 375 AFYNS--WSPTEKHVIYTS----TGPIFQSERATVQIARVSFQLD--------PSDD--- 417
S WSP K + + S + ++ + R++FQ + P D
Sbjct: 282 GLNTSPTWSPDGKRIAFVSNRGGSPQVYVMNADGSGVKRLTFQGNYNQTPDWSPRGDLIA 341
Query: 418 -NNREE--------IPCDVKILTK--EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVL 465
R+E + D +T+ ++ GNN P+ SP+G+ ++F + R+G +L+V+
Sbjct: 342 FTARDERNAFDLFTVNVDTGKVTRLTQDQGNNEEPTFSPNGRLIIFSTNRNGGAHLWVM 400
>gi|16127460|ref|NP_422024.1| translocation protein TolB [Caulobacter crescentus CB15]
gi|32699717|sp|Q9A3H4.1|TOLB_CAUCR RecName: Full=Protein TolB; Flags: Precursor
gi|13424914|gb|AAK25192.1| tolB protein [Caulobacter crescentus CB15]
Length = 432
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG + F R+G+ +++V+D + ++T P IDT PS+SP G I F
Sbjct: 250 PRFSPDGSKVAFSVERNGNSDIYVMDLRSRATT----RITTDPAIDTSPSFSPDGTKIVF 305
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+S+R + YV+ DGSG+RRI G R +S G+++ FT
Sbjct: 306 NSDRGGQAQI-----YVMNTDGSGVRRISYGG---------GRYTTPVWSPRGDFIAFTK 351
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G +F + V++ DG G RL Y + P W P ++
Sbjct: 352 QTGG----------EFH----IGVMRADG-GDERLLTTSYLDEGPTWAPNGRV 389
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 107/243 (44%), Gaps = 29/243 (11%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA 354
Y R GE + + + P + +K L ++ +G+ P + DG IV F
Sbjct: 153 YERLTGEKGYFDTRVAFVAESGPKLNRIKRLAIMDQDGANPQYLTDGSYIVMTPRF---- 208
Query: 355 GIKIAKSDGSKRWTLIKDR----TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410
S S+ T + R + + + + + + G +F + R + ++V+F
Sbjct: 209 ------SSTSQELTYMALRPTGSSIYLLNLETSRQETVGKFPGMVF-APRFSPDGSKVAF 261
Query: 411 QLDPSDDNNREEIPCDVKILTKEET--GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV 468
++ + +++ + + T+ T + PS SPDG +VF S R G ++V+
Sbjct: 262 SVERNGNSDIYVMDLRSRATTRITTDPAIDTSPSFSPDGTKIVFNSDRGGQAQIYVM--- 318
Query: 469 NGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
N + +G +R+++ G T P WSP+GD IAF+ F + V++ DG R +
Sbjct: 319 NTDGSG-VRRISYGGGRYTTPVWSPRGDFIAFTKQTGG-----EFHIGVMRADGGDERLL 372
Query: 529 HVA 531
+
Sbjct: 373 TTS 375
Score = 42.4 bits (98), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 54/135 (40%), Gaps = 30/135 (22%)
Query: 477 RQLTDG--PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
RQ T G P + P +SP G +AFS R+ ++ YV+ RI
Sbjct: 236 RQETVGKFPGMVFAPRFSPDGSKVAFSVERNGNSDI-----YVMDLRSRATTRITT---- 286
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR 594
D FS DG ++F ++ G +YV+ DGSG+RR
Sbjct: 287 -----DPAIDTSPSFSPDGTKIVFNSDRGG--------------QAQIYVMNTDGSGVRR 327
Query: 595 LTWNGYENGTPAWHP 609
+++ G TP W P
Sbjct: 328 ISYGGGRYTTPVWSP 342
>gi|421498679|ref|ZP_15945771.1| translocation protein TolB [Aeromonas media WS]
gi|407182340|gb|EKE56305.1| translocation protein TolB [Aeromonas media WS]
Length = 437
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 72/328 (21%), Positives = 126/328 (38%), Gaps = 61/328 (18%)
Query: 310 STIP--HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW 367
+TIP + A + ++ RL G +F + + ++I+ DG
Sbjct: 140 ATIPGAQMRQFAHRISDIVYERLTGERGAFLTRLAYVSVQQGTQFPYQLRISDYDGYNEK 199
Query: 368 TLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD 426
TL++ R + +WSP + Y S F+++++ + + ++I
Sbjct: 200 TLLRSREPLMSPAWSPDGSKLAYVS----FENQKSEIYV---------------QDIYTQ 240
Query: 427 VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID 486
+ L G N P SPDG+ L + G +L+V+D + + ++T+ ID
Sbjct: 241 QRSLITSFRGINGAPEWSPDGRRLAIVLSKDGQPDLYVVDVASKQLT----RVTNNRTID 296
Query: 487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYV-----------------IKPDGSGLRRIH 529
T PSW P G + F+S R + + +L I PDG + +
Sbjct: 297 TEPSWMPDGQTLLFTSERGGKPQIYSVNLATGVTRRMTWEGDSNQGASITPDGKSM--VV 354
Query: 530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQ--------FQPYGD 581
V +G + R+ + + G L+ T + A+ P PN +Q
Sbjct: 355 VTRVQGQYRIARQDMEN------GAMLVLTQS--ALDESPSVAPNGSMIIYATIYQGRKS 406
Query: 582 LYVVKLDGSGLRRLTWNGYENGTPAWHP 609
L +V DG L + E PAW P
Sbjct: 407 LALVSTDGRFKAVLPTSSGEIRAPAWSP 434
>gi|378827377|ref|YP_005190109.1| TolB protein [Sinorhizobium fredii HH103]
gi|365180429|emb|CCE97284.1| TolB protein precursor [Sinorhizobium fredii HH103]
Length = 456
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 36/171 (21%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR-QLTDGPWIDTMPSWSPKGDLIA 499
PS SPDG +VF S R G + L+V+ A + +G R DG + + P WSP+GDLIA
Sbjct: 317 PSYSPDGGRIVFESDRGGKQQLYVMGA---DGSGQTRISFGDGSY--STPVWSPRGDLIA 371
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL-F 558
F+ FS+ V+KPDGSG RI G G ++ +G L+ F
Sbjct: 372 FTKQSGG-----KFSIGVMKPDGSG-ERILTTGFHNEGP---------TWAPNGRVLMFF 416
Query: 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
N GA + LY + L G +++ G+ + PAW P
Sbjct: 417 RQNAGAGGPQ-------------LYSIDLTGYNEQQIQTQGFAS-DPAWSP 453
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 73/173 (42%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + IDT PS+SP G I F
Sbjct: 273 PRFSPDGQRVIMSLQQEGNANIYTMDLRSRTTTRLTNTNA----IDTSPSYSPDGGRIVF 328
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LYV+ DGSG RI +GS + +S G+ + FT
Sbjct: 329 ESDRGGKQQ-----LYVMGADGSGQTRISFG--DGS-------YSTPVWSPRGDLIAFTK 374
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT G+ N P W P ++
Sbjct: 375 QSGGKFS--------------IGVMKPDGSGERILT-TGFHNEGPTWAPNGRV 412
>gi|148284009|ref|YP_001248099.1| translocation protein TolB [Orientia tsutsugamushi str. Boryong]
gi|226705886|sp|A5CBX4.1|TOLB_ORITB RecName: Full=Protein TolB; Flags: Precursor
gi|146739448|emb|CAM79084.1| protein precursor [Orientia tsutsugamushi str. Boryong]
Length = 453
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 65/118 (55%), Gaps = 18/118 (15%)
Query: 427 VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID 486
+K LTK ++ N + PS SPDG + F S RSG +++++ + G+I++LT P
Sbjct: 297 IKQLTKGQSINTS-PSYSPDGSKIAFVSDRSGSTQIYIMN----DQGGNIKRLTSQPGAY 351
Query: 487 TMPSWSPKGDLIAFSSNRHNPDNVEA--FSLYVIKPDGSGLRRIH----VAGPEGSGD 538
T P+WSP + IAF+ +EA FS+ VIK DGS R I V GP + D
Sbjct: 352 TTPAWSPTNNYIAFTK-------IEAGEFSIGVIKLDGSNKRIIATKYLVEGPSWAPD 402
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 74/177 (41%), Gaps = 48/177 (27%)
Query: 441 PSCSPDG-KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
P SPDG K LV S +++ ++ + G+ I+QLT G I+T PS+SP G IA
Sbjct: 265 PRFSPDGNKILVSNSSTKNVTHIYEINLLTGK----IKQLTKGQSINTSPSYSPDGSKIA 320
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559
F S+R SG +I++ +G G++ R T
Sbjct: 321 FVSDR------------------SGSTQIYIMNDQG-GNIKR----------------LT 345
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLY-------VVKLDGSGLRRLTWNGYENGTPAWHP 609
+ GA S N + + + V+KLDGS +R+ Y P+W P
Sbjct: 346 SQPGAYTTPAWSPTNNYIAFTKIEAGEFSIGVIKLDGSN-KRIIATKYLVEGPSWAP 401
>gi|389743571|gb|EIM84755.1| tricorn protease N-terminal domain-containing protein [Stereum
hirsutum FP-91666 SS1]
Length = 671
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 20/180 (11%)
Query: 435 TGNNAFPSCSPDGKFLVFRSG--RSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
T N+ FPS SPDG LV+RS ++G + L ++D +I LT G W D +P W
Sbjct: 502 TYNDGFPSYSPDGSKLVYRSWDVQNGPRGLRIMDLETR----NITTLTTG-W-DNLPHWQ 555
Query: 493 PKGDLIAFSSNRHNPDNVE---AFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCF 549
P GDLI F+ P+ E + + I DG+ + + + + H +
Sbjct: 556 PGGDLILFTRRTSVPNENEYEDNYDVCTINSDGTNYKVLTTSLANDA---------HAVW 606
Query: 550 SADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ DG +L++ E + + FQ YG + + DG+ LT +E+ P + P
Sbjct: 607 NGDGTKILYSTGEFGFQDEAAIYDDTFQQYGQIMSMDYDGANKVVLTNGIWEDSMPLYVP 666
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 43/190 (22%)
Query: 356 IKIAKSDGSKRWTLIKDRTAF--YNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD 413
+ IA +DG+ L+ + ++F + WSP + +I+TS ++ + RV
Sbjct: 71 LYIANADGTNETLLLGNSSSFDYHAQWSPDGQWIIFTSE----RNGDGNPDLWRVH---- 122
Query: 414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHK-NLFVLDAVNG-- 470
D E++ + T S SP+G + F+S +K N+++LD G
Sbjct: 123 -PDGTGLEQVIATSAVETA--------ASVSPNGTIVAFQSTAVNYKSNIWLLDLTTGSS 173
Query: 471 -------EFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP----------DNVEAF 513
E G+ L DG + P+WSP G+ I FSS++ ++ +
Sbjct: 174 WNITNTTEIAGN-SSLPDGHF---RPAWSPDGEWIVFSSDKDTLWRGHGNGSGWEHTQEL 229
Query: 514 SLYVIKPDGS 523
S+Y I+P+GS
Sbjct: 230 SIYAIRPNGS 239
>gi|221236273|ref|YP_002518710.1| translocation protein TolB [Caulobacter crescentus NA1000]
gi|220965446|gb|ACL96802.1| TolB protein [Caulobacter crescentus NA1000]
Length = 443
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG + F R+G+ +++V+D + ++T P IDT PS+SP G I F
Sbjct: 261 PRFSPDGSKVAFSVERNGNSDIYVMDLRSRATT----RITTDPAIDTSPSFSPDGTKIVF 316
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+S+R + YV+ DGSG+RRI G R +S G+++ FT
Sbjct: 317 NSDRGGQAQI-----YVMNTDGSGVRRISYGG---------GRYTTPVWSPRGDFIAFTK 362
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G +F + V++ DG G RL Y + P W P ++
Sbjct: 363 QTGG----------EFH----IGVMRADG-GDERLLTTSYLDEGPTWAPNGRV 400
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 107/243 (44%), Gaps = 29/243 (11%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA 354
Y R GE + + + P + +K L ++ +G+ P + DG IV F
Sbjct: 164 YERLTGEKGYFDTRVAFVAESGPKLNRIKRLAIMDQDGANPQYLTDGSYIVMTPRF---- 219
Query: 355 GIKIAKSDGSKRWTLIKDR----TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410
S S+ T + R + + + + + + G +F + R + ++V+F
Sbjct: 220 ------SSTSQELTYMALRPTGSSIYLLNLETSRQETVGKFPGMVF-APRFSPDGSKVAF 272
Query: 411 QLDPSDDNNREEIPCDVKILTKEET--GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV 468
++ + +++ + + T+ T + PS SPDG +VF S R G ++V+
Sbjct: 273 SVERNGNSDIYVMDLRSRATTRITTDPAIDTSPSFSPDGTKIVFNSDRGGQAQIYVM--- 329
Query: 469 NGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
N + +G +R+++ G T P WSP+GD IAF+ F + V++ DG R +
Sbjct: 330 NTDGSG-VRRISYGGGRYTTPVWSPRGDFIAFTKQTGG-----EFHIGVMRADGGDERLL 383
Query: 529 HVA 531
+
Sbjct: 384 TTS 386
Score = 42.4 bits (98), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 54/135 (40%), Gaps = 30/135 (22%)
Query: 477 RQLTDG--PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
RQ T G P + P +SP G +AFS R+ ++ YV+ RI
Sbjct: 247 RQETVGKFPGMVFAPRFSPDGSKVAFSVERNGNSDI-----YVMDLRSRATTRITT---- 297
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR 594
D FS DG ++F ++ G +YV+ DGSG+RR
Sbjct: 298 -----DPAIDTSPSFSPDGTKIVFNSDRGG--------------QAQIYVMNTDGSGVRR 338
Query: 595 LTWNGYENGTPAWHP 609
+++ G TP W P
Sbjct: 339 ISYGGGRYTTPVWSP 353
>gi|148555048|ref|YP_001262630.1| translocation protein TolB [Sphingomonas wittichii RW1]
gi|166229992|sp|A5V876.1|TOLB_SPHWW RecName: Full=Protein TolB; Flags: Precursor
gi|148500238|gb|ABQ68492.1| Tol-Pal system beta propeller repeat, TolB [Sphingomonas wittichii
RW1]
Length = 439
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 121/302 (40%), Gaps = 59/302 (19%)
Query: 318 VASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIK---IAKSDGSKRWTLIKDRT 374
A +L RL G P F D ++ + IK I DG+ L +T
Sbjct: 151 AAHKCADLVYTRLTGEGPYF--DSRVVYVSETGPKTNRIKRLAIMDQDGANHRFLTNGQT 208
Query: 375 AFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE 433
++P ++ + Y S + + RA V + +I + L +
Sbjct: 209 IVLTPRFAPNQQTITYMS----YTNNRARVYV---------------YDIGSGSQRLVVD 249
Query: 434 ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
+ P SPDG+ +VF G+ +++ + A G ++LT P IDT S+SP
Sbjct: 250 QPNMTFAPRFSPDGRTIVFSMAVGGNTDIYRVSAGGGT----PQRLTTSPGIDTGASYSP 305
Query: 494 KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADG 553
G I F S+R LYV+ DGS RI GSG R +S G
Sbjct: 306 DGSKIVFESDRSGTQQ-----LYVMNADGSNQNRISF----GSG-----RYGSAAWSPRG 351
Query: 554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+ + FT G ++ ++ +DGSG + LT NG+++ P+W P ++
Sbjct: 352 DLIAFTKIGGGF---------------NVGIMNIDGSGEKILT-NGWQDEGPSWSPNGRV 395
Query: 614 DL 615
+
Sbjct: 396 IM 397
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 96/233 (41%), Gaps = 24/233 (10%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA 354
Y R GE S + ++ P + +K L ++ +G+ F +G IV F N
Sbjct: 160 YTRLTGEGPYFDSRVVYVSETGPKTNRIKRLAIMDQDGANHRFLTNGQTIVLTPRFAPNQ 219
Query: 355 GIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVI---YTSTGPIFQSERATVQIARVSFQ 411
S +T + R Y+ S +++ V+ + P F + T+ S
Sbjct: 220 QTITYMS-----YTNNRARVYVYDIGSGSQRLVVDQPNMTFAPRFSPDGRTIVF---SMA 271
Query: 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471
+ + D R G + S SPDG +VF S RSG + L+V++A
Sbjct: 272 VGGNTDIYRVSAGGGTPQRLTTSPGIDTGASYSPDGSKIVFESDRSGTQQLYVMNADGSN 331
Query: 472 FNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG 524
N +++ G +WSP+GDLIAF+ F++ ++ DGSG
Sbjct: 332 QN----RISFGSGRYGSAAWSPRGDLIAFTKIGG------GFNVGIMNIDGSG 374
>gi|425063664|ref|ZP_18466789.1| tolB protein precursor [Pasteurella multocida subsp. gallicida X73]
gi|404382218|gb|EJZ78679.1| tolB protein precursor [Pasteurella multocida subsp. gallicida X73]
Length = 432
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 29/225 (12%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHV 387
+L G +F IV H ++++ DG ++ + + + +WS K +
Sbjct: 160 KLTGIRGAFRTRIAYIVQKHGGSQPYEVRVSDYDGFNQFVVNRSAQPLMSPAWSHDGKKL 219
Query: 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
Y S F+++++ + + +++ + + G+N P+ SPDG
Sbjct: 220 AYVS----FENKKSQLVV---------------QDLGSGARKVVASFNGHNGAPAFSPDG 260
Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP 507
L F S + G N++V++ +G+ I QLT G +T PSWSP G I F+S+R
Sbjct: 261 SRLAFASSKDGVLNIYVMNIGSGQ----ISQLTSGTGNNTEPSWSPDGQTIVFTSDRSGS 316
Query: 508 DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD 552
V Y + G G + G SG + + + S D
Sbjct: 317 PQV-----YQMSASGGGASLVSTGGRSYSGQMTADGSAIIMISRD 356
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 16/124 (12%)
Query: 38 RLTDGTSINFNAQFV-DGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRP 96
+LT GT N + DGQ TI F S+RSGSP++YQ L+ S + +
Sbjct: 287 QLTSGTGNNTEPSWSPDGQ--TIVFTSDRSGSPQVYQMSASGGGASLV-STGGRSYSGQM 343
Query: 97 VARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAV 156
A + + IS D I K A ST++ +S F +D SPS+S +G I
Sbjct: 344 TADGSAIIMISR----DNIVKKDLASGSTEVLSSTF--------LDESPSISPNGIMIIY 391
Query: 157 ASYE 160
+S +
Sbjct: 392 SSTQ 395
>gi|378773879|ref|YP_005176122.1| protein TolB [Pasteurella multocida 36950]
gi|386833864|ref|YP_006239178.1| TolB protein precursor, putative [Pasteurella multocida subsp.
multocida str. 3480]
gi|417853638|ref|ZP_12498997.1| translocation protein TolB [Pasteurella multocida subsp. multocida
str. Anand1_goat]
gi|425065832|ref|ZP_18468952.1| tolB protein precursor [Pasteurella multocida subsp. gallicida
P1059]
gi|338219244|gb|EGP04932.1| translocation protein TolB [Pasteurella multocida subsp. multocida
str. Anand1_goat]
gi|356596427|gb|AET15153.1| protein TolB [Pasteurella multocida 36950]
gi|385200564|gb|AFI45419.1| TolB protein precursor, putative [Pasteurella multocida subsp.
multocida str. 3480]
gi|404383327|gb|EJZ79781.1| tolB protein precursor [Pasteurella multocida subsp. gallicida
P1059]
Length = 432
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 29/225 (12%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHV 387
+L G +F IV H ++++ DG ++ + + + +WS K +
Sbjct: 160 KLTGIRGAFRTRIAYIVQKHGGSQPYEVRVSDYDGFNQFVVNRSAQPLMSPAWSHDGKKL 219
Query: 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
Y S F+++++ + + +++ + + G+N P+ SPDG
Sbjct: 220 AYVS----FENKKSQLVV---------------QDLGSGARKVVASFNGHNGAPAFSPDG 260
Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP 507
L F S + G N++V++ +G+ I QLT G +T PSWSP G I F+S+R
Sbjct: 261 SRLAFASSKDGVLNIYVMNLGSGQ----ISQLTSGTGNNTEPSWSPDGQTIVFTSDRSGS 316
Query: 508 DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD 552
V Y + G G + G SG + + + S D
Sbjct: 317 PQV-----YQMSASGGGASLVSTGGRSYSGQMTADGSAIIMISRD 356
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 16/124 (12%)
Query: 38 RLTDGTSINFNAQFV-DGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRP 96
+LT GT N + DGQ TI F S+RSGSP++YQ L+ S + +
Sbjct: 287 QLTSGTGNNTEPSWSPDGQ--TIVFTSDRSGSPQVYQMSASGGGASLV-STGGRSYSGQM 343
Query: 97 VARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAV 156
A + + IS D I K A ST++ +S F +D SPS+S +G I
Sbjct: 344 TADGSAIIMISR----DNIVKKDLASGSTEVLSSTF--------LDESPSISPNGIMIIY 391
Query: 157 ASYE 160
+S +
Sbjct: 392 SSTQ 395
>gi|383309883|ref|YP_005362693.1| translocation protein TolB [Pasteurella multocida subsp. multocida
str. HN06]
gi|380871155|gb|AFF23522.1| translocation protein TolB [Pasteurella multocida subsp. multocida
str. HN06]
Length = 432
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 29/225 (12%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHV 387
+L G +F IV H ++++ DG ++ + + + +WS K +
Sbjct: 160 KLTGIRGAFRTRIAYIVQKHGGSQPYEVRVSDYDGFNQFVVNRSAQPLMSPAWSHDGKKL 219
Query: 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
Y S F+++++ + + +++ + + G+N P+ SPDG
Sbjct: 220 AYVS----FENKKSQLVV---------------QDLGSGARKVVASFNGHNGAPAFSPDG 260
Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP 507
L F S + G N++V++ +G+ I QLT G +T PSWSP G I F+S+R
Sbjct: 261 SRLAFASSKDGVLNIYVMNLGSGQ----ISQLTSGTGNNTEPSWSPDGQTIVFTSDRSGS 316
Query: 508 DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD 552
V Y + G G + G SG + + + S D
Sbjct: 317 PQV-----YQMSASGGGASLVSTGGRSYSGQMTADGSAIIMISRD 356
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 16/124 (12%)
Query: 38 RLTDGTSINFNAQFV-DGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRP 96
+LT GT N + DGQ TI F S+RSGSP++YQ L+ S + +
Sbjct: 287 QLTSGTGNNTEPSWSPDGQ--TIVFTSDRSGSPQVYQMSASGGGASLV-STGGRSYSGQM 343
Query: 97 VARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAV 156
A + + IS D I K A ST++ +S F +D SPS+S +G I
Sbjct: 344 TADGSAIIMISR----DNIVKKDLASGSTEVLSSTF--------LDESPSISPNGIMIIY 391
Query: 157 ASYE 160
+S +
Sbjct: 392 SSTQ 395
>gi|146338269|ref|YP_001203317.1| protein tolB [Bradyrhizobium sp. ORS 278]
gi|146191075|emb|CAL75080.1| Protein tolB precursor [Bradyrhizobium sp. ORS 278]
Length = 376
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 77/173 (44%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NLFV+D + +LTD P IDT P +SP G I F
Sbjct: 193 PRFSPDGQRIILSLQQGGNSNLFVMDLRSRS----TTRLTDTPAIDTSPCYSPDGSQICF 248
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ G +RI EGS + +S G+++ FT
Sbjct: 249 ESDRGGKPQI-----YVMSASGGNAQRISFG--EGS-------YSTPVWSPRGDYIAFTK 294
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G A + ++K DGSG R LT G+ N P + P ++
Sbjct: 295 QGGGQFA--------------IGIMKTDGSGERILT-AGFHNEGPTFSPNGRV 332
>gi|15602832|ref|NP_245904.1| translocation protein TolB [Pasteurella multocida subsp. multocida
str. Pm70]
gi|32699718|sp|Q9CM71.1|TOLB_PASMU RecName: Full=Protein TolB; Flags: Precursor
gi|12721292|gb|AAK03051.1| TolB [Pasteurella multocida subsp. multocida str. Pm70]
Length = 432
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 29/225 (12%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHV 387
+L G +F IV H ++++ DG ++ + + + +WS K +
Sbjct: 160 KLTGIRGAFRTRIAYIVQKHGGSQPYEVRVSDYDGFNQFVVNRSAQPLMSPAWSHDGKKL 219
Query: 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
Y S F+++++ + + +++ + + G+N P+ SPDG
Sbjct: 220 AYVS----FENKKSQLVV---------------QDLGSGARKVVASFNGHNGAPAFSPDG 260
Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP 507
L F S + G N++V++ +G+ I QLT G +T PSWSP G I F+S+R
Sbjct: 261 SRLAFASSKDGVLNIYVMNLGSGQ----ISQLTSGTGNNTEPSWSPDGQTIVFTSDRSGS 316
Query: 508 DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD 552
V Y + G G + G SG + + + S D
Sbjct: 317 PQV-----YQMSASGGGASLVSTGGRSYSGQMTADGSAIIMISRD 356
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 12/130 (9%)
Query: 38 RLTDGTSINFNAQFV-DGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRP 96
+LT GT N + DGQ TI F S+RSGSP++YQ L+ S + +
Sbjct: 287 QLTSGTGNNTEPSWSPDGQ--TIVFTSDRSGSPQVYQMSASGGGASLV-STGGRSYSGQM 343
Query: 97 VARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFT----RLTPYGVVDYSPSVSYSGK 152
A + + IS D I K A ST++ +S F ++P G++ S GK
Sbjct: 344 TADGSAIIMISR----DNIVKKDLASGSTEVLSSTFLDENPSISPNGIMIIYSSTQGLGK 399
Query: 153 FIAVASYESR 162
+ + S + R
Sbjct: 400 VLQLVSADGR 409
>gi|421263708|ref|ZP_15714736.1| translocation protein TolB [Pasteurella multocida subsp. multocida
str. P52VAC]
gi|401689255|gb|EJS84730.1| translocation protein TolB [Pasteurella multocida subsp. multocida
str. P52VAC]
Length = 432
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 29/225 (12%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHV 387
+L G +F IV H ++++ DG ++ + + + +WS K +
Sbjct: 160 KLTGIRGAFRTRIAYIVQKHGGSQPYEVRVSDYDGFNQFVVNRSAQPLMSPAWSHDGKKL 219
Query: 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
Y S F+++++ + + +++ + + G+N P+ SPDG
Sbjct: 220 AYVS----FENKKSQLVV---------------QDLGSGARKVVASFNGHNGAPAFSPDG 260
Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP 507
L F S + G N++V++ +G+ I QLT G +T PSWSP G I F+S+R
Sbjct: 261 SRLAFASSKDGVLNIYVMNLGSGQ----ISQLTSGTGNNTEPSWSPDGQTIVFTSDRSGS 316
Query: 508 DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD 552
V Y + G G + G SG + + + S D
Sbjct: 317 PQV-----YQMSASGGGASLVSTGGRSYSGQMTADGSAIIMISRD 356
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 16/124 (12%)
Query: 38 RLTDGTSINFNAQFV-DGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRP 96
+LT GT N + DGQ TI F S+RSGSP++YQ L+ S + +
Sbjct: 287 QLTSGTGNNTEPSWSPDGQ--TIVFTSDRSGSPQVYQMSASGGGASLV-STGGRSYSGQM 343
Query: 97 VARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAV 156
A + + IS D I K A ST++ +S F +D SPS+S +G I
Sbjct: 344 TADGSAIIMISR----DNIVKKDLASGSTEVLSSTF--------LDESPSISPNGIMIIY 391
Query: 157 ASYE 160
+S +
Sbjct: 392 SSTQ 395
>gi|254461647|ref|ZP_05075063.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacterales
bacterium HTCC2083]
gi|206678236|gb|EDZ42723.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacteraceae
bacterium HTCC2083]
Length = 439
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 33/188 (17%)
Query: 428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT 487
++L ++ + P SPDG+ +V+ R G+ ++F +D +G +R LT GP I+T
Sbjct: 242 RVLESQDGSMSFAPRFSPDGRTVVYSLARGGNTDIFRMDVASGS---SVR-LTSGPAIET 297
Query: 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV 547
PS+SP G I F S+R + Y++ +G +RI + R
Sbjct: 298 APSYSPDGSRIVFESDRSGSQQI-----YIMSANGGEAKRISFG---------KGRYGTP 343
Query: 548 CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
+S G+ + FT Q + + V++ DGS R LT + + G P W
Sbjct: 344 VWSPRGDLIAFT--------------KQSKGRFHIGVMRTDGSEERLLTASFLDEG-PTW 388
Query: 608 HPGNQLDL 615
P ++ +
Sbjct: 389 SPNGRVIM 396
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 41/131 (31%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF---------------------------- 472
PS SPDG +VF S RSG + ++++ A GE
Sbjct: 299 PSYSPDGSRIVFESDRSGSQQIYIMSANGGEAKRISFGKGRYGTPVWSPRGDLIAFTKQS 358
Query: 473 -----------NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD 521
+G +L ++D P+WSP G +I F+ R + + SLY +
Sbjct: 359 KGRFHIGVMRTDGSEERLLTASFLDEGPTWSPNGRVIMFT--RETQGSAGSASLYSVDIS 416
Query: 522 GSGLRRIHVAG 532
G L+RI G
Sbjct: 417 GRNLKRIPTEG 427
>gi|334703062|ref|ZP_08518928.1| translocation protein TolB [Aeromonas caviae Ae398]
Length = 441
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 126/328 (38%), Gaps = 61/328 (18%)
Query: 310 STIP--HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW 367
+TIP + A + ++ RL G +F + + ++I+ DG
Sbjct: 144 ATIPGAQMRQFAHRISDIVYERLTGERGAFLTRLAYVSVQQGTQFPYQLRISDYDGYNEK 203
Query: 368 TLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD 426
TL++ R + +WSP + Y S F+++++ + + ++I
Sbjct: 204 TLLRSREPLMSPAWSPDGSKLAYVS----FENQKSEIYV---------------QDIYTQ 244
Query: 427 VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID 486
+ L G N P SPDG+ L + G +++V+D + + ++T+ ID
Sbjct: 245 QRSLITSFRGINGAPEWSPDGRRLAIVLSKDGQPDIYVVDVASKQLT----RVTNNRTID 300
Query: 487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYV-----------------IKPDGSGLRRIH 529
T PSW P G + F+S R + + +L I PDG + +
Sbjct: 301 TEPSWMPDGQTLLFTSERGGKPQIYSVNLATGMTRRMTWEGDSNQGASITPDGKSM--VM 358
Query: 530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQ--------FQPYGD 581
V +G + R+ + + G L+ T + A+ P PN +Q
Sbjct: 359 VTRVQGQYRIARQDMEN------GAMLVLTQS--ALDESPSVAPNGSMIIYATIYQGRKS 410
Query: 582 LYVVKLDGSGLRRLTWNGYENGTPAWHP 609
L +V DG L + E PAW P
Sbjct: 411 LALVSTDGRFKAVLPTSSGEIRAPAWSP 438
>gi|444918916|ref|ZP_21238970.1| tolB protein precursor protein [Cystobacter fuscus DSM 2262]
gi|444709199|gb|ELW50222.1| tolB protein precursor protein [Cystobacter fuscus DSM 2262]
Length = 429
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 37/228 (16%)
Query: 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTST 392
P+ PDG L ++ + + + KS G R + + A ++SP K V Y
Sbjct: 202 LPALGPDGQLGYTSYQ-QGKPDLYVRKSGGDTIRLKTNEGQMATGIAFSPDGKRVAYA-- 258
Query: 393 GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452
+ E A + +A + + + LT G N P+ SPDGK + F
Sbjct: 259 --LADDESAQIWVANANGE--------------GARQLTDTRFGINTSPAWSPDGKRIAF 302
Query: 453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA 512
S R G ++V++A +R+LT + P+WSP+GDLIAF++ D A
Sbjct: 303 VSNRGGSPQVYVMNADGSA----VRRLTFQGNYNQTPNWSPRGDLIAFTAR----DERNA 354
Query: 513 FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
F L+ + D + R+ D+ FS +G +LFT+
Sbjct: 355 FDLFTVHVDTGKISRLT---------QDQANNEEPSFSPNGRLVLFTS 393
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 89/213 (41%), Gaps = 33/213 (15%)
Query: 404 QIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLF 463
Q+ S+Q D R+ +++ T E + SPDGK + + ++
Sbjct: 210 QLGYTSYQQGKPDLYVRKSGGDTIRLKTNEGQMATGI-AFSPDGKRVAYALADDESAQIW 268
Query: 464 VLDAVNGEFNGDIRQLTDGPW-IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG 522
V +A NGE RQLTD + I+T P+WSP G IAF SNR V YV+ DG
Sbjct: 269 VANA-NGE---GARQLTDTRFGINTSPAWSPDGKRIAFVSNRGGSPQV-----YVMNADG 319
Query: 523 SGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDL 582
S +RR+ G R + + F+A E F DL
Sbjct: 320 SAVRRLTFQGNYNQTPNWSPRGDLIAFTARDERNAF----------------------DL 357
Query: 583 YVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDL 615
+ V +D + RLT + N P++ P +L L
Sbjct: 358 FTVHVDTGKISRLTQDQANNEEPSFSPNGRLVL 390
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 36/182 (19%)
Query: 434 ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGD-IRQLTDGPWIDTMPSWS 492
+ G N P+ PDG+ L + S + G +L+V + GD IR T+ + T ++S
Sbjct: 196 QGGINLLPALGPDGQ-LGYTSYQQGKPDLYVRKS-----GGDTIRLKTNEGQMATGIAFS 249
Query: 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV-CFSA 551
P G +A++ + E+ ++V +G G R++ R IN +S
Sbjct: 250 PDGKRVAYALA-----DDESAQIWVANANGEGARQLTDT---------RFGINTSPAWSP 295
Query: 552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGN 611
DG+ + F +N G P +YV+ DGS +RRLT+ G N TP W P
Sbjct: 296 DGKRIAFVSNRGG---SP-----------QVYVMNADGSAVRRLTFQGNYNQTPNWSPRG 341
Query: 612 QL 613
L
Sbjct: 342 DL 343
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 81/195 (41%), Gaps = 39/195 (20%)
Query: 336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNS--WSPTEKHVIYTS-- 391
+FSPDG + + + +A I +A ++G L R S WSP K + + S
Sbjct: 247 AFSPDGKRVAYALADDESAQIWVANANGEGARQLTDTRFGINTSPAWSPDGKRIAFVSNR 306
Query: 392 --TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGN-NAFPSCSPDGK 448
+ ++ + R++FQ GN N P+ SP G
Sbjct: 307 GGSPQVYVMNADGSAVRRLTFQ------------------------GNYNQTPNWSPRGD 342
Query: 449 FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD 508
+ F + +N F L V+ + G I +LT + PS+SP G L+ F+S R+ P
Sbjct: 343 LIAFTA--RDERNAFDLFTVHVD-TGKISRLTQDQANNEEPSFSPNGRLVLFTSTRNGPS 399
Query: 509 NVEAFSLYVIKPDGS 523
L+V+ +G+
Sbjct: 400 Q-----LFVMTAEGN 409
>gi|156744050|ref|YP_001434179.1| WD40 domain-containing protein [Roseiflexus castenholzii DSM 13941]
gi|156235378|gb|ABU60161.1| WD40 domain protein beta Propeller [Roseiflexus castenholzii DSM
13941]
Length = 572
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 89/199 (44%), Gaps = 31/199 (15%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN--SWSPTEKHVIYTST 392
PS+SPD +VF N + + ++DGS L + A+ SWSP + V +TS
Sbjct: 74 PSWSPDANHVVFASRRGDNWDLYVMRADGSDLRRL-TNHPAYDGEPSWSPDGRRVAFTSM 132
Query: 393 GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452
+I + LD I D + +T + A P+ SPDG+ + F
Sbjct: 133 ------RDGNPEI----YTLD--------LIGGDARRITTHPAAD-AQPTWSPDGRRIAF 173
Query: 453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA 512
S R G++ +++ DA +G + LT+ P D P+WSP G IAF S+R N+
Sbjct: 174 TSWRDGNQEIYIADAESGA----VINLTNHPAPDHSPAWSPDGGRIAFISDRDGGGNLHI 229
Query: 513 FSLYV-----IKPDGSGLR 526
L PD GLR
Sbjct: 230 RDLITGEELRAGPDNLGLR 248
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 94/211 (44%), Gaps = 46/211 (21%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPD +VF S R + +L+V+ A D+R+LT+ P D PSWSP G +AF
Sbjct: 74 PSWSPDANHVVFASRRGDNWDLYVMRADGS----DLRRLTNHPAYDGEPSWSPDGRRVAF 129
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+S R N E ++L +I G RRI + D +S DG + FT
Sbjct: 130 TSMRDG--NPEIYTLDLI---GGDARRITT---HPAADA------QPTWSPDGRRIAFT- 174
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP-GNQLDL---- 615
SW + Q ++Y+ + + LT + + +PAW P G ++
Sbjct: 175 ----------SWRDGNQ---EIYIADAESGAVINLTNHPAPDHSPAWSPDGGRIAFISDR 221
Query: 616 ---GKLRLEDDI-GDKLRGQFD-----EPLW 637
G L + D I G++LR D +P W
Sbjct: 222 DGGGNLHIRDLITGEELRAGPDNLGLRDPAW 252
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 77/195 (39%), Gaps = 51/195 (26%)
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
S + R +P +IL G+N G F +F + +G + A N
Sbjct: 23 SSEPQRPALPGQGRILFAAARGDN--------GAFDIFSADLAGER------AAN----- 63
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
LT P+ D PSWSP + + F+S R DN + LYV++ DGS LRR+
Sbjct: 64 ----LTADPYPDRSPSWSPDANHVVFASRRG--DN---WDLYVMRADGSDLRRL------ 108
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR 594
NH + + W + V++ + ++Y + L G RR
Sbjct: 109 ---------TNHPAYDGEPSW--------SPDGRRVAFTSMRDGNPEIYTLDLIGGDARR 151
Query: 595 LTWNGYENGTPAWHP 609
+T + + P W P
Sbjct: 152 ITTHPAADAQPTWSP 166
>gi|90418976|ref|ZP_01226887.1| tolB protein, periplasmic component, biopolymer transport system
[Aurantimonas manganoxydans SI85-9A1]
gi|90337056|gb|EAS50761.1| tolB protein, periplasmic component, biopolymer transport system
[Aurantimonas manganoxydans SI85-9A1]
Length = 436
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 80/173 (46%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + +LT IDT PS+SP G I F
Sbjct: 253 PRFSPDGQKVIMSLQQEGNANIYAMDLRSRATT----RLTSTTAIDTSPSYSPDGRRIVF 308
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LYV+ DGSG +RI +GS + +S G+ + FT
Sbjct: 309 ESDRGGRQQ-----LYVMGADGSGQQRISFG--DGS-------YSTPVWSPRGDLIAFTK 354
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QFQ + V++ DGSG R LT +G+ N P W P ++
Sbjct: 355 QSGG----------QFQ----IGVMRPDGSGERILT-SGFHNEGPTWAPNGRV 392
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 15/104 (14%)
Query: 435 TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR-QLTDGPWIDTMPSWSP 493
T + PS SPDG+ +VF S R G + L+V+ A + +G R DG + + P WSP
Sbjct: 291 TAIDTSPSYSPDGRRIVFESDRGGRQQLYVMGA---DGSGQQRISFGDGSY--STPVWSP 345
Query: 494 KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGP 533
+GDLIAF+ F + V++PDGSG R + H GP
Sbjct: 346 RGDLIAFTKQSGG-----QFQIGVMRPDGSGERILTSGFHNEGP 384
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 39 LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA 98
LTDG+ + +F + Q + ++S +G PR+Y + + + E++ + P F R
Sbjct: 199 LTDGSELVLTPRFSPSR-QEVTYMSFGNGEPRVYLLQLETGQREIVGNFPGMTFSPRFSP 257
Query: 99 RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVAS 158
K+ E I Y+ DL++ TRLT +D SPS S G+ I S
Sbjct: 258 DGQKVIMSLQQEGNANI-------YAMDLRSRATTRLTSTTAIDTSPSYSPDGRRIVFES 310
>gi|189184452|ref|YP_001938237.1| TolB protein precursor [Orientia tsutsugamushi str. Ikeda]
gi|226705887|sp|B3CUF6.1|TOLB_ORITI RecName: Full=Protein TolB; Flags: Precursor
gi|189181223|dbj|BAG41003.1| TolB protein precursor [Orientia tsutsugamushi str. Ikeda]
Length = 453
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 18/113 (15%)
Query: 427 VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID 486
+K LTK ++ N + PS SPDG + F S RSG +++++ + G+I++LT P
Sbjct: 297 IKQLTKGQSINTS-PSYSPDGSKIAFVSDRSGSTQIYIMN----DQGGNIKRLTSQPGAY 351
Query: 487 TMPSWSPKGDLIAFSSNRHNPDNVEA--FSLYVIKPDGSGLRRIH----VAGP 533
T P+WSP + IAF+ +EA FS+ VIK DGS R I V GP
Sbjct: 352 TTPAWSPTNNYIAFTK-------IEAGEFSIGVIKLDGSNKRIIATKHLVEGP 397
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Query: 441 PSCSPDG-KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
P SPDG K LV S +++ ++ + G+ I+QLT G I+T PS+SP G IA
Sbjct: 265 PRFSPDGNKILVSNSSTKNVTHIYEINLLTGK----IKQLTKGQSINTSPSYSPDGSKIA 320
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
F S+R + +Y++ G ++R+
Sbjct: 321 FVSDRSG-----STQIYIMNDQGGNIKRL 344
>gi|407799319|ref|ZP_11146212.1| TolB [Oceaniovalibus guishaninsula JLT2003]
gi|407058504|gb|EKE44447.1| TolB [Oceaniovalibus guishaninsula JLT2003]
Length = 442
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 77/173 (44%), Gaps = 39/173 (22%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG +VF S RSG L+++DA NG G+ R+++ G P WSP+GDLIAF
Sbjct: 302 PSYSPDGSQIVFESDRSGTPQLYIMDA-NG---GEPRRISFGQGRYGTPVWSPRGDLIAF 357
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA----GPEGSGDVDRERINHVCFSADGEWL 556
+ N F + V++ DGS R + + GP ++ +G L
Sbjct: 358 TKQ-----NEGRFHIGVMRTDGSEERLLTASFLDEGP--------------TWAPNGRVL 398
Query: 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+FT +P LY V + G LR++ PAW P
Sbjct: 399 MFTRESAGAEGQPA-----------LYSVDISGRNLRKVP-TPQSASDPAWSP 439
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 99/234 (42%), Gaps = 52/234 (22%)
Query: 380 WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNA 439
+SPT ++YTS E QI +QLD + +R +P + +T
Sbjct: 216 FSPTGDRILYTSY------ETGFPQI----YQLD-VGNVSRVSLPVPAESMTFA------ 258
Query: 440 FPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
P +PDG+ ++F + G+ ++F L G +LT+ P I+T PS+SP G I
Sbjct: 259 -PRYAPDGQTVIFSAAMGGNTDIFRLRP-----GGGPEKLTNAPSIETAPSYSPDGSQIV 312
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559
F S+R LY++ +G RRI G G R +S G+ + FT
Sbjct: 313 FESDRSGTPQ-----LYIMDANGGEPRRISF----GQG-----RYGTPVWSPRGDLIAFT 358
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
Q + + V++ DGS R LT + + G P W P ++
Sbjct: 359 --------------KQNEGRFHIGVMRTDGSEERLLTASFLDEG-PTWAPNGRV 397
>gi|21673468|ref|NP_661533.1| TolB protein [Chlorobium tepidum TLS]
gi|32699704|sp|Q8KEQ0.1|TOLB_CHLTE RecName: Full=Protein TolB; Flags: Precursor
gi|21646573|gb|AAM71875.1| tolB protein, putative [Chlorobium tepidum TLS]
Length = 434
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 31/172 (18%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G + P+ SPDG + F S R G +F+ D +G+ +R+LT +T PSWSP G
Sbjct: 290 GIDVSPTFSPDGSKMAFVSTRQGGPQIFIQDMNSGQ----VRRLTYSGIYNTQPSWSPNG 345
Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW 555
D I +SS + + + +++ I DGSGL ++ GSG+ + H +S DG
Sbjct: 346 DKILYSSMQKSGE----INIFSINVDGSGLLQL----TSGSGNNE-----HPSWSPDGSM 392
Query: 556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
++F++ LYV+ DGS R L E P+W
Sbjct: 393 IVFSSTRDGRRR--------------LYVMNADGSNQRPLLNMQGEQQQPSW 430
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 27/161 (16%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN---SWSPTEKHVIYTS 391
P+FSPDG + F + I I + + L + YN SWSP ++Y+S
Sbjct: 295 PTFSPDGSKMAFVSTRQGGPQIFIQDMNSGQVRRLTY--SGIYNTQPSWSPNGDKILYSS 352
Query: 392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451
+ + +I S +D S + +GNN PS SPDG +V
Sbjct: 353 M-------QKSGEINIFSINVDGSG-----------LLQLTSGSGNNEHPSWSPDGSMIV 394
Query: 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
F S R G + L+V++A +G + R L + PSWS
Sbjct: 395 FSSTRDGRRRLYVMNA-DGS---NQRPLLNMQGEQQQPSWS 431
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 35/170 (20%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD-LIA 499
P+ SPDG ++ + SG NL++ + G + + + P+W P + L+
Sbjct: 208 PAVSPDGTYIAWTDYTSGKPNLYIKNIATGA-----KVSVNKHGVCISPAWRPGTNTLVT 262
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559
S + D LY+I+ DG+ RR+ G DV FS DG + F
Sbjct: 263 TLSYEGDQD------LYLIRADGTVERRLTKGGGI---DV------SPTFSPDGSKMAFV 307
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ Q P +++ ++ +RRLT++G N P+W P
Sbjct: 308 ST------------RQGGP--QIFIQDMNSGQVRRLTYSGIYNTQPSWSP 343
Score = 42.4 bits (98), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 37/172 (21%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI-RQLTDGPWIDTMPSWSPKGDLIA 499
P+ P LV G ++L+++ A +G + R+LT G ID P++SP G +A
Sbjct: 251 PAWRPGTNTLVTTLSYEGDQDLYLIRA-----DGTVERRLTKGGGIDVSPTFSPDGSKMA 305
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559
F S R + ++ + +RR+ +G + +S +G+ +L++
Sbjct: 306 FVSTRQGGPQI-----FIQDMNSGQVRRLTYSGIYNT---------QPSWSPNGDKILYS 351
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYV--VKLDGSGLRRLTWNGYENGTPAWHP 609
+ Q G++ + + +DGSGL +LT N P+W P
Sbjct: 352 S---------------MQKSGEINIFSINVDGSGLLQLTSGSGNNEHPSWSP 388
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 99/255 (38%), Gaps = 26/255 (10%)
Query: 122 LYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQES 181
+Y D +LT + +P+VS G +IA Y S G+ + +I +
Sbjct: 185 IYMCDFDGENVVQLTNSRSISLTPAVSPDGTYIAWTDYTS----GKPNLYIKNIATGAKV 240
Query: 182 DPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPP 241
NK + P W + + +G ++ + +E R+T
Sbjct: 241 SVNKHGVCIS----PAWRPGTNTLVTTLSYEGDQDLYLIRADGTVE--------RRLTKG 288
Query: 242 GVHCFTPAAFHDGKRLAVATRRKN------RNFRHIEIYDLTLNPNFHHYNPFVSANSEF 295
G +P DG ++A + R+ ++ ++ LT + ++ P S N +
Sbjct: 289 GGIDVSPTFSPDGSKMAFVSTRQGGPQIFIQDMNSGQVRRLTYS-GIYNTQPSWSPNGDK 347
Query: 296 IGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG 355
I Y + G+ I + S + +L N PS+SPDG +IVF+ +
Sbjct: 348 ILYSSMQ---KSGEINIFSINVDGSGLLQLTSGSGNNEHPSWSPDGSMIVFSSTRDGRRR 404
Query: 356 IKIAKSDGSKRWTLI 370
+ + +DGS + L+
Sbjct: 405 LYVMNADGSNQRPLL 419
>gi|442323279|ref|YP_007363300.1| tolB protein [Myxococcus stipitatus DSM 14675]
gi|441490921|gb|AGC47616.1| tolB protein [Myxococcus stipitatus DSM 14675]
Length = 430
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 90/227 (39%), Gaps = 35/227 (15%)
Query: 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTG 393
PS S DG + + + + + + G + + + ++SP K + Y+
Sbjct: 199 LPSLSNDGAQVAYTSYRKNRPDLYVQRPGGDAKMVVSDGQMITGGAFSPDGKRLAYSQA- 257
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453
+ E A + +A K +T G N PS SPDGK + F
Sbjct: 258 ---EGESAQIYVANAD--------------GSGAKAVTDTPYGLNTSPSWSPDGKRIAFV 300
Query: 454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF 513
S R G ++++ G +R+LT + P WSP+GDLI F++ D AF
Sbjct: 301 SNRGGSPQIYIM----GADGSGVRRLTFQGNYNQTPDWSPRGDLIVFTAR----DERNAF 352
Query: 514 SLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
L+ + + + R+ D+ FS +G +LFT+
Sbjct: 353 DLFTVNVETGKVTRMT---------QDQGNNEEPAFSPNGRLILFTS 390
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 110/265 (41%), Gaps = 54/265 (20%)
Query: 353 NAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412
N I +A DG L K S S V YTS ++ R + + R
Sbjct: 175 NRDIAVADWDGGNPVVLTKGGINILPSLSNDGAQVAYTS----YRKNRPDLYVQR----- 225
Query: 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
P D + + D +++T AF SPDGK L + ++V N +
Sbjct: 226 -PGGD--AKMVVSDGQMIT-----GGAF---SPDGKRLAYSQAEGESAQIYV---ANADG 271
Query: 473 NGDIRQLTDGPW-IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA 531
+G + +TD P+ ++T PSWSP G IAF SNR + Y++ DGSG+RR+
Sbjct: 272 SG-AKAVTDTPYGLNTSPSWSPDGKRIAFVSNRGGSPQI-----YIMGADGSGVRRLTFQ 325
Query: 532 GPEGSGDVDRERINHVC-FSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590
G N +S G+ ++FTA N F DL+ V ++
Sbjct: 326 G----------NYNQTPDWSPRGDLIVFTAR---------DERNAF----DLFTVNVETG 362
Query: 591 GLRRLTWNGYENGTPAWHPGNQLDL 615
+ R+T + N PA+ P +L L
Sbjct: 363 KVTRMTQDQGNNEEPAFSPNGRLIL 387
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 108/242 (44%), Gaps = 35/242 (14%)
Query: 235 PTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI----YDLTLNPNFHHYNPFVS 290
P +T G++ P+ +DG ++A + RKNR +++ + ++ S
Sbjct: 188 PVVLTKGGINIL-PSLSNDGAQVAYTSYRKNRPDLYVQRPGGDAKMVVSDGQMITGGAFS 246
Query: 291 ANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDF 350
+ + + Y + GES Q + + + + LN S PS+SPDG I F +
Sbjct: 247 PDGKRLAYSQAEGESA--QIYVANADGSGAKAVTDTPYGLNTS-PSWSPDGKRIAFVSNR 303
Query: 351 ELNAGIKIAKSDGS--KRWTLIKDRTAFYNS---WSPTEKHVIYTSTGPIFQSERATVQI 405
+ I I +DGS +R T + YN WSP +++T+ + ER +
Sbjct: 304 GGSPQIYIMGADGSGVRRLTFQGN----YNQTPDWSPRGDLIVFTA-----RDERNAFDL 354
Query: 406 ARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVL 465
V+ + V +T+++ GNN P+ SP+G+ ++F S R+G LFV+
Sbjct: 355 FTVNVET------------GKVTRMTQDQ-GNNEEPAFSPNGRLILFTSTRAGGTQLFVM 401
Query: 466 DA 467
A
Sbjct: 402 TA 403
>gi|118594344|ref|ZP_01551691.1| translocation protein TolB precursor [Methylophilales bacterium
HTCC2181]
gi|118440122|gb|EAV46749.1| translocation protein TolB precursor [Methylophilales bacterium
HTCC2181]
Length = 432
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 39/230 (16%)
Query: 278 LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRM-LRLNGSFPS 336
+N + +P S N + I Y F E + + +++ + + + L R N S P+
Sbjct: 196 VNSRYSIISPRWSPNGKKIAYVSF-----EKKKPVIYVQDIETGKRTLLANFRGNNSAPA 250
Query: 337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTS---- 391
+SPD + + N+ I +DG L++ R+ +WSP K + ++S
Sbjct: 251 WSPDSKKLAIVLTYSANSQIYTIDADGKNIKQLMRTRSINTEPAWSPNGKEIYFSSDRAG 310
Query: 392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451
+ I++ + T ++ RV+F E NN PS SPDGK L+
Sbjct: 311 SAQIYKVDVDTNEVVRVTF-----------------------EGNNNVSPSLSPDGKLLL 347
Query: 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFS 501
F + +G + A+ + + +LT+GP D P +SP G ++ F+
Sbjct: 348 FLNQDNGSYRV----AIQNLLSNQMLKLTNGP-DDESPIFSPNGHMVLFT 392
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 89/202 (44%), Gaps = 38/202 (18%)
Query: 358 IAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD 416
IA DG ++ R + + WSP K + Y S F+ ++ + +
Sbjct: 184 IADYDGHNPRAIVNSRYSIISPRWSPNGKKIAYVS----FEKKKPVIYV----------- 228
Query: 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI 476
++I + L GNN+ P+ SPD K L S + ++ +DA +G+ +I
Sbjct: 229 ----QDIETGKRTLLANFRGNNSAPAWSPDSKKLAIVLTYSANSQIYTIDA-DGK---NI 280
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS 536
+QL I+T P+WSP G I FSS+R + +Y + D + + R+ EG+
Sbjct: 281 KQLMRTRSINTEPAWSPNGKEIYFSSDRAG-----SAQIYKVDVDTNEVVRVTF---EGN 332
Query: 537 GDVDRERINHVCFSADGEWLLF 558
+V S DG+ LLF
Sbjct: 333 NNVSP------SLSPDGKLLLF 348
>gi|350545994|ref|ZP_08915426.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group Acolicins [Candidatus
Burkholderia kirkii UZHbot1]
gi|350526231|emb|CCD41002.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group Acolicins [Candidatus
Burkholderia kirkii UZHbot1]
Length = 427
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 116/305 (38%), Gaps = 74/305 (24%)
Query: 342 GLIVFNHDFELNAG----IKIAKSDGS-KRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIF 396
G+ + ++AG ++I+ SDG + L +WSP V Y +F
Sbjct: 157 GVFATRLSYVIHAGGRYQLQISDSDGQDAKIALSSPEPIISPAWSPDGTKVAYV----LF 212
Query: 397 QSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR 456
+ ++ V I ++P +++ + GNN+ P+ SPDG+ L R
Sbjct: 213 ERKKPVVYI---------------HDLPTGRRVVVSNQKGNNSAPAWSPDGRKLAVALSR 257
Query: 457 SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY 516
+G+ +F VN + +G +R+LT G IDT P +SP G+ I F+S+R +
Sbjct: 258 TGNTQIF---EVNADGSG-LRRLTQGSSIDTEPFFSPDGNWIYFTSDRGGQPQIYKMPAA 313
Query: 517 --------------------VIKPDGSGLRRIH------------VAGPEGSGDVDRERI 544
+ PDG L I +A +G D
Sbjct: 314 GESAGAAQRVTFTGSYNTSPRVSPDGKQLAYIARTGGGFKLYLQDLASGTATGLTDTTHD 373
Query: 545 NHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGT 604
F+A+G+++L+ Q G L V DG + L+ G
Sbjct: 374 ESPSFAANGQYILYA--------------TQVNGRGVLAAVSTDGRTRQVLSVQGGVVRE 419
Query: 605 PAWHP 609
P+W P
Sbjct: 420 PSWGP 424
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 26/129 (20%)
Query: 486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERIN 545
++ P+WSP G +A + +R N + F + DGSGLRR+ +GS +D E
Sbjct: 239 NSAPAWSPDGRKLAVALSRTG--NTQIFE---VNADGSGLRRL----TQGS-SIDTEPF- 287
Query: 546 HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTP 605
FS DG W+ FT++ G Q Q Y + +R+T+ G N +P
Sbjct: 288 ---FSPDGNWIYFTSDRG----------GQPQIY-KMPAAGESAGAAQRVTFTGSYNTSP 333
Query: 606 AWHP-GNQL 613
P G QL
Sbjct: 334 RVSPDGKQL 342
>gi|153207184|ref|ZP_01945963.1| TolB protein [Coxiella burnetii 'MSU Goat Q177']
gi|120576845|gb|EAX33469.1| TolB protein [Coxiella burnetii 'MSU Goat Q177']
Length = 437
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 27/205 (13%)
Query: 314 HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG---IKIAKSDG-SKRWTL 369
L A + +L +L G FS ++ E A +++A +DG + + L
Sbjct: 142 ELRNFAHHISDLIYQKLTGVRGVFSTKIAYVLVQASSENTAAKYTLEVADADGFNPQPLL 201
Query: 370 IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI 429
+ D +WSP + Y S F+ RA + + +++ +
Sbjct: 202 VSDMPIMSPTWSPDGNKIAYVS----FEGHRAAIYL---------------QDLATGRRQ 242
Query: 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489
E G N P+ SPD K L ++G+ +++L+ +G +R++T G IDT P
Sbjct: 243 RLSEAPGINGAPAFSPDSKQLALVLTKTGNPKIYILNLADGH----LREITKGWSIDTEP 298
Query: 490 SWSPKGDLIAFSSNRHNPDNVEAFS 514
+WSP G + F+SNR + +S
Sbjct: 299 AWSPDGKSLLFTSNRDGTPQIYNYS 323
>gi|83746171|ref|ZP_00943225.1| TolB protein [Ralstonia solanacearum UW551]
gi|83727137|gb|EAP74261.1| TolB protein [Ralstonia solanacearum UW551]
Length = 434
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 35/211 (16%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG+ + L + SWSP V Y S F+S + V +
Sbjct: 182 LQISDSDGANPQIALTSNEPIISPSWSPDGTKVAYVS----FESRKPVVYV--------- 228
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++ + + + GNN+ P+ SPDG+ + R G+ +++ VN + +G
Sbjct: 229 ------HDLLTGRRAVVSNQKGNNSAPAWSPDGRRVAVALSRDGNTQIYL---VNADGSG 279
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
+R+LT IDT PS+SP G I F+S+R V + + V D G +R+ G
Sbjct: 280 -LRRLTRSSAIDTEPSFSPDGRSIYFTSDRGGAPQV--YRMPVEGEDAGGAQRVTFKG-- 334
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAV 565
G RI S DG+ L + A +G
Sbjct: 335 --GYNTSPRI-----SPDGKLLAYIARVGGA 358
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 22/173 (12%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIY 389
N S P++SPDG + + N I + +DGS L + S+SP + + +
Sbjct: 245 NNSAPAWSPDGRRVAVALSRDGNTQIYLVNADGSGLRRLTRSSAIDTEPSFSPDGRSIYF 304
Query: 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF 449
TS Q+ R+ + + + R + G N P SPDGK
Sbjct: 305 TS------DRGGAPQVYRMPVEGEDAGGAQRVTF----------KGGYNTSPRISPDGKL 348
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
L + + G L+V D NG+ G LTD + D PS++ G I +++
Sbjct: 349 LAYIARVGGAFKLYVQDLSNGDVTG----LTDTSY-DESPSFAANGKFILYAT 396
>gi|117619070|ref|YP_858094.1| translocation protein TolB [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|166988073|sp|A0KP93.1|TOLB_AERHH RecName: Full=Protein TolB; Flags: Precursor
gi|117560477|gb|ABK37425.1| Tol-Pal system beta propeller repeat protein TolB [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
Length = 441
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 121/320 (37%), Gaps = 45/320 (14%)
Query: 310 STIP--HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW 367
+TIP + A + ++ RL G +F + + ++IA DG
Sbjct: 144 ATIPGAQMRQFAHRISDIVYERLTGERGAFLTRLAYVSVQQGTQFPYQLRIADYDGYNEK 203
Query: 368 TLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD 426
TL++ R + +WSP + Y S F+++++ + + ++I
Sbjct: 204 TLLRSREPLMSPAWSPDGSKLAYVS----FENQKSEIYV---------------QDIYTQ 244
Query: 427 VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID 486
+ L G N P SPDG+ L + G NL+V+D + + ++T ID
Sbjct: 245 QRSLITSFRGINGAPEWSPDGRRLAIVLSKDGSPNLYVVDVASKQLT----RVTTSRVID 300
Query: 487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYV-----------------IKPDGSGLRRIH 529
T PSW P G + F+S R + + +L I PDG + +
Sbjct: 301 TEPSWMPDGQNLLFTSERGGKPQIYSVNLATGMTRRMTWEGESNQGASITPDGKIM--VM 358
Query: 530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589
V +G + R+ + + + L + A + + +Q L +V DG
Sbjct: 359 VTRVQGQYRIARQDMENNALLVLTQSALDESPSVAPNGSMIIYATIYQGRKSLALVSTDG 418
Query: 590 SGLRRLTWNGYENGTPAWHP 609
L + E PAW P
Sbjct: 419 RFKAVLPTSSGEIRAPAWSP 438
>gi|207744076|ref|YP_002260468.1| protein tolb precursor [Ralstonia solanacearum IPO1609]
gi|421900228|ref|ZP_16330591.1| protein tolb precursor [Ralstonia solanacearum MolK2]
gi|206591434|emb|CAQ57046.1| protein tolb precursor [Ralstonia solanacearum MolK2]
gi|206595480|emb|CAQ62407.1| protein tolb precursor [Ralstonia solanacearum IPO1609]
Length = 432
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 35/211 (16%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG+ + L + SWSP V Y S F+S + V +
Sbjct: 180 LQISDSDGANPQIALTSNEPIISPSWSPDGTKVAYVS----FESRKPVVYV--------- 226
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++ + + + GNN+ P+ SPDG+ + R G+ +++ VN + +G
Sbjct: 227 ------HDLLTGRRAVVSNQKGNNSAPAWSPDGRRVAVALSRDGNTQIYL---VNADGSG 277
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
+R+LT IDT PS+SP G I F+S+R V + + V D G +R+ G
Sbjct: 278 -LRRLTRSSAIDTEPSFSPDGRSIYFTSDRGGAPQV--YRMPVEGEDAGGAQRVTFKG-- 332
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAV 565
G RI S DG+ L + A +G
Sbjct: 333 --GYNTSPRI-----SPDGKLLAYIARVGGA 356
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 22/173 (12%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIY 389
N S P++SPDG + + N I + +DGS L + S+SP + + +
Sbjct: 243 NNSAPAWSPDGRRVAVALSRDGNTQIYLVNADGSGLRRLTRSSAIDTEPSFSPDGRSIYF 302
Query: 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF 449
TS Q+ R+ + + + R + G N P SPDGK
Sbjct: 303 TS------DRGGAPQVYRMPVEGEDAGGAQRVTF----------KGGYNTSPRISPDGKL 346
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
L + + G L+V D NG+ G LTD + D PS++ G I +++
Sbjct: 347 LAYIARVGGAFKLYVQDLSNGDVTG----LTDTSY-DESPSFAANGKFILYAT 394
>gi|380513586|ref|ZP_09856993.1| translocation protein TolB [Xanthomonas sacchari NCPPB 4393]
Length = 439
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 29/178 (16%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A SDG T+++ + +WSP K + Y S F+ +++ I
Sbjct: 186 LMVADSDGYNPQTIVRSAEPLLSPNWSPDGKKLAYVS----FERGNSSIYI--------- 232
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++I + L G N PS SPDGK L RSG+ ++V+D + +
Sbjct: 233 ------QDIATGARQLVSSFRGINGAPSFSPDGKKLALALSRSGNPEIYVMDLGSKQLT- 285
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
QLT+ IDT P+W+P G+ I F+S+R + Y + G RI G
Sbjct: 286 ---QLTNHFGIDTEPTWAPDGNSIYFTSDRSGRPQI-----YQVPATGGSATRITFQG 335
>gi|296535985|ref|ZP_06898130.1| tol-Pal system beta propeller repeat protein TolB, partial
[Roseomonas cervicalis ATCC 49957]
gi|296263689|gb|EFH10169.1| tol-Pal system beta propeller repeat protein TolB [Roseomonas
cervicalis ATCC 49957]
Length = 434
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 87/197 (44%), Gaps = 40/197 (20%)
Query: 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI 476
D+ R+E+ + + +T P SPDG+ +V S R G N++V+D +
Sbjct: 227 DSGRQEVLGNFQGMTLS-------PRFSPDGRSVVLSSARGGDANIYVVDLASRRE---- 275
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS 536
RQLT G +D PS+SP G I F+S+R LYV+ G G RRI G+
Sbjct: 276 RQLTSGGGLDVSPSYSPDGSQIVFNSDRGGDQQ-----LYVMDAGGGGARRISF----GN 326
Query: 537 GDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596
G R +S G+ + FT G + V++ DGSG R L+
Sbjct: 327 G-----RYATPVWSPRGDLIAFTRISGGRFG--------------IGVMRPDGSGERILS 367
Query: 597 WNGYENGTPAWHPGNQL 613
G+ P++ P ++
Sbjct: 368 -EGWSMEGPSFAPNGRV 383
>gi|386334287|ref|YP_006030458.1| protein tolb precursor [Ralstonia solanacearum Po82]
gi|334196737|gb|AEG69922.1| protein tolb precursor [Ralstonia solanacearum Po82]
Length = 431
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 35/211 (16%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG+ + L + SWSP V Y S F+S + V +
Sbjct: 179 LQISDSDGANPQIALTSNEPIISPSWSPDGTKVAYVS----FESRKPVVYV--------- 225
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++ + + + GNN+ P+ SPDG+ + R G+ +++ VN + +G
Sbjct: 226 ------HDLLTGRRAVVSNQKGNNSAPAWSPDGRRVAVALSRDGNTQIYL---VNADGSG 276
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
+R+LT IDT PS+SP G I F+S+R V + + V D G +R+ G
Sbjct: 277 -LRRLTRSSAIDTEPSFSPDGRSIYFTSDRGGAPQV--YRMPVEGEDAGGAQRVTFKG-- 331
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAV 565
G RI S DG+ L + A +G
Sbjct: 332 --GYNTSPRI-----SPDGKLLAYIARVGGA 355
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 22/173 (12%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIY 389
N S P++SPDG + + N I + +DGS L + S+SP + + +
Sbjct: 242 NNSAPAWSPDGRRVAVALSRDGNTQIYLVNADGSGLRRLTRSSAIDTEPSFSPDGRSIYF 301
Query: 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF 449
TS Q+ R+ + + + R + G N P SPDGK
Sbjct: 302 TS------DRGGAPQVYRMPVEGEDAGGAQRVTF----------KGGYNTSPRISPDGKL 345
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
L + + G L+V D NG+ G LTD + D PS++ G I +++
Sbjct: 346 LAYIARVGGAFKLYVQDLSNGDVTG----LTDTSY-DESPSFAANGKFILYAT 393
>gi|421748226|ref|ZP_16185852.1| translocation protein TolB [Cupriavidus necator HPC(L)]
gi|409773072|gb|EKN54937.1| translocation protein TolB [Cupriavidus necator HPC(L)]
Length = 424
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 108/286 (37%), Gaps = 69/286 (24%)
Query: 356 IKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ I+ SDG + R L + SWSP V Y S F++++ V +
Sbjct: 162 LLISDSDGQNSRVALTSNEPIISPSWSPDGAKVAYVS----FEAKKPVVYV--------- 208
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++ + L + GNN+ P+ SPDG+ L R G+ ++ VN + +G
Sbjct: 209 ------HDLATGRRTLVSNQKGNNSAPAWSPDGRHLALALSRDGNTQIY---QVNADGSG 259
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY------------------ 516
+R+L+ IDT P +SP G I F+S+R +
Sbjct: 260 -LRRLSRSSAIDTEPQYSPDGRHIYFTSDRGGAPQIYRMPAAGEESGAAQRVTFKGNYNV 318
Query: 517 --VIKPDGSGLRRIHVAG-------PEGSGDV----DRERINHVCFSADGEWLLFTANLG 563
+ PDG L I G GSGDV D F+A+G+++L+ +G
Sbjct: 319 SPRVSPDGKQLAYISRGGGFKLQLMDLGSGDVTALTDTANDEAPSFAANGKYILYATRVG 378
Query: 564 AVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
L V DG + L+ E P+W P
Sbjct: 379 GRAV--------------LAAVSTDGRTKQVLSLQSGEVREPSWGP 410
>gi|212219431|ref|YP_002306218.1| TolB [Coxiella burnetii CbuK_Q154]
gi|212013693|gb|ACJ21073.1| TolB [Coxiella burnetii CbuK_Q154]
Length = 440
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 27/205 (13%)
Query: 314 HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG---IKIAKSDG-SKRWTL 369
L A + +L +L G FS ++ E A +++A +DG + + L
Sbjct: 145 ELRNFAHHISDLIYQKLTGVRGVFSTKIAYVLVQASSENTAAKYTLEVADADGFNPQPLL 204
Query: 370 IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI 429
+ D +WSP + Y S F+ RA + + +++ +
Sbjct: 205 VSDMPIMSPTWSPDGNKIAYVS----FEGHRAAIYL---------------QDLATGRRQ 245
Query: 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489
E G N P+ SPD K L ++G+ +++L+ +G +R++T G IDT P
Sbjct: 246 RLSEAPGINGAPAFSPDSKQLALVLTKTGNPKIYILNLADGH----LREITKGWSIDTEP 301
Query: 490 SWSPKGDLIAFSSNRHNPDNVEAFS 514
+WSP G + F+SNR + +S
Sbjct: 302 AWSPDGKSLLFTSNRDGTPQIYNYS 326
>gi|114327770|ref|YP_744927.1| translocation protein TolB [Granulibacter bethesdensis CGDNIH1]
gi|114315944|gb|ABI62004.1| tolB protein [Granulibacter bethesdensis CGDNIH1]
Length = 452
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 85/184 (46%), Gaps = 33/184 (17%)
Query: 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489
+ E G P SPDG +V R G +++V+ G G RQLT+ IDT P
Sbjct: 260 MLGEWPGMTFAPRFSPDGSSVVMSMTRGGGSDIYVV----GLGGGGHRQLTNSGSIDTSP 315
Query: 490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCF 549
+SP G I F+S+R LYV+ DGSG+RRI GSG R +
Sbjct: 316 CFSPDGSQIVFNSDRGGDQQ-----LYVMGADGSGVRRISF----GSG-----RYATPVW 361
Query: 550 SADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
S G+ + FT LG+ +W ++ V+K DGSG R L GY+ P + P
Sbjct: 362 SPRGDLIAFT-RLGS-----SAW--------NIGVMKPDGSGERILA-QGYDVEGPTFCP 406
Query: 610 GNQL 613
++
Sbjct: 407 NGRV 410
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 70/184 (38%), Gaps = 48/184 (26%)
Query: 460 KNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYV-- 517
K L V+D + + + R LTDG W+ P + P D I F S +N V F+L
Sbjct: 202 KRLAVMD----QDSANNRYLTDGSWMVLTPRFHPTRDEIVFMSYANNRPRVYTFNLATGG 257
Query: 518 ---------------IKPDGS---------GLRRIHVAGPEGSGDVDRERINHV----CF 549
PDGS G I+V G G G + CF
Sbjct: 258 QRMLGEWPGMTFAPRFSPDGSSVVMSMTRGGGSDIYVVGLGGGGHRQLTNSGSIDTSPCF 317
Query: 550 SADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
S DG ++F ++ G LYV+ DGSG+RR+++ TP W P
Sbjct: 318 SPDGSQIVFNSDRGGDQ--------------QLYVMGADGSGVRRISFGSGRYATPVWSP 363
Query: 610 GNQL 613
L
Sbjct: 364 RGDL 367
>gi|417850927|ref|ZP_12496742.1| translocation protein TolB [Pasteurella multocida subsp. gallicida
str. Anand1_poultry]
gi|338220238|gb|EGP05784.1| translocation protein TolB [Pasteurella multocida subsp. gallicida
str. Anand1_poultry]
Length = 432
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 29/225 (12%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHV 387
+L G +F IV H ++++ DG ++ + + + +WS K +
Sbjct: 160 KLTGIRGAFRTRIAYIVQKHGGSQPYEVRVSDYDGFNQFVVNRSAQPLMSPAWSHDGKKL 219
Query: 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
Y S F+++++ + + +++ + + G+N P SPDG
Sbjct: 220 AYVS----FENKKSQLVV---------------QDLGSGARKVVASFNGHNGAPEFSPDG 260
Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP 507
L F S + G N++V++ +G+ I QLT G +T PSWSP G I F+S+R
Sbjct: 261 SRLAFASSKDGVLNIYVMNLGSGQ----ISQLTSGTGNNTEPSWSPDGQTIVFTSDRSGS 316
Query: 508 DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD 552
V Y + G G + G SG + + + S D
Sbjct: 317 PQV-----YQMSASGGGASLVSTGGRSYSGQMTADGSAIIMISRD 356
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 16/124 (12%)
Query: 38 RLTDGTSINFNAQFV-DGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRP 96
+LT GT N + DGQ TI F S+RSGSP++YQ L+ S + +
Sbjct: 287 QLTSGTGNNTEPSWSPDGQ--TIVFTSDRSGSPQVYQMSASGGGASLV-STGGRSYSGQM 343
Query: 97 VARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAV 156
A + + IS D I K A ST++ +S F +D SPS+S +G I
Sbjct: 344 TADGSAIIMISR----DNIVKKDLASGSTEVLSSTF--------LDESPSISPNGIMIIY 391
Query: 157 ASYE 160
+S +
Sbjct: 392 SSTQ 395
>gi|417860851|ref|ZP_12505906.1| translocation protein TolB [Agrobacterium tumefaciens F2]
gi|338821255|gb|EGP55224.1| translocation protein TolB [Agrobacterium tumefaciens F2]
Length = 443
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + +LT+ IDT PS+SP G +AF
Sbjct: 260 PRFSPDGQKVIMSLQQDGNANIYTMDLRSRT----TTRLTNTSAIDTAPSFSPDGQRVAF 315
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGSG +R+ +GS + +S G+ + FT
Sbjct: 316 ESDRGGRQQI-----YVMNADGSGQQRLSFG--DGS-------YSTPVWSPRGDLIAFTK 361
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT +G+ N P W P ++
Sbjct: 362 QSGGKFS--------------IGVMKTDGSGERILT-SGFHNEGPTWAPNGRV 399
>gi|347734869|ref|ZP_08867846.1| Protein tolB [Azospirillum amazonense Y2]
gi|346922046|gb|EGY02563.1| Protein tolB [Azospirillum amazonense Y2]
Length = 444
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 104/259 (40%), Gaps = 53/259 (20%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ I DG L R +SPT + + Y S + + R V I V
Sbjct: 189 LAIMDQDGENNLYLTDGRVLVLTPRFSPTAQEITYLS----YFNNRPRVYIFNV------ 238
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
D R+E+ D G P SPDG ++ ++G+ ++++LD
Sbjct: 239 --DTGRQEVLGDFP-------GMTFAPRFSPDGNKVIMSLAQNGNTDIYLLDLRTRRQT- 288
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
+LTD P IDT PS+SP G I F S+R + Y + DG+ ++RI
Sbjct: 289 ---RLTDNPAIDTAPSFSPDGSKITFESDRGGSQQI-----YTMNADGTNVQRITF---- 336
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR 594
G+G + +S G+ + FT G + + V++ DGSG R
Sbjct: 337 GAG-----KYGTPVWSPRGDLIAFTRINGGRFS--------------IGVIRPDGSGERE 377
Query: 595 LTWNGYENGTPAWHPGNQL 613
L+ GY P W P ++
Sbjct: 378 LS-TGYLVEGPTWAPNGRV 395
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 70/179 (39%), Gaps = 15/179 (8%)
Query: 39 LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA 98
LTDG + +F Q I ++S + PR+Y + + E+L P F R
Sbjct: 202 LTDGRVLVLTPRF-SPTAQEITYLSYFNNRPRVYIFNVDTGRQEVLGDFPGMTFAPRFSP 260
Query: 99 RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVAS 158
NK+ A + +Y DL+ + TRLT +D +PS S G I S
Sbjct: 261 DGNKVIMSLAQ-------NGNTDIYLLDLRTRRQTRLTDNPAIDTAPSFSPDGSKITFES 313
Query: 159 YESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSI 217
R + + +N D ++ + + G P WS + + + G +SI
Sbjct: 314 --DRGGSQQIYTMNAD-----GTNVQRITFGAGKYGTPVWSPRGDLIAFTRINGGRFSI 365
>gi|86739661|ref|YP_480061.1| serine/threonine protein kinase [Frankia sp. CcI3]
gi|86566523|gb|ABD10332.1| serine/threonine protein kinase [Frankia sp. CcI3]
Length = 734
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 92/206 (44%), Gaps = 31/206 (15%)
Query: 335 PSFSPDGGLIVF----NHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIY- 389
PS SPDGG +V + LN G+ + K DGS L A +WSP + + Y
Sbjct: 541 PSLSPDGGFLVIRSTTDQTGTLNPGLYVVKLDGSSVRRLNAKPQATDPAWSPDGERIAYW 600
Query: 390 -TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGK 448
STG R + + P+ +T+++ ++ P SPD +
Sbjct: 601 SNSTG----GNRGFIVVIPTQPDAQPTP-------------ITQDQGNGDSDPVWSPDSR 643
Query: 449 FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD 508
+ F ++G +F +++ +G D RQLT D P+++P G IAFS R NP
Sbjct: 644 KIAFTRAKNGDLEIFEMNS-DGT---DARQLTRVRGDDQDPAYAPDG-RIAFSGQR-NPT 697
Query: 509 NVEAFSLYVIKPD--GSGLRRIHVAG 532
N + LYV+ PD G R++ G
Sbjct: 698 NPDDRQLYVLNPDDLNDGDRKLTTTG 723
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 39/189 (20%)
Query: 432 KEETGNNAFPSCSPDGKFLVFRS--GRSGHKN--LFVLDAVNGEFNG-DIRQLTDGPWID 486
K ++A PS SPDG FLV RS ++G N L+V+ + +G +R+L P
Sbjct: 532 KLTIADDARPSLSPDGGFLVIRSTTDQTGTLNPGLYVV-----KLDGSSVRRLNAKPQA- 585
Query: 487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINH 546
T P+WSP G+ IA+ SN + V+ P + + +G+GD D
Sbjct: 586 TDPAWSPDGERIAYWSNSTGGNR----GFIVVIPTQPDAQPTPITQDQGNGDSD------ 635
Query: 547 VCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKL--DGSGLRRLTWNGYENGT 604
+S D + FT GDL + ++ DG+ R+LT ++
Sbjct: 636 PVWSPDSRKIAFT----------------RAKNGDLEIFEMNSDGTDARQLTRVRGDDQD 679
Query: 605 PAWHPGNQL 613
PA+ P ++
Sbjct: 680 PAYAPDGRI 688
>gi|300023930|ref|YP_003756541.1| Tol-Pal system beta propeller repeat protein TolB [Hyphomicrobium
denitrificans ATCC 51888]
gi|299525751|gb|ADJ24220.1| Tol-Pal system beta propeller repeat protein TolB [Hyphomicrobium
denitrificans ATCC 51888]
Length = 445
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 107/260 (41%), Gaps = 54/260 (20%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ I DG+ L + + +SPT + + Y S + S++ V I +
Sbjct: 193 LAIMDQDGANVRLLTQGKELVLTPRFSPTNQEITYMS----YTSDQPKVFIMNL------ 242
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR-SGHKNLFVLDAVNGEFN 473
++ R E+ D +T P SPDG+ +V G G +++ +D +
Sbjct: 243 --ESGRRELVGDFPGMTFA-------PRFSPDGQRVVMSLGTPDGRSSIYEMDLRTRQ-- 291
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP 533
R+LT+ IDT PS+SP G I F S+R LYV+ DGSG I + G
Sbjct: 292 --PRRLTESSGIDTSPSYSPDGRQIVFESDRDGTQK-----LYVMNADGSGAHPISLGGG 344
Query: 534 EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR 593
S V +S G+++ FT G + V+K DGSG R
Sbjct: 345 SYSTPV---------WSPRGDYIAFTQQAGGRFL--------------IGVMKPDGSGER 381
Query: 594 RLTWNGYENGTPAWHPGNQL 613
LT G+ N P W P ++
Sbjct: 382 VLT-EGFHNEGPTWAPNGRV 400
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 82/181 (45%), Gaps = 39/181 (21%)
Query: 433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
E +G + PS SPDG+ +VF S R G + L+V++A +G I L G + + P WS
Sbjct: 297 ESSGIDTSPSYSPDGRQIVFESDRDGTQKLYVMNA-DGSGAHPI-SLGGGSY--STPVWS 352
Query: 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGPEGSGDVDRERINHVC 548
P+GD IAF+ F + V+KPDGSG R + H GP
Sbjct: 353 PRGDYIAFTQQAGG-----RFLIGVMKPDGSGERVLTEGFHNEGP--------------T 393
Query: 549 FSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWH 608
++ +G L+F + + P +Y V + G R++T + + PAW
Sbjct: 394 WAPNGRVLMFWRDSQSTSGGP-----------KIYSVDITGFNERQVTTPSFAS-DPAWS 441
Query: 609 P 609
P
Sbjct: 442 P 442
>gi|418054432|ref|ZP_12692488.1| Protein tolB [Hyphomicrobium denitrificans 1NES1]
gi|353212057|gb|EHB77457.1| Protein tolB [Hyphomicrobium denitrificans 1NES1]
Length = 445
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 108/260 (41%), Gaps = 54/260 (20%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ I DG+ L + + +SPT + + Y S + S++ V I +
Sbjct: 193 LAIMDQDGANVRLLTQGKELVLTPRFSPTNQEITYMS----YTSDQPKVFIMNL------ 242
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR-SGHKNLFVLDAVNGEFN 473
+ R E+ D +T P SPDG+ +V G G +++ +D +
Sbjct: 243 --ETGRRELVGDFPGMTFA-------PRFSPDGQRVVMSLGTPDGRSSIYEMDLRTRQS- 292
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP 533
R+LT+ IDT PS+SP G I F S+R A LYV+ DGSG I G
Sbjct: 293 ---RRLTESNGIDTSPSYSPDGRQIVFESDRDG-----AQRLYVMNADGSGAHPISQGGG 344
Query: 534 EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR 593
S V +S G+++ FT G QF + V+K DGSG R
Sbjct: 345 SYSTPV---------WSPRGDYIAFTEQTGG----------QFL----IGVMKPDGSGER 381
Query: 594 RLTWNGYENGTPAWHPGNQL 613
LT G+ N P W P ++
Sbjct: 382 VLT-EGFHNEGPTWAPNGRV 400
>gi|84497170|ref|ZP_00995992.1| WD40-like Beta Propeller protein [Janibacter sp. HTCC2649]
gi|84382058|gb|EAP97940.1| WD40-like Beta Propeller protein [Janibacter sp. HTCC2649]
Length = 352
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 86/180 (47%), Gaps = 20/180 (11%)
Query: 437 NNAFPSCSPDGKFLVFRSGR------SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS 490
+N++ + SPDG L F S R K +F + A +G D+ Q+T+ + P+
Sbjct: 75 DNSWAAWSPDGTRLAFDSSRLAPEANGDLKEIFTM-APDGT---DVHQVTNLGFFAGQPT 130
Query: 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS 550
WSP G IAF+++ D + +Y I PDG+GL RI VA P G V ++ FS
Sbjct: 131 WSPDGRWIAFTTD--GGDYPTSQGIYAIHPDGTGLHRI-VALPAGPRSV---WLDAPRFS 184
Query: 551 ADGEWLLFT-ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
DG L +T G P SW + L+ V +DG+ R++ G + G W P
Sbjct: 185 PDGSRLAYTFFQGGKPTRSPWSWKGETSA---LWTVGVDGANARQVVAPGQKVGDADWSP 241
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 21/119 (17%)
Query: 478 QLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD-NVEAFSLYVIKPDGSGLRRIHVAGPEGS 536
++TDG + ++ +WSP G +AF S+R P+ N + ++ + PDG+ + ++ G
Sbjct: 68 KITDGDFDNSWAAWSPDGTRLAFDSSRLAPEANGDLKEIFTMAPDGTDVHQVTNLG---- 123
Query: 537 GDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL 595
+S DG W+ FT + G + +Y + DG+GL R+
Sbjct: 124 -----FFAGQPTWSPDGRWIAFTTDGG-----------DYPTSQGIYAIHPDGTGLHRI 166
>gi|456352847|dbj|BAM87292.1| TolB protein [Agromonas oligotrophica S58]
Length = 441
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NLFV+D + +LTD P IDT P +SP G + F
Sbjct: 258 PRFSPDGQRIILSLQQGGNSNLFVMDLRSRTTT----RLTDTPAIDTSPCYSPDGSQLCF 313
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ G +RI EGS + +S G+++ FT
Sbjct: 314 ESDRGGKPQI-----YVMSASGGSAQRISFG--EGS-------YSTPVWSPRGDYIAFTK 359
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G A + ++K DGSG R LT G+ N P + P ++
Sbjct: 360 QGGGQFA--------------IGIMKTDGSGERILT-AGFHNEGPTFSPNGRV 397
>gi|126737227|ref|ZP_01752962.1| translocation protein TolB precursor [Roseobacter sp. SK209-2-6]
gi|126721812|gb|EBA18515.1| translocation protein TolB precursor [Roseobacter sp. SK209-2-6]
Length = 445
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 105/246 (42%), Gaps = 34/246 (13%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDR--TAFYNSWSPTEKHVIYTST 392
P FSP G +++ I + +R L D+ F ++P + V+Y+ T
Sbjct: 216 PRFSPTGDRVLYTSYESGFPQIHVLDVGRVQRRVLSADQGIMTFAPRFAPDGRTVVYSQT 275
Query: 393 GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452
++ T+ IA + +R+ + I T PS SPDG +VF
Sbjct: 276 AG-GNTDLFTMDIA----------NGSRKRLTSAPSIETA--------PSFSPDGSQIVF 316
Query: 453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA 512
S RSG + L+V+ A GE R+++ G P WSP+GDLIAF+
Sbjct: 317 ESDRSGSQQLYVMPASGGE----ARRISFGKGRYGTPVWSPRGDLIAFTKQSKG-----R 367
Query: 513 FSLYVIKPDGSGLRRIHVA----GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAE 568
F + V++ DGS R + + GP S + A+G LL++ ++ +
Sbjct: 368 FHIGVMRTDGSEERLLTASFLDEGPSWSPNGRVIMFTRETQGANGRALLYSVDILGRNLK 427
Query: 569 PVSWPN 574
PV P+
Sbjct: 428 PVRTPD 433
>gi|146276614|ref|YP_001166773.1| translocation protein TolB [Rhodobacter sphaeroides ATCC 17025]
gi|166229985|sp|A4WQ04.1|TOLB_RHOS5 RecName: Full=Protein TolB; Flags: Precursor
gi|145554855|gb|ABP69468.1| TolB, N-terminal domain protein [Rhodobacter sphaeroides ATCC
17025]
Length = 444
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 34/182 (18%)
Query: 433 EETGNNAF-PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491
E+ G F P +PDG+ + F + G+ +++ LD +G RQLT+ P I+T PS+
Sbjct: 251 EQPGTMTFAPRFAPDGRTVAFSLEQGGNTDIYTLDTASGTR----RQLTNSPSIETAPSY 306
Query: 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSA 551
SP G I F S+R LY++ G RRI G+G R +S
Sbjct: 307 SPDGSQIVFESDRSGGQQ-----LYIMPAGGGEPRRIS----NGAG-----RYGTPVWSP 352
Query: 552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGN 611
G+ + FT Q Q + V++ DGS R LT + + G P W P
Sbjct: 353 RGDLIAFT--------------KQHQGRFHIGVMRTDGSEERLLTASFLDEG-PTWAPNG 397
Query: 612 QL 613
++
Sbjct: 398 RV 399
>gi|92118972|ref|YP_578701.1| translocation protein TolB [Nitrobacter hamburgensis X14]
gi|118574587|sp|Q1QHQ6.1|TOLB_NITHX RecName: Full=Protein TolB; Flags: Precursor
gi|91801866|gb|ABE64241.1| TolB-like protein [Nitrobacter hamburgensis X14]
Length = 450
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 80/173 (46%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P +PDG+ ++ + G+ NLFV+D + +LTD P IDT PS+SP G I F
Sbjct: 267 PRFAPDGQRIIMSLQQGGNSNLFVMDLRSKSTT----RLTDTPAIDTSPSYSPDGGRICF 322
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ G +RI EGS + +S G+++ FT
Sbjct: 323 ESDRGGRPQI-----YVMGATGGAAQRISFG--EGS-------YSTPVWSPRGDYIAFTK 368
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + ++K DGSG R LT +G+ N P + P ++
Sbjct: 369 QGGG----------QF----SIGIIKPDGSGERILT-SGFHNEGPTFAPNGRV 406
>gi|430004581|emb|CCF20380.1| Protein tolB precursor [Rhizobium sp.]
Length = 434
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 78/171 (45%), Gaps = 36/171 (21%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR-QLTDGPWIDTMPSWSPKGDLIA 499
PS SPDG +VF S R G + L+V+ A + +G R DG + + P WSP+GDLIA
Sbjct: 295 PSYSPDGSRIVFESDRGGRQQLYVMGA---DGSGQTRISFGDGSY--STPVWSPRGDLIA 349
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL-F 558
F+ FS+ V+KPDGSG RI G G ++ +G L+ F
Sbjct: 350 FTKQSGG-----KFSIGVMKPDGSG-ERILTTGFHNEGP---------TWAPNGRVLMFF 394
Query: 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
N GA + LY + L G +++ Y + PAW P
Sbjct: 395 RQNAGAGGPQ-------------LYSIDLTGYNEQQIKTPAYAS-DPAWSP 431
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 77/173 (44%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + +LT+ IDT PS+SP G I F
Sbjct: 251 PRFSPDGQKVIMSLQQEGNSNIYTMDLRSRT----TTRLTNTAAIDTSPSYSPDGSRIVF 306
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LYV+ DGSG RI +GS + +S G+ + FT
Sbjct: 307 ESDRGGRQQ-----LYVMGADGSGQTRISFG--DGS-------YSTPVWSPRGDLIAFTK 352
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT G+ N P W P ++
Sbjct: 353 QSGGKFS--------------IGVMKPDGSGERILT-TGFHNEGPTWAPNGRV 390
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query: 34 FHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFH 93
F+ +LT+ I +F + Q + ++S PR+Y + + + E++ + P F
Sbjct: 192 FNVRQLTNSKDIVLTPRFSPNR-QEVTYMSFEGDQPRVYLLQLETGQREVVGNFPGMTFA 250
Query: 94 DRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKF 153
R K+ E S +Y+ DL++ TRLT +D SPS S G
Sbjct: 251 PRFSPDGQKVIMSLQQE-------GNSNIYTMDLRSRTTTRLTNTAAIDTSPSYSPDGSR 303
Query: 154 IAVAS 158
I S
Sbjct: 304 IVFES 308
>gi|339502785|ref|YP_004690205.1| protein TolB [Roseobacter litoralis Och 149]
gi|338756778|gb|AEI93242.1| protein TolB precursor [Roseobacter litoralis Och 149]
Length = 443
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 13/138 (9%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG +VF S RSG + L+V+ A GE R+++ GP P WSP+GDL+AF
Sbjct: 303 PSYSPDGTQIVFESDRSGSQQLYVMPASGGE----ARRISFGPGRYGTPVWSPRGDLVAF 358
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA----GPEGSGDVDRERINHVCFSADGEWL 556
+ N F + V++ DGS R + + GP S + + A G
Sbjct: 359 TKQ-----NAGRFHIGVMRLDGSEERLLTASFLDEGPTWSPNGRVIMFSRETQGAQGRAT 413
Query: 557 LFTANLGAVMAEPVSWPN 574
L++ ++ PV P
Sbjct: 414 LYSVDITGRNLRPVRTPE 431
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 35/189 (18%)
Query: 428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT 487
+ L +E + P +PDG+ +VF + G+ +++ ++ VNG G +LT P I+T
Sbjct: 246 RALESQEGTMSFAPRFAPDGETIVFSLSQGGNTDIYRMN-VNG---GPATRLTAAPSIET 301
Query: 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV 547
PS+SP G I F S+R LYV+ G RRI GP R
Sbjct: 302 APSYSPDGTQIVFESDRSGSQQ-----LYVMPASGGEARRISF-GP--------GRYGTP 347
Query: 548 CFSADGEWLLFTA-NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPA 606
+S G+ + FT N G +F + V++LDGS R LT + + G P
Sbjct: 348 VWSPRGDLVAFTKQNAG-----------RFH----IGVMRLDGSEERLLTASFLDEG-PT 391
Query: 607 WHPGNQLDL 615
W P ++ +
Sbjct: 392 WSPNGRVIM 400
>gi|406706635|ref|YP_006756988.1| tol-pal system beta propeller repeat protein TolB [alpha
proteobacterium HIMB5]
gi|406652411|gb|AFS47811.1| tol-pal system beta propeller repeat protein TolB [alpha
proteobacterium HIMB5]
Length = 448
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 56/88 (63%), Gaps = 9/88 (10%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDGK++ F S RSG++ ++++D+ NG+ ++++++ G + P WSP+GDLIAF
Sbjct: 303 PSYSPDGKYICFNSDRSGYQQIYIMDS-NGK---NVKRISFGKGLYGTPVWSPRGDLIAF 358
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
+ F + V++ DG+G R +
Sbjct: 359 TKLHKG-----KFYIGVMRTDGTGERLL 381
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 43/196 (21%)
Query: 425 CDVKILTKEETGN----NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT 480
D++ T+E G+ P SPDGK ++ + G+ +++ +D N + ++T
Sbjct: 239 LDIETGTQEVVGDFPGMTFAPRFSPDGKKIIMSFAKDGNSDIYTMDLENRI----VDKIT 294
Query: 481 DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDV 539
+ P IDT PS+SP G I F+S+R + Y++ +G ++RI G G+
Sbjct: 295 NHPSIDTSPSYSPDGKYICFNSDRSGYQQI-----YIMDSNGKNVKRISFGKGLYGTP-- 347
Query: 540 DRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLY--VVKLDGSGLRRLTW 597
+S G+ + FT G Y V++ DG+G R LT
Sbjct: 348 --------VWSPRGDLIAFTK----------------LHKGKFYIGVMRTDGTGERLLTE 383
Query: 598 NGYENGTPAWHPGNQL 613
N Y+ P+W P ++
Sbjct: 384 NYYQEA-PSWSPNGRV 398
>gi|254448714|ref|ZP_05062172.1| Tol-Pal system beta propeller repeat protein TolB [gamma
proteobacterium HTCC5015]
gi|198261722|gb|EDY86009.1| Tol-Pal system beta propeller repeat protein TolB [gamma
proteobacterium HTCC5015]
Length = 442
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 110/292 (37%), Gaps = 79/292 (27%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A +DG T+++ + +WSP H+ Y VSF+
Sbjct: 191 LQVADADGHAPRTVVRSSQPILSPTWSPDGMHLAY------------------VSFR--- 229
Query: 415 SDDNNREEIPCDVKILTKEET------GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV 468
NR+ V + T +E G N P+ SPDG L RSG+ +++VLD
Sbjct: 230 ----NRQAEVFAVNLRTGKEQKLSGFDGINGAPAFSPDGNQLAMALSRSGNPDIYVLDMK 285
Query: 469 NGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSL------------- 515
+ ++Q+T G I+T PSWS GD + ++S R + A S
Sbjct: 286 TRQ----LKQITRGYSIETEPSWSSDGDTLYYTSGRTGSPQIYAVSARGGTPKRVSFEGG 341
Query: 516 ----YVIKPDGSGLRRIH-------VAGPEGSGDV-----DRERINHVCFSADGEWLLFT 559
PDG L +H +A + D+ D + F+ +G+ LL+
Sbjct: 342 YNASAAASPDGRNLAMVHSQRGSYRIAVKDLKSDLFRVLTDGPQDESPSFAPNGQMLLYA 401
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGN 611
G G L V LDG + L + PAW P N
Sbjct: 402 TQKGG--------------KGVLAAVSLDGRVKQELLLTEGDIREPAWSPFN 439
>gi|392965220|ref|ZP_10330640.1| amidohydrolase [Fibrisoma limi BUZ 3]
gi|387846603|emb|CCH52686.1| amidohydrolase [Fibrisoma limi BUZ 3]
Length = 992
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 115/273 (42%), Gaps = 45/273 (16%)
Query: 253 DGKRLAVATRRK-NRNFRHI-----EIYDLTLNPNFHHYNP----------FVSANSEFI 296
DGKR+ ++ R N + + ++ LT N + + YNP +VS +E
Sbjct: 128 DGKRIVFSSDRSGNYDIWQLAVDSGQLTQLTKN-SANEYNPAFSPDGTQLVYVSERTEAP 186
Query: 297 GYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGI 356
G +R TE Q + +P + + P++SPDG + N + +G+
Sbjct: 187 GLYRLDARGTETQL-------MNTPTRL--------AAPAWSPDGTRVFVNAQTKGQSGL 231
Query: 357 KIAKSDGSKRWTLI---KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD 413
+DG L +D F SW +++V YT+ G + + + + + FQ
Sbjct: 232 MAVAADGGNGTMLTPADEDVFPFRVSWLSADEYV-YTADGKLLKRKVGQTGVTAIPFQAT 290
Query: 414 PS-DDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
+ N + D + P+ SPDG+ + F + ++++L N +
Sbjct: 291 VAIARRNYQRKQYDFTTTSPRPVRGIKGPAVSPDGRQIAF----AALGDIWLLTKGNPQ- 345
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH 505
R LT+ P++D P WSP G +AF S+R
Sbjct: 346 ---PRALTNDPYLDAEPVWSPDGSKLAFVSDRQ 375
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 35/186 (18%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNS----WSPTEKHVIYT 390
P++SPDG +VF+ ++ I + G++R L T Y+ WSP K ++++
Sbjct: 79 PAWSPDGNWLVFHAFWDGTYHIWMVNRQGTQRKQLT---TGVYDDREPHWSPDGKRIVFS 135
Query: 391 STGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK--EETGNNAFPSCSPDGK 448
S D S + + ++ D LT+ + + N P+ SPDG
Sbjct: 136 S---------------------DRSGNYDIWQLAVDSGQLTQLTKNSANEYNPAFSPDGT 174
Query: 449 FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD 508
LV+ S R+ L+ LDA G QL + P P+WSP G + ++
Sbjct: 175 QLVYVSERTEAPGLYRLDA-----RGTETQLMNTPTRLAAPAWSPDGTRVFVNAQTKGQS 229
Query: 509 NVEAFS 514
+ A +
Sbjct: 230 GLMAVA 235
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 72/167 (43%), Gaps = 27/167 (16%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDGK +VF S RSG+ +++ L AV+ +G + QLT + P++SP G + +
Sbjct: 123 PHWSPDGKRIVFSSDRSGNYDIWQL-AVD---SGQLTQLTKNSANEYNPAFSPDGTQLVY 178
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIH----VAGPEGSGDVDRERINHVCFSADGEWL 556
S R EA LY + G+ + ++ +A P S D R +N G
Sbjct: 179 VSER-----TEAPGLYRLDARGTETQLMNTPTRLAAPAWSPDGTRVFVNAQTKGQSGLMA 233
Query: 557 LFTANLGAVMAEP---------VSWPNQFQPYGDLYVVKLDGSGLRR 594
+ M P VSW + D YV DG L+R
Sbjct: 234 VAADGGNGTMLTPADEDVFPFRVSWLS-----ADEYVYTADGKLLKR 275
>gi|71728507|gb|EAO30666.1| TolB, N-terminal [Xylella fastidiosa Ann-1]
Length = 474
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 109/284 (38%), Gaps = 57/284 (20%)
Query: 352 LNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410
+ + +A SDG T+++ + WSP K + Y S F+ +++ I
Sbjct: 217 MRYALMVADSDGYNPQTIVRSAEPLLSPDWSPDGKKLAYVS----FEKGGSSIYI----- 267
Query: 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG 470
++I + L G NA PS +PDG + RSG+ ++V+D V+
Sbjct: 268 ----------QDIATGSRELVSSFRGINAAPSFAPDGHRIALSLSRSGNPEIYVMDLVSK 317
Query: 471 EFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530
+ + QLT+ IDT P WS G I F+S+R + Y + G R+
Sbjct: 318 Q----LIQLTNSFGIDTEPVWSSDGKFIYFTSDRGGRPQI-----YKVASVGGAATRVTF 368
Query: 531 AG-----------------PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP 573
G +GSG+V R + + G + T + G++ P P
Sbjct: 369 QGNYNASASVSYDDKKIVVAQGSGNVYRIAMMD---QSSGSTVWNTLSTGSLDESPSFAP 425
Query: 574 NQFQPY--------GDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
N G LY V D +RL + PAW P
Sbjct: 426 NASMVLYAAREGGRGVLYAVSADARVRQRLVSVDSDVREPAWGP 469
>gi|222149663|ref|YP_002550620.1| translocation protein TolB [Agrobacterium vitis S4]
gi|254764836|sp|B9JRY0.1|TOLB_AGRVS RecName: Full=Protein TolB; Flags: Precursor
gi|221736645|gb|ACM37608.1| periplasmic component of the Tol biopolymer transport system
[Agrobacterium vitis S4]
Length = 435
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 55/97 (56%), Gaps = 13/97 (13%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS +PDG+ +VF S R G + L+V+ N + +G R ++ G + P WSP+GDLIAF
Sbjct: 296 PSYAPDGRRIVFESDRGGRQQLYVM---NSDGSGQTR-ISFGEGSYSTPVWSPRGDLIAF 351
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGP 533
+ FS+ V+KPDGSG R + H GP
Sbjct: 352 TKQSGG-----KFSIGVMKPDGSGERLLTTGFHNEGP 383
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 72/173 (41%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + + N++ +D + IDT PS++P G I F
Sbjct: 252 PRFSPDGQRVIMSLQQDANSNIYTMDLRSRTTTRLTSTAA----IDTSPSYAPDGRRIVF 307
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LYV+ DGSG RI EGS + +S G+ + FT
Sbjct: 308 ESDRGGRQQ-----LYVMNSDGSGQTRISFG--EGS-------YSTPVWSPRGDLIAFTK 353
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT G+ N P W P ++
Sbjct: 354 QSGGKFS--------------IGVMKPDGSGERLLT-TGFHNEGPTWAPNGRV 391
>gi|15838495|ref|NP_299183.1| translocation protein TolB [Xylella fastidiosa 9a5c]
gi|9106990|gb|AAF84703.1|AE004009_10 TolB protein precursor [Xylella fastidiosa 9a5c]
Length = 430
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 57/284 (20%)
Query: 352 LNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410
+ + +A SDG T+++ + WSP K + Y S F+ +++ I
Sbjct: 173 MRYALMVADSDGYNPQTIVRSAEPLLSPDWSPDGKKLAYVS----FEKGGSSIYI----- 223
Query: 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG 470
++I + L G NA PS +PDG + RSG+ ++V+D V+
Sbjct: 224 ----------QDIATGSRELVSSFRGINAAPSFAPDGHRIALSLSRSGNPEIYVMDLVSK 273
Query: 471 EFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530
+ + QLT+ IDT P+WS G I F+S+R + Y + G R+
Sbjct: 274 Q----LIQLTNSFGIDTEPAWSSDGKFIYFTSDRGGRPQI-----YKVASVGGTATRVTF 324
Query: 531 AG-----------------PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP 573
G +GSG+V R + + G + T + G++ P P
Sbjct: 325 QGNYNATTSVSYDDKKIVVAQGSGNVYRIAMMD---QSSGSTVWNTLSTGSLDESPSFAP 381
Query: 574 NQFQPY--------GDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
N G LY V D +RL + PAW P
Sbjct: 382 NASMVLYAAREGGRGVLYAVSADARVRQRLVSVDSDVREPAWGP 425
>gi|255262012|ref|ZP_05341354.1| Tol-Pal system beta propeller repeat protein TolB [Thalassiobium
sp. R2A62]
gi|255104347|gb|EET47021.1| Tol-Pal system beta propeller repeat protein TolB [Thalassiobium
sp. R2A62]
Length = 441
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 39/173 (22%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG +VF S RSG + L+++ A GE R+++ G P WSP+GDL+AF
Sbjct: 301 PSFSPDGSQIVFESDRSGTQQLYIMSASGGE----PRRISFGDGRYGTPVWSPRGDLVAF 356
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA----GPEGSGDVDRERINHVCFSADGEWL 556
+ N F + V++ DGS R + + GP +S +G +
Sbjct: 357 TKQ-----NAGRFHIGVMRTDGSEERLLTASFLDEGP--------------TWSPNGRVI 397
Query: 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+FT P LY V + G L+R+T + + P+W P
Sbjct: 398 MFTRETQGADGAPA-----------LYSVDITGRNLKRVTTSNAAS-DPSWGP 438
>gi|344198374|ref|YP_004782700.1| protein tolB [Acidithiobacillus ferrivorans SS3]
gi|343773818|gb|AEM46374.1| Protein tolB [Acidithiobacillus ferrivorans SS3]
Length = 423
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 118/294 (40%), Gaps = 91/294 (30%)
Query: 356 IKIAKSDGSKRWTLIKD-RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A+SDG +++ F WSP + YT+ + + RA + + ++
Sbjct: 177 LLVAESDGWNPHPIVRGIMPVFSPVWSPDNHRLAYTT----YANARAVIYVQDLA----- 227
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
R+ I +I++ P+ SP+G+ L + GH L+V + G+
Sbjct: 228 --TGRRQSIAPGGEIVSA--------PAFSPNGEELAYARSSGGHTELYVANLRTGQR-- 275
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR------------------------------ 504
R+LT+ I+T P+WSP G I F S+R
Sbjct: 276 --RKLTNDDAINTSPTWSPDGSQIIFVSDRAGGPQIYGMNASGGGIHRLSYAGGYNAGPV 333
Query: 505 HNP-DNVEAF--------SLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW 555
++P N AF +L V+ PDGSG+R + + G+ D H F+ +G+
Sbjct: 334 YSPAGNAIAFIHRTAGVYALAVMNPDGSGVRVL-----DAQGNCD-----HPSFAGNGQM 383
Query: 556 LLFTANLGA--VMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
+L+ + G V+AE V LDG + L N E+ PAW
Sbjct: 384 ILYGTHRGGHKVLAE----------------VSLDGKTMAILHSNAGEDSQPAW 421
>gi|262277490|ref|ZP_06055283.1| Tol-Pal system beta propeller repeat protein TolB [alpha
proteobacterium HIMB114]
gi|262224593|gb|EEY75052.1| Tol-Pal system beta propeller repeat protein TolB [alpha
proteobacterium HIMB114]
Length = 445
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 37/175 (21%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ R G+ +++ +D + + Q+T P IDT PS+SP G I F
Sbjct: 256 PRFSPDGRKIIMSFARDGNSDIYTMDIESRR----VEQITSNPAIDTSPSFSPDGRFIVF 311
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+S+R + Y ++ DG G++RI G G +S G+ + FT
Sbjct: 312 NSDRSGFQQI-----YTMRSDGRGVKRIS----RGKG-----LYGTPVWSPRGDLIAFTK 357
Query: 561 NLGAVMAEPVSWPNQFQPYGDLY--VVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G Y V++ DG+G R LT N Y+ P+W P ++
Sbjct: 358 ----------------IHKGKFYIGVMRTDGTGERLLTQNFYQEA-PSWSPNGRV 395
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 13/114 (11%)
Query: 417 DNNREEIPCDVKILTKEETGNN----AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
D N + D++ E+ +N PS SPDG+F+VF S RSG + ++ + + +G
Sbjct: 272 DGNSDIYTMDIESRRVEQITSNPAIDTSPSFSPDGRFIVFNSDRSGFQQIYTMRS-DGR- 329
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526
+++++ G + P WSP+GDLIAF+ F + V++ DG+G R
Sbjct: 330 --GVKRISRGKGLYGTPVWSPRGDLIAFTKIHKG-----KFYIGVMRTDGTGER 376
>gi|427409563|ref|ZP_18899765.1| tol-Pal system beta propeller repeat protein TolB [Sphingobium
yanoikuyae ATCC 51230]
gi|425711696|gb|EKU74711.1| tol-Pal system beta propeller repeat protein TolB [Sphingobium
yanoikuyae ATCC 51230]
Length = 444
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 103/248 (41%), Gaps = 50/248 (20%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGS-------------FPSFSPDG 341
Y R GES S I ++ P + VK L ++ +G+ P FSPD
Sbjct: 164 YARLSGESPFFDSRIAYIAESGPKDNRVKRLAIMDSDGANHRFITNGQSIALTPRFSPDY 223
Query: 342 GLIVFNHDFELNAGIKIAKSD---GSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQS 398
IV+ L + ++I D G +R + T F WSP ++++++ +
Sbjct: 224 KSIVYVS--YLGSRVRIYVYDIGTGQQRLVTESNNTTFAPRWSPDGRNILFS------MA 275
Query: 399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG 458
I RVS Q + G + S SPDG+ +VF S RSG
Sbjct: 276 VSGNTDIYRVSAQ-------------GGAPVRLTNSPGIDVGGSYSPDGRQIVFESDRSG 322
Query: 459 HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVI 518
+ ++V++A + R+++ G P WSP+GDLIAF+ + F + V+
Sbjct: 323 GQQIYVMNA----DGSNQRRISHGGGRYATPEWSPRGDLIAFTKLSGD------FKIAVM 372
Query: 519 KPDGSGLR 526
P G R
Sbjct: 373 TPSGDNER 380
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 100/260 (38%), Gaps = 56/260 (21%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ I SDG+ R+ A +SP K ++Y S + R + +
Sbjct: 194 LAIMDSDGANHRFITNGQSIALTPRFSPDYKSIVYVS----YLGSRVRIYV--------- 240
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+I + L E P SPDG+ ++F SG+ +++ + A G
Sbjct: 241 ------YDIGTGQQRLVTESNNTTFAPRWSPDGRNILFSMAVSGNTDIYRVSAQGG---A 291
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
+R LT+ P ID S+SP G I F S+R + YV+ DGS RRI G
Sbjct: 292 PVR-LTNSPGIDVGGSYSPDGRQIVFESDRSGGQQI-----YVMNADGSNQRRISHGG-- 343
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LR 593
R +S G+ + FT + GD + + SG
Sbjct: 344 -------GRYATPEWSPRGDLIAFT-----------------KLSGDFKIAVMTPSGDNE 379
Query: 594 RLTWNGYENGTPAWHPGNQL 613
R+ NG+++ P W P ++
Sbjct: 380 RILTNGWQDEQPTWSPNGRV 399
>gi|407715737|ref|YP_006837017.1| translocation protein TolB [Cycloclasticus sp. P1]
gi|407256073|gb|AFT66514.1| translocation protein TolB [Cycloclasticus sp. P1]
Length = 432
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 86/368 (23%), Positives = 142/368 (38%), Gaps = 80/368 (21%)
Query: 294 EFIGYHRFRGESTEGQSTIP----HLEPVASPVKELRMLRLNGSFPSFSPDGGLI--VFN 347
+F + ++GE G S IP +L VA + +L L G +FS + +
Sbjct: 117 QFQLFDVYKGEQLTGFS-IPANTANLRGVAHRISDLIYENLTGQQGAFSTRMAYVTSMMG 175
Query: 348 HDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATV--Q 404
+ + I++A +DG T++ + SWSP + Y S ++ R+++ Q
Sbjct: 176 ANGKQEYKIQVADADGYGAKTIVTSTEPLMSPSWSPRGDKISYVS----YEGRRSSIYTQ 231
Query: 405 IARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFV 464
R RE++ + G N PS SPDG L + G ++++
Sbjct: 232 TLRT---------GQREKL--------RSFKGINGAPSWSPDGSQLALTLSKDGSADIYI 274
Query: 465 LDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG 524
+ + F R+LT IDT P WSP G I F+S+R + Y I G
Sbjct: 275 YNVITRSF----RRLTRSYAIDTEPDWSPDGRHIIFTSDRGGKPQI-----YRISASGGQ 325
Query: 525 LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYV 584
R+ G + +S DG+++ VM V+ G +
Sbjct: 326 AARVTFEGSYNA---------RASYSPDGKYI--------VMVHRVN--------GQYRI 360
Query: 585 VKLD-GSGLRRLTWNGYENGTPAWHP-----------GNQLDLGKLRLEDDIGDKLR--- 629
LD SG + NG + +P++ P G + L + + + KLR
Sbjct: 361 ATLDLKSGFTNILTNGSLDESPSYAPNGSMILYSTNDGLKSILAAVSSDGKVRQKLRLQE 420
Query: 630 GQFDEPLW 637
G+ EP W
Sbjct: 421 GEVREPAW 428
>gi|338999587|ref|ZP_08638229.1| translocation protein TolB [Halomonas sp. TD01]
gi|338763485|gb|EGP18475.1| translocation protein TolB [Halomonas sp. TD01]
Length = 430
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 82/180 (45%), Gaps = 31/180 (17%)
Query: 355 GIKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD 413
G+ +A +DG + + L D+ +WSP + + Y S F++ER + I
Sbjct: 180 GLYVADADGRNSKQILTSDQPIMSPAWSPDGRKLAYVS----FETERPAIYI-------- 227
Query: 414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
+++ +I G N P+ SPDG+ + + G +++LD +N N
Sbjct: 228 -------QDVSTGQRIQATSFEGINGAPTWSPDGRRIAMSLSKDGQPEIYILD-IN---N 276
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG-LRRIHVAG 532
+ ++T IDT P+W+P G + F+S+R + +SL GSG +RI G
Sbjct: 277 RSVERITQNSSIDTEPAWAPDGRSLIFTSDRSGGPQIYEYSL------GSGEAKRITFTG 330
>gi|182677268|ref|YP_001831414.1| beta-propeller repeat-containing to-pal system protein TolB
[Beijerinckia indica subsp. indica ATCC 9039]
gi|182633151|gb|ACB93925.1| Tol-Pal system beta propeller repeat protein TolB [Beijerinckia
indica subsp. indica ATCC 9039]
Length = 448
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 33/169 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ +V + NLF +D + + +L+D IDT PS+SP G I F
Sbjct: 265 PRFSPDGQKIVMSLSQGASSNLFTMDLRSR----NTTRLSDSSSIDTSPSYSPDGTQIVF 320
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + Y++ G G RR+ G G R + +S G+++ FT
Sbjct: 321 ESDRGGTQQI-----YMMSAAGGGTRRVSF----GDG-----RYSTPVWSPRGDYIAFTR 366
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G+ + V+K DGSG R LT G+ N P W P
Sbjct: 367 QKGSSFG--------------IGVMKPDGSGERILT-EGFHNEGPTWAP 400
>gi|32699720|sp|Q9PC84.2|TOLB_XYLFA RecName: Full=Protein TolB; Flags: Precursor
Length = 439
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 57/284 (20%)
Query: 352 LNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410
+ + +A SDG T+++ + WSP K + Y S F+ +++ I
Sbjct: 182 MRYALMVADSDGYNPQTIVRSAEPLLSPDWSPDGKKLAYVS----FEKGGSSIYI----- 232
Query: 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG 470
++I + L G NA PS +PDG + RSG+ ++V+D V+
Sbjct: 233 ----------QDIATGSRELVSSFRGINAAPSFAPDGHRIALSLSRSGNPEIYVMDLVSK 282
Query: 471 EFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530
+ + QLT+ IDT P+WS G I F+S+R + Y + G R+
Sbjct: 283 Q----LIQLTNSFGIDTEPAWSSDGKFIYFTSDRGGRPQI-----YKVASVGGTATRVTF 333
Query: 531 AG-----------------PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP 573
G +GSG+V R + + G + T + G++ P P
Sbjct: 334 QGNYNATTSVSYDDKKIVVAQGSGNVYRIAMMD---QSSGSTVWNTLSTGSLDESPSFAP 390
Query: 574 NQFQPY--------GDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
N G LY V D +RL + PAW P
Sbjct: 391 NASMVLYAAREGGRGVLYAVSADARVRQRLVSVDSDVREPAWGP 434
>gi|241662341|ref|YP_002980701.1| translocation protein TolB [Ralstonia pickettii 12D]
gi|240864368|gb|ACS62029.1| Tol-Pal system beta propeller repeat protein TolB [Ralstonia
pickettii 12D]
Length = 434
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 112/287 (39%), Gaps = 70/287 (24%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG+ + L + SWSP V Y S F+S++ V +
Sbjct: 182 LQISDSDGANPQIALTSNEPIISPSWSPDGTKVAYVS----FESKKPVVYV--------- 228
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++ + + + GNN+ P+ SPDG+ + R G+ +++ VN + +G
Sbjct: 229 ------HDLVAGRRTVISNQKGNNSAPAWSPDGRHVAVSLSRDGNTQVYL---VNADGSG 279
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY------------------ 516
+R+L+ IDT PS+SP G I F+S+R + S+
Sbjct: 280 -LRRLSRSSAIDTEPSFSPDGRYIYFTSDRGGAPQIYRMSVDGEEAGAAQRVTFKGNYNT 338
Query: 517 --VIKPDGSGLRRIHVAGPE--------GSGDV----DRERINHVCFSADGEWLLFTANL 562
+ PDG L I G +GDV D F+A+G+++L+ +
Sbjct: 339 SPRVSPDGKLLAYISRVGGAFRLYTQDLSNGDVNALTDTSNDESPSFAANGKFILYATRV 398
Query: 563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G L V DG + L+ E PAW P
Sbjct: 399 GGKSV--------------LAAVSTDGRTRQVLSLQAGEVREPAWGP 431
Score = 46.2 bits (108), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 24/174 (13%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIY 389
N S P++SPDG + + + N + + +DGS L + S+SP +++ +
Sbjct: 245 NNSAPAWSPDGRHVAVSLSRDGNTQVYLVNADGSGLRRLSRSSAIDTEPSFSPDGRYIYF 304
Query: 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGN-NAFPSCSPDGK 448
TS QI R+S + EE ++ K GN N P SPDGK
Sbjct: 305 TS------DRGGAPQIYRMSV--------DGEEAGAAQRVTFK---GNYNTSPRVSPDGK 347
Query: 449 FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
L + S G L+ D NGD+ LTD D PS++ G I +++
Sbjct: 348 LLAYISRVGGAFRLYTQDLS----NGDVNALTDTSN-DESPSFAANGKFILYAT 396
>gi|399991802|ref|YP_006572042.1| protein TolB [Phaeobacter gallaeciensis DSM 17395 = CIP 105210]
gi|398656357|gb|AFO90323.1| putative protein TolB [Phaeobacter gallaeciensis DSM 17395 = CIP
105210]
Length = 437
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 101/246 (41%), Gaps = 34/246 (13%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDR--TAFYNSWSPTEKHVIYTST 392
P FSP G +++ I + +R L D +F ++P + V+Y+
Sbjct: 208 PRFSPTGDRVLYTSYESGFPQIHVLDVGSVQRRVLSADNGIMSFAPRFAPDGRTVVYS-- 265
Query: 393 GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452
QS+ I ++ D R + I T PS SPDG +VF
Sbjct: 266 ----QSQGGNTDIFTMNI-----DTGARTRLTSAPSIETA--------PSFSPDGSQIVF 308
Query: 453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA 512
S RSG L+V+ A GE R+++ G P WSP+GD+IAF+ N
Sbjct: 309 ESDRSGAPQLYVMAATGGE----ARRISFGAGRYGTPVWSPRGDMIAFTKQ-----NKGR 359
Query: 513 FSLYVIKPDGSGLRRIHVA----GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAE 568
F + V++ DGS R + + GP S + A G LL++ ++ +
Sbjct: 360 FHIGVMRTDGSEERLLTASFLDEGPTWSPNGRVIMFTRETQGASGRALLYSVDVSGRNLK 419
Query: 569 PVSWPN 574
PV P+
Sbjct: 420 PVRTPD 425
>gi|194290407|ref|YP_002006314.1| translocation protein tolb [Cupriavidus taiwanensis LMG 19424]
gi|193224242|emb|CAQ70251.1| colicin transporter component [Cupriavidus taiwanensis LMG 19424]
Length = 457
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 95/209 (45%), Gaps = 35/209 (16%)
Query: 356 IKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ I+ SDG + + L + SWSP V Y S F++++ V +
Sbjct: 206 LLISDSDGQNAQVALTSNEPIISPSWSPDGARVAYVS----FEAKKPVVYV--------- 252
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++ + L + GNN+ PS SPDG+ L R G+ ++ VN + +G
Sbjct: 253 ------HDLASGKRTLVSNQKGNNSAPSWSPDGRHLALALSRDGNTQVY---QVNADGSG 303
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
IR+L+ IDT P +SP G I F+S+R + + + +G G +R+ +
Sbjct: 304 -IRRLSRSSAIDTEPQYSPDGKSIYFTSDRGGAPQI--YRMPASGEEGGGAQRVTF---K 357
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLG 563
GS +V RI S DG++L + + G
Sbjct: 358 GSYNVS-PRI-----SPDGKYLAYISRAG 380
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 29/169 (17%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG + + S + ++V D +G+ +++ ++ PSWSP G +A
Sbjct: 229 PSWSPDGARVAYVSFEAKKPVVYVHDLASGKRT----LVSNQKGNNSAPSWSPDGRHLAL 284
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ +R V Y + DGSG+RR+ S +D E +S DG+ + FT+
Sbjct: 285 ALSRDGNTQV-----YQVNADGSGIRRLSR-----SSAIDTE----PQYSPDGKSIYFTS 330
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ G P ++ + +G G +R+T+ G N +P P
Sbjct: 331 DRGGA-------PQIYR----MPASGEEGGGAQRVTFKGSYNVSPRISP 368
>gi|402773801|ref|YP_006593338.1| protein tolB [Methylocystis sp. SC2]
gi|401775821|emb|CCJ08687.1| Protein tolB [Methylocystis sp. SC2]
Length = 439
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 72/169 (42%), Gaps = 33/169 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + NL+ +D + +LTD IDT PS+SP G I F
Sbjct: 256 PRFSPDGQKIIMSLAQGSTTNLYTMDLRSRT----TMRLTDTGAIDTAPSYSPDGARIVF 311
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ G +RI G R + +S G+++ FT
Sbjct: 312 ESDRGGSQQI-----YVMGAHGGEAKRISFGG---------GRYSTPVWSPKGDYIAFTK 357
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G A + V+K+DGSG R LT G+ N P W P
Sbjct: 358 QNGGNFA--------------IGVMKIDGSGERILT-EGFHNEGPTWAP 391
>gi|309780840|ref|ZP_07675581.1| Tol-Pal system beta propeller repeat protein TolB [Ralstonia sp.
5_7_47FAA]
gi|404394254|ref|ZP_10986058.1| protein tolB [Ralstonia sp. 5_2_56FAA]
gi|308920522|gb|EFP66178.1| Tol-Pal system beta propeller repeat protein TolB [Ralstonia sp.
5_7_47FAA]
gi|348613389|gb|EGY62979.1| protein tolB [Ralstonia sp. 5_2_56FAA]
Length = 434
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 112/287 (39%), Gaps = 70/287 (24%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG+ + L + SWSP V Y S F+S++ V +
Sbjct: 182 LQISDSDGANPQIALTSNEPIISPSWSPDGTKVAYVS----FESKKPVVYV--------- 228
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++ + + + GNN+ P+ SPDG+ + R G+ +++ VN + +G
Sbjct: 229 ------HDLVAGRRTVISNQKGNNSAPAWSPDGRHVAVSLSRDGNTQVYL---VNADGSG 279
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY------------------ 516
+R+L+ IDT PS+SP G I F+S+R + S+
Sbjct: 280 -LRRLSRSSAIDTEPSFSPDGRYIYFTSDRGGAPQIYRMSVDGEEAGAAQRVTFKGNYNT 338
Query: 517 --VIKPDGSGLRRIHVAGPE--------GSGDV----DRERINHVCFSADGEWLLFTANL 562
+ PDG L I G +GDV D F+A+G+++L+ +
Sbjct: 339 SPRVSPDGKLLAYISRVGGAFRLYTQDLSNGDVNALTDTSNDESPSFAANGKFILYATRV 398
Query: 563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G L V DG + L+ E PAW P
Sbjct: 399 GGKSV--------------LAAVSTDGRTRQVLSLQAGEVREPAWGP 431
Score = 46.2 bits (108), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 24/174 (13%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIY 389
N S P++SPDG + + + N + + +DGS L + S+SP +++ +
Sbjct: 245 NNSAPAWSPDGRHVAVSLSRDGNTQVYLVNADGSGLRRLSRSSAIDTEPSFSPDGRYIYF 304
Query: 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGN-NAFPSCSPDGK 448
TS QI R+S + EE ++ K GN N P SPDGK
Sbjct: 305 TS------DRGGAPQIYRMSV--------DGEEAGAAQRVTFK---GNYNTSPRVSPDGK 347
Query: 449 FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
L + S G L+ D NGD+ LTD D PS++ G I +++
Sbjct: 348 LLAYISRVGGAFRLYTQDLS----NGDVNALTDTSN-DESPSFAANGKFILYAT 396
>gi|317051744|ref|YP_004112860.1| TolB protein [Desulfurispirillum indicum S5]
gi|316946828|gb|ADU66304.1| TolB protein [Desulfurispirillum indicum S5]
Length = 452
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 33/179 (18%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G N SPDGK++ + +G N+++L + + RQLT ID P+WSP G
Sbjct: 262 GTNTGGIPSPDGKYIAVTASHNGISNIYLLHSDGRMY----RQLTRHWSIDVSPAWSPDG 317
Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW 555
+ IAF S+R V Y+I + R+ G R ++ V +S DG +
Sbjct: 318 NFIAFVSDRPGSPQV-----YMINLRTDEITRVTYEG--------RYNVSPV-WSPDGNY 363
Query: 556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW-HPGNQL 613
+ +T+ + E N+F ++Y+V+ DG +RLT+N N TP W GN L
Sbjct: 364 IAYTS-----LEE-----NKF----NIYIVEKDGYNPQRLTYNSGHNETPRWSRDGNYL 408
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 32/167 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG F+ F S R G +++++ E I ++T + P WSP G+ IA+
Sbjct: 311 PAWSPDGNFIAFVSDRPGSPQVYMINLRTDE----ITRVTYEGRYNVSPVWSPDGNYIAY 366
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+S N F++Y+++ DG +R+ SG + R +S DG +LLFT+
Sbjct: 367 TSLEEN-----KFNIYIVEKDGYNPQRLTY----NSGHNETPR-----WSRDGNYLLFTS 412
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
N +F+ LYV+ G+ +RL N P W
Sbjct: 413 NRTG----------EFK----LYVMDRTGTFQKRLKDGPANNNMPDW 445
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 30/180 (16%)
Query: 338 SPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGP-- 394
SPDG I + I + SDG L + + + +WSP + + S P
Sbjct: 270 SPDGKYIAVTASHNGISNIYLLHSDGRMYRQLTRHWSIDVSPAWSPDGNFIAFVSDRPGS 329
Query: 395 --IFQSERATVQIARVSFQ----LDP--SDDNNR------EEIPCDVKILTKE------- 433
++ T +I RV+++ + P S D N EE ++ I+ K+
Sbjct: 330 PQVYMINLRTDEITRVTYEGRYNVSPVWSPDGNYIAYTSLEENKFNIYIVEKDGYNPQRL 389
Query: 434 --ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491
+G+N P S DG +L+F S R+G L+V+D G F ++L DGP + MP W
Sbjct: 390 TYNSGHNETPRWSRDGNYLLFTSNRTGEFKLYVMDRT-GTFQ---KRLKDGPANNNMPDW 445
>gi|110679376|ref|YP_682383.1| translocation protein TolB [Roseobacter denitrificans OCh 114]
gi|118574597|sp|Q167Z6.1|TOLB_ROSDO RecName: Full=Protein TolB; Flags: Precursor
gi|109455492|gb|ABG31697.1| TolB protein, putative [Roseobacter denitrificans OCh 114]
Length = 443
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG +VF S RSG + L+V+ A NG G+ R+++ GP P WSP+GDL+AF
Sbjct: 303 PSYSPDGTQIVFESDRSGSQQLYVMPA-NG---GEARRISFGPGRYGTPVWSPRGDLVAF 358
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA----GPEGSGDVDRERINHVCFSADGEWL 556
+ N F + V++ DGS R + + GP S + + A G
Sbjct: 359 TKQ-----NAGRFHIGVMRLDGSEERLLTASFLDEGPTWSPNGRVIMFSRETQGAQGRAT 413
Query: 557 LFTANLGAVMAEPVSWPN 574
L++ ++ PV P
Sbjct: 414 LYSVDITGRNLRPVRTPE 431
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 35/187 (18%)
Query: 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489
L +E + P +PDG+ +VF + G+ +++ ++ VNG G +LT P I+T P
Sbjct: 248 LESQEGTMSFAPRFAPDGQTIVFSLSQGGNTDIYRMN-VNG---GSATRLTSAPSIETAP 303
Query: 490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCF 549
S+SP G I F S+R LYV+ +G RRI GP R +
Sbjct: 304 SYSPDGTQIVFESDRSGSQQ-----LYVMPANGGEARRISF-GP--------GRYGTPVW 349
Query: 550 SADGEWLLFTA-NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWH 608
S G+ + FT N G +F + V++LDGS R LT + + G P W
Sbjct: 350 SPRGDLVAFTKQNAG-----------RFH----IGVMRLDGSEERLLTASFLDEG-PTWS 393
Query: 609 PGNQLDL 615
P ++ +
Sbjct: 394 PNGRVIM 400
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 78/205 (38%), Gaps = 29/205 (14%)
Query: 335 PSFSPDGGLIVFNHDFELNAGI-KIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTG 393
P F+PDG IVF+ N I ++ + GS S+SP +
Sbjct: 259 PRFAPDGQTIVFSLSQGGNTDIYRMNVNGGSATRLTSAPSIETAPSYSPDGTQI------ 312
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453
+F+S+R+ Q + P++ I G P SP G + F
Sbjct: 313 -VFESDRSGSQ----QLYVMPANGGEARRISFG--------PGRYGTPVWSPRGDLVAFT 359
Query: 454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF 513
+G ++ V+ +G +L ++D P+WSP G +I FS R
Sbjct: 360 KQNAGRFHIGVM-----RLDGSEERLLTASFLDEGPTWSPNGRVIMFS--RETQGAQGRA 412
Query: 514 SLYVIKPDGSGLRRIHVAGPEGSGD 538
+LY + G LR + PEG D
Sbjct: 413 TLYSVDITGRNLRPVRT--PEGGSD 435
>gi|402848941|ref|ZP_10897187.1| tolB protein precursor protein [Rhodovulum sp. PH10]
gi|402500817|gb|EJW12483.1| tolB protein precursor protein [Rhodovulum sp. PH10]
Length = 444
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 107/259 (41%), Gaps = 53/259 (20%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ + DG+ R+ D +SPT + + Y S G QSE +V + V
Sbjct: 196 LALMDQDGANVRYLTRGDDLVLTPRFSPTTQEITYMSFG---QSE-PSVYLLNV------ 245
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ + EI + +T P SPDG+ ++ + + NLFV+D +
Sbjct: 246 --ETGQREIVGNFPGMTFS-------PRFSPDGQRVIMSLQQGANSNLFVMDLRSKATT- 295
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
+LTD P IDT P +SP G I F S+R V YV+ G RRI +
Sbjct: 296 ---RLTDTPAIDTAPCFSPDGSRICFESDRGGSQQV-----YVMGAGGGNARRISFG--Q 345
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR 594
GS + +S G+++ FT Q Q + ++K DGSG R
Sbjct: 346 GS-------YSTPVWSPRGDFIAFT--------------KQEQGKFGIGIIKPDGSGERL 384
Query: 595 LTWNGYENGTPAWHPGNQL 613
LT GY N P + P ++
Sbjct: 385 LT-EGYHNEGPTFAPNGRV 402
>gi|323138231|ref|ZP_08073303.1| Tol-Pal system beta propeller repeat protein TolB [Methylocystis
sp. ATCC 49242]
gi|322396483|gb|EFX99012.1| Tol-Pal system beta propeller repeat protein TolB [Methylocystis
sp. ATCC 49242]
Length = 435
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 72/169 (42%), Gaps = 33/169 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + NL+ +D + +LTD IDT PS+SP G IAF
Sbjct: 252 PRFSPDGQKIIMSLSQGSSTNLYTMDLRSRT----TTRLTDTSAIDTAPSFSPDGSRIAF 307
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ G +RI G R + +S G+++ FT
Sbjct: 308 ESDRGGSQQI-----YVMGAHGGEAKRISFGG---------GRYSTPVWSPKGDYIAFTK 353
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G + + V+K DGSG R LT G+ N P W P
Sbjct: 354 QNGGNFS--------------IGVMKTDGSGERILT-EGFHNEGPTWAP 387
>gi|260582354|ref|ZP_05850147.1| tol-Pal system beta propeller repeat protein TolB [Haemophilus
influenzae NT127]
gi|260094722|gb|EEW78617.1| tol-Pal system beta propeller repeat protein TolB [Haemophilus
influenzae NT127]
Length = 427
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 94/206 (45%), Gaps = 46/206 (22%)
Query: 356 IKIAKSDGSKRWTLIKDRTA---FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412
I++A DG ++ I +R+A +WSP + + Y S F+++++ + I
Sbjct: 184 IRVADYDGYNQF--IVNRSAQPIMSPAWSPDGQRLAYVS----FENKKSQLVI------- 230
Query: 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
+++ + + G+N P+ SPDG L F S R G N++V+ A NG
Sbjct: 231 --------QDLNSGTRKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGA-NG-- 279
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
G QLT G +T P+WSP G+ I F+S+R S V + D SG V G
Sbjct: 280 -GTPTQLTSGAGNNTEPAWSPDGNSILFTSDRSG-------SPQVYRMDASG-GSATVVG 330
Query: 533 PEGSGDVDRERINHVCFSADGEWLLF 558
GS + SADG+ L+
Sbjct: 331 GRGSAQI----------SADGKTLVM 346
>gi|113868785|ref|YP_727274.1| translocation protein TolB [Ralstonia eutropha H16]
gi|113527561|emb|CAJ93906.1| periplasmic component of the Tol biopolymer transport system
[Ralstonia eutropha H16]
Length = 457
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 35/207 (16%)
Query: 358 IAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD 416
I+ SDG + + L + SWSP V Y S F++++ V +
Sbjct: 208 ISDSDGQNAQVALTSNEPIISPSWSPDGARVAYVS----FEAKKPVVYV----------- 252
Query: 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI 476
++ + L + GNN+ PS SPDG+ L R G+ ++ VN + +G I
Sbjct: 253 ----HDLASGKRTLVSNQKGNNSAPSWSPDGRHLALALSRDGNTQVY---QVNADGSG-I 304
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS 536
R+L+ IDT P +SP G I F+S+R V + + +G G +R+ +GS
Sbjct: 305 RRLSRSSAIDTEPQYSPDGKSIYFTSDRGGAPQV--YRMPASGEEGGGAQRVTF---KGS 359
Query: 537 GDVDRERINHVCFSADGEWLLFTANLG 563
+V S DG++L + + G
Sbjct: 360 YNVSPR------VSPDGKYLAYISRAG 380
Score = 45.4 bits (106), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 29/169 (17%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG + + S + ++V D +G+ +++ ++ PSWSP G +A
Sbjct: 229 PSWSPDGARVAYVSFEAKKPVVYVHDLASGKRT----LVSNQKGNNSAPSWSPDGRHLAL 284
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ +R V Y + DGSG+RR+ S +D E +S DG+ + FT+
Sbjct: 285 ALSRDGNTQV-----YQVNADGSGIRRLSR-----SSAIDTE----PQYSPDGKSIYFTS 330
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ G P ++ + +G G +R+T+ G N +P P
Sbjct: 331 DRGGA-------PQVYR----MPASGEEGGGAQRVTFKGSYNVSPRVSP 368
>gi|378578942|ref|ZP_09827615.1| periplasmic protein [Pantoea stewartii subsp. stewartii DC283]
gi|377818455|gb|EHU01538.1| periplasmic protein [Pantoea stewartii subsp. stewartii DC283]
Length = 431
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 10/118 (8%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG + T P+W P
Sbjct: 246 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRYNSTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS-GDVDRERINHVCFSADG 553
+A++S D A +Y I +G +RI G + DV + + V S G
Sbjct: 302 TLAYTS-----DQAGAPQIYKISINGGASQRITWEGAQNQDADVASDGKSMVMISTSG 354
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 72/162 (44%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG K+ V+ ++ NG +RQ+ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKLAYVTFESG-KSALVIQTLS---NGSVRQVASFPRHNGAPAFSPDGTKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I +G R + D + L +T+
Sbjct: 262 ALSKTG-----SLNLYVMDLASGQIRQIT----DG-----RYNSTEPTWFPDSQTLAYTS 307
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +Y + ++G +R+TW G +N
Sbjct: 308 DQAGAP--------------QIYKISINGGASQRITWEGAQN 335
>gi|194337187|ref|YP_002018981.1| WD40 domain-containing protein beta Propeller [Pelodictyon
phaeoclathratiforme BU-1]
gi|194309664|gb|ACF44364.1| WD40 domain protein beta Propeller [Pelodictyon phaeoclathratiforme
BU-1]
Length = 440
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 45/226 (19%)
Query: 362 DGSKRWTLIKDRTAFYN-SWSPTEKHVIY---TSTGPIFQ----SERATVQIARVSFQLD 413
DG L R+ N S SP +H+ Y +S + + ER T + +D
Sbjct: 199 DGYGVEQLTNSRSITMNPSLSPDGRHLAYIDFSSGRSVLRIQNLGERKTASVGNSGVSID 258
Query: 414 PS-------------DDNNREEIPCDVKILTKEETGNNAF---PSCSPDGKFLVFRSGRS 457
P+ D N + + L++ T + + P+ SPDG + F S R+
Sbjct: 259 PAWRSGSEVAATLSFDGNQQIYLVKTDGTLSRRLTNSRSIDISPAFSPDGSKMAFVSSRN 318
Query: 458 GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYV 517
G +F+ D +G+ +++LT +T PSWSP GD IA+++ N + +++
Sbjct: 319 GLPQIFIQDIQSGQ----VKRLTFSGRYNTQPSWSPAGDKIAYTTWEKNGE----INIFT 370
Query: 518 IKPDGSGLRRIHVAGPEGSGDVDRERINHVC--FSADGEWLLFTAN 561
+ DGSGL ++ R ++C +S DG+ ++F++N
Sbjct: 371 VSADGSGLMQL-----------TRRCGENICPSWSPDGQMIVFSSN 405
Score = 46.6 bits (109), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 31/165 (18%)
Query: 335 PSFSPDGGLIVF--NHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN---SWSPTEKHVIY 389
P+FSPDG + F + + I+ +S KR T + YN SWSP + Y
Sbjct: 302 PAFSPDGSKMAFVSSRNGLPQIFIQDIQSGQVKRLTF----SGRYNTQPSWSPAGDKIAY 357
Query: 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF 449
T+ + + I VS +D + ++ G N PS SPDG+
Sbjct: 358 TT-----WEKNGEINIFTVS-----ADGSGLMQLT--------RRCGENICPSWSPDGQM 399
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
+VF S RSG + L+ +D+ G+ + Q+ DG T PSWS +
Sbjct: 400 IVFSSNRSGKQKLYTMDS-KGDKQRALLQV-DGQ--QTQPSWSLR 440
>gi|373459021|ref|ZP_09550788.1| surface antigen (D15) [Caldithrix abyssi DSM 13497]
gi|371720685|gb|EHO42456.1| surface antigen (D15) [Caldithrix abyssi DSM 13497]
Length = 941
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 85/202 (42%), Gaps = 37/202 (18%)
Query: 441 PSCSPDGKFLVFRS-GRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
P+ SPDGK +VF SG K+L++ + + + QLTD + D PSWSP G IA
Sbjct: 405 PTWSPDGKKIVFSGLSFSGQKDLYLFEPEGQK----LWQLTDDFYNDEDPSWSPDGRFIA 460
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559
FSS+R A +++++ + LR + E G FSADG +L FT
Sbjct: 461 FSSDRTPYGQQGAANIFLLNIENGELRYLTFGAQEDRGP---------AFSADGRFLAFT 511
Query: 560 ANLGA-----VMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLD 614
++ V+ P+ QP + G+ P W P N L
Sbjct: 512 SDRKGSYNIYVLKNPIESAFSNQPAQFFKMTSYLGATF-----------DPCWTPDNSLI 560
Query: 615 LG-------KLRLEDDIGDKLR 629
G ++R E D +L+
Sbjct: 561 YGAFEKGYFQIRFEPDFLKRLQ 582
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 14/88 (15%)
Query: 437 NNAFPSCSPDGKFLVFRS-----GRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491
N+ PS SPDG+F+ F S G+ G N+F+L+ NGE +R LT G D P++
Sbjct: 446 NDEDPSWSPDGRFIAFSSDRTPYGQQGAANIFLLNIENGE----LRYLTFGAQEDRGPAF 501
Query: 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIK 519
S G +AF+S+R N+ YV+K
Sbjct: 502 SADGRFLAFTSDRKGSYNI-----YVLK 524
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 99/230 (43%), Gaps = 35/230 (15%)
Query: 282 FHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS--PVKELRMLRLNGSF-PSFS 338
FH ++ +S N I S G++ + +L +A + +L G + P++S
Sbjct: 353 FHIFDSRISVNKNGI----LAFSSKSGENDVLYLYSIAQRKVISRHSFPKLVGIYSPTWS 408
Query: 339 PDGGLIVFN-HDFELNAGIKIAKSDGSKRWTLIKDRTAFYN----SWSPTEKHVIYTS-T 392
PDG IVF+ F + + + +G K W L D FYN SWSP + + ++S
Sbjct: 409 PDGKKIVFSGLSFSGQKDLYLFEPEGQKLWQLTDD---FYNDEDPSWSPDGRFIAFSSDR 465
Query: 393 GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452
P Q A + F L+ + R + +E+ G P+ S DG+FL F
Sbjct: 466 TPYGQQGAANI------FLLNIENGELRY-----LTFGAQEDRG----PAFSADGRFLAF 510
Query: 453 RSGRSGHKNLFVL-DAVNGEFNGDIRQ---LTDGPWIDTMPSWSPKGDLI 498
S R G N++VL + + F+ Q +T P W+P LI
Sbjct: 511 TSDRKGSYNIYVLKNPIESAFSNQPAQFFKMTSYLGATFDPCWTPDNSLI 560
>gi|384537324|ref|YP_005721409.1| translocation protein TolB [Sinorhizobium meliloti SM11]
gi|336034216|gb|AEH80148.1| translocation protein TolB [Sinorhizobium meliloti SM11]
Length = 455
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 54/98 (55%), Gaps = 15/98 (15%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR-QLTDGPWIDTMPSWSPKGDLIA 499
PS SPDG +VF S R G + L+V+ A + +G R DG + + P WSP+GDLIA
Sbjct: 316 PSYSPDGSRIVFESDRGGKQQLYVMGA---DGSGQTRISFGDGSY--STPVWSPRGDLIA 370
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGP 533
F+ FS+ V+KPDGSG R + H GP
Sbjct: 371 FTKQSGG-----KFSIGVMKPDGSGERILTTGFHNEGP 403
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 75/173 (43%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + +LT+ IDT PS+SP G I F
Sbjct: 272 PRFSPDGQRVIMSLQQEGNANIYTMDLRSRT----TTRLTNTAAIDTSPSYSPDGSRIVF 327
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LYV+ DGSG RI S V +S G+ + FT
Sbjct: 328 ESDRGGKQQ-----LYVMGADGSGQTRISFGDGSYSTPV---------WSPRGDLIAFTK 373
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT G+ N P W P ++
Sbjct: 374 QSGGKFS--------------IGVMKPDGSGERILT-TGFHNEGPTWAPNGRV 411
>gi|334317496|ref|YP_004550115.1| protein tolB [Sinorhizobium meliloti AK83]
gi|384530622|ref|YP_005714710.1| protein tolB [Sinorhizobium meliloti BL225C]
gi|407721805|ref|YP_006841467.1| protein TolB [Sinorhizobium meliloti Rm41]
gi|418400229|ref|ZP_12973772.1| translocation protein TolB [Sinorhizobium meliloti CCNWSX0020]
gi|333812798|gb|AEG05467.1| Protein tolB [Sinorhizobium meliloti BL225C]
gi|334096490|gb|AEG54501.1| Protein tolB [Sinorhizobium meliloti AK83]
gi|359505905|gb|EHK78424.1| translocation protein TolB [Sinorhizobium meliloti CCNWSX0020]
gi|407320037|emb|CCM68641.1| Protein TolB [Sinorhizobium meliloti Rm41]
Length = 434
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 54/98 (55%), Gaps = 15/98 (15%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR-QLTDGPWIDTMPSWSPKGDLIA 499
PS SPDG +VF S R G + L+V+ A + +G R DG + + P WSP+GDLIA
Sbjct: 295 PSYSPDGSRIVFESDRGGKQQLYVMGA---DGSGQTRISFGDGSY--STPVWSPRGDLIA 349
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGP 533
F+ FS+ V+KPDGSG R + H GP
Sbjct: 350 FTKQSGG-----KFSIGVMKPDGSGERILTTGFHNEGP 382
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 77/173 (44%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + +LT+ IDT PS+SP G I F
Sbjct: 251 PRFSPDGQRVIMSLQQEGNANIYTMDLRSRTTT----RLTNTAAIDTSPSYSPDGSRIVF 306
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LYV+ DGSG RI +GS + +S G+ + FT
Sbjct: 307 ESDRGGKQQ-----LYVMGADGSGQTRISFG--DGS-------YSTPVWSPRGDLIAFTK 352
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT G+ N P W P ++
Sbjct: 353 QSGGKFS--------------IGVMKPDGSGERILT-TGFHNEGPTWAPNGRV 390
>gi|268326068|emb|CBH39656.1| conserved hypothetical secreted protein, containing WD40-like beta
propeller repeats [uncultured archaeon]
gi|268326194|emb|CBH39782.1| conserved hypothetical secreted protein, containing WD40-like beta
propeller repeats [uncultured archaeon]
Length = 303
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/335 (22%), Positives = 132/335 (39%), Gaps = 63/335 (18%)
Query: 282 FHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDG 341
F P ++A+ G F + +G + I ++ + V L N P + P G
Sbjct: 19 FSILMPVMAADENVTGRIAFT-SNMDGNNEIYVMDADGTNVTRLTNDIANDINPEWHPKG 77
Query: 342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTA-FYNSWSPTEKHVIYTSTG----PIF 396
I F D + + I + DG+ L + A WSP + ++S I+
Sbjct: 78 CKIAFTSDRDGDLEIYLMDVDGTNITQLTNNTVADGCQCWSPNGSRIAFSSDRDGDPEIY 137
Query: 397 QSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR 456
+ + R++ DN +I P SPDG + F SGR
Sbjct: 138 VMDAEGTNVTRLT-------DNTCLDIN----------------PHWSPDGSKIAFSSGR 174
Query: 457 SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY 516
G ++V+D VNG + QLTD D+ W+ + + FSS+R F +Y
Sbjct: 175 VGDTEIYVMD-VNG---ANKEQLTDNNKWDSPGEWASDSNKLLFSSDRDGD-----FEVY 225
Query: 517 VIKPDGSGLRRI--HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPN 574
++ DG+ + ++ + EGS ++ GE ++F A
Sbjct: 226 LMDADGTKVTQLTNNAEYQEGS----------PAWALGGEKIVFVAG------------- 262
Query: 575 QFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+++ ++Y++ DG+ + ++T N + P W P
Sbjct: 263 RYKGDFEIYMMDSDGTNITQMTTNFADESDPVWAP 297
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 111/282 (39%), Gaps = 71/282 (25%)
Query: 342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSER 400
G I F + + N I + +DG+ L D N W P + +TS
Sbjct: 34 GRIAFTSNMDGNNEIYVMDADGTNVTRLTNDIANDINPEWHPKGCKIAFTSD-------- 85
Query: 401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSC---SPDGKFLVFRSGRS 457
+ + L D N ++ T N C SP+G + F S R
Sbjct: 86 ---RDGDLEIYLMDVDGTNITQL-----------TNNTVADGCQCWSPNGSRIAFSSDRD 131
Query: 458 GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYV 517
G ++V+DA ++ +LTD +D P WSP G IAFSS R V +YV
Sbjct: 132 GDPEIYVMDAEGT----NVTRLTDNTCLDINPHWSPDGSKIAFSSGR-----VGDTEIYV 182
Query: 518 IKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW------LLFTANLGAVMAEPVS 571
+ +G+ ++ D + + + GEW LLF+++
Sbjct: 183 MDVNGANKEQL----------TDNNK-----WDSPGEWASDSNKLLFSSDRDG------- 220
Query: 572 WPNQFQPYGDLYVVKLDGSGLRRLTWNG-YENGTPAWHPGNQ 612
F+ +Y++ DG+ + +LT N Y+ G+PAW G +
Sbjct: 221 ---DFE----VYLMDADGTKVTQLTNNAEYQEGSPAWALGGE 255
>gi|433614571|ref|YP_007191369.1| tol-pal system beta propeller repeat protein TolB [Sinorhizobium
meliloti GR4]
gi|429552761|gb|AGA07770.1| tol-pal system beta propeller repeat protein TolB [Sinorhizobium
meliloti GR4]
Length = 434
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 78/171 (45%), Gaps = 36/171 (21%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR-QLTDGPWIDTMPSWSPKGDLIA 499
PS SPDG +VF S R G + L+V+ A + +G R DG + + P WSP+GDLIA
Sbjct: 295 PSYSPDGSRIVFESDRGGKQQLYVMGA---DGSGQTRISFGDGSY--STPVWSPRGDLIA 349
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL-F 558
F+ FS+ V+KPDGSG RI G G ++ +G L+ F
Sbjct: 350 FTKQSGG-----KFSIGVMKPDGSG-ERILTTGFHNEGP---------TWAPNGRVLMFF 394
Query: 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
N GA + LY + L G + + G+ + PAW P
Sbjct: 395 RQNAGAGGPQ-------------LYSIDLTGYNEQLVQTQGFAS-DPAWSP 431
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 77/173 (44%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + +LT+ IDT PS+SP G I F
Sbjct: 251 PRFSPDGQRVIMSLQQEGNANIYTMDLRSRTTT----RLTNTAAIDTSPSYSPDGSRIVF 306
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LYV+ DGSG RI +GS + +S G+ + FT
Sbjct: 307 ESDRGGKQQ-----LYVMGADGSGQTRISFG--DGS-------YSTPVWSPRGDLIAFTK 352
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT G+ N P W P ++
Sbjct: 353 QSGGKFS--------------IGVMKPDGSGERILT-TGFHNEGPTWAPNGRV 390
>gi|15966492|ref|NP_386845.1| translocation protein TolB [Sinorhizobium meliloti 1021]
gi|32699712|sp|Q926C2.1|TOLB_RHIME RecName: Full=Protein TolB; Flags: Precursor
gi|15075763|emb|CAC47318.1| Probable TolB protein precursor [Sinorhizobium meliloti 1021]
Length = 436
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 54/98 (55%), Gaps = 15/98 (15%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR-QLTDGPWIDTMPSWSPKGDLIA 499
PS SPDG +VF S R G + L+V+ A + +G R DG + + P WSP+GDLIA
Sbjct: 297 PSYSPDGSRIVFESDRGGKQQLYVMGA---DGSGQTRISFGDGSY--STPVWSPRGDLIA 351
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGP 533
F+ FS+ V+KPDGSG R + H GP
Sbjct: 352 FTKQSGG-----KFSIGVMKPDGSGERILTTGFHNEGP 384
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 77/173 (44%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + +LT+ IDT PS+SP G I F
Sbjct: 253 PRFSPDGQRVIMSLQQEGNANIYTMDLRSRTTT----RLTNTAAIDTSPSYSPDGSRIVF 308
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LYV+ DGSG RI +GS + +S G+ + FT
Sbjct: 309 ESDRGGKQQ-----LYVMGADGSGQTRISFG--DGS-------YSTPVWSPRGDLIAFTK 354
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT G+ N P W P ++
Sbjct: 355 QSGGKFS--------------IGVMKPDGSGERILT-TGFHNEGPTWAPNGRV 392
>gi|114706798|ref|ZP_01439698.1| translocation protein TolB precursor [Fulvimarina pelagi HTCC2506]
gi|114537746|gb|EAU40870.1| translocation protein TolB precursor [Fulvimarina pelagi HTCC2506]
Length = 441
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ +V + G+ N++ +D + ++LT+ IDT PS+SP G I F
Sbjct: 258 PRFSPDGQKVVMSLQQDGNANIYAMDLRSRA----TQRLTNTAAIDTSPSYSPDGGRIVF 313
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LY + DGS +RI +GS + +S G+ + FT
Sbjct: 314 ESDRGGRQQ-----LYTMNADGSNQQRISFG--DGS-------YSTPVWSPRGDLIAFTK 359
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QFQ + V++ DGSG R LT GY N P W P ++
Sbjct: 360 QSGG----------QFQ----IGVMRPDGSGERILT-TGYHNEGPTWAPNGRV 397
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 87/198 (43%), Gaps = 38/198 (19%)
Query: 417 DNNREEIPCDVKILTKEETGNNAF----PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
D N D++ + N A PS SPDG +VF S R G + L+ ++A +G
Sbjct: 274 DGNANIYAMDLRSRATQRLTNTAAIDTSPSYSPDGGRIVFESDRGGRQQLYTMNA-DGSN 332
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
I DG + + P WSP+GDLIAF+ F + V++PDGSG RI G
Sbjct: 333 QQRI-SFGDGSY--STPVWSPRGDLIAFTKQSGG-----QFQIGVMRPDGSG-ERILTTG 383
Query: 533 PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG-DLYVVKLDGSG 591
G ++ +G L+F + +Q G +L+ + L G
Sbjct: 384 YHNEGP---------TWAPNGRVLMF-------------FRDQRGGGGPELWSIDLSGRN 421
Query: 592 LRRLTWNGYENGTPAWHP 609
+++ NG+ + PAW P
Sbjct: 422 EQKVPTNGFAS-DPAWSP 438
>gi|359784435|ref|ZP_09287607.1| translocation protein TolB [Halomonas sp. GFAJ-1]
gi|359298395|gb|EHK62611.1| translocation protein TolB [Halomonas sp. GFAJ-1]
Length = 428
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 24/154 (15%)
Query: 352 LNAGIKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410
+ G+ +A +DG + + L D+ SWSP + + Y S F++ER + I
Sbjct: 175 MQFGLYVADADGRNSKQVLTSDQPIMSPSWSPDGRKLAYVS----FETERPAIYI----- 225
Query: 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG 470
+++ ++ G N P+ SPDG+ + + G +++LD N
Sbjct: 226 ----------QDVATGQRVQATSFEGINGAPTWSPDGRRIAMSLSKDGQPEIYILDVANR 275
Query: 471 EFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
+ ++T IDT P+W+P G + F+S+R
Sbjct: 276 S----VERITQSSSIDTEPAWAPDGRSLIFTSDR 305
>gi|134074975|emb|CAK39055.1| unnamed protein product [Aspergillus niger]
Length = 649
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 26/197 (13%)
Query: 427 VKILTKEETGNNAFPSCSPDGKFLVFRS--------GRSGHKNLFVLDAVNGEFNGDIRQ 478
V +L N FPS + DG +VFR+ G L ++D + + + Q
Sbjct: 465 VTLLAGNNITNYGFPSYNYDGTQVVFRTWPGTASNGTTVGTTGLAIVDLPSRQ----VTQ 520
Query: 479 LTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV-EAFSLYVIKPDGSGLRRIHVAGPEGSG 537
LT W D +P++SP G I F + R N DN+ + + ++ + PDGS L ++ P +
Sbjct: 521 LTT-EW-DNLPAFSPDGKKILF-TRRTNLDNIGDNYDIFTMNPDGSELTKLT---PSIAS 574
Query: 538 DVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW 597
D H ++ DG L TA G P+ + + QPY + +++ DGS L+
Sbjct: 575 DA------HAVWTQDGRILYSTAMFGFQQEAPL-YDDSMQPYAIIMLMEADGSNKTALSN 627
Query: 598 NGYENGTPAWHPGNQLD 614
+ +E+ P + P + ++
Sbjct: 628 SLWEDAMPMFAPAHVME 644
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 83/196 (42%), Gaps = 38/196 (19%)
Query: 356 IKIAKSDGSKRWTLIKDRTA--FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD 413
+ IA+ DGS L+ + F SWSP KHV +TS + I RV+
Sbjct: 20 LYIAEPDGSNAKLLLGSNSVYDFRASWSPDAKHVYFTSE----RRGDGQADIYRVAI--- 72
Query: 414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
N + +V+ + G + S SPDGK L F + R + +L +
Sbjct: 73 ----NGTSTVGAEVEPVASSP-GVDDSASISPDGKMLAFATSRYNQTSQIMLMVLE---T 124
Query: 474 GDIRQLTDGPWIDTM-----------PSWSPKGDLIAFSSNRHNP----------DNVEA 512
G ++ LT P I P+WSP G+ I F+S+R+ P ++ +
Sbjct: 125 GSLKNLTLIPGISEAANSALPNGYFKPTWSPDGEWIVFTSDRNTPWRGHSDGSGWEHTQE 184
Query: 513 FSLYVIKPDGSGLRRI 528
S+Y +P+G+ R +
Sbjct: 185 LSIYAARPNGTDFRLV 200
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 14/218 (6%)
Query: 426 DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLD-AVNGE--FNGDIRQLTDG 482
+ K+L + + S SPD K + F S R G + A+NG ++ +
Sbjct: 29 NAKLLLGSNSVYDFRASWSPDAKHVYFTSERRGDGQADIYRVAINGTSTVGAEVEPVASS 88
Query: 483 PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEGSGDVDR 541
P +D S SP G ++AF+++R+N L V++ GS + G E +
Sbjct: 89 PGVDDSASISPDGKMLAFATSRYN--QTSQIMLMVLE-TGSLKNLTLIPGISEAANSALP 145
Query: 542 ERINHVCFSADGEWLLFTANLGA---VMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW- 597
+S DGEW++FT++ ++ W + + +Y + +G+ R ++
Sbjct: 146 NGYFKPTWSPDGEWIVFTSDRNTPWRGHSDGSGWEHTQEL--SIYAARPNGTDFRLVSSR 203
Query: 598 NGYENGTPAWHP-GNQLDLGKLRLEDDIGDKLRGQFDE 634
+ Y G+P + P G +L ++ ED +L+ + E
Sbjct: 204 SNYTQGSPRFSPNGKRLVFYEMLTEDTYNGRLQPELLE 241
>gi|400753444|ref|YP_006561812.1| protein TolB [Phaeobacter gallaeciensis 2.10]
gi|398652597|gb|AFO86567.1| putative protein TolB [Phaeobacter gallaeciensis 2.10]
Length = 446
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 101/246 (41%), Gaps = 34/246 (13%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDR--TAFYNSWSPTEKHVIYTST 392
P FSP G +++ I + +R L D +F ++P + V+Y+
Sbjct: 217 PRFSPTGDRVLYTSYESGFPQIHVLDVGSVQRRVLSADNGIMSFAPRFAPDGRTVVYS-- 274
Query: 393 GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452
QS+ I ++ D R + I T PS SPDG +VF
Sbjct: 275 ----QSQGGNTDIFTMNI-----DTGARTRLTSAPSIETA--------PSFSPDGSQIVF 317
Query: 453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA 512
S RSG L+V+ A GE R+++ G P WSP+GD++AF+ N
Sbjct: 318 ESDRSGAPQLYVMAATGGE----ARRISFGAGRYGTPVWSPRGDMVAFTKQ-----NKGR 368
Query: 513 FSLYVIKPDGSGLRRIHVA----GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAE 568
F + V++ DGS R + + GP S + A G LL++ ++ +
Sbjct: 369 FHIGVMRTDGSEERLLTASFLDEGPTWSPNGRVIMFTRETQGASGRALLYSVDVSGRNLK 428
Query: 569 PVSWPN 574
PV P+
Sbjct: 429 PVRTPD 434
>gi|433678728|ref|ZP_20510553.1| Protein tolB [Xanthomonas translucens pv. translucens DSM 18974]
gi|430816165|emb|CCP41064.1| Protein tolB [Xanthomonas translucens pv. translucens DSM 18974]
Length = 439
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 111/285 (38%), Gaps = 51/285 (17%)
Query: 348 HDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIA 406
D + + +A SDG T+++ + +WSP K + Y S F+ +++ +
Sbjct: 178 KDGAMRYALMVADSDGYNPQTIVRSAEPLLSPNWSPDGKKLAYVS----FERGNSSIYL- 232
Query: 407 RVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLD 466
++I + L G N PS SPDG+ L RSG+ ++V+D
Sbjct: 233 --------------QDIATGARQLVSSFRGINGAPSFSPDGRKLALALSRSGNPEIYVMD 278
Query: 467 AVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526
+ + QLT+ IDT P+W+P G+ I F+S+R + Y + G
Sbjct: 279 LGSKQLT----QLTNHFGIDTEPTWAPDGNSIYFTSDRGGRPQI-----YQVAATGGSAN 329
Query: 527 RI-----------------HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG-----A 564
R+ +A +GSG+ + + + L T +L A
Sbjct: 330 RVTFQGNYNATASVSFDGNKIAVAQGSGNTYKIAMMDRSLGSPRWSTLSTGSLDESPSFA 389
Query: 565 VMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
A V + + G LY V D +RL + P+W P
Sbjct: 390 PNASMVLYAAREGGRGVLYAVSADARVRQRLVLADGDVREPSWSP 434
>gi|406916525|gb|EKD55533.1| WD40-like protein Beta Propeller [uncultured bacterium]
Length = 1375
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 75/179 (41%), Gaps = 40/179 (22%)
Query: 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
FPS SPDG + F S R+G+ ++ +D+ NG + T T P WSP G I
Sbjct: 738 VFPSWSPDGSKIAFVSVRNGNPEIYTMDS-NGSNQKQLTFSTQSNCSSTYPKWSPDGSKI 796
Query: 499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV-----CFSADG 553
+ SN+ SG I VA G+ R N+ C+S DG
Sbjct: 797 VYESNK------------------SGNFEIWVANFTGTQ--SRLTFNNASSRTPCWSPDG 836
Query: 554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQ 612
+ FT+N+ Y +LY++ DG+ ++++T N P+W P Q
Sbjct: 837 LRIAFTSNING--------------YHELYIMNSDGTNMKQITNNKAGCLNPSWSPDGQ 881
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 113/269 (42%), Gaps = 48/269 (17%)
Query: 342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTA-FYNSWSPTEKHVIYTSTGPIFQSER 400
G+IVFN N I + DGS + + + T + SWSP + + S
Sbjct: 703 GMIVFNSFRGSNGEIYVMNPDGSNQTPITFNSTDDVFPSWSPDGSKIAFVSV------RN 756
Query: 401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHK 460
+I + +D + N ++ + + ++ +P SPDG +V+ S +SG+
Sbjct: 757 GNPEI----YTMDSNGSNQKQ------LTFSTQSNCSSTYPKWSPDGSKIVYESNKSGNF 806
Query: 461 NLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP 520
++V F G +LT P WSP G IAF+SN + LY++
Sbjct: 807 EIWV-----ANFTGTQSRLTFNNASSRTPCWSPDGLRIAFTSNING-----YHELYIMNS 856
Query: 521 DGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG 580
DG+ +++I ++ + +S DG+ +LF++N Y
Sbjct: 857 DGTNMKQITN---------NKAGCLNPSWSPDGQKILFSSN------------KDTYDYY 895
Query: 581 DLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
++YV+ L+ + +LT Y + P W P
Sbjct: 896 EIYVIDLNTNLQTKLTNLNYTSKFPEWSP 924
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 87/199 (43%), Gaps = 32/199 (16%)
Query: 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTST 392
++P +SPDG IV+ + N I +A G++ + ++ WSP + +TS
Sbjct: 785 TYPKWSPDGSKIVYESNKSGNFEIWVANFTGTQSRLTFNNASSRTPCWSPDGLRIAFTSN 844
Query: 393 GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452
+ + SD N ++I T + G PS SPDG+ ++F
Sbjct: 845 INGYH-----------ELYIMNSDGTNMKQI-------TNNKAG-CLNPSWSPDGQKILF 885
Query: 453 RSGRSGHK--NLFVLDAVNGEFNGDIR-QLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDN 509
S + + ++V+D N +++ +LT+ + P WSP G I FSS + N
Sbjct: 886 SSNKDTYDYYEIYVID-----LNTNLQTKLTNLNYTSKFPEWSPDGSKILFSSLAGSSQN 940
Query: 510 VEAFSLYVIKPDGSGLRRI 528
+ YV+ DG + ++
Sbjct: 941 I-----YVMDNDGKNINQL 954
>gi|398355018|ref|YP_006400482.1| protein TolB [Sinorhizobium fredii USDA 257]
gi|390130344|gb|AFL53725.1| protein TolB [Sinorhizobium fredii USDA 257]
Length = 456
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 78/171 (45%), Gaps = 36/171 (21%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR-QLTDGPWIDTMPSWSPKGDLIA 499
PS SPDG +VF S R G + L+V+ A + +G R DG + + P WSP+GDLIA
Sbjct: 317 PSYSPDGSRVVFESDRGGKQQLYVMGA---DGSGQTRISFGDGSY--STPVWSPRGDLIA 371
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL-F 558
F+ FS+ V+KPDGSG RI G G ++ +G L+ F
Sbjct: 372 FTKQSGG-----KFSIGVMKPDGSG-ERILTTGFHNEGP---------TWAPNGRVLMFF 416
Query: 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
N GA + LY + L G + + G+ + PAW P
Sbjct: 417 RQNAGAGGPQ-------------LYSIDLTGYNEQLVQTQGFAS-DPAWSP 453
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 73/173 (42%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + IDT PS+SP G + F
Sbjct: 273 PRFSPDGQRVIMSLQQEGNANIYTMDLRSRTTTRLTNTNA----IDTSPSYSPDGSRVVF 328
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LYV+ DGSG RI +GS + +S G+ + FT
Sbjct: 329 ESDRGGKQQ-----LYVMGADGSGQTRISFG--DGS-------YSTPVWSPRGDLIAFTK 374
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT G+ N P W P ++
Sbjct: 375 QSGGKFS--------------IGVMKPDGSGERILT-TGFHNEGPTWAPNGRV 412
>gi|407784260|ref|ZP_11131437.1| translocation protein TolB [Oceanibaculum indicum P24]
gi|407197447|gb|EKE67507.1| translocation protein TolB [Oceanibaculum indicum P24]
Length = 448
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG ++ R+G+ ++F +D + + +LT+ P IDT PS+SP G + F
Sbjct: 260 PRFSPDGNAVIMSMARNGNSDIFAMDLRTRK----VLRLTNDPAIDTSPSYSPDGRQVVF 315
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+S+R LYV++ DG +RRI EG R +S G+ + FT
Sbjct: 316 NSDRGGSQQ-----LYVMEGDGGNVRRISFG--EG-------RYATPVWSPRGDLIAFTK 361
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
N+ + Y + V++ DGSG R LT + + G P W P ++
Sbjct: 362 M------------NRGRFY--IGVMRPDGSGERLLTESFLDEG-PTWAPNGRV 399
>gi|254501514|ref|ZP_05113665.1| Tol-Pal system beta propeller repeat protein TolB [Labrenzia
alexandrii DFL-11]
gi|222437585|gb|EEE44264.1| Tol-Pal system beta propeller repeat protein TolB [Labrenzia
alexandrii DFL-11]
Length = 449
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 39/173 (22%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPD + +VF S R G + L+V+ A G+ ++++ GP + P WSP+GDLIAF
Sbjct: 309 PSFSPDSQRIVFESDRGGSQQLYVMSASGGQ----AQRISFGPGRYSTPVWSPRGDLIAF 364
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGPEGSGDVDRERINHVCFSADGEWL 556
+ F + V++PDG G R + H GP +S +G L
Sbjct: 365 TKQHQG-----RFMIGVMRPDGKGERVLTEGYHNEGP--------------AWSPNGRVL 405
Query: 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+F + P W V L G +RL + + P+W P
Sbjct: 406 VFFRDTPGANGGPQVW-----------TVDLTGYNEQRLETPAFAS-DPSWSP 446
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 74/173 (42%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ +V + + N+F +D + + +LT+ IDT PS+SP I F
Sbjct: 265 PRFSPDGQSVVMSLQQGSNANIFKMDLRSRQTT----RLTNSAAIDTSPSFSPDSQRIVF 320
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LYV+ G +RI GP R + +S G+ + FT
Sbjct: 321 ESDRGGSQQ-----LYVMSASGGQAQRISF-GP--------GRYSTPVWSPRGDLIAFT- 365
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
Q Q + V++ DG G R LT GY N PAW P ++
Sbjct: 366 -------------KQHQGRFMIGVMRPDGKGERVLT-EGYHNEGPAWSPNGRV 404
>gi|150397825|ref|YP_001328292.1| translocation protein TolB [Sinorhizobium medicae WSM419]
gi|166229991|sp|A6UCS7.1|TOLB_SINMW RecName: Full=Protein TolB; Flags: Precursor
gi|150029340|gb|ABR61457.1| Tol-Pal system beta propeller repeat TolB [Sinorhizobium medicae
WSM419]
Length = 436
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 54/98 (55%), Gaps = 15/98 (15%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR-QLTDGPWIDTMPSWSPKGDLIA 499
PS SPDG +VF S R G + L+V+ A + +G R DG + + P WSP+GDLIA
Sbjct: 297 PSYSPDGSRVVFESDRGGRQQLYVMGA---DGSGQTRISFGDGSY--STPVWSPRGDLIA 351
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGP 533
F+ FS+ V+KPDGSG R + H GP
Sbjct: 352 FTKQSGG-----KFSIGVMKPDGSGERILTTGFHNEGP 384
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + +LT+ IDT PS+SP G + F
Sbjct: 253 PRFSPDGQRVIMSLQQEGNANIYTMDLRSRTTT----RLTNTAAIDTSPSYSPDGSRVVF 308
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LYV+ DGSG RI +GS + +S G+ + FT
Sbjct: 309 ESDRGGRQQ-----LYVMGADGSGQTRISFG--DGS-------YSTPVWSPRGDLIAFTK 354
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT G+ N P W P ++
Sbjct: 355 QSGGKFS--------------IGVMKPDGSGERILT-TGFHNEGPTWAPNGRV 392
>gi|393773062|ref|ZP_10361461.1| translocation protein TolB [Novosphingobium sp. Rr 2-17]
gi|392721444|gb|EIZ78910.1| translocation protein TolB [Novosphingobium sp. Rr 2-17]
Length = 460
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 33/192 (17%)
Query: 422 EIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD 481
++ D + L P SPDGK++++ +SG +++ + + G G +QLT
Sbjct: 258 DLATDTQKLIARTGSPTLAPRWSPDGKWVLYSMAKSGTTDIYRISSAGG---GTPQQLTQ 314
Query: 482 GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDR 541
GP I+ S+SP G I F S+R + YV+ DGS RRI G
Sbjct: 315 GPGINIGGSYSPNGSQIVFESDRSGSQQI-----YVMNADGSNQRRISFFG--------- 360
Query: 542 ERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYE 601
R +S G+ + FT G + + V+ G G+R LT + ++
Sbjct: 361 GRAATPEWSPRGDQIAFTHIAGNLR---------------VAVMNPSGGGMRYLT-DSWQ 404
Query: 602 NGTPAWHPGNQL 613
+ P W P ++
Sbjct: 405 DEAPTWSPNGRI 416
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 105/250 (42%), Gaps = 49/250 (19%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGS-------------FPSFSPDG 341
Y R GES S I ++ P +K L ++ +G+ P +SPD
Sbjct: 180 YSRLSGESPFFDSKIAYIAETGPKDHRMKRLAIMDSDGANHRYLTSGQSMALTPRYSPDY 239
Query: 342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTA---FYNSWSPTEKHVIYTSTGPIFQS 398
I++ LN I D + + RT WSP K V+Y+ +
Sbjct: 240 SKILYLS--YLNGQPSIYVYDLATDTQKLIARTGSPTLAPRWSPDGKWVLYS------MA 291
Query: 399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG 458
+ T I R+S + +++ + G N S SP+G +VF S RSG
Sbjct: 292 KSGTTDIYRIS----SAGGGTPQQL--------TQGPGINIGGSYSPNGSQIVFESDRSG 339
Query: 459 HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVI 518
+ ++V++A +G + R+++ P WSP+GD IAF+ H N+ + V+
Sbjct: 340 SQQIYVMNA-DGS---NQRRISFFGGRAATPEWSPRGDQIAFT---HIAGNLR---VAVM 389
Query: 519 KPDGSGLRRI 528
P G G+R +
Sbjct: 390 NPSGGGMRYL 399
>gi|381203134|ref|ZP_09910242.1| translocation protein TolB [Sphingobium yanoikuyae XLDN2-5]
Length = 444
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 103/248 (41%), Gaps = 50/248 (20%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGS-------------FPSFSPDG 341
Y R GES S I ++ P + VK L ++ +G+ P FSPD
Sbjct: 164 YARLSGESPFFDSRIAYIAESGPKDNRVKRLAIMDSDGANHRFITNGQSIALTPRFSPDY 223
Query: 342 GLIVFNHDFELNAGIKIAKSD---GSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQS 398
IV+ L + ++I D G +R + T F WSP ++++++ +
Sbjct: 224 KSIVYVS--YLGSRVRIYVYDIGTGQQRLVTESNNTTFAPRWSPDGRNILFS------MA 275
Query: 399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG 458
I RVS Q + G + S SPDG+ +VF S RSG
Sbjct: 276 VSGNTDIYRVSAQ-------------GGAPVRLTNSPGIDVGGSYSPDGRQIVFESDRSG 322
Query: 459 HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVI 518
+ ++V++A + R+++ G P WSP+GDL+AF+ + F + V+
Sbjct: 323 GQQIYVMNA----DGSNQRRISHGGGRYATPEWSPRGDLVAFTKLSGD------FKIAVM 372
Query: 519 KPDGSGLR 526
P G R
Sbjct: 373 TPSGDNER 380
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 100/260 (38%), Gaps = 56/260 (21%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ I SDG+ R+ A +SP K ++Y S + R + +
Sbjct: 194 LAIMDSDGANHRFITNGQSIALTPRFSPDYKSIVYVS----YLGSRVRIYV--------- 240
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+I + L E P SPDG+ ++F SG+ +++ + A G
Sbjct: 241 ------YDIGTGQQRLVTESNNTTFAPRWSPDGRNILFSMAVSGNTDIYRVSAQGG---A 291
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
+R LT+ P ID S+SP G I F S+R + YV+ DGS RRI G
Sbjct: 292 PVR-LTNSPGIDVGGSYSPDGRQIVFESDRSGGQQI-----YVMNADGSNQRRISHGG-- 343
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LR 593
R +S G+ + FT + GD + + SG
Sbjct: 344 -------GRYATPEWSPRGDLVAFT-----------------KLSGDFKIAVMTPSGDNE 379
Query: 594 RLTWNGYENGTPAWHPGNQL 613
R+ NG+++ P W P ++
Sbjct: 380 RILTNGWQDEQPTWSPNGRV 399
>gi|339326835|ref|YP_004686528.1| protein TolB [Cupriavidus necator N-1]
gi|338166992|gb|AEI78047.1| protein TolB [Cupriavidus necator N-1]
Length = 457
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 94/207 (45%), Gaps = 35/207 (16%)
Query: 358 IAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD 416
I+ SDG + + L + SWSP V Y S F++++ V +
Sbjct: 208 ISDSDGQNAQVALTSNEPIISPSWSPDGARVAYVS----FEAKKPVVYV----------- 252
Query: 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI 476
++ + L + GNN+ PS SPDG+ L R G+ ++ VN + +G +
Sbjct: 253 ----HDLASGKRTLVSNQKGNNSAPSWSPDGQHLALALSRDGNTQVY---QVNADGSG-V 304
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS 536
R+L+ IDT P +SP G I F+S+R V + + +G G +R+ +GS
Sbjct: 305 RRLSRSSAIDTEPQYSPDGKSIYFTSDRGGAPQV--YRMPASGEEGGGAQRVTF---KGS 359
Query: 537 GDVDRERINHVCFSADGEWLLFTANLG 563
+V RI S DG++L + + G
Sbjct: 360 YNVS-PRI-----SPDGKYLAYISRTG 380
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 29/169 (17%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG + + S + ++V D +G+ +++ ++ PSWSP G +A
Sbjct: 229 PSWSPDGARVAYVSFEAKKPVVYVHDLASGKRT----LVSNQKGNNSAPSWSPDGQHLAL 284
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ +R V Y + DGSG+RR+ S +D E +S DG+ + FT+
Sbjct: 285 ALSRDGNTQV-----YQVNADGSGVRRLSR-----SSAIDTE----PQYSPDGKSIYFTS 330
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ G P ++ + +G G +R+T+ G N +P P
Sbjct: 331 DRGGA-------PQVYR----MPASGEEGGGAQRVTFKGSYNVSPRISP 368
>gi|349701037|ref|ZP_08902666.1| translocation protein TolB [Gluconacetobacter europaeus LMG 18494]
Length = 456
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 9/86 (10%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG +VF S R G L+++ A GD ++++ G P WSP+GDLIAF
Sbjct: 313 PSYSPDGSQIVFNSDRGGSPQLYIMSAA----GGDAKRISYGHGYYGSPVWSPRGDLIAF 368
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLR 526
S + +FSL V+ PDG+G R
Sbjct: 369 SRIANG-----SFSLGVMAPDGTGER 389
Score = 46.2 bits (108), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489
L + +G + P +PDG+ +V R G +++ +D RQ+T IDT P
Sbjct: 258 LLGDFSGISFAPRFAPDGRSVVLSVTRGGGSDIYTVDLTTMAR----RQITSSGAIDTSP 313
Query: 490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
S+SP G I F+S+R LY++ G +RI
Sbjct: 314 SYSPDGSQIVFNSDRGGSPQ-----LYIMSAAGGDAKRI 347
>gi|330828307|ref|YP_004391259.1| protein tolB [Aeromonas veronii B565]
gi|406678489|ref|ZP_11085664.1| protein tolB [Aeromonas veronii AMC35]
gi|423201158|ref|ZP_17187738.1| protein tolB [Aeromonas veronii AER39]
gi|423205289|ref|ZP_17191845.1| protein tolB [Aeromonas veronii AMC34]
gi|423211004|ref|ZP_17197557.1| protein tolB [Aeromonas veronii AER397]
gi|328803443|gb|AEB48642.1| Protein tolB [Aeromonas veronii B565]
gi|404614006|gb|EKB11010.1| protein tolB [Aeromonas veronii AER397]
gi|404617730|gb|EKB14664.1| protein tolB [Aeromonas veronii AER39]
gi|404621602|gb|EKB18468.1| protein tolB [Aeromonas veronii AMC35]
gi|404624372|gb|EKB21207.1| protein tolB [Aeromonas veronii AMC34]
Length = 441
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/320 (21%), Positives = 121/320 (37%), Gaps = 45/320 (14%)
Query: 310 STIP--HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW 367
+TIP + A + ++ RL G +F + + ++I+ DG
Sbjct: 144 ATIPGAQMRQFAHRISDIVYERLTGERGAFLTRLAYVSVQQGTQFPYQLRISDYDGYNEK 203
Query: 368 TLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD 426
TL++ R + +WSP + Y S F+++++ + + ++I
Sbjct: 204 TLLRSREPLMSPAWSPDGSKLAYVS----FENQKSEIYV---------------QDIYTQ 244
Query: 427 VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID 486
+ L G N P SPDG+ L + G NL+V+D + + ++T ID
Sbjct: 245 QRSLITSFRGINGAPEWSPDGRRLAIVLSKDGSPNLYVVDVASKQLT----RVTTSRVID 300
Query: 487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYV-----------------IKPDGSGLRRIH 529
T PSW P G + F+S R + + +L I PDG + +
Sbjct: 301 TEPSWMPDGQNLLFTSERGGKPQIYSVNLATGMTRRMTWEGESNQGASITPDGKIM--VM 358
Query: 530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589
V +G + R+ + + + L + A + + +Q L +V DG
Sbjct: 359 VTRVQGQYRIARQDMENNALLVLTQSALDESPSVAPNGSMIIYATIYQGRKSLALVSTDG 418
Query: 590 SGLRRLTWNGYENGTPAWHP 609
L + E PAW P
Sbjct: 419 RFKAVLPTSSGEIRAPAWSP 438
>gi|73540499|ref|YP_295019.1| translocation protein TolB [Ralstonia eutropha JMP134]
gi|119371052|sp|Q474K8.1|TOLB_CUPPJ RecName: Full=Protein TolB; Flags: Precursor
gi|72117912|gb|AAZ60175.1| TolB, N-terminal:WD40-like Beta Propeller [Ralstonia eutropha
JMP134]
Length = 450
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 111/284 (39%), Gaps = 69/284 (24%)
Query: 358 IAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD 416
I+ SDG + + L + SWSP + V Y S F++++ V +
Sbjct: 201 ISDSDGQNSQVALTSNEPIISPSWSPDGRRVAYVS----FEAKKPVVYV----------- 245
Query: 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI 476
++ + L + GNN+ PS SPDG+ L R G+ ++ VN + +G I
Sbjct: 246 ----HDLATGKRTLVSNQKGNNSAPSWSPDGQHLAVALSRDGNTQVY---QVNADGSG-I 297
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV--------EAFSLY------------ 516
R+LT IDT P +SP G I F+S+R V EA S
Sbjct: 298 RRLTRSSAIDTEPQYSPDGKSIYFTSDRGGAPQVYRMPAGGEEAGSAQRVTFKGSYNVSP 357
Query: 517 VIKPDGSGLRRIHVAG-------PEGSGDV----DRERINHVCFSADGEWLLFTANLGAV 565
I PDG L I +G +GDV D F+A+G+++L+ +G
Sbjct: 358 RISPDGKYLAYITRSGGFKLQLQDLTNGDVTSLTDTSNDEAPSFAANGKYILYATRVGGR 417
Query: 566 MAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
L V DG + L+ + P+W P
Sbjct: 418 SV--------------LAAVSTDGRTRQVLSLQSGDVREPSWGP 447
>gi|56476928|ref|YP_158517.1| translocation protein TolB [Aromatoleum aromaticum EbN1]
gi|67461905|sp|Q5P4Z6.1|TOLB_AROAE RecName: Full=Protein TolB; Flags: Precursor
gi|56312971|emb|CAI07616.1| tolB protein precursor, periplasmic component of the Tol biopolymer
transport system [Aromatoleum aromaticum EbN1]
Length = 426
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 29/178 (16%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++IA +DG T + R + +W+P + + Y S F++++ V + ++
Sbjct: 177 LQIADADGMNAQTALASREPIISPAWAPDGQRLAYVS----FEAKKPVVYVHTLA----- 227
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ + + K G+N+ P+ +PDG+ L + G L+VL N + +G
Sbjct: 228 ---TGQRHVVANFK-------GSNSAPTWAPDGQRLAVVLTKDGQSQLYVL---NADGSG 274
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
+R++ P IDT P+WSP G+ I FSS+R + +Y I G +R+ G
Sbjct: 275 -LRRMATSPGIDTEPAWSPDGEWIYFSSDRGG-----SAQIYRIPASGGSAQRVTFEG 326
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 44/175 (25%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE------FNGDIRQLTDGPWIDTMPSWSPK 494
P+ +PDG+ L + S + ++V G+ F G ++ P+W+P
Sbjct: 200 PAWAPDGQRLAYVSFEAKKPVVYVHTLATGQRHVVANFKGS----------NSAPTWAPD 249
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
G +A + LYV+ DGSGLRR+ S +D E +S DGE
Sbjct: 250 GQRLAVVLTKDGQSQ-----LYVLNADGSGLRRMAT-----SPGIDTE----PAWSPDGE 295
Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
W+ F+++ G +Y + G +R+T+ G N TP P
Sbjct: 296 WIYFSSDRGG--------------SAQIYRIPASGGSAQRVTFEGNYNVTPRLSP 336
>gi|411012196|ref|ZP_11388525.1| translocation protein TolB [Aeromonas aquariorum AAK1]
Length = 441
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/320 (21%), Positives = 121/320 (37%), Gaps = 45/320 (14%)
Query: 310 STIP--HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW 367
+TIP + A + ++ RL G +F + + ++I+ DG
Sbjct: 144 ATIPGAQMRQFAHRISDIVYERLTGERGAFLTRLAYVSVQQGTQFPYQLRISDYDGYNEK 203
Query: 368 TLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD 426
TL++ R + +WSP + Y S F+++++ + + ++I
Sbjct: 204 TLLRSREPLMSPAWSPDGSKLAYVS----FENQKSEIYV---------------QDIYTQ 244
Query: 427 VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID 486
+ L G N P SPDG+ L + G NL+V+D + + ++T ID
Sbjct: 245 QRSLITSFRGINGAPEWSPDGRRLAIVLSKDGSPNLYVVDVASKQLT----RVTTSRVID 300
Query: 487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYV-----------------IKPDGSGLRRIH 529
T PSW P G + F+S R + + +L I PDG + +
Sbjct: 301 TEPSWMPDGQNLLFTSERGGKPQIYSVNLATGMTRRMTWEGESNQGASITPDGKIM--VM 358
Query: 530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589
V +G + R+ + + + L + A + + +Q L +V DG
Sbjct: 359 VTRVQGQYRIARQDMENNALLVLTQSALDESPSVAPNGSMIIYATIYQGRKSLALVSTDG 418
Query: 590 SGLRRLTWNGYENGTPAWHP 609
L + E PAW P
Sbjct: 419 RFKAVLPTSSGEIRAPAWSP 438
>gi|71275796|ref|ZP_00652080.1| TolB, N-terminal [Xylella fastidiosa Dixon]
gi|71163374|gb|EAO13092.1| TolB, N-terminal [Xylella fastidiosa Dixon]
gi|71729827|gb|EAO31925.1| TolB, N-terminal [Xylella fastidiosa Ann-1]
Length = 474
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 109/284 (38%), Gaps = 57/284 (20%)
Query: 352 LNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410
+ + +A SDG T+++ + WSP K + Y S F+ +++ I
Sbjct: 217 MRYALMVADSDGYNPQTIVRSAEPLLSPDWSPDGKKLAYVS----FEKGGSSIYI----- 267
Query: 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG 470
++I + L G NA PS +PDG + RSG+ ++V+D V+
Sbjct: 268 ----------QDIATGSRELVSSFRGINAAPSFAPDGHRIALSLSRSGNPEIYVMDLVSK 317
Query: 471 EFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530
+ + QLT+ IDT P WS G I F+S+R + Y + G R+
Sbjct: 318 Q----LIQLTNSFGIDTEPVWSSDGKFIYFTSDRGGRPQI-----YKVASVGGTATRVTF 368
Query: 531 AG-----------------PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP 573
G +GSG+V R + + G + T + G++ P P
Sbjct: 369 QGNYNATASVSYDDKKIVVAQGSGNVYRIAMMD---QSSGSTVWNTLSTGSLDESPSFAP 425
Query: 574 NQFQPY--------GDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
N G LY V D +RL + PAW P
Sbjct: 426 NASMVLYAAREGGRGVLYAVSADARVRQRLVSVDSDVREPAWGP 469
>gi|52081717|ref|YP_080508.1| acylaminoacyl peptidase [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|404490600|ref|YP_006714706.1| acylaminoacyl-peptidase YuxL [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423683713|ref|ZP_17658552.1| acylaminoacyl peptidase [Bacillus licheniformis WX-02]
gi|52004928|gb|AAU24870.1| putative acylaminoacyl-peptidase YuxL [Bacillus licheniformis DSM
13 = ATCC 14580]
gi|52349605|gb|AAU42239.1| putative acylaminoacyl-peptidase YuxL [Bacillus licheniformis DSM
13 = ATCC 14580]
gi|383440487|gb|EID48262.1| acylaminoacyl peptidase [Bacillus licheniformis WX-02]
Length = 653
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 46/187 (24%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G N P SPDGK+L F S R ++V+ A GE R++TD P+ + P WSP G
Sbjct: 64 GRNQHPRWSPDGKYLAFTSNREETAQIYVISAAGGE----ARKVTDIPYDVSQPEWSPDG 119
Query: 496 DLIAFSSN----------------RHNPDNVEAFSLYVIKPDGSGLRR----------IH 529
+ S H P V++ S K DG G +R +
Sbjct: 120 KSLLCSVKLTKEESVDDEKKTEIEDHEPLEVDSLSY---KADGQGFKRGKYTQLVLVQVE 176
Query: 530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589
+ D++R+ +H FS G+ + F AN + D+Y++ L
Sbjct: 177 TGEMKQLTDLERDHFSH-AFSPCGDQIAFCANQTDMRV------------NDVYLMNLST 223
Query: 590 SGLRRLT 596
L+RLT
Sbjct: 224 GDLKRLT 230
>gi|317038876|ref|XP_001402352.2| hypothetical protein ANI_1_2284184 [Aspergillus niger CBS 513.88]
Length = 336
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 26/197 (13%)
Query: 427 VKILTKEETGNNAFPSCSPDGKFLVFRS--------GRSGHKNLFVLDAVNGEFNGDIRQ 478
V +L N FPS + DG +VFR+ G L ++D + + + Q
Sbjct: 152 VTLLAGNNITNYGFPSYNYDGTQVVFRTWPGTASNGTTVGTTGLAIVDLPSRQ----VTQ 207
Query: 479 LTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV-EAFSLYVIKPDGSGLRRIHVAGPEGSG 537
LT W D +P++SP G I F + R N DN+ + + ++ + PDGS L ++ P +
Sbjct: 208 LTT-EW-DNLPAFSPDGKKILF-TRRTNLDNIGDNYDIFTMNPDGSELTKLT---PSIAS 261
Query: 538 DVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW 597
D H ++ DG L TA G P+ + + QPY + +++ DGS L+
Sbjct: 262 DA------HAVWTQDGRILYSTAMFGFQQEAPL-YDDSMQPYAIIMLMEADGSNKTALSN 314
Query: 598 NGYENGTPAWHPGNQLD 614
+ +E+ P + P + ++
Sbjct: 315 SLWEDAMPMFAPAHVME 331
>gi|423198218|ref|ZP_17184801.1| protein tolB [Aeromonas hydrophila SSU]
gi|404630442|gb|EKB27119.1| protein tolB [Aeromonas hydrophila SSU]
Length = 441
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/320 (21%), Positives = 121/320 (37%), Gaps = 45/320 (14%)
Query: 310 STIP--HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW 367
+TIP + A + ++ RL G +F + + ++I+ DG
Sbjct: 144 ATIPGAQMRQFAHRISDIVYERLTGERGAFLTRLAYVSVQQGTQFPYQLRISDYDGYNEK 203
Query: 368 TLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD 426
TL++ R + +WSP + Y S F+++++ + + ++I
Sbjct: 204 TLLRSREPLMSPAWSPDGSKLAYVS----FENQKSEIYV---------------QDIYTQ 244
Query: 427 VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID 486
+ L G N P SPDG+ L + G NL+V+D + + ++T ID
Sbjct: 245 QRSLITSFRGINGAPEWSPDGRRLAIVLSKDGSPNLYVVDVASKQLT----RVTTSRVID 300
Query: 487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYV-----------------IKPDGSGLRRIH 529
T PSW P G + F+S R + + +L I PDG + +
Sbjct: 301 TEPSWMPDGQNLLFTSERGGKPQIYSVNLSTGMTRRMTWEGESNQGASITPDGKIM--VM 358
Query: 530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589
V +G + R+ + + + L + A + + +Q L +V DG
Sbjct: 359 VTRVQGQYRIARQDMENNALLVLTQSALDESPSVAPNGSMIIYATIYQGRKSLALVSTDG 418
Query: 590 SGLRRLTWNGYENGTPAWHP 609
L + E PAW P
Sbjct: 419 RFKAVLPTSSGEIRAPAWSP 438
>gi|145630447|ref|ZP_01786228.1| translocation protein TolB precursor [Haemophilus influenzae R3021]
gi|144984182|gb|EDJ91619.1| translocation protein TolB precursor [Haemophilus influenzae R3021]
Length = 427
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 46/206 (22%)
Query: 356 IKIAKSDGSKRWTLIKDRTA---FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412
I++A DG ++ I +R+A +WSP + + Y S F+++++ + +
Sbjct: 184 IRVADYDGYNQF--IVNRSAQPIMSPAWSPDGQRLAYVS----FENKKSQLVV------- 230
Query: 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
+++ + + G+N P+ SPDG L F S R G N++V+ A NG
Sbjct: 231 --------QDLNSGARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGA-NG-- 279
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
G QLT G +T P+WSP G+ I F+S+R S V + D SG V G
Sbjct: 280 -GTPTQLTSGAGNNTEPAWSPDGNSILFTSDRSG-------SPQVYRMDASG-GSATVVG 330
Query: 533 PEGSGDVDRERINHVCFSADGEWLLF 558
GS + SADG+ L+
Sbjct: 331 GRGSAQI----------SADGKTLVM 346
>gi|299134178|ref|ZP_07027371.1| Tol-Pal system beta propeller repeat protein TolB [Afipia sp.
1NLS2]
gi|298590925|gb|EFI51127.1| Tol-Pal system beta propeller repeat protein TolB [Afipia sp.
1NLS2]
Length = 447
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NL+V+D + +LTD P IDT PS++P G I F
Sbjct: 266 PRFSPDGQRIIMSLQQGGNSNLYVMDLRSKSTT----RLTDTPAIDTSPSYAPDGSRICF 321
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ G +RI +GS + +S G+++ FT
Sbjct: 322 ESDRGGKPQI-----YVMAAGGGAAQRISFG--DGS-------YSTPVWSPRGDYIAFTK 367
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G A + ++K DGSG R LT +G+ N P + P ++
Sbjct: 368 QGGGQFA--------------IGIMKPDGSGERILT-SGFHNEGPTFAPNGRV 405
>gi|347760559|ref|YP_004868120.1| secretion system type I outer membrane protein [Gluconacetobacter
xylinus NBRC 3288]
gi|347579529|dbj|BAK83750.1| secretion system type I outer membrane protein [Gluconacetobacter
xylinus NBRC 3288]
Length = 456
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 9/86 (10%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG +VF S R G L+V+ A GE ++++ G P WSP+GDLIAF
Sbjct: 313 PSFSPDGSQIVFNSDRGGSPQLYVMSAAGGE----AKRISYGHGQYGSPVWSPRGDLIAF 368
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLR 526
S + +FSL V+ PDG+G R
Sbjct: 369 SRIANG-----SFSLGVMAPDGTGER 389
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489
L + +G + P SPDG+ ++ R G +++++D + RQLT IDT P
Sbjct: 258 LLGDFSGISFAPRFSPDGRSVILSVTRGGGSDIYLVDLASMSR----RQLTASGAIDTSP 313
Query: 490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
S+SP G I F+S+R LYV+ G +RI
Sbjct: 314 SFSPDGSQIVFNSDRGGSPQ-----LYVMSAAGGEAKRI 347
>gi|378696565|ref|YP_005178523.1| hypothetical protein HIB_04930 [Haemophilus influenzae 10810]
gi|301169084|emb|CBW28681.1| periplasmic protein [Haemophilus influenzae 10810]
Length = 427
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 46/206 (22%)
Query: 356 IKIAKSDGSKRWTLIKDRTA---FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412
I++A DG ++ I +R+A +WSP + + Y S F+++++ + +
Sbjct: 184 IRVADYDGYNQF--IVNRSAQPIMSPAWSPDGQRLAYVS----FENKKSQLVV------- 230
Query: 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
+++ + + G+N P+ SPDG L F S R G N++V+ A NG
Sbjct: 231 --------QDLNSGARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGA-NG-- 279
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
G QLT G +T P+WSP G+ I F+S+R S V + D SG V G
Sbjct: 280 -GTPTQLTSGAGNNTEPAWSPDGNSILFTSDRSG-------SPQVYRMDASG-GSATVVG 330
Query: 533 PEGSGDVDRERINHVCFSADGEWLLF 558
GS + SADG+ L+
Sbjct: 331 GRGSAQI----------SADGKTLVM 346
>gi|119383438|ref|YP_914494.1| translocation protein TolB [Paracoccus denitrificans PD1222]
gi|119373205|gb|ABL68798.1| TolB, N-terminal domain protein [Paracoccus denitrificans PD1222]
Length = 461
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 34/188 (18%)
Query: 427 VKILTKEETGNNAF-PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWI 485
+ L + G +F P SPDG+++V+ ++G+ +++ +DA G R LT+ P I
Sbjct: 262 ARQLGAGQQGTMSFSPRFSPDGRWIVYSLEQNGNTDIYQMDAATGA----QRALTNAPSI 317
Query: 486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERIN 545
+T PS+SP G I F S+R LYV+ +G RRI EG R
Sbjct: 318 ETSPSYSPDGKQIVFESDRSGTPQ-----LYVMGANGGEPRRISFG--EG-------RYG 363
Query: 546 HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTP 605
+S G+ + FT +G +F + V++ DGS + LT + + G P
Sbjct: 364 TPVWSPRGDMIAFTRQVG----------GKFH----IGVMRTDGSEEKMLTESFLDEG-P 408
Query: 606 AWHPGNQL 613
W P ++
Sbjct: 409 TWAPNGRV 416
>gi|404494654|ref|YP_006718760.1| biopolymer transport TolB-like protein [Pelobacter carbinolicus DSM
2380]
gi|404398084|gb|ABA90210.2| biopolymer transport periplasmic beta-propeller repeat protein,
TolB-related protein [Pelobacter carbinolicus DSM 2380]
Length = 430
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 114/296 (38%), Gaps = 94/296 (31%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTS----TGPIFQSERATVQIARVSF 410
+ + +DG+ L R+ N +SP + VIYTS +++ + +T Q AR++F
Sbjct: 181 LYLMDTDGANALRLTDHRSIVLNPDFSPNGREVIYTSYRRGNPDLYRKQLSTGQEARLAF 240
Query: 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG 470
+ G N PDG+ + +G+ L +L G
Sbjct: 241 K-----------------------KGLNIAARFRPDGREIALTQSATGNPELMLL----G 273
Query: 471 EFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH------------------------- 505
R+LT ID PSWSP GD +AF S+R
Sbjct: 274 TDGSRRRRLTSHWGIDVDPSWSPAGDRLAFVSDRQGNPHIFVMDLLGGQTARLTANGKYN 333
Query: 506 -----NPDNVE---------AFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSA 551
+PD F +Y ++PDG+ RR+ G G+ + H +S
Sbjct: 334 ATPAWSPDGKRIAFTRLEKGVFDIYTVRPDGTDERRLTF----GPGNKE-----HPRWSP 384
Query: 552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
D +L+++++ +Y+++ DG+G+RR++ G + PAW
Sbjct: 385 DSRFLVYSSDQDGRKG--------------IYIMRADGTGIRRISAGGGQCQHPAW 426
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 79/204 (38%), Gaps = 39/204 (19%)
Query: 337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGP- 394
F PDG I N + + +DGS+R L + SWSP + + S
Sbjct: 250 FRPDGREIALTQSATGNPELMLLGTDGSRRRRLTSHWGIDVDPSWSPAGDRLAFVSDRQG 309
Query: 395 ---IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451
IF + Q AR++ NA P+ SPDGK +
Sbjct: 310 NPHIFVMDLLGGQTARLT-----------------------ANGKYNATPAWSPDGKRIA 346
Query: 452 FRSGRSGHKNLFVLDAVNGEFNG-DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV 510
F G V D +G D R+LT GP P WSP + +SS++ +
Sbjct: 347 FTRLEKG-----VFDIYTVRPDGTDERRLTFGPGNKEHPRWSPDSRFLVYSSDQDGRKGI 401
Query: 511 EAFSLYVIKPDGSGLRRIHVAGPE 534
Y+++ DG+G+RRI G +
Sbjct: 402 -----YIMRADGTGIRRISAGGGQ 420
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 36/184 (19%)
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS-NRHNPD 508
+ + R+GHK L+++D + +LTD I P +SP G + ++S R NPD
Sbjct: 169 IAYIDNRTGHKELYLMDTDGA----NALRLTDHRSIVLNPDFSPNGREVIYTSYRRGNPD 224
Query: 509 NVE-----------AFSLYV-----IKPDGS--GLRRIHVAGPE----GSGDVDRERI-N 545
AF + +PDG L + PE G+ R R+ +
Sbjct: 225 LYRKQLSTGQEARLAFKKGLNIAARFRPDGREIALTQSATGNPELMLLGTDGSRRRRLTS 284
Query: 546 HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTP 605
H D W + + +++ + Q ++V+ L G RLT NG N TP
Sbjct: 285 HWGIDVDPSW--------SPAGDRLAFVSDRQGNPHIFVMDLLGGQTARLTANGKYNATP 336
Query: 606 AWHP 609
AW P
Sbjct: 337 AWSP 340
>gi|222054198|ref|YP_002536560.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Geobacter daltonii FRC-32]
gi|221563487|gb|ACM19459.1| Tol-Pal system beta propeller repeat protein TolB [Geobacter
daltonii FRC-32]
Length = 425
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 135/348 (38%), Gaps = 73/348 (20%)
Query: 289 VSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH 348
VS E + RF G+ T+ Q I H+ E+ L+ + P G F
Sbjct: 122 VSRGKELV-VKRFTGKRTD-QRKIVHMFS-----NEI----LSATTGETGPFTGKTAFVS 170
Query: 349 DFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTS----TGPIFQSERATV 403
N I + DG L K+ + N +SP+ K +IYTS +++ E T
Sbjct: 171 TASGNKEIYLMDYDGYNVQRLTKNGSINLNPDFSPSGKELIYTSYKRRNPDLYRRELLTG 230
Query: 404 QIARVS-----------------FQLDPSDDNNRE--EIPCD---VKILTKEETGNNAFP 441
AR+S L S D N E I D V LTK E + P
Sbjct: 231 AEARISSHPGINVTGAWSPDGTRIALAMSKDGNSEIYTISKDGKQVVRLTKNE-AIDVSP 289
Query: 442 SCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFS 501
+ SPDG + F S R G +FV++A + +LT + P WSPKG+ IA+
Sbjct: 290 AWSPDGSRIAFVSDRLGKPQIFVMNADGSH----VTRLTTSGTYNVSPRWSPKGNTIAYC 345
Query: 502 SNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN 561
F ++VI DGS ++ G H +S DG +++F+++
Sbjct: 346 RQEG------GFQIHVINVDGSNDIKLTSDGSN----------EHPRWSPDGRFIVFSSS 389
Query: 562 LGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+YV++ DG+G R++ + P W P
Sbjct: 390 RAGKEG--------------IYVMRNDGTGQVRVSRGSSADSHPTWSP 423
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 30/163 (18%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN---SWSPTEKHVIYTS 391
P++SPDG I F D I + +DGS L T YN WSP + Y
Sbjct: 289 PAWSPDGSRIAFVSDRLGKPQIFVMNADGSHVTRLTTSGT--YNVSPRWSPKGNTIAYCR 346
Query: 392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451
FQ + + V D +N D+K+ + G+N P SPDG+F+V
Sbjct: 347 QEGGFQ-----IHVINV-------DGSN------DIKLTSD---GSNEHPRWSPDGRFIV 385
Query: 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
F S R+G + ++V+ + G +R ++ G D+ P+WSP+
Sbjct: 386 FSSSRAGKEGIYVM---RNDGTGQVR-VSRGSSADSHPTWSPR 424
Score = 45.8 bits (107), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 36/190 (18%)
Query: 426 DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWI 485
+V+ LTK + N P SP GK L++ S + + +L+ + + G +++ P I
Sbjct: 187 NVQRLTKNGS-INLNPDFSPSGKELIYTSYKRRNPDLYRRELLTGAE----ARISSHPGI 241
Query: 486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERIN 545
+ +WSP G IA + ++ N E +Y I DG + R+ E I+
Sbjct: 242 NVTGAWSPDGTRIALAMSKDG--NSE---IYTISKDGKQVVRL----------TKNEAID 286
Query: 546 -HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGT 604
+S DG + F ++ + +P ++V+ DGS + RLT +G N +
Sbjct: 287 VSPAWSPDGSRIAFVSDR---LGKP-----------QIFVMNADGSHVTRLTTSGTYNVS 332
Query: 605 PAWHP-GNQL 613
P W P GN +
Sbjct: 333 PRWSPKGNTI 342
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 103/268 (38%), Gaps = 29/268 (10%)
Query: 122 LYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQES 181
+Y D RLT G ++ +P S SGK + SY+ R EL T S
Sbjct: 178 IYLMDYDGYNVQRLTKNGSINLNPDFSPSGKELIYTSYKRRNPDLYRRELLTGAEARISS 237
Query: 182 DPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPP 241
P V WS D T + DG I+ +S + + + R+T
Sbjct: 238 HPGINVTGA-------WSPDGTRIALAMSKDGNSEIYTIS-KDGKQVV-------RLTKN 282
Query: 242 GVHCFTPAAFHDGKRLAVATRRKNR------NFRHIEIYDLTLNPNFHHYNPFVSANSEF 295
+PA DG R+A + R + N + LT + + + +P S
Sbjct: 283 EAIDVSPAWSPDGSRIAFVSDRLGKPQIFVMNADGSHVTRLTTSGTY-NVSPRWSPKGNT 341
Query: 296 IGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG 355
I Y R EG I + S +L N P +SPDG IVF+ G
Sbjct: 342 IAYCR-----QEGGFQIHVINVDGSNDIKLTSDGSN-EHPRWSPDGRFIVFSSSRAGKEG 395
Query: 356 IKIAKSDGSKRWTLIKDRTA-FYNSWSP 382
I + ++DG+ + + + +A + +WSP
Sbjct: 396 IYVMRNDGTGQVRVSRGSSADSHPTWSP 423
>gi|406979844|gb|EKE01550.1| hypothetical protein ACD_21C00106G0010 [uncultured bacterium]
Length = 426
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 91/208 (43%), Gaps = 38/208 (18%)
Query: 357 KIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS 415
++A SDG + R L+ +WSP K + Y S F+ RA + +
Sbjct: 178 QVADSDGYNPRTLLVTSFPLMSPAWSPDGKQIAYVS----FEGNRAAIYV---------- 223
Query: 416 DDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGD 475
+++ + + + G N P+ SPDG+ + ++G+ ++VLD +
Sbjct: 224 -----QDLATGKRRILSKAPGINGAPAWSPDGRKMALVLTQTGYPKIYVLDLATNQ---- 274
Query: 476 IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEG 535
+ +LTD +DT P+W+P G+ + F+SNR + Y + D + R+ GP
Sbjct: 275 LERLTDDWSLDTEPNWAPDGNSLIFTSNRGGGPQI-----YRVYLDNKKVERVTYNGPYN 329
Query: 536 SGDVDRERINHVCFSADGEWLLFTANLG 563
+ F+++G+ ++ +G
Sbjct: 330 A---------RASFTSNGKAIVMLHQVG 348
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 32/159 (20%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDGK + + S ++V D G+ R L+ P I+ P+WSP G +A
Sbjct: 200 PAWSPDGKQIAYVSFEGNRAAIYVQDLATGKR----RILSKAPGINGAPAWSPDGRKMAL 255
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ + YV+ + L R+ + S D + ++ DG L+FT+
Sbjct: 256 VLTQTGYPKI-----YVLDLATNQLERLT---DDWSLDTEPN------WAPDGNSLIFTS 301
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNG 599
N G P +Y V LD + R+T+NG
Sbjct: 302 NRGG-------GPQ-------IYRVYLDNKKVERVTYNG 326
>gi|77464240|ref|YP_353744.1| translocation protein TolB [Rhodobacter sphaeroides 2.4.1]
gi|126463082|ref|YP_001044196.1| translocation protein TolB [Rhodobacter sphaeroides ATCC 17029]
gi|332559129|ref|ZP_08413451.1| translocation protein TolB [Rhodobacter sphaeroides WS8N]
gi|429206213|ref|ZP_19197481.1| tolB protein precursor, periplasmic protein [Rhodobacter sp. AKP1]
gi|119371057|sp|Q3J041.1|TOLB_RHOS4 RecName: Full=Protein TolB; Flags: Precursor
gi|166229984|sp|A3PM58.1|TOLB_RHOS1 RecName: Full=Protein TolB; Flags: Precursor
gi|77388658|gb|ABA79843.1| Probable TolB protein precursor [Rhodobacter sphaeroides 2.4.1]
gi|126104746|gb|ABN77424.1| TolB, N-terminal domain protein [Rhodobacter sphaeroides ATCC
17029]
gi|332276841|gb|EGJ22156.1| translocation protein TolB [Rhodobacter sphaeroides WS8N]
gi|428190934|gb|EKX59478.1| tolB protein precursor, periplasmic protein [Rhodobacter sp. AKP1]
Length = 444
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 34/182 (18%)
Query: 433 EETGNNAF-PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491
E+ G F P +PDG+ + F + G+ +++ LD +G RQLT+ P I+T PS+
Sbjct: 251 EQPGTMTFAPRFAPDGRTVAFSLEQGGNTDIYTLDTGSGTR----RQLTNSPSIETAPSY 306
Query: 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSA 551
SP G I F S+R LY++ G RRI G+G R +S
Sbjct: 307 SPDGSQIVFESDRSGGQQ-----LYIMPAGGGEPRRIS----NGAG-----RYGTPVWSP 352
Query: 552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGN 611
G+ + FT Q Q + V++ DGS R LT + + G P W P
Sbjct: 353 RGDLIAFT--------------KQHQGRFHIGVMRTDGSEERLLTASFLDEG-PTWAPNG 397
Query: 612 QL 613
++
Sbjct: 398 RV 399
>gi|407787512|ref|ZP_11134653.1| translocation protein TolB [Celeribacter baekdonensis B30]
gi|407199790|gb|EKE69805.1| translocation protein TolB [Celeribacter baekdonensis B30]
Length = 452
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 80/174 (45%), Gaps = 41/174 (23%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG +VF S RSG + L+++ A GE R++++G P WSP+GDLIAF
Sbjct: 312 PSFSPDGSQIVFESDRSGTQQLYIMPAGGGE----ARRISNGKGRYGTPIWSPRGDLIAF 367
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA----GPEGSGDVDRERINHVCFSADGEWL 556
+ N F + V++ DGS R + + GP ++ +G +
Sbjct: 368 TKQ-----NEGRFHIGVMRTDGSEERLLTASFLDEGP--------------SWAPNGRVI 408
Query: 557 LFT-ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+FT + GA A LY V + G L+R+ N + PAW P
Sbjct: 409 MFTRESQGAGGASA------------LYSVDISGRNLKRVPTNAGAS-DPAWSP 449
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 106/259 (40%), Gaps = 52/259 (20%)
Query: 356 IKIAKSDGSKRWTLIKDR-TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ + DG+ L D F +SPT V+YTS +++ R + + V
Sbjct: 200 LAVMDYDGAGLQYLTDDSYIVFAPRFSPTGDRVLYTS----YETGRPQITMLDVG----- 250
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
R +P + +T P +PDG+ +V+ + +L+ +D +G+
Sbjct: 251 --TVTRTRLPVPAEAVTFA-------PRFAPDGRSIVYSMSTGTNTDLYRMDIASGQST- 300
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
+LT+ P I+T PS+SP G I F S+R LY++ G RRI
Sbjct: 301 ---RLTNTPAIETAPSFSPDGSQIVFESDRSGTQQ-----LYIMPAGGGEARRIS----N 348
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR 594
G G R +S G+ + FT Q + + V++ DGS R
Sbjct: 349 GKG-----RYGTPIWSPRGDLIAFT--------------KQNEGRFHIGVMRTDGSEERL 389
Query: 595 LTWNGYENGTPAWHPGNQL 613
LT + + G P+W P ++
Sbjct: 390 LTASFLDEG-PSWAPNGRV 407
>gi|358639281|dbj|BAL26578.1| translocation protein TolB [Azoarcus sp. KH32C]
Length = 429
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 115/284 (40%), Gaps = 67/284 (23%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++IA +DG T + R + +W+P + + Y S F+S++ + + ++
Sbjct: 180 LQIADADGQNSATALASREPIISPAWAPDGQRLAYVS----FESKKPVIYVHTLA----- 230
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ ++ + K G+N+ P+ SPDG+ L + G L+VL N + +G
Sbjct: 231 ---TGQRQVVANFK-------GSNSAPTWSPDGQRLAVVLTKDGQSQLYVL---NADGSG 277
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR-------HNPDN------VEAFSLYVIKP- 520
+R+L IDT P+WSP G+ I F+S+R +P N V Y + P
Sbjct: 278 -VRRLATSSGIDTEPAWSPDGEWIYFTSDRGGSPQIYRSPANGGSAQRVTFEGSYNVTPR 336
Query: 521 ---DGSGLRRI------------HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV 565
DGS L I +A + + D R F+ +G +L+ G
Sbjct: 337 PAADGSSLAFITRNNGRFQVAIMDLATRQTTILTDSTRDESPSFAPNGRMILYATESGG- 395
Query: 566 MAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G L V DG +RL+ + PAW P
Sbjct: 396 -------------RGVLAAVSSDGRVKQRLSVQAADVREPAWGP 426
>gi|339320036|ref|YP_004679731.1| translocation protein TolB [Candidatus Midichloria mitochondrii
IricVA]
gi|338226161|gb|AEI89045.1| translocation protein TolB [Candidatus Midichloria mitochondrii
IricVA]
Length = 433
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 13/101 (12%)
Query: 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489
LT++ N PS SPDG +VF S R+G +++++ NG DI +++ G P
Sbjct: 284 LTRDIGAINTSPSYSPDGSKIVFNSDRAGRGQIYIMNR-NGS---DITKISSGSGTYATP 339
Query: 490 SWSPKGDLIAFSSNRHNPDNVEAFSLY--VIKPDGSGLRRI 528
WSP+GD IAF+ +E + Y V++PDGSG R +
Sbjct: 340 VWSPRGDFIAFT-------KIEGGTFYIGVMRPDGSGERLL 373
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 81/215 (37%), Gaps = 46/215 (21%)
Query: 329 RLNGSF------PSFSPDGGLIVFN-HDFELNAGIKIAKSDGSKRWTLIKDRTAFYNS-- 379
RL G F P FSPDG + + ++ +I DG K L +D A S
Sbjct: 238 RLVGHFKGISFSPRFSPDGNYAIMSVANYGSTNIFEINLEDG-KTTKLTRDIGAINTSPS 296
Query: 380 WSPTEKHVIYTS----TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEET 435
+SP +++ S G I+ R I ++S +
Sbjct: 297 YSPDGSKIVFNSDRAGRGQIYIMNRNGSDITKIS-----------------------SGS 333
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G A P SP G F+ F G + V+ +G +L W+D P+WSP G
Sbjct: 334 GTYATPVWSPRGDFIAFTKIEGGTFYIGVMRP-----DGSGERLLTTSWLDEGPTWSPNG 388
Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530
+I F+ R PD ++Y I G R I V
Sbjct: 389 RVIMFT--RQKPDGTS--NIYSIDVTGYNERLISV 419
>gi|221640124|ref|YP_002526386.1| translocation protein TolB [Rhodobacter sphaeroides KD131]
gi|221160905|gb|ACM01885.1| Protein tolB precursor [Rhodobacter sphaeroides KD131]
Length = 435
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 34/182 (18%)
Query: 433 EETGNNAF-PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491
E+ G F P +PDG+ + F + G+ +++ LD +G RQLT+ P I+T PS+
Sbjct: 242 EQPGTMTFAPRFAPDGRTVAFSLEQGGNTDIYTLDTGSGTR----RQLTNSPSIETAPSY 297
Query: 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSA 551
SP G I F S+R LY++ G RRI G+G R +S
Sbjct: 298 SPDGSQIVFESDRSGGQQ-----LYIMPAGGGEPRRIS----NGAG-----RYGTPVWSP 343
Query: 552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGN 611
G+ + FT Q Q + V++ DGS R LT + + G P W P
Sbjct: 344 RGDLIAFT--------------KQHQGRFHIGVMRTDGSEERLLTASFLDEG-PTWAPNG 388
Query: 612 QL 613
++
Sbjct: 389 RV 390
>gi|193212307|ref|YP_001998260.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Chlorobaculum parvum NCIB 8327]
gi|193085784|gb|ACF11060.1| Tol-Pal system beta propeller repeat protein TolB [Chlorobaculum
parvum NCIB 8327]
Length = 434
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 31/171 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG + F S R G +F+ D +G +R+LT +T PSWSP GD I +
Sbjct: 295 PSFSPDGSKMAFVSTREGPPQIFIQDLSSGS----VRRLTYSGTYNTQPSWSPSGDKILY 350
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
SS + N + ++++I DGS L ++ SG + E + +S DG ++F++
Sbjct: 351 SSLQKNGE----INIFMINVDGSNLLQLT------SGARNNE---YPSWSPDGSMIVFSS 397
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGN 611
LYV+ +DG+ R L E P+W N
Sbjct: 398 TRAGSR--------------KLYVMNVDGTNQRPLLNMKGEQQQPSWSIRN 434
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 70/163 (42%), Gaps = 27/163 (16%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAK-SDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTG 393
PSFSPDG + F E I I S GS R SWSP+ ++Y+S
Sbjct: 295 PSFSPDGSKMAFVSTREGPPQIFIQDLSSGSVRRLTYSGTYNTQPSWSPSGDKILYSS-- 352
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETG--NNAFPSCSPDGKFLV 451
L + + N I D L + +G NN +PS SPDG +V
Sbjct: 353 ------------------LQKNGEINIFMINVDGSNLLQLTSGARNNEYPSWSPDGSMIV 394
Query: 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
F S R+G + L+V++ V+G + R L + PSWS +
Sbjct: 395 FSSTRAGSRKLYVMN-VDGT---NQRPLLNMKGEQQQPSWSIR 433
Score = 43.5 bits (101), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 80/210 (38%), Gaps = 70/210 (33%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNG-----------------------------E 471
PS SPDG+FL + SG +L++ + G E
Sbjct: 208 PSVSPDGRFLAWTDFSSGRPDLYIKNLSTGSTVSVKKQGVCISPAWRPGTNECATTLSYE 267
Query: 472 FNGDI----------RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD 521
+ D+ R+LT G I+ PS+SP G +AF S R P + ++
Sbjct: 268 GSQDLYLIRADGTVARRLTRGHSIEVSPSFSPDGSKMAFVSTREGPPQI-----FIQDLS 322
Query: 522 GSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGD 581
+RR+ +G + +S G+ +L+++ Q G+
Sbjct: 323 SGSVRRLTYSGTYNT---------QPSWSPSGDKILYSS---------------LQKNGE 358
Query: 582 --LYVVKLDGSGLRRLTWNGYENGTPAWHP 609
++++ +DGS L +LT N P+W P
Sbjct: 359 INIFMINVDGSNLLQLTSGARNNEYPSWSP 388
>gi|68248985|ref|YP_248097.1| translocation protein TolB [Haemophilus influenzae 86-028NP]
gi|81336603|sp|Q4QNG0.1|TOLB_HAEI8 RecName: Full=Protein TolB; Flags: Precursor
gi|68057184|gb|AAX87437.1| TolB [Haemophilus influenzae 86-028NP]
Length = 427
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 46/206 (22%)
Query: 356 IKIAKSDGSKRWTLIKDRTA---FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412
+++A DG ++ I +R+A +WSP + + Y S F+++++ + +
Sbjct: 184 VRVADYDGYNQF--IVNRSAQPIMSPAWSPDGQRLAYVS----FENKKSQLVV------- 230
Query: 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
+++ + + G+N P+ SPDG L F S R G N++V+ A NG
Sbjct: 231 --------QDLNSGARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGA-NG-- 279
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
G QLT G +T P+WSP G+ I F+S+R S V + D SG V G
Sbjct: 280 -GTPTQLTSGAGNNTEPAWSPDGNSILFTSDRSG-------SPQVYRMDASGGSATAVGG 331
Query: 533 PEGSGDVDRERINHVCFSADGEWLLF 558
GS + SADG+ L+
Sbjct: 332 -RGSAQI----------SADGKTLVM 346
>gi|229846469|ref|ZP_04466577.1| translocation protein TolB [Haemophilus influenzae 7P49H1]
gi|229810562|gb|EEP46280.1| translocation protein TolB [Haemophilus influenzae 7P49H1]
Length = 427
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 46/206 (22%)
Query: 356 IKIAKSDGSKRWTLIKDRTA---FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412
+++A DG ++ I +R+A +WSP + + Y S F+++++ + +
Sbjct: 184 VRVADYDGYNQF--IVNRSAQPIMSPAWSPDGQRLAYVS----FENKKSQLVV------- 230
Query: 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
+++ + + G+N P+ SPDG L F S R G N++V+ A NG
Sbjct: 231 --------QDLNSGARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGA-NG-- 279
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
G QLT G +T P+WSP G+ I F+S+R S V + D SG V G
Sbjct: 280 -GTPTQLTSGAGNNTEPAWSPDGNSILFTSDRSG-------SPQVYRMDASGGSATAVGG 331
Query: 533 PEGSGDVDRERINHVCFSADGEWLLF 558
GS + SADG+ L+
Sbjct: 332 -RGSAQI----------SADGKTLVM 346
>gi|145634622|ref|ZP_01790331.1| translocation protein TolB precursor [Haemophilus influenzae
PittAA]
gi|145268167|gb|EDK08162.1| translocation protein TolB precursor [Haemophilus influenzae
PittAA]
Length = 427
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 46/206 (22%)
Query: 356 IKIAKSDGSKRWTLIKDRTA---FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412
+++A DG ++ I +R+A +WSP + + Y S F+++++ + +
Sbjct: 184 VRVADYDGYNQF--IVNRSAQPIMSPAWSPDGQRLAYVS----FENKKSQLVV------- 230
Query: 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
+++ + + G+N P+ SPDG L F S R G N++V+ A NG
Sbjct: 231 --------QDLNSGARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGA-NG-- 279
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
G QLT G +T P+WSP G+ I F+S+R S V + D SG V G
Sbjct: 280 -GTPTQLTSGAGNNTEPAWSPDGNSILFTSDRSG-------SPQVYRMDASGGSATAVGG 331
Query: 533 PEGSGDVDRERINHVCFSADGEWLLF 558
GS + SADG+ L+
Sbjct: 332 -RGSAQI----------SADGKTLVM 346
>gi|91205083|ref|YP_537438.1| translocation protein TolB [Rickettsia bellii RML369-C]
gi|157827580|ref|YP_001496644.1| translocation protein TolB [Rickettsia bellii OSU 85-389]
gi|119371058|sp|Q1RJW5.1|TOLB_RICBR RecName: Full=Protein TolB; Flags: Precursor
gi|166229987|sp|A8GXK7.1|TOLB_RICB8 RecName: Full=Protein TolB; Flags: Precursor
gi|91068627|gb|ABE04349.1| TolB protein precursor [Rickettsia bellii RML369-C]
gi|157802884|gb|ABV79607.1| translocation protein TolB precursor [Rickettsia bellii OSU 85-389]
Length = 444
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 130/320 (40%), Gaps = 41/320 (12%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA 354
Y + G++ S I ++ P VK + ++ +G+ + DG +V F +A
Sbjct: 151 YEKITGDTGYFDSKIIYVAESGPDLKKVKRIALMDYDGANNRYITDGKSLVLTPRFSGSA 210
Query: 355 GIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
S +KR TL+ Y T K I I + R + +
Sbjct: 211 DKIFYVSYATKRRTLV------YEKDLKTGKESIVGDFAGISFAPRFAPDGRKAVMSIAK 264
Query: 415 SDDNNREEIPCDVKILTK--EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
+ + EI K L K + G N PS SPDG+ +VF S R+G L+++++
Sbjct: 265 NGSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGRRIVFNSDRNGVPQLYIMNSD---- 320
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP---DGSGLRRIH 529
++++++ G PSWSP+GD IAF+ + + F++ V+KP D R+
Sbjct: 321 GSNVQRISFGGGSYMAPSWSPRGDYIAFTKIIRGSEG-KTFNIGVMKPYPQDDENSERVI 379
Query: 530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGD--LYVVKL 587
+G + C+S +G ++F WP+ + G +Y + L
Sbjct: 380 ASG---------YLVESPCWSPNGRVIMFAK----------GWPSNGKSSGKNRIYAIDL 420
Query: 588 DGSGLRRLTWNGYENGTPAW 607
G R + G + P W
Sbjct: 421 TGHNEREIKTPG-DASDPEW 439
>gi|16272330|ref|NP_438543.1| translocation protein TolB [Haemophilus influenzae Rd KW20]
gi|260580555|ref|ZP_05848383.1| tol-Pal system beta propeller repeat protein TolB [Haemophilus
influenzae RdAW]
gi|1174729|sp|P44677.1|TOLB_HAEIN RecName: Full=Protein TolB; Flags: Precursor
gi|1573352|gb|AAC22040.1| colicin tolerance protein (tolB) [Haemophilus influenzae Rd KW20]
gi|260092897|gb|EEW76832.1| tol-Pal system beta propeller repeat protein TolB [Haemophilus
influenzae RdAW]
Length = 427
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 46/206 (22%)
Query: 356 IKIAKSDGSKRWTLIKDRTA---FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412
+++A DG ++ I +R+A +WSP + + Y S F+++++ + +
Sbjct: 184 VRVADYDGYNQF--IVNRSAQPIMSPAWSPDGQRLAYVS----FENKKSQLVV------- 230
Query: 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
+++ + + G+N P+ SPDG L F S R G N++V+ A NG
Sbjct: 231 --------QDLNSGARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGA-NG-- 279
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
G QLT G +T P+WSP G+ I F+S+R S V + D SG V G
Sbjct: 280 -GTPTQLTSGAGNNTEPAWSPDGNSILFTSDRSG-------SPQVYRMDASGGSATAVGG 331
Query: 533 PEGSGDVDRERINHVCFSADGEWLLF 558
GS + SADG+ L+
Sbjct: 332 -RGSAQI----------SADGKTLVM 346
>gi|170747178|ref|YP_001753438.1| beta-propeller repeat-containing to-pal system protein TolB
[Methylobacterium radiotolerans JCM 2831]
gi|170653700|gb|ACB22755.1| Tol-Pal system beta propeller repeat protein TolB [Methylobacterium
radiotolerans JCM 2831]
Length = 445
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 118/291 (40%), Gaps = 62/291 (21%)
Query: 360 KSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNN 419
K + KR ++ A + + E ++ P Q ++F +
Sbjct: 185 KENRRKRLMVMDQDGANVRAITTGEMSIVAPRYSPATQD---------IAFMAQATGHQP 235
Query: 420 REEIPCDVKILTKEETGN----NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGD 475
R ++ +++ +++ GN +A P SPDG+ +V + G+ ++ +D +
Sbjct: 236 RVQM-INLETGSRQALGNVDSMSASPRFSPDGRKIVMSVQQGGNADIVTMDLASKA---- 290
Query: 476 IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEG 535
R +T+G IDT P++SP G IAF S+R V YV+ DGS RI GP
Sbjct: 291 QRSITNGMAIDTSPTYSPDGSQIAFESDRGGSQQV-----YVMGADGSNPHRITF-GPGS 344
Query: 536 SGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL 595
+ + FS G+ + +T A VS P DGSG R L
Sbjct: 345 A--------SQPAFSPRGDLIAYTRQRNGGFAICVSKP--------------DGSGERVL 382
Query: 596 TWNGYENGTPAWHPGNQLDL----------GKLRLEDDIGDKLRGQFDEPL 636
T G+ N P + P Q L GKL + D + G+ ++P+
Sbjct: 383 T-EGFHNEGPTFAPNGQYVLFFRDPGGQGGGKLFMVD-----ITGKVEQPV 427
>gi|329122257|ref|ZP_08250845.1| translocation protein TolB [Haemophilus aegyptius ATCC 11116]
gi|327473818|gb|EGF19235.1| translocation protein TolB [Haemophilus aegyptius ATCC 11116]
Length = 427
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 46/206 (22%)
Query: 356 IKIAKSDGSKRWTLIKDRTA---FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412
+++A DG ++ I +R+A +WSP + + Y S F+++++ + +
Sbjct: 184 VRVADYDGYNQF--IVNRSAQPIMSPAWSPDGQRLAYVS----FENKKSQLVV------- 230
Query: 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
+++ + + G+N P+ SPDG L F S R G N++V+ A NG
Sbjct: 231 --------QDLNSGARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGA-NG-- 279
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
G QLT G +T P+WSP G+ I F+S+R S V + D SG V G
Sbjct: 280 -GTPTQLTSGAGNNTEPAWSPDGNSILFTSDRSG-------SPQVYRMDASGGSATAVGG 331
Query: 533 PEGSGDVDRERINHVCFSADGEWLLF 558
GS + SADG+ L+
Sbjct: 332 -RGSAQI----------SADGKTLVM 346
>gi|319775689|ref|YP_004138177.1| TolB protein [Haemophilus influenzae F3047]
gi|319898096|ref|YP_004136293.1| tolb protein [Haemophilus influenzae F3031]
gi|317433602|emb|CBY81986.1| TolB protein [Haemophilus influenzae F3031]
gi|317450280|emb|CBY86496.1| TolB protein [Haemophilus influenzae F3047]
Length = 427
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 46/206 (22%)
Query: 356 IKIAKSDGSKRWTLIKDRTA---FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412
+++A DG ++ I +R+A +WSP + + Y S F+++++ + +
Sbjct: 184 VRVADYDGYNQF--IVNRSAQPIMSPAWSPDGQRLAYVS----FENKKSQLVV------- 230
Query: 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
+++ + + G+N P+ SPDG L F S R G N++V+ A NG
Sbjct: 231 --------QDLNSGARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGA-NG-- 279
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
G QLT G +T P+WSP G+ I F+S+R S V + D SG V G
Sbjct: 280 -GTPTQLTSGAGNNTEPAWSPDGNSILFTSDRSG-------SPQVYRMDASGGSATAVGG 331
Query: 533 PEGSGDVDRERINHVCFSADGEWLLF 558
GS + SADG+ L+
Sbjct: 332 -RGSAQI----------SADGKTLVM 346
>gi|187927780|ref|YP_001898267.1| translocation protein TolB [Ralstonia pickettii 12J]
gi|187724670|gb|ACD25835.1| Tol-Pal system beta propeller repeat protein TolB [Ralstonia
pickettii 12J]
Length = 434
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 115/289 (39%), Gaps = 74/289 (25%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG+ + L + +WSP V Y S F+S++ V +
Sbjct: 182 LQISDSDGANPQIALTSNEPIISPAWSPDGTKVAYVS----FESKKPVVYV--------- 228
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++ + + + GNN+ P+ SPDG+ + R G+ +++ VN + +G
Sbjct: 229 ------HDLVAGRRTVISNQKGNNSAPAWSPDGRHVAVSLSRDGNTQVYL---VNADGSG 279
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-- 532
+R+L+ IDT PS+SP G I F+S+R + + + V + G +R+ G
Sbjct: 280 -LRRLSRSSAIDTEPSFSPDGRSIYFTSDRGGAPQI--YRMSVDGEEAGGAQRVTFKGNY 336
Query: 533 -------PEG---------------------SGDV----DRERINHVCFSADGEWLLFTA 560
P+G +GDV D F+A+G+++L+
Sbjct: 337 NTSPRVSPDGKLLAYISRVGGAFRLYTQDLSNGDVNALTDTSNDESPSFAANGKFILYAT 396
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+G L V DG + L+ E PAW P
Sbjct: 397 RVGGKSV--------------LAAVSTDGRTRQVLSLQAGEVREPAWGP 431
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 24/174 (13%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIY 389
N S P++SPDG + + + N + + +DGS L + S+SP + + +
Sbjct: 245 NNSAPAWSPDGRHVAVSLSRDGNTQVYLVNADGSGLRRLSRSSAIDTEPSFSPDGRSIYF 304
Query: 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGN-NAFPSCSPDGK 448
TS QI R+S + EE ++ K GN N P SPDGK
Sbjct: 305 TS------DRGGAPQIYRMSV--------DGEEAGGAQRVTFK---GNYNTSPRVSPDGK 347
Query: 449 FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
L + S G L+ D NGD+ LTD D PS++ G I +++
Sbjct: 348 LLAYISRVGGAFRLYTQDLS----NGDVNALTDTSN-DESPSFAANGKFILYAT 396
>gi|218516474|ref|ZP_03513314.1| translocation protein TolB [Rhizobium etli 8C-3]
Length = 229
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + + +LT IDT PS+SP G ++F
Sbjct: 46 PRFSPDGQKVIMSLQQEGNSNIYTMDLRSRK----TTRLTSTAAIDTSPSYSPDGARVSF 101
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGSG RI +GS + +S G+ + FT
Sbjct: 102 ESDRGGKPQI-----YVMNADGSGQTRISFG--DGS-------YSTPVWSPRGDLIAFTK 147
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT G+ N P W P ++
Sbjct: 148 QAGGKFS--------------IGVMKPDGSGERILT-TGFHNEGPTWAPNGRV 185
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 11/119 (9%)
Query: 57 QTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIF 116
Q + ++S + PR+Y + + + E++ + P F R K+ E
Sbjct: 9 QEVTYMSFANQQPRVYMLQLETGQREVVGNFPGMTFSPRFSPDGQKVIMSLQQE------ 62
Query: 117 KSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYES-RPWPGEFHELNTD 174
S +Y+ DL++ K TRLT +D SPS S G A S+ES R + + +N D
Sbjct: 63 -GNSNIYTMDLRSRKTTRLTSTAAIDTSPSYSPDG---ARVSFESDRGGKPQIYVMNAD 117
>gi|254483262|ref|ZP_05096494.1| hypothetical protein GPB2148_301 [marine gamma proteobacterium
HTCC2148]
gi|214036485|gb|EEB77160.1| hypothetical protein GPB2148_301 [marine gamma proteobacterium
HTCC2148]
Length = 342
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 123/289 (42%), Gaps = 39/289 (13%)
Query: 283 HHYN-PFVSANSEFIGYHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGSFPSFS 338
+ YN P +S N + + Y F G G+S+I P SP+ + L P+F+
Sbjct: 80 NQYNRPALSPNQDAMVYVEFAG----GKSSIYRQSLGSPAKSPISSDAGMNLT---PAFT 132
Query: 339 PDGGLIVFNHDFELNA-GIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQ 397
P+G ++F+ D + + +SDG+ T I +F W P + IFQ
Sbjct: 133 PNGRFLIFSSDRSGESQSLWRKRSDGAGGITQITSSNSF--DWQPA---IASDGETIIFQ 187
Query: 398 SERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF-RSGR 456
S R Q A + I + +LT+ G + PS SPDG+ +VF R
Sbjct: 188 SHRKNNQAASI------------WSINMNGGLLTQLTEGRS--PSISPDGRRIVFVRPDA 233
Query: 457 SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH--NPDNVEAFS 514
S K+ V+G + QL+ G D PSW P G I F+S+ D ++
Sbjct: 234 STGKDQVWSMQVDGS---GLTQLSSGNANDVDPSWHPNGRYIVFASDAMVVQGDVFADYN 290
Query: 515 LYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD--GEWLLFTAN 561
+++++ DG+ ++ V R + F ++ G W LF+ N
Sbjct: 291 IWIMRADGTQREQLTENFSHDDAPVFDRRGRTIVFRSNRGGHWNLFSFN 339
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 81/190 (42%), Gaps = 30/190 (15%)
Query: 420 REEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL 479
R+ + K + G N P+ +P+G+FL+F S RSG +G G I Q+
Sbjct: 108 RQSLGSPAKSPISSDAGMNLTPAFTPNGRFLIFSSDRSGESQSLWRKRSDGA--GGITQI 165
Query: 480 TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV 539
T D P+ + G+ I F S+R N +A S++ I +G L ++ EG
Sbjct: 166 TSSNSFDWQPAIASDGETIIFQSHRKNN---QAASIWSINMNGGLLTQL----TEG---- 214
Query: 540 DRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNG 599
S DG ++F P+ ++ +++DGSGL +L+
Sbjct: 215 -----RSPSISPDGRRIVFVR------------PDASTGKDQVWSMQVDGSGLTQLSSGN 257
Query: 600 YENGTPAWHP 609
+ P+WHP
Sbjct: 258 ANDVDPSWHP 267
>gi|170730224|ref|YP_001775657.1| translocation protein TolB [Xylella fastidiosa M12]
gi|226705900|sp|B0U2E8.1|TOLB_XYLFM RecName: Full=Protein TolB; Flags: Precursor
gi|167965017|gb|ACA12027.1| TolB protein precursor [Xylella fastidiosa M12]
Length = 439
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 109/284 (38%), Gaps = 57/284 (20%)
Query: 352 LNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410
+ + +A SDG T+++ + WSP K + Y S F+ +++ I
Sbjct: 182 MRYALMVADSDGYNPQTIVRSAEPLLSPDWSPDGKKLAYVS----FEKGGSSIYI----- 232
Query: 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG 470
++I + L G NA PS +PDG + RSG+ ++V+D V+
Sbjct: 233 ----------QDIATGSRELVSSFRGINAAPSFAPDGHRIALSLSRSGNPEIYVMDLVSK 282
Query: 471 EFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530
+ + QLT+ IDT P WS G I F+S+R + Y + G R+
Sbjct: 283 Q----LIQLTNSFGIDTEPVWSSDGKFIYFTSDRGGRPQI-----YKVASVGGTATRVTF 333
Query: 531 AG-----------------PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP 573
G +GSG+V R + + G + T + G++ P P
Sbjct: 334 QGNYNATASVSYDDKKIVVAQGSGNVYRIAMMD---QSSGSTVWNTLSTGSLDESPSFAP 390
Query: 574 NQFQPY--------GDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
N G LY V D +RL + PAW P
Sbjct: 391 NASMVLYAAREGGRGVLYAVSADARVRQRLVSVDSDVREPAWGP 434
>gi|393776227|ref|ZP_10364523.1| translocation protein tolb [Ralstonia sp. PBA]
gi|392716616|gb|EIZ04194.1| translocation protein tolb [Ralstonia sp. PBA]
Length = 429
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 105/264 (39%), Gaps = 72/264 (27%)
Query: 379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN 438
+WSP V Y S F+S++ V + ++ + L + GNN
Sbjct: 202 TWSPDGTKVAYVS----FESKKPVVYV---------------HDLASGKRTLVSNQKGNN 242
Query: 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
+ PS SPDG+ L R G+ +++++ ++G +R+LT G IDT P +SP G I
Sbjct: 243 SAPSWSPDGRKLAVSLSRDGNTQIYLIN-IDGT---GLRRLTQGSAIDTEPQFSPDGKTI 298
Query: 499 AFSSNRHNPDNV---------EAFSLYV-----------IKPDGSGLRRIHVAG------ 532
F+S+R + A + V I PDG L I G
Sbjct: 299 YFTSDRGGAPQIYRMPVEGEQAARAQRVTFKGNYNVSPRISPDGKLLAYISRGGGFKLHV 358
Query: 533 -PEGSGDV----DRERINHVCFSADGEWLLFTANLG--AVMAEPVSWPNQFQPYGDLYVV 585
+GDV D F+A+G+++L+ G AV+A V
Sbjct: 359 QDLTNGDVTALTDTSNDEAPSFAANGKYILYATRAGGRAVLA----------------AV 402
Query: 586 KLDGSGLRRLTWNGYENGTPAWHP 609
+DG + L+ + PAW P
Sbjct: 403 SVDGRNRQILSLQSGDVREPAWGP 426
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 29/173 (16%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG + + S S ++V D +G+ +++ ++ PSWSP G +A
Sbjct: 201 PTWSPDGTKVAYVSFESKKPVVYVHDLASGKRT----LVSNQKGNNSAPSWSPDGRKLAV 256
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S +R + Y+I DG+GLRR+ +GS +D E FS DG+ + FT+
Sbjct: 257 SLSRDGNTQI-----YLINIDGTGLRRL----TQGSA-IDTEP----QFSPDGKTIYFTS 302
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+ G P ++ + V + +R+T+ G N +P P +L
Sbjct: 303 DRGGA-------PQIYR----MPVEGEQAARAQRVTFKGNYNVSPRISPDGKL 344
Score = 39.7 bits (91), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 73/186 (39%), Gaps = 23/186 (12%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIY 389
N S PS+SPDG + + + N I + DG+ L + +SP K + +
Sbjct: 241 NNSAPSWSPDGRKLAVSLSRDGNTQIYLINIDGTGLRRLTQGSAIDTEPQFSPDGKTIYF 300
Query: 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF 449
TS QI R+ + + + R + N P SPDGK
Sbjct: 301 TS------DRGGAPQIYRMPVEGEQAARAQRVTFKGNY----------NVSPRISPDGKL 344
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDN 509
L + S R G L V D NGD+ LTD D PS++ G I +++
Sbjct: 345 LAYIS-RGGGFKLHVQDLT----NGDVTALTDTSN-DEAPSFAANGKYILYATRAGGRAV 398
Query: 510 VEAFSL 515
+ A S+
Sbjct: 399 LAAVSV 404
>gi|373457076|ref|ZP_09548843.1| WD-40-like beta propeller repeat-containing protein [Caldithrix
abyssi DSM 13497]
gi|371718740|gb|EHO40511.1| WD-40-like beta propeller repeat-containing protein [Caldithrix
abyssi DSM 13497]
Length = 354
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 76/167 (45%), Gaps = 34/167 (20%)
Query: 483 PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI-HVAGPEGSGDVDR 541
P D + SP+GD I F+S R+ +Y + DGSGL+++ H G +G
Sbjct: 158 PGYDAEATVSPRGDKIVFTSQRNGD-----LDIYTVNIDGSGLKQLTHEIGYDGGA---- 208
Query: 542 ERINHVCFSADGEWLLFTA----------NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG 591
FS DG +++ A ++AE + PN FQ L+V+ DGS
Sbjct: 209 ------FFSWDGSKIVYRAYHPRTEEELKRYRKLLAEELIEPNNFQ----LFVMDADGSN 258
Query: 592 LRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEPLWI 638
R++T N + N P +HP N+ ++ ++G Q D LW+
Sbjct: 259 KRQITHNDFANFAPFFHPDNK----RIIFCSNMGTTESTQRDFNLWM 301
Score = 40.0 bits (92), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 75/332 (22%), Positives = 139/332 (41%), Gaps = 53/332 (15%)
Query: 322 VKELRMLRLNGSFPS--FSPDGGLIVFN--HDFELNAGIKIAKSDGS-KRWTLIKDRTAF 376
+K +RML G FS D +++ HD I I DGS KR
Sbjct: 39 LKNIRMLTNGGENAEAYFSFDESQLIYQSKHDSIKCDQIFIMNLDGSDKRMVSTGKGRTT 98
Query: 377 YNSWSPTEKHVIYTSTGPIFQS-------ERATVQIARVSFQLDPSDDNNREEIPCDVKI 429
+ + P ++ +IY ST + ++ R V S+ L ++ + + P
Sbjct: 99 CSYFLPGDQQIIYASTHGVDENCPPPPDFSRGYVWKVYSSYDLYIANADGSDPQPF---- 154
Query: 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489
G +A + SP G +VF S R+G +++ VN + +G ++QLT D
Sbjct: 155 --LPSPGYDAEATVSPRGDKIVFTSQRNGDLDIYT---VNIDGSG-LKQLTHEIGYDGGA 208
Query: 490 SWSPKGDLIAFSSNRHNPDNVEAFSLY-------VIKPDGSGLRRIHVAGPEGSGDVDRE 542
+S G I + + ++P E Y +I+P+ ++ V +GS ++
Sbjct: 209 FFSWDGSKIVYRA--YHPRTEEELKRYRKLLAEELIEPNNF---QLFVMDADGS---NKR 260
Query: 543 RINHVCFSA-------DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL 595
+I H F+ D + ++F +N+G + + +L+++ DG+GL+++
Sbjct: 261 QITHNDFANFAPFFHPDNKRIIFCSNMGTTESTQRDF--------NLWMINEDGTGLKQI 312
Query: 596 TWNGYENGTPAW-HPGNQLDLGKLRLEDDIGD 626
T+ +G P + H G +L R G+
Sbjct: 313 TFFKGFDGFPMFTHDGKKLVFASNRFNKKKGE 344
>gi|145632629|ref|ZP_01788363.1| translocation protein TolB precursor [Haemophilus influenzae 3655]
gi|229844455|ref|ZP_04464595.1| translocation protein TolB [Haemophilus influenzae 6P18H1]
gi|144986824|gb|EDJ93376.1| translocation protein TolB precursor [Haemophilus influenzae 3655]
gi|229812704|gb|EEP48393.1| translocation protein TolB [Haemophilus influenzae 6P18H1]
Length = 427
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 46/206 (22%)
Query: 356 IKIAKSDGSKRWTLIKDRTA---FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412
+++A DG ++ I +R+A +WSP + + Y S F+++++ + +
Sbjct: 184 VRVADYDGYNQF--IVNRSAQPIMSPAWSPDGQRLAYVS----FENKKSQLVV------- 230
Query: 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
+++ + + G+N P+ SPDG L F S R G N++V+ A NG
Sbjct: 231 --------QDLNSGARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGA-NG-- 279
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
G QLT G +T P+WSP G+ I F+S+R S V + D SG V G
Sbjct: 280 -GTPTQLTSGAGNNTEPAWSPDGNSILFTSDRSG-------SPQVYRMDASG-GSATVVG 330
Query: 533 PEGSGDVDRERINHVCFSADGEWLLF 558
GS + SADG+ L+
Sbjct: 331 GRGSAQI----------SADGKTLVM 346
>gi|171463097|ref|YP_001797210.1| translocation protein TolB [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171192635|gb|ACB43596.1| Tol-Pal system beta propeller repeat protein TolB [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 403
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 83/191 (43%), Gaps = 42/191 (21%)
Query: 379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN 438
SWSP K V Y S F+ + + + E+ I + GNN
Sbjct: 175 SWSPDGKKVAYVS----FEDRKPVIYV---------------HELATGRSISLSNQKGNN 215
Query: 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
+ P+ SPDGK L + G+ ++ +N + G + +LT G IDT P +S G I
Sbjct: 216 SAPAWSPDGKKLAISLSKDGNTQIY---GINADGTG-LHRLTRGNTIDTEPQYSADGRYI 271
Query: 499 AFSSNR-HNPDNVEAFSLYVIKPDG---SGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
F+S+R NP +Y + DG G++R+ G V RI S DG+
Sbjct: 272 YFTSDRGGNP------QIYRMSADGEQAEGVKRVTFK----QGFVTSPRI-----SPDGK 316
Query: 555 WLLFTANLGAV 565
+L + AN+G
Sbjct: 317 YLAYIANIGGA 327
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 27/205 (13%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYT 390
N S P++SPDG + + + N I +DG+ L + T + IY
Sbjct: 214 NNSAPAWSPDGKKLAISLSKDGNTQIYGINADGTGLHRLTRGNTIDTEPQYSADGRYIY- 272
Query: 391 STGPIFQSERA-TVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF 449
F S+R QI R+S D + E VK +T ++ G P SPDGK+
Sbjct: 273 -----FTSDRGGNPQIYRMSA------DGEQAE---GVKRVTFKQ-GFVTSPRISPDGKY 317
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDN 509
L + + G L++L+ GD + LTDG D PS++ G + +S+
Sbjct: 318 LAYIANIGGAYRLYILNLA----TGDAQALTDGTS-DESPSFAANGRYVLYSTKVGGKRI 372
Query: 510 VEAFSLYVIKPDGSGLRRIHVAGPE 534
+ A S+ DG+ R + + G +
Sbjct: 373 LAAVSV-----DGNSKRVLSIPGSD 392
>gi|114319404|ref|YP_741087.1| translocation protein TolB [Alkalilimnicola ehrlichii MLHE-1]
gi|122941253|sp|Q0AC40.1|TOLB_ALHEH RecName: Full=Protein TolB; Flags: Precursor
gi|114225798|gb|ABI55597.1| TolB, N-terminal domain protein [Alkalilimnicola ehrlichii MLHE-1]
Length = 428
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 115/261 (44%), Gaps = 44/261 (16%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A +DG + +++ R + +WSP + Y S F+ R+ + + +
Sbjct: 183 LMVADADGQRPREILESRQPIMSPAWSPERDRLAYVS----FEGGRSEIYVQNLR----- 233
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
R+ I G N+ P+ SPDG+ L R G N+++L +G
Sbjct: 234 --SGQRDRIAS--------FRGINSAPAWSPDGRHLAVTLSRDGRANIYLLRLDDGH--- 280
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-- 532
+R+LTD IDT P++SP G+ IAF+S+R V ++L V P G+ R+ G
Sbjct: 281 -VRRLTDHWAIDTEPTFSPDGERIAFTSDRGGRPQV--YTLAVNGP--GGVERVTFDGDY 335
Query: 533 ---PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS---WPNQ--FQPYGDLYV 584
P S D R + H +G + + +L + ++ W F P GD+ +
Sbjct: 336 NARPNWSPDGRRIAMVH---RHNGSFRIAVHDLESDRTRVLTDGPWDESPVFAPNGDMIM 392
Query: 585 VKLDGSG---LRRLTWNGYEN 602
GSG LR ++ +G N
Sbjct: 393 YSAGGSGDSRLRTVSVHGRAN 413
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 37/172 (21%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SP+ L + S G ++V + +G+ + ++ I++ P+WSP G +A
Sbjct: 206 PAWSPERDRLAYVSFEGGRSEIYVQNLRSGQRD----RIASFRGINSAPAWSPDGRHLAV 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRI--HVAGPEGSGDVDRERINHVCFSADGEWLLF 558
+ +R N+ Y+++ D +RR+ H A +D E FS DGE + F
Sbjct: 262 TLSRDGRANI-----YLLRLDDGHVRRLTDHWA-------IDTE----PTFSPDGERIAF 305
Query: 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDG-SGLRRLTWNGYENGTPAWHP 609
T++ G +P +Y + ++G G+ R+T++G N P W P
Sbjct: 306 TSDRGG------------RP--QVYTLAVNGPGGVERVTFDGDYNARPNWSP 343
>gi|399064605|ref|ZP_10747502.1| tol-pal system beta propeller repeat protein TolB [Novosphingobium
sp. AP12]
gi|398030590|gb|EJL23999.1| tol-pal system beta propeller repeat protein TolB [Novosphingobium
sp. AP12]
Length = 461
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 81/197 (41%), Gaps = 43/197 (21%)
Query: 422 EIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD 481
++ D + L P SPDGK++++ +SG +++ + + G G ++LT+
Sbjct: 259 DLATDRQTLVARTGAPTLAPRWSPDGKWVLYSMAKSGTTDIYRISSAGG---GTPQKLTN 315
Query: 482 GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI-----HVAGPEGS 536
GP I+ S+SP G I F S+R + YV+ DGS RRI A PE S
Sbjct: 316 GPGINIGGSYSPDGSQIVFESDRSGSQQI-----YVMGADGSNQRRISFFGGRAATPEWS 370
Query: 537 GDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596
D+ H+ NL + P G G+R LT
Sbjct: 371 PRGDQIAFTHIA-----------GNLRVAVMSP------------------SGGGMRHLT 401
Query: 597 WNGYENGTPAWHPGNQL 613
N +++ P W P ++
Sbjct: 402 DN-WQDEAPTWSPNGRI 417
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 103/250 (41%), Gaps = 49/250 (19%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGS-------------FPSFSPDG 341
Y R GES S I ++ P +K L ++ +G+ P +SPD
Sbjct: 181 YSRLSGESPFFDSKIAYIAETGPKDHRMKRLAIMDSDGANHRYLTSGQAMALTPRYSPDY 240
Query: 342 GLIVFNHDFELNAGIKIAKSD-GSKRWTLIKDRTA--FYNSWSPTEKHVIYTSTGPIFQS 398
I++ LN I D + R TL+ A WSP K V+Y+ +
Sbjct: 241 SKILYLS--YLNGQPSIYSYDLATDRQTLVARTGAPTLAPRWSPDGKWVLYS------MA 292
Query: 399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG 458
+ T I R+S + +++ G N S SPDG +VF S RSG
Sbjct: 293 KSGTTDIYRIS----SAGGGTPQKL--------TNGPGINIGGSYSPDGSQIVFESDRSG 340
Query: 459 HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVI 518
+ ++V+ G + R+++ P WSP+GD IAF+ H N+ + V+
Sbjct: 341 SQQIYVM----GADGSNQRRISFFGGRAATPEWSPRGDQIAFT---HIAGNLR---VAVM 390
Query: 519 KPDGSGLRRI 528
P G G+R +
Sbjct: 391 SPSGGGMRHL 400
>gi|387125907|ref|YP_006294512.1| tolB protein precursor [Methylophaga sp. JAM1]
gi|386272969|gb|AFI82867.1| tolB protein precursor [Methylophaga sp. JAM1]
Length = 433
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 111/277 (40%), Gaps = 52/277 (18%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ +DG+ T+++ + SW P + Y S F++ + V + ++
Sbjct: 183 LQISDADGANPRTVLQSTQPIMSPSWGPDGDQLAYVS----FENGKTEVFVQQL------ 232
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
R+ + G N+ P+ SPDGK L R+G+ ++V++ NG+
Sbjct: 233 -QSGQRKSVAS--------FEGINSAPAWSPDGKKLALTLSRNGNPEIYVMELANGDL-- 281
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYV----------------- 517
IR + IDT WSP G I F+S+R + S
Sbjct: 282 -IRVTNNAQAIDTEAVWSPDGSDIYFTSDRGGRPQIYKVSASGGRAERISFEGNYNASPD 340
Query: 518 IKPDGSGLRRIHVAGPEGS-----GDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSW 572
+ PDGS L +H G G D+ I+ + S E F N + + +
Sbjct: 341 LSPDGSKLAMVH--GANGGFYIAVQDLKTGAIHVLTDSGKAESPSFAPN-----GQMILY 393
Query: 573 PNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ + G L V +DG +RL+ +G PAW P
Sbjct: 394 ATEQKGSGILAAVSVDGRIHQRLSESGTVVREPAWSP 430
>gi|209543380|ref|YP_002275609.1| translocation protein TolB [Gluconacetobacter diazotrophicus PAl 5]
gi|209531057|gb|ACI50994.1| Tol-Pal system beta propeller repeat protein TolB
[Gluconacetobacter diazotrophicus PAl 5]
Length = 462
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 9/86 (10%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG +VF S R G L+++ A GD R+++ G + P WSP+GDLIAF
Sbjct: 319 PCYSPDGSQIVFNSDRGGSPQLYIMSA----GGGDARRISYGNGVYGSPVWSPRGDLIAF 374
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLR 526
+ + +FSL V+ PDG+G R
Sbjct: 375 TRIANG-----SFSLGVMAPDGTGER 395
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P +PDG+ ++ + R +++ +D V RQ+T IDT P +SP G I F
Sbjct: 275 PRFAPDGRAVILSATRGAGSDIYSVDLVTRAK----RQITSSGAIDTSPCYSPDGSQIVF 330
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
+S+R LY++ G RRI
Sbjct: 331 NSDRGGSPQ-----LYIMSAGGGDARRI 353
>gi|162146628|ref|YP_001601087.1| translocation protein TolB [Gluconacetobacter diazotrophicus PAl 5]
gi|161785203|emb|CAP54749.1| protein tolB precursor [Gluconacetobacter diazotrophicus PAl 5]
Length = 462
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 9/86 (10%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG +VF S R G L+++ A GD R+++ G + P WSP+GDLIAF
Sbjct: 319 PCYSPDGSQIVFNSDRGGSPQLYIMSA----GGGDARRISYGNGVYGSPVWSPRGDLIAF 374
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLR 526
+ + +FSL V+ PDG+G R
Sbjct: 375 TRIANG-----SFSLGVMAPDGTGER 395
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P +PDG+ ++ + R +++ +D V RQ+T IDT P +SP G I F
Sbjct: 275 PRFAPDGRAVILSATRGAGSDIYSVDLVTRAK----RQITSSGAIDTSPCYSPDGSQIVF 330
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
+S+R LY++ G RRI
Sbjct: 331 NSDRGGSPQ-----LYIMSAGGGDARRI 353
>gi|384428960|ref|YP_005638320.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Xanthomonas campestris pv. raphani 756C]
gi|341938063|gb|AEL08202.1| Tol-Pal system beta propeller repeat protein TolB [Xanthomonas
campestris pv. raphani 756C]
Length = 439
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 107/277 (38%), Gaps = 51/277 (18%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A SDG T+++ + +WSP K + Y S F+ +++ +
Sbjct: 186 LMVADSDGYNPQTIVRSAEPLLSPNWSPDGKKLAYVS----FERGNSSIYL--------- 232
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++I + L G N PS SPDG+ L RSG+ ++V+D + +
Sbjct: 233 ------QDIASGARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLT- 285
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI------ 528
QLT+ IDT P+W+P G I F+S+R + Y + G R+
Sbjct: 286 ---QLTNHFGIDTEPTWAPDGGSIYFTSDRGGRPQI-----YQVAASGGSANRVTFQGNY 337
Query: 529 -----------HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG-----AVMAEPVSW 572
VA +GSG+ R + + L +L A A V +
Sbjct: 338 NATASVSFDGKKVAVAQGSGNTYRIAMMDRSLGSPSWSTLSPGSLDESPSFAPNASMVLY 397
Query: 573 PNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ G LY V D +RL + PAW P
Sbjct: 398 AAREGGRGVLYAVSADARVRQRLVLADGDVREPAWGP 434
>gi|392408490|ref|YP_006445097.1| tol-pal system beta propeller repeat protein TolB [Desulfomonile
tiedjei DSM 6799]
gi|390621626|gb|AFM22833.1| tol-pal system beta propeller repeat protein TolB [Desulfomonile
tiedjei DSM 6799]
Length = 427
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 22/136 (16%)
Query: 427 VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID 486
+K+LT GN+ P+ SPDG + + S ++G ++V+ + G+ ++LT +
Sbjct: 278 LKVLTNGR-GNDISPAWSPDGAAMAYVSDQAGTPQIYVMSSQGGQ----PKRLTFNSNYN 332
Query: 487 TMPSWSPKGDLIAFSSNRHNPDNVEA-FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERIN 545
T P WSP+GDLIAF++ VE F + +KPDG+ LR + AG
Sbjct: 333 TDPDWSPRGDLIAFTA------RVEGRFQICTMKPDGTDLRVLTSAGSN----------Q 376
Query: 546 HVCFSADGEWLLFTAN 561
+S DG ++ F +N
Sbjct: 377 DPAWSPDGRFIAFVSN 392
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 39/178 (21%)
Query: 322 VKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGS--KRWTLIKDRTAFYNS 379
+K L R N P++SPDG + + D I + S G KR T + YN+
Sbjct: 278 LKVLTNGRGNDISPAWSPDGAAMAYVSDQAGTPQIYVMSSQGGQPKRLTF----NSNYNT 333
Query: 380 ---WSPTEKHVIYTSTGPIFQSERATVQIARVS--FQLDPSDDNNREEIPCDVKILTKEE 434
WSP + +T ARV FQ+ + D+++LT
Sbjct: 334 DPDWSPRGDLIAFT---------------ARVEGRFQICTMKPDG-----TDLRVLT--S 371
Query: 435 TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
G+N P+ SPDG+F+ F S R G + ++++D+ G + +T P+WS
Sbjct: 372 AGSNQDPAWSPDGRFIAFVSNRDGRRLIYIMDS-RGRIQAPVSPIT-----GKSPAWS 423
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 43/199 (21%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG-DIRQLTDGPWIDTMPSWSPKGD 496
N P SPDG+ ++F S G+ +++ +D F G +R L+ P ++ P SP G+
Sbjct: 200 NLSPDWSPDGRSIIFTSYIRGNPDVWAVD-----FPGLGLRPLSSRPGLNASPRHSPDGN 254
Query: 497 LIAFSSNRHNPD-----NVEAFSLYVI------------KPDG---------SGLRRIHV 530
+A S+N +N N + L V+ PDG +G +I+V
Sbjct: 255 YVALSANVNNLPKIIVINAQGNMLKVLTNGRGNDISPAWSPDGAAMAYVSDQAGTPQIYV 314
Query: 531 AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590
+G G R N ++ D +W + G ++A +FQ + +K DG+
Sbjct: 315 MSSQG-GQPKRLTFNS-NYNTDPDW----SPRGDLIAFTARVEGRFQ----ICTMKPDGT 364
Query: 591 GLRRLTWNGYENGTPAWHP 609
LR LT G N PAW P
Sbjct: 365 DLRVLTSAG-SNQDPAWSP 382
>gi|21232448|ref|NP_638365.1| translocation protein TolB [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66767469|ref|YP_242231.1| translocation protein TolB [Xanthomonas campestris pv. campestris
str. 8004]
gi|188990575|ref|YP_001902585.1| translocation protein TolB [Xanthomonas campestris pv. campestris
str. B100]
gi|32699705|sp|Q8P6F2.1|TOLB_XANCP RecName: Full=Protein TolB; Flags: Precursor
gi|81306551|sp|Q4UXL2.1|TOLB_XANC8 RecName: Full=Protein TolB; Flags: Precursor
gi|226705898|sp|B0RPZ2.1|TOLB_XANCB RecName: Full=Protein TolB; Flags: Precursor
gi|21114229|gb|AAM42289.1| TolB protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66572801|gb|AAY48211.1| TolB protein [Xanthomonas campestris pv. campestris str. 8004]
gi|167732335|emb|CAP50527.1| TolB protein [Xanthomonas campestris pv. campestris]
Length = 439
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 107/277 (38%), Gaps = 51/277 (18%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A SDG T+++ + +WSP K + Y S F+ +++ +
Sbjct: 186 LMVADSDGYNPQTIVRSAEPLLSPNWSPDGKKLAYVS----FERGNSSIYL--------- 232
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++I + L G N PS SPDG+ L RSG+ ++V+D + +
Sbjct: 233 ------QDIASGARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLT- 285
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI------ 528
QLT+ IDT P+W+P G I F+S+R + Y + G R+
Sbjct: 286 ---QLTNHFGIDTEPTWAPDGGSIYFTSDRGGRPQI-----YQVAASGGSANRVTFQGNY 337
Query: 529 -----------HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG-----AVMAEPVSW 572
VA +GSG+ R + + L +L A A V +
Sbjct: 338 NATASVSFDGKKVAVAQGSGNTYRIAMMDRSLGSPSWSTLSPGSLDESPSFAPNASMVLY 397
Query: 573 PNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ G LY V D +RL + PAW P
Sbjct: 398 AAREGGRGVLYAVSADARVRQRLVLADGDVREPAWGP 434
>gi|148825336|ref|YP_001290089.1| translocation protein TolB [Haemophilus influenzae PittEE]
gi|386265223|ref|YP_005828715.1| Outer membrane integrity protein TolB [Haemophilus influenzae
R2846]
gi|166229979|sp|A5UAA5.1|TOLB_HAEIE RecName: Full=Protein TolB; Flags: Precursor
gi|148715496|gb|ABQ97706.1| translocation protein TolB precursor [Haemophilus influenzae
PittEE]
gi|309972459|gb|ADO95660.1| Outer membrane integrity protein TolB [Haemophilus influenzae
R2846]
Length = 427
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 46/206 (22%)
Query: 356 IKIAKSDGSKRWTLIKDRTA---FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412
+++A DG ++ I +R+A +WSP + + Y S F+++++ + + ++F
Sbjct: 184 VRVADYDGYNQF--IVNRSAQPIMSPAWSPDGQRLAYVS----FENKKSQLVVQDLNF-- 235
Query: 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
+ + G+N P+ SPDG L F S R G N++V+ A NG
Sbjct: 236 -------------GARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGA-NG-- 279
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
G QLT G +T P+WSP G+ I F+S+R S V + D SG V G
Sbjct: 280 -GTPTQLTSGAGNNTEPAWSPDGNSILFTSDRSG-------SPQVYRMDASG-GSATVVG 330
Query: 533 PEGSGDVDRERINHVCFSADGEWLLF 558
GS + SADG+ L+
Sbjct: 331 GRGSAQI----------SADGKTLVM 346
>gi|414163907|ref|ZP_11420154.1| protein tolB [Afipia felis ATCC 53690]
gi|410881687|gb|EKS29527.1| protein tolB [Afipia felis ATCC 53690]
Length = 447
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 33/175 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NL+V+D + +LTD P IDT PS++P G I F
Sbjct: 266 PRFSPDGQRIIMSLQQGGNSNLYVMDLRSKSTT----RLTDTPAIDTSPSYAPDGSRICF 321
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ G +RI +GS + +S G+++ FT
Sbjct: 322 ESDRGGKPQI-----YVMGAGGGAAQRISFG--DGS-------YSTPVWSPRGDYIAFTK 367
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDL 615
G A + ++K DGSG R LT +G+ N P + P ++ +
Sbjct: 368 QGGGQFA--------------IGIMKPDGSGERILT-SGFHNEGPTFAPNGRVVM 407
>gi|390448436|ref|ZP_10234056.1| translocation protein TolB [Nitratireductor aquibiodomus RA22]
gi|389666177|gb|EIM77632.1| translocation protein TolB [Nitratireductor aquibiodomus RA22]
Length = 437
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 58/115 (50%), Gaps = 13/115 (11%)
Query: 416 DDNNREEIPCDVKIL-TKEETGNNAF---PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471
DD N D++ T T +NA PS SPDG +VF S R G ++V+ A
Sbjct: 269 DDGNSNIFAMDLRSRNTTRLTTSNAIDTSPSYSPDGSQIVFTSDRGGRAQIYVMSAS--- 325
Query: 472 FNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526
GD ++++ G + P WSP+GDLIAF+ F + V++ DGSG R
Sbjct: 326 -GGDPKRISFGDGTYSTPVWSPRGDLIAFTKQTRG-----EFQIGVMRTDGSGER 374
Score = 42.7 bits (99), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 35 HEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHD 94
++ LTDG +I +F + Q I ++S G P++Y + + + EL+ + P F
Sbjct: 195 NQRFLTDGRAIVLTPRFSPTR-QEITYMSYEGGQPQVYLLQLETGQRELVGNFPGMTFAP 253
Query: 95 RPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFI 154
R ++ + + S +++ DL++ TRLT +D SPS S G I
Sbjct: 254 RFSPNGQQIVMSLLRDDGN------SNIFAMDLRSRNTTRLTTSNAIDTSPSYSPDGSQI 307
Query: 155 AVAS 158
S
Sbjct: 308 VFTS 311
>gi|307545156|ref|YP_003897635.1| translocation protein TolB [Halomonas elongata DSM 2581]
gi|307217180|emb|CBV42450.1| translocation protein TolB [Halomonas elongata DSM 2581]
Length = 429
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 111/274 (40%), Gaps = 51/274 (18%)
Query: 358 IAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD 416
+A +DG + + L D SWSP + + Y S F+ ER + + VS
Sbjct: 182 VADADGHNSQQALSSDEPIMSPSWSPDGRKLAYVS----FEGERPAIYVQEVS------- 230
Query: 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI 476
+ R VK+ + E G N+ PS SPDG+ L R G ++ +D + D+
Sbjct: 231 -SGRR-----VKLTSFE--GLNSAPSWSPDGRKLAVALSRDGQPEIYTIDI----GSRDL 278
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRH-------------NPDNVEAFSLYVIK---- 519
+++T+ P I+T P+WSP G + ++S+R P+ + Y +
Sbjct: 279 QRITNSPSIETEPAWSPDGRSLIYTSDRSGGPQIYRQALGGGEPERLTYTGNYNARARFA 338
Query: 520 PDGSGLRRIHVAGPEG----SGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQ 575
PDG + IH G G D+D R+ + + E N V+ + Q
Sbjct: 339 PDGEAIFLIH-KGNNGYQVARQDLDNGRLVEISDAQQAESPSVAPNGTMVI-----FATQ 392
Query: 576 FQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G L V DG RL + PAW P
Sbjct: 393 QGSRGVLGAVSADGRASFRLPAAQGDVREPAWSP 426
>gi|52424778|ref|YP_087915.1| translocation protein TolB [Mannheimia succiniciproducens MBEL55E]
gi|67461939|sp|Q65UN0.1|TOLB_MANSM RecName: Full=Protein TolB; Flags: Precursor
gi|52306830|gb|AAU37330.1| TolB protein [Mannheimia succiniciproducens MBEL55E]
Length = 431
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 24/150 (16%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
I++A DG ++ + + + +WSP K + Y S F++ ++ + +
Sbjct: 187 IRVADYDGFNQFIVNRSSQPIMSPAWSPDGKRLAYVS----FENRKSQLVV--------- 233
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+++ + + G+N P+ SPDG L F S + G N++V+ A NG G
Sbjct: 234 ------QDLGSGARKVVASFQGHNGAPAFSPDGSRLAFASNKEGQLNIYVMGA-NG---G 283
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
QLT G +T PSWSP G I F+S+R
Sbjct: 284 QPTQLTSGSGNNTEPSWSPDGSSILFTSDR 313
>gi|309750199|gb|ADO80183.1| Outer membrane integrity protein TolB [Haemophilus influenzae
R2866]
Length = 427
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 46/206 (22%)
Query: 356 IKIAKSDGSKRWTLIKDRTA---FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412
+++A DG ++ I +R+A +WSP + + Y S F+++++ + +
Sbjct: 184 VRVADYDGYNQF--IVNRSAQPIMSPAWSPDGQRLAYVS----FENKKSQLVV------- 230
Query: 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
+++ + + G+N P+ SPDG L F S R G N++V+ A NG
Sbjct: 231 --------QDLNSGTRKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGA-NG-- 279
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
G QLT G +T P+WSP G+ I F+S+R S V + D SG V G
Sbjct: 280 -GTPTQLTSGAGNNTEPAWSPDGNSILFTSDRSG-------SPQVYRMDASG-GSATVVG 330
Query: 533 PEGSGDVDRERINHVCFSADGEWLLF 558
GS + SADG+ L+
Sbjct: 331 GRGSAQI----------SADGKTLVM 346
>gi|119371048|sp|Q3A097.1|TOLB_PELCD RecName: Full=Protein TolB; Flags: Precursor
Length = 443
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 114/296 (38%), Gaps = 94/296 (31%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTS----TGPIFQSERATVQIARVSF 410
+ + +DG+ L R+ N +SP + VIYTS +++ + +T Q AR++F
Sbjct: 194 LYLMDTDGANALRLTDHRSIVLNPDFSPNGREVIYTSYRRGNPDLYRKQLSTGQEARLAF 253
Query: 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG 470
+ G N PDG+ + +G+ L +L G
Sbjct: 254 K-----------------------KGLNIAARFRPDGREIALTQSATGNPELMLL----G 286
Query: 471 EFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH------------------------- 505
R+LT ID PSWSP GD +AF S+R
Sbjct: 287 TDGSRRRRLTSHWGIDVDPSWSPAGDRLAFVSDRQGNPHIFVMDLLGGQTARLTANGKYN 346
Query: 506 -----NPDNVE---------AFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSA 551
+PD F +Y ++PDG+ RR+ G G+ + H +S
Sbjct: 347 ATPAWSPDGKRIAFTRLEKGVFDIYTVRPDGTDERRLTF----GPGNKE-----HPRWSP 397
Query: 552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
D +L+++++ +Y+++ DG+G+RR++ G + PAW
Sbjct: 398 DSRFLVYSSDQDGRKG--------------IYIMRADGTGIRRISAGGGQCQHPAW 439
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 79/204 (38%), Gaps = 39/204 (19%)
Query: 337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGP- 394
F PDG I N + + +DGS+R L + SWSP + + S
Sbjct: 263 FRPDGREIALTQSATGNPELMLLGTDGSRRRRLTSHWGIDVDPSWSPAGDRLAFVSDRQG 322
Query: 395 ---IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451
IF + Q AR++ NA P+ SPDGK +
Sbjct: 323 NPHIFVMDLLGGQTARLT-----------------------ANGKYNATPAWSPDGKRIA 359
Query: 452 FRSGRSGHKNLFVLDAVNGEFNG-DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV 510
F G V D +G D R+LT GP P WSP + +SS++ +
Sbjct: 360 FTRLEKG-----VFDIYTVRPDGTDERRLTFGPGNKEHPRWSPDSRFLVYSSDQDGRKGI 414
Query: 511 EAFSLYVIKPDGSGLRRIHVAGPE 534
Y+++ DG+G+RRI G +
Sbjct: 415 -----YIMRADGTGIRRISAGGGQ 433
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 82/201 (40%), Gaps = 37/201 (18%)
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS-NRHNPD 508
+ + R+GHK L+++D + +LTD I P +SP G + ++S R NPD
Sbjct: 182 IAYIDNRTGHKELYLMDTDGA----NALRLTDHRSIVLNPDFSPNGREVIYTSYRRGNPD 237
Query: 509 NVE-----------AFSLYV-----IKPDGS--GLRRIHVAGPE----GSGDVDRERI-N 545
AF + +PDG L + PE G+ R R+ +
Sbjct: 238 LYRKQLSTGQEARLAFKKGLNIAARFRPDGREIALTQSATGNPELMLLGTDGSRRRRLTS 297
Query: 546 HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTP 605
H D W + + +++ + Q ++V+ L G RLT NG N TP
Sbjct: 298 HWGIDVDPSW--------SPAGDRLAFVSDRQGNPHIFVMDLLGGQTARLTANGKYNATP 349
Query: 606 AWHPGNQLDLGKLRLEDDIGD 626
AW P + + RLE + D
Sbjct: 350 AWSPDGK-RIAFTRLEKGVFD 369
>gi|421447586|ref|ZP_15896984.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|396074607|gb|EJI82894.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
Length = 430
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 67/125 (53%), Gaps = 18/125 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P G
Sbjct: 245 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDGQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 TLAFTSDQAGRPQV-----YKMNINGGAAQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTAN 561
+ ++
Sbjct: 347 VMVSS 351
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGTKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I R + DG+ L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQITDG---------RSNNTEPTWFPDGQTLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y + ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKMNINGGAAQRITWEGSQN 334
>gi|393769225|ref|ZP_10357753.1| beta-propeller repeat-containing to-pal system protein TolB
[Methylobacterium sp. GXF4]
gi|392725466|gb|EIZ82803.1| beta-propeller repeat-containing to-pal system protein TolB
[Methylobacterium sp. GXF4]
Length = 448
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 87/200 (43%), Gaps = 44/200 (22%)
Query: 418 NNREEIPCDVKILTKEETGN----NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
N + + D+ + N + P+ +PDG + F S R G + ++V+ G
Sbjct: 280 GNADIVTMDIATKAQHSVTNGMAIDTSPTYAPDGSQIAFESDRGGSQQVYVM----GADG 335
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI----H 529
+ ++T G + P+WSP+GDLIA++ R+ F++ V KPDG+G R + H
Sbjct: 336 SNPHRITFGAGSASQPAWSPRGDLIAYTRQRNG-----GFAICVSKPDGTGERVLTEGYH 390
Query: 530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589
GP F+ +G+++LF + G Q G L++V + G
Sbjct: 391 NEGP--------------TFAPNGQYVLFFRDPGG------------QGGGKLFMVDITG 424
Query: 590 SGLRRLTWNGYENGTPAWHP 609
+ + Y + P W P
Sbjct: 425 KVEQPIPTPSYAS-DPTWSP 443
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 116/291 (39%), Gaps = 62/291 (21%)
Query: 360 KSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNN 419
K + KR ++ A + + E ++ P Q ++F +
Sbjct: 188 KENRRKRLMVMDQDGANVRAITSGETSIVAPRYSPATQD---------IAFMSQATGHQP 238
Query: 420 REEIPCDVKILTKEETGN----NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGD 475
R ++ +++ ++ GN +A P SPDG+ LV + G+ ++ +D +
Sbjct: 239 RVQV-INLETGARQALGNVDSMSASPRFSPDGRRLVMSVQQGGNADIVTMDIATKAQH-- 295
Query: 476 IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEG 535
+T+G IDT P+++P G IAF S+R V YV+ DGS RI G
Sbjct: 296 --SVTNGMAIDTSPTYAPDGSQIAFESDRGGSQQV-----YVMGADGSNPHRITF----G 344
Query: 536 SGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL 595
+G + +S G+ + +T A VS P DG+G R L
Sbjct: 345 AGSASQP-----AWSPRGDLIAYTRQRNGGFAICVSKP--------------DGTGERVL 385
Query: 596 TWNGYENGTPAWHPGNQLDL----------GKLRLEDDIGDKLRGQFDEPL 636
T GY N P + P Q L GKL + D + G+ ++P+
Sbjct: 386 T-EGYHNEGPTFAPNGQYVLFFRDPGGQGGGKLFMVD-----ITGKVEQPI 430
>gi|87198418|ref|YP_495675.1| translocation protein TolB [Novosphingobium aromaticivorans DSM
12444]
gi|119371031|sp|Q2GBD2.1|TOLB1_NOVAD RecName: Full=Protein TolB 1; Flags: Precursor
gi|87134099|gb|ABD24841.1| TolB-like protein [Novosphingobium aromaticivorans DSM 12444]
Length = 451
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 106/259 (40%), Gaps = 54/259 (20%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ I SDG+ R+ TA +SP K ++Y S + + R + +
Sbjct: 202 LAIMDSDGANHRYLTSGQATALTPRFSPDYKSILYLS----YLNGRPRIYV--------- 248
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++ + + L E G P SPDGK++++ +G+ +++ + A G
Sbjct: 249 ------YDLAANTQRLVTETPGPTFAPRWSPDGKWILYSMATAGNTDIYKVPASGGAS-- 300
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
++LTD P ID S+SP G I F S+R + YV+ DGS RRI G
Sbjct: 301 --QRLTDTPGIDVGGSFSPDGSRIVFESDRSGSQQI-----YVMNADGSDHRRISFFG-- 351
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR 594
R +S G+ + FT +G + + VV G LR
Sbjct: 352 -------GRAATPEWSPRGDQIAFTHIVGNLR---------------IAVVSPGGGDLRY 389
Query: 595 LTWNGYENGTPAWHPGNQL 613
LT + +++ P W P ++
Sbjct: 390 LT-DSWQDEAPTWSPNGRI 407
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 74/199 (37%), Gaps = 29/199 (14%)
Query: 335 PSFSPDGGLIVFNHDFELNAGI-KIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTG 393
P +SPDG I+++ N I K+ S G+ + S+SP ++
Sbjct: 269 PRWSPDGKWILYSMATAGNTDIYKVPASGGASQRLTDTPGIDVGGSFSPDGSRIV----- 323
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453
F+S+R+ Q V D SD G A P SP G + F
Sbjct: 324 --FESDRSGSQQIYV-MNADGSDHRRISFF-----------GGRAATPEWSPRGDQIAFT 369
Query: 454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF 513
H + AV GD+R LTD W D P+WSP G +I F
Sbjct: 370 -----HIVGNLRIAVVSPGGGDLRYLTDS-WQDEAPTWSPNGRIIQFFRTEKGSGKA--- 420
Query: 514 SLYVIKPDGSGLRRIHVAG 532
S++ + G RR+ G
Sbjct: 421 SVWQVDLTGRNERRLSTPG 439
>gi|300704850|ref|YP_003746453.1| protein tolb, component of the tol-pal system [Ralstonia
solanacearum CFBP2957]
gi|299072514|emb|CBJ43864.1| protein tolB, component of the tol-pal system [Ralstonia
solanacearum CFBP2957]
Length = 434
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 113/289 (39%), Gaps = 74/289 (25%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG+ + L SWSP V Y S F+S + V +
Sbjct: 182 LQISDSDGANPQIALTSSEPIISPSWSPDGTKVAYVS----FESRKPVVYV--------- 228
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++ + + + GNN+ P+ SPDG+ + R G+ +++ VN + +G
Sbjct: 229 ------HDLVTGRRAVISNQKGNNSAPAWSPDGRRVAVALSRDGNTQIYL---VNADGSG 279
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-- 532
+R+LT IDT PS+SP G I F+S+R + + + V D G +R+ G
Sbjct: 280 -LRRLTRSSAIDTEPSFSPDGHSIYFTSDRGGAPQI--YRMPVDGEDAGGAQRVTFKGGY 336
Query: 533 -------PEG---------------------SGDV----DRERINHVCFSADGEWLLFTA 560
P+G +GDV D F+A+G+++L+
Sbjct: 337 NTSPRVSPDGKLLAYISRVGGAFKLYVQDLSNGDVTGLTDTSYDESPSFAANGKFILYAT 396
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+G L V DG + L+ + PAW P
Sbjct: 397 RVGGRSV--------------LAAVSTDGRTRQTLSLQAGQVREPAWGP 431
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 76/174 (43%), Gaps = 24/174 (13%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIY 389
N S P++SPDG + + N I + +DGS L + S+SP + H IY
Sbjct: 245 NNSAPAWSPDGRRVAVALSRDGNTQIYLVNADGSGLRRLTRSSAIDTEPSFSP-DGHSIY 303
Query: 390 TSTGPIFQSERATV-QIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGK 448
F S+R QI R+ +D D + + + G N P SPDGK
Sbjct: 304 ------FTSDRGGAPQIYRMP--VDGEDAGGAQRVTF--------KGGYNTSPRVSPDGK 347
Query: 449 FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
L + S G L+V D NG+ G LTD + D PS++ G I +++
Sbjct: 348 LLAYISRVGGAFKLYVQDLSNGDVTG----LTDTSY-DESPSFAANGKFILYAT 396
>gi|118588325|ref|ZP_01545734.1| translocation protein TolB precursor [Stappia aggregata IAM 12614]
gi|118439031|gb|EAV45663.1| translocation protein TolB precursor [Stappia aggregata IAM 12614]
Length = 189
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 77/173 (44%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ +V + G+ N+F +D + + +LT+ IDT PS+SP G I F
Sbjct: 5 PRFSPDGQSVVMSLQQGGNANIFKMDLRSRQ----TTRLTNDAAIDTSPSFSPDGSQIVF 60
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LYV+ G G +RI GP R + +S G+ + FT
Sbjct: 61 ESDRGGTQQ-----LYVMSAGGGGAQRISF-GP--------GRYSTPVWSPRGDLIAFT- 105
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
Q Q + V++ DG G R LT GY N PAW P ++
Sbjct: 106 -------------KQHQGRFMIGVMRPDGKGERILT-EGYHNEGPAWSPNGRV 144
>gi|456062612|ref|YP_007501582.1| translocation protein TolB [beta proteobacterium CB]
gi|455439909|gb|AGG32847.1| translocation protein TolB [beta proteobacterium CB]
Length = 435
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 84/191 (43%), Gaps = 42/191 (21%)
Query: 379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN 438
SWSP K V Y S F+ + + + E+ +I + GNN
Sbjct: 207 SWSPDGKKVAYVS----FEDRKPVIYV---------------HELATGRRISLSNQKGNN 247
Query: 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
+ P+ SPDGK L + G+ ++ +N + G +++LT G IDT P +S G I
Sbjct: 248 SAPAWSPDGKKLAVSLSKDGNTQIY---GINADGTG-LQRLTRGRTIDTEPQYSADGRYI 303
Query: 499 AFSSNR-HNPDNVEAFSLYVIKPDG---SGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
F+S+R NP +Y + +G G +RI G V RI S DG+
Sbjct: 304 YFTSDRGGNPQ------IYRMSAEGEQVEGAKRITYK----QGFVTSPRI-----SPDGK 348
Query: 555 WLLFTANLGAV 565
+L + AN+G
Sbjct: 349 YLAYIANIGGA 359
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 22/186 (11%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYT 390
N S P++SPDG + + + N I +DG+ L + RT + IY
Sbjct: 246 NNSAPAWSPDGKKLAVSLSKDGNTQIYGINADGTGLQRLTRGRTIDTEPQYSADGRYIY- 304
Query: 391 STGPIFQSERA-TVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF 449
F S+R QI R+S + E++ +I K+ G P SPDGK+
Sbjct: 305 -----FTSDRGGNPQIYRMSAE--------GEQVEGAKRITYKQ--GFVTSPRISPDGKY 349
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDN 509
L + + G L++L+ GD + LTDG D PS++ G + +S+
Sbjct: 350 LAYIANIGGAFRLYILNLA----TGDSQALTDGTS-DESPSFAANGRYVLYSTKVGGKRV 404
Query: 510 VEAFSL 515
+ A S+
Sbjct: 405 LAAVSV 410
>gi|410666310|ref|YP_006918681.1| translocation protein TolB [Simiduia agarivorans SA1 = DSM 21679]
gi|380034903|gb|AFD30847.1| TolB [Simiduia agarivorans SA1 = DSM 21679]
gi|409028667|gb|AFV00952.1| translocation protein TolB [Simiduia agarivorans SA1 = DSM 21679]
Length = 428
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 108/280 (38%), Gaps = 59/280 (21%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A SDG++ R L +WSP K + Y S F++ RA V + ++
Sbjct: 179 LMLADSDGARPRLVLPSKHPIMSPTWSPDGKRIAYVS----FETGRAAVFVQELA----- 229
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
R E + K G N PS SPDG L F + G+ ++ L +
Sbjct: 230 ---TGRREQVTNFK-------GLNGAPSFSPDGGRLAFVLSKDGNPEIYTLHLGTRQLT- 278
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL-RRIHVAG- 532
++T IDT PSW+P G + F+SNR + +L SG+ R+ AG
Sbjct: 279 ---RVTQHFAIDTEPSWTPDGKALVFTSNRGGKPQIYKVTL------ASGMVERLTFAGD 329
Query: 533 --------PEGSGDVDRERINHVCFSA-----DGEWLLFTANL----------GAVMAEP 569
P+G V R N V A G+ + T GA++
Sbjct: 330 YNARARVSPDGKSLVMVHRSNGVFHIATQDIQSGDLRILTETYLDESPSIAPNGALLM-- 387
Query: 570 VSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ ++Q G L V LD RL + PAW P
Sbjct: 388 --YATRYQGKGILAAVSLDAGVKFRLPSKQGDVREPAWSP 425
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 36/192 (18%)
Query: 330 LNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN--SWSPTEKHV 387
LNG+ PSFSPDGG + F + N I G+++ T + A SW+P K +
Sbjct: 242 LNGA-PSFSPDGGRLAFVLSKDGNPEIYTLHL-GTRQLTRVTQHFAIDTEPSWTPDGKAL 299
Query: 388 IYTSTG----PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSC 443
++TS I++ A+ + R++F D NA
Sbjct: 300 VFTSNRGGKPQIYKVTLASGMVERLTFAGD-----------------------YNARARV 336
Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503
SPDGK LV +G ++ D +GD+R LT+ ++D PS +P G L+ +++
Sbjct: 337 SPDGKSLVMVHRSNGVFHIATQDIQ----SGDLRILTE-TYLDESPSIAPNGALLMYATR 391
Query: 504 RHNPDNVEAFSL 515
+ A SL
Sbjct: 392 YQGKGILAAVSL 403
>gi|378768061|ref|YP_005196531.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Pantoea ananatis LMG 5342]
gi|386015105|ref|YP_005933384.1| protein TolB precursor [Pantoea ananatis AJ13355]
gi|386080163|ref|YP_005993688.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Pantoea ananatis PA13]
gi|327393166|dbj|BAK10588.1| protein TolB precursor [Pantoea ananatis AJ13355]
gi|354989344|gb|AER33468.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Pantoea ananatis PA13]
gi|365187544|emb|CCF10494.1| Tol-Pal system beta propeller repeat protein TolB [Pantoea ananatis
LMG 5342]
Length = 431
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 10/118 (8%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG + T P+W P
Sbjct: 246 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRYNSTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS-GDVDRERINHVCFSADG 553
+A++S D A +Y I +G +RI G + DV + + V S G
Sbjct: 302 TLAYTS-----DQAGAPQIYKIGINGGSPQRITWEGAQNQDADVASDGKSMVMISTSG 354
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG + + + SG K+ V+ ++ NG +RQ+ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKVAYVTFESG-KSALVIQTLS---NGAVRQVASFPRHNGAPAFSPDGTKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I +G R + D + L +T+
Sbjct: 262 ALSKTG-----SLNLYVMDLASGQIRQIT----DG-----RYNSTEPTWFPDSQTLAYTS 307
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +Y + ++G +R+TW G +N
Sbjct: 308 DQAGAP--------------QIYKIGINGGSPQRITWEGAQN 335
>gi|426402172|ref|YP_007021143.1| adventurous gliding motility protein W [Bdellovibrio bacteriovorus
str. Tiberius]
gi|425858840|gb|AFX99875.1| adventurous gliding motility protein W [Bdellovibrio bacteriovorus
str. Tiberius]
Length = 461
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 31/178 (17%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497
N P+ SP G L F S R+G ++ DA +++++T ++ PSWSP G
Sbjct: 314 NVEPTVSPQG-LLSFSSDRAGRPMIYTADAAGN----NVKRITFAGVFNSSPSWSPDGKK 368
Query: 498 IAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSADGEWL 556
IAF+ N F ++V+ DG+G+ R+ A P G + + FS DG ++
Sbjct: 369 IAFAGQSDN-----NFDIFVMNADGTGMIRLTSAKKPNGRMASNEDP----SFSPDGRFV 419
Query: 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLD 614
++T+N + NQ +Y+ +DG+ RR+T + P W N +D
Sbjct: 420 MYTSNR--------TGKNQ------IYISTVDGTEERRVTNDNNNYYKPKWS--NNID 461
>gi|39934195|ref|NP_946471.1| translocation protein TolB [Rhodopseudomonas palustris CGA009]
gi|192289721|ref|YP_001990326.1| translocation protein TolB [Rhodopseudomonas palustris TIE-1]
gi|67461966|sp|Q6NAR1.1|TOLB_RHOPA RecName: Full=Protein TolB; Flags: Precursor
gi|39648043|emb|CAE26563.1| putative tolB protein precursor, periplasmic protein involved in
the tonb-independent uptake of group A colicins
[Rhodopseudomonas palustris CGA009]
gi|192283470|gb|ACE99850.1| Tol-Pal system beta propeller repeat protein TolB [Rhodopseudomonas
palustris TIE-1]
Length = 444
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NLFV+D + +LTD P IDT PS++P G I F
Sbjct: 261 PRFSPDGQRIIMSLQQGGNSNLFVMDLRSKATT----RLTDTPAIDTSPSYAPDGSRICF 316
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + Y++ G +RI +GS + +S G+++ FT
Sbjct: 317 ESDRGGKPQI-----YIMPASGGQAQRISFG--DGS-------YSTPVWSPRGDYIAFTK 362
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G A + ++K DGSG R LT +G+ N P + P ++
Sbjct: 363 QGGGQFA--------------IGIMKPDGSGERILT-SGFHNEGPTFAPNGRV 400
>gi|407697048|ref|YP_006821836.1| protein tolB [Alcanivorax dieselolei B5]
gi|407254386|gb|AFT71493.1| Protein tolB [Alcanivorax dieselolei B5]
Length = 425
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 122/315 (38%), Gaps = 38/315 (12%)
Query: 311 TIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI 370
T L VA + + L G +FS + N +L ++ A +DG + T++
Sbjct: 131 TKAQLRDVAHAISDRIYEELTGIPGAFSTKILYVTHNRGAKLPYQLQYADADGHRVKTIL 190
Query: 371 KDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI 429
+ SWSP + Y VSF+ + + + +
Sbjct: 191 SSAEPIMSPSWSPDGSKIAY------------------VSFENNGKPNIYVHNLASGQRS 232
Query: 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489
+ E G N PS SPDG+ LV + G+ L++++ VNG G + +LTD IDT
Sbjct: 233 VVSRERGINGAPSWSPDGQRLVITLSKDGNPELYMVN-VNG---GGLTRLTDNYGIDTEA 288
Query: 490 SWSPKGDLIAFSSNRHNPDNVEAFSL-------------YVIKPDGS--GLRRIHVAGPE 534
W P G+ + F+S+R + ++ Y +PD + G ++V
Sbjct: 289 RWMPDGEHVVFTSSRSGGPQIYMLNINDKSARRVSFEGNYNARPDVTPDGRYLVYVHRRN 348
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR 594
GS +V + + F + + + A V + Q + G L V +DG
Sbjct: 349 GSFNVGVQDLQRGTFDIVTQTNMDESPSVAPNGSMVIYGTQRRGTGVLEAVSIDGRVKVE 408
Query: 595 LTWNGYENGTPAWHP 609
L E PAW P
Sbjct: 409 LPSKEGEVREPAWSP 423
>gi|255930285|ref|XP_002556702.1| Pc06g00930 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581315|emb|CAP79086.1| Pc06g00930 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 673
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 27/184 (14%)
Query: 437 NNAFPSCSPDGKFLVFRS-------GRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489
N+ FPS S DGK +VFR G L +LD G+ + W D +P
Sbjct: 502 NSGFPSFSHDGKKIVFRIWGANSTLGDKSQLGLRLLDLETGK-----TSVLSTEW-DNLP 555
Query: 490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCF 549
S+SP G I F+ + + + + ++ DG+ +R + +G + H +
Sbjct: 556 SFSPDGKRIVFTRKTSDYN----YDICTMRADGTDVRVLTSSGANDA---------HAVW 602
Query: 550 SADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ DG + F++ + E + + FQPYG + V+ DGS R LT + +E+ P + P
Sbjct: 603 TWDGR-IAFSSGMFGFQYECALYDDTFQPYGQVVVMNADGSNKRVLTDSIWEDSMPLYVP 661
Query: 610 GNQL 613
+ L
Sbjct: 662 NSAL 665
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 443 CSPDGKFLVFRSGRSGHK-NLFVLDAVNGE--------FNGDIRQLTDGPWIDTMPSWSP 493
SP+G+ + + S +G K N++V+D +G+ L +G + PSWSP
Sbjct: 135 MSPNGRQIAYVSTANGFKANIWVMDLESGKKWNLTDTATTAADDSLPNGYF---RPSWSP 191
Query: 494 KGDLIAFSSNRHNP---------------DNVEAFSLYVIKPDGSGLRRI 528
G IAFSS+R++ ++ + S+Y I+P+GS R +
Sbjct: 192 DGQWIAFSSDRNSGWYGHGDPIFQGVTGWEHTQELSIYAIRPNGSDFRSV 241
>gi|349687686|ref|ZP_08898828.1| translocation protein TolB [Gluconacetobacter oboediens 174Bp2]
Length = 455
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 9/86 (10%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG +VF S R G L+++ A GD ++++ G P WSP+GDLIAF
Sbjct: 312 PSYSPDGSQIVFNSDRGGSPQLYIMSAA----GGDAKRISYGHGHYGSPVWSPRGDLIAF 367
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLR 526
S + +FSL V+ PDG+G R
Sbjct: 368 SRIANG-----SFSLGVMAPDGTGER 388
Score = 43.5 bits (101), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489
L + +G + P +PDG+ +V R +++ +D RQ+T IDT P
Sbjct: 257 LLGDFSGISFAPRFAPDGRSVVLSVTRGSGSDIYTVDLATMAR----RQITSSGAIDTSP 312
Query: 490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
S+SP G I F+S+R LY++ G +RI
Sbjct: 313 SYSPDGSQIVFNSDRGGSPQ-----LYIMSAAGGDAKRI 346
>gi|254477250|ref|ZP_05090636.1| Tol-Pal system beta propeller repeat protein TolB [Ruegeria sp.
R11]
gi|214031493|gb|EEB72328.1| Tol-Pal system beta propeller repeat protein TolB [Ruegeria sp.
R11]
Length = 446
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 103/246 (41%), Gaps = 34/246 (13%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDR--TAFYNSWSPTEKHVIYTST 392
P FSP G +++ I + +R L D +F ++P + V+Y+
Sbjct: 217 PRFSPTGDRVLYTSYESGFPQIHVLDVGSVQRRVLSSDNGIMSFAPRFAPDGRTVVYS-- 274
Query: 393 GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452
Q++ I + LD + R+ + I T PS SPDG +VF
Sbjct: 275 ----QAQGGNTDI----YTLD-INSGARQRLTSAPSIETA--------PSYSPDGSQIVF 317
Query: 453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA 512
S RSG L+V+ A GE R+++ G P WSP+GDLIAF+ N
Sbjct: 318 ESDRSGAPQLYVMPASGGE----ARRISFGAGRYGTPVWSPRGDLIAFTKQ-----NKGR 368
Query: 513 FSLYVIKPDGSGLRRIHVA----GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAE 568
F + V++ DGS R + + GP S + +G LL++ ++ +
Sbjct: 369 FHIGVMRTDGSEERLLTASFLDEGPTWSPNGRVIMFTRETQGENGRALLYSVDITGRNLK 428
Query: 569 PVSWPN 574
PV P+
Sbjct: 429 PVRTPD 434
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 35/187 (18%)
Query: 428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ-LTDGPWID 486
++L+ + + P +PDG+ +V+ + G+ +++ LD N RQ LT P I+
Sbjct: 249 RVLSSDNGIMSFAPRFAPDGRTVVYSQAQGGNTDIYTLD-----INSGARQRLTSAPSIE 303
Query: 487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINH 546
T PS+SP G I F S+R A LYV+ G RRI G+G R
Sbjct: 304 TAPSYSPDGSQIVFESDRSG-----APQLYVMPASGGEARRISF----GAG-----RYGT 349
Query: 547 VCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPA 606
+S G+ + FT Q + + V++ DGS R LT + + G P
Sbjct: 350 PVWSPRGDLIAFT--------------KQNKGRFHIGVMRTDGSEERLLTASFLDEG-PT 394
Query: 607 WHPGNQL 613
W P ++
Sbjct: 395 WSPNGRV 401
>gi|42521812|ref|NP_967192.1| adventurous gliding motility protein W [Bdellovibrio bacteriovorus
HD100]
gi|67461965|sp|Q6MRB2.1|TOLB_BDEBA RecName: Full=Protein TolB; Flags: Precursor
gi|39574342|emb|CAE77846.1| Adventurous gliding motility protein W [Bdellovibrio bacteriovorus
HD100]
Length = 461
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 31/178 (17%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497
N P+ SP G L F S R+G ++ DA +++++T ++ PSWSP G
Sbjct: 314 NVEPTVSPQG-LLSFSSDRAGRPMIYTADAAGN----NVKRITFAGVFNSSPSWSPDGKK 368
Query: 498 IAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSADGEWL 556
IAF+ N F ++V+ DG+G+ R+ A P G + + FS DG ++
Sbjct: 369 IAFAGQSDN-----NFDIFVMNADGTGMIRLTSAKKPNGRMASNEDP----SFSPDGRFV 419
Query: 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLD 614
++T+N + NQ +Y+ +DG+ RR+T + P W N +D
Sbjct: 420 MYTSNR--------TGKNQ------IYISTVDGTEERRVTNDNNNYYKPKWS--NNID 461
>gi|148827587|ref|YP_001292340.1| translocation protein TolB [Haemophilus influenzae PittGG]
gi|166229980|sp|A5UGQ1.1|TOLB_HAEIG RecName: Full=Protein TolB; Flags: Precursor
gi|148718829|gb|ABQ99956.1| hypothetical protein CGSHiGG_05070 [Haemophilus influenzae PittGG]
Length = 427
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 46/206 (22%)
Query: 356 IKIAKSDGSKRWTLIKDRTA---FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412
+++A DG ++ I +R+A +WSP + + Y S F+++++ + +
Sbjct: 184 VRVADYDGYNQF--IVNRSAQPIMSPAWSPDGQRLAYVS----FENKKSQLVV------- 230
Query: 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
+++ + + G+N P+ SPDG L F S R G N++V+ A NG
Sbjct: 231 --------QDLNSGSRKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGA-NG-- 279
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
G QLT G +T P+WSP G+ I F+S+R S V + D SG V G
Sbjct: 280 -GTPTQLTSGAGNNTEPAWSPDGNSILFTSDRSG-------SPQVYRMDASGGNATAVGG 331
Query: 533 PEGSGDVDRERINHVCFSADGEWLLF 558
GS + SADG+ L+
Sbjct: 332 -RGSAQI----------SADGKTLVM 346
>gi|421889081|ref|ZP_16320141.1| protein tolB, component of the tol-pal system [Ralstonia
solanacearum K60-1]
gi|378965501|emb|CCF96889.1| protein tolB, component of the tol-pal system [Ralstonia
solanacearum K60-1]
Length = 432
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG+ + L + SWSP V Y S F+S + V +
Sbjct: 180 LQISDSDGANPQIALTSNEPIISLSWSPDGTKVAYVS----FESRKPVVYV--------- 226
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++ + + + GNN+ P+ SPDG+ + R G+ +++ VN + +G
Sbjct: 227 ------HDLVTGRRAVISNQKGNNSAPAWSPDGRRVAVALSRDGNTQIYL---VNADGSG 277
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
+R+LT IDT PS+SP G I F+S+R + + + V D G +R+ G
Sbjct: 278 -LRRLTRSSAIDTEPSFSPDGHSIYFTSDRGGAPQI--YRMPVDGEDAGGAQRVTFKG 332
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 76/174 (43%), Gaps = 24/174 (13%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIY 389
N S P++SPDG + + N I + +DGS L + S+SP + H IY
Sbjct: 243 NNSAPAWSPDGRRVAVALSRDGNTQIYLVNADGSGLRRLTRSSAIDTEPSFSP-DGHSIY 301
Query: 390 TSTGPIFQSERATV-QIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGK 448
F S+R QI R+ +D D + + + G N P SPDGK
Sbjct: 302 ------FTSDRGGAPQIYRMP--VDGEDAGGAQRVTF--------KGGYNTSPRVSPDGK 345
Query: 449 FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
L + S G L+V D NG+ G LTD + D PS++ G I +++
Sbjct: 346 LLAYISRVGGAFKLYVQDLSNGDVTG----LTDTSY-DESPSFAANGKFILYAT 394
>gi|145297814|ref|YP_001140655.1| translocation protein TolB [Aeromonas salmonicida subsp.
salmonicida A449]
gi|166988074|sp|A4SJ35.1|TOLB_AERS4 RecName: Full=Protein TolB; Flags: Precursor
gi|142850586|gb|ABO88907.1| Periplasmic component of the Tol biopolymer transport system
[Aeromonas salmonicida subsp. salmonicida A449]
Length = 441
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/328 (21%), Positives = 125/328 (38%), Gaps = 61/328 (18%)
Query: 310 STIP--HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW 367
+TIP + A + ++ RL G +F + + ++I+ DG
Sbjct: 144 ATIPGAQMRQFAHRISDIVYERLTGERGAFLTRIAYVSIEQGAQFPYQLRISDYDGYNEK 203
Query: 368 TLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD 426
TL++ R + +WSP + Y S F+++++ + + ++I
Sbjct: 204 TLLRSREPLMSPAWSPDGSKLAYVS----FENQKSEIYV---------------QDIYNQ 244
Query: 427 VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID 486
+ L G N P SPDG+ L + G +++V+D + + ++T+ ID
Sbjct: 245 QRSLISSFRGINGAPKWSPDGRRLAIVLSKDGQPDIYVIDVASKQLT----RVTNTRVID 300
Query: 487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYV-----------------IKPDGSGLRRIH 529
T P+W P G + F+S R + + +L + PDG + +
Sbjct: 301 TEPAWMPDGQTLIFTSERGGKPQIYSVNLATGVTRRMTWEGESNQGASVTPDGKSM--VM 358
Query: 530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQ--------FQPYGD 581
V +G + R+ + G L+ T + A+ P PN +Q
Sbjct: 359 VTRVQGQYRIARQDMES------GAMLVLTQS--ALDESPSVAPNGSMIIYATIYQGRKS 410
Query: 582 LYVVKLDGSGLRRLTWNGYENGTPAWHP 609
L +V DG L + E PAW P
Sbjct: 411 LALVSTDGRFKAVLPTSSGEIRAPAWSP 438
>gi|403049520|ref|ZP_10904004.1| tolB protein [SAR86 cluster bacterium SAR86D]
Length = 425
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 87/194 (44%), Gaps = 41/194 (21%)
Query: 312 IPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK 371
I L+ VAS R+L + F GGL +F+LN ++ +DGS L+K
Sbjct: 148 ITGLKGVAST----RLLYVTEEF-----SGGL----SEFKLN----VSDADGSNEQILLK 190
Query: 372 DRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL 430
+ SWSP K V Y S F++ A V I ++ R EI + K
Sbjct: 191 SYEPIISPSWSPNSKQVAYVS----FETGMAKVFIQNIA--------TGRREIVLENKFQ 238
Query: 431 TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS 490
PS SP+GKF+ + G+ +++L+ N ++ +LT+ IDT S
Sbjct: 239 ISS-------PSWSPNGKFMSLTLYQDGNAEIYILNLKNK----NLTRLTNHYSIDTESS 287
Query: 491 WSPKGDLIAFSSNR 504
WSP G I F+S R
Sbjct: 288 WSPNGSKIMFTSGR 301
>gi|311069718|ref|YP_003974641.1| acylaminoacyl-peptidase [Bacillus atrophaeus 1942]
gi|419821916|ref|ZP_14345505.1| putative acylaminoacyl-peptidase [Bacillus atrophaeus C89]
gi|310870235|gb|ADP33710.1| putative acylaminoacyl-peptidase [Bacillus atrophaeus 1942]
gi|388473991|gb|EIM10725.1| putative acylaminoacyl-peptidase [Bacillus atrophaeus C89]
Length = 658
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 35/183 (19%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHK-NLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
N+ P SPDG+ L F S R G L++L GE R+LTD P+ + P WSP G
Sbjct: 65 KNSEPRWSPDGRQLAFISDREGDAPQLYILSTDGGE----ARKLTDIPYGVSQPVWSPDG 120
Query: 496 DLIAFSSN-----------RHNPDNVEAFSLYVI--KPDGSGLRR------IHVAGPEGS 536
+ S N + DN E ++ + K DG GL + I V+ G
Sbjct: 121 CSLLLSVNLAASEHVNDKEKAEHDNNEPVEIHSLTYKKDGKGLIKGTYAQIILVSAVTGE 180
Query: 537 -GDVDRERINHV--CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR 593
+ + +H+ FS DG+ ++FTANL + +PY D+Y++ LD S +
Sbjct: 181 IKQLTAHKADHLDPVFSPDGKSIVFTANL-------TDQDDASKPY-DVYMMSLDSSDVT 232
Query: 594 RLT 596
++T
Sbjct: 233 QIT 235
>gi|291616740|ref|YP_003519482.1| TolB [Pantoea ananatis LMG 20103]
gi|291151770|gb|ADD76354.1| TolB [Pantoea ananatis LMG 20103]
Length = 453
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 10/118 (8%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG + T P+W P
Sbjct: 268 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRYNSTEPTWFPDSQ 323
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS-GDVDRERINHVCFSADG 553
+A++S D A +Y I +G +RI G + DV + + V S G
Sbjct: 324 TLAYTS-----DQAGAPQIYKIGINGGSPQRITWEGAQNQDADVASDGKSMVMISTSG 376
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG + + + SG K+ V+ ++ NG +RQ+ P + P++SP G +AF
Sbjct: 228 PAWSPDGSKVAYVTFESG-KSALVIQTLS---NGAVRQVASFPRHNGAPAFSPDGTKLAF 283
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I +G R + D + L +T+
Sbjct: 284 ALSKTG-----SLNLYVMDLASGQIRQIT----DG-----RYNSTEPTWFPDSQTLAYTS 329
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +Y + ++G +R+TW G +N
Sbjct: 330 DQAGAP--------------QIYKIGINGGSPQRITWEGAQN 357
>gi|119356690|ref|YP_911334.1| WD40 domain-containing protein [Chlorobium phaeobacteroides DSM
266]
gi|119354039|gb|ABL64910.1| WD40 domain protein beta Propeller [Chlorobium phaeobacteroides DSM
266]
Length = 442
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 31/172 (18%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G + P+ SPDG + F S R+G +F++D +G R+LT +T PSWSP G
Sbjct: 298 GIDLSPTFSPDGSRMAFVSSRNGLPQIFIMDVSSGL----TRRLTYSGRYNTQPSWSPGG 353
Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW 555
D IA+S+ + + +++ I DG+GL+++ SG + E +S DG
Sbjct: 354 DKIAYSTWEKSGE----INIFTINADGTGLKKLT------SGSRENE---APSWSPDGSM 400
Query: 556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
++F +N Q L+V+ G +RL E P+W
Sbjct: 401 IVFASNR--------------QGNKKLFVMGSGGENQKRLLQMDGEQMQPSW 438
Score = 45.4 bits (106), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 66/161 (40%), Gaps = 27/161 (16%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAK-SDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTG 393
P+FSPDG + F I I S G R R SWSP + Y++
Sbjct: 303 PTFSPDGSRMAFVSSRNGLPQIFIMDVSSGLTRRLTYSGRYNTQPSWSPGGDKIAYST-- 360
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGN--NAFPSCSPDGKFLV 451
+ S + N I D L K +G+ N PS SPDG +V
Sbjct: 361 ------------------WEKSGEINIFTINADGTGLKKLTSGSRENEAPSWSPDGSMIV 402
Query: 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
F S R G+K LFV+ + GE + Q+ DG + PSWS
Sbjct: 403 FASNRQGNKKLFVMGS-GGENQKRLLQM-DGEQMQ--PSWS 439
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 87/230 (37%), Gaps = 79/230 (34%)
Query: 447 GKFLVFRSGRSGHKNLFVLDAVNGEFNG-DIRQLTDGPWIDTMPSWSPKGDLIAFSSN-- 503
G +VF S ++G K ++ D FNG +I QLT I P +SP G +AF+
Sbjct: 179 GSKIVFVSNKTGFKEIYQCD-----FNGQNIEQLTSTKSISLTPGYSPDGRYLAFTDYTT 233
Query: 504 -----------------------------RHNPDNVEAFS------LYVIKPDGSGLRRI 528
R+ + S LY+ K DG+ RR+
Sbjct: 234 GRPALHIRSLSDRKDTVLEKNGVSIDPGWRNGRELATTLSYEGDQELYLCKVDGTVSRRL 293
Query: 529 HVA---------GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQ-- 577
+ P+GS R+ V S +G +F ++ + + +++ ++
Sbjct: 294 TTSKGIDLSPTFSPDGS------RMAFVS-SRNGLPQIFIMDVSSGLTRRLTYSGRYNTQ 346
Query: 578 ----PYGD--------------LYVVKLDGSGLRRLTWNGYENGTPAWHP 609
P GD ++ + DG+GL++LT EN P+W P
Sbjct: 347 PSWSPGGDKIAYSTWEKSGEINIFTINADGTGLKKLTSGSRENEAPSWSP 396
>gi|256823065|ref|YP_003147028.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Kangiella koreensis DSM 16069]
gi|256796604|gb|ACV27260.1| Tol-Pal system beta propeller repeat protein TolB [Kangiella
koreensis DSM 16069]
Length = 454
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 107/271 (39%), Gaps = 45/271 (16%)
Query: 358 IAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD 416
+A SDG + R+ + +WSP + Y + F++ R+ + I ++
Sbjct: 207 VADSDGFNGKRIFASRSPIMSPTWSPDSSQLSYVT----FENGRSEIVIQDIA------- 255
Query: 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI 476
+ + EI K G N+ P+ SPDG +V + G+ L++L+ + +
Sbjct: 256 -SGQREIVASYK-------GFNSAPAWSPDGSKMVVVLSKDGNPELYLLELATKQ----L 303
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS 536
++LT IDT PSW+P G + F+S+R + L K D IH AG E +
Sbjct: 304 QRLTRHYAIDTEPSWAPDGKSLIFTSDRGGRPQIYRIRLADKKVDRVTFEGIHNAGAEFT 363
Query: 537 GDVDRERINHVCFSADGEWL-----LFTANLGAVMAEPVSWPNQFQPYGDLYV------- 584
D + H A+G + L T L + + P G + +
Sbjct: 364 PDGKSIVMVH---QANGSYHIAAQDLVTGQLTVLTKTTLDESLSIAPNGSMIIFSTVDGG 420
Query: 585 ------VKLDGSGLRRLTWNGYENGTPAWHP 609
V +DG RL E PAW P
Sbjct: 421 QKVLSAVSMDGRFKARLPATVGEVKAPAWSP 451
>gi|84687705|ref|ZP_01015578.1| translocation protein TolB precursor [Maritimibacter alkaliphilus
HTCC2654]
gi|84664288|gb|EAQ10779.1| translocation protein TolB precursor [Rhodobacterales bacterium
HTCC2654]
Length = 444
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 85/182 (46%), Gaps = 36/182 (19%)
Query: 436 GNNAF-PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
GN AF P SPDG L+F + G+ ++ +D +NG G + QLT+ P IDT PS+SP
Sbjct: 254 GNMAFSPRFSPDGNGLIFSLEQGGNSEIYRMD-LNG---GGLVQLTNSPAIDTAPSFSPD 309
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
G I F S+R + YV+ +G +RI GP R +S G+
Sbjct: 310 GSRIVFESDRSGTQQI-----YVMSANGGEPQRISF-GP--------GRYGTPVWSPRGD 355
Query: 555 WLLFTA-NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+ FT N G +F + V++ DGS R LT + + G P W P ++
Sbjct: 356 LIAFTKQNAG-----------RFH----IGVMRTDGSEERLLTASFLDEG-PTWAPNGRV 399
Query: 614 DL 615
+
Sbjct: 400 IM 401
>gi|148656049|ref|YP_001276254.1| WD40 domain-containing protein [Roseiflexus sp. RS-1]
gi|148568159|gb|ABQ90304.1| WD40 domain protein beta Propeller [Roseiflexus sp. RS-1]
Length = 567
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN---SWSPTEKHVIYTS 391
PS+SP G IVF N + + ++DGS L + Y+ +WSP + + +TS
Sbjct: 69 PSWSPAGDRIVFASRRASNWDLYVMRADGSDLRRLTEHPA--YDGEPAWSPDGRQIAFTS 126
Query: 392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451
Q+ + LD D++ +T + ++ P+ +PDG+ L
Sbjct: 127 M--------RDGQLDIYTLDLDSG----------DLRRITSHPSADSQ-PTWAPDGRRLA 167
Query: 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVE 511
F S R ++ +++ D V G I LT+ P D P+WSP G IAF S+R N+
Sbjct: 168 FTSWRDSNQEIYITD-VEGS---TIVNLTNHPAPDHSPAWSPDGRFIAFISDRDGGGNLH 223
Query: 512 AFSLYV-----IKPDGSGLR 526
L PD GLR
Sbjct: 224 IADLVTGEERRAGPDNLGLR 243
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 75/188 (39%), Gaps = 44/188 (23%)
Query: 423 IPCDVKILTKEETGNNAFPSCSPDG-KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD 481
+P V ++ G F + DG F +F + +G + + LT
Sbjct: 17 VPAKVHAAQQDGQGRIVFAASRGDGGAFDIFSADLAGER---------------VVNLTA 61
Query: 482 GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDR 541
P D PSWSP GD I F+S R + LYV++ DGS LRR+ P G+
Sbjct: 62 DPHPDRSPSWSPAGDRIVFASRR-----ASNWDLYVMRADGSDLRRL-TEHPAYDGE--- 112
Query: 542 ERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYE 601
+S DG + FT+ + D+Y + LD LRR+T +
Sbjct: 113 -----PAWSPDGRQIAFTSMRDGQL--------------DIYTLDLDSGDLRRITSHPSA 153
Query: 602 NGTPAWHP 609
+ P W P
Sbjct: 154 DSQPTWAP 161
Score = 39.3 bits (90), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 581 DLYVVKLDGSGLRRLTWNGYENGTPAWHP-GNQLDLGKLR 619
DLYV++ DGS LRRLT + +G PAW P G Q+ +R
Sbjct: 89 DLYVMRADGSDLRRLTEHPAYDGEPAWSPDGRQIAFTSMR 128
Score = 38.9 bits (89), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 15/152 (9%)
Query: 7 IVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERS 66
IVF + R +D++ +++ + + EH DG A DG+ IAF S R
Sbjct: 78 IVFAS--RRASNWDLYVMRADGSDLRRLTEHPAYDGEP----AWSPDGRQ--IAFTSMRD 129
Query: 67 GSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTD 126
G IY S + S P + +L F S + +I Y TD
Sbjct: 130 GQLDIYTLDLDSGDLRRITSHPSADSQPTWAPDGRRLAFTSWRDSNQEI-------YITD 182
Query: 127 LKASKFTRLTPYGVVDYSPSVSYSGKFIAVAS 158
++ S LT + D+SP+ S G+FIA S
Sbjct: 183 VEGSTIVNLTNHPAPDHSPAWSPDGRFIAFIS 214
>gi|440733538|ref|ZP_20913249.1| translocation protein TolB [Xanthomonas translucens DAR61454]
gi|440360765|gb|ELP98023.1| translocation protein TolB [Xanthomonas translucens DAR61454]
Length = 439
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 29/178 (16%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A SDG T+++ + +WSP K + Y S F+ +++ +
Sbjct: 186 LMVADSDGYNPQTIVRSAEPLLSPNWSPDGKKLAYVS----FERGNSSIYL--------- 232
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++I + L G N PS SPDG+ L RSG+ ++V+D + +
Sbjct: 233 ------QDIATGARQLVSSFRGINGAPSFSPDGRKLALALSRSGNPEIYVMDLGSKQLT- 285
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
QLT+ IDT P+W+P G+ I F+S+R + Y + G R+ G
Sbjct: 286 ---QLTNHFGIDTEPTWAPDGNSIYFTSDRGGRPQI-----YQVAATGGSANRVTFQG 335
>gi|254294750|ref|YP_003060773.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Hirschia baltica ATCC 49814]
gi|254043281|gb|ACT60076.1| Tol-Pal system beta propeller repeat protein TolB [Hirschia baltica
ATCC 49814]
Length = 454
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 89/215 (41%), Gaps = 47/215 (21%)
Query: 409 SFQLDPSDDNNREEIPCDVKILTKEETGNN----AFPSCSPDGKFLVFRSGRSGHKNLFV 464
S + ++D N + D+ + NN PS SPDGK +VF S R G L++
Sbjct: 270 SVAMSLAEDGNSDIYILDLARRQRTRLTNNLAIDTSPSYSPDGKEIVFTSDRGGSPQLYI 329
Query: 465 LDAVNGEFNGD------IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVI 518
++A + N + + ++T G + P WSP+GDLIAF+ F + VI
Sbjct: 330 MNADGSDRNCENGPRNKVCRITFGQGSYSTPVWSPRGDLIAFTKQSKG-----RFEIGVI 384
Query: 519 KPDGSGLRRIH----VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPN 574
K DG+G R + V GP +S +G ++F A P W
Sbjct: 385 KTDGTGERSLTSDYLVEGP--------------TWSPNGRVIIFFKE--ARGGRPSLWS- 427
Query: 575 QFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ L G L+R+ G + PAW P
Sbjct: 428 ----------IDLSGRNLKRVPTRG-DASDPAWSP 451
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 112/263 (42%), Gaps = 44/263 (16%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQS---ERATVQIARVSFQ 411
+ I DG+ L R + P+ + +IYT+ P ++ ER V + +
Sbjct: 188 LAIMDQDGANPENLTDGRIEVQTPRFDPSSQTIIYTALVPDARNPLLERRRVYLFDI--- 244
Query: 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPS-CSPDGKFLVFRSGRSGHKNLFVLDAVNG 470
+ R+E+ D G +F + +PDG + G+ ++++LD
Sbjct: 245 -----ETGRQEVIGDY--------GLTSFAARFAPDGNSVAMSLAEDGNSDIYILDLARR 291
Query: 471 EFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530
+ +LT+ IDT PS+SP G I F+S+R + LY++ DGS R
Sbjct: 292 QRT----RLTNNLAIDTSPSYSPDGKEIVFTSDRGG-----SPQLYIMNADGSD--RNCE 340
Query: 531 AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590
GP N VC G+ ++ + + + +++ Q + ++ V+K DG+
Sbjct: 341 NGPR----------NKVCRITFGQG-SYSTPVWSPRGDLIAFTKQSKGRFEIGVIKTDGT 389
Query: 591 GLRRLTWNGYENGTPAWHPGNQL 613
G R LT + G P W P ++
Sbjct: 390 GERSLTSDYLVEG-PTWSPNGRV 411
>gi|431805696|ref|YP_007232597.1| tolB protein precursor [Liberibacter crescens BT-1]
gi|430799671|gb|AGA64342.1| tolB protein precursor [Liberibacter crescens BT-1]
Length = 430
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 74/169 (43%), Gaps = 33/169 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ R G+ N++ +D + ++T IDT PS+SP G I F
Sbjct: 247 PRFSPDGQRIIMSLQREGNSNIYAMDLRSRV----TTRITSTDAIDTSPSYSPDGSQIVF 302
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LYV+ DGSG RI EGS + +S G ++ FT
Sbjct: 303 ESDRGGRQQ-----LYVMNADGSGQHRISFG--EGS-------YSTPVWSPKGNFIAFTK 348
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ + V+K DGSG R LT +G+ N P W P
Sbjct: 349 QSSGKFS--------------IGVMKSDGSGERILT-SGFHNEGPTWAP 382
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 10/141 (7%)
Query: 34 FHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFH 93
F+ LT G +I +F + Q I ++S PR+Y + + + E++ + P F
Sbjct: 188 FNVRMLTSGNNIVLTPRFSPNR-QEITYMSYEGQQPRVYLLQLETGQREIVGNFPGMTFS 246
Query: 94 DRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKF 153
R + + + +S + + S +Y+ DL++ TR+T +D SPS S G
Sbjct: 247 PR-FSPDGQRIIMSLQREGN------SNIYAMDLRSRVTTRITSTDAIDTSPSYSPDGSQ 299
Query: 154 IAVASYESRPWPGEFHELNTD 174
I S R + + +N D
Sbjct: 300 IVFES--DRGGRQQLYVMNAD 318
Score = 38.9 bits (89), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 32/206 (15%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN--SWSPTEKHVIYTST 392
P FSPDG I+ + E N+ I A S+ T I A S+SP +
Sbjct: 247 PRFSPDGQRIIMSLQREGNSNI-YAMDLRSRVTTRITSTDAIDTSPSYSPDGSQI----- 300
Query: 393 GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452
+F+S+R R + +D + + I G+ + P SP G F+ F
Sbjct: 301 --VFESDRG----GRQQLYVMNADGSGQHRISFG--------EGSYSTPVWSPKGNFIAF 346
Query: 453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA 512
SG F + + + +G+ R LT G + + P+W+P G + F +
Sbjct: 347 TKQSSGK---FSIGVMKSDGSGE-RILTSG-FHNEGPTWAPNGRALMFFRQNAGAGGPQL 401
Query: 513 FSLYVIKPDGSGLRRIHVAGPEGSGD 538
+S+ D +G +H++ P + D
Sbjct: 402 YSI-----DLTGYNEVHISTPSYASD 422
>gi|405383306|ref|ZP_11037075.1| tol-pal system beta propeller repeat protein TolB [Rhizobium sp.
CF142]
gi|397320269|gb|EJJ24708.1| tol-pal system beta propeller repeat protein TolB [Rhizobium sp.
CF142]
Length = 436
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 33/175 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + IDT PS+SP G+ +AF
Sbjct: 253 PRFSPDGQKVIMSLQQEGNSNIYTMDLRSRTTTRLTSTAA----IDTSPSYSPDGNRVAF 308
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGSG RI G G R + +S G+ + FT
Sbjct: 309 ESDRGGQSQI-----YVMNADGSGQTRISF----GDG-----RYSTPVWSPRGDLIAFTK 354
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDL 615
G + + V+K DGSG R LT G+ N P W P ++ +
Sbjct: 355 QSGGKFS--------------IGVMKPDGSGERILT-TGFHNEGPTWAPNGRVIM 394
>gi|209886402|ref|YP_002290259.1| translocation protein TolB [Oligotropha carboxidovorans OM5]
gi|337740061|ref|YP_004631789.1| translocation protein TolB [Oligotropha carboxidovorans OM5]
gi|386029078|ref|YP_005949853.1| translocation protein TolB [Oligotropha carboxidovorans OM4]
gi|209874598|gb|ACI94394.1| Tol-Pal system beta propeller repeat protein TolB [Oligotropha
carboxidovorans OM5]
gi|336094146|gb|AEI01972.1| translocation protein TolB [Oligotropha carboxidovorans OM4]
gi|336097725|gb|AEI05548.1| translocation protein TolB [Oligotropha carboxidovorans OM5]
Length = 449
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NL+V+D + +LTD P IDT PS++P I F
Sbjct: 268 PRFSPDGQRIIMSLQQGGNSNLYVMDLRSKS----TTRLTDTPAIDTSPSYAPDSSRICF 323
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ +G +RI +GS + +S G+++ FT
Sbjct: 324 ESDRGGKPQI-----YVMGANGGAAQRISFG--DGS-------YSTPVWSPRGDYIAFTK 369
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G A + ++K DGSG R LT +GY N P + P ++
Sbjct: 370 QGGGQFA--------------IGIMKPDGSGERILT-SGYHNEGPTFAPNGRV 407
>gi|256828400|ref|YP_003157128.1| WD40 domain-containing protein beta Propeller [Desulfomicrobium
baculatum DSM 4028]
gi|256577576|gb|ACU88712.1| WD40 domain protein beta Propeller [Desulfomicrobium baculatum DSM
4028]
Length = 439
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497
N PS SPDG +VF +G+ LF++D +G RQLT GP D P+WSP G
Sbjct: 343 NTGPSISPDGSQVVFAQMVNGNHKLFLVDLASGHE----RQLTFGPGSDEDPTWSPDGYF 398
Query: 498 IAFSSNRHNPDNV 510
IAF+SNR P +
Sbjct: 399 IAFASNRSGPSKI 411
>gi|354722597|ref|ZP_09036812.1| translocation protein TolB [Enterobacter mori LMG 25706]
Length = 430
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+WSP
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDIGSGQ----IRQVTDGRSNNTEPTWSPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + SADG+ +
Sbjct: 301 HLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSADGKTM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSAG 353
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLSNGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ GSG R G R +S D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMD-IGSGQIRQVTDG--------RSNNTEPTWSPDSQHLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|418358267|ref|ZP_12960944.1| translocation protein TolB [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|356688303|gb|EHI52863.1| translocation protein TolB [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 437
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/328 (21%), Positives = 125/328 (38%), Gaps = 61/328 (18%)
Query: 310 STIP--HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW 367
+TIP + A + ++ RL G +F + + ++I+ DG
Sbjct: 140 ATIPGAQMRQFAHRISDIVYERLTGERGAFLTRIAYVSIEQGAQFPYQLRISDYDGYNEK 199
Query: 368 TLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD 426
TL++ R + +WSP + Y S F+++++ + + ++I
Sbjct: 200 TLLRSREPLMSPAWSPDGSKLAYVS----FENQKSEIYV---------------QDIYNQ 240
Query: 427 VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID 486
+ L G N P SPDG+ L + G +++V+D + + ++T+ ID
Sbjct: 241 QRSLISSFRGINGAPKWSPDGRRLAIVLSKDGQPDIYVIDVASKQLT----RVTNTRVID 296
Query: 487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYV-----------------IKPDGSGLRRIH 529
T P+W P G + F+S R + + +L + PDG + +
Sbjct: 297 TEPAWMPDGQTLIFTSERGGKPQIYSVNLATGVTRRMTWEGESNQGASVTPDGKSM--VM 354
Query: 530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQ--------FQPYGD 581
V +G + R+ + G L+ T + A+ P PN +Q
Sbjct: 355 VTRVQGQYRIARQDMES------GAMLVLTQS--ALDESPSVAPNGSMIIYATIYQGRKS 406
Query: 582 LYVVKLDGSGLRRLTWNGYENGTPAWHP 609
L +V DG L + E PAW P
Sbjct: 407 LALVSTDGRFKAVLPTSSGEIRAPAWSP 434
>gi|381207848|ref|ZP_09914919.1| Tol-Pal system beta propeller repeat-containing protein TolB
[SAR324 cluster bacterium JCVI-SC AAA005]
Length = 420
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 10/99 (10%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N+ P SPDG +VF +G +F++D F D +QLT G + P+WSP G
Sbjct: 315 SNSDPVWSPDGTRIVFSRSVNGRNQIFLMDP----FGDDYQQLTFGRFDSEKPTWSPDGR 370
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEG 535
I F+++R F LYV+ DG+GLRR+ + P G
Sbjct: 371 QIVFAADRTG-----IFKLYVMFVDGTGLRRL-TSTPRG 403
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 35/180 (19%)
Query: 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489
LT+ + + A P+ SPD LVF S R+G + +++ D +G I +LT + ++ P
Sbjct: 265 LTRHSSIDTA-PTLSPDNHNLVFVSDRTGREQIYMRDMESGS----IYRLTFDGFSNSDP 319
Query: 490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCF 549
WSP G I FS + + + + +++ P G +++ G D E+ +
Sbjct: 320 VWSPDGTRIVFSRSVNGRNQI-----FLMDPFGDDYQQLTF------GRFDSEK---PTW 365
Query: 550 SADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN--GYENGTPAW 607
S DG ++F A+ + LYV+ +DG+GLRRLT G+E +W
Sbjct: 366 SPDGRQIVFAADRTGIFK--------------LYVMFVDGTGLRRLTSTPRGFEETGASW 411
>gi|398384073|ref|ZP_10542127.1| tol-pal system beta propeller repeat protein TolB [Sphingobium sp.
AP49]
gi|397723581|gb|EJK84074.1| tol-pal system beta propeller repeat protein TolB [Sphingobium sp.
AP49]
Length = 444
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 105/248 (42%), Gaps = 50/248 (20%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGS-------------FPSFSPDG 341
Y R GES S I ++ P + VK L ++ +G+ P FSPD
Sbjct: 164 YARLSGESPFFDSRIAYIAESGPKDNRVKRLAIMDSDGANHRFITNGQSIALTPRFSPDY 223
Query: 342 GLIVFNHDFELNAGIKIAKSD---GSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQS 398
IV+ L + ++I D G +R + F WSP ++++++ +
Sbjct: 224 KSIVYVS--YLGSRVRIYVYDIGTGKQRLVTESNNATFAPRWSPDGRNILFS------MA 275
Query: 399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG 458
I RVS Q V++ T G + S SPDG+ +VF S RSG
Sbjct: 276 VSGNTDIYRVSAQGG-----------TPVRLTTSP--GIDVGGSYSPDGRQIVFESDRSG 322
Query: 459 HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVI 518
+ ++V++A + R+++ G P WSP+GDLIAF+ + F + V+
Sbjct: 323 GQQIYVMNA----DGSNQRRISHGGGRYATPEWSPRGDLIAFTKLSGD------FKIAVM 372
Query: 519 KPDGSGLR 526
P G R
Sbjct: 373 TPSGDNER 380
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 99/260 (38%), Gaps = 56/260 (21%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ I SDG+ R+ A +SP K ++Y S + R + +
Sbjct: 194 LAIMDSDGANHRFITNGQSIALTPRFSPDYKSIVYVS----YLGSRVRIYV--------- 240
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+I + L E P SPDG+ ++F SG+ +++ + A G
Sbjct: 241 ------YDIGTGKQRLVTESNNATFAPRWSPDGRNILFSMAVSGNTDIYRVSAQGGT--- 291
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
+R LT P ID S+SP G I F S+R + YV+ DGS RRI G
Sbjct: 292 PVR-LTTSPGIDVGGSYSPDGRQIVFESDRSGGQQI-----YVMNADGSNQRRISHGG-- 343
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LR 593
R +S G+ + FT + GD + + SG
Sbjct: 344 -------GRYATPEWSPRGDLIAFT-----------------KLSGDFKIAVMTPSGDNE 379
Query: 594 RLTWNGYENGTPAWHPGNQL 613
R+ NG+++ P W P ++
Sbjct: 380 RILTNGWQDEQPTWSPNGRV 399
>gi|84516652|ref|ZP_01004011.1| translocation protein TolB precursor [Loktanella vestfoldensis
SKA53]
gi|84509688|gb|EAQ06146.1| translocation protein TolB precursor [Loktanella vestfoldensis
SKA53]
Length = 438
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 9/83 (10%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG +VF S RSG + L+++ + GD R+++ G + P WSP+GDL+AF
Sbjct: 298 PSLSPDGSQIVFESDRSGSQQLYIMSST----GGDARRISFGEGRYSTPVWSPRGDLVAF 353
Query: 501 SSNRHNPDNVEAFSLYVIKPDGS 523
+ N F + V++ DGS
Sbjct: 354 TKQ-----NAGRFHIGVMRTDGS 371
Score = 42.4 bits (98), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 91/235 (38%), Gaps = 53/235 (22%)
Query: 380 WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNA 439
+SP V+YTS F+S + + LD +D R+ G +
Sbjct: 211 FSPRGDQVLYTS----FESGFPRINL------LDVADVARRQ---------IATAPGEMS 251
Query: 440 F-PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
F P S DG+ +++ +++ D G+ +LT P IDT PS SP G I
Sbjct: 252 FSPRFSRDGRQVIYSLSNGATTDIYRTDLDTGQHV----RLTATPSIDTAPSLSPDGSQI 307
Query: 499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLF 558
F S+R LY++ G RRI EG R + +S G+ + F
Sbjct: 308 VFESDRSGSQQ-----LYIMSSTGGDARRISFG--EG-------RYSTPVWSPRGDLVAF 353
Query: 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
T Q + V++ DGS R LT + + + P W P ++
Sbjct: 354 T--------------KQNAGRFHIGVMRTDGSEERLLT-SSFLDEAPTWSPNGRV 393
>gi|359396610|ref|ZP_09189661.1| Protein tolB [Halomonas boliviensis LC1]
gi|357969288|gb|EHJ91736.1| Protein tolB [Halomonas boliviensis LC1]
Length = 428
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 24/162 (14%)
Query: 355 GIKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD 413
G+ +A +DG + L D SWSP + Y S F++ER + I
Sbjct: 178 GLYVADADGRRSEQVLTSDEPIMSPSWSPDGTKLAYVS----FETERPAIYI-------- 225
Query: 414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
+++ ++ G N P+ SPDG+ + + G ++++D N
Sbjct: 226 -------QDVATGQRVQATSFEGINGAPAWSPDGRRIAMSLSKDGQPEIYIMDVANRS-- 276
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSL 515
+ ++T+ IDT P+W+P G + F+S+R + +SL
Sbjct: 277 --LERITNNNSIDTEPAWAPDGRSLLFTSDRSGGPQLYQYSL 316
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 34/185 (18%)
Query: 428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT 487
++LT +E + PS SPDG L + S + +++ D G+ Q T I+
Sbjct: 191 QVLTSDEPIMS--PSWSPDGTKLAYVSFETERPAIYIQDVATGQRV----QATSFEGING 244
Query: 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV 547
P+WSP G IA S ++ + Y++ L RI + +D E
Sbjct: 245 APAWSPDGRRIAMSLSKDGQPEI-----YIMDVANRSLERIT-----NNNSIDTE----P 290
Query: 548 CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
++ DG LLFT++ P LY L G +RLT+ G N +
Sbjct: 291 AWAPDGRSLLFTSDRSG-------GPQ-------LYQYSLGGGEAQRLTFTGNYNARGRY 336
Query: 608 HPGNQ 612
P +
Sbjct: 337 SPAGE 341
>gi|387901441|ref|YP_006331780.1| tolB protein precursor [Burkholderia sp. KJ006]
gi|387576333|gb|AFJ85049.1| tolB protein precursor [Burkholderia sp. KJ006]
Length = 419
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 24/150 (16%)
Query: 356 IKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG + R L +WSP+ V Y S F+ ++ V I
Sbjct: 166 LQISDSDGQNARIALSSTEPIISPAWSPSGTKVAYVS----FERKKPIVYI--------- 212
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++P + + ++ GNN+ P+ SPDG L +G+ ++ ++A NG G
Sbjct: 213 ------HDLPTGRRYMVSDQKGNNSAPAWSPDGNTLAVALSLTGNTQIYTVNA-NG---G 262
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
+R+LT IDT P +SP G I F+S+R
Sbjct: 263 GLRRLTQSSSIDTEPFYSPDGHWIYFTSDR 292
Score = 38.9 bits (89), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG ++ F S R G ++ + A GE G +++T +T P SP G L+A+
Sbjct: 277 PFYSPDGHWIYFTSDRGGAPQIYRMPA-QGESAGAAQRVTFTGSYNTSPRVSPDGKLLAY 335
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S F LYV + + + +R+ F+A+G+++L+
Sbjct: 336 ISRTGG-----GFKLYV--------QDLQTGAANAITNTNRDE--SPSFAANGQYILYAT 380
Query: 561 NLG 563
G
Sbjct: 381 QSG 383
>gi|387769678|ref|ZP_10125883.1| Tol-Pal system beta propeller repeat protein TolB [Pasteurella
bettyae CCUG 2042]
gi|386906452|gb|EIJ71182.1| Tol-Pal system beta propeller repeat protein TolB [Pasteurella
bettyae CCUG 2042]
Length = 430
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 24/160 (15%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A DG ++ + + + +WSP + + Y S F+++++ + +
Sbjct: 186 VRVADYDGFNQFVVNRSSQPIMSPAWSPNGQRLAYVS----FENKKSQLVV--------- 232
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+++ + + G+N P+ SPDG L F S + G N++V+ G G
Sbjct: 233 ------QDLGSGARKVVASFPGHNGAPAFSPDGSRLAFASNKDGQLNIYVM----GSNGG 282
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFS 514
+ QLT G +T PSWSP G I F+S+R V S
Sbjct: 283 NPTQLTSGAGNNTEPSWSPDGSSILFTSDRSGSPQVYRMS 322
Score = 38.9 bits (89), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 70/185 (37%), Gaps = 38/185 (20%)
Query: 335 PSFSPDGGLIVF--NHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTS 391
P+FSPDG + F N D +LN I + S+G L SWSP +++TS
Sbjct: 253 PAFSPDGSRLAFASNKDGQLN--IYVMGSNGGNPTQLTSGAGNNTEPSWSPDGSSILFTS 310
Query: 392 TGPIFQSERATVQIARVSFQ---LDPSDDNNREEIPCDVKILTKEETGNNAF-------- 440
+ Q+ R+S P +I D K L NN
Sbjct: 311 ------DRSGSPQVYRMSASGGAASPVGGRGSAQISSDGKTLVMINGNNNVVKQDLTTGA 364
Query: 441 ------------PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTM 488
PS SP+G +++ S + G + L + +G F + TDG
Sbjct: 365 SEVLSTSFLGESPSISPNGIMIIYSSTQ-GLGKVLQLVSADGRFKARLPG-TDGQV--KF 420
Query: 489 PSWSP 493
P+WSP
Sbjct: 421 PAWSP 425
>gi|24374289|ref|NP_718332.1| TonB biopolymer transport system periplasmic component TolB
[Shewanella oneidensis MR-1]
gi|32699702|sp|Q8EDJ8.1|TOLB_SHEON RecName: Full=Protein TolB; Flags: Precursor
gi|24348827|gb|AAN55776.1| TonB biopolymer transport system periplasmic component TolB
[Shewanella oneidensis MR-1]
Length = 442
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 24/177 (13%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHV 387
+L G +F +V NH + + IA DG L++ + +WSP + +
Sbjct: 167 KLTGIRGAFLTRISYVVVNHSQKAAYSLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRRL 226
Query: 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
Y S F++++A + + +++ V+ +G N PS SPDG
Sbjct: 227 AYVS----FENKKAEIFV---------------QDLYTQVRTKVSSFSGINGAPSFSPDG 267
Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
K L + G ++V+D I+++T+ IDT PSW P G + F+S R
Sbjct: 268 KSLAVTLSKDGQPEIYVIDIATKA----IKRITNHYSIDTEPSWYPDGKSLLFTSER 320
>gi|321312767|ref|YP_004205054.1| putative acylaminoacyl-peptidase [Bacillus subtilis BSn5]
gi|320019041|gb|ADV94027.1| putative acylaminoacyl-peptidase [Bacillus subtilis BSn5]
Length = 657
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 39/181 (21%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ L F S R G + + G G+ R+LTD P+ + P WSP G+ I
Sbjct: 69 PRWSPDGRTLAFISDREGDAAQLYIMSTEG---GEARKLTDIPYGVSKPLWSPDGESILV 125
Query: 501 S----------------SNRHNPDNVEAFSLYVIKPDGSGLRR------IHVAGPEGS-G 537
+ + + P V++ S K DG GL R + V+ G
Sbjct: 126 TVSLGEGESIDDREKTEQDSYEPVEVQSLSY---KRDGKGLTRGAYAQLVLVSVKSGEMK 182
Query: 538 DVDRERINHV--CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL 595
++ + +H FS DG+WL+F+ANL + S P+ D+Y++ L+ L+++
Sbjct: 183 ELTSHKADHGDPAFSPDGKWLVFSANL--TETDDASKPH------DVYIMSLESGDLKQV 234
Query: 596 T 596
T
Sbjct: 235 T 235
Score = 38.5 bits (88), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 80/197 (40%), Gaps = 45/197 (22%)
Query: 441 PSCSPDG------KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
P +PDG K V + S N+++ + G G + T G T P WSP
Sbjct: 19 PQYAPDGTRAAYVKSQVNQEKDSYTSNIWIYETKTG---GSV-PWTHGEKRSTDPRWSPD 74
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
G +AF S+R +A LY++ +G R++ P G ++ +S DGE
Sbjct: 75 GRTLAFISDREG----DAAQLYIMSTEGGEARKL-TDIPYG--------VSKPLWSPDGE 121
Query: 555 WLLFTANLGA-----------------VMAEPVSWPNQFQ-----PYGDLYVVKLDGSGL 592
+L T +LG V + +S+ + Y L +V + +
Sbjct: 122 SILVTVSLGEGESIDDREKTEQDSYEPVEVQSLSYKRDGKGLTRGAYAQLVLVSVKSGEM 181
Query: 593 RRLTWNGYENGTPAWHP 609
+ LT + ++G PA+ P
Sbjct: 182 KELTSHKADHGDPAFSP 198
>gi|71083302|ref|YP_266021.1| translocation protein TolB [Candidatus Pelagibacter ubique
HTCC1062]
gi|91762268|ref|ZP_01264233.1| translocation protein TolB precursor [Candidatus Pelagibacter
ubique HTCC1002]
gi|118574591|sp|Q4FN21.1|TOLB_PELUB RecName: Full=Protein TolB; Flags: Precursor
gi|71062415|gb|AAZ21418.1| tolB protein [Candidatus Pelagibacter ubique HTCC1062]
gi|91718070|gb|EAS84720.1| translocation protein TolB precursor [Candidatus Pelagibacter
ubique HTCC1002]
Length = 446
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 9/88 (10%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDGK + F S RSG++ ++V+D+ NG+ ++++++ G + P WSP+GDLIAF
Sbjct: 301 PSYSPDGKKITFNSDRSGYQQIYVMDS-NGK---NVKRISFGNGLYGTPVWSPRGDLIAF 356
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
+ F + V++ DG+G R +
Sbjct: 357 TKLHKG-----KFYIGVMRTDGTGERLL 379
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 39/176 (22%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDGK ++ + G+ +++ +D N + ++T+ P IDT PS+SP G I F
Sbjct: 257 PRFSPDGKKIIMSFAKDGNSDIYTMDLENR----IVERITNHPSIDTSPSYSPDGKKITF 312
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSADGEWLLFT 559
+S+R + YV+ +G ++RI G G+ +S G+ + FT
Sbjct: 313 NSDRSGYQQI-----YVMDSNGKNVKRISFGNGLYGTP----------VWSPRGDLIAFT 357
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLY--VVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G Y V++ DG+G R LT N Y+ P+W P ++
Sbjct: 358 K----------------LHKGKFYIGVMRTDGTGERLLTENFYQEA-PSWSPNGRV 396
>gi|384085957|ref|ZP_09997132.1| tol-pal system beta propeller repeat protein TolB
[Acidithiobacillus thiooxidans ATCC 19377]
Length = 422
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 115/296 (38%), Gaps = 95/296 (32%)
Query: 356 IKIAKSDGSKRWTLIKD-RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A+SDG +++ F WSP + Y + + + RA + + ++
Sbjct: 176 LLVAESDGWNPHPIVRGIMPVFSPVWSPNNHRLAYVT----YANARAIIYVQDLA----- 226
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
R+ I +I++ P+ SP+G+ + + GH L+V + G+
Sbjct: 227 --TGKRQSIAPGGEIVSA--------PAFSPNGQEIAYARSSGGHTELYVANLQTGQR-- 274
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR------------------------------ 504
RQLT+ I+T P+WSP G I F S+R
Sbjct: 275 --RQLTNDDAINTSPTWSPNGSQIVFVSDRAGGPQIYAMNANGGNIHRLTYSGGYNAGPE 332
Query: 505 -----------HNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADG 553
H D V ++L V+ P+GSGLR + + G+ D H F+ +G
Sbjct: 333 YSPTGNAIAFIHRTDGV--YALAVMDPNGSGLRVL-----DAQGNCD-----HPSFAGNG 380
Query: 554 EWLLFTANLGA--VMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
+ +L+ + G V+AE V LDG + L + ++ PAW
Sbjct: 381 QMILYGTHRGGRKVLAE----------------VSLDGKTMAILHSDVGQDSQPAW 420
>gi|329848730|ref|ZP_08263758.1| tol-Pal system beta propeller repeat protein TolB [Asticcacaulis
biprosthecum C19]
gi|328843793|gb|EGF93362.1| tol-Pal system beta propeller repeat protein TolB [Asticcacaulis
biprosthecum C19]
Length = 449
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 75/169 (44%), Gaps = 33/169 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG L F + + +++V + +N + +LT P IDT PS+S G IAF
Sbjct: 267 PRYSPDGTKLAFSVSQGANSDIYVTN-LNTR---SLSRLTSDPAIDTSPSFSADGSRIAF 322
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+S+R + YV+ DGSG RRI G S V FS G+ + FT
Sbjct: 323 TSDRGGSPQI-----YVMGADGSGARRITFGGGLYSTPV---------FSPKGDLIAFT- 367
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
Q + + V+ DGSG R LT + E G P W P
Sbjct: 368 -------------KQSKGRFSIGVMNPDGSGERLLTSSYLEEG-PTWAP 402
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 74/189 (39%), Gaps = 38/189 (20%)
Query: 428 KILTKEETGNNAFPSCSPDGKFLVFR--SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWI 485
+ L E +G P S DG + + S S L+ L+A GE +R +
Sbjct: 210 QYLAVEGSGKIITPRFSADGTEIAYMALSADSARIFLYDLEARRGEQVAQVRGMA----- 264
Query: 486 DTMPSWSPKGDLIAFS-SNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERI 544
P +SP G +AFS S N D +YV + L R+ D
Sbjct: 265 -FAPRYSPDGTKLAFSVSQGANSD------IYVTNLNTRSLSRLTS---------DPAID 308
Query: 545 NHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGT 604
FSADG + FT++ G P +YV+ DGSG RR+T+ G T
Sbjct: 309 TSPSFSADGSRIAFTSDRGG---SP-----------QIYVMGADGSGARRITFGGGLYST 354
Query: 605 PAWHPGNQL 613
P + P L
Sbjct: 355 PVFSPKGDL 363
>gi|145636350|ref|ZP_01792019.1| translocation protein TolB precursor [Haemophilus influenzae
PittHH]
gi|145270515|gb|EDK10449.1| translocation protein TolB precursor [Haemophilus influenzae
PittHH]
Length = 427
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 46/206 (22%)
Query: 356 IKIAKSDGSKRWTLIKDRTA---FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412
+++A DG ++ I +R+A +WSP + + Y S F+++++ + +
Sbjct: 184 VRVADYDGYNQF--IVNRSAQPIMSPAWSPNGQRLAYVS----FENKKSQLVV------- 230
Query: 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
+++ + + G+N P+ SPDG L F S R G N++V+ A NG
Sbjct: 231 --------QDLNSGARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGA-NG-- 279
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
G QLT G +T P+WSP G+ I F+S+R V Y + +G V G
Sbjct: 280 -GTPTQLTSGAGNNTEPAWSPDGNSILFTSDRSGSPQV-----YRMDANGG---SATVVG 330
Query: 533 PEGSGDVDRERINHVCFSADGEWLLF 558
GS + SADG+ L+
Sbjct: 331 GRGSAQI----------SADGKTLVM 346
>gi|289661909|ref|ZP_06483490.1| translocation protein TolB [Xanthomonas campestris pv. vasculorum
NCPPB 702]
gi|289667000|ref|ZP_06488075.1| translocation protein TolB [Xanthomonas campestris pv. musacearum
NCPPB 4381]
Length = 439
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 29/178 (16%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A SDG T+++ + +WSP K + Y S F+ +++ +
Sbjct: 186 LMVADSDGYNPQTIVRSAEPLLSPNWSPDGKKLAYVS----FERGNSSIYL--------- 232
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++I + L G N PS SPDG+ L RSG+ ++V+D + +
Sbjct: 233 ------QDIATGARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLT- 285
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
QLT+ IDT P+W+P G I F+S+R + Y + G R+ G
Sbjct: 286 ---QLTNHFGIDTEPTWAPDGGSIYFTSDRGGRPQI-----YQVSASGGSANRVTFQG 335
>gi|424790617|ref|ZP_18217143.1| TolB protein [Xanthomonas translucens pv. graminis ART-Xtg29]
gi|422797919|gb|EKU26099.1| TolB protein [Xanthomonas translucens pv. graminis ART-Xtg29]
Length = 439
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 29/178 (16%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A SDG T+++ + +WSP K + Y S F+ +++ +
Sbjct: 186 LMVADSDGYNPQTIVRSAEPLLSPNWSPDGKKLAYVS----FERGNSSIYL--------- 232
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++I + L G N PS SPDG+ L RSG+ ++V+D + +
Sbjct: 233 ------QDIATGARQLVSSFRGINGAPSFSPDGRKLALALSRSGNPEIYVMDLGSKQLT- 285
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
QLT+ IDT P+W+P G I F+S+R + Y + G R+ G
Sbjct: 286 ---QLTNHFGIDTEPTWAPDGSSIYFTSDRGGRPQI-----YQVAASGGSANRVTFQG 335
>gi|418031575|ref|ZP_12670060.1| putative acylaminoacyl-peptidase [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|351472634|gb|EHA32747.1| putative acylaminoacyl-peptidase [Bacillus subtilis subsp. subtilis
str. SC-8]
Length = 659
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 39/181 (21%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ L F S R G + + G G+ R+LTD P+ + P WSP G+ I
Sbjct: 71 PRWSPDGRTLAFISDREGDAAQLYIMSTEG---GEARKLTDIPYGVSKPLWSPDGESILV 127
Query: 501 S----------------SNRHNPDNVEAFSLYVIKPDGSGLRR------IHVAGPEGS-G 537
+ + + P V++ S K DG GL R + V+ G
Sbjct: 128 TVSLGEGESIDDREKTEQDSYEPVEVQSLSY---KRDGKGLTRGAYAQLVLVSVKSGEMK 184
Query: 538 DVDRERINHV--CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL 595
++ + +H FS DG+WL+F+ANL + S P+ D+Y++ L+ L+++
Sbjct: 185 ELTSHKADHGDPAFSPDGKWLVFSANL--TETDDASKPH------DVYIMSLESGDLKQV 236
Query: 596 T 596
T
Sbjct: 237 T 237
>gi|330991878|ref|ZP_08315827.1| Protein tolB [Gluconacetobacter sp. SXCC-1]
gi|329760899|gb|EGG77394.1| Protein tolB [Gluconacetobacter sp. SXCC-1]
Length = 456
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 9/86 (10%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG +VF S R G L+++ A GD ++++ G P WSP+GDLIAF
Sbjct: 313 PSFSPDGSQIVFNSDRGGSPQLYIMSAS----GGDAKRISYGHGQYGSPVWSPRGDLIAF 368
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLR 526
S + +FSL V+ PDG+G R
Sbjct: 369 SRIANG-----SFSLGVMAPDGTGER 389
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 80/186 (43%), Gaps = 37/186 (19%)
Query: 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489
L + +G + P +PDG+ ++ R G +++++D N RQLT IDT P
Sbjct: 258 LLGDFSGISFAPRFAPDGRSVILSVTRGGGSDIYLVDLANMSR----RQLTASGAIDTSP 313
Query: 490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCF 549
S+SP G I F+S+R LY++ G +RI + V R + + F
Sbjct: 314 SFSPDGSQIVFNSDRGGSPQ-----LYIMSASGGDAKRISYGHGQYGSPVWSPRGDLIAF 368
Query: 550 S--ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
S A+G + L VMA DG+G R LT G+ +PA+
Sbjct: 369 SRIANGSFSL------GVMAP-------------------DGTGERILT-QGFTVESPAF 402
Query: 608 HPGNQL 613
P ++
Sbjct: 403 CPNGRV 408
>gi|379023121|ref|YP_005299782.1| translocation protein TolB [Rickettsia canadensis str. CA410]
gi|376324059|gb|AFB21300.1| translocation protein TolB [Rickettsia canadensis str. CA410]
Length = 444
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 127/301 (42%), Gaps = 36/301 (11%)
Query: 298 YHRFRGESTEGQSTIPHLEPVAS--PVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG 355
Y + G++ + I ++ +S +K + ++ +G+ + +G +V F +
Sbjct: 151 YEKITGDAGYFDTKIVYVSESSSLPKIKRIALMDYDGANNKYLTNGTSLVLTPRFARSVD 210
Query: 356 IKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS 415
S +KR LI Y T K I + I + R + + + +
Sbjct: 211 KIFYVSYATKRRALI------YEKDLKTGKESIVSDFAGISFAPRFSPDGRKAVMSIAKN 264
Query: 416 DDNNREEIPCDVKILTK--EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
+ EI K L K + G N PS SPDGK +V+ S R+G L+++++ +G
Sbjct: 265 GSTHIYEIDLATKQLHKLTDGFGINTSPSYSPDGKKIVYNSDRNGVPQLYIMNS-DGS-- 321
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP---DGSGLRRIHV 530
++++++ G PSWSP+GD IAF+ D + F++ ++K D RI
Sbjct: 322 -NVKRISFGGGSYAAPSWSPRGDYIAFTKITRGEDGSKTFNIGIMKAYPQDDENSERIIT 380
Query: 531 AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590
+G + C+S +G ++F WP++ + G + +D +
Sbjct: 381 SG---------YLVESPCWSPNGRVIMFAKG----------WPSRAKAPGKNKIFAIDLT 421
Query: 591 G 591
G
Sbjct: 422 G 422
>gi|317038874|ref|XP_003188680.1| hypothetical protein ANI_1_2282184 [Aspergillus niger CBS 513.88]
Length = 319
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 83/196 (42%), Gaps = 38/196 (19%)
Query: 356 IKIAKSDGSKRWTLIKDRTA--FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD 413
+ IA+ DGS L+ + F SWSP KHV +TS + I RV+
Sbjct: 55 LYIAEPDGSNAKLLLGSNSVYDFRASWSPDAKHVYFTSE----RRGDGQADIYRVAI--- 107
Query: 414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
N + +V+ + G + S SPDGK L F + R + +L +
Sbjct: 108 ----NGTSTVGAEVEPVASSP-GVDDSASISPDGKMLAFATSRYNQTSQIMLMVLE---T 159
Query: 474 GDIRQLTDGPWIDTM-----------PSWSPKGDLIAFSSNRHNP----------DNVEA 512
G ++ LT P I P+WSP G+ I F+S+R+ P ++ +
Sbjct: 160 GSLKNLTLIPGISEAANSALPNGYFKPTWSPDGEWIVFTSDRNTPWRGHSDGSGWEHTQE 219
Query: 513 FSLYVIKPDGSGLRRI 528
S+Y +P+G+ R +
Sbjct: 220 LSIYAARPNGTDFRLV 235
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 100/232 (43%), Gaps = 19/232 (8%)
Query: 425 CDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLD-AVNGE--FNGDIRQLTD 481
+ K+L + + S SPD K + F S R G + A+NG ++ +
Sbjct: 63 SNAKLLLGSNSVYDFRASWSPDAKHVYFTSERRGDGQADIYRVAINGTSTVGAEVEPVAS 122
Query: 482 GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEGSGDVD 540
P +D S SP G ++AF+++R+N L V++ GS + G E +
Sbjct: 123 SPGVDDSASISPDGKMLAFATSRYN--QTSQIMLMVLET-GSLKNLTLIPGISEAANSAL 179
Query: 541 RERINHVCFSADGEWLLFTANLGA---VMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL-T 596
+S DGEW++FT++ ++ W + + +Y + +G+ R + +
Sbjct: 180 PNGYFKPTWSPDGEWIVFTSDRNTPWRGHSDGSGWEHTQEL--SIYAARPNGTDFRLVSS 237
Query: 597 WNGYENGTPAWHP-GNQLDLGKLRLEDDIGDKLR-----GQFDEPLWISCDF 642
+ Y G+P + P G +L ++ ED +L+ G + +S DF
Sbjct: 238 RSNYTQGSPRFSPNGKRLVFYEMLTEDTYNGRLQPELLEGSYLNTSIVSIDF 289
>gi|86139146|ref|ZP_01057716.1| translocation protein TolB precursor [Roseobacter sp. MED193]
gi|85823990|gb|EAQ44195.1| translocation protein TolB precursor [Roseobacter sp. MED193]
Length = 446
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 13/138 (9%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG +VF S RSG L+V+ A GE R+++ G P WSP+GDLIAF
Sbjct: 306 PSYSPDGSQIVFESDRSGTPQLYVMPATGGE----ARRISFGKGRYGTPVWSPRGDLIAF 361
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA----GPEGSGDVDRERINHVCFSADGEWL 556
+ F + V++ DGS R + + GP S + A+G L
Sbjct: 362 TKQSKG-----RFHIGVMRLDGSEERLLTASFLDEGPSWSPNGRVIMFTRETQGANGRAL 416
Query: 557 LFTANLGAVMAEPVSWPN 574
L++ ++ +PV P+
Sbjct: 417 LYSVDILGRNLKPVRTPD 434
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 33/186 (17%)
Query: 428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT 487
++L+ ++ + P +PDG +V+ G+ +L+ +D G ++LT P I+T
Sbjct: 249 RVLSADKGIMSFAPRFAPDGNTVVYSQAEGGNTDLYTMDIATGAR----QRLTRAPSIET 304
Query: 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV 547
PS+SP G I F S+R LYV+ G RRI + R
Sbjct: 305 APSYSPDGSQIVFESDRSGTPQ-----LYVMPATGGEARRISFG---------KGRYGTP 350
Query: 548 CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
+S G+ + FT Q + + V++LDGS R LT + + G P+W
Sbjct: 351 VWSPRGDLIAFT--------------KQSKGRFHIGVMRLDGSEERLLTASFLDEG-PSW 395
Query: 608 HPGNQL 613
P ++
Sbjct: 396 SPNGRV 401
>gi|374333018|ref|YP_005083202.1| translocation protein TolB [Pseudovibrio sp. FO-BEG1]
gi|359345806|gb|AEV39180.1| translocation protein TolB [Pseudovibrio sp. FO-BEG1]
Length = 454
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 54/97 (55%), Gaps = 13/97 (13%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG+ +VF S R G + L+V+++ NG +++ GP + P WSP+GDLIAF
Sbjct: 314 PSFSPDGRQVVFESDRGGSQQLYVMNS-NGS---GAERISFGPGQYSTPVWSPRGDLIAF 369
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGP 533
+ F + VI+PDG G R + H GP
Sbjct: 370 TKVHQG-----RFMIGVIRPDGKGERILTEGYHNEGP 401
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 35/174 (20%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + + NL+++D +LT+ IDT PS+SP G + F
Sbjct: 270 PRFSPDGQKVIMSLQQGSNANLYLMDLRTRRTT----RLTNTAAIDTSPSFSPDGRQVVF 325
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT- 559
S+R LYV+ +GSG RI + S V +S G+ + FT
Sbjct: 326 ESDRGGSQQ-----LYVMNSNGSGAERISFGPGQYSTPV---------WSPRGDLIAFTK 371
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+ G M + V++ DG G R LT GY N PAW P ++
Sbjct: 372 VHQGRFM---------------IGVIRPDGKGERILT-EGYHNEGPAWSPNGRV 409
>gi|338531048|ref|YP_004664382.1| beta-propeller repeat-containing to-pal system protein TolB
[Myxococcus fulvus HW-1]
gi|337257144|gb|AEI63304.1| beta-propeller repeat-containing to-pal system protein TolB
[Myxococcus fulvus HW-1]
Length = 367
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 105/234 (44%), Gaps = 39/234 (16%)
Query: 306 TEGQSTIPHLEPVASPVKELRMLRL-NGSF-PSFSPDGGLIVFNHDFELNAGIKIAKSDG 363
EG S + L P V E+R+ R+ G F P+ SPDG + F E + I A +DG
Sbjct: 152 AEGFSDVVRLVPREG-VPEVRLTRVPQGCFEPAVSPDGKEVAFVCSREGDPEIYAANADG 210
Query: 364 S--KRWTL--IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNN 419
S +R T +DRT WSP K ++ S +R R+ F L P
Sbjct: 211 SGERRLTFFHTEDRTP---KWSPDGKWLVIVS-------DREGKD--RLYF-LRPDG--- 254
Query: 420 REEIPCDVKILTKEE-TGNNAFPSCSPDGKFLVFRSGR-SGHKNLFVLDAVNGEFNGDIR 477
D++ ++ E TG+ SPDG+ L + S G ++V+ G
Sbjct: 255 -----SDLRAVSGESFTGDEREAVWSPDGQRLAYVSRTPEGLARIWVVPVAGGAPVA--- 306
Query: 478 QLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA 531
LTDG D MP+WSP G +AF S R +V Y+++ DG+G R+ A
Sbjct: 307 -LTDGKHRDDMPAWSPDGKYLAFVSEREGDTDV-----YLMRADGTGQTRLTRA 354
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 87/193 (45%), Gaps = 37/193 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDGK + F R G ++ A N + +G+ R+LT D P WSP G +
Sbjct: 182 PAVSPDGKEVAFVCSREGDPEIY---AANADGSGE-RRLTFFHTEDRTPKWSPDGKWLVI 237
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV-------DRERINHVCFSADG 553
S+R D LY ++PDGS LR V+G +GD D +R+ +V + +G
Sbjct: 238 VSDREGKDR-----LYFLRPDGSDLR--AVSGESFTGDEREAVWSPDGQRLAYVSRTPEG 290
Query: 554 E---WLLFTANLGAVM----------------AEPVSWPNQFQPYGDLYVVKLDGSGLRR 594
W++ A V + +++ ++ + D+Y+++ DG+G R
Sbjct: 291 LARIWVVPVAGGAPVALTDGKHRDDMPAWSPDGKYLAFVSEREGDTDVYLMRADGTGQTR 350
Query: 595 LTWNGYENGTPAW 607
LT + P W
Sbjct: 351 LTRAKGADWLPRW 363
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 111/301 (36%), Gaps = 81/301 (26%)
Query: 197 TWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKR 256
+W+ D T +G+ + R+ E + + TRV P G CF PA DGK
Sbjct: 138 SWAPDGTWLVAESDAEGFSDVVRLVPREGVPEVRL----TRV-PQG--CFEPAVSPDGKE 190
Query: 257 LAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLE 316
+A R+ EIY +AN++ G R TE ++
Sbjct: 191 VAFVCSREG----DPEIY---------------AANADGSGERRLTFFHTEDRT------ 225
Query: 317 PVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI------ 370
P +SPDG +V D E + + DGS +
Sbjct: 226 ------------------PKWSPDGKWLVIVSDREGKDRLYFLRPDGSDLRAVSGESFTG 267
Query: 371 KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL 430
+R A WSP + + Y S P + V +A + +D +R+++
Sbjct: 268 DEREAV---WSPDGQRLAYVSRTPEGLARIWVVPVAG-GAPVALTDGKHRDDM------- 316
Query: 431 TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS 490
P+ SPDGK+L F S R G +++++ A + G R LT D +P
Sbjct: 317 ----------PAWSPDGKYLAFVSEREGDTDVYLMRA---DGTGQTR-LTRAKGADWLPR 362
Query: 491 W 491
W
Sbjct: 363 W 363
>gi|316932664|ref|YP_004107646.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Rhodopseudomonas palustris DX-1]
gi|315600378|gb|ADU42913.1| Tol-Pal system beta propeller repeat protein TolB [Rhodopseudomonas
palustris DX-1]
Length = 444
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NLFV+D + +LTD P IDT PS++P G I F
Sbjct: 261 PRFSPDGQKIIMSLQQGGNSNLFVMDLRSKATT----RLTDTPAIDTSPSYAPDGSRICF 316
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + Y++ G +RI +GS + +S G+++ FT
Sbjct: 317 ESDRGGRPQI-----YIMPAGGGQAQRISFG--DGS-------YSTPVWSPRGDYIAFTK 362
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G A + ++K DGSG R LT +G+ N P + P ++
Sbjct: 363 QGGGQFA--------------IGIMKPDGSGERILT-SGFHNEGPTFAPNGRV 400
>gi|254473216|ref|ZP_05086614.1| Tol-Pal system beta propeller repeat protein TolB [Pseudovibrio sp.
JE062]
gi|211957937|gb|EEA93139.1| Tol-Pal system beta propeller repeat protein TolB [Pseudovibrio sp.
JE062]
Length = 454
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 54/97 (55%), Gaps = 13/97 (13%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG+ +VF S R G + L+V+++ NG +++ GP + P WSP+GDLIAF
Sbjct: 314 PSFSPDGRQVVFESDRGGSQQLYVMNS-NGS---GAERISFGPGQYSTPVWSPRGDLIAF 369
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGP 533
+ F + VI+PDG G R + H GP
Sbjct: 370 TKVHQG-----RFMIGVIRPDGKGERILTEGYHNEGP 401
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 35/174 (20%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + + NL+++D +LT+ IDT PS+SP G + F
Sbjct: 270 PRFSPDGQKVIMSLQQGSNANLYLMDLRTRRTT----RLTNTAAIDTSPSFSPDGRQVVF 325
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT- 559
S+R LYV+ +GSG RI + S V +S G+ + FT
Sbjct: 326 ESDRGGSQQ-----LYVMNSNGSGAERISFGPGQYSTPV---------WSPRGDLIAFTK 371
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+ G M + V++ DG G R LT GY N PAW P ++
Sbjct: 372 VHQGRFM---------------IGVIRPDGKGERILT-EGYHNEGPAWSPNGRV 409
>gi|134294844|ref|YP_001118579.1| translocation protein TolB [Burkholderia vietnamiensis G4]
gi|166229977|sp|A4JBU1.1|TOLB_BURVG RecName: Full=Protein TolB; Flags: Precursor
gi|134138001|gb|ABO53744.1| TolB, N-terminal domain protein [Burkholderia vietnamiensis G4]
Length = 431
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 24/150 (16%)
Query: 356 IKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG + R L +WSP+ V Y S F+ ++ V I
Sbjct: 178 LQISDSDGQNARIALSSTEPIISPAWSPSGTKVAYVS----FERKKPIVYI--------- 224
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++P + + ++ GNN+ P+ SPDG L +G+ ++ ++A NG G
Sbjct: 225 ------HDLPTGRRYMVSDQKGNNSAPAWSPDGNTLAVALSLTGNTQIYTVNA-NG---G 274
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
+R+LT IDT P +SP G I F+S+R
Sbjct: 275 GLRRLTQSSSIDTEPFYSPDGHWIYFTSDR 304
>gi|302879781|ref|YP_003848345.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Gallionella capsiferriformans ES-2]
gi|302582570|gb|ADL56581.1| Tol-Pal system beta propeller repeat protein TolB [Gallionella
capsiferriformans ES-2]
Length = 422
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 95/221 (42%), Gaps = 50/221 (22%)
Query: 395 IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRS 454
+F + A V SF+L +D + E +I+ K+ + PS SPDG L + S
Sbjct: 157 VFSTRIAYVNRQGRSFRLIVADSDGYNE-----QIVLKQNEPIMS-PSWSPDGSHLAYVS 210
Query: 455 GRSGHKNLFV------LDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD 508
+GH +FV L V ++ G ++ P+WSP G +A R
Sbjct: 211 FETGHAAVFVQSLYTNLRKVVADYRGS----------NSAPAWSPDGRQLAVVLTRDGGS 260
Query: 509 NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAE 568
+ Y+++PDGS LRRI SG +D E FS DG LLFT++ G
Sbjct: 261 QI-----YLMRPDGSELRRISF-----SGGIDTEP----NFSPDGLSLLFTSDRGG---- 302
Query: 569 PVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+Y + ++G G +R+T+ +P + P
Sbjct: 303 ----------SAQVYRMPVEGGGAQRMTFASGSCFSPRYSP 333
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 90/203 (44%), Gaps = 38/203 (18%)
Query: 358 IAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD 416
+A SDG ++K + SWSP H+ Y S F++ A V +
Sbjct: 176 VADSDGYNEQIVLKQNEPIMSPSWSPDGSHLAYVS----FETGHAAVFV----------- 220
Query: 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI 476
+ + +++ + + G+N+ P+ SPDG+ L R G ++++ E +
Sbjct: 221 ----QSLYTNLRKVVADYRGSNSAPAWSPDGRQLAVVLTRDGGSQIYLMRPDGSE----L 272
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS 536
R+++ IDT P++SP G + F+S+R V Y + +G G +R+ A S
Sbjct: 273 RRISFSGGIDTEPNFSPDGLSLLFTSDRGGSAQV-----YRMPVEGGGAQRMTFA----S 323
Query: 537 GDVDRERINHVCFSADGEWLLFT 559
G R +S DG+ +FT
Sbjct: 324 GSCFSPR-----YSPDGKSFVFT 341
>gi|296331793|ref|ZP_06874260.1| putative acylaminoacyl-peptidase [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305675817|ref|YP_003867489.1| acylaminoacyl-peptidase [Bacillus subtilis subsp. spizizenii str.
W23]
gi|296151118|gb|EFG92000.1| putative acylaminoacyl-peptidase [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305414061|gb|ADM39180.1| putative acylaminoacyl-peptidase [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 657
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 84/180 (46%), Gaps = 37/180 (20%)
Query: 441 PSCSPDGKFLVFRSGRSGHK-NLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD--L 497
P SPDG+ L F S R G L+++ A GE R+LTD P+ + P WSP G+ L
Sbjct: 69 PRWSPDGRTLAFISDRDGDAAQLYIMSAEGGE----ARKLTDIPYGVSKPIWSPDGESVL 124
Query: 498 IAFS---------SNRHNPDNVEAFSL--YVIKPDGSGLRRIHVAG----PEGSGDVDRE 542
+ S + PD+ E + K DG GL R A SG+V ++
Sbjct: 125 VIVSLGEGESINDREKTEPDSFEPVEVQGLAYKRDGKGLTRGAYAQLVLVSVKSGEV-KQ 183
Query: 543 RINHV------CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596
NH FS DG+WL+F+ANL + +PY D+ ++ L+ L+++T
Sbjct: 184 LTNHKADHGDPAFSPDGKWLVFSANLTET-------NDASKPY-DVCMMSLESGDLKQIT 235
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 35/145 (24%)
Query: 487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINH 546
T P WSP G +AF S+R +A LY++ +G R++ P G ++
Sbjct: 67 TDPRWSPDGRTLAFISDRDG----DAAQLYIMSAEGGEARKL-TDIPYG--------VSK 113
Query: 547 VCFSADGEWLLFTANLG---AVMAEPVSWPNQFQP-------------------YGDLYV 584
+S DGE +L +LG ++ + P+ F+P Y L +
Sbjct: 114 PIWSPDGESVLVIVSLGEGESINDREKTEPDSFEPVEVQGLAYKRDGKGLTRGAYAQLVL 173
Query: 585 VKLDGSGLRRLTWNGYENGTPAWHP 609
V + +++LT + ++G PA+ P
Sbjct: 174 VSVKSGEVKQLTNHKADHGDPAFSP 198
>gi|58581291|ref|YP_200307.1| translocation protein TolB [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|58425885|gb|AAW74922.1| TolB protein [Xanthomonas oryzae pv. oryzae KACC 10331]
Length = 461
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 107/277 (38%), Gaps = 51/277 (18%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A SDG T+++ + +WSP K + Y S F+ +++ +
Sbjct: 208 LMVADSDGYNPQTIVRSAEPLLSPNWSPDGKKLAYVS----FERGNSSIYL--------- 254
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++I + L G N PS SPDG+ L RSG+ ++V+D + +
Sbjct: 255 ------QDIATGARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLT- 307
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI------ 528
QLT+ IDT P+W+P G I F+S+R + Y + G R+
Sbjct: 308 ---QLTNHFGIDTEPTWAPDGGSIYFTSDRGGRPQI-----YQVAASGGSANRVTFQGNY 359
Query: 529 -----------HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG-----AVMAEPVSW 572
+A +GSG+ R + + L +L A A V +
Sbjct: 360 NATASVSFDGKKIAVAQGSGNTYRIAMMDRSLGSPSWSTLSPGSLDESPSFAPNASMVLY 419
Query: 573 PNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ G LY V D +RL + PAW P
Sbjct: 420 AAREGGRGVLYAVSSDARVRQRLVLADGDVREPAWGP 456
>gi|390989252|ref|ZP_10259551.1| tol-Pal system beta propeller repeat protein TolB [Xanthomonas
axonopodis pv. punicae str. LMG 859]
gi|372556010|emb|CCF66526.1| tol-Pal system beta propeller repeat protein TolB [Xanthomonas
axonopodis pv. punicae str. LMG 859]
Length = 439
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 107/277 (38%), Gaps = 51/277 (18%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A SDG T+++ + +WSP K + Y S F+ +++ +
Sbjct: 186 LMVADSDGYNPQTIVRSAEPLLSPNWSPDGKKLAYVS----FERGNSSIYL--------- 232
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++I + L G N PS SPDG+ L RSG+ ++V+D + +
Sbjct: 233 ------QDIATGARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLT- 285
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI------ 528
QLT+ IDT P+W+P G I F+S+R + Y + G R+
Sbjct: 286 ---QLTNHFGIDTEPTWAPDGGSIYFTSDRGGRPQI-----YQVAASGGSANRVTFQGNY 337
Query: 529 -----------HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG-----AVMAEPVSW 572
+A +GSG+ R + + L +L A A V +
Sbjct: 338 NATASVSFDGKKIAVAQGSGNTYRIAMMDRSLGSPSWSTLSPGSLDESPSFAPNASMVLY 397
Query: 573 PNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ G LY V D +RL + PAW P
Sbjct: 398 AAREGGRGVLYAVSSDARVRQRLVLADGDVREPAWGP 434
>gi|357416653|ref|YP_004929673.1| translocation protein TolB [Pseudoxanthomonas spadix BD-a59]
gi|355334231|gb|AER55632.1| translocation protein TolB [Pseudoxanthomonas spadix BD-a59]
Length = 442
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 106/280 (37%), Gaps = 57/280 (20%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ IA SDG T+++ + SWSP + + Y S F+ +++ +
Sbjct: 186 LMIADSDGFNPQTIVRSAEPLLSPSWSPDGRRLAYVS----FERGNSSIYL--------- 232
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++I + L G N P+ SPDG+ L RSG+ ++V+D +
Sbjct: 233 ------QDITTGARELVASFRGINGAPAFSPDGRRLALTLSRSGNPEIYVMDLGSKALT- 285
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI------ 528
Q+T+ IDT P+WS G + F+S+R + Y G G R+
Sbjct: 286 ---QITNQYGIDTEPTWSADGSQLYFTSDRGGRPQI-----YKASSGGGGATRVTFEGNY 337
Query: 529 -----------HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQ 577
+A +GSG R + + W T + G++ P PN
Sbjct: 338 NATPTVSYDGKKIAVAQGSGSTYRIAMMDTSLGSP-RWT--TLSPGSLDESPSFAPNASM 394
Query: 578 PY--------GDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G LY V DG +RL + PAW P
Sbjct: 395 ILYAAREGGRGVLYAVSADGRVRQRLVLAQGDVREPAWSP 434
>gi|344171093|emb|CCA83558.1| protein tolB, component of the tol-pal system [blood disease
bacterium R229]
Length = 413
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 113/289 (39%), Gaps = 74/289 (25%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG+ + L + SWSP V Y S F+S + V +
Sbjct: 161 LQISDSDGANPQIALTSNEPIISPSWSPDGTKVAYVS----FESRKPVVYV--------- 207
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++ + + + GNN+ P+ SPDG+ + R G+ +++ VN + +G
Sbjct: 208 ------HDLVAGRRTVISNQKGNNSAPAWSPDGRRVAVALSRDGNTQIYL---VNADGSG 258
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-- 532
+R+LT IDT PS+SP G I F+S+R + + + V D +R+ G
Sbjct: 259 -LRRLTRSSAIDTEPSFSPDGRSIYFTSDRGGAPQI--YRMPVEGEDAGSAQRVTFKGSY 315
Query: 533 -------PEG---------------------SGDV----DRERINHVCFSADGEWLLFTA 560
P+G +GDV D F+A+G+++L+
Sbjct: 316 NTSPRMSPDGKLLAYISRVGGAFKLYVQDLSNGDVTGLTDTAYDESPSFAANGKFILYAT 375
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+G L V DG + L+ E PAW P
Sbjct: 376 RVGGRSV--------------LAAVSTDGRTRQILSLQAGEVREPAWGP 410
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 70/173 (40%), Gaps = 22/173 (12%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIY 389
N S P++SPDG + + N I + +DGS L + S+SP + + +
Sbjct: 224 NNSAPAWSPDGRRVAVALSRDGNTQIYLVNADGSGLRRLTRSSAIDTEPSFSPDGRSIYF 283
Query: 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF 449
TS QI R+ + + + R N P SPDGK
Sbjct: 284 TS------DRGGAPQIYRMPVEGEDAGSAQRVTFKGSY----------NTSPRMSPDGKL 327
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
L + S G L+V D NG+ G LTD + D PS++ G I +++
Sbjct: 328 LAYISRVGGAFKLYVQDLSNGDVTG----LTDTAY-DESPSFAANGKFILYAT 375
>gi|386759808|ref|YP_006233025.1| YuxL [Bacillus sp. JS]
gi|384933091|gb|AFI29769.1| YuxL [Bacillus sp. JS]
Length = 659
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 83/179 (46%), Gaps = 35/179 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ L F S R G + + G G+ R+LTD P+ + P WSP G+ I
Sbjct: 71 PRWSPDGRTLAFISDRDGDAAQLYIMSTEG---GEARKLTDIPYGVSKPLWSPDGESILV 127
Query: 501 SSN-----------RHNPDNVEAFSLYVI--KPDGSGLRRIHVAG----PEGSGDVDRER 543
+ N + D+ E ++ + K DG GL R A SG++ +E
Sbjct: 128 TVNLGEGESANDQEKLEQDSYEPVEVHGLSYKRDGKGLTRGAYAQLVLVSVKSGEM-KEL 186
Query: 544 INHV------CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596
NH FS DG+WL+F+ANL + S P+ D+Y++ L L+++T
Sbjct: 187 SNHKADHGDPAFSPDGKWLVFSANL--TETDDASKPH------DVYMMSLASGDLKQVT 237
>gi|406914733|gb|EKD53884.1| hypothetical protein ACD_60C00143G0026 [uncultured bacterium]
Length = 412
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 117/276 (42%), Gaps = 49/276 (17%)
Query: 356 IKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++++ DG + R LI + +WSP K + Y S F+++ A + +
Sbjct: 161 LEVSDVDGYNPRPLLISNDPIMSPAWSPNGKQIAYVS----FENKHAAIYV--------- 207
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
E++ + L + G N P+ SPDG+ L + G N++++D +
Sbjct: 208 ------EDVATGSRRLMSDFPGINGAPAWSPDGRKLALVLSKEGSPNIYLMDVAS----- 256
Query: 475 DIRQLT--DGPW-IDTMPSWSPKGDLIAFSSNRH-NPD----NVEAFSLYVIKPDGSGLR 526
R+LT W I+T P+WSP G I F+SNR NP N+ ++ I G+
Sbjct: 257 --RRLTPVTHDWSINTEPAWSPNGRSIIFTSNRSGNPQIYQKNLATGAISRITYQGNYNA 314
Query: 527 RIHVAGPEGS--GDVDRER--INHVCFSAD-GEWLLFTANLGAVMAEPVSWPN-QFQPYG 580
R A P+G+ ++RE N D G + + T + G P PN YG
Sbjct: 315 RASFA-PDGNHITILNRETNLFNIGILDLDTGTFRVLTNSSGTDNESPSVAPNGSMVLYG 373
Query: 581 DLY-------VVKLDGSGLRRLTWNGYENGTPAWHP 609
LY +V DGS RL E PAW P
Sbjct: 374 TLYAGRSVLAMVASDGSVQLRLPAREGEVQDPAWSP 409
>gi|430757821|ref|YP_007208278.1| peptidase YuxL [Bacillus subtilis subsp. subtilis str. BSP1]
gi|430022341|gb|AGA22947.1| putative peptidase YuxL [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 657
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 39/181 (21%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ L F S R G + + G G+ R+LTD P+ + P WSP G+ I
Sbjct: 69 PRWSPDGRTLAFISDREGDAAQLYIMSTEG---GEARKLTDIPYGVSKPIWSPDGESILV 125
Query: 501 S----------------SNRHNPDNVEAFSLYVIKPDGSGLRR------IHVAGPEGS-G 537
+ + + P V+ S K DG GL R + V+ G
Sbjct: 126 TVSLGEGENIDDREKTEQDSYEPVEVQGLSY---KRDGKGLTRGAYAQLVLVSVKSGEMK 182
Query: 538 DVDRERINHV--CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL 595
++ + +H FS DG+WL+F+ANL + S P+ D+Y++ L+ L+++
Sbjct: 183 ELTSHKADHGDPAFSPDGKWLVFSANL--TETDDASKPH------DVYIMSLESGDLKQV 234
Query: 596 T 596
T
Sbjct: 235 T 235
>gi|1685080|gb|AAC44597.1| TolB [Haemophilus influenzae]
Length = 427
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 46/206 (22%)
Query: 356 IKIAKSDGSKRWTLIKDRTA---FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412
+++A DG ++ I +R+A +WSP + + Y S F+++++ + +
Sbjct: 184 VRVADYDGYNQF--IVNRSAQPIMSPAWSPDGQRLAYVS----FENKKSQLVV------- 230
Query: 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
+++ + + G+N P+ SPDG L F S R G N++V+ A NG
Sbjct: 231 --------QDLNSGTRKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGA-NG-- 279
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
G QLT G +T P+WSP G+ I F+S+R V Y + +G + + G
Sbjct: 280 -GTPTQLTSGAGNNTEPAWSPDGNSILFTSDRSGSPQV-----YRMDANGGSVTSV---G 330
Query: 533 PEGSGDVDRERINHVCFSADGEWLLF 558
GS + SADG+ L+
Sbjct: 331 GRGSAQI----------SADGKTLVM 346
>gi|91793532|ref|YP_563183.1| WD-40-like beta propeller repeat-containing protein [Shewanella
denitrificans OS217]
gi|91715534|gb|ABE55460.1| WD40-like beta Propeller [Shewanella denitrificans OS217]
Length = 292
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 96/205 (46%), Gaps = 42/205 (20%)
Query: 333 SFPSFSPDGGLIVFNHDFE-----LNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHV 387
S P++SPDG IVF +++ A I + +DGSK+ T I+ ++P + +
Sbjct: 111 SVPAWSPDGKKIVFAREYKDPEGVFQAEIWLMNADGSKQ-TQIESLKGSNPHFTP-DGRI 168
Query: 388 IYTSTGPIFQSERATVQIARVS----FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSC 443
+++S F +++ + IA + QL DN EE P
Sbjct: 169 VFSSE---FNDKKSEISIANIDGSKVIQLT---DNEAEEW----------------HPEV 206
Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503
SPDGK + F S R G++ ++V+++ + ++LT D+ PSWSP I F+
Sbjct: 207 SPDGKHIAFMSKRDGNQEIYVMNSD----GSNQKRLTFNNVGDSFPSWSPDSSEILFT-- 260
Query: 504 RHNPDNVEAFSLYVIKPDGSGLRRI 528
H D + +Y++ DGS R+I
Sbjct: 261 -HFADT--GWDIYIMNKDGSSSRKI 282
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 116/305 (38%), Gaps = 49/305 (16%)
Query: 88 PCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSV 147
P D PV ++ + +S + S +Y TD + + P DY V
Sbjct: 20 PSHAQDDSPVLDSSHIIAVSG---------AGSKIYLTDREGQSSINI-PNVTGDY---V 66
Query: 148 SYS--GKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGW---PTWSGD- 201
++S GK IAV Y H +N+D N + + E+ W P WS D
Sbjct: 67 TWSPDGKKIAVRQYHDDGKTWSIHTMNSDGT-------NWKRLTHEKNKWDSVPAWSPDG 119
Query: 202 STIYFHRQADDG--------WWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHD 253
I F R+ D W + + + + TP G F+ + F+D
Sbjct: 120 KKIVFAREYKDPEGVFQAEIW--LMNADGSKQTQIESLKGSNPHFTPDGRIVFS-SEFND 176
Query: 254 GK-RLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTI 312
K +++A N ++ LT N ++P VS + + I + R +G I
Sbjct: 177 KKSEISIA------NIDGSKVIQLTDN-EAEEWHPEVSPDGKHIAFMSKR----DGNQEI 225
Query: 313 PHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD 372
+ S K L + SFPS+SPD I+F H + I I DGS ++
Sbjct: 226 YVMNSDGSNQKRLTFNNVGDSFPSWSPDSSEILFTHFADTGWDIYIMNKDGSSSRKILSG 285
Query: 373 RTAFY 377
R A +
Sbjct: 286 RDAMF 290
Score = 46.6 bits (109), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 32/195 (16%)
Query: 440 FPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
+ + SPDGK + R K + + +N + R + D++P+WSP G I
Sbjct: 65 YVTWSPDGKKIAVRQYHDDGK-TWSIHTMNSDGTNWKRLTHEKNKWDSVPAWSPDGKKIV 123
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-------PEG----SGDVDRERINHVC 548
F+ +P+ V ++++ DGS +I P+G S + + ++
Sbjct: 124 FAREYKDPEGVFQAEIWLMNADGSKQTQIESLKGSNPHFTPDGRIVFSSEFNDKKSEISI 183
Query: 549 FSADGEWLL-FTANLGAVMAEPVSWPNQFQPYG-------------DLYVVKLDGSGLRR 594
+ DG ++ T N E W + P G ++YV+ DGS +R
Sbjct: 184 ANIDGSKVIQLTDN------EAEEWHPEVSPDGKHIAFMSKRDGNQEIYVMNSDGSNQKR 237
Query: 595 LTWNGYENGTPAWHP 609
LT+N + P+W P
Sbjct: 238 LTFNNVGDSFPSWSP 252
>gi|317047357|ref|YP_004115005.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Pantoea sp. At-9b]
gi|316948974|gb|ADU68449.1| Tol-Pal system beta propeller repeat protein TolB [Pantoea sp.
At-9b]
Length = 431
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG + T P+W P
Sbjct: 246 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLGSGQ----IRQITDGRYNSTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS-GDVDRERINHVCFSADG 553
+A++S D A +Y I +G +RI G + DV + + V S+ G
Sbjct: 302 TLAYTS-----DQAGAPQIYKIGINGGAPQRITWEGAQNQDADVAADGKSMVMISSAG 354
Score = 42.4 bits (98), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG IRQ+ P + P++SP G +AF
Sbjct: 206 PTWSPDGSKLAYVTFESGKSALVIQTLANGA----IRQVASFPRHNGAPAFSPDGSKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I R + D + L +T+
Sbjct: 262 ALSKTG-----SLNLYVMDLGSGQIRQITDG---------RYNSTEPTWFPDSQTLAYTS 307
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +Y + ++G +R+TW G +N
Sbjct: 308 DQAGAP--------------QIYKIGINGGAPQRITWEGAQN 335
>gi|325923403|ref|ZP_08185068.1| tol-pal system beta propeller repeat protein TolB [Xanthomonas
gardneri ATCC 19865]
gi|325546118|gb|EGD17307.1| tol-pal system beta propeller repeat protein TolB [Xanthomonas
gardneri ATCC 19865]
Length = 439
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 57/280 (20%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A SDG T+++ + +WSP K + Y S F+ +++ +
Sbjct: 186 LMVADSDGYNPQTIVRSAEPLLSPNWSPDGKKLAYVS----FERGNSSIYL--------- 232
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++I + L G N PS SPDG+ L RSG+ ++V+D + +
Sbjct: 233 ------QDISTGARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLT- 285
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI------ 528
QLT+ IDT P+W+P G I F+S+R + Y + G R+
Sbjct: 286 ---QLTNHFGIDTEPTWAPDGGSIYFTSDRGGRPQI-----YQVAASGGSANRVTFQGNY 337
Query: 529 -----------HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQ 577
VA +GSG+ R + + W T + G++ P PN
Sbjct: 338 NATASVSFDGKKVAVAQGSGNTYRIAMMDRSLGSP-SW--STISPGSLDESPSFAPNASM 394
Query: 578 PY--------GDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G LY V D +RL + PAW P
Sbjct: 395 ILYAAREGGRGVLYAVSSDARVRQRLVLADGDVREPAWGP 434
>gi|86748935|ref|YP_485431.1| translocation protein TolB [Rhodopseudomonas palustris HaA2]
gi|118574594|sp|Q2IZ40.1|TOLB_RHOP2 RecName: Full=Protein TolB; Flags: Precursor
gi|86571963|gb|ABD06520.1| Twin-arginine translocation pathway signal [Rhodopseudomonas
palustris HaA2]
Length = 449
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NLFV+D + +LTD P IDT PS+SP I F
Sbjct: 266 PRFSPDGQRIIMSLQQGGNSNLFVMDLRSKSTT----RLTDTPAIDTSPSYSPDAARICF 321
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ G +RI +GS + +S G+++ FT
Sbjct: 322 ESDRGGKPQI-----YVMPASGGQAQRISFG--DGS-------YSTPVWSPRGDYIAFTK 367
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G A + ++K DGSG R LT +G+ N P + P ++
Sbjct: 368 QGGGQFA--------------IGIMKPDGSGERILT-SGFHNEGPTFAPNGRV 405
>gi|91787860|ref|YP_548812.1| translocation protein TolB [Polaromonas sp. JS666]
gi|118574592|sp|Q12C28.1|TOLB_POLSJ RecName: Full=Protein TolB; Flags: Precursor
gi|91697085|gb|ABE43914.1| TolB-like protein [Polaromonas sp. JS666]
Length = 426
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 101/282 (35%), Gaps = 67/282 (23%)
Query: 358 IAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD 416
+A SDG + L SWSP + Y S F+S + +
Sbjct: 179 VADSDGEGAQSALTSPEPIISPSWSPNGSQLAYVS----FESRKPVIYA----------- 223
Query: 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI 476
++ + L G+N+ P+ SPDGK LV R G ++ L G GD
Sbjct: 224 ----HDVATGKRRLLANFRGSNSAPAWSPDGKQLVATLSRDGGSQIYAL----GLSGGDP 275
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS 536
++LT IDT P++SP G I F S+R A +Y + P G R+ G
Sbjct: 276 KRLTQSSSIDTEPAYSPDGRYIYFVSDRGG-----APQIYRMSPGGGNPERVTFTGGYNI 330
Query: 537 GDVDRERINHVCFSADGEWLLFTANLGA-----VM------AEPVS-------------- 571
S DG WL + + +G VM A P++
Sbjct: 331 ---------SPAISPDGRWLAYVSRVGGAFKLHVMELASGTATPITDTTADESPSFAPNS 381
Query: 572 ----WPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ Q Q L LDG RL+ G + P W P
Sbjct: 382 RLIVYATQQQGREALMTTTLDGKIKARLSGAGGDIREPDWGP 423
>gi|221311165|ref|ZP_03593012.1| hypothetical protein Bsubs1_17491 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221315492|ref|ZP_03597297.1| hypothetical protein BsubsN3_17407 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221320407|ref|ZP_03601701.1| hypothetical protein BsubsJ_17370 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221324691|ref|ZP_03605985.1| hypothetical protein BsubsS_17521 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|255767740|ref|NP_391103.2| acylaminoacyl peptidase [Bacillus subtilis subsp. subtilis str.
168]
gi|402777380|ref|YP_006631324.1| acylaminoacyl-peptidase [Bacillus subtilis QB928]
gi|452913157|ref|ZP_21961785.1| dienelactone hydrolase family protein [Bacillus subtilis MB73/2]
gi|251757426|sp|P39839.3|YUXL_BACSU RecName: Full=Uncharacterized peptidase YuxL
gi|225185368|emb|CAB15213.2| putative acylaminoacyl-peptidase [Bacillus subtilis subsp. subtilis
str. 168]
gi|402482559|gb|AFQ59068.1| Putative acylaminoacyl-peptidase [Bacillus subtilis QB928]
gi|407962052|dbj|BAM55292.1| acylaminoacyl peptidase [Bacillus subtilis BEST7613]
gi|407966066|dbj|BAM59305.1| acylaminoacyl peptidase [Bacillus subtilis BEST7003]
gi|452118185|gb|EME08579.1| dienelactone hydrolase family protein [Bacillus subtilis MB73/2]
Length = 657
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 39/181 (21%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ L F S R G + + G G+ R+LTD P+ + P WSP G+ I
Sbjct: 69 PRWSPDGRTLAFISDREGDAAQLYIMSTEG---GEARKLTDIPYGVSKPLWSPDGESILV 125
Query: 501 S----------------SNRHNPDNVEAFSLYVIKPDGSGLRR------IHVAGPEGS-G 537
+ + + P V+ S K DG GL R + V+ G
Sbjct: 126 TVSLGEGESIDDREKTEQDSYEPVEVQGLSY---KRDGKGLTRGAYAQLVLVSVKSGEMK 182
Query: 538 DVDRERINHV--CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL 595
++ + +H FS DG+WL+F+ANL + S P+ D+Y++ L+ L+++
Sbjct: 183 ELTSHKADHGDPAFSPDGKWLVFSANL--TETDDASKPH------DVYIMSLESGDLKQV 234
Query: 596 T 596
T
Sbjct: 235 T 235
>gi|89068040|ref|ZP_01155457.1| translocation protein TolB precursor [Oceanicola granulosus
HTCC2516]
gi|89046279|gb|EAR52336.1| translocation protein TolB precursor [Oceanicola granulosus
HTCC2516]
Length = 446
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 39/173 (22%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG+ +VF S RSG + L+V+ GE ++++ G P WSP+GD+IAF
Sbjct: 306 PSLSPDGQRIVFESDRSGSQQLYVMPVTGGE----PQRISFGEGRYGSPVWSPRGDMIAF 361
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA----GPEGSGDVDRERINHVCFSADGEWL 556
+ + F + V++ DGS R + + GP +S +G L
Sbjct: 362 TKQ-----HAGRFHIGVMRTDGSEERLLTASFLDEGP--------------TWSPNGRVL 402
Query: 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+F+ P +Y V + G LRR+T + + P+W P
Sbjct: 403 MFSRETQGADGAPA-----------IYSVDVSGRNLRRVTTPAFAS-DPSWGP 443
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 95/235 (40%), Gaps = 53/235 (22%)
Query: 380 WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNA 439
+SPT VIYTS F A + + VS R++IP + G A
Sbjct: 219 FSPTGDRVIYTSWDSGFPRINA-IDVGTVS----------RQQIPV--------QAGEMA 259
Query: 440 F-PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
F P S DG+ +++ G+ +++ D G+ ++LT P I+T PS SP G I
Sbjct: 260 FSPRFSRDGRQVIYSLSEGGNIDIWRTDITTGQH----QRLTSAPSIETAPSLSPDGQRI 315
Query: 499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLF 558
F S+R LYV+ G +RI EG R +S G+ + F
Sbjct: 316 VFESDRSGSQQ-----LYVMPVTGGEPQRISFG--EG-------RYGSPVWSPRGDMIAF 361
Query: 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
T Q + V++ DGS R LT + + G P W P ++
Sbjct: 362 T--------------KQHAGRFHIGVMRTDGSEERLLTASFLDEG-PTWSPNGRV 401
>gi|218662997|ref|ZP_03518927.1| translocation protein TolB [Rhizobium etli IE4771]
Length = 437
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 53/98 (54%), Gaps = 15/98 (15%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR-QLTDGPWIDTMPSWSPKGDLIA 499
PS SPDG + F S R G ++V+DA + +G R DG + + P WSP+GDLIA
Sbjct: 298 PSYSPDGARVSFESDRGGKPQIYVMDA---DGSGQTRISFGDGSY--STPVWSPRGDLIA 352
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGP 533
F+ FS+ V+KPDGSG R + H GP
Sbjct: 353 FTKQSGG-----KFSIGVMKPDGSGERILTTGFHNEGP 385
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + IDT PS+SP G ++F
Sbjct: 254 PRFSPDGQKVIMSLQQEGNSNIYTMDLRSRTTTRLTSTAA----IDTSPSYSPDGARVSF 309
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGSG RI +GS + +S G+ + FT
Sbjct: 310 ESDRGGKPQI-----YVMDADGSGQTRISFG--DGS-------YSTPVWSPRGDLIAFTK 355
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT G+ N P W P ++
Sbjct: 356 QSGGKFS--------------IGVMKPDGSGERILT-TGFHNEGPTWAPNGRV 393
>gi|298292994|ref|YP_003694933.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Starkeya novella DSM 506]
gi|296929505|gb|ADH90314.1| Tol-Pal system beta propeller repeat protein TolB [Starkeya novella
DSM 506]
Length = 452
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 106/260 (40%), Gaps = 55/260 (21%)
Query: 356 IKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ I DG+ L + D +SPT + + Y S G R ++ ++ +
Sbjct: 202 LAIMDQDGANVTYLTRGDDLVLTPRFSPTSQEITYMSYG------RGEPRVYLLNIE--- 252
Query: 415 SDDNNREEIPCDVKILTKEETGNNAF-PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
N + E+ + N +F P +PDG+ ++ + N+FV+D +
Sbjct: 253 ---NGQREVVGNFP--------NMSFSPRFAPDGQRVILSLQQGADSNIFVMDLRSKATT 301
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP 533
+LTD P IDT P +SP G I F S+R + YV+ PDGS RI
Sbjct: 302 ----RLTDTPAIDTAPCYSPDGSQICFESDRGGGSQI-----YVMNPDGSNQHRISFG-- 350
Query: 534 EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR 593
EG R + +S G+ + FT Q Q + +++ DG G R
Sbjct: 351 EG-------RYSTPVWSPRGDVIAFT--------------KQAQGRFAIGLMRPDGQGER 389
Query: 594 RLTWNGYENGTPAWHPGNQL 613
LT GY N P + P ++
Sbjct: 390 ILT-EGYHNEGPTFAPNGRV 408
>gi|33603212|ref|NP_890772.1| translocation protein TolB [Bordetella bronchiseptica RB50]
gi|410421694|ref|YP_006902143.1| TolB-like translocation protein [Bordetella bronchiseptica MO149]
gi|410474321|ref|YP_006897602.1| TolB-like translocation protein [Bordetella parapertussis Bpp5]
gi|412341458|ref|YP_006970213.1| TolB-like translocation protein [Bordetella bronchiseptica 253]
gi|427816222|ref|ZP_18983286.1| putative TolB-like translocation protein [Bordetella bronchiseptica
1289]
gi|427819736|ref|ZP_18986799.1| putative TolB-like translocation protein [Bordetella bronchiseptica
D445]
gi|427825265|ref|ZP_18992327.1| putative TolB-like translocation protein [Bordetella bronchiseptica
Bbr77]
gi|67462004|sp|Q7WFN4.1|TOLB_BORBR RecName: Full=Protein TolB; Flags: Precursor
gi|33568843|emb|CAE34601.1| putative TolB-like translocation protein [Bordetella bronchiseptica
RB50]
gi|408444431|emb|CCJ51177.1| putative TolB-like translocation protein [Bordetella parapertussis
Bpp5]
gi|408448989|emb|CCJ60675.1| putative TolB-like translocation protein [Bordetella bronchiseptica
MO149]
gi|408771292|emb|CCJ56092.1| putative TolB-like translocation protein [Bordetella bronchiseptica
253]
gi|410567222|emb|CCN24793.1| putative TolB-like translocation protein [Bordetella bronchiseptica
1289]
gi|410570736|emb|CCN18933.1| putative TolB-like translocation protein [Bordetella bronchiseptica
D445]
gi|410590530|emb|CCN05621.1| putative TolB-like translocation protein [Bordetella bronchiseptica
Bbr77]
Length = 441
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 28/178 (15%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A +DG ++ R + SWSP + Y S F+S + V +
Sbjct: 191 LQVADADGQNPQVALRSREPIISPSWSPDGSRLAYVS----FESGKPVVYV--------- 237
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ +I GNN+ P+ SPDG L R G ++++ A G
Sbjct: 238 ------HTLATSARIPVANFKGNNSAPAWSPDGSQLAVALTRDGLSQIYIVSAGGGS--- 288
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
++R++T P IDT P+++P G I F+S+R + Y DG RR+ G
Sbjct: 289 NMRRITRSPGIDTEPNFTPDGRSIIFTSDRSGGPQI-----YQTGLDGGDARRLTFNG 341
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 70/176 (39%), Gaps = 45/176 (25%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVN------GEFNGDIRQLTDGPWIDTMPSWSPK 494
PS SPDG L + S SG ++V F G+ ++ P+WSP
Sbjct: 214 PSWSPDGSRLAYVSFESGKPVVYVHTLATSARIPVANFKGN----------NSAPAWSPD 263
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDG-SGLRRIHVAGPEGSGDVDRERINHVCFSADG 553
G +A + R + Y++ G S +RRI S +D E F+ DG
Sbjct: 264 GSQLAVALTRDGLSQI-----YIVSAGGGSNMRRITR-----SPGIDTE----PNFTPDG 309
Query: 554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
++FT++ P +Y LDG RRLT+NG N +P P
Sbjct: 310 RSIIFTSDRSG-------GPQ-------IYQTGLDGGDARRLTFNGGYNISPRISP 351
>gi|330814394|ref|YP_004358633.1| TolB protein [Candidatus Pelagibacter sp. IMCC9063]
gi|327487489|gb|AEA81894.1| TolB protein precursor [Candidatus Pelagibacter sp. IMCC9063]
Length = 448
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 39/176 (22%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDGK ++ + G+ +++ +D + + QLT P IDT PS+S G I F
Sbjct: 257 PRFSPDGKKIIMSFAKDGNSDIYSMDIKSRV----VEQLTSHPSIDTSPSYSSDGSQITF 312
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSADGEWLLFT 559
+S+R A +YV+K DGS +RI G G+ +S G+ + FT
Sbjct: 313 NSDRSG-----AQQIYVMKSDGSKAKRISFGQGLYGTP----------VWSPRGDLIAFT 357
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLY--VVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G Y V++ DG+G R LT N Y+ P+W P ++
Sbjct: 358 KIY----------------RGKFYIGVMRSDGTGERLLTENYYQEA-PSWSPNGRV 396
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 13/118 (11%)
Query: 415 SDDNNREEIPCDVKILTKEETGN----NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG 470
+ D N + D+K E+ + + PS S DG + F S RSG + ++V+ +
Sbjct: 271 AKDGNSDIYSMDIKSRVVEQLTSHPSIDTSPSYSSDGSQITFNSDRSGAQQIYVMKSDGS 330
Query: 471 EFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
+ ++++ G + P WSP+GDLIAF+ F + V++ DG+G R +
Sbjct: 331 K----AKRISFGQGLYGTPVWSPRGDLIAFTKIYRG-----KFYIGVMRSDGTGERLL 379
>gi|423482349|ref|ZP_17459039.1| hypothetical protein IEQ_02127 [Bacillus cereus BAG6X1-2]
gi|401143653|gb|EJQ51187.1| hypothetical protein IEQ_02127 [Bacillus cereus BAG6X1-2]
Length = 143
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 75/161 (46%), Gaps = 32/161 (19%)
Query: 449 FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD 508
++ F S R G+ ++V++A + +T+ P DT PSWSP G IAF+S R
Sbjct: 11 YINFPSIRDGNNEIYVMNADGS----NQTNITNSPGGDTQPSWSPDGQKIAFTSVRDG-- 64
Query: 509 NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAE 568
N+E +YV+ DGS +I + S D E +S DG+ + FT+N
Sbjct: 65 NLE---IYVMNADGS--NQIPLTNNPNS---DSEP----TWSPDGQKIAFTSNRDG---- 108
Query: 569 PVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
++YV+ DGS RLT N + PAW P
Sbjct: 109 ----------NNEIYVMNADGSNQSRLTINLTPDSNPAWSP 139
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 9/95 (9%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G + PS SPDG+ + F S R G+ ++V++A + LT+ P D+ P+WSP G
Sbjct: 42 GGDTQPSWSPDGQKIAFTSVRDGNLEIYVMNADGS----NQIPLTNNPNSDSEPTWSPDG 97
Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530
IAF+SNR + +YV+ DGS R+ +
Sbjct: 98 QKIAFTSNRDGNN-----EIYVMNADGSNQSRLTI 127
>gi|350631818|gb|EHA20188.1| hypothetical protein ASPNIDRAFT_130645 [Aspergillus niger ATCC
1015]
Length = 639
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 83/196 (42%), Gaps = 38/196 (19%)
Query: 356 IKIAKSDGSKRWTLIKDRTA--FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD 413
+ IA+ DGS L+ + F SWSP KHV +TS + I RV+
Sbjct: 20 LYIAEPDGSNAKLLLGSNSVYDFRASWSPDAKHVYFTSE----RRGDGQADIYRVAI--- 72
Query: 414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
N + +V+ + G + S SPDGK L F + R + +L +
Sbjct: 73 ----NGTSTVGAEVEPVALSP-GVDDSASISPDGKMLAFATSRYNQTSQIMLMVLE---T 124
Query: 474 GDIRQLTDGPWIDTM-----------PSWSPKGDLIAFSSNRHNP----------DNVEA 512
G ++ LT P I P+WSP G+ I F+S+R+ P ++ +
Sbjct: 125 GSLKNLTLIPGISEAANSALPNGYFKPTWSPDGEWIVFTSDRNTPWRGHSDGSGWEHTQE 184
Query: 513 FSLYVIKPDGSGLRRI 528
S+Y +P+G+ R +
Sbjct: 185 LSIYAARPNGTDFRLV 200
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 26/192 (13%)
Query: 427 VKILTKEETGNNAFPSCSPDGKFLVFRS--------GRSGHKNLFVLDAVNGEFNGDIRQ 478
V +L N FPS + DG +VFR+ G L ++D + + + Q
Sbjct: 465 VTLLAGNNITNYGFPSYNYDGTQVVFRTWPGTASNGTTVGTTGLAIVDLPSRQ----VTQ 520
Query: 479 LTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV-EAFSLYVIKPDGSGLRRIHVAGPEGSG 537
LT W D +P++SP G I F + R N DN+ + + ++ + PDGS L ++ P +
Sbjct: 521 LTT-EW-DNLPAFSPDGKKILF-TRRTNLDNIGDNYDIFTMNPDGSELTKLT---PSIAS 574
Query: 538 DVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW 597
D H ++ +G L TA G P+ + + QPY + +++ DGS L+
Sbjct: 575 DA------HAVWTQNGRILYSTAMFGFQQEAPL-YDDSMQPYAIIMLMEADGSNKTALSN 627
Query: 598 NGYENGTPAWHP 609
+ +E+ P + P
Sbjct: 628 SLWEDAMPMFAP 639
Score = 43.5 bits (101), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 101/232 (43%), Gaps = 19/232 (8%)
Query: 425 CDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLD-AVNGE--FNGDIRQLTD 481
+ K+L + + S SPD K + F S R G + A+NG ++ +
Sbjct: 28 SNAKLLLGSNSVYDFRASWSPDAKHVYFTSERRGDGQADIYRVAINGTSTVGAEVEPVAL 87
Query: 482 GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEGSGDVD 540
P +D S SP G ++AF+++R+N L V++ GS + G E +
Sbjct: 88 SPGVDDSASISPDGKMLAFATSRYN--QTSQIMLMVLE-TGSLKNLTLIPGISEAANSAL 144
Query: 541 RERINHVCFSADGEWLLFTANLGA---VMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW 597
+S DGEW++FT++ ++ W + + +Y + +G+ R ++
Sbjct: 145 PNGYFKPTWSPDGEWIVFTSDRNTPWRGHSDGSGWEHTQEL--SIYAARPNGTDFRLVSS 202
Query: 598 -NGYENGTPAWHP-GNQLDLGKLRLEDDIGDKLRGQFDEPLW-----ISCDF 642
+ Y G+P + P G +L ++ ED +L+ + E + +S DF
Sbjct: 203 RSNYTQGSPRFSPNGKRLVFYEMLTEDTYNGRLQPELLEGSYLNTSIVSIDF 254
>gi|67524721|ref|XP_660422.1| hypothetical protein AN2818.2 [Aspergillus nidulans FGSC A4]
gi|40743737|gb|EAA62924.1| hypothetical protein AN2818.2 [Aspergillus nidulans FGSC A4]
gi|259486257|tpe|CBF83952.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 679
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 110/245 (44%), Gaps = 36/245 (14%)
Query: 375 AFYNSWSPTEKHVIYTSTGPIFQSERATVQ-IARVSFQLDPSDDNNREEIPCDVKILTKE 433
AF SWSP + +++ G FQS +T + R + ++ + E + +
Sbjct: 457 AFQPSWSPDGEWLVF-GEGAWFQSRASTGGWLVRAT-----ANGSEYEVLTASNTSIANT 510
Query: 434 ETGNNAFPSCSPDGKFLVFR-------SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID 486
N+ FPS S DG +VFR +G +G L V+D +N +I LT+ W D
Sbjct: 511 SIMNSGFPSYSHDGSKIVFRVWGANSTNGDTGQLGLRVMD-LNTR---NITALTN-EW-D 564
Query: 487 TMPSWSPKG--DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERI 544
+P +SP G + I F+ V + + IKPDG+ L + +G +
Sbjct: 565 NLPFFSPAGFEERIVFTRKT----GVYNYDVCTIKPDGTDLEVLTSSGGNDA-------- 612
Query: 545 NHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGT 604
H +S DG ++++ + E + + FQPYG + ++ DG + LT + +E+
Sbjct: 613 -HAVWSYDGR-IMYSTGMFGFQYECALYDDTFQPYGQVMIMDADGGNKQVLTDSIWEDSM 670
Query: 605 PAWHP 609
P P
Sbjct: 671 PLLVP 675
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 23/109 (21%)
Query: 443 CSPDGKFLVFRSGRSGHK-NLFVLDAVNGE-FNGDIRQLTDGPWIDTM------PSWSPK 494
SPDG + S +G++ N+++LD G+ +N L+ +T+ PSWSP
Sbjct: 149 LSPDGTLAAYVSTENGYRANIWILDIETGKRWNVTDTPLSRRSVNETLMNGYFRPSWSPD 208
Query: 495 GDLIAFSSNRHNP---------------DNVEAFSLYVIKPDGSGLRRI 528
G IAFSS+R+ ++ + S+Y ++ DGSG R++
Sbjct: 209 GRWIAFSSDRNTEWRGHGDDTYLGISGWEHTQELSIYAVRADGSGFRQL 257
>gi|418940949|ref|ZP_13494292.1| Protein tolB [Rhizobium sp. PDO1-076]
gi|375052360|gb|EHS48766.1| Protein tolB [Rhizobium sp. PDO1-076]
Length = 435
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 75/173 (43%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + IDT PS+SP G IAF
Sbjct: 252 PRFSPDGQRVIMSLQQDGNANIYTMDLRSRTTTRLTSTAA----IDTSPSYSPDGARIAF 307
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LYV+ DGSG +RI +GS + +S G+ + FT
Sbjct: 308 ESDRGGRQQ-----LYVMNADGSGQQRISFG--DGS-------YSTPVWSPRGDLIAFTK 353
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT G+ N P W P ++
Sbjct: 354 QSGGKFS--------------IGVMKTDGSGERILT-TGFHNEGPTWAPNGRV 391
>gi|294626856|ref|ZP_06705448.1| translocation protein TolB precursor [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294665411|ref|ZP_06730699.1| translocation protein TolB precursor [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292598870|gb|EFF43015.1| translocation protein TolB precursor [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292604822|gb|EFF48185.1| translocation protein TolB precursor [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 439
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 107/277 (38%), Gaps = 51/277 (18%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A SDG T+++ + +WSP K + Y S F+ +++ +
Sbjct: 186 LMVADSDGYNPQTIVRSAEPLLSPNWSPDGKKLAYVS----FERGNSSIYL--------- 232
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++I + L G N PS SPDG+ L RSG+ ++V+D + +
Sbjct: 233 ------QDIATGARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLT- 285
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI------ 528
QLT+ IDT P+W+P G I F+S+R + Y + G R+
Sbjct: 286 ---QLTNHFGIDTEPTWAPDGGSIYFTSDRGGRPQI-----YQVAASGGSANRVTFQGNY 337
Query: 529 -----------HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG-----AVMAEPVSW 572
+A +GSG+ R + + L +L A A V +
Sbjct: 338 NATASVSFDGKKIAVAQGSGNTYRIAMMDRSLGSPSWSTLSPGSLDESPSFAPNASMVLY 397
Query: 573 PNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ G LY V D +RL + PAW P
Sbjct: 398 AAREGGRGVLYAVSSDARVRQRLVLADGDVREPAWGP 434
>gi|21243868|ref|NP_643450.1| translocation protein TolB [Xanthomonas axonopodis pv. citri str.
306]
gi|78048828|ref|YP_365003.1| translocation protein TolB [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|325929357|ref|ZP_08190487.1| tol-pal system beta propeller repeat protein TolB [Xanthomonas
perforans 91-118]
gi|346725942|ref|YP_004852611.1| translocation protein TolB [Xanthomonas axonopodis pv. citrumelo
F1]
gi|381169813|ref|ZP_09878976.1| Tol-Pal system beta propeller repeat protein TolB [Xanthomonas
citri pv. mangiferaeindicae LMG 941]
gi|418516859|ref|ZP_13083029.1| translocation protein TolB [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
gi|418521562|ref|ZP_13087605.1| translocation protein TolB [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|32699706|sp|Q8PHV7.1|TOLB_XANAC RecName: Full=Protein TolB; Flags: Precursor
gi|119371066|sp|Q3BQG0.1|TOLB_XANC5 RecName: Full=Protein TolB; Flags: Precursor
gi|21109469|gb|AAM37986.1| TolB protein [Xanthomonas axonopodis pv. citri str. 306]
gi|78037258|emb|CAJ25003.1| biopolymer transport TolB protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325540269|gb|EGD11881.1| tol-pal system beta propeller repeat protein TolB [Xanthomonas
perforans 91-118]
gi|346650689|gb|AEO43313.1| translocation protein TolB [Xanthomonas axonopodis pv. citrumelo
F1]
gi|380689831|emb|CCG35463.1| Tol-Pal system beta propeller repeat protein TolB [Xanthomonas
citri pv. mangiferaeindicae LMG 941]
gi|410702407|gb|EKQ60913.1| translocation protein TolB [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|410706456|gb|EKQ64916.1| translocation protein TolB [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
Length = 439
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 107/277 (38%), Gaps = 51/277 (18%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A SDG T+++ + +WSP K + Y S F+ +++ +
Sbjct: 186 LMVADSDGYNPQTIVRSAEPLLSPNWSPDGKKLAYVS----FERGNSSIYL--------- 232
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++I + L G N PS SPDG+ L RSG+ ++V+D + +
Sbjct: 233 ------QDIATGARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLT- 285
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI------ 528
QLT+ IDT P+W+P G I F+S+R + Y + G R+
Sbjct: 286 ---QLTNHFGIDTEPTWAPDGGSIYFTSDRGGRPQI-----YQVAASGGSANRVTFQGNY 337
Query: 529 -----------HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG-----AVMAEPVSW 572
+A +GSG+ R + + L +L A A V +
Sbjct: 338 NATASVSFDGKKIAVAQGSGNTYRIAMMDRSLGSPSWSTLSPGSLDESPSFAPNASMVLY 397
Query: 573 PNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ G LY V D +RL + PAW P
Sbjct: 398 AAREGGRGVLYAVSSDARVRQRLVLADGDVREPAWGP 434
>gi|67461877|sp|Q5H299.2|TOLB_XANOR RecName: Full=Protein TolB; Flags: Precursor
Length = 439
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 107/277 (38%), Gaps = 51/277 (18%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A SDG T+++ + +WSP K + Y S F+ +++ +
Sbjct: 186 LMVADSDGYNPQTIVRSAEPLLSPNWSPDGKKLAYVS----FERGNSSIYL--------- 232
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++I + L G N PS SPDG+ L RSG+ ++V+D + +
Sbjct: 233 ------QDIATGARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLT- 285
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI------ 528
QLT+ IDT P+W+P G I F+S+R + Y + G R+
Sbjct: 286 ---QLTNHFGIDTEPTWAPDGGSIYFTSDRGGRPQI-----YQVAASGGSANRVTFQGNY 337
Query: 529 -----------HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG-----AVMAEPVSW 572
+A +GSG+ R + + L +L A A V +
Sbjct: 338 NATASVSFDGKKIAVAQGSGNTYRIAMMDRSLGSPSWSTLSPGSLDESPSFAPNASMVLY 397
Query: 573 PNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ G LY V D +RL + PAW P
Sbjct: 398 AAREGGRGVLYAVSSDARVRQRLVLADGDVREPAWGP 434
>gi|372280292|ref|ZP_09516328.1| translocation protein TolB [Oceanicola sp. S124]
Length = 445
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 83/198 (41%), Gaps = 41/198 (20%)
Query: 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI 476
D R ++ + + PS SPDG +VF S RSG + L+++ A GE
Sbjct: 282 DIYRMDLATGQSVRLTDAASIETAPSFSPDGSRIVFESDRSGTQQLYIMPATGGE----A 337
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA----G 532
++++ G P WSP+GDL+AF+ F + V++ DGSG R + + G
Sbjct: 338 QRISFGEGRYGTPVWSPRGDLVAFTKQSKG-----RFHIGVMRTDGSGERLLTASFLDEG 392
Query: 533 PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL 592
P +S +G ++F Q LY V + G L
Sbjct: 393 P--------------SWSPNGRVIMFARET-----------QGEQGASSLYTVDITGRNL 427
Query: 593 RRL-TWNGYENGTPAWHP 609
+R+ T +G + PAW P
Sbjct: 428 KRVDTPSGASD--PAWGP 443
>gi|188577428|ref|YP_001914357.1| translocation protein TolB [Xanthomonas oryzae pv. oryzae PXO99A]
gi|226705899|sp|B2STJ5.1|TOLB_XANOP RecName: Full=Protein TolB; Flags: Precursor
gi|188521880|gb|ACD59825.1| Tol-Pal system beta propeller repeat protein TolB [Xanthomonas
oryzae pv. oryzae PXO99A]
Length = 439
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 107/277 (38%), Gaps = 51/277 (18%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A SDG T+++ + +WSP K + Y S F+ +++ +
Sbjct: 186 LMVADSDGYNPQTIVRSAEPLLSPNWSPDGKKLAYVS----FERGNSSIYL--------- 232
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++I + L G N PS SPDG+ L RSG+ ++V+D + +
Sbjct: 233 ------QDIATGARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLT- 285
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI------ 528
QLT+ IDT P+W+P G I F+S+R + Y + G R+
Sbjct: 286 ---QLTNHFGIDTEPTWAPDGGSIYFTSDRGGRPQI-----YQVAASGGSANRVTFQGNY 337
Query: 529 -----------HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG-----AVMAEPVSW 572
+A +GSG+ R + + L +L A A V +
Sbjct: 338 NATASVSFDGKKIAVAQGSGNTYRIAMMDRSLGSPSWSTLSPGSLDESPSFAPNASMVLY 397
Query: 573 PNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ G LY V D +RL + PAW P
Sbjct: 398 AAREGGRGVLYAVSSDARVRQRLVLADGDVREPAWGP 434
>gi|23015569|ref|ZP_00055341.1| COG0823: Periplasmic component of the Tol biopolymer transport
system [Magnetospirillum magnetotacticum MS-1]
Length = 444
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 74/173 (42%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG ++F SG+ ++ ++ + + RQLT P IDT PS+SP G I F
Sbjct: 256 PRFSPDGNKVIFSMAESGNTEIYEMNLLTRQ----KRQLTYNPAIDTAPSYSPDGQQIVF 311
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LYV+ DG RI G G R +S G+ + FT
Sbjct: 312 ESDRGGGQQ-----LYVMGADGGNATRISF----GDG-----RYATPVWSPRGDLIAFTK 357
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + V++ DGSG RL G+ P W P ++
Sbjct: 358 QKGG----------QFF----IGVMRTDGSG-ERLLAEGFLVEGPTWAPNGRV 395
>gi|33594232|ref|NP_881876.1| translocation protein TolB [Bordetella pertussis Tohama I]
gi|384205532|ref|YP_005591271.1| translocation protein TolB [Bordetella pertussis CS]
gi|408417336|ref|YP_006628043.1| TolB-like translocation protein [Bordetella pertussis 18323]
gi|67462002|sp|Q7VU03.1|TOLB_BORPE RecName: Full=Protein TolB; Flags: Precursor
gi|33564307|emb|CAE43608.1| putative TolB-like translocation protein [Bordetella pertussis
Tohama I]
gi|332383646|gb|AEE68493.1| translocation protein TolB [Bordetella pertussis CS]
gi|401779506|emb|CCJ65034.1| putative TolB-like translocation protein [Bordetella pertussis
18323]
Length = 438
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 28/178 (15%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A +DG ++ R + SWSP + Y S F+S + V +
Sbjct: 188 LQVADADGQNPQVALRSREPIISPSWSPDGSRLAYVS----FESGKPVVYV--------- 234
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ +I GNN+ P+ SPDG L R G ++++ A G
Sbjct: 235 ------HTLATSARIPVANFKGNNSAPAWSPDGSQLAVALTRDGLSQIYIVSAGGGS--- 285
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
++R++T P IDT P+++P G I F+S+R + Y DG RR+ G
Sbjct: 286 NMRRITRSPGIDTEPNFTPDGRSIIFTSDRSGGPQI-----YQTGLDGGDARRLTFNG 338
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 70/176 (39%), Gaps = 45/176 (25%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVN------GEFNGDIRQLTDGPWIDTMPSWSPK 494
PS SPDG L + S SG ++V F G+ ++ P+WSP
Sbjct: 211 PSWSPDGSRLAYVSFESGKPVVYVHTLATSARIPVANFKGN----------NSAPAWSPD 260
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDG-SGLRRIHVAGPEGSGDVDRERINHVCFSADG 553
G +A + R + Y++ G S +RRI S +D E F+ DG
Sbjct: 261 GSQLAVALTRDGLSQI-----YIVSAGGGSNMRRITR-----SPGIDTE----PNFTPDG 306
Query: 554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
++FT++ P +Y LDG RRLT+NG N +P P
Sbjct: 307 RSIIFTSDRSG-------GPQ-------IYQTGLDGGDARRLTFNGGYNISPRISP 348
>gi|33598302|ref|NP_885945.1| translocation protein TolB [Bordetella parapertussis 12822]
gi|67462003|sp|Q7W476.1|TOLB_BORPA RecName: Full=Protein TolB; Flags: Precursor
gi|33566860|emb|CAE39075.1| putative TolB-like translocation protein [Bordetella parapertussis]
Length = 441
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 28/178 (15%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A +DG ++ R + SWSP + Y S F+S + V +
Sbjct: 191 LQVADADGQNPQVALRSREPIISPSWSPDGSRLAYVS----FESGKPVVYV--------- 237
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ +I GNN+ P+ SPDG L R G ++++ A G
Sbjct: 238 ------HTLATSARIPVANFKGNNSAPAWSPDGSQLAVALTRDGLSQIYIVSAGGGS--- 288
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
++R++T P IDT P+++P G I F+S+R + Y DG RR+ G
Sbjct: 289 NMRRITRSPGIDTEPNFTPDGRSIIFTSDRSGGPQI-----YQTGLDGGDARRLTFNG 341
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 70/176 (39%), Gaps = 45/176 (25%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVN------GEFNGDIRQLTDGPWIDTMPSWSPK 494
PS SPDG L + S SG ++V F G+ ++ P+WSP
Sbjct: 214 PSWSPDGSRLAYVSFESGKPVVYVHTLATSARIPVANFKGN----------NSAPAWSPD 263
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDG-SGLRRIHVAGPEGSGDVDRERINHVCFSADG 553
G +A + R + Y++ G S +RRI S +D E F+ DG
Sbjct: 264 GSQLAVALTRDGLSQI-----YIVSAGGGSNMRRITR-----SPGIDTE----PNFTPDG 309
Query: 554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
++FT++ P +Y LDG RRLT+NG N +P P
Sbjct: 310 RSIIFTSDRSG-------GPQ-------IYQTGLDGGDARRLTFNGGYNISPRISP 351
>gi|319647634|ref|ZP_08001852.1| YuxL protein [Bacillus sp. BT1B_CT2]
gi|317389975|gb|EFV70784.1| YuxL protein [Bacillus sp. BT1B_CT2]
Length = 653
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 75/187 (40%), Gaps = 46/187 (24%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G N P SPDGK L F S R ++V+ A GE R++TD P+ + P WSP G
Sbjct: 64 GRNQHPRWSPDGKNLAFTSNREETAQIYVISAAGGE----ARKVTDIPYDVSQPEWSPDG 119
Query: 496 DLIAFSSN----------------RHNPDNVEAFSLYVIKPDGSGLRR----------IH 529
+ S H P V++ S K DG G +R +
Sbjct: 120 KTLLCSVKLTKEESVDDEKKTEIEDHEPLEVDSLSY---KADGQGFKRGKYTQLVLVQVE 176
Query: 530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589
+ D++R+ +H FS G+ + F AN + D+Y++ L
Sbjct: 177 TGEMKQLTDLERDHFSH-AFSPCGDQIAFCANQTDMRV------------NDVYLMNLST 223
Query: 590 SGLRRLT 596
L+RLT
Sbjct: 224 GDLKRLT 230
>gi|90408530|ref|ZP_01216687.1| TolB protein [Psychromonas sp. CNPT3]
gi|90310349|gb|EAS38477.1| TolB protein [Psychromonas sp. CNPT3]
Length = 437
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 118/307 (38%), Gaps = 59/307 (19%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHV 387
+L G +F I +H ++IA DG +++ + + +WSP + +
Sbjct: 161 KLTGERGAFLTRIAYIAVDHRSSHPYQLRIADYDGYAEKLILRSKQPIMSPAWSPDGRKL 220
Query: 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
+Y S F+ +++ + I + Q RE + +I N PS SPDG
Sbjct: 221 VYVS----FEKKKSQIYIQDIYTQ-------KRELMTSFPRI--------NGAPSWSPDG 261
Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP 507
K L F + G ++ ++ ++ ++++T IDT PSWSP G + F+S R
Sbjct: 262 KMLSFVLSKDGQAEIYTMNVMSKA----LKRITQNRVIDTEPSWSPDGKSLLFTSERGGR 317
Query: 508 DNVEAFSLY-----------------VIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS 550
+ L I PDG L + V+ G + + I
Sbjct: 318 PQIYQVDLSSMQTKRMTWEGDMNLGGTITPDGDSL--VLVSRSNGQYKISVQDI------ 369
Query: 551 ADGEWLLFTANLGAVMAEPVSWPN--------QFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
A GE L T + P PN +Q + L +V +DG + +
Sbjct: 370 ASGE--LRTLTKTQLDESPSVAPNGSMIIYSTVYQGHKGLALVSMDGRFKANIPAINGDV 427
Query: 603 GTPAWHP 609
+PAW P
Sbjct: 428 KSPAWSP 434
>gi|157803974|ref|YP_001492523.1| translocation protein TolB [Rickettsia canadensis str. McKiel]
gi|166229988|sp|A8EZF5.1|TOLB_RICCK RecName: Full=Protein TolB; Flags: Precursor
gi|157785237|gb|ABV73738.1| hypothetical protein A1E_04055 [Rickettsia canadensis str. McKiel]
Length = 444
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 127/301 (42%), Gaps = 36/301 (11%)
Query: 298 YHRFRGESTEGQSTIPHLEPVAS--PVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG 355
Y + G++ + I ++ +S +K + ++ +G+ + +G +V F +
Sbjct: 151 YEKITGDAGYFDTKIVYVSESSSLPKIKRIALMDYDGANNKYLTNGTSLVLTPRFARSVD 210
Query: 356 IKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS 415
S +KR LI Y T K I + I + R + + + +
Sbjct: 211 KIFYVSYATKRRALI------YEKDLKTGKESIVSDFAGISFAPRFSPDGRKAVMSIAKN 264
Query: 416 DDNNREEIPCDVKILTK--EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
+ EI K L K + G N PS SPDGK +V+ S R+G L+++++ +G
Sbjct: 265 GSTHIYEIDLATKQLHKLTDGFGINTSPSYSPDGKKIVYNSDRNGVPQLYIMNS-DGS-- 321
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP---DGSGLRRIHV 530
++++++ G PSWSP+GD IAF+ D + F++ ++K D RI
Sbjct: 322 -NVKRISFGGGSYAAPSWSPRGDYIAFTKITRGEDGSKTFNIGIMKAYPQDDENSERIIT 380
Query: 531 AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590
+G + C+S +G ++F WP++ + G + +D +
Sbjct: 381 SG---------YLVESPCWSPNGRVIMFAK----------GWPSRAKVPGKNKIFAIDLT 421
Query: 591 G 591
G
Sbjct: 422 G 422
>gi|86135211|ref|ZP_01053793.1| putative TolB protein [Polaribacter sp. MED152]
gi|85822074|gb|EAQ43221.1| putative TolB protein [Polaribacter sp. MED152]
Length = 365
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 100/233 (42%), Gaps = 42/233 (18%)
Query: 382 PTEKHVIYTSTGPIFQSERATVQIARVSFQLDP---SDDNNREEIPCDVKILTKEETGNN 438
P KH+IY ST + E V + + + P S D ++ ++ E G +
Sbjct: 116 PDNKHIIYAST-HLVDEECPEVPLRKNGKYIWPVYDSFDIFVADLEGNIVKQLTNEVGYD 174
Query: 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
A P+ SP G +VF S RSG L+ ++ ++G D++Q+TD D +SP G I
Sbjct: 175 AEPTVSPKGDKIVFTSTRSGDLELYTMN-IDGT---DVKQITDELGYDGGAFFSPDGTKI 230
Query: 499 AFSSNR-HNPDNVEAF--------------SLYVIKPDGSGLRRIHVAGPEGSGDVDRER 543
F S+R + ++A+ LY+ DGS LR++ G
Sbjct: 231 IFRSSRPKTEEEIKAYKDLLAEGLVEPTEMELYICNADGSDLRQLTDLGNANWSPF---- 286
Query: 544 INHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596
F G+ +LF++N A P +LY++ +DG L R+T
Sbjct: 287 -----FHPSGKKILFSSNFEAERGFPF----------NLYLIDIDGKNLERVT 324
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 30/148 (20%)
Query: 476 IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI-HVAGPE 534
++QLT+ D P+ SPKGD I F+S R LY + DG+ +++I G +
Sbjct: 164 VKQLTNEVGYDAEPTVSPKGDKIVFTSTRSGD-----LELYTMNIDGTDVKQITDELGYD 218
Query: 535 GSGDVDRERINHVCFSADGEWLLFTAN----------LGAVMAEPVSWPNQFQPYGDLYV 584
G FS DG ++F ++ ++AE + P + + LY+
Sbjct: 219 GGA----------FFSPDGTKIIFRSSRPKTEEEIKAYKDLLAEGLVEPTEME----LYI 264
Query: 585 VKLDGSGLRRLTWNGYENGTPAWHPGNQ 612
DGS LR+LT G N +P +HP +
Sbjct: 265 CNADGSDLRQLTDLGNANWSPFFHPSGK 292
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 26/186 (13%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGS--KRWT--LIKDRTAFYNSWSPTEKHVIYT 390
P+ SP G IVF + + DG+ K+ T L D AF+ SP +I+
Sbjct: 177 PTVSPKGDKIVFTSTRSGDLELYTMNIDGTDVKQITDELGYDGGAFF---SPDGTKIIFR 233
Query: 391 STGPIFQSERATVQIARVSFQLDPSDDNNREEIPC-----DVKILTKEETGN-NAFPSCS 444
S+ P + E + ++P++ E C D++ LT + GN N P
Sbjct: 234 SSRPKTEEEIKAYKDLLAEGLVEPTE---MELYICNADGSDLRQLT--DLGNANWSPFFH 288
Query: 445 PDGKFLVFRSGRSGHK----NLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P GK ++F S + NL+++D ++G+ ++ ++T G D P +S G +AF
Sbjct: 289 PSGKKILFSSNFEAERGFPFNLYLID-IDGK---NLERVTHGETFDAFPVFSNDGKKLAF 344
Query: 501 SSNRHN 506
SSNR+N
Sbjct: 345 SSNRNN 350
>gi|226225576|ref|YP_002759682.1| hypothetical protein GAU_0170 [Gemmatimonas aurantiaca T-27]
gi|226088767|dbj|BAH37212.1| hypothetical protein GAU_0170 [Gemmatimonas aurantiaca T-27]
Length = 380
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 38/181 (20%)
Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503
SPDGK +VF S + G +++ ++ V+G D+++LT P D P WSP G I + +
Sbjct: 195 SPDGKRIVFTSLKDGDLDIYTMN-VDGT---DVKRLTTTPGYDGGPWWSPDGTKIVYRAW 250
Query: 504 RHNPD-NVEAFS--------------LYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVC 548
++ D +++A+ L+V+ DGS R+I G G
Sbjct: 251 HYDNDTDLKAYQELLKQNMIRPNKMELFVMNADGSDQRQITKLGGANFGP---------S 301
Query: 549 FSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWH 608
++ DG+ ++F++N P S F DLY+V LDG+ L ++T NG +G P +
Sbjct: 302 WTPDGQRVIFSSN----HKNPRS--RNF----DLYIVGLDGNNLEQVTTNGEFDGFPMFS 351
Query: 609 P 609
P
Sbjct: 352 P 352
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 68/160 (42%), Gaps = 35/160 (21%)
Query: 426 DVKILTKEETGNNAFPSCSPDGKFLVFRSG--------------------RSGHKNLFVL 465
DVK LT G + P SPDG +V+R+ R LFV+
Sbjct: 222 DVKRLTTTP-GYDGGPWWSPDGTKIVYRAWHYDNDTDLKAYQELLKQNMIRPNKMELFVM 280
Query: 466 DAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL 525
+A D RQ+T + PSW+P G + FSSN NP + F LY++ DG+ L
Sbjct: 281 NADGS----DQRQITKLGGANFGPSWTPDGQRVIFSSNHKNPRS-RNFDLYIVGLDGNNL 335
Query: 526 RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV 565
++ G E FS DG L++ +N GA
Sbjct: 336 EQVTTNG---------EFDGFPMFSPDGTKLIWASNRGAA 366
Score = 45.4 bits (106), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 112/290 (38%), Gaps = 44/290 (15%)
Query: 48 NAQFVDGQD-QTIAFISERSGSP--RIYQTR---PGSSKTELLPSIPCSLFHDRPVARNN 101
NA+ QD Q + F S R G + Y R G +K + C F + N
Sbjct: 81 NAEAYFSQDGQWLTFQSTRDGRACDQQYVMRVDGTGLTKVSVGGKTTCGWF----LPGGN 136
Query: 102 KLFFISAHE-------QPD-QIFKSWSA----LYSTDLKASKFTRLTPYGVVDYSPSVSY 149
KLFF S H +PD W +Y+ D TRLT YGV +S
Sbjct: 137 KLFFASTHAADSACPPRPDPSKGYVWGIDKYDIYTADRDGQNLTRLTNYGVYTAEGVLSP 196
Query: 150 SGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHR- 208
GK I S + + + +N D +D + G P WS D T +R
Sbjct: 197 DGKRIVFTSLKDGDL--DIYTMNVD-----GTDVKRLTTTPGYDGGPWWSPDGTKIVYRA 249
Query: 209 -QADD-----GWWSIFRVSF--PENLEFLGFPIAPT---RVTPPGVHCFTPAAFHDGKRL 257
D+ + + + + P +E + ++T G F P+ DG+R+
Sbjct: 250 WHYDNDTDLKAYQELLKQNMIRPNKMELFVMNADGSDQRQITKLGGANFGPSWTPDGQRV 309
Query: 258 AVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTE 307
++ KN R+ ++Y + L+ N V+ N EF G+ F + T+
Sbjct: 310 IFSSNHKNPRSRNFDLYIVGLDGNNLEQ---VTTNGEFDGFPMFSPDGTK 356
>gi|115376904|ref|ZP_01464125.1| protein TolB [Stigmatella aurantiaca DW4/3-1]
gi|310825361|ref|YP_003957719.1| tol-pal system beta propeller repeat protein [Stigmatella
aurantiaca DW4/3-1]
gi|115366083|gb|EAU65097.1| protein TolB [Stigmatella aurantiaca DW4/3-1]
gi|309398433|gb|ADO75892.1| Tol-pal system beta propeller repeat protein [Stigmatella
aurantiaca DW4/3-1]
Length = 349
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 122/318 (38%), Gaps = 65/318 (20%)
Query: 241 PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL-----------------TLNPNFH 283
PG F A DGK L V R F H+E L T NP++
Sbjct: 64 PGEDDFPAAPSPDGKALLVIAARMVNGF-HLEQMRLQPLDGGEPVALHPPRARTRNPSWS 122
Query: 284 HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSF-PSFSPDGG 342
++ A S+ + S + LEP A ++ G F P+ SPDG
Sbjct: 123 PDGRWLVAESDARSF-----------SDLVRLEPKAGTQEQPLTQVKEGCFEPAVSPDGR 171
Query: 343 LIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNS-----WSPTEKHVIYTSTGPIFQ 397
+ F E + I + K+DG+ + TAF+ WSP + + + S
Sbjct: 172 EVAFVSSREGDPEIYVMKADGTDERRI----TAFHQEDREPRWSPDGQWLSFISN----- 222
Query: 398 SERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRS 457
+ R + L D + + + L + E + SPD K +VF
Sbjct: 223 ------REGRERYFLVRPDGTSLRAVSGEATKLDEREL------AWSPDSKKVVFVERLP 270
Query: 458 GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYV 517
K+ + AV+G G LTDG D P+WSP G + F + R L++
Sbjct: 271 EAKSRLWVAAVDG---GAPVALTDGRSRDDAPAWSPDGKYLVFVAERQG-----DVDLWL 322
Query: 518 IKPDGSGLRRIHVA-GPE 534
++ DGSG R+ A GP+
Sbjct: 323 MRADGSGQTRLTTAKGPD 340
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 29/169 (17%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG+ + F S R G ++V+ A D R++T D P WSP G ++F
Sbjct: 164 PAVSPDGREVAFVSSREGDPEIYVMKA----DGTDERRITAFHQEDREPRWSPDGQWLSF 219
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
SNR + ++++PDG+ LR + SG+ + + +S D + ++F
Sbjct: 220 ISNREGRER-----YFLVRPDGTSLRAV-------SGEATKLDERELAWSPDSKKVVFVE 267
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
L + L+V +DG LT + PAW P
Sbjct: 268 RLPEAKSR-------------LWVAAVDGGAPVALTDGRSRDDAPAWSP 303
Score = 42.4 bits (98), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 101/266 (37%), Gaps = 35/266 (13%)
Query: 235 PTRVTPPGVHCFTPAAFHDGKRL-AVATRRKNRNFRHIEIYDLTLNPNFHH-----YNPF 288
P + PP P+ DG+ L A + R + +E T + P
Sbjct: 106 PVALHPPRARTRNPSWSPDGRWLVAESDARSFSDLVRLEPKAGTQEQPLTQVKEGCFEPA 165
Query: 289 VSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH 348
VS + + + S EG I ++ + + + P +SPDG + F
Sbjct: 166 VSPDGREVAFV----SSREGDPEIYVMKADGTDERRITAFHQEDREPRWSPDGQWLSFIS 221
Query: 349 DFELNAGIKIAKSDGSKRWTLIKDRTAFYN---SWSPTEKHVIYTSTGPIFQSERATVQI 405
+ E + + DG+ + + T +WSP K V++ P +S R V
Sbjct: 222 NREGRERYFLVRPDGTSLRAVSGEATKLDERELAWSPDSKKVVFVERLPEAKS-RLWVAA 280
Query: 406 ARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVL 465
+ +D +R++ P + SPDGK+LVF + R G +L+++
Sbjct: 281 VDGGAPVALTDGRSRDDAP-----------------AWSPDGKYLVFVAERQGDVDLWLM 323
Query: 466 DAVNGEFNGDIRQLTDGPWIDTMPSW 491
A + +G R LT D +P W
Sbjct: 324 RA---DGSGQTR-LTTAKGPDWLPRW 345
>gi|440636699|gb|ELR06618.1| hypothetical protein GMDG_08091 [Geomyces destructans 20631-21]
Length = 212
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 93/226 (41%), Gaps = 49/226 (21%)
Query: 375 AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE 434
AF +WSP + + ++ FQ + I R + ++ + E++ + +
Sbjct: 29 AFQPTWSPGGEWIAVSAGSWFFQRAFSGGWIYRAA-----ANGSYSEQLTFGIA-----D 78
Query: 435 TGNNAFPSCSPDGKFLVFRS-GRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
N+ FPS SPDG LV+R G G L +L+ + LTD W D+ P WSP
Sbjct: 79 EVNSGFPSFSPDGTQLVYRDFGSEGGLGLRILNLADKT----TANLTD-DW-DSNPGWSP 132
Query: 494 KGDLIAFSSNRHNPDNVEA---FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS 550
G+ + N N +++EA F +Y I PDG+ H G G
Sbjct: 133 DGERVFTRRNHINWEDLEAIDSFDIYTIAPDGTPHATHHECGMYG--------------- 177
Query: 551 ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596
E V++ N FQPYG + V+ DGS +T
Sbjct: 178 --------------FREECVNYDNTFQPYGQIVVMNADGSNKTMVT 209
>gi|326316638|ref|YP_004234310.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Acidovorax avenae subsp. avenae ATCC 19860]
gi|323373474|gb|ADX45743.1| Tol-Pal system beta propeller repeat protein TolB [Acidovorax
avenae subsp. avenae ATCC 19860]
Length = 439
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 105/272 (38%), Gaps = 44/272 (16%)
Query: 298 YHRFRGESTEGQS---TIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA 354
++ RGE GQS T L VA + + +L G FS I +
Sbjct: 131 WNTVRGEDLGGQSFVVTQGDLRLVAHRIADYVYEKLTGQRGIFSTR---IAYVTKAGSRY 187
Query: 355 GIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD 413
+ +A SDG + + + +WSP+ + Y S F+S + V + VS
Sbjct: 188 SLWVADSDGENAQSALSSPEPIISPAWSPSGTQLAYVS----FESRKPVVYVHDVS---- 239
Query: 414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
R + + + G+N+ P+ SPDG+ L R G L+ +DA GE
Sbjct: 240 ----TGRRRLIANFR-------GSNSAPAWSPDGRTLAVTLSRDGSSQLYTIDANGGE-- 286
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP 533
R+L IDT P++S G I F S+R A +Y + G R+ G
Sbjct: 287 --PRRLMQSSGIDTEPTYSSDGRSIYFVSDRGG-----APQIYRVPATGGSAERVTFTGA 339
Query: 534 EGSGDVDRERINHVCFSADGEWLLFTANLGAV 565
S DG+WL + + +G
Sbjct: 340 YNISP---------SISPDGKWLAYISRVGGA 362
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 27/190 (14%)
Query: 328 LRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHV 387
R + S P++SPDG + + ++ + ++G + L++ ++
Sbjct: 249 FRGSNSAPAWSPDGRTLAVTLSRDGSSQLYTIDANGGEPRRLMQSSGIDTEPTYSSDGRS 308
Query: 388 IYTSTGPIFQSERATV-QIARVSFQLDPSDDNNREEIPCDVKILTKEETGN-NAFPSCSP 445
IY F S+R QI RV P+ + E + TG N PS SP
Sbjct: 309 IY------FVSDRGGAPQIYRV-----PATGGSAERVTF---------TGAYNISPSISP 348
Query: 446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH 505
DGK+L + S G L V+D +G + +TD D PS++P G LI +++ +
Sbjct: 349 DGKWLAYISRVGGAFKLHVMDLTSGS----VTAITD-TTADESPSFAPNGKLIVYATQQQ 403
Query: 506 NPDNVEAFSL 515
+ + +L
Sbjct: 404 GREALMTTTL 413
>gi|453330643|dbj|GAC87389.1| translocation protein TolB [Gluconobacter thailandicus NBRC 3255]
Length = 454
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG +VF S R G L+++ A G R+++ G P WSP+GDLIAF
Sbjct: 310 PCFSPDGSQIVFNSDRGGSPQLYIMSAS----GGGARRISYGSGQYGSPVWSPRGDLIAF 365
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLR 526
+ H FSL V+ PDG+G R
Sbjct: 366 TRIGHG-----GFSLGVMNPDGTGER 386
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 58/119 (48%), Gaps = 18/119 (15%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMPSWSPKGDLIA 499
P SPDG +V + R G ++FV+D + + Q+T G IDT P +SP G I
Sbjct: 265 PRFSPDGSRVVLSATRGGGSDIFVVDLASRSKH----QITSSGGAIDTSPCFSPDGSQIV 320
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRI-HVAGPEGS------GD-VDRERINHVCFS 550
F+S+R LY++ G G RRI + +G GS GD + RI H FS
Sbjct: 321 FNSDRGGSPQ-----LYIMSASGGGARRISYGSGQYGSPVWSPRGDLIAFTRIGHGGFS 374
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 64/171 (37%), Gaps = 51/171 (29%)
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYV-----------------IK 519
R LT G W+ P ++P D +AF S +N V F L
Sbjct: 209 RMLTGGQWLTLTPRFNPARDQVAFMSYANNRPRVYLFDLGSGGQQMLGEFDGISFAPRFS 268
Query: 520 PDGSGLRRIHVAGPEGSGD----VD-RERINHV------------CFSADGEWLLFTANL 562
PDGS R+ ++ G G VD R H CFS DG ++F ++
Sbjct: 269 PDGS---RVVLSATRGGGSDIFVVDLASRSKHQITSSGGAIDTSPCFSPDGSQIVFNSDR 325
Query: 563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G P LY++ G G RR+++ + G+P W P L
Sbjct: 326 G---GSP-----------QLYIMSASGGGARRISYGSGQYGSPVWSPRGDL 362
>gi|402825715|ref|ZP_10874979.1| translocation protein TolB [Sphingomonas sp. LH128]
gi|402260753|gb|EJU10852.1| translocation protein TolB [Sphingomonas sp. LH128]
Length = 463
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 80/197 (40%), Gaps = 43/197 (21%)
Query: 422 EIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD 481
++ D + L P SPDGK++++ + G +++ + + G G ++LT+
Sbjct: 261 DLATDRQTLIARTGAPTLAPRWSPDGKWVLYSMAKGGTTDIYRISSAGG---GTPQRLTN 317
Query: 482 GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI-----HVAGPEGS 536
GP I+ S+SP G I F S+R V YV+ DGS RRI A PE S
Sbjct: 318 GPGINIGGSYSPDGSQIVFESDRSGSQQV-----YVMNSDGSNQRRISFFGGRAATPEWS 372
Query: 537 GDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596
D+ H+ NL + P G G+R LT
Sbjct: 373 PRGDQIAFTHIA-----------GNLRVAVMSP------------------SGGGMRHLT 403
Query: 597 WNGYENGTPAWHPGNQL 613
+ +++ P W P ++
Sbjct: 404 -DSWQDEAPTWSPNGRI 419
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 105/250 (42%), Gaps = 49/250 (19%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGS-------------FPSFSPDG 341
Y R GES S I ++ P +K L ++ +G+ P +SPD
Sbjct: 183 YSRLSGESPFFDSKIAYIAETGPKDHRMKRLAIMDSDGANHRFLTSGQSMALTPRYSPDY 242
Query: 342 GLIVFNHDFELNAGIKIAKSD-GSKRWTLIKDRTA--FYNSWSPTEKHVIYTSTGPIFQS 398
I++ LN I D + R TLI A WSP K V+Y+ +
Sbjct: 243 SKIMYLS--YLNGQPSIYAYDLATDRQTLIARTGAPTLAPRWSPDGKWVLYS------MA 294
Query: 399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG 458
+ T I R+S + + + G N S SPDG +VF S RSG
Sbjct: 295 KGGTTDIYRIS----SAGGGTPQRL--------TNGPGINIGGSYSPDGSQIVFESDRSG 342
Query: 459 HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVI 518
+ ++V+++ +G + R+++ P WSP+GD IAF+ H N+ + V+
Sbjct: 343 SQQVYVMNS-DGS---NQRRISFFGGRAATPEWSPRGDQIAFT---HIAGNLR---VAVM 392
Query: 519 KPDGSGLRRI 528
P G G+R +
Sbjct: 393 SPSGGGMRHL 402
>gi|163758790|ref|ZP_02165877.1| translocation protein TolB precursor [Hoeflea phototrophica DFL-43]
gi|162284080|gb|EDQ34364.1| translocation protein TolB precursor [Hoeflea phototrophica DFL-43]
Length = 450
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 74/173 (42%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + +LT IDT PS+SP G I F
Sbjct: 267 PRFSPDGQKVIMSLQQDGNANIYTMDLRSRATT----RLTSTAAIDTSPSYSPDGTQIVF 322
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LY++ DGS RR+ S V +S G+ + FT
Sbjct: 323 ESDRGGRQQ-----LYIMNADGSNQRRVSFGDGSYSTPV---------WSPRGDLIAFTK 368
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V++ DGSG R LT G+ N P W P ++
Sbjct: 369 QSGGKFS--------------IGVMRTDGSGERILT-TGFHNEGPTWAPNGRV 406
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 78/176 (44%), Gaps = 22/176 (12%)
Query: 39 LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA 98
LTD +SI +F + Q I ++S G PR+Y + + + EL+ + P F R
Sbjct: 213 LTDASSIVLTPRFSPSR-QEITYMSFEGGQPRVYLLQLETGQRELVGNFPGMTFSPRFSP 271
Query: 99 RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVAS 158
K+ I + +Q + +Y+ DL++ TRLT +D SPS S G I S
Sbjct: 272 DGQKV--IMSLQQDGN-----ANIYTMDLRSRATTRLTSTAAIDTSPSYSPDGTQIVFES 324
Query: 159 YESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGW--PTWS--GDSTIYFHRQA 210
R + + +N D N+R + G + P WS GD I F +Q+
Sbjct: 325 --DRGGRQQLYIMNAD-------GSNQRRVSFGDGSYSTPVWSPRGD-LIAFTKQS 370
>gi|414341365|ref|YP_006982886.1| translocation protein TolB [Gluconobacter oxydans H24]
gi|411026700|gb|AFV99954.1| translocation protein TolB [Gluconobacter oxydans H24]
Length = 454
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG +VF S R G L+++ A G R+++ G P WSP+GDLIAF
Sbjct: 310 PCFSPDGSQIVFNSDRGGSPQLYIMSAS----GGGARRISYGSGQYGSPVWSPRGDLIAF 365
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLR 526
+ H FSL V+ PDG+G R
Sbjct: 366 TRIGHG-----GFSLGVMNPDGTGER 386
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 58/119 (48%), Gaps = 18/119 (15%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMPSWSPKGDLIA 499
P SPDG +V + R G ++FV+D + + Q+T G IDT P +SP G I
Sbjct: 265 PRFSPDGSRVVLSATRGGGSDIFVVDLASRSKH----QITSSGGAIDTSPCFSPDGSQIV 320
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRI-HVAGPEGS------GD-VDRERINHVCFS 550
F+S+R LY++ G G RRI + +G GS GD + RI H FS
Sbjct: 321 FNSDRGGSPQ-----LYIMSASGGGARRISYGSGQYGSPVWSPRGDLIAFTRIGHGGFS 374
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 64/171 (37%), Gaps = 51/171 (29%)
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYV-----------------IK 519
R LT G W+ P ++P D +AF S +N V F L
Sbjct: 209 RMLTGGQWLTLTPRFNPARDQVAFMSYANNRPRVYLFDLGSGGQQMLGEFDGISFAPRFS 268
Query: 520 PDGSGLRRIHVAGPEGSGD----VD-RERINHV------------CFSADGEWLLFTANL 562
PDGS R+ ++ G G VD R H CFS DG ++F ++
Sbjct: 269 PDGS---RVVLSATRGGGSDIFVVDLASRSKHQITSSGGAIDTSPCFSPDGSQIVFNSDR 325
Query: 563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G P LY++ G G RR+++ + G+P W P L
Sbjct: 326 G---GSP-----------QLYIMSASGGGARRISYGSGQYGSPVWSPRGDL 362
>gi|84623209|ref|YP_450581.1| translocation protein TolB [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|119371067|sp|Q2P570.1|TOLB_XANOM RecName: Full=Protein TolB; Flags: Precursor
gi|84367149|dbj|BAE68307.1| TolB protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 439
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 107/277 (38%), Gaps = 51/277 (18%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A SDG T+++ + +WSP K + Y S F+ +++ +
Sbjct: 186 LMVADSDGYNPQTIVRSAEPLLSPNWSPDGKKLAYVS----FERGNSSIYL--------- 232
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++I + L G N PS SPDG+ L RSG+ ++V+D + +
Sbjct: 233 ------QDIATGARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLT- 285
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI------ 528
QLT+ IDT P+W+P G I F+S+R + Y + G R+
Sbjct: 286 ---QLTNHFGIDTEPTWAPDGGSIYFTSDRGGRPQI-----YQVAASGGSANRVTFQGNY 337
Query: 529 -----------HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG-----AVMAEPVSW 572
+A +GSG+ R + + L +L A A V +
Sbjct: 338 NATASVSFDGKKIAVAQGSGNTYRIAMMDRSLGSPSWSTLSPGSLDESPSFAPNASMVLY 397
Query: 573 PNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ G LY V D +RL + PAW P
Sbjct: 398 AAREGGRGVLYAVSSDARVRQRLVLADGDVREPAWGP 434
>gi|209965095|ref|YP_002298010.1| translocation protein TolB [Rhodospirillum centenum SW]
gi|209958561|gb|ACI99197.1| protein TolB precursor [Rhodospirillum centenum SW]
Length = 451
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 82/199 (41%), Gaps = 44/199 (22%)
Query: 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI 476
D R+E+ D G P SPDG ++ +SG+ +++ LD
Sbjct: 246 DTGRQELLGDFP-------GMTFAPRFSPDGNQVIMSLAQSGNTDIYTLDLRTRRQT--- 295
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS 536
+LTD P IDT PS+SP G I F S+R LY + DGS ++RI G
Sbjct: 296 -RLTDHPGIDTAPSYSPDGKQIVFESDRGGTQQ-----LYTMNADGSNVKRITF----GQ 345
Query: 537 GDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLY--VVKLDGSGLRR 594
G R +S G+ + FT G G Y V++ DG+G R
Sbjct: 346 G-----RYATPVWSPRGDLIAFTRLNG----------------GRFYIGVIRPDGTGERL 384
Query: 595 LTWNGYENGTPAWHPGNQL 613
LT + G P W P ++
Sbjct: 385 LTEAFHVEG-PTWAPNGRV 402
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 10/136 (7%)
Query: 39 LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA 98
LTDG + +F Q I ++S + PR+Y + + ELL P F R
Sbjct: 209 LTDGRVLVLTPRF-SPTAQEITYLSYFNNKPRVYLFNIDTGRQELLGDFPGMTFAPRFSP 267
Query: 99 RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVAS 158
N++ A I Y+ DL+ + TRLT + +D +PS S GK I S
Sbjct: 268 DGNQVIMSLAQSGNTDI-------YTLDLRTRRQTRLTDHPGIDTAPSYSPDGKQIVFES 320
Query: 159 YESRPWPGEFHELNTD 174
R + + +N D
Sbjct: 321 --DRGGTQQLYTMNAD 334
>gi|383767896|ref|YP_005446879.1| hypothetical protein PSMK_28230 [Phycisphaera mikurensis NBRC
102666]
gi|381388166|dbj|BAM04982.1| hypothetical protein PSMK_28230 [Phycisphaera mikurensis NBRC
102666]
Length = 478
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 96/241 (39%), Gaps = 55/241 (22%)
Query: 414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE-- 471
P+ D R+ I ++ N+ P+ SPDG+ + F S RSG +L+++DA G
Sbjct: 176 PTADLYRQAIGGTSVTQLTDDPANDVMPAVSPDGRRIAFASDRSGTWDLYLMDAGGGRAV 235
Query: 472 -------------FNGDIRQLT-------DGPW----IDT-------------MPSWSPK 494
F+ D ++L G W ID P WSP
Sbjct: 236 KLTDDDGHNVHPSFSPDGQRLVYSSFSPHAGGWELVVIDVDRPTKKRIIGRGLFPVWSPA 295
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIK-PDGSGLRRIHVAGPEGSGDVDRERINHVCFSADG 553
D IAF R FS++ ++ DG +R VA + + +S DG
Sbjct: 296 DDTIAFQRARER--GSRWFSVWTVQLEDGEAVRPTEVAVSSNAAVITPR------WSPDG 347
Query: 554 EWLLFTANLGAVMAEPVSWPNQFQPY-GDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQ 612
E L+F L +P QP D++ ++ DGSG +LT N P+W P +
Sbjct: 348 ESLVFCTVLDPAGEDPT------QPTRADVWTIRRDGSGRSKLTTGDAANLQPSWGPDGR 401
Query: 613 L 613
+
Sbjct: 402 V 402
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 87/205 (42%), Gaps = 41/205 (20%)
Query: 410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN 469
Q +PS D + + + +T G++ + +PDG+ L F S R A+
Sbjct: 130 VQPEPSRDGSAD---AGLSRITSTTEGDDFDVAPAPDGETLYFASTRHRPTADLYRQAIG 186
Query: 470 GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH 529
G + QLTD P D MP+ SP G IAF+S+R + LY++ D G R +
Sbjct: 187 GT---SVTQLTDDPANDVMPAVSPDGRRIAFASDRSG-----TWDLYLM--DAGGGRAVK 236
Query: 530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG---DLYVVK 586
+ D D + H FS DG+ L++++ F P+ +L V+
Sbjct: 237 LT------DDDGHNV-HPSFSPDGQRLVYSS---------------FSPHAGGWELVVID 274
Query: 587 LDGSGLRRLTWNGYENGTPAWHPGN 611
+D +R+ G P W P +
Sbjct: 275 VDRPTKKRIIGRGL---FPVWSPAD 296
>gi|126733593|ref|ZP_01749340.1| translocation protein TolB precursor [Roseobacter sp. CCS2]
gi|126716459|gb|EBA13323.1| translocation protein TolB precursor [Roseobacter sp. CCS2]
Length = 438
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 9/83 (10%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG +VF S RSG++ L+V+ A GE R+++ G P WSP+GDL+AF
Sbjct: 298 PSLSPDGSQIVFESDRSGNQQLYVMSANGGE----ARRISFGQGRYGTPVWSPRGDLVAF 353
Query: 501 SSNRHNPDNVEAFSLYVIKPDGS 523
+ N F + V++ DGS
Sbjct: 354 TKQ-----NAGRFHIGVMRIDGS 371
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 77/183 (42%), Gaps = 38/183 (20%)
Query: 436 GNNAF-PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
G AF P S DG+ +++ G+ +++ D G+ +LT P I+T PS SP
Sbjct: 248 GEMAFSPRFSRDGRQVIYSLSNGGNTDIYRTDLSTGQH----VRLTSAPSIETAPSLSPD 303
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
G I F S+R LYV+ +G RRI G G R +S G+
Sbjct: 304 GSQIVFESDRSGNQQ-----LYVMSANGGEARRISF----GQG-----RYGTPVWSPRGD 349
Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLY--VVKLDGSGLRRLTWNGYENGTPAWHPGNQ 612
+ FT Q G + V+++DGS R LT + + G P W P +
Sbjct: 350 LVAFTK----------------QNAGRFHIGVMRIDGSEERLLTSSFLDEG-PTWSPNGR 392
Query: 613 LDL 615
+ +
Sbjct: 393 VIM 395
>gi|374853279|dbj|BAL56191.1| TolB protein [uncultured candidate division OP1 bacterium]
gi|374857082|dbj|BAL59935.1| TolB protein [uncultured candidate division OP1 bacterium]
Length = 280
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 34/182 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ +PDGK L+ S R G +L++LD + G + +LT PW + P+WSPK D I F
Sbjct: 121 PNWTPDGKILL-ESFRDGWPDLYLLDPLTGI----LERLTQDPWREAFPAWSPKNDKIVF 175
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+S R ++ LY ++P+G +++ +G+G +S DG +++F A
Sbjct: 176 ASYREG-----SWDLYAMRPNGLVRQKLT----DGNG-----IYRSPTWSRDGRFIVFEA 221
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP-GNQLDLGKLR 619
G D+ + DG L LT + Y + +P+ P G ++ LR
Sbjct: 222 VRGD--------------ESDIARIDADGQHLTWLTRDIYRDSSPSLSPDGRRIVYTSLR 267
Query: 620 LE 621
E
Sbjct: 268 GE 269
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 83/181 (45%), Gaps = 32/181 (17%)
Query: 431 TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS 490
T+ + N+ P SPDG +VF S R G+ +++L D+++LT P D P
Sbjct: 22 TQPKDFNDWAPDWSPDGTKIVFVSDRDGNSEIYLLTLTPVT---DLKRLTVQPGSDLGPR 78
Query: 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS 550
+SP G IAF S+R + +Y++ DGSG+ R+ G+ D D ++
Sbjct: 79 FSPDGTKIAFYSSRDG-----NYEIYLMNADGSGVTRLT---QHGATDWDPN------WT 124
Query: 551 ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPG 610
DG+ LL + G WP DLY++ L RLT + + PAW P
Sbjct: 125 PDGKILLESFRDG--------WP-------DLYLLDPLTGILERLTQDPWREAFPAWSPK 169
Query: 611 N 611
N
Sbjct: 170 N 170
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 95/209 (45%), Gaps = 32/209 (15%)
Query: 307 EGQSTIPHLEPVASPVKELRMLRLN-GS--FPSFSPDGGLIVFNHDFELNAGIKIAKSDG 363
+G S I L +PV +L+ L + GS P FSPDG I F + N I + +DG
Sbjct: 48 DGNSEIYLL--TLTPVTDLKRLTVQPGSDLGPRFSPDGTKIAFYSSRDGNYEIYLMNADG 105
Query: 364 SKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREE 422
S L + ++ +W+P K ++ + F+ + + LDP
Sbjct: 106 SGVTRLTQHGATDWDPNWTPDGKILLES-----FRDGWPDL------YLLDP-------- 146
Query: 423 IPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ-LTD 481
+ ++ LT ++ AFP+ SP +VF S R G +L+ + NG +RQ LTD
Sbjct: 147 LTGILERLT-QDPWREAFPAWSPKNDKIVFASYREGSWDLYAMRP-----NGLVRQKLTD 200
Query: 482 GPWIDTMPSWSPKGDLIAFSSNRHNPDNV 510
G I P+WS G I F + R + ++
Sbjct: 201 GNGIYRSPTWSRDGRFIVFEAVRGDESDI 229
>gi|384420253|ref|YP_005629613.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Xanthomonas oryzae pv. oryzicola BLS256]
gi|353463166|gb|AEQ97445.1| Tol-Pal system beta propeller repeat protein TolB [Xanthomonas
oryzae pv. oryzicola BLS256]
Length = 439
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 107/277 (38%), Gaps = 51/277 (18%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A SDG T+++ + +WSP K + Y S F+ +++ +
Sbjct: 186 LMVADSDGYNPQTIVRSAEPLLSPNWSPDGKKLAYVS----FERGNSSIYL--------- 232
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++I + L G N PS SPDG+ L RSG+ ++V+D + +
Sbjct: 233 ------QDIATGARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLT- 285
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI------ 528
QLT+ IDT P+W+P G I F+S+R + Y + G R+
Sbjct: 286 ---QLTNHFGIDTEPTWAPDGGSIYFTSDRGGRPQI-----YQVAASGGSANRVTFQGNY 337
Query: 529 -----------HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG-----AVMAEPVSW 572
+A +GSG+ R + + L +L A A V +
Sbjct: 338 NATASVSFDGKKIAVAQGSGNTYRIAMVDRSLGSPSWSTLSPGSLDESPSFAPNASMVLY 397
Query: 573 PNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ G LY V D +RL + PAW P
Sbjct: 398 AAREGGRGVLYAVSSDARVRQRLVLADGDVREPAWGP 434
>gi|406934142|gb|EKD68537.1| Periplasmic component of the Tol biopolymer transport system,
partial [uncultured bacterium]
Length = 653
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 18/117 (15%)
Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503
SPDG +VF S R G+ ++++ N + +G + LT+ DT P++SP G I FSS+
Sbjct: 518 SPDGSKIVFVSDRDGNNEIYIM---NSDGSG-LANLTNNAKNDTDPNFSPDGKKIVFSSD 573
Query: 504 RHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
R P + Y + DG+GL RI G C+S DG ++F+A
Sbjct: 574 RDGPGQI-----YTMNADGTGLARITSGGL---------NCFEPCYSPDGRKIVFSA 616
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 28/136 (20%)
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP 533
G + LT+ P D +SP G I F S+R + + Y++ DGSGL +
Sbjct: 500 GSLVNLTNNPAADVTSKFSPDGSKIVFVSDRDGNNEI-----YIMNSDGSGLANLT---N 551
Query: 534 EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR 593
D D FS DG+ ++F+++ + P G +Y + DG+GL
Sbjct: 552 NAKNDTDPN------FSPDGKKIVFSSD-------------RDGP-GQIYTMNADGTGLA 591
Query: 594 RLTWNGYENGTPAWHP 609
R+T G P + P
Sbjct: 592 RITSGGLNCFEPCYSP 607
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 20/121 (16%)
Query: 442 SCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFS 501
+ SPDG + + R G+ LFV+D + R+LT D P ++ I F+
Sbjct: 141 AISPDGTKIAYSGIRDGNIELFVMDLKTYK----KRRLTSNSSSDDEPCFTADSSKIIFT 196
Query: 502 SNRHNPDNVEAFSLYVIKPDGSGLRRI-HVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
SNR F LY + DGS R+ + A E S V + DG LL+T+
Sbjct: 197 SNREGN-----FELYSMNADGSSQTRLTNNAYDESSPYVAK----------DGLMLLYTS 241
Query: 561 N 561
N
Sbjct: 242 N 242
>gi|218887448|ref|YP_002436769.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218758402|gb|ACL09301.1| Tol-Pal system beta propeller repeat protein TolB [Desulfovibrio
vulgaris str. 'Miyazaki F']
Length = 446
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 107/253 (42%), Gaps = 46/253 (18%)
Query: 316 EPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH--DFELNAGIKIAKSDGSKRWTLIKDR 373
+P ++++ L PS+SPD IVF+H D G+ + ++R
Sbjct: 201 KPTGRDLRQITNLPGEAMSPSWSPDARFIVFSHMDDRTHALGVWDRLTRQTQRIKF-PGN 259
Query: 374 TAFYNSWSPTEKHVIYTSTGP---------IFQSERATVQIARVSFQLDPSDDNNREEIP 424
T ++ P K + STG +FQ ERA A S + PS D ++
Sbjct: 260 TVIGPTFMPDNKVAVSLSTGKNPGIFLLSHVFQKERALEDSA--SIDVSPSFDATGTKMA 317
Query: 425 -CD---------VKILTKEE------TGN-NAFPSCSPDGKFLVF-RSGRSGHKNLFVLD 466
C +K LT + +GN N PS SPDG + F R GH+ +FV D
Sbjct: 318 FCSSRLGGPQIFLKDLTTGQVTRISRSGNYNTAPSISPDGTLIAFARMTDFGHR-IFVYD 376
Query: 467 AVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526
V RQ+T GP D PS++P +AF+S R A +Y+I G +
Sbjct: 377 MVTQS----ERQVTFGPGTDETPSFAPDSYFLAFTSTRSG-----AKQIYLITRHGGDAK 427
Query: 527 RIHVAGPEGSGDV 539
R+ P G+GD
Sbjct: 428 RV----PTGAGDA 436
>gi|182681495|ref|YP_001829655.1| translocation protein TolB [Xylella fastidiosa M23]
gi|417558582|ref|ZP_12209549.1| Periplasmic component of the Tol biopolymer transport system
[Xylella fastidiosa EB92.1]
gi|182631605|gb|ACB92381.1| Tol-Pal system beta propeller repeat protein TolB [Xylella
fastidiosa M23]
gi|338178888|gb|EGO81866.1| Periplasmic component of the Tol biopolymer transport system
[Xylella fastidiosa EB92.1]
Length = 474
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 108/284 (38%), Gaps = 57/284 (20%)
Query: 352 LNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410
+ + +A SDG T+++ + WS K + Y S F+ +++ I
Sbjct: 217 MRYALMVADSDGYNPQTIVRSAEPLLSPDWSSDGKKLAYVS----FEKGGSSIYI----- 267
Query: 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG 470
++I + L G NA PS +PDG + RSG+ ++V+D V+
Sbjct: 268 ----------QDIATGSRELVSSFRGINAAPSFAPDGHRIALSLSRSGNPEIYVMDLVSK 317
Query: 471 EFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530
+ + QLT+ IDT P WS G I F+S+R + Y + G R+
Sbjct: 318 Q----LIQLTNSFGIDTEPVWSSDGKFIYFTSDRGGRPQI-----YKVASVGGAATRVTF 368
Query: 531 AG-----------------PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP 573
G +GSG+V R + + G + T + G++ P P
Sbjct: 369 QGNYNASASVSYDDKKIVVAQGSGNVYRIAMMD---QSSGSTVWNTLSTGSLDESPSFAP 425
Query: 574 NQFQPY--------GDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
N G LY V D +RL + PAW P
Sbjct: 426 NASMVLYAAREGGRGVLYAVSADARVRQRLVSVDSDVREPAWGP 469
>gi|372277900|ref|ZP_09513936.1| translocation protein TolB [Pantoea sp. SL1_M5]
gi|390435900|ref|ZP_10224438.1| translocation protein TolB [Pantoea agglomerans IG1]
Length = 431
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 100/228 (43%), Gaps = 30/228 (13%)
Query: 328 LRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKH 386
L+L G +F +V + + +++A DG ++ + + + +WSP
Sbjct: 155 LKLTGIKGAFRTRIAYVVQTNGGQFPYELRVADYDGYNQFVVHRSPQPLMSPAWSPDGSK 214
Query: 387 VIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD 446
V Y + F+S ++ + + +S + +I + +N P+ SPD
Sbjct: 215 VAYVT----FESGKSALVVQTLS-------NGAIRQIASYPR--------HNGAPAFSPD 255
Query: 447 GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHN 506
G L F ++G NL+V+D +G+ RQ+TDG + T P+W P +A++S
Sbjct: 256 GSKLAFALSKTGSLNLYVMDLASGQ----TRQITDGRYNSTEPTWFPDSQTLAYTS---- 307
Query: 507 PDNVEAFSLYVIKPDGSGLRRIHVAGPEGS-GDVDRERINHVCFSADG 553
D A +Y + +G +RI G + DV + + V S +G
Sbjct: 308 -DQAGAPQIYKVGLNGGAPQRITWEGGQNQDADVATDGKSMVMISTNG 354
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG + + + SG L V NG IRQ+ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKVAYVTFESGKSALVVQTLSNGA----IRQIASYPRHNGAPAFSPDGSKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ R+I R + D + L +T+
Sbjct: 262 ALSKTG-----SLNLYVMDLASGQTRQITDG---------RYNSTEPTWFPDSQTLAYTS 307
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +Y V L+G +R+TW G +N
Sbjct: 308 DQAGAP--------------QIYKVGLNGGAPQRITWEGGQN 335
>gi|448746416|ref|ZP_21728084.1| Tol-Pal system beta propeller repeat-containing protein, Tol
[Halomonas titanicae BH1]
gi|445566278|gb|ELY22385.1| Tol-Pal system beta propeller repeat-containing protein, Tol
[Halomonas titanicae BH1]
Length = 431
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 73/166 (43%), Gaps = 24/166 (14%)
Query: 351 ELNAGIKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVS 409
++ G+ +A +DG + L D +WSP + Y S F++ER + I
Sbjct: 177 DMQFGLYVADADGRRSEQVLTSDEPIMSPAWSPDGTKLAYVS----FETERPAIYI---- 228
Query: 410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN 469
+++ ++ G N P+ SPDG+ + + G ++++D N
Sbjct: 229 -----------QDVATGQRVQATSFDGINGAPAWSPDGRRIAMSLSKDGQPEIYIMDVAN 277
Query: 470 GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSL 515
+ ++T+ IDT P+W+P G + F+S+R + ++L
Sbjct: 278 RS----VERITNNNSIDTEPAWAPDGRSLLFTSDRSGGPQLYQYTL 319
>gi|345304140|ref|YP_004826042.1| peptidase S41 [Rhodothermus marinus SG0.5JP17-172]
gi|345113373|gb|AEN74205.1| peptidase S41 [Rhodothermus marinus SG0.5JP17-172]
Length = 1067
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 125/559 (22%), Positives = 198/559 (35%), Gaps = 148/559 (26%)
Query: 124 STDLKASKFTRLTPYGVVD---YSPSVSYSGKFIAVASYESRPWP-GEFHELNTDIVVFQ 179
+++A T TP ++D + ++S G+F+A + W G + D+ +F
Sbjct: 129 EAEIQAIPDTGGTPVRILDATGFQATLSPDGRFLAFERGSNATWRRGYRGSADRDLWLFD 188
Query: 180 ESDPNKRVIVCERGG--WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTR 237
R + G P W+G T+ F + D G ++++R++ E+ G P TR
Sbjct: 189 LQARIFRRLTDFDGNDYLPAWAGPRTLLFISERD-GTYNLYRLTLSEDGTPQGAPEQLTR 247
Query: 238 VTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL---NPNFHHYNPFVSANSE 294
GV FT +A DG+ +A R ++Y LT P +
Sbjct: 248 FEGDGVRYFTVSA--DGRTIAFE--------RQTDLYVLTFPEGTPRRLEIQVPYDERFD 297
Query: 295 FIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA 354
+ H F ++TE L +G + +F G L + +D E N
Sbjct: 298 PVERHTFTSDATE------------------YALSPDGRYVAFVVRGELFLRRNDPEDNR 339
Query: 355 GIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++ + + W + + +T +F S+RA + D
Sbjct: 340 TVRLTR-----------------HPWRDRDPAWLDDAT-LVFVSDRAGQYDLYLLRAADA 381
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ E + +V LT + + P +PDG+ LVFR GR +L V G+
Sbjct: 382 ETSDLFESLTHEVVRLT-DTPEDEREPVVAPDGRHLVFRRGR----GTLLLARVEGDRLQ 436
Query: 475 DIRQLTDG-------------PWI---------------------------------DTM 488
R L DG WI DT
Sbjct: 437 ITRTLLDGWATPEDVAWSPDSRWIAYSLPDLDFNTEVYIQPIDGSRPPVNVSQHPRPDTH 496
Query: 489 PSWSPKGDLIAFSSNRHNPD---------------NVEAFSLYVIKPDGSGLRRIHVAGP 533
P WSP G +AF S R + D E + +PD RR + GP
Sbjct: 497 PVWSPDGSKLAFLSPRSSGDVDVWFAWLRRADWERTEEEWEALEKQPDRK--RRDTLTGP 554
Query: 534 EGSGDVDRERIN--------------HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPY 579
+D ERI+ + S DGE F AN G + ++
Sbjct: 555 I---QIDLERIHERLRRVTALPGNEAELAVSKDGETFYFVANRGGRTQD-------YEAE 604
Query: 580 GDLYVVKLDGSGLRRLTWN 598
DLY ++ DGS L+RLT N
Sbjct: 605 VDLYRIRWDGSELKRLTEN 623
Score = 45.8 bits (107), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 69/172 (40%), Gaps = 24/172 (13%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497
A+P SPDG+ + F S R GH +LFV++ F G R+LT D + W+ G L
Sbjct: 60 EAYPRWSPDGRRIAFTSDRYGHDDLFVMEL----FGGPPRRLTYHSADDMLTDWTRDGRL 115
Query: 498 IAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL 557
+ + EA + G+ +R + G + + S DG +L
Sbjct: 116 LFQTRRLFVQVEREAEIQAIPDTGGTPVRILDATGFQAT------------LSPDGRFLA 163
Query: 558 FTANLGAVMAEPVSWPNQFQPYG--DLYVVKLDGSGLRRLTWNGYENGTPAW 607
F A +W ++ DL++ L RRLT + PAW
Sbjct: 164 FERGSNA------TWRRGYRGSADRDLWLFDLQARIFRRLTDFDGNDYLPAW 209
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 440 FPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
+P+ P G+ +VF S +L+++ G ++LT P + P WSP G IA
Sbjct: 22 YPAIDPSGRQIVF----SYQGDLWLVPVTGGM----AQRLTVHPAYEAYPRWSPDGRRIA 73
Query: 500 FSSNRHNPDNVEAFSLY 516
F+S+R+ D++ L+
Sbjct: 74 FTSDRYGHDDLFVMELF 90
>gi|410943001|ref|ZP_11374742.1| translocation protein TolB [Gluconobacter frateurii NBRC 101659]
Length = 454
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG +VF S R G L+++ G G R+++ G P WSP+GDLIAF
Sbjct: 310 PCFSPDGSQIVFNSDRGGSPQLYIM----GASGGGARRISYGSGQYGSPVWSPRGDLIAF 365
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLR 526
+ H FSL V+ PDG+G R
Sbjct: 366 TRIGHG-----GFSLGVMNPDGTGER 386
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 62/130 (47%), Gaps = 18/130 (13%)
Query: 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTM 488
+ E G + P SPDG +V + R G ++FV+D + + Q+T G IDT
Sbjct: 254 MLGEFDGISFAPRFSPDGSRVVLSATRGGGSDIFVVDLGSRSKH----QITSSGGAIDTS 309
Query: 489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI-HVAGPEGS------GD-VD 540
P +SP G I F+S+R LY++ G G RRI + +G GS GD +
Sbjct: 310 PCFSPDGSQIVFNSDRGGSPQ-----LYIMGASGGGARRISYGSGQYGSPVWSPRGDLIA 364
Query: 541 RERINHVCFS 550
RI H FS
Sbjct: 365 FTRIGHGGFS 374
Score = 46.2 bits (108), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 64/171 (37%), Gaps = 51/171 (29%)
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYV-----------------IK 519
R LT G W+ P ++P D +AF S +N V F L
Sbjct: 209 RMLTGGQWLTLTPRFNPARDQVAFMSYANNRPRVYLFDLGSGRQQMLGEFDGISFAPRFS 268
Query: 520 PDGSGLRRIHVAGPEGSG------DVDRERINHV-----------CFSADGEWLLFTANL 562
PDGS R+ ++ G G D+ + + CFS DG ++F ++
Sbjct: 269 PDGS---RVVLSATRGGGSDIFVVDLGSRSKHQITSSGGAIDTSPCFSPDGSQIVFNSDR 325
Query: 563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G P LY++ G G RR+++ + G+P W P L
Sbjct: 326 GG---SP-----------QLYIMGASGGGARRISYGSGQYGSPVWSPRGDL 362
>gi|339022588|ref|ZP_08646516.1| secretion system type I outer membrane protein TolB [Acetobacter
tropicalis NBRC 101654]
gi|338750402|dbj|GAA09820.1| secretion system type I outer membrane protein TolB [Acetobacter
tropicalis NBRC 101654]
Length = 454
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ +V R+G +LFV+D +G RQ+T IDT PS+SP G I F
Sbjct: 266 PRFSPDGRSVVLSVTRNGGSDLFVVDLASGSR----RQITASGAIDTSPSYSPDGSQIVF 321
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
+S+R LY++ G G RRI
Sbjct: 322 NSDRGGSPQ-----LYIMSASGGGARRI 344
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 9/86 (10%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG +VF S R G L+++ A G R+++ G P WSP+GDLIAF
Sbjct: 310 PSYSPDGSQIVFNSDRGGSPQLYIMSASGG----GARRISYGNGTYGSPVWSPRGDLIAF 365
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLR 526
+ + +FSL V+ PDG+G R
Sbjct: 366 TRIANG-----SFSLGVMNPDGTGER 386
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 75/187 (40%), Gaps = 32/187 (17%)
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDN 509
+ RSG H+ + A+ + + R LT G W+ P +SP D +AF S +N
Sbjct: 185 FISRSGARAHQRTRL--AIMDQDGANARMLTAGNWLTLTPRFSPVKDQVAFMSYANNRPR 242
Query: 510 VEAFSLYVIKPDGSGLRRI--HVAG--------PEGSGDVDRERINH-----VCFSADGE 554
V F L GSG ++I AG P+G V N V A G
Sbjct: 243 VYLFDL------GSGRQQILGEFAGISFAPRFSPDGRSVVLSVTRNGGSDLFVVDLASGS 296
Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGD--------LYVVKLDGSGLRRLTWNGYENGTPA 606
TA+ GA+ P P+ Q + LY++ G G RR+++ G+P
Sbjct: 297 RRQITAS-GAIDTSPSYSPDGSQIVFNSDRGGSPQLYIMSASGGGARRISYGNGTYGSPV 355
Query: 607 WHPGNQL 613
W P L
Sbjct: 356 WSPRGDL 362
>gi|416954569|ref|ZP_11935716.1| translocation protein TolB [Burkholderia sp. TJI49]
gi|325522835|gb|EGD01305.1| translocation protein TolB [Burkholderia sp. TJI49]
Length = 431
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 24/150 (16%)
Query: 356 IKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG + R L SWSP+ V Y S F+ ++ V I
Sbjct: 178 LQISDSDGQNARIALSSTEPIISPSWSPSGTKVAYVS----FERKKPIVYI--------- 224
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++P + + ++ GNN+ P+ SPDG L +G+ ++ +++ G
Sbjct: 225 ------HDLPTGHRYIVSDQKGNNSAPAWSPDGNTLAVALSLTGNTQIYTVNST----GG 274
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
+R+LT IDT P +SP G I F+S+R
Sbjct: 275 GLRRLTQSSSIDTEPYYSPDGRWIYFTSDR 304
>gi|222086973|ref|YP_002545507.1| translocation protein TolB [Agrobacterium radiobacter K84]
gi|221724421|gb|ACM27577.1| Tol-Pal system beta propeller repeat protein TolB [Agrobacterium
radiobacter K84]
Length = 441
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 75/175 (42%), Gaps = 33/175 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + IDT PS+SP G +AF
Sbjct: 258 PRFSPDGQRVIMSLQQEGNANIYTMDLRSRTTTRLTSTAA----IDTSPSYSPDGTQVAF 313
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGS RRI +GS + +S G+ + FT
Sbjct: 314 ESDRGGKQQI-----YVMNADGSNQRRISFG--DGS-------YSTPVWSPRGDLIAFTK 359
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDL 615
G + + V+K DGSG R LT G+ N P W P ++ +
Sbjct: 360 QSGGSFS--------------IGVMKTDGSGERLLT-TGFHNEGPTWAPNGRVIM 399
>gi|410672132|ref|YP_006924503.1| WD40-like beta propeller protein [Methanolobus psychrophilus R15]
gi|409171260|gb|AFV25135.1| WD40-like beta propeller protein [Methanolobus psychrophilus R15]
Length = 357
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 123/278 (44%), Gaps = 60/278 (21%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGP 394
PS+SPDG + + + N GI + +DGS I D A+ S P H +
Sbjct: 51 PSWSPDGKKLTYAY----NQGIWVMNADGSGT-KKIYDTLAW--SGDPVFNH---DGSKI 100
Query: 395 IFQSERATVQIAR-VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453
+ +E T AR +S + +D +N +VK+ T ++ PS SPD + + +
Sbjct: 101 YYATESRTAYSARYISLHVMNADGSN------NVKLTG---TSDSKEPSVSPDDRSIAYV 151
Query: 454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF 513
S SG+ +++++D + + Q+TD + PSWSP G + +S +E
Sbjct: 152 SKISGNYDIWIMDISSRKS----VQVTDDKGDEASPSWSPDGTRLLYS--------LEG- 198
Query: 514 SLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV--CFSADGEWLLFTANLGAVMAEPVS 571
+Y +PD R+ + N++ +S G+ ++F+++
Sbjct: 199 DIYTQEPDAVKATRLT-----------DDEFNNIEPAYSPQGDMIVFSSDRDGSY----- 242
Query: 572 WPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
DL++++ DG+G+++LT +PAW P
Sbjct: 243 ---------DLWIMRTDGTGMKKLTMEKSNERSPAWSP 271
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 79/188 (42%), Gaps = 28/188 (14%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTG 393
PS SPD I + N I I K + D+ + SWSP ++Y+ G
Sbjct: 139 PSVSPDDRSIAYVSKISGNYDIWIMDISSRKSVQVTDDKGDEASPSWSPDGTRLLYSLEG 198
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453
I+ E V+ R LT +E NN P+ SP G +VF
Sbjct: 199 DIYTQEPDAVKATR----------------------LTDDEF-NNIEPAYSPQGDMIVFS 235
Query: 454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF 513
S R G +L+++ +G +++LT + P+WSP+G IA+ SN N+
Sbjct: 236 SDRDGSYDLWIM-RTDGT---GMKKLTMEKSNERSPAWSPEGSRIAYISNEGGEYNLWVL 291
Query: 514 SLYVIKPD 521
L V KP+
Sbjct: 292 KLRVEKPE 299
>gi|398382304|ref|ZP_10540398.1| tol-pal system beta propeller repeat protein TolB [Rhizobium sp.
AP16]
gi|397717799|gb|EJK78403.1| tol-pal system beta propeller repeat protein TolB [Rhizobium sp.
AP16]
Length = 441
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 75/175 (42%), Gaps = 33/175 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + IDT PS+SP G +AF
Sbjct: 258 PRFSPDGQRVIMSLQQEGNANIYTMDLRSRTTTRLTSTAA----IDTSPSYSPDGTQVAF 313
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGS RRI +GS + +S G+ + FT
Sbjct: 314 ESDRGGKQQI-----YVMNADGSNQRRISFG--DGS-------YSTPVWSPRGDLIAFTK 359
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDL 615
G + + V+K DGSG R LT G+ N P W P ++ +
Sbjct: 360 QSGGSFS--------------IGVMKTDGSGERLLT-TGFHNEGPTWAPNGRVIM 399
>gi|117923781|ref|YP_864398.1| TolB domain-containing protein [Magnetococcus marinus MC-1]
gi|117607537|gb|ABK42992.1| TolB, N-terminal domain protein [Magnetococcus marinus MC-1]
Length = 450
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G N+ P+ SPDG + + G+ ++V+D N +++LT IDT PSWSP G
Sbjct: 260 GLNSTPAWSPDGNRMALTLSKDGNSEIYVIDMRNQS----LQRLTYNAAIDTSPSWSPDG 315
Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADG 553
+ F+S+R LY++ DGS +RR+ G + R + + F G
Sbjct: 316 RRMVFTSDRAGTPQ-----LYIMDADGSDVRRLTQRGQSSTAPSWSNRGDKIAFVRGG 368
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 97/244 (39%), Gaps = 36/244 (14%)
Query: 275 DLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSF 334
DL L P F S N E + Y + ES+E + + L VK LN S
Sbjct: 216 DLVLTPRF-------SPNGEQLLYISY--ESSEPRIYLWDLY-TGKRVKRSNYPGLN-ST 264
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTG 393
P++SPDG + + N+ I + L + + SWSP + +++TS
Sbjct: 265 PAWSPDGNRMALTLSKDGNSEIYVIDMRNQSLQRLTYNAAIDTSPSWSPDGRRMVFTS-- 322
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453
+RA QL D + DV+ LT+ + A PS S G + F
Sbjct: 323 -----DRAGTP------QLYIMDADG-----SDVRRLTQRGQSSTA-PSWSNRGDKIAFV 365
Query: 454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF 513
G G + V+D G QL W+D P+WSP G +I FS + F
Sbjct: 366 RGGGGKFRIAVIDPT-----GRDEQLLTDSWMDESPTWSPNGRVILFSRQQQGSSRTRLF 420
Query: 514 SLYV 517
++ +
Sbjct: 421 TIDI 424
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 32/167 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SP+G+ L++ S S +++ D + G + ++ P +++ P+WSP G+ +A
Sbjct: 221 PRFSPNGEQLLYISYESSEPRIYLWDL----YTGKRVKRSNYPGLNSTPAWSPDGNRMAL 276
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ N E +YVI L+R+ + +D +S DG ++FT+
Sbjct: 277 TLSKDG--NSE---IYVIDMRNQSLQRLTY-----NAAID----TSPSWSPDGRRMVFTS 322
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
+ LY++ DGS +RRLT G + P+W
Sbjct: 323 DRAGT--------------PQLYIMDADGSDVRRLTQRGQSSTAPSW 355
>gi|310816577|ref|YP_003964541.1| translocation protein TolB precursor [Ketogulonicigenium vulgare
Y25]
gi|385234189|ref|YP_005795531.1| translocation protein TolB [Ketogulonicigenium vulgare WSH-001]
gi|308755312|gb|ADO43241.1| translocation protein TolB precursor [Ketogulonicigenium vulgare
Y25]
gi|343463100|gb|AEM41535.1| Translocation protein TolB [Ketogulonicigenium vulgare WSH-001]
Length = 442
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 39/173 (22%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG +VF S RSG L+V+ A NG G+ R+++ G P WSP+GD+IAF
Sbjct: 302 PSLSPDGSQIVFESDRSGTTQLYVMGA-NG---GEARRISFGDGRYGTPVWSPRGDMIAF 357
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA----GPEGSGDVDRERINHVCFSADGEWL 556
+ + F + V++ DGS R + + GP ++ +G L
Sbjct: 358 TKQQGG-----RFHIGVMRTDGSEERLLTSSFLDEGP--------------TWAPNGRML 398
Query: 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+FT P +Y V + G LR++ + + P+W P
Sbjct: 399 MFTRETQGETGGP-----------SIYSVDISGRNLRQVATGSFAS-DPSWGP 439
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 100/235 (42%), Gaps = 53/235 (22%)
Query: 380 WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNA 439
+SPT ++YTS +QS + + LD + + R+ +P +V G A
Sbjct: 215 FSPTGAQILYTS----YQSGAPRINL------LDVASASARQ-LPTEV--------GEMA 255
Query: 440 F-PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
F P S DG +++ G+ +++ D G G R LT+ P I+T PS SP G I
Sbjct: 256 FSPRFSRDGGSVIYSLANGGNTDIYRTDIRTG---GHTR-LTNAPSIETSPSLSPDGSQI 311
Query: 499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLF 558
F S+R LYV+ +G RRI G G R +S G+ + F
Sbjct: 312 VFESDRSGTTQ-----LYVMGANGGEARRISF----GDG-----RYGTPVWSPRGDMIAF 357
Query: 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
T G +F + V++ DGS R LT + + G P W P ++
Sbjct: 358 TKQQG----------GRFH----IGVMRTDGSEERLLTSSFLDEG-PTWAPNGRM 397
>gi|422322569|ref|ZP_16403610.1| TolB protein [Achromobacter xylosoxidans C54]
gi|317402474|gb|EFV83042.1| TolB protein [Achromobacter xylosoxidans C54]
Length = 440
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 28/178 (15%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A +DG ++ R + SWSP + Y S F+S + V +
Sbjct: 190 LQVADADGQNPQVALRSREPIISPSWSPDGSKLAYVS----FESGKPVVYV--------- 236
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ ++ GNN+ P SPDG L R G ++++ A G
Sbjct: 237 ------HTLATSARVPVANFKGNNSAPGWSPDGTQLAVALTRDGLSQIYIVSAAGGS--- 287
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
+++++T P IDT PS++P G I F+S+R + Y DG RR+ G
Sbjct: 288 NMKRVTRSPGIDTEPSFTPDGRSIIFTSDRSGGPQI-----YQTGLDGGDARRLTFNG 340
Score = 38.9 bits (89), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 69/176 (39%), Gaps = 45/176 (25%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVN------GEFNGDIRQLTDGPWIDTMPSWSPK 494
PS SPDG L + S SG ++V F G+ ++ P WSP
Sbjct: 213 PSWSPDGSKLAYVSFESGKPVVYVHTLATSARVPVANFKGN----------NSAPGWSPD 262
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKP-DGSGLRRIHVAGPEGSGDVDRERINHVCFSADG 553
G +A + R + Y++ GS ++R+ S +D E F+ DG
Sbjct: 263 GTQLAVALTRDGLSQI-----YIVSAAGGSNMKRVTR-----SPGIDTE----PSFTPDG 308
Query: 554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
++FT++ P +Y LDG RRLT+NG N +P P
Sbjct: 309 RSIIFTSDRSG-------GPQ-------IYQTGLDGGDARRLTFNGGYNISPRISP 350
>gi|332528330|ref|ZP_08404330.1| translocation protein TolB [Hylemonella gracilis ATCC 19624]
gi|332042201|gb|EGI78527.1| translocation protein TolB [Hylemonella gracilis ATCC 19624]
Length = 433
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 95/244 (38%), Gaps = 50/244 (20%)
Query: 379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN 438
+WSP + + Y S F+S R V I E+ + L G+N
Sbjct: 185 TWSPDGRQLAYVS----FESRRPVVYI---------------HEVSTGRRRLVASFRGSN 225
Query: 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
+ P+ SPDG+FL R G L+ LD N + +LT IDT P++S G I
Sbjct: 226 SAPAWSPDGRFLAVTLSRDGGSQLYTLDLNN--LAAEPLRLTRSNGIDTEPTYSADGRFI 283
Query: 499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLF 558
F S+R + Y + G R+ G SADG WL +
Sbjct: 284 YFVSDRGGSPQI-----YRLPAKGGNPERVTFTGTYNISP---------ALSADGRWLAY 329
Query: 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKL 618
+ + +F+ L+V++L + LT N + P++ P ++L L
Sbjct: 330 ISRIN----------GEFK----LHVMELASGAVTMLT-NTVSDENPSFAPNSRLLLYAT 374
Query: 619 RLED 622
+ D
Sbjct: 375 KQND 378
>gi|296117355|ref|ZP_06835945.1| translocation protein TolB [Gluconacetobacter hansenii ATCC 23769]
gi|295976121|gb|EFG82909.1| translocation protein TolB [Gluconacetobacter hansenii ATCC 23769]
Length = 457
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 9/86 (10%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG +VF S R G L+V+ A GD ++++ G P WSP+GDLIAF
Sbjct: 314 PCYSPDGSQIVFNSDRGGSPQLYVMPAT----GGDAKRISYGHGHYGSPVWSPRGDLIAF 369
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLR 526
S + +FSL V+ PDG+G R
Sbjct: 370 SRIANG-----SFSLGVMAPDGTGER 390
>gi|83312310|ref|YP_422574.1| translocation protein TolB [Magnetospirillum magneticum AMB-1]
gi|118574583|sp|Q2W2B0.1|TOLB_MAGSA RecName: Full=Protein TolB; Flags: Precursor
gi|82947151|dbj|BAE52015.1| Periplasmic component of the Tol biopolymer transport system
[Magnetospirillum magneticum AMB-1]
Length = 447
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 75/173 (43%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG +VF +G+ ++ ++ + + RQLT P IDT PS+SP G I F
Sbjct: 259 PRFSPDGNKVVFSMAENGNTEIYEMNLLTRQ----KRQLTMNPAIDTAPSYSPDGQQIVF 314
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + Y + DGS +RI G G R +S G+ + FT
Sbjct: 315 ESDRGGGQQI-----YTMSADGSNPQRISF----GDG-----RYGTPVWSPRGDLIAFTK 360
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + V++ DGSG RL G+ P W P ++
Sbjct: 361 QKGG----------QFF----IGVMRTDGSG-ERLLAEGFLVEGPTWAPNGRV 398
Score = 38.9 bits (89), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 73/178 (41%), Gaps = 19/178 (10%)
Query: 35 HEHR-LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFH 93
HR LTDG+ + +F + I ++S G PR+Y + + E L + P F
Sbjct: 200 ENHRFLTDGSELVLTPRFSPSARE-ITYLSYFKGVPRVYIFNLDTGRRESLGNFPGMTFA 258
Query: 94 DRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKF 153
R NK+ F A +I Y +L + +LT +D +PS S G+
Sbjct: 259 PRFSPDGNKVVFSMAENGNTEI-------YEMNLLTRQKRQLTMNPAIDTAPSYSPDGQQ 311
Query: 154 IAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWS--GDSTIYFHRQ 209
I S R + + ++ D S+P + R G P WS GD I F +Q
Sbjct: 312 IVFES--DRGGGQQIYTMSAD-----GSNPQRISFGDGRYGTPVWSPRGD-LIAFTKQ 361
>gi|344173935|emb|CCA89122.1| protein tolB, component of the tol-pal system [Ralstonia syzygii
R24]
Length = 433
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 113/289 (39%), Gaps = 74/289 (25%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG+ + L + SWSP V Y S F+S + V +
Sbjct: 181 LQISDSDGANPQIALTSNEPIISPSWSPDGTKVAYVS----FESRKPVVYV--------- 227
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++ + + + GNN+ P+ SPDG+ + R G+ +++ VN + +G
Sbjct: 228 ------HDLVAGRRTVISNQKGNNSAPAWSPDGRRVAVALSRDGNTQIYL---VNADGSG 278
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-- 532
+R+LT IDT PS+SP G I F+S+R + + + V D +R+ G
Sbjct: 279 -LRRLTRSSAIDTEPSFSPDGRSIYFTSDRGGAPQI--YRMPVEGEDAGSAQRVTFKGGY 335
Query: 533 -------PEG---------------------SGDV----DRERINHVCFSADGEWLLFTA 560
P+G +GDV D F+A+G+++L+
Sbjct: 336 NTSPRMSPDGKLLAYISRVGGAFKLYVQDLSNGDVTGLTDTAYDESPSFAANGKFILYAT 395
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+G L V DG + L+ E PAW P
Sbjct: 396 RVGGRSV--------------LAAVSTDGRTRQILSLQAGEVREPAWGP 430
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 72/173 (41%), Gaps = 22/173 (12%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIY 389
N S P++SPDG + + N I + +DGS L + S+SP + + +
Sbjct: 244 NNSAPAWSPDGRRVAVALSRDGNTQIYLVNADGSGLRRLTRSSAIDTEPSFSPDGRSIYF 303
Query: 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF 449
TS QI R+ + + + R + G N P SPDGK
Sbjct: 304 TS------DRGGAPQIYRMPVEGEDAGSAQRVTF----------KGGYNTSPRMSPDGKL 347
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
L + S G L+V D NG+ G LTD + D PS++ G I +++
Sbjct: 348 LAYISRVGGAFKLYVQDLSNGDVTG----LTDTAY-DESPSFAANGKFILYAT 395
>gi|452963078|gb|EME68164.1| translocation protein TolB [Magnetospirillum sp. SO-1]
Length = 447
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 76/173 (43%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG ++F SG+ ++ ++ + + RQLT P I+T PS+SP G I F
Sbjct: 259 PRFSPDGNKVIFSMAESGNTEIYEMNLLTRQ----KRQLTYSPAIETAPSYSPDGQQIVF 314
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + Y++ DGS +RI G G R +S G+ + FT
Sbjct: 315 ESDRGGGQQI-----YIMGADGSNQQRISF----GDG-----RYATPVWSPRGDLIAFTK 360
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + V++ DGSG RL G+ P W P ++
Sbjct: 361 QKGG----------QFF----IGVMRTDGSG-ERLLAEGFLVEGPTWAPNGRV 398
>gi|120612059|ref|YP_971737.1| translocation protein TolB [Acidovorax citrulli AAC00-1]
gi|120590523|gb|ABM33963.1| TolB, N-terminal domain protein [Acidovorax citrulli AAC00-1]
Length = 438
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 106/272 (38%), Gaps = 44/272 (16%)
Query: 298 YHRFRGESTEGQS---TIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA 354
+ RGE GQS T L VA + + +L G FS I +
Sbjct: 130 WETVRGEDKGGQSFVVTQADLRLVAHRIADYVYEKLTGQRGIFSTR---IAYVTKAGSRY 186
Query: 355 GIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD 413
+ +A +DG + + + +WSP+ + Y S F+S + V + VS
Sbjct: 187 SLWVADADGENAQSALSSPEPIISPAWSPSGTQLAYVS----FESRKPVVYVHDVS---- 238
Query: 414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
R + + + G+N+ P+ SPDG+ L R G L+ +DA NG
Sbjct: 239 ----TGRRRLIANFR-------GSNSAPAWSPDGRTLAVTLSRDGSSQLYTIDA-NG--- 283
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP 533
G+ R+L IDT P++S G I F S+R A +Y + G R+ G
Sbjct: 284 GEPRRLMQSSGIDTEPTYSSDGRSIYFVSDRGG-----APQIYRVPATGGSAERVTFTGT 338
Query: 534 EGSGDVDRERINHVCFSADGEWLLFTANLGAV 565
S DG+WL + + +G
Sbjct: 339 YNISP---------SISPDGKWLAYISRVGGA 361
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 31/192 (16%)
Query: 328 LRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHV 387
R + S P++SPDG + + ++ + ++G + L++ S +
Sbjct: 248 FRGSNSAPAWSPDGRTLAVTLSRDGSSQLYTIDANGGEPRRLMQS--------SGIDTEP 299
Query: 388 IYTSTGP--IFQSERATV-QIARVSFQLDPSDDNNREEIPCDVKILTKEETGN-NAFPSC 443
Y+S G F S+R QI RV P+ + E + TG N PS
Sbjct: 300 TYSSDGRSIYFVSDRGGAPQIYRV-----PATGGSAERVTF---------TGTYNISPSI 345
Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503
SPDGK+L + S G L V+D +G + +TD D PS++P G LI +++
Sbjct: 346 SPDGKWLAYISRVGGAFKLHVMDLTSGS----VTAITD-TTADESPSFAPNGRLIVYATQ 400
Query: 504 RHNPDNVEAFSL 515
+ + + +L
Sbjct: 401 QQGREALMTTTL 412
>gi|28198796|ref|NP_779110.1| translocation protein TolB [Xylella fastidiosa Temecula1]
gi|386085002|ref|YP_006001284.1| translocation protein TolB [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|32699695|sp|Q87CZ5.1|TOLB_XYLFT RecName: Full=Protein TolB; Flags: Precursor
gi|28056887|gb|AAO28759.1| TolB protein precursor [Xylella fastidiosa Temecula1]
gi|307579949|gb|ADN63918.1| translocation protein TolB [Xylella fastidiosa subsp. fastidiosa
GB514]
Length = 439
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 107/281 (38%), Gaps = 57/281 (20%)
Query: 355 GIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD 413
+ +A SDG T+++ + WS K + Y S F+ +++ I
Sbjct: 185 ALMVADSDGYNPQTIVRSAEPLLSPDWSSDGKKLAYVS----FEKGGSSIYI-------- 232
Query: 414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
++I + L G NA PS +PDG + RSG+ ++V+D V+ +
Sbjct: 233 -------QDIATGSRELVSSFRGINAAPSFAPDGHRIALSLSRSGNPEIYVMDLVSKQ-- 283
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG- 532
+ QLT+ IDT P WS G I F+S+R + Y + G R+ G
Sbjct: 284 --LIQLTNSFGIDTEPVWSSDGKFIYFTSDRGGRPQI-----YKVASVGGAATRVTFQGN 336
Query: 533 ----------------PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQF 576
+GSG+V R + + G + T + G++ P PN
Sbjct: 337 YNASASVSYDDKKIVVAQGSGNVYRIAMMD---QSSGSTVWNTLSTGSLDESPSFAPNAS 393
Query: 577 QPY--------GDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G LY V D +RL + PAW P
Sbjct: 394 MVLYAAREGGRGVLYAVSADARVRQRLVSVDSDVREPAWGP 434
>gi|145588463|ref|YP_001155060.1| translocation protein TolB [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145046869|gb|ABP33496.1| TolB, N-terminal domain protein [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 436
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 42/191 (21%)
Query: 379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN 438
SWSP K V Y S F+ + + + E+ +I + GNN
Sbjct: 208 SWSPDGKKVAYVS----FEDRKPVIYV---------------HELATGRRISLSNQKGNN 248
Query: 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
+ P+ SPDGK L + G+ ++ +N + +G + +LT G IDT P +S G I
Sbjct: 249 SAPAWSPDGKKLAVSLSKDGNTQIY---GINADGSG-LHRLTRGNTIDTEPQYSADGRYI 304
Query: 499 AFSSNR-HNPDNVEAFSLYVIKPDG---SGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
F+S+R NP +Y + +G G +R+ G V RI S DG+
Sbjct: 305 YFTSDRGGNPQ------IYRMSAEGEQVEGAKRVTFK----QGFVTSPRI-----SPDGK 349
Query: 555 WLLFTANLGAV 565
+L + AN+G
Sbjct: 350 YLAYIANVGGA 360
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 22/173 (12%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYT 390
N S P++SPDG + + + N I +DGS L + T + IY
Sbjct: 247 NNSAPAWSPDGKKLAVSLSKDGNTQIYGINADGSGLHRLTRGNTIDTEPQYSADGRYIY- 305
Query: 391 STGPIFQSERA-TVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF 449
F S+R QI R+S + E++ ++ K+ G P SPDGK+
Sbjct: 306 -----FTSDRGGNPQIYRMSAE--------GEQVEGAKRVTFKQ--GFVTSPRISPDGKY 350
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
L + + G L++L+ GD + LTDG D PS++ G + +S+
Sbjct: 351 LAYIANVGGAYRLYILNLA----TGDSQALTDGTS-DESPSFAANGRYVLYST 398
>gi|398780928|ref|ZP_10545147.1| hypothetical protein SU9_02000 [Streptomyces auratus AGR0001]
gi|396997811|gb|EJJ08756.1| hypothetical protein SU9_02000 [Streptomyces auratus AGR0001]
Length = 1066
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 68/138 (49%), Gaps = 11/138 (7%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ L + R G+ +L+ L G +RQLTDGPW D P+WSP G +AF
Sbjct: 105 PVHSPDGRTLALCAYRGGNFHLWTL----GTDGSGLRQLTDGPWDDRGPAWSPDGTRLAF 160
Query: 501 SSNRHNPDNVEA--FSLYVIKPDGSGLRRI-HVAGPEGSGDVDRERINHVCFSADGEWLL 557
+S R D V + L+V++ L R+ + G +G C+S DG L+
Sbjct: 161 ASERGG-DAVAGSPYRLWVLEVRTGRLTRVTGLPGQDGPHQDGAWEDFDPCWSPDGARLV 219
Query: 558 FTANL---GAVMAEPVSW 572
F A+++ V+W
Sbjct: 220 FVRGQVAGAALVSRTVAW 237
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 120/304 (39%), Gaps = 53/304 (17%)
Query: 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK--RWTLIKDRTAFYN--SWSPTEKHVIY 389
P+ SPDG + F LN+ + IA + GS R + D T + + SWS + ++Y
Sbjct: 365 LPALSPDGRRVAFG---ALNS-LWIAPTSGSGAPRRVVRADATRYVSAPSWSRDGRALLY 420
Query: 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF 449
T +R + R R ++ + T TG P+ SPDG
Sbjct: 421 TD-------DRDGLFAVR------------RRDLASGTE--TVLATGGRVLPALSPDGGR 459
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS-NRHNPD 508
L + NL V +G L G + PSWSP G +A+ NR N
Sbjct: 460 L---AALDMSGNLVVRTLPDGTEKVLAAPLGAG-GLPGRPSWSPDGRYLAYCDRNRLNRR 515
Query: 509 NVEAFSLY-VIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA 567
E +++ V+ + RR VA E DR V +S DG W+ AV+A
Sbjct: 516 FREGYNIIRVLDAETGKERRYAVA--EHVSIADRHDSGPV-WSPDGRWM-------AVIA 565
Query: 568 EPVSWPNQFQPYG--DLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIG 625
E W +P G D +L +W+G ++GT + L GKLRL G
Sbjct: 566 ESALWVLPVRPDGTPDGTPRRLTDESADHPSWSG-DSGTLLY-----LSAGKLRLTGVSG 619
Query: 626 DKLR 629
R
Sbjct: 620 GAAR 623
>gi|304393324|ref|ZP_07375252.1| Tol-Pal system beta propeller repeat protein TolB [Ahrensia sp.
R2A130]
gi|303294331|gb|EFL88703.1| Tol-Pal system beta propeller repeat protein TolB [Ahrensia sp.
R2A130]
Length = 444
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 75/173 (43%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ +V + G+ N++ +D + +LT+ P IDT PS+SP G I F
Sbjct: 260 PRFSPDGQRIVMSLQQDGNANIYSMDLRSRSTT----RLTNTPAIDTSPSFSPDGRRIVF 315
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LYV+ DGS RI G+G + +S G+ + FT
Sbjct: 316 ESDRGGRQQ-----LYVMGADGSSPTRISF----GTGSY-----STPVWSPRGDLIAFTK 361
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + V++ DG G R LT GY N P W P +L
Sbjct: 362 RSGGNFL--------------IGVMRPDGKGERILT-EGYHNEGPTWAPNGRL 399
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 34 FHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFH 93
F+ LT+G+ + +F + Q I ++S G PR+Y + + + E++ + P F
Sbjct: 201 FNNRMLTNGSDLVLTPRFSPSR-QEITYMSFAGGEPRVYLLQIETGQREVVGNFPSMTFS 259
Query: 94 DRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKF 153
R + + + +S + + + +YS DL++ TRLT +D SPS S G+
Sbjct: 260 PR-FSPDGQRIVMSLQQDGN------ANIYSMDLRSRSTTRLTNTPAIDTSPSFSPDGRR 312
Query: 154 IAVAS 158
I S
Sbjct: 313 IVFES 317
>gi|307944545|ref|ZP_07659885.1| Tol-Pal system beta propeller repeat protein TolB [Roseibium sp.
TrichSKD4]
gi|307772294|gb|EFO31515.1| Tol-Pal system beta propeller repeat protein TolB [Roseibium sp.
TrichSKD4]
Length = 449
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 13/97 (13%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG +VF S R G + L+V+ +G+ +++ GP + P WSP+GDLIAF
Sbjct: 309 PSYSPDGSRIVFESDRGGTQQLYVMSG----NDGNPLRISFGPGRYSTPVWSPRGDLIAF 364
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGP 533
+ F + V+KPDG G R + H GP
Sbjct: 365 TKMHQG-----RFMIGVMKPDGKGERILTEGYHNEGP 396
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 73/173 (42%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ +V + G+ N+F +D + +LT+ IDT PS+SP G I F
Sbjct: 265 PRFSPDGQSVVMSLQQGGNANIFKMDLRSRRTT----RLTNTAAIDTSPSYSPDGSRIVF 320
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LYV+ + RI GP R + +S G+ + FT
Sbjct: 321 ESDRGGTQQ-----LYVMSGNDGNPLRISF-GP--------GRYSTPVWSPRGDLIAFT- 365
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
Q + V+K DG G R LT GY N PAW P ++
Sbjct: 366 -------------KMHQGRFMIGVMKPDGKGERILT-EGYHNEGPAWSPNGRV 404
>gi|441498467|ref|ZP_20980663.1| tolB protein precursor [Fulvivirga imtechensis AK7]
gi|441437741|gb|ELR71089.1| tolB protein precursor [Fulvivirga imtechensis AK7]
Length = 369
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 30/148 (20%)
Query: 476 IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPE 534
++QLT+ P D + SP+GD I F+S R LY + DGS +R++ A G +
Sbjct: 168 LQQLTNEPGYDAEATVSPRGDKIVFTSLRSGD-----LELYTMNIDGSDVRQVTNALGYD 222
Query: 535 GSGDVDRERINHVCFSADGEWLLFTAN----------LGAVMAEPVSWPNQFQPYGDLYV 584
G FS DG L+F A+ ++AE + P Q + LYV
Sbjct: 223 GGA----------FFSPDGTKLIFRASRPKTEEEIRVYKELLAEGLVMPTQME----LYV 268
Query: 585 VKLDGSGLRRLTWNGYENGTPAWHPGNQ 612
+DGS L+++T G N P +HP +
Sbjct: 269 CNVDGSDLKQITNLGKANWCPFFHPSGE 296
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 42/193 (21%)
Query: 434 ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
E G +A + SP G +VF S RSG L+ ++ ++G D+RQ+T+ D +SP
Sbjct: 174 EPGYDAEATVSPRGDKIVFTSLRSGDLELYTMN-IDG---SDVRQVTNALGYDGGAFFSP 229
Query: 494 KGDLIAFSSNR-HNPDNVEAFS--------------LYVIKPDGSGLRRIHVAGPEGSGD 538
G + F ++R + + + LYV DGS L++I G
Sbjct: 230 DGTKLIFRASRPKTEEEIRVYKELLAEGLVMPTQMELYVCNVDGSDLKQITNLGKA---- 285
Query: 539 VDRERINHVC--FSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596
+ C F GE ++F +N P +LY++ LDG+GL ++T
Sbjct: 286 -------NWCPFFHPSGEKVIFASNHETERGFPF----------NLYMINLDGTGLEQIT 328
Query: 597 WNGYENGTPAWHP 609
+ + P + P
Sbjct: 329 HDDTFDAFPMFSP 341
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 26/134 (19%)
Query: 444 SPDGKFLVFRSGRSG-------HKNLFV--------LDAVNGEFNG-DIRQLTDGPWIDT 487
SPDG L+FR+ R +K L ++ +G D++Q+T+ +
Sbjct: 228 SPDGTKLIFRASRPKTEEEIRVYKELLAEGLVMPTQMELYVCNVDGSDLKQITNLGKANW 287
Query: 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV 547
P + P G+ + F+SN H + F+LY+I DG+GL +I D
Sbjct: 288 CPFFHPSGEKVIFASN-HETERGFPFNLYMINLDGTGLEQI---------THDDTFDAFP 337
Query: 548 CFSADGEWLLFTAN 561
FS DG++L+F++N
Sbjct: 338 MFSPDGKYLVFSSN 351
>gi|409399650|ref|ZP_11249916.1| TolB domain-containing protein [Acidocella sp. MX-AZ02]
gi|409131183|gb|EKN00896.1| TolB domain-containing protein [Acidocella sp. MX-AZ02]
Length = 451
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 9/91 (9%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497
N P SPDG +VF S R G++ LFV++A +G +++++ GP P WSP+GDL
Sbjct: 307 NVTPCYSPDGSQIVFNSDRDGNQQLFVMNA-DGS---GVKRISFGPGQYAEPVWSPRGDL 362
Query: 498 IAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
IA++ FS+ V+ PDG+G R I
Sbjct: 363 IAYTFWGSG-----GFSIGVMAPDGTGERII 388
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 36/163 (22%)
Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP 507
F+ +R G + +F L + G ++T GP +SP G+ + S +R+
Sbjct: 231 AFVSYRGGANPRVYMFNLQTGATQLVGGFGEMTIGP------RFSPDGNSLLMSVSRNG- 283
Query: 508 DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV-CFSADGEWLLFTANLGAVM 566
G+ + + ++G + D IN C+S DG ++F ++
Sbjct: 284 --------------GAAIVKTSLSGGGATELTDSSSINVTPCYSPDGSQIVFNSDRDG-- 327
Query: 567 AEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
NQ L+V+ DGSG++R+++ + P W P
Sbjct: 328 -------NQ-----QLFVMNADGSGVKRISFGPGQYAEPVWSP 358
>gi|300692237|ref|YP_003753232.1| protein tolB, component of the tol-pal system [Ralstonia
solanacearum PSI07]
gi|299079297|emb|CBJ51969.2| protein tolB, component of the tol-pal system [Ralstonia
solanacearum PSI07]
Length = 433
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 113/289 (39%), Gaps = 74/289 (25%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG+ + L + SWSP V Y S F+S + V +
Sbjct: 181 LQISDSDGANPQIALTSNEPIISPSWSPDGTKVAYVS----FESRKPVVYV--------- 227
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++ + + + GNN+ P+ SPDG+ + R G+ +++ VN + +G
Sbjct: 228 ------HDLVAGRRTVISNQKGNNSAPAWSPDGRRVAVALSRDGNTQIYL---VNADGSG 278
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-- 532
+R+LT IDT PS+SP G I F+S+R + + + V D +R+ G
Sbjct: 279 -LRRLTRSSAIDTEPSFSPDGRSIYFTSDRGGAPQI--YRMPVEGEDAGSAQRVTFKGSY 335
Query: 533 -------PEG---------------------SGDV----DRERINHVCFSADGEWLLFTA 560
P+G +GDV D F+A+G+++L+
Sbjct: 336 NTSPRMSPDGKLLAYISRVGGAFKLYVQDLSNGDVTGLTDTAYDESPSFAANGKFILYAT 395
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+G L V DG + L+ E PAW P
Sbjct: 396 RVGGRSV--------------LAAVSTDGRTRQILSLQAGEVREPAWGP 430
Score = 46.6 bits (109), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 70/173 (40%), Gaps = 22/173 (12%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIY 389
N S P++SPDG + + N I + +DGS L + S+SP + + +
Sbjct: 244 NNSAPAWSPDGRRVAVALSRDGNTQIYLVNADGSGLRRLTRSSAIDTEPSFSPDGRSIYF 303
Query: 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF 449
TS QI R+ + + + R N P SPDGK
Sbjct: 304 TS------DRGGAPQIYRMPVEGEDAGSAQRVTFKGSY----------NTSPRMSPDGKL 347
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
L + S G L+V D NG+ G LTD + D PS++ G I +++
Sbjct: 348 LAYISRVGGAFKLYVQDLSNGDVTG----LTDTAY-DESPSFAANGKFILYAT 395
>gi|352103172|ref|ZP_08959700.1| translocation protein TolB [Halomonas sp. HAL1]
gi|350599577|gb|EHA15662.1| translocation protein TolB [Halomonas sp. HAL1]
Length = 428
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 106/276 (38%), Gaps = 49/276 (17%)
Query: 355 GIKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD 413
G+ +A +DG + L D +WSP + Y S F++ER + I
Sbjct: 178 GLYVADADGRRSEQVLTSDEPIMSPAWSPDGTKLAYVS----FETERPAIYI-------- 225
Query: 414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
+++ +I G N P+ SPDG+ + + G ++++D N
Sbjct: 226 -------QDVATGQRIKATSFDGINGAPAWSPDGRRIAMSLSKDGQPEIYIMDVANRS-- 276
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG- 532
+ ++T+ IDT P+W+P G + F+S+R LY G R+ G
Sbjct: 277 --VERITNNNSIDTEPAWAPDGRSLLFTSDRSG-----GPQLYQYAMGGGEAERLTFTGN 329
Query: 533 --PEGSGDVDRERINHVCFSADGEWLL---FTANLGAVMAE------PVSWPN------- 574
G D E+I + S++G + + N V++E P PN
Sbjct: 330 YNARGRYSPDGEQIFLIHRSSNGYQVAKQDLSGNRLVVLSESTRDESPSVAPNGTMVIFA 389
Query: 575 -QFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
Q G L V DG RL + PAW P
Sbjct: 390 TQQGNSGVLSAVSADGRSSFRLPSAQGDVRDPAWSP 425
>gi|406707066|ref|YP_006757418.1| tol-pal system beta propeller repeat protein TolB [alpha
proteobacterium HIMB59]
gi|406652842|gb|AFS48241.1| tol-pal system beta propeller repeat protein TolB [alpha
proteobacterium HIMB59]
Length = 438
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 434 ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
++G + PS SPDG+ +VF S RSG L+++D + +I++++ G + P WSP
Sbjct: 288 DSGIDTSPSYSPDGEKIVFNSDRSGSPQLYIMD----KDGSNIKRISKGKGVYGNPVWSP 343
Query: 494 KGDLIAFSSNRH 505
+GDLIAF NR
Sbjct: 344 RGDLIAFVKNRK 355
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 11/90 (12%)
Query: 441 PSCSPDGKFLV--FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
P SPD K +V F ++ + ++ +D +N I +LT+ IDT PS+SP G+ I
Sbjct: 249 PRFSPDSKSVVMSFSDSKTANSEIYSMD-LNTR---SITRLTNDSGIDTSPSYSPDGEKI 304
Query: 499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
F+S+R + LY++ DGS ++RI
Sbjct: 305 VFNSDRSG-----SPQLYIMDKDGSNIKRI 329
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Query: 39 LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDR--P 96
LTDG ++ +F +QTI ++ ++ PR+Y + + E++ P F R P
Sbjct: 195 LTDGKNLVLTPRFAP-NNQTITYMEYKNNLPRVYIYDLKTGEREIVGDFPGMTFAPRFSP 253
Query: 97 VARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAV 156
+++ + F + + S +YS DL TRLT +D SPS S G+ I
Sbjct: 254 DSKSVVMSFSDSK-------TANSEIYSMDLNTRSITRLTNDSGIDTSPSYSPDGEKIVF 306
Query: 157 ASYES 161
S S
Sbjct: 307 NSDRS 311
>gi|254253146|ref|ZP_04946464.1| TolB [Burkholderia dolosa AUO158]
gi|124895755|gb|EAY69635.1| TolB [Burkholderia dolosa AUO158]
Length = 432
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 24/150 (16%)
Query: 356 IKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG + R L +WSP+ V Y S F+ ++ V I
Sbjct: 179 LQISDSDGQNARIALSSTEPIISPAWSPSGTKVAYVS----FERKKPIVYI--------- 225
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++P + + ++ GNN+ P+ SPDG L +G+ ++ ++A NG G
Sbjct: 226 ------HDLPTGRRYMVSDQKGNNSAPAWSPDGNTLAVALSLTGNTQIYSVNA-NG---G 275
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
+R+LT IDT P +SP G I F+S+R
Sbjct: 276 GLRRLTQSNSIDTEPFYSPDGRWIYFTSDR 305
>gi|417371800|ref|ZP_12142272.1| TolB protein [Salmonella enterica subsp. enterica serovar Inverness
str. R8-3668]
gi|417453671|ref|ZP_12163351.1| TolB protein [Salmonella enterica subsp. enterica serovar
Montevideo str. S5-403]
gi|417536384|ref|ZP_12189551.1| TolB protein [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
gi|353607112|gb|EHC61129.1| TolB protein [Salmonella enterica subsp. enterica serovar Inverness
str. R8-3668]
gi|353635463|gb|EHC81761.1| TolB protein [Salmonella enterica subsp. enterica serovar
Montevideo str. S5-403]
gi|353670438|gb|EHD07047.1| TolB protein [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
Length = 295
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 110 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDSQ 165
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 166 TLAFTSDQAGRPQV-----YKMNINGGAAQRITW---EGSQNQDAD------VSSDGKFM 211
Query: 557 LFTAN 561
+ ++
Sbjct: 212 VMVSS 216
Score = 43.1 bits (100), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 70 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGTKLAF 125
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I R + D + L FT+
Sbjct: 126 ALSKTG-----SLNLYVMDLASGQIRQITDG---------RSNNTEPTWFPDSQTLAFTS 171
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y + ++G +R+TW G +N
Sbjct: 172 DQAG------------RP--QVYKMNINGGAAQRITWEGSQN 199
>gi|56416532|ref|YP_153606.1| translocation protein TolB [Anaplasma marginale str. St. Maries]
gi|254994752|ref|ZP_05276942.1| translocation protein TolB [Anaplasma marginale str. Mississippi]
gi|255004004|ref|ZP_05278805.1| translocation protein TolB [Anaplasma marginale str. Virginia]
gi|67461908|sp|Q5PBH8.1|TOLB_ANAMM RecName: Full=Protein TolB; Flags: Precursor
gi|56387764|gb|AAV86351.1| TolB protein precursor [Anaplasma marginale str. St. Maries]
Length = 441
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 78/180 (43%), Gaps = 33/180 (18%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G N+ P SPDG+ ++ G N++ +D +G+ +LT+ I+T S+SP
Sbjct: 248 GVNSSPRFSPDGRHVLLSESAQGSTNIYSIDLKSGKST----RLTNDRSINTSASYSPDK 303
Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW 555
I F+S+R LYV+ DG+ RRI G G +S G+W
Sbjct: 304 KSIVFNSDRSGRPQ-----LYVMNADGTNQRRIS----SGKGGYSAP-----AWSPRGDW 349
Query: 556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDL 615
+ FT G + V+K DGSG RL GY +P+W P ++ L
Sbjct: 350 IAFTKTEGKSF--------------HVGVMKPDGSG-ERLLAKGYMVDSPSWSPNGRVIL 394
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 53/209 (25%)
Query: 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNS------------- 379
S P FSPD +V+ + AKS GS ++ D Y++
Sbjct: 207 STPRFSPDARNLVY---------MSYAKSGGS---VVLHDLETGYSTALGGVRGVNSSPR 254
Query: 380 WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNA 439
+SP +HV+ + +S + + I + + S LT + + N +
Sbjct: 255 FSPDGRHVLLS------ESAQGSTNIYSIDLKSGKSTR------------LTNDRSINTS 296
Query: 440 FPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
S SPD K +VF S RSG L+V++A +G + R+++ G + P+WSP+GD IA
Sbjct: 297 -ASYSPDKKSIVFNSDRSGRPQLYVMNA-DGT---NQRRISSGKGGYSAPAWSPRGDWIA 351
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
F+ ++F + V+KPDGSG R +
Sbjct: 352 FTKTEG-----KSFHVGVMKPDGSGERLL 375
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 95/229 (41%), Gaps = 41/229 (17%)
Query: 286 NPFVSANSEFIGYHRFRGES---------TEGQSTIPH-LEPVASPVKELRMLRLNGSFP 335
N +++ EF+ RF ++ G S + H LE S L +R S P
Sbjct: 196 NIYITGRGEFVSTPRFSPDARNLVYMSYAKSGGSVVLHDLETGYSTA--LGGVRGVNSSP 253
Query: 336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGP 394
FSPDG ++ + + + I K L DR+ + S+SP +K ++
Sbjct: 254 RFSPDGRHVLLSESAQGSTNIYSIDLKSGKSTRLTNDRSINTSASYSPDKKSIV------ 307
Query: 395 IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRS 454
F S+R+ R + +D N+ I G + P+ SP G ++ F
Sbjct: 308 -FNSDRS----GRPQLYVMNADGTNQRRISSG--------KGGYSAPAWSPRGDWIAFTK 354
Query: 455 --GRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFS 501
G+S H + D +GE R L G +D+ PSWSP G +I F+
Sbjct: 355 TEGKSFHVGVMKPDG-SGE-----RLLAKGYMVDS-PSWSPNGRVILFT 396
>gi|417508061|ref|ZP_12174520.1| TolB protein, partial [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|353649861|gb|EHC92380.1| TolB protein, partial [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
Length = 309
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 124 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDSQ 179
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 180 TLAFTSDQAGRPQV-----YKMNINGGAAQRITW---EGSQNQDAD------VSSDGKFM 225
Query: 557 LFTAN 561
+ ++
Sbjct: 226 VMVSS 230
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 84 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGTKLAF 139
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I R + D + L FT+
Sbjct: 140 ALSKTG-----SLNLYVMDLASGQIRQITDG---------RSNNTEPTWFPDSQTLAFTS 185
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y + ++G +R+TW G +N
Sbjct: 186 DQAG------------RP--QVYKMNINGGAAQRITWEGSQN 213
>gi|292487661|ref|YP_003530534.1| protein TolB [Erwinia amylovora CFBP1430]
gi|292898898|ref|YP_003538267.1| TolB colicin import protein [Erwinia amylovora ATCC 49946]
gi|428784596|ref|ZP_19002087.1| Protein tolB precursor [Erwinia amylovora ACW56400]
gi|291198746|emb|CBJ45855.1| TolB colicin import protein [Erwinia amylovora ATCC 49946]
gi|291553081|emb|CBA20126.1| Protein tolB precursor [Erwinia amylovora CFBP1430]
gi|426276158|gb|EKV53885.1| Protein tolB precursor [Erwinia amylovora ACW56400]
Length = 430
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N PS SPDG L F ++G NL+V+D +G+ IRQ+TDG + T P+W P
Sbjct: 245 HNGAPSFSPDGSKLAFALSKTGSLNLYVMDVGSGQ----IRQITDGRYNSTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE-W 555
+A++S++ + Y I +G +RI G + D D SADG+
Sbjct: 301 SLAYTSDQAGRPQI-----YKIGVNGGTAQRITWEGAQNQ-DAD--------VSADGKSM 346
Query: 556 LLFTANLGA 564
++ + N GA
Sbjct: 347 VMISTNSGA 355
Score = 42.0 bits (97), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG + + + SG L + NG IRQ+ P + PS+SP G +AF
Sbjct: 205 PAWSPDGSKVAYVTFESGKSALVIQTLANGA----IRQVASFPRHNGAPSFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I +G R + D + L +T+
Sbjct: 261 ALSKTG-----SLNLYVMDVGSGQIRQIT----DG-----RYNSTEPTWFPDSQSLAYTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y + ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QIYKIGVNGGTAQRITWEGAQN 334
>gi|410478708|ref|YP_006766345.1| Tol biopolymer transport system periplasmic protein [Leptospirillum
ferriphilum ML-04]
gi|424868629|ref|ZP_18292368.1| Putative TolB protein [Leptospirillum sp. Group II 'C75']
gi|124514218|gb|EAY55733.1| putative TolB protein [Leptospirillum rubarum]
gi|387221186|gb|EIJ75774.1| Putative TolB protein [Leptospirillum sp. Group II 'C75']
gi|406773960|gb|AFS53385.1| periplasmic component of the Tol biopolymer transport system
[Leptospirillum ferriphilum ML-04]
Length = 447
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 93/212 (43%), Gaps = 46/212 (21%)
Query: 406 ARVSFQLDPSDDNNREEI-PCDVKILTKEET----GNNAFPSCSPDGKFLVFRSGRSGHK 460
A ++ L S + EI D+K+ E NN PS SPDG +VF S R GH
Sbjct: 269 AMLAMALSKSQTSQNTEIYSYDMKVHRFERLTYSHSNNLSPSWSPDGSQIVFVSDRDGHP 328
Query: 461 NLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF--SSNRHNPDNVEAFSLYVI 518
+FV+D+ +G + +++ + + PSWSP+GD IA+ + RH P + +
Sbjct: 329 QIFVMDS-DGS---NEHRISFTGFYNVSPSWSPRGDAIAYVCMNERHRP------KICLT 378
Query: 519 KPDGS-GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQ 577
P G L+ H +G + S D +S DG +LFT Q
Sbjct: 379 TPTGDRSLQLTHGSGQDDSPD----------WSPDGRTILFT----------------HQ 412
Query: 578 PYGDLYVVK--LDGSGLRRLTWNGYENGTPAW 607
G Y+ K LDG+ + RL + TP W
Sbjct: 413 VKGHSYIEKMFLDGTHVHRLGAFPHSVITPVW 444
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 78/192 (40%), Gaps = 41/192 (21%)
Query: 276 LTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRL----- 330
L + PNF S NS + + ++++ E + +K R RL
Sbjct: 258 LNITPNF-------SRNSAMLAMALSKSQTSQNT------EIYSYDMKVHRFERLTYSHS 304
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN---SWSPTEKHV 387
N PS+SPDG IVF D + + I + SDGS + T FYN SWSP +
Sbjct: 305 NNLSPSWSPDGSQIVFVSDRDGHPQIFVMDSDGSNEHRI--SFTGFYNVSPSWSPRGDAI 362
Query: 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
Y + +ER +I + P+ D + + +G + P SPDG
Sbjct: 363 AY-----VCMNERHRPKICLTT----PTGDRSLQ---------LTHGSGQDDSPDWSPDG 404
Query: 448 KFLVFRSGRSGH 459
+ ++F GH
Sbjct: 405 RTILFTHQVKGH 416
>gi|427427980|ref|ZP_18918022.1| tolB protein precursor protein [Caenispirillum salinarum AK4]
gi|425882681|gb|EKV31360.1| tolB protein precursor protein [Caenispirillum salinarum AK4]
Length = 451
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 81/199 (40%), Gaps = 44/199 (22%)
Query: 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI 476
D R+E L E G P SPDG ++ R G+ ++ +D I
Sbjct: 249 DTGRQE-------LLGEFPGMTFAPRFSPDGNKVILSMARDGNSEIYEMDLRTRR----I 297
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS 536
+LT+ P IDT PS+SP G I F+S+R A +YV+ DG +RRI G
Sbjct: 298 TRLTNHPAIDTSPSYSPDGQQITFNSDRGG-----AQQIYVMDADGGNVRRISF----GD 348
Query: 537 GDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLY--VVKLDGSGLRR 594
G R +S G+ + FT G Y V++ DGSG R
Sbjct: 349 G-----RYATPVWSPRGDLIAFTK----------------MKSGQFYIGVMRPDGSGERM 387
Query: 595 LTWNGYENGTPAWHPGNQL 613
L + G P W P ++
Sbjct: 388 LATDYLVEG-PTWAPNGRV 405
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
Query: 37 HR-LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDR 95
HR LTDG+S+ +F Q I F+S +G PR++ + + ELL P F R
Sbjct: 209 HRYLTDGSSLVLTPRF-SPTSQEITFMSYSNGVPRVFLYNIDTGRQELLGEFPGMTFAPR 267
Query: 96 PVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFI 154
NK+ A + S +Y DL+ + TRLT + +D SPS S G+ I
Sbjct: 268 FSPDGNKVILSMARD-------GNSEIYEMDLRTRRITRLTNHPAIDTSPSYSPDGQQI 319
>gi|289804344|ref|ZP_06534973.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
Length = 285
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 100 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDSQ 155
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 156 TLAFTSDQAGRPQV-----YKMNINGGAAQRITW---EGSQNQDAD------VSSDGKFM 201
Query: 557 LFTAN 561
+ ++
Sbjct: 202 VMVSS 206
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 60 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGTKLAF 115
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I R + D + L FT+
Sbjct: 116 ALSKTG-----SLNLYVMDLASGQIRQITDG---------RSNNTEPTWFPDSQTLAFTS 161
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y + ++G +R+TW G +N
Sbjct: 162 DQAG------------RP--QVYKMNINGGAAQRITWEGSQN 189
>gi|436710817|ref|ZP_20518667.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|434991431|gb|ELL82926.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
Length = 217
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 18/124 (14%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497
N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 33 NGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDSQT 88
Query: 498 IAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL 557
+AF+S++ V Y + +G +RI EGS + D + S+DG++++
Sbjct: 89 LAFTSDQAGRPQV-----YKMNINGGAAQRITW---EGSQNQDAD------VSSDGKFMV 134
Query: 558 FTAN 561
++
Sbjct: 135 MVSS 138
>gi|254464281|ref|ZP_05077692.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacterales
bacterium Y4I]
gi|206685189|gb|EDZ45671.1| Tol-Pal system beta propeller repeat protein TolB [Rhodobacterales
bacterium Y4I]
Length = 441
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 33/186 (17%)
Query: 428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT 487
K+L+ + + P +PDG+ +V+ + G+ +LF +D G +LT P I+T
Sbjct: 244 KVLSSGDGTMSFAPRFAPDGRTIVYSQTQGGNTDLFAMDIETGAKT----RLTSAPSIET 299
Query: 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV 547
PS+SP G I F S+R LYV+ G RRI EG R
Sbjct: 300 APSFSPDGSQIVFESDRSGSQQ-----LYVMPAGGGEARRISFG--EG-------RYGTP 345
Query: 548 CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
+S G+ + FT Q + + V++ DGS R LT + + G P W
Sbjct: 346 VWSPRGDMVAFT--------------KQNKGRFHIGVMRTDGSEERLLTASFLDEG-PTW 390
Query: 608 HPGNQL 613
P ++
Sbjct: 391 APNGRV 396
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 13/138 (9%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG +VF S RSG + L+V+ A GE R+++ G P WSP+GD++AF
Sbjct: 301 PSFSPDGSQIVFESDRSGSQQLYVMPAGGGE----ARRISFGEGRYGTPVWSPRGDMVAF 356
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA----GPEGSGDVDRERINHVCFSADGEWL 556
+ N F + V++ DGS R + + GP + + + G L
Sbjct: 357 TKQ-----NKGRFHIGVMRTDGSEERLLTASFLDEGPTWAPNGRVIMFTRESQGSSGRAL 411
Query: 557 LFTANLGAVMAEPVSWPN 574
L++ ++ +PV P+
Sbjct: 412 LYSVDITGRNLKPVKTPD 429
>gi|398805640|ref|ZP_10564607.1| tol-pal system beta propeller repeat protein TolB [Polaromonas sp.
CF318]
gi|398090896|gb|EJL81354.1| tol-pal system beta propeller repeat protein TolB [Polaromonas sp.
CF318]
Length = 429
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 86/209 (41%), Gaps = 38/209 (18%)
Query: 358 IAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD 416
+A SDG + L +WSP + Y S F+S + +
Sbjct: 182 VADSDGEGAQSALTSPEPIISPAWSPNGAQLAYVS----FESRKPVIYA----------- 226
Query: 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI 476
++ + L G+N+ P+ SPDGK LV R G L+ + +NG GD
Sbjct: 227 ----HDVASGKRRLLANFRGSNSAPAWSPDGKQLVATLSRDGGSQLYAI-GLNG---GDP 278
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS 536
++LT IDT P++SP G I F S+R A +Y + P+G R+ GS
Sbjct: 279 KRLTQSSSIDTEPAFSPDGRYIYFVSDRGG-----APQIYRMGPNGGNAERVTFT---GS 330
Query: 537 GDVDRERINHVCFSADGEWLLFTANLGAV 565
++ S DG WL + + +G
Sbjct: 331 YNI------SPAISPDGRWLAYISRVGGA 353
>gi|163796930|ref|ZP_02190886.1| TolB protein [alpha proteobacterium BAL199]
gi|159177677|gb|EDP62228.1| TolB protein [alpha proteobacterium BAL199]
Length = 207
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG ++ R G +++ +D + +LT+ IDT PS+SP G +AF
Sbjct: 19 PRFSPDGNQVIMSLARDGVTDVYRMDLRTRR----VTRLTNSASIDTSPSFSPDGTQVAF 74
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+S+R A LYV+ +G G++RI + + +S G+ + FT
Sbjct: 75 NSDRGG-----AQQLYVMDSNGGGVKRISFG---------QGQYATPVWSPRGDLIAFTK 120
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + V+++DGSG RL +GY P+W P ++
Sbjct: 121 IAGG----------QFH----IGVMRVDGSG-ERLISSGYLVEAPSWAPNGRV 158
>gi|261341330|ref|ZP_05969188.1| Tol-Pal system beta propeller repeat protein TolB [Enterobacter
cancerogenus ATCC 35316]
gi|288316635|gb|EFC55573.1| Tol-Pal system beta propeller repeat protein TolB [Enterobacter
cancerogenus ATCC 35316]
Length = 431
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 246 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDIGSGQ----IRQITDGRSNNTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + SADG+ +
Sbjct: 302 NLAFTSDQAGRPQV-----YKVNINGGAAQRITW---EGSQNQDAD------ISADGKTM 347
Query: 557 LFTANLG 563
+ + G
Sbjct: 348 VMVSTAG 354
Score = 42.7 bits (99), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKLAYVTFESGRSALVIQTLSNGA----VRQVASFPRHNGAPAFSPDGTKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I R + D + L FT+
Sbjct: 262 ALSKTG-----SLNLYVMDIGSGQIRQITDG---------RSNNTEPTWFPDSQNLAFTS 307
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 308 DQAG------------RP--QVYKVNINGGAAQRITWEGSQN 335
>gi|213649746|ref|ZP_03379799.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
Length = 373
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 18/124 (14%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497
N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 189 NGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDSQT 244
Query: 498 IAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL 557
+AF+S++ V Y + +G +RI EGS + D + S+DG++++
Sbjct: 245 LAFTSDQAGRPQV-----YKMNINGGAAQRITW---EGSQNQDAD------VSSDGKFMV 290
Query: 558 FTAN 561
++
Sbjct: 291 MVSS 294
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/272 (20%), Positives = 107/272 (39%), Gaps = 50/272 (18%)
Query: 342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERA 401
GL+ N D N ++ + G+ L ++ W ++ +T++ +F E+
Sbjct: 45 GLVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQW---LRYAGHTASDEVF--EKL 99
Query: 402 TVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAF-----------PSCSPDGKFL 450
T ++ N + P ++++ + G N F P+ SPDG L
Sbjct: 100 TGIKGAFRTRIAYVVQTNGGQFPYELRV--SDYDGYNQFVVHRSPQPLMSPAWSPDGSKL 157
Query: 451 VFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV 510
+ + SG L + NG +RQ+ P + P++SP G +AF+ ++
Sbjct: 158 AYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGTKLAFALSKTG---- 209
Query: 511 EAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV 570
+ +LYV+ +R+I R + D + L FT++
Sbjct: 210 -SLNLYVMDLASGQIRQITDG---------RSNNTEPTWFPDSQTLAFTSDQAG------ 253
Query: 571 SWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+P +Y + ++G +R+TW G +N
Sbjct: 254 ------RP--QVYKMNINGGAAQRITWEGSQN 277
>gi|398800344|ref|ZP_10559616.1| tol-pal system beta propeller repeat protein TolB [Pantoea sp.
GM01]
gi|398095511|gb|EJL85847.1| tol-pal system beta propeller repeat protein TolB [Pantoea sp.
GM01]
Length = 431
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ RQ+TDG + T P+W P
Sbjct: 246 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----TRQVTDGRYNSTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS-GDVDRERINHVCFSADG 553
+A++S D A +Y + +G +RI G + DV + V S+ G
Sbjct: 302 TLAYTS-----DQAGAPQIYKVGVNGGAPQRITWEGAQNQDADVSTDGKTMVMISSAG 354
Score = 39.7 bits (91), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG + + + SG L V NG IRQ+ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKVAYVTFESGKSALVVQTLSNGA----IRQVASYPRHNGAPAFSPDGSKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ R++ +G R + D + L +T+
Sbjct: 262 ALSKTG-----SLNLYVMDLASGQTRQVT----DG-----RYNSTEPTWFPDSQTLAYTS 307
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +Y V ++G +R+TW G +N
Sbjct: 308 DQAGAP--------------QIYKVGVNGGAPQRITWEGAQN 335
>gi|334345681|ref|YP_004554233.1| protein tolB [Sphingobium chlorophenolicum L-1]
gi|334102303|gb|AEG49727.1| Protein tolB [Sphingobium chlorophenolicum L-1]
Length = 449
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 102/260 (39%), Gaps = 56/260 (21%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ I SDG+ R+ A +SP K ++Y S + + R + I
Sbjct: 199 LAIMDSDGANHRFITNGQSIALTPRFSPDYKSIVYVS----YLNNRVRIYI--------- 245
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+I + L E P SPDG+ ++F +G+ +++ + A G
Sbjct: 246 ------YDIGTGKQRLVTESNNATFAPRWSPDGRNILFSMAVAGNTDVYRVSATGGA--- 296
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
++LT P ID S+SP G I F S+R V YV+ DGSG RRI G
Sbjct: 297 -PQRLTTAPGIDVGGSYSPDGRQIVFESDRSGSQQV-----YVMNADGSGQRRISHGG-- 348
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LR 593
R +S G+ + FT + GD + + SG
Sbjct: 349 -------GRYATPEWSPRGDLIAFT-----------------KISGDFKIAVMTPSGDNE 384
Query: 594 RLTWNGYENGTPAWHPGNQL 613
R+ NG+++ P+W P ++
Sbjct: 385 RILTNGWQDEQPSWSPNGRV 404
Score = 45.4 bits (106), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 103/288 (35%), Gaps = 80/288 (27%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGS-------------FPSFSPDG 341
Y R GES S I ++ P + K L ++ +G+ P FSPD
Sbjct: 169 YARLSGESPFFDSRIAYIAESGPKGNRTKRLAIMDSDGANHRFITNGQSIALTPRFSPDY 228
Query: 342 GLIVFNHDFELNAGIKIAKSD---GSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQS 398
IV+ LN ++I D G +R + F WSP +++++
Sbjct: 229 KSIVYVS--YLNNRVRIYIYDIGTGKQRLVTESNNATFAPRWSPDGRNILF--------- 277
Query: 399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG 458
S + + D R G + S SPDG+ +VF S RSG
Sbjct: 278 ----------SMAVAGNTDVYRVSATGGAPQRLTTAPGIDVGGSYSPDGRQIVFESDRSG 327
Query: 459 HKNLFVLDA-------------------------------VNGEF-------NGDIRQLT 480
+ ++V++A ++G+F +GD ++
Sbjct: 328 SQQVYVMNADGSGQRRISHGGGRYATPEWSPRGDLIAFTKISGDFKIAVMTPSGDNERIL 387
Query: 481 DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
W D PSWSP G ++ F R P + ++ + G RRI
Sbjct: 388 TNGWQDEQPSWSPNGRVLQFF--RTTPGREGSSQVWQVDLTGVNERRI 433
>gi|213423404|ref|ZP_03356391.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
Length = 267
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 82 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDSQ 137
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 138 TLAFTSDQAGRPQV-----YKMNINGGAAQRITW---EGSQNQDAD------VSSDGKFM 183
Query: 557 LFTAN 561
+ ++
Sbjct: 184 VMVSS 188
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 42 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGTKLAF 97
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I R + D + L FT+
Sbjct: 98 ALSKTG-----SLNLYVMDLASGQIRQITDG---------RSNNTEPTWFPDSQTLAFTS 143
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y + ++G +R+TW G +N
Sbjct: 144 DQAG------------RP--QVYKMNINGGAAQRITWEGSQN 171
>gi|448241013|ref|YP_007405066.1| periplasmic protein [Serratia marcescens WW4]
gi|445211377|gb|AGE17047.1| periplasmic protein [Serratia marcescens WW4]
gi|453062188|gb|EMF03179.1| translocation protein TolB [Serratia marcescens VGH107]
Length = 430
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 19/129 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F +SG NL+V++ +G+ I QLTDG +T P+W P G
Sbjct: 245 HNGAPAFSPDGSKLAFALSKSGSLNLYVMNLGSGQ----ITQLTDGRNNNTEPTWFPDGQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ + Y I G +R+ EGS + D E S+DG++L
Sbjct: 301 SLAFTSDQGGRPQI-----YKISASGGAAQRLTW---EGSQNQDSE------VSSDGKFL 346
Query: 557 -LFTANLGA 564
+ + N GA
Sbjct: 347 VMVSTNSGA 355
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L V NG IRQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVVQTLANGA----IRQIASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ N+ +L GSG G R + DG+ L FT+
Sbjct: 261 ALSKSGSLNLYVMNL------GSGQITQLTDG--------RNNNTEPTWFPDGQSLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ G +P +Y + G +RLTW G +N
Sbjct: 307 DQGG------------RP--QIYKISASGGAAQRLTWEGSQN 334
>gi|384176827|ref|YP_005558212.1| dienelactone hydrolase family [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|349596051|gb|AEP92238.1| dienelactone hydrolase family [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
Length = 657
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 41/182 (22%)
Query: 441 PSCSPDGKFLVFRSGRSGHK-NLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
P SPDG+ L F S R G L+++ A GE R+LTD P+ + P WSP G+ I
Sbjct: 69 PRWSPDGRTLAFISDREGDAAQLYIMSAEGGE----ARKLTDIPYGVSKPLWSPDGESIL 124
Query: 500 FSSN----------------RHNPDNVEAFSLYVIKPDGSGLRR------IHVAGPEGS- 536
+ N + P V++ S K DG GL R + V+ G
Sbjct: 125 VTVNLGEGESIDDREKTEQDSYEPVEVQSLSY---KRDGKGLTRGAYAQLVLVSVKSGEM 181
Query: 537 GDVDRERINHV--CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR 594
++ + +H FS DG+WL+F+ANL + +PY +Y++ L L++
Sbjct: 182 KELTSHKADHGDPAFSPDGKWLVFSANLTET-------DDASKPYY-VYMMSLKSGDLKQ 233
Query: 595 LT 596
+T
Sbjct: 234 VT 235
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 80/197 (40%), Gaps = 45/197 (22%)
Query: 441 PSCSPDG------KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
P +PDG K V + S N+++ + G G + T G T P WSP
Sbjct: 19 PQYAPDGTRAAYVKSQVNQEKDSYTSNIWIYETKTG---GSV-PWTHGEKRSTDPRWSPD 74
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
G +AF S+R +A LY++ +G R++ P G ++ +S DGE
Sbjct: 75 GRTLAFISDREG----DAAQLYIMSAEGGEARKL-TDIPYG--------VSKPLWSPDGE 121
Query: 555 WLLFTANLGA-----------------VMAEPVSWPNQFQ-----PYGDLYVVKLDGSGL 592
+L T NLG V + +S+ + Y L +V + +
Sbjct: 122 SILVTVNLGEGESIDDREKTEQDSYEPVEVQSLSYKRDGKGLTRGAYAQLVLVSVKSGEM 181
Query: 593 RRLTWNGYENGTPAWHP 609
+ LT + ++G PA+ P
Sbjct: 182 KELTSHKADHGDPAFSP 198
>gi|427733608|ref|ZP_18965403.1| translocation protein TolB, partial [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
gi|414066861|gb|EKT47332.1| translocation protein TolB, partial [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
Length = 284
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 99 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDSQ 154
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 155 TLAFTSDQAGRPQV-----YKMNINGGAAQRITW---EGSQNQDAD------VSSDGKFM 200
Query: 557 LFTAN 561
+ ++
Sbjct: 201 VMVSS 205
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 59 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGTKLAF 114
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I R + D + L FT+
Sbjct: 115 ALSKTG-----SLNLYVMDLASGQIRQITDG---------RSNNTEPTWFPDSQTLAFTS 160
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y + ++G +R+TW G +N
Sbjct: 161 DQAG------------RP--QVYKMNINGGAAQRITWEGSQN 188
>gi|344924580|ref|ZP_08778041.1| translocation protein TolB [Candidatus Odyssella thessalonicensis
L13]
Length = 451
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 57/96 (59%), Gaps = 9/96 (9%)
Query: 433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
E T + P SPDGK +VF S R G++ ++V++A +G ++R+++ G + P WS
Sbjct: 296 EHTCIDTSPCFSPDGKEIVFTSDRGGNEQIYVMNA-DGS---NVRRISFGGGKYSQPVWS 351
Query: 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
P+GDLIAF+ + + F + V+ PDGS R I
Sbjct: 352 PRGDLIAFTKLQ-----LGQFYIGVMSPDGSNERLI 382
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 96/232 (41%), Gaps = 40/232 (17%)
Query: 385 KHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCS 444
KH++ T P F S IA +SF+ + K L + G + P S
Sbjct: 209 KHMVLT---PRFSSNNR--DIAFLSFEKGGVAQVFLYNLANGTKKLLGQFEGMSFAPRFS 263
Query: 445 PDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
PD LV ++G+ +++ D +G LT+ IDT P +SP G I F+S+R
Sbjct: 264 PDATKLVMSLEKAGNSAIYIKDLQSGALTA----LTEHTCIDTSPCFSPDGKEIVFTSDR 319
Query: 505 HNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA-NLG 563
+ + YV+ DGS +RRI G + S V +S G+ + FT LG
Sbjct: 320 GGNEQI-----YVMNADGSNVRRISFGGGKYSQPV---------WSPRGDLIAFTKLQLG 365
Query: 564 AVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDL 615
QF + V+ DGS RL + Y P W P ++ L
Sbjct: 366 -----------QFY----IGVMSPDGSN-ERLICSDYLVEAPTWSPNGRVIL 401
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 15/74 (20%)
Query: 548 CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
CFS DG+ ++FT++ G N+ +YV+ DGS +RR+++ G + P W
Sbjct: 305 CFSPDGKEIVFTSDRGG---------NE-----QIYVMNADGSNVRRISFGGGKYSQPVW 350
Query: 608 HP-GNQLDLGKLRL 620
P G+ + KL+L
Sbjct: 351 SPRGDLIAFTKLQL 364
>gi|296283271|ref|ZP_06861269.1| translocation protein TolB [Citromicrobium bathyomarinum JL354]
Length = 467
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 92/212 (43%), Gaps = 35/212 (16%)
Query: 422 EIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD 481
+I + L E + P SPDG+++++ +G+ +++ + A NG G +LTD
Sbjct: 266 DIGTGKQTLVTESSNPTFAPRWSPDGRWVLYSMAVNGNTDIYRVSA-NG---GASERLTD 321
Query: 482 GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDR 541
P ID S+SP G I F S+R A +Y++ DGS RRI G
Sbjct: 322 APGIDVGGSYSPDGTRIVFESDRSG-----AQQIYMMNADGSNQRRITFFG--------- 367
Query: 542 ERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYE 601
R +S G+ + FT P F ++ + DG R+LT +G++
Sbjct: 368 GRAATPEWSPRGDQIAFT-----------YIPGDF----NIATMSPDGKNFRKLT-DGWQ 411
Query: 602 NGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFD 633
+ P W P ++ L R E + G Q D
Sbjct: 412 DEAPTWAPNGRI-LQFFRTERNTGRTAIYQVD 442
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 109/288 (37%), Gaps = 81/288 (28%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGS-------------FPSFSPDG 341
Y R GES S I ++ P + K L ++ +G+ P +SPD
Sbjct: 188 YSRLTGESPFFDSRIAYIAETGPKDNRTKRLAIMDSDGANHRFITTGRATALTPRYSPDY 247
Query: 342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRT--AFYNSWSPTEKHVIYTSTGPIFQSE 399
+++ + N I I G+ + TL+ + + F WSP + V+Y+ +
Sbjct: 248 RKLMYLSYVDGNPRIYIYDI-GTGKQTLVTESSNPTFAPRWSPDGRWVLYS------MAV 300
Query: 400 RATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGH 459
I RVS S+ + G + S SPDG +VF S RSG
Sbjct: 301 NGNTDIYRVSANGGASE-------------RLTDAPGIDVGGSYSPDGTRIVFESDRSGA 347
Query: 460 KNLFVLDA-------------------------------VNGEFN--------GDIRQLT 480
+ +++++A + G+FN + R+LT
Sbjct: 348 QQIYMMNADGSNQRRITFFGGRAATPEWSPRGDQIAFTYIPGDFNIATMSPDGKNFRKLT 407
Query: 481 DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
DG W D P+W+P G ++ F N ++Y + G LRR+
Sbjct: 408 DG-WQDEAPTWAPNGRILQFFRTERNTGRT---AIYQVDLTGENLRRL 451
>gi|222474900|ref|YP_002563315.1| translocation protein TolB [Anaplasma marginale str. Florida]
gi|255002872|ref|ZP_05277836.1| translocation protein TolB [Anaplasma marginale str. Puerto Rico]
gi|222419036|gb|ACM49059.1| TOLB protein precursor (tolB) [Anaplasma marginale str. Florida]
Length = 441
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 78/180 (43%), Gaps = 33/180 (18%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G N+ P SPDG+ ++ G N++ +D +G+ +LT+ I+T S+SP
Sbjct: 248 GVNSSPRFSPDGRHVLLSESAQGSTNIYSIDLKSGKST----RLTNDRSINTSASYSPDK 303
Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW 555
I F+S+R LYV+ DG+ RRI G G +S G+W
Sbjct: 304 KSIVFNSDRSGRPQ-----LYVMNADGTNQRRIS----SGKGGYSAP-----AWSPRGDW 349
Query: 556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDL 615
+ FT G + V+K DGSG RL GY +P+W P ++ L
Sbjct: 350 IAFTKTEGKSF--------------HVGVMKPDGSG-ERLLAKGYMVDSPSWSPNGRVIL 394
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 53/209 (25%)
Query: 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNS------------- 379
S P FSPD +V+ + AKS GS ++ D Y++
Sbjct: 207 STPRFSPDARNLVY---------MSYAKSGGS---VVLHDLETGYSTALGGVRGVNSSPR 254
Query: 380 WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNA 439
+SP +HV+ + +S + + I + + S LT + + N +
Sbjct: 255 FSPDGRHVLLS------ESAQGSTNIYSIDLKSGKSTR------------LTNDRSINTS 296
Query: 440 FPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
S SPD K +VF S RSG L+V++A +G + R+++ G + P+WSP+GD IA
Sbjct: 297 -ASYSPDKKSIVFNSDRSGRPQLYVMNA-DGT---NQRRISSGKGGYSAPAWSPRGDWIA 351
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
F+ ++F + V+KPDGSG R +
Sbjct: 352 FTKTEG-----KSFHVGVMKPDGSGERLL 375
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 95/229 (41%), Gaps = 41/229 (17%)
Query: 286 NPFVSANSEFIGYHRFRGES---------TEGQSTIPH-LEPVASPVKELRMLRLNGSFP 335
N +++ EF+ RF ++ G S + H LE S L +R S P
Sbjct: 196 NIYITGRGEFVSTPRFSPDARNLVYMSYAKSGGSVVLHDLETGYSTA--LGGVRGVNSSP 253
Query: 336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGP 394
FSPDG ++ + + + I K L DR+ + S+SP +K ++
Sbjct: 254 RFSPDGRHVLLSESAQGSTNIYSIDLKSGKSTRLTNDRSINTSASYSPDKKSIV------ 307
Query: 395 IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRS 454
F S+R+ R + +D N+ I G + P+ SP G ++ F
Sbjct: 308 -FNSDRS----GRPQLYVMNADGTNQRRISSG--------KGGYSAPAWSPRGDWIAFTK 354
Query: 455 --GRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFS 501
G+S H + D +GE R L G +D+ PSWSP G +I F+
Sbjct: 355 TEGKSFHVGVMKPDG-SGE-----RLLAKGYMVDS-PSWSPNGRVILFT 396
>gi|254521375|ref|ZP_05133430.1| Tol-Pal system beta propeller repeat protein TolB [Stenotrophomonas
sp. SKA14]
gi|219718966|gb|EED37491.1| Tol-Pal system beta propeller repeat protein TolB [Stenotrophomonas
sp. SKA14]
Length = 439
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 29/178 (16%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A SDG T+++ + SWSP + Y S F+ + + I
Sbjct: 186 LMVADSDGYNPQTIVRSAEPLLSPSWSPDGSKLAYVS----FERGNSAIYI--------- 232
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ I + L G N+ P+ SPDG+ L RSG+ ++V+D + +
Sbjct: 233 ------QNIATGARELVTSFRGINSAPAFSPDGRKLALTLSRSGNPEIYVMDLGSKQLT- 285
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
QLT+ IDT P+W+P G + F+S+R V Y + G R+ G
Sbjct: 286 ---QLTNHFAIDTEPTWAPDGSAVYFTSDRGGRPQV-----YKVGAGGGSAERVTFQG 335
>gi|91978608|ref|YP_571267.1| translocation protein TolB [Rhodopseudomonas palustris BisB5]
gi|91685064|gb|ABE41366.1| Twin-arginine translocation pathway signal [Rhodopseudomonas
palustris BisB5]
Length = 449
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NLFV+D + +LTD P IDT PS+SP I F
Sbjct: 266 PRFSPDGQRIIMSLQQGGNSNLFVMDLRSKTTT----RLTDTPAIDTSPSYSPDAARICF 321
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + Y++ G +RI +GS + +S G+++ FT
Sbjct: 322 ESDRGGKPQI-----YIMPAGGGQAQRISFG--DGS-------YSTPVWSPRGDYIAFTK 367
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G A + ++K DGSG R LT +G+ N P + P ++
Sbjct: 368 QGGGQFA--------------IGIMKPDGSGERILT-SGFHNEGPTFAPNGRV 405
>gi|398794416|ref|ZP_10554478.1| tol-pal system beta propeller repeat protein TolB [Pantoea sp.
YR343]
gi|398208677|gb|EJM95388.1| tol-pal system beta propeller repeat protein TolB [Pantoea sp.
YR343]
Length = 431
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ RQ+TDG + T P+W P
Sbjct: 246 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----TRQVTDGRYNSTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS-GDVDRERINHVCFSADG 553
+A++S D A +Y + +G +RI G + DV + V S+ G
Sbjct: 302 TLAYTS-----DQAGAPQIYKVGINGGAPQRITWEGAQNQDADVSTDGKTMVMISSAG 354
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG + + + SG L V NG IRQ+ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKVAYVTFESGKSALVVQTLSNGA----IRQVASYPRHNGAPAFSPDGSKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ R++ +G R + D + L +T+
Sbjct: 262 ALSKTG-----SLNLYVMDLASGQTRQVT----DG-----RYNSTEPTWFPDSQTLAYTS 307
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +Y V ++G +R+TW G +N
Sbjct: 308 DQAGAP--------------QIYKVGINGGAPQRITWEGAQN 335
>gi|312171769|emb|CBX80027.1| Protein tolB precursor [Erwinia amylovora ATCC BAA-2158]
Length = 430
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N PS SPDG L F ++G NL+V+D +G+ IRQ+TDG + T P+W P
Sbjct: 245 HNGAPSFSPDGSKLAFALSKTGSLNLYVMDVGSGQ----IRQVTDGRYNSTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE-W 555
+A++S++ + Y I +G +RI G + D D SADG+
Sbjct: 301 SLAYTSDQAGRPQI-----YKIGVNGGTAQRITWEGAQNQ-DAD--------VSADGKSM 346
Query: 556 LLFTANLGA 564
++ + N GA
Sbjct: 347 VMISTNSGA 355
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG + + + SG L + NG IRQ+ P + PS+SP G +AF
Sbjct: 205 PAWSPDGSKVAYVTFESGKSALVIQTLANGA----IRQVASFPRHNGAPSFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ GSG + R+ + S + W +
Sbjct: 261 ALSKTG-----SLNLYVMD--------------VGSGQI-RQVTDGRYNSTEPTWFPDSQ 300
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+L A ++ P +Y + ++G +R+TW G +N
Sbjct: 301 SL-AYTSDQAGRPQ-------IYKIGVNGGTAQRITWEGAQN 334
>gi|113460408|ref|YP_718470.1| translocation protein TolB [Haemophilus somnus 129PT]
gi|123031156|sp|Q0I1N1.1|TOLB_HAES1 RecName: Full=Protein TolB; Flags: Precursor
gi|112822451|gb|ABI24540.1| biopolymer transport protein [Haemophilus somnus 129PT]
Length = 434
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 114/275 (41%), Gaps = 60/275 (21%)
Query: 343 LIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERA- 401
L F + K GSK + + R A Y+ + + ++Y+S+ P+ +
Sbjct: 163 LTAIRGAFRTKIAYVVQKHGGSKPYQV---RVADYDGHN---QFIVYSSSQPLMSPAWSP 216
Query: 402 -TVQIARVSFQLDPSDDNNRE------EIPCDVKILTKEETGNNAFPSCSPDGKFLVFRS 454
++A VSF+ NR+ ++ + + G+N P+ SPDG + F S
Sbjct: 217 DGSKLAYVSFE-------NRKSQLIVHDLQSGARRVIAAFPGHNGAPAFSPDGSKIAFAS 269
Query: 455 GRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFS 514
+ G N++V++ NG I QLT G +T PSWSP G I F+S+R +
Sbjct: 270 SKDGVLNIYVMNL----GNGTISQLTSGAGNNTEPSWSPDGQSIIFTSDRAGGPQIYQMD 325
Query: 515 LYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPN 574
++ G+G+ + AG SG + SADG L+
Sbjct: 326 VF-----GNGISLVS-AGRGYSGKI----------SADGSILVMI--------------- 354
Query: 575 QFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
YGD V K +G+ + + + + +P+ P
Sbjct: 355 ----YGDNIVKKDLATGVTEMLSSTFLDESPSISP 385
>gi|329888411|ref|ZP_08267009.1| tol-Pal system beta propeller repeat protein TolB [Brevundimonas
diminuta ATCC 11568]
gi|328846967|gb|EGF96529.1| tol-Pal system beta propeller repeat protein TolB [Brevundimonas
diminuta ATCC 11568]
Length = 486
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 83/177 (46%), Gaps = 33/177 (18%)
Query: 433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
E G P S DG + F R G+ +++V++ + + + +LT P IDT PS+S
Sbjct: 279 EFDGQVLAPRFSNDGSKMAFSIIRGGNTDVYVMNLRSRQLS----RLTTDPGIDTSPSFS 334
Query: 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD 552
P G+ I F+S+R + LY ++ DGSG R I G GS +S
Sbjct: 335 PDGNQIVFTSDRSG-----SARLYTMRADGSGQRPISRGG--GS-------YTAPAWSPR 380
Query: 553 GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G+ + FT G +F + V+K DG+G R L+ + +E G P+W P
Sbjct: 381 GDLVAFTKQQGG----------RFH----IGVMKSDGTGERILSSSYFEEG-PSWAP 422
>gi|334140412|ref|YP_004533614.1| translocation protein TolB [Novosphingobium sp. PP1Y]
gi|333938438|emb|CCA91796.1| translocation protein TolB [Novosphingobium sp. PP1Y]
Length = 462
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 34/181 (18%)
Query: 434 ETGNNAF-PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
TGN P SPDGK++++ G +++ + + G G ++LT+GP I+ S+S
Sbjct: 271 RTGNPTMAPRWSPDGKWVLYSMSMGGRTDIYRISSAGG---GTPQRLTNGPGINIGGSYS 327
Query: 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD 552
P G I F S+R + YV+ DGS RI G R +S
Sbjct: 328 PDGSRIVFESDRSGSQQI-----YVMNADGSNQHRISFFG---------GRAATPEWSPR 373
Query: 553 GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQ 612
G+ + FT G + + V+ DG G+R LT N +++ P W P +
Sbjct: 374 GDQIAFTHIAGNLR---------------IAVMSPDGRGMRYLT-NSWQDEAPTWSPNGR 417
Query: 613 L 613
+
Sbjct: 418 I 418
>gi|170717585|ref|YP_001783488.1| translocation protein TolB [Haemophilus somnus 2336]
gi|189035983|sp|B0UVJ6.1|TOLB_HAES2 RecName: Full=Protein TolB; Flags: Precursor
gi|168825714|gb|ACA31085.1| Tol-Pal system beta propeller repeat TolB [Haemophilus somnus 2336]
Length = 434
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 115/275 (41%), Gaps = 60/275 (21%)
Query: 343 LIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERA- 401
L F + K+ GSK + + R A Y+ + + ++Y+S+ P+ +
Sbjct: 163 LTAIRGAFRTKIAYVVQKNGGSKPYQV---RIADYDGHN---QFIVYSSSQPLMSPAWSP 216
Query: 402 -TVQIARVSFQLDPSDDNNRE------EIPCDVKILTKEETGNNAFPSCSPDGKFLVFRS 454
++A VSF+ NR+ ++ + + G+N P+ SPDG + F S
Sbjct: 217 DGSKLAYVSFE-------NRKSQLIVHDLQSGARRVIAAFPGHNGAPAFSPDGSKIAFAS 269
Query: 455 GRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFS 514
+ G N++V++ NG I QLT G +T PSWSP G I F+S+R +
Sbjct: 270 SKDGVLNIYVMNL----GNGTISQLTSGAGNNTEPSWSPDGQSIIFTSDRAGGPQI---- 321
Query: 515 LYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPN 574
Y + G+G+ + AG SG + SADG L+
Sbjct: 322 -YQMDVVGNGVSLVS-AGRGYSGKI----------SADGSILVMI--------------- 354
Query: 575 QFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
YGD V K +G+ + + + + +P+ P
Sbjct: 355 ----YGDNIVKKDLATGVTEMLSSTFLDESPSISP 385
>gi|374262894|ref|ZP_09621454.1| TolB colicin import protein [Legionella drancourtii LLAP12]
gi|363536710|gb|EHL30144.1| TolB colicin import protein [Legionella drancourtii LLAP12]
Length = 419
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 90/204 (44%), Gaps = 25/204 (12%)
Query: 314 HLEPVASPVKELRMLRLNGSFPSFSPDGGLI-VFNHDFELNAGIKIAKSDG-SKRWTLIK 371
L P+A + + +L G FS I V + N +++A +DG + + LI
Sbjct: 127 QLRPLAHHISDEVYQKLTGERGIFSTRIAYISVQRTPQKTNYALEVADADGHNPQSLLIS 186
Query: 372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT 431
SW+P K + Y S F+ +RA QI VS + + L
Sbjct: 187 SEPIMSPSWAPNGKSISYVS----FEKKRA--QIFTVS-------------VETGQRRLI 227
Query: 432 KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491
G N P+ SPDG+ L +SG ++ +D +N +G+++QLT G IDT P +
Sbjct: 228 TSFPGINGAPAWSPDGRQLAVVLSKSGTPKIYSVD-IN---SGNMKQLTFGDAIDTEPRY 283
Query: 492 SPKGDLIAFSSNRHNPDNVEAFSL 515
+P G I F+S R + SL
Sbjct: 284 APDGKSILFTSGRGGSPQIYRLSL 307
>gi|167554282|ref|ZP_02348023.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205321483|gb|EDZ09322.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
Length = 431
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 246 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 302 TLAFTSDQAGRPQV-----YKMNINGGAAQRITW---EGSQNQDAD------VSSDGKFM 347
Query: 557 LFTAN 561
+ ++
Sbjct: 348 VMVSS 352
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGTKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I R + D + L FT+
Sbjct: 262 ALSKTG-----SLNLYVMDLASGQIRQITDG---------RSNNTEPTWFPDSQTLAFTS 307
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y + ++G +R+TW G +N
Sbjct: 308 DQAG------------RP--QVYKMNINGGAAQRITWEGSQN 335
>gi|239947882|ref|ZP_04699635.1| Tol-Pal system beta propeller repeat protein TolB [Rickettsia
endosymbiont of Ixodes scapularis]
gi|239922158|gb|EER22182.1| Tol-Pal system beta propeller repeat protein TolB [Rickettsia
endosymbiont of Ixodes scapularis]
Length = 444
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 137/313 (43%), Gaps = 51/313 (16%)
Query: 298 YHRFRGESTEGQSTIPHLEPVAS--PVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG 355
Y + G++ + I ++ +S +K + ++ +G+ + +G +V F +A
Sbjct: 152 YEKITGDAGYFDTKIVYVSESSSLPKIKRIALMDYDGANNKYLTNGKSLVLTPRFARSAD 211
Query: 356 IKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIF------QSERATVQIARVS 409
S +KR L+ ++ +++V+ +G F +A + IA+
Sbjct: 212 KIFYVSYATKRRALVYEK-----DLKTGKENVVGDFSGISFAPRFSPDGRKAVMSIAK-- 264
Query: 410 FQLDPSDDNNREEIPCDVKILTK--EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA 467
+ + EI K L K + G N PS SPDGK +V+ S R+G L+++++
Sbjct: 265 -----NGSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGKKIVYNSDRNGVPQLYIMNS 319
Query: 468 VNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP---DGSG 524
+G D+++++ G T PSWSP+GD IAF+ D + F++ ++K D
Sbjct: 320 -DGS---DVQRISFGGGSYTAPSWSPRGDYIAFTKITRG-DGGKTFNIGIMKACPQDDEN 374
Query: 525 LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG--DL 582
RI +G + C+S +G ++F WP++ + G +
Sbjct: 375 SERIITSG---------YLVESPCWSPNGRVIMFAKG----------WPSRAKAPGKNKI 415
Query: 583 YVVKLDGSGLRRL 595
+V+ L G R +
Sbjct: 416 FVIDLTGHNEREI 428
>gi|294013406|ref|YP_003546866.1| TolB protein [Sphingobium japonicum UT26S]
gi|292676736|dbj|BAI98254.1| TolB protein [Sphingobium japonicum UT26S]
Length = 417
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 103/260 (39%), Gaps = 56/260 (21%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ I SDG+ R+ A +SP K ++Y S + + R + +
Sbjct: 167 LAIMDSDGANHRFITNGQSIALTPRFSPDYKSIVYVS----YLNNRVRIYV--------- 213
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+I + L E + P SPDG+ ++F +G+ +++ + A G
Sbjct: 214 ------YDIGTGKQRLVTESSNATFAPRWSPDGRSILFSMAIAGNTDIYRVSATGGA--- 264
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
++LT P ID S+SP G I F S+R + YV+ DGSG RRI G
Sbjct: 265 -PQRLTTAPGIDVGGSYSPDGRQIVFESDRSGSQQI-----YVMNADGSGQRRISHGG-- 316
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LR 593
R +S G+ + FT + GD + + SG
Sbjct: 317 -------GRYATPEWSPRGDLIAFT-----------------KISGDFKIAVMTPSGDNE 352
Query: 594 RLTWNGYENGTPAWHPGNQL 613
R+ NG+++ P+W P ++
Sbjct: 353 RILTNGWQDEQPSWSPNGRV 372
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 101/288 (35%), Gaps = 80/288 (27%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGS-------------FPSFSPDG 341
Y R GES S I ++ P + K L ++ +G+ P FSPD
Sbjct: 137 YARLSGESPFFDSRIAYIAESGPKGNRTKRLAIMDSDGANHRFITNGQSIALTPRFSPDY 196
Query: 342 GLIVFNHDFELNAGIKIAKSD---GSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQS 398
IV+ LN ++I D G +R F WSP + +++
Sbjct: 197 KSIVYVS--YLNNRVRIYVYDIGTGKQRLVTESSNATFAPRWSPDGRSILF--------- 245
Query: 399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG 458
S + + D R G + S SPDG+ +VF S RSG
Sbjct: 246 ----------SMAIAGNTDIYRVSATGGAPQRLTTAPGIDVGGSYSPDGRQIVFESDRSG 295
Query: 459 HKNLFVLDA-------------------------------VNGEF-------NGDIRQLT 480
+ ++V++A ++G+F +GD ++
Sbjct: 296 SQQIYVMNADGSGQRRISHGGGRYATPEWSPRGDLIAFTKISGDFKIAVMTPSGDNERIL 355
Query: 481 DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
W D PSWSP G ++ F R P + ++ + G RRI
Sbjct: 356 TNGWQDEQPSWSPNGRVLQFF--RTTPGREGSSQVWQVDLTGVNERRI 401
>gi|359398311|ref|ZP_09191333.1| translocation protein TolB [Novosphingobium pentaromativorans
US6-1]
gi|357600318|gb|EHJ62015.1| translocation protein TolB [Novosphingobium pentaromativorans
US6-1]
Length = 462
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 34/181 (18%)
Query: 434 ETGNNAF-PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
TGN P SPDGK++++ G +++ + + G G ++LT+GP I+ S+S
Sbjct: 271 RTGNPTMAPRWSPDGKWVLYSMSMGGRTDIYRISSAGG---GTPQRLTNGPGINIGGSYS 327
Query: 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD 552
P G I F S+R + YV+ DGS RI G R +S
Sbjct: 328 PDGSRIVFESDRSGSQQI-----YVMNADGSNQHRISFFG---------GRAATPEWSPR 373
Query: 553 GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQ 612
G+ + FT G + + V+ DG G+R LT N +++ P W P +
Sbjct: 374 GDQIAFTHIAGNLR---------------IAVMSPDGRGMRYLT-NSWQDEAPTWSPNGR 417
Query: 613 L 613
+
Sbjct: 418 I 418
>gi|319786285|ref|YP_004145760.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Pseudoxanthomonas suwonensis 11-1]
gi|317464797|gb|ADV26529.1| Tol-Pal system beta propeller repeat protein TolB
[Pseudoxanthomonas suwonensis 11-1]
Length = 462
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 107/280 (38%), Gaps = 57/280 (20%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A SDG +++ + +WSP + + Y S F+ +++ I
Sbjct: 209 LVVADSDGWNPQVVVRSAEPLLSPAWSPDGRKLAYVS----FERGNSSIYI--------- 255
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++I + L G N+ PS SPDG+ L RSG+ ++V+D + +
Sbjct: 256 ------QDIATGARELVSSFRGINSAPSFSPDGRRLALSLSRSGNPEIYVMDLGSKQLT- 308
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI------ 528
QLT+ IDT P+WS G I F+S+R + Y + G R+
Sbjct: 309 ---QLTNHFGIDTEPTWSADGSTIYFTSDRGGRPQI-----YQVPSSGGAASRVTFQGNY 360
Query: 529 -----------HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQ 577
+A +GSG+ R + + W T + G++ P PN
Sbjct: 361 NATATVSHDGKKIAMAQGSGNTYRIAMMDTSLGSP-RW--STISTGSLDESPSFAPNGSM 417
Query: 578 PY--------GDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G LY V D +RL + PAW P
Sbjct: 418 LIYAAREGGRGVLYAVSADARVRQRLVLADGDVREPAWSP 457
>gi|161615018|ref|YP_001588983.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|168238898|ref|ZP_02663956.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|168240606|ref|ZP_02665538.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|168264358|ref|ZP_02686331.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|168467689|ref|ZP_02701526.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|168820117|ref|ZP_02832117.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|194443806|ref|YP_002039989.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194450069|ref|YP_002044782.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194470048|ref|ZP_03076032.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194737053|ref|YP_002113855.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197250927|ref|YP_002145709.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197264907|ref|ZP_03164981.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|198244972|ref|YP_002214718.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200390881|ref|ZP_03217492.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204929894|ref|ZP_03220915.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|238911681|ref|ZP_04655518.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|374978775|ref|ZP_09720117.1| Tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|378955883|ref|YP_005213370.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|378983347|ref|YP_005246502.1| tol-pal system protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|379699961|ref|YP_005241689.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|386590662|ref|YP_006087062.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
gi|416423126|ref|ZP_11690649.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|416428604|ref|ZP_11693958.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|416439690|ref|ZP_11700330.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|416444908|ref|ZP_11704023.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|416449555|ref|ZP_11706782.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|416459456|ref|ZP_11713957.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|416467119|ref|ZP_11717239.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|416473698|ref|ZP_11719829.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|416486644|ref|ZP_11725151.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|416503102|ref|ZP_11732873.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|416509093|ref|ZP_11736374.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|416522981|ref|ZP_11740800.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|416528628|ref|ZP_11744021.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|416538691|ref|ZP_11749548.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|416545469|ref|ZP_11753323.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|416554738|ref|ZP_11758436.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|416561018|ref|ZP_11761573.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|416565871|ref|ZP_11763651.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|416576387|ref|ZP_11769022.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|416584757|ref|ZP_11774395.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|416601474|ref|ZP_11785019.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|416625816|ref|ZP_11798661.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|416626731|ref|ZP_11798795.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|416642800|ref|ZP_11805952.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|416657705|ref|ZP_11813889.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|416668200|ref|ZP_11818783.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|416678496|ref|ZP_11822685.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|416692251|ref|ZP_11826398.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|416705521|ref|ZP_11830930.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|416713487|ref|ZP_11837129.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|416719181|ref|ZP_11841037.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|416724326|ref|ZP_11844786.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|416732710|ref|ZP_11849895.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|416741066|ref|ZP_11854897.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|416748270|ref|ZP_11858632.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|416758088|ref|ZP_11863469.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|416764784|ref|ZP_11868287.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|416769093|ref|ZP_11870902.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|417325099|ref|ZP_12111167.1| TolB protein [Salmonella enterica subsp. enterica serovar Adelaide
str. A4-669]
gi|417340181|ref|ZP_12121568.1| TolB protein [Salmonella enterica subsp. enterica serovar Baildon
str. R6-199]
gi|417347680|ref|ZP_12126824.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
gi|417364293|ref|ZP_12137270.1| TolB protein [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|417381691|ref|ZP_12147928.1| TolB protein [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|417411529|ref|ZP_12158175.1| TolB protein [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|417527652|ref|ZP_12184889.1| TolB protein [Salmonella enterica subsp. enterica serovar Urbana
str. R8-2977]
gi|418484840|ref|ZP_13053831.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|418507089|ref|ZP_13073415.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|418510794|ref|ZP_13077069.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|418763508|ref|ZP_13319625.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|418764610|ref|ZP_13320707.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|418771619|ref|ZP_13327625.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|418774536|ref|ZP_13330504.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|418782018|ref|ZP_13337887.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|418785580|ref|ZP_13341411.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|418790601|ref|ZP_13346374.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|418793566|ref|ZP_13349294.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|418797238|ref|ZP_13352926.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|418801423|ref|ZP_13357058.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|418808272|ref|ZP_13363828.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|418812429|ref|ZP_13367953.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|418825728|ref|ZP_13380997.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|418832637|ref|ZP_13387572.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|418837857|ref|ZP_13392719.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|418841092|ref|ZP_13395913.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|418844535|ref|ZP_13399325.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|418851776|ref|ZP_13406483.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|418854400|ref|ZP_13409075.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|418860560|ref|ZP_13415137.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|418865472|ref|ZP_13419950.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|418867792|ref|ZP_13422245.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|419787463|ref|ZP_14313175.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|419795321|ref|ZP_14320922.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|161364382|gb|ABX68150.1| hypothetical protein SPAB_02778 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194402469|gb|ACF62691.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194408373|gb|ACF68592.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194456412|gb|EDX45251.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194712555|gb|ACF91776.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|195629207|gb|EDX48575.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|197214630|gb|ACH52027.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|197243162|gb|EDY25782.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197288350|gb|EDY27731.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|197939488|gb|ACH76821.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|199603326|gb|EDZ01872.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204320888|gb|EDZ06089.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205339859|gb|EDZ26623.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|205343003|gb|EDZ29767.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205347159|gb|EDZ33790.1| tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|312911775|dbj|BAJ35749.1| tol-pal system protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321226327|gb|EFX51378.1| Tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|322615818|gb|EFY12736.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322621377|gb|EFY18233.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322623634|gb|EFY20472.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322628904|gb|EFY25685.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322634886|gb|EFY31616.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322636586|gb|EFY33290.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322641771|gb|EFY38405.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322647827|gb|EFY44307.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322651359|gb|EFY47741.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322652660|gb|EFY49009.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322658641|gb|EFY54902.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322664930|gb|EFY61121.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322668401|gb|EFY64557.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322675251|gb|EFY71327.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|323129060|gb|ADX16490.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|323191722|gb|EFZ76975.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323200616|gb|EFZ85691.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323202287|gb|EFZ87335.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323212128|gb|EFZ96953.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323216147|gb|EGA00876.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323221362|gb|EGA05781.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323226785|gb|EGA10976.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323230999|gb|EGA15115.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323234168|gb|EGA18257.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323238137|gb|EGA22195.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323243572|gb|EGA27590.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323247403|gb|EGA31362.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323251392|gb|EGA35264.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323256485|gb|EGA40217.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323260624|gb|EGA44233.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323264695|gb|EGA48197.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323270959|gb|EGA54394.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|340761305|gb|AEK67839.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|340761307|gb|AEK67840.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|340761309|gb|AEK67841.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|340761311|gb|AEK67842.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|340761313|gb|AEK67843.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|340761315|gb|AEK67844.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|340761317|gb|AEK67845.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|340761319|gb|AEK67846.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|340761321|gb|AEK67847.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|340761323|gb|AEK67848.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|340761325|gb|AEK67849.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|340761327|gb|AEK67850.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|340761329|gb|AEK67851.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|340761333|gb|AEK67853.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|340761335|gb|AEK67854.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|340761337|gb|AEK67855.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|340761339|gb|AEK67856.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|340761341|gb|AEK67857.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|340761343|gb|AEK67858.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|340761345|gb|AEK67859.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|340761347|gb|AEK67860.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|340761349|gb|AEK67861.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|340761351|gb|AEK67862.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|340761353|gb|AEK67863.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|340761355|gb|AEK67864.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|340761357|gb|AEK67865.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|340761359|gb|AEK67866.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|340761361|gb|AEK67867.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|340761363|gb|AEK67868.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|340761365|gb|AEK67869.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|340761367|gb|AEK67870.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|340761371|gb|AEK67872.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|353577103|gb|EHC39371.1| TolB protein [Salmonella enterica subsp. enterica serovar Adelaide
str. A4-669]
gi|353577623|gb|EHC39729.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
gi|353597724|gb|EHC54353.1| TolB protein [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|353616935|gb|EHC68057.1| TolB protein [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|353626558|gb|EHC75069.1| TolB protein [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|353668618|gb|EHD05765.1| TolB protein [Salmonella enterica subsp. enterica serovar Urbana
str. R8-2977]
gi|357206494|gb|AET54540.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|357959449|gb|EHJ83668.1| TolB protein [Salmonella enterica subsp. enterica serovar Baildon
str. R6-199]
gi|363551017|gb|EHL35340.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|363551658|gb|EHL35973.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|363553285|gb|EHL37537.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|363560720|gb|EHL44854.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|363561350|gb|EHL45472.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|363574547|gb|EHL58415.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|363579778|gb|EHL63551.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|366057868|gb|EHN22168.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|366081908|gb|EHN45847.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|366085376|gb|EHN49261.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|383797706|gb|AFH44788.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
gi|392613113|gb|EIW95576.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|392619888|gb|EIX02265.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|392733188|gb|EIZ90391.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|392733194|gb|EIZ90396.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|392742837|gb|EIZ99917.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|392744996|gb|EJA02035.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|392750911|gb|EJA07869.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|392751973|gb|EJA08919.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|392757730|gb|EJA14614.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|392764311|gb|EJA21112.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|392769195|gb|EJA25935.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|392777169|gb|EJA33855.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|392777291|gb|EJA33975.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|392780076|gb|EJA36734.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|392797034|gb|EJA53359.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|392797921|gb|EJA54218.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|392809060|gb|EJA65101.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|392812257|gb|EJA68250.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|392814344|gb|EJA70297.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|392816484|gb|EJA72411.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|392824637|gb|EJA80409.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|392826468|gb|EJA82194.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|392827868|gb|EJA83567.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|392838981|gb|EJA94527.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
Length = 431
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 246 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 302 TLAFTSDQAGRPQV-----YKMNINGGAAQRITW---EGSQNQDAD------VSSDGKFM 347
Query: 557 LFTAN 561
+ ++
Sbjct: 348 VMVSS 352
Score = 42.7 bits (99), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGTKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I R + D + L FT+
Sbjct: 262 ALSKTG-----SLNLYVMDLASGQIRQITDG---------RSNNTEPTWFPDSQTLAFTS 307
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y + ++G +R+TW G +N
Sbjct: 308 DQAG------------RP--QVYKMNINGGAAQRITWEGSQN 335
>gi|16759687|ref|NP_455304.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29142540|ref|NP_805882.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|32699709|sp|Q8Z8C0.1|TOLB_SALTI RecName: Full=Protein TolB; Flags: Precursor
gi|25513116|pir||AH0592 tolB protein precursor [imported] - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|16501980|emb|CAD05210.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Typhi]
gi|29138171|gb|AAO69742.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
Length = 430
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 TLAFTSDQAGRPQV-----YKMNINGGAAQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTAN 561
+ ++
Sbjct: 347 VMVSS 351
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 55/272 (20%), Positives = 107/272 (39%), Gaps = 50/272 (18%)
Query: 342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERA 401
GL+ N D N ++ + G+ L ++ W ++ +T++ +F E+
Sbjct: 102 GLVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQW---LRYAGHTASDEVF--EKL 156
Query: 402 TVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAF-----------PSCSPDGKFL 450
T ++ N + P ++++ + G N F P+ SPDG L
Sbjct: 157 TGIKGAFRTRIAYVVQTNGGQFPYELRV--SDYDGYNQFVVHRSPQPLMSPAWSPDGSKL 214
Query: 451 VFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV 510
+ + SG L + NG +RQ+ P + P++SP G +AF+ ++
Sbjct: 215 AYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGTKLAFALSKTG---- 266
Query: 511 EAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV 570
+ +LYV+ +R+I R + D + L FT++
Sbjct: 267 -SLNLYVMDLASGQIRQITDG---------RSNNTEPTWFPDSQTLAFTSDQAG------ 310
Query: 571 SWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+P +Y + ++G +R+TW G +N
Sbjct: 311 ------RP--QVYKMNINGGAAQRITWEGSQN 334
>gi|62179322|ref|YP_215739.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|375113647|ref|ZP_09758817.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|75484379|sp|Q57RK3.1|TOLB_SALCH RecName: Full=Protein TolB; Flags: Precursor
gi|62126955|gb|AAX64658.1| tol protein required for outer membrane integrity, uptake of group
A colicins, and translocation of phage DNA to cytoplasm,
may be part of multiprotein peptidoglycan recycling
complex (Two domains) [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|322713793|gb|EFZ05364.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
Length = 430
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 TLAFTSDQAGRPQV-----YKMNINGGAAQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTAN 561
+ ++
Sbjct: 347 VMVSS 351
Score = 42.7 bits (99), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGS----VRQVASFPRHNGAPAFSPDGTKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQITDG---------RSNNTEPTWFPDSQTLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y + ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKMNINGGAAQRITWEGSQN 334
>gi|394989415|ref|ZP_10382248.1| hypothetical protein SCD_01834 [Sulfuricella denitrificans skB26]
gi|393790915|dbj|GAB71887.1| hypothetical protein SCD_01834 [Sulfuricella denitrificans skB26]
Length = 427
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 129/318 (40%), Gaps = 55/318 (17%)
Query: 315 LEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHD-FELNAGIKIAKSDGSKRWTLIKDR 373
+ A + +L +L G FS IV + +EL ++A +DG T++ +
Sbjct: 137 VRATAHKIADLIYEKLTGDVGVFSTRIAYIVKSGSRYEL----QVADADGYGAQTVLASK 192
Query: 374 TAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK 432
+ SWSP + Y S F+ ++ + + + + + +
Sbjct: 193 EPIISPSWSPDGTRLAYVS----FERKKPIIYV---------------QSLVSGQRQVLA 233
Query: 433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
+ GNN+ P+ SPDGK L + G +++ +N + +G +++++ IDT PS+S
Sbjct: 234 QFKGNNSAPAWSPDGKQLALVLTKDGGSQIYL---INADGSG-VKRVSYSSGIDTEPSFS 289
Query: 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG---------PEGSGDVDRER 543
P G I F+S+R + Y + GSG +R+ G P+G +R
Sbjct: 290 PDGAFIIFTSDRGGSPQI-----YRMSVSGSGAQRLTFEGNYNVSPHFSPDGKSFTFIQR 344
Query: 544 IN----HVCFS--ADGEWLLFTANLG------AVMAEPVSWPNQFQPYGDLYVVKLDGSG 591
++ HV A G+ L T A + + + + G L V DG
Sbjct: 345 VSGSSFHVALQDVASGQMQLLTDTRMDESPSFAPNGKMLLYATEIGGRGILAAVSSDGRV 404
Query: 592 LRRLTWNGYENGTPAWHP 609
+RL+ + P W P
Sbjct: 405 KQRLSTQAGDVREPEWGP 422
>gi|445274669|ref|ZP_21410506.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
gi|444887763|gb|ELY11447.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
Length = 394
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 209 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDSQ 264
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 265 TLAFTSDQAGRPQV-----YKMNINGGAAQRITW---EGSQNQDAD------VSSDGKFM 310
Query: 557 LFTAN 561
+ ++
Sbjct: 311 VMVSS 315
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 169 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGTKLAF 224
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I R + D + L FT+
Sbjct: 225 ALSKTG-----SLNLYVMDLASGQIRQITDG---------RSNNTEPTWFPDSQTLAFTS 270
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y + ++G +R+TW G +N
Sbjct: 271 DQAG------------RP--QVYKMNINGGAAQRITWEGSQN 298
>gi|421887500|ref|ZP_16318655.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|379982854|emb|CCF90928.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
Length = 430
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 TLAFTSDQAGRPQV-----YKMNINGGAAQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTAN 561
+ ++
Sbjct: 347 VMVSS 351
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGTKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQITDG---------RSNNTEPTWFPDSQTLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y + ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKMNINGGAAQRITWEGSQN 334
>gi|416594815|ref|ZP_11780629.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|416608578|ref|ZP_11789470.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|416615047|ref|ZP_11793199.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|322670511|gb|EFY66644.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322679677|gb|EFY75718.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322684847|gb|EFY80846.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|340761331|gb|AEK67852.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|340761369|gb|AEK67871.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|340761373|gb|AEK67873.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
Length = 431
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 246 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 302 TLAFTSDQAGRPQV-----YKMNINGGAAQRITW---EGSQNQDAD------VSSDGKFM 347
Query: 557 LFTAN 561
+ ++
Sbjct: 348 VMVSS 352
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGTKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I R + D + L FT+
Sbjct: 262 ALSKTG-----SLNLYVMDLASGQIRQITDG---------RSNNTEPTWFPDSQTLAFTS 307
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y + ++G +R+TW G +N
Sbjct: 308 DQAG------------RP--QVYKMNINGGAAQRITWEGSQN 335
>gi|428280730|ref|YP_005562465.1| hypothetical protein BSNT_04770 [Bacillus subtilis subsp. natto
BEST195]
gi|291485687|dbj|BAI86762.1| hypothetical protein BSNT_04770 [Bacillus subtilis subsp. natto
BEST195]
Length = 657
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 41/182 (22%)
Query: 441 PSCSPDGKFLVFRSGRSGHK-NLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
P SPDG L F S R G L+++ A GE R+LTD P+ + P WSP G+ I
Sbjct: 69 PRWSPDGCTLAFISDREGDAAQLYMMSAEGGE----ARKLTDIPYGVSKPIWSPDGESIL 124
Query: 500 FS----------------SNRHNPDNVEAFSLYVIKPDGSGLRR------IHVAGPEGS- 536
+ + + P V+ S K DG GL R + V+ G
Sbjct: 125 VTVSLGEGGNIDDREKTEQDSYEPVEVQGLSY---KRDGKGLTRGAYAQLVLVSVKSGEM 181
Query: 537 GDVDRERINHV--CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR 594
++ + +H FS DG+WL+F+ANL + S P+ D+Y++ L+ L++
Sbjct: 182 KELTSHKADHGDPAFSPDGKWLVFSANL--TETDDASKPH------DVYIMSLESGDLKQ 233
Query: 595 LT 596
+T
Sbjct: 234 VT 235
>gi|213051767|ref|ZP_03344645.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213427709|ref|ZP_03360459.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213857527|ref|ZP_03384498.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|289827213|ref|ZP_06545933.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|378960291|ref|YP_005217777.1| hypothetical protein STBHUCCB_22510 [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|374354163|gb|AEZ45924.1| hypothetical protein STBHUCCB_22510 [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
Length = 431
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 246 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 302 TLAFTSDQAGRPQV-----YKMNINGGAAQRITW---EGSQNQDAD------VSSDGKFM 347
Query: 557 LFTAN 561
+ ++
Sbjct: 348 VMVSS 352
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 55/272 (20%), Positives = 107/272 (39%), Gaps = 50/272 (18%)
Query: 342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERA 401
GL+ N D N ++ + G+ L ++ W ++ +T++ +F E+
Sbjct: 103 GLVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQW---LRYAGHTASDEVF--EKL 157
Query: 402 TVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAF-----------PSCSPDGKFL 450
T ++ N + P ++++ + G N F P+ SPDG L
Sbjct: 158 TGIKGAFRTRIAYVVQTNGGQFPYELRV--SDYDGYNQFVVHRSPQPLMSPAWSPDGSKL 215
Query: 451 VFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV 510
+ + SG L + NG +RQ+ P + P++SP G +AF+ ++
Sbjct: 216 AYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGTKLAFALSKTG---- 267
Query: 511 EAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV 570
+ +LYV+ +R+I R + D + L FT++
Sbjct: 268 -SLNLYVMDLASGQIRQITDG---------RSNNTEPTWFPDSQTLAFTSDQAG------ 311
Query: 571 SWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+P +Y + ++G +R+TW G +N
Sbjct: 312 ------RP--QVYKMNINGGAAQRITWEGSQN 335
>gi|187251684|ref|YP_001876166.1| putative Tol biopolymer transport system protein [Elusimicrobium
minutum Pei191]
gi|186971844|gb|ACC98829.1| Putative component of the Tol biopolymer transport system
[Elusimicrobium minutum Pei191]
Length = 428
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 109/272 (40%), Gaps = 61/272 (22%)
Query: 344 IVFNHDFELNAGIKIAKSDGSKRWTLIKDRT-AFYNSWSPTEKHVIYTS----TGPIFQS 398
I F + N I IA DG+ L DR+ A WS K + YTS +F
Sbjct: 168 IAFANSATGNKEIYIADYDGANLKKLTTDRSIALLPRWSKDGK-IYYTSYRYKNPDVFSI 226
Query: 399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG 458
+ A +++ V+ +TK G SPDG+ ++ RSG
Sbjct: 227 DLAAGKVSPVA--------------------ITK---GLELIGGVSPDGRSIILT--RSG 261
Query: 459 HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH-NPDNVEAFSLYV 517
N + + +N E G QLTD +D PS+SP G I F SNR NP +YV
Sbjct: 262 GTNPSIFE-INLE-TGKSVQLTDKAGVDGSPSYSPDGRFITFVSNRSGNP------QIYV 313
Query: 518 IKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQ 577
+ RRI + + +S GEW++F A P+
Sbjct: 314 MDLQNGSTRRITSS---------LNWADTPQWSPTGEWIVFAGRTAA--QNPI------- 355
Query: 578 PYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
D+++V + G+ +R+LT + N P W P
Sbjct: 356 ---DIFLVDITGTQIRQLTSDSANNEDPTWSP 384
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 18/134 (13%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAK-SDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTG 393
PS+SPDG I F + N I + +GS R A WSPT + +++
Sbjct: 290 PSYSPDGRFITFVSNRSGNPQIYVMDLQNGSTRRITSSLNWADTPQWSPTGEWIVFAG-- 347
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453
R Q F +D + R+ LT ++ NN P+ SPDG+F+ F
Sbjct: 348 ------RTAAQNPIDIFLVDITGTQIRQ--------LT-SDSANNEDPTWSPDGRFIAFT 392
Query: 454 SGRSGHKNLFVLDA 467
+ R G + L+V+DA
Sbjct: 393 TTRKGRRQLYVMDA 406
>gi|16764118|ref|NP_459733.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|56414135|ref|YP_151210.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197363057|ref|YP_002142694.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|205352012|ref|YP_002225813.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207856192|ref|YP_002242843.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|378444232|ref|YP_005231864.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378449111|ref|YP_005236470.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|378698691|ref|YP_005180648.1| tolB protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|378988138|ref|YP_005251302.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|409249191|ref|YP_006885026.1| Protein tolB Flags: Precursor [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|416648756|ref|ZP_11809401.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|418491338|ref|ZP_13057860.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|418496781|ref|ZP_13063212.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|418498353|ref|ZP_13064768.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|418504650|ref|ZP_13071006.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|418525867|ref|ZP_13091847.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|418819094|ref|ZP_13374555.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|418823446|ref|ZP_13378854.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|419727901|ref|ZP_14254869.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|419734203|ref|ZP_14261098.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|419740917|ref|ZP_14267633.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|419743855|ref|ZP_14270517.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|419749840|ref|ZP_14276314.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|421359206|ref|ZP_15809502.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|421361273|ref|ZP_15811537.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|421368332|ref|ZP_15818523.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|421372153|ref|ZP_15822302.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|421374692|ref|ZP_15824815.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|421382992|ref|ZP_15833036.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|421385785|ref|ZP_15835801.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|421391338|ref|ZP_15841307.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|421396501|ref|ZP_15846427.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|421400205|ref|ZP_15850095.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|421401679|ref|ZP_15851547.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|421409329|ref|ZP_15859123.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|421411820|ref|ZP_15861583.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|421415318|ref|ZP_15865045.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|421424158|ref|ZP_15873809.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|421427370|ref|ZP_15876992.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|421430259|ref|ZP_15879853.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|421433296|ref|ZP_15882860.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|421439460|ref|ZP_15888951.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|421442583|ref|ZP_15892032.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|421572133|ref|ZP_16017793.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|421577158|ref|ZP_16022746.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|421581748|ref|ZP_16027289.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|421585222|ref|ZP_16030721.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|422024882|ref|ZP_16371356.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|422029921|ref|ZP_16376165.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|427546810|ref|ZP_18926677.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|427562906|ref|ZP_18931437.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|427581923|ref|ZP_18936262.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|427603794|ref|ZP_18941036.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|427628564|ref|ZP_18945946.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|427651775|ref|ZP_18950701.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|427660140|ref|ZP_18955664.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|427665251|ref|ZP_18960408.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|436626231|ref|ZP_20515091.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|436793580|ref|ZP_20521757.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|436810879|ref|ZP_20529917.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|436813375|ref|ZP_20531563.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|436843854|ref|ZP_20537823.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|436853799|ref|ZP_20543550.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|436856473|ref|ZP_20545578.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|436865848|ref|ZP_20551772.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|436871935|ref|ZP_20555109.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|436875993|ref|ZP_20557593.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|436889023|ref|ZP_20565024.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|436896989|ref|ZP_20569688.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|436904258|ref|ZP_20574275.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|436910266|ref|ZP_20576851.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|436918518|ref|ZP_20581689.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|436930982|ref|ZP_20589131.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|436933342|ref|ZP_20589637.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|436939310|ref|ZP_20593644.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|436954370|ref|ZP_20601918.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|436959945|ref|ZP_20604142.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|436967048|ref|ZP_20607211.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|436976317|ref|ZP_20611762.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|436992498|ref|ZP_20618003.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|437011084|ref|ZP_20624365.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|437014644|ref|ZP_20625619.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|437035837|ref|ZP_20633763.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|437038544|ref|ZP_20634345.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|437051706|ref|ZP_20641526.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|437059599|ref|ZP_20646084.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|437062975|ref|ZP_20647739.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|437078646|ref|ZP_20656140.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|437079604|ref|ZP_20656668.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|437089693|ref|ZP_20662265.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|437108316|ref|ZP_20667525.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|437125318|ref|ZP_20673929.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|437131387|ref|ZP_20677330.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|437139959|ref|ZP_20682194.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|437143233|ref|ZP_20684201.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|437150657|ref|ZP_20688809.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|437161913|ref|ZP_20695754.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|437173060|ref|ZP_20701583.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|437175170|ref|ZP_20702633.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|437188590|ref|ZP_20710463.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|437238655|ref|ZP_20714195.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|437264144|ref|ZP_20719776.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|437270487|ref|ZP_20723283.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|437281202|ref|ZP_20728395.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|437300968|ref|ZP_20733174.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|437306733|ref|ZP_20734375.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|437325948|ref|ZP_20740090.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|437345858|ref|ZP_20746741.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|437370750|ref|ZP_20749281.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|437421584|ref|ZP_20754873.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|437454150|ref|ZP_20759994.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|437469728|ref|ZP_20764743.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|437485554|ref|ZP_20769666.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|437496093|ref|ZP_20773153.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|437507887|ref|ZP_20776168.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|437523517|ref|ZP_20779324.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|437564740|ref|ZP_20787002.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|437570205|ref|ZP_20788240.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|437589257|ref|ZP_20794129.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|437599380|ref|ZP_20796858.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|437618043|ref|ZP_20803024.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|437630852|ref|ZP_20806278.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|437661843|ref|ZP_20813207.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|437674442|ref|ZP_20816523.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|437697737|ref|ZP_20823017.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|437709742|ref|ZP_20826230.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|437736107|ref|ZP_20832528.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|437752082|ref|ZP_20833946.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|437812757|ref|ZP_20841611.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|437825219|ref|ZP_20843806.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|437949398|ref|ZP_20851924.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|437994693|ref|ZP_20853912.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
gi|438083751|ref|ZP_20858199.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|438097025|ref|ZP_20862203.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|438106743|ref|ZP_20866582.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|438140533|ref|ZP_20874955.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|440764086|ref|ZP_20943118.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|440767324|ref|ZP_20946305.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|440773333|ref|ZP_20952230.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|445134326|ref|ZP_21382908.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|445139995|ref|ZP_21384647.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|445152802|ref|ZP_21390994.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|445172032|ref|ZP_21396307.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|445216002|ref|ZP_21402002.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|445222157|ref|ZP_21403247.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|445325252|ref|ZP_21412508.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|445348788|ref|ZP_21419745.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|445366862|ref|ZP_21425492.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|452121034|ref|YP_007471282.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
gi|32699711|sp|Q8ZQT5.1|TOLB_SALTY RecName: Full=Protein TolB; Flags: Precursor
gi|67461910|sp|Q5PCN2.1|TOLB_SALPA RecName: Full=Protein TolB; Flags: Precursor
gi|226705890|sp|B5QX24.1|TOLB_SALEP RecName: Full=Protein TolB; Flags: Precursor
gi|226705891|sp|B5R699.1|TOLB_SALG2 RecName: Full=Protein TolB; Flags: Precursor
gi|226705892|sp|B5BC62.1|TOLB_SALPK RecName: Full=Protein TolB; Flags: Precursor
gi|16419258|gb|AAL19692.1| tol protein required for outer membrane integrity [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|56128392|gb|AAV77898.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197094534|emb|CAR60054.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|205271793|emb|CAR36627.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|206707995|emb|CAR32284.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|261246011|emb|CBG23813.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267992489|gb|ACY87374.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301157339|emb|CBW16828.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|320085019|emb|CBY94808.1| Protein tolB Flags: Precursor [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|332987685|gb|AEF06668.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|366056513|gb|EHN20831.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|366062440|gb|EHN26672.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|366070647|gb|EHN34755.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|366074130|gb|EHN38194.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|366829750|gb|EHN56626.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|372206636|gb|EHP20140.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|381293439|gb|EIC34599.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|381299390|gb|EIC40464.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|381301483|gb|EIC42539.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|381309275|gb|EIC50113.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|381311165|gb|EIC51989.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|392784242|gb|EJA40849.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|392785719|gb|EJA42286.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|395984919|gb|EJH94093.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|395985654|gb|EJH94821.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|395993276|gb|EJI02371.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|395996443|gb|EJI05489.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|395999803|gb|EJI08818.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|396007506|gb|EJI16459.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|396009537|gb|EJI18467.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|396011931|gb|EJI20832.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|396015268|gb|EJI24150.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|396024239|gb|EJI33026.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|396025395|gb|EJI34172.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|396034369|gb|EJI43068.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|396036206|gb|EJI44877.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|396044068|gb|EJI52665.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|396047902|gb|EJI56469.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|396051904|gb|EJI60415.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|396057576|gb|EJI66048.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|396063008|gb|EJI71417.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|396071666|gb|EJI79991.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|396073342|gb|EJI81647.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|402515185|gb|EJW22599.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|402515746|gb|EJW23159.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|402518514|gb|EJW25894.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|402530119|gb|EJW37341.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|414022829|gb|EKT06291.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|414022919|gb|EKT06371.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|414024458|gb|EKT07835.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|414036648|gb|EKT19463.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|414037723|gb|EKT20477.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|414041298|gb|EKT23873.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|414051179|gb|EKT33303.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|414052391|gb|EKT34435.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|414056629|gb|EKT38437.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|414061310|gb|EKT42731.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|434939858|gb|ELL46602.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|434962481|gb|ELL55675.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|434963366|gb|ELL56479.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|434965371|gb|ELL58334.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|434974883|gb|ELL67193.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|434979681|gb|ELL71659.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|434983666|gb|ELL75457.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|434991906|gb|ELL83394.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|434994595|gb|ELL85936.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|435001150|gb|ELL92272.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|435008883|gb|ELL99693.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|435011198|gb|ELM01920.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|435014521|gb|ELM05086.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|435016780|gb|ELM07288.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|435028639|gb|ELM18718.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|435031250|gb|ELM21239.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|435031596|gb|ELM21559.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|435043863|gb|ELM33569.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|435047446|gb|ELM37033.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|435048587|gb|ELM38151.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|435054610|gb|ELM44045.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|435061918|gb|ELM51121.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|435066044|gb|ELM55144.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|435066770|gb|ELM55843.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|435072394|gb|ELM61319.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|435075204|gb|ELM64027.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|435084764|gb|ELM73332.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|435087776|gb|ELM76255.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|435091740|gb|ELM80115.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|435092336|gb|ELM80697.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|435101002|gb|ELM89156.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|435103508|gb|ELM91593.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|435114500|gb|ELN02301.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|435114711|gb|ELN02501.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|435118309|gb|ELN05975.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|435119467|gb|ELN07071.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|435124051|gb|ELN11526.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|435130500|gb|ELN17736.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|435140809|gb|ELN27754.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|435143719|gb|ELN30574.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|435144137|gb|ELN30991.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|435145391|gb|ELN32206.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|435155641|gb|ELN42172.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|435156828|gb|ELN43295.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|435160224|gb|ELN46513.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|435169453|gb|ELN55232.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|435171218|gb|ELN56861.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|435178423|gb|ELN63637.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|435183569|gb|ELN68536.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|435186721|gb|ELN71534.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|435189550|gb|ELN74175.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|435192960|gb|ELN77468.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|435200400|gb|ELN84385.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|435206590|gb|ELN90098.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|435207939|gb|ELN91370.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|435214613|gb|ELN97361.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|435216729|gb|ELN99204.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|435226341|gb|ELO07920.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|435233519|gb|ELO14516.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|435236320|gb|ELO17063.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|435249495|gb|ELO29316.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|435249531|gb|ELO29349.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|435257269|gb|ELO36562.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|435259565|gb|ELO38785.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|435263450|gb|ELO42500.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|435267998|gb|ELO46630.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|435275839|gb|ELO53885.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|435278531|gb|ELO56366.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|435283832|gb|ELO61353.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|435285598|gb|ELO62981.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|435289443|gb|ELO66404.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|435297361|gb|ELO73647.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|435305603|gb|ELO81057.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|435306937|gb|ELO82161.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|435311520|gb|ELO85652.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|435319805|gb|ELO92581.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|435327171|gb|ELO98938.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|435333771|gb|ELP04530.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|435336437|gb|ELP06369.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
gi|436416291|gb|ELP14199.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|436417536|gb|ELP15429.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|436420687|gb|ELP18547.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|444846815|gb|ELX71968.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|444852696|gb|ELX77771.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|444853634|gb|ELX78703.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|444858771|gb|ELX83746.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|444860817|gb|ELX85721.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|444869924|gb|ELX94483.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|444875964|gb|ELY00156.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|444881715|gb|ELY05733.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|444882530|gb|ELY06484.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|451910038|gb|AGF81844.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
Length = 430
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 TLAFTSDQAGRPQV-----YKMNINGGAAQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTAN 561
+ ++
Sbjct: 347 VMVSS 351
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGTKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQITDG---------RSNNTEPTWFPDSQTLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y + ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKMNINGGAAQRITWEGSQN 334
>gi|423139204|ref|ZP_17126842.1| Tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. houtenae str. ATCC BAA-1581]
gi|379051758|gb|EHY69649.1| Tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. houtenae str. ATCC BAA-1581]
Length = 431
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 246 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 302 TLAFTSDQAGRPQV-----YKMNINGGAAQRITW---EGSQNQDAD------VSSDGKFM 347
Query: 557 LFTAN 561
+ ++
Sbjct: 348 VMVSS 352
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGTKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I R + D + L FT+
Sbjct: 262 ALSKTG-----SLNLYVMDLASGQIRQITDG---------RSNNTEPTWFPDSQTLAFTS 307
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y + ++G +R+TW G +N
Sbjct: 308 DQAG------------RP--QVYKMNINGGAAQRITWEGSQN 335
>gi|332286926|ref|YP_004418837.1| TolB protein [Pusillimonas sp. T7-7]
gi|330430879|gb|AEC22213.1| TolB protein [Pusillimonas sp. T7-7]
Length = 436
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 45/180 (25%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE------FNGDIRQLTDGPWIDTMPSWSPK 494
P+ SPDGK L + S +G ++V +G+ F G+ ++ P+WSP
Sbjct: 210 PAWSPDGKRLAYVSFETGKPVVYVQTLSSGQRVPLANFKGN----------NSAPAWSPN 259
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
G +A +R D++ +Y I DGSGLRR+ S +D E ++ADG
Sbjct: 260 GQNLAIVLSR---DSIS--QIYTINADGSGLRRVMR-----SPMIDTEP----QYTADGG 305
Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP-GNQL 613
L+FT++ G P+ +Y V + G +R+T+NG N +PA P GN L
Sbjct: 306 SLIFTSDRGG------------SPH--IYKVPVSGGDAQRITFNGSYNISPAISPDGNSL 351
Score = 46.2 bits (108), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 71/150 (47%), Gaps = 24/150 (16%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++IA +DG +++ + + + +WSP K + Y S F++ + V + +S
Sbjct: 187 LQIADADGQNPQVMLRSKQSIISPAWSPDGKRLAYVS----FETGKPVVYVQTLS----- 237
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ + +P GNN+ P+ SP+G+ L R ++ +N + +G
Sbjct: 238 ----SGQRVPL------ANFKGNNSAPAWSPNGQNLAIVLSRDSISQIYT---INADGSG 284
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
+R++ P IDT P ++ G + F+S+R
Sbjct: 285 -LRRVMRSPMIDTEPQYTADGGSLIFTSDR 313
>gi|399156090|ref|ZP_10756157.1| WD40 domain-containing protein [SAR324 cluster bacterium SCGC
AAA001-C10]
Length = 453
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 76/177 (42%), Gaps = 44/177 (24%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR-QLTDGPWIDTMPSWSPKGD 496
+ P SPD + L+F S RSGH+ ++ L + I QLT G + P WSP G
Sbjct: 309 DTVPDLSPDNQHLIFVSDRSGHEQIYYL-----KLGTKISFQLTFGRGSSSDPVWSPDGT 363
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGD--VDRERIN--HVCFSAD 552
LIAFS SG +IH+ P D + R R N +S D
Sbjct: 364 LIAFSK------------------ISSGHSQIHLMDPFTGEDNFLTRGRFNSEQPSWSPD 405
Query: 553 GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN--GYENGTPAW 607
G ++F ++ V LY++ +DG+G RRLT +E G P+W
Sbjct: 406 GRQIVFVSSSTGV--------------DKLYIMFIDGTGRRRLTRTPRDFEEGGPSW 448
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G+++ P SPDG + F SGH + ++D GE N LT G + PSWSP G
Sbjct: 351 GSSSDPVWSPDGTLIAFSKISSGHSQIHLMDPFTGEDNF----LTRGRFNSEQPSWSPDG 406
Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
I F S+ D LY++ DG+G RR+
Sbjct: 407 RQIVFVSSSTGVDK-----LYIMFIDGTGRRRL 434
>gi|78358671|ref|YP_390120.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Desulfovibrio alaskensis G20]
gi|78221076|gb|ABB40425.1| Tol-Pal system beta propeller repeat protein TolB [Desulfovibrio
alaskensis G20]
Length = 441
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 104/245 (42%), Gaps = 49/245 (20%)
Query: 295 FIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA 354
F+ F +S GQ I + P +++L ++ PS+SPDG ++F+H E +
Sbjct: 175 FLSTLAFVSQSRNGQKDIWAVRPTGRDLRQLTAVQGIALSPSWSPDGRYVIFSHIGERSH 234
Query: 355 GIKIAKSDGSKRWTLIKDRTAFYN---------SWSPTEKHVIYTSTGP---------IF 396
+ + W I +RT ++ P + + + IF
Sbjct: 235 ALGV--------WDRINNRTQLIRFPGNTVIGPTFLPDNRVAVSLAVNGNPDIFLLNHIF 286
Query: 397 QSERATVQ----------------IARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAF 440
+ ++ Q +A VS +L + ++ V+ +++E N +
Sbjct: 287 KKQKVLEQSWGIDVSPSLDATGKKMAFVSSRLGNPNIFLKDLDSGSVRRISREGKYNTS- 345
Query: 441 PSCSPDGKFLVF-RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
P SPDG +V+ R GH+ +FV D V G +Q+T GP D MPS++P IA
Sbjct: 346 PDISPDGTLIVYSRRTGDGHR-IFVHDLVTGRE----KQITFGPGNDEMPSFAPDSYFIA 400
Query: 500 FSSNR 504
F+SNR
Sbjct: 401 FASNR 405
>gi|375000501|ref|ZP_09724841.1| Tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Infantis str. SARB27]
gi|375118207|ref|ZP_09763374.1| translocation protein TolB precursor [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|375122803|ref|ZP_09767967.1| translocation protein TolB precursor [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|383495536|ref|YP_005396225.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|417516913|ref|ZP_12179703.1| TolB protein precursor [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
gi|326622474|gb|EGE28819.1| translocation protein TolB precursor [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|326627053|gb|EGE33396.1| translocation protein TolB precursor [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|353075189|gb|EHB40949.1| Tol-Pal system beta propeller repeat protein TolB [Salmonella
enterica subsp. enterica serovar Infantis str. SARB27]
gi|353653046|gb|EHC94691.1| TolB protein precursor [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
gi|380462357|gb|AFD57760.1| tolB protein precursor [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
Length = 434
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 249 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDSQ 304
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 305 TLAFTSDQAGRPQV-----YKMNINGGAAQRITW---EGSQNQDAD------VSSDGKFM 350
Query: 557 LFTAN 561
+ ++
Sbjct: 351 VMVSS 355
Score = 42.7 bits (99), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 209 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGTKLAF 264
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I R + D + L FT+
Sbjct: 265 ALSKTG-----SLNLYVMDLASGQIRQITDG---------RSNNTEPTWFPDSQTLAFTS 310
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y + ++G +R+TW G +N
Sbjct: 311 DQAG------------RP--QVYKMNINGGAAQRITWEGSQN 338
>gi|432873428|ref|ZP_20093055.1| protein tolB [Escherichia coli KTE147]
gi|431404674|gb|ELG87922.1| protein tolB [Escherichia coli KTE147]
Length = 430
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAAQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSNG 353
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAAQRITWEGSQN 334
>gi|254420878|ref|ZP_05034602.1| Tol-Pal system beta propeller repeat protein TolB [Brevundimonas
sp. BAL3]
gi|196187055|gb|EDX82031.1| Tol-Pal system beta propeller repeat protein TolB [Brevundimonas
sp. BAL3]
Length = 457
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 33/169 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P S DG + F R G+ +++V+D + + + +LT P IDT PS+SP G I F
Sbjct: 258 PRFSNDGNKIAFSIIRGGNTDIYVMDLRSRQLS----RLTSDPGIDTSPSFSPDGSQIVF 313
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+S+R LYV++ DGSG R I G +S G + FT
Sbjct: 314 NSDRSGQAR-----LYVMRADGSGQRPISRGGGT---------YTAPAWSPTGNLIAFTK 359
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ G + V+ DGSG R L+ + +E G P W P
Sbjct: 360 SGGGRFSTG--------------VMNADGSGERILSSSYFEEG-PNWAP 393
Score = 46.6 bits (109), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 31/165 (18%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTG 393
PSFSPDG IVFN D A + + ++DGS + + + + +WSPT + +T +G
Sbjct: 302 PSFSPDGSQIVFNSDRSGQARLYVMRADGSGQRPISRGGGTYTAPAWSPTGNLIAFTKSG 361
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE--ETGNNAFPSCSPDGKFLV 451
R S + +D + +IL+ E G P+ +P+G++++
Sbjct: 362 G-----------GRFSTGVMNADGSGE-------RILSSSYFEEG----PNWAPNGRYVM 399
Query: 452 F-RSGRSGHKNLFVLD-----AVNGEFNGDIRQLTDGPWIDTMPS 490
F R R G L+ +D +NG P +DT PS
Sbjct: 400 FARQTRGGDTRLWTVDLSGRVVAQAGYNGRGTDPAWSPLLDTPPS 444
>gi|161504090|ref|YP_001571202.1| translocation protein TolB [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:- str. RSK2980]
gi|160865437|gb|ABX22060.1| hypothetical protein SARI_02188 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 434
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 249 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDSQ 304
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 305 TLAFTSDQAGRPQV-----YKMNINGGAAQRITW---EGSQNQDAD------VSSDGKFM 350
Query: 557 LFTAN 561
+ ++
Sbjct: 351 VMVSS 355
Score = 42.7 bits (99), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 209 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGTKLAF 264
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I R + D + L FT+
Sbjct: 265 ALSKTG-----SLNLYVMDLASGQIRQITDG---------RSNNTEPTWFPDSQTLAFTS 310
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y + ++G +R+TW G +N
Sbjct: 311 DQAG------------RP--QVYKMNINGGAAQRITWEGSQN 338
>gi|91792752|ref|YP_562403.1| translocation protein TolB [Shewanella denitrificans OS217]
gi|123356924|sp|Q12PE6.1|TOLB_SHEDO RecName: Full=Protein TolB; Flags: Precursor
gi|91714754|gb|ABE54680.1| TolB-like protein [Shewanella denitrificans OS217]
Length = 442
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 109/302 (36%), Gaps = 49/302 (16%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHV 387
+L G +F +V + + IA DG L++ + +WSP + +
Sbjct: 167 KLTGIRGAFLTRTAYVVVKQGQKAPYHLMIADYDGYNEQMLLRSPEPLMSPTWSPDGRRL 226
Query: 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
Y S F++ +A + + ++I + L G N PS SPDG
Sbjct: 227 AYVS----FENRKAEIFV---------------QDIYSQTRTLVSSYPGINGAPSFSPDG 267
Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP 507
K L + G ++V+D +++TD IDT PSW P G + F+S R
Sbjct: 268 KKLAVTLSKDGQPEVYVIDIATKA----AKRITDHYSIDTEPSWYPDGKSLLFTSERGGK 323
Query: 508 DNVEAFSLYVIKPDGSGLRRIHVAG---------PEGSGDVDRERIN---HVCFSADGEW 555
+ Y + D + R+ G P+G + R N H+
Sbjct: 324 PQI-----YSVHLDTGKVSRVTFEGEWNLGGSITPDGRSMIFVNRTNGKFHIARMDLATR 378
Query: 556 LLFTANLGAVMAEPVSWPN-QFQPYGD-------LYVVKLDGSGLRRLTWNGYENGTPAW 607
L + + P PN YG L V +DG RL E +PAW
Sbjct: 379 FLQVLSSTQLDESPSVAPNGTMVIYGTTHQGKQVLAAVSMDGRFKARLPVGQGEVKSPAW 438
Query: 608 HP 609
P
Sbjct: 439 SP 440
>gi|89053466|ref|YP_508917.1| translocation protein TolB [Jannaschia sp. CCS1]
gi|119371046|sp|Q28TS0.1|TOLB_JANSC RecName: Full=Protein TolB; Flags: Precursor
gi|88863015|gb|ABD53892.1| Twin-arginine translocation pathway signal [Jannaschia sp. CCS1]
Length = 445
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 104/260 (40%), Gaps = 53/260 (20%)
Query: 356 IKIAKSDGSKRWTLIKDRT-AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVS-FQLD 413
+ I DG+ L R+ +SP ++YTS ++S V I V+ Q
Sbjct: 192 LAIMDYDGANVQFLTDSRSIVLAPRFSPQGDRILYTS----YESGFPQVYIMDVATVQRR 247
Query: 414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
P E IP + + P SP G+ +VF + +++ LD G
Sbjct: 248 P-----LEAIPAETMTFS---------PRFSPSGQSVVFSLVDGSNTDIYSLDLATGTR- 292
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP 533
RQLT P I+T PS+SP G I F S+R + Y++ DG RR+
Sbjct: 293 ---RQLTQAPSIETAPSFSPDGSQIVFESDRSGNQQI-----YIMPADGGEARRVSA--- 341
Query: 534 EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR 593
G+G R +S G+++ FT Q + V++ DGS R
Sbjct: 342 -GTG-----RYGTPVWSPRGDYIAFT--------------KQENGRFHIGVMRTDGSDER 381
Query: 594 RLTWNGYENGTPAWHPGNQL 613
LT + + G P W P ++
Sbjct: 382 LLTSSFLDEG-PTWAPNGRV 400
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 39/173 (22%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG +VF S RSG++ ++++ A GE R+++ G P WSP+GD IAF
Sbjct: 305 PSFSPDGSQIVFESDRSGNQQIYIMPADGGE----ARRVSAGTGRYGTPVWSPRGDYIAF 360
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA----GPEGSGDVDRERINHVCFSADGEWL 556
+ + F + V++ DGS R + + GP ++ +G +
Sbjct: 361 TKQENG-----RFHIGVMRTDGSDERLLTSSFLDEGP--------------TWAPNGRVI 401
Query: 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+FT P +Y V + G L+R+ G + PAW P
Sbjct: 402 MFTRETPGDDGAPA-----------VYSVDISGRNLQRVATPGMAS-DPAWSP 442
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 31/164 (18%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNS--WSPTEKHVIYTST 392
PSFSPDG IVF D N I I +DG + + T Y + WSP ++ +T
Sbjct: 305 PSFSPDGSQIVFESDRSGNQQIYIMPADGGEARR-VSAGTGRYGTPVWSPRGDYIAFTKQ 363
Query: 393 GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452
++ R + + R D SD+ ++LT P+ +P+G+ ++F
Sbjct: 364 ----ENGRFHIGVMRT----DGSDE----------RLLTSSFLDEG--PTWAPNGRVIMF 403
Query: 453 RS---GRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
G G ++ +D +G Q P + + P+WSP
Sbjct: 404 TRETPGDDGAPAVYSVD-----ISGRNLQRVATPGMASDPAWSP 442
>gi|449095664|ref|YP_007428155.1| hypothetical protein C663_3081 [Bacillus subtilis XF-1]
gi|449029579|gb|AGE64818.1| hypothetical protein C663_3081 [Bacillus subtilis XF-1]
Length = 659
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 41/182 (22%)
Query: 441 PSCSPDGKFLVFRSGRSGHK-NLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
P SPDG+ L F S R G L+++ A GE R+LTD P+ + P WSP G+ I
Sbjct: 71 PRWSPDGRTLAFISDREGDAAQLYMMSAEGGE----ARKLTDIPYGVSKPIWSPDGESIL 126
Query: 500 FS----------------SNRHNPDNVEAFSLYVIKPDGSGLRR------IHVAGPEGS- 536
+ + + P V++ S K DG GL R + V+ G
Sbjct: 127 VTVSLGEGESIDDREKTEQDSYEPVEVQSLSY---KRDGKGLTRGAYAQLVLVSVKSGEM 183
Query: 537 GDVDRERINHV--CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR 594
++ + +H FS DG+WL+F+ANL + S P+ D+Y++ L+ ++
Sbjct: 184 KELTSHKADHGDPAFSPDGKWLVFSANL--TETDDASKPH------DVYMMSLESGDFKQ 235
Query: 595 LT 596
+T
Sbjct: 236 VT 237
>gi|224582567|ref|YP_002636365.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224467094|gb|ACN44924.1| translocation protein TolB precursor [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
Length = 434
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 249 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDSQ 304
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 305 TLAFTSDQAGRPQV-----YKMNINGGAAQRITW---EGSQNQDAD------VSSDGKFM 350
Query: 557 LFTAN 561
+ ++
Sbjct: 351 VMVSS 355
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 209 PAWSPDGSKLAYVTFESGRSALVIQTLANGS----VRQVASFPRHNGAPAFSPDGTKLAF 264
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I R + D + L FT+
Sbjct: 265 ALSKTG-----SLNLYVMDLASGQIRQITDG---------RSNNTEPTWFPDSQTLAFTS 310
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y + ++G +R+TW G +N
Sbjct: 311 DQAG------------RP--QVYKMNINGGAAQRITWEGSQN 338
>gi|417356524|ref|ZP_12132059.1| TolB protein, partial [Salmonella enterica subsp. enterica serovar
Give str. S5-487]
gi|353595928|gb|EHC53049.1| TolB protein, partial [Salmonella enterica subsp. enterica serovar
Give str. S5-487]
Length = 187
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 18/124 (14%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497
N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 3 NGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDSQT 58
Query: 498 IAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL 557
+AF+S++ V Y + +G +RI EGS + D + S+DG++++
Sbjct: 59 LAFTSDQAGRPQV-----YKMNINGGAAQRITW---EGSQNQDAD------VSSDGKFMV 104
Query: 558 FTAN 561
++
Sbjct: 105 MVSS 108
>gi|293397222|ref|ZP_06641495.1| tol-Pal system beta propeller repeat protein TolB [Serratia
odorifera DSM 4582]
gi|291420242|gb|EFE93498.1| tol-Pal system beta propeller repeat protein TolB [Serratia
odorifera DSM 4582]
Length = 430
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 65/128 (50%), Gaps = 19/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F +SG NL+V++ +G+ I QLTDG +T P+W P G
Sbjct: 245 HNGAPAFSPDGSRLAFALSKSGSLNLYVMNLGSGQ----ITQLTDGRSNNTEPTWFPDGQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ + Y I G +R+ EG + D E SADG++L
Sbjct: 301 SLAFTSDQGGRPQI-----YKISASGGAAQRLTW---EGGQNQDSE------VSADGKFL 346
Query: 557 -LFTANLG 563
+ T N G
Sbjct: 347 VMVTTNNG 354
Score = 45.4 bits (106), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L V NG IRQ+ P + P++SP G +AF
Sbjct: 205 PTWSPDGSKLAYVTFESGRSALVVQTLSNGA----IRQIASFPRHNGAPAFSPDGSRLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ N+ +L GSG G R + DG+ L FT+
Sbjct: 261 ALSKSGSLNLYVMNL------GSGQITQLTDG--------RSNNTEPTWFPDGQSLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ G +P +Y + G +RLTW G +N
Sbjct: 307 DQGG------------RP--QIYKISASGGAAQRLTWEGGQN 334
>gi|118581723|ref|YP_902973.1| WD40 domain-containing protein [Pelobacter propionicus DSM 2379]
gi|118504433|gb|ABL00916.1| WD-40 repeat-containing protein [Pelobacter propionicus DSM 2379]
Length = 435
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 35/170 (20%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SP+G + F S R G +F++ N + G +R+LT + P WSPKGD IA+
Sbjct: 299 PTWSPNGSQIAFVSDRLGKPQIFIM---NADGTG-VRRLTTNGGYNVNPRWSPKGDKIAY 354
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ F ++ I +GS ++ +G + +S DG + F+
Sbjct: 355 ARMEGG-----GFQIHTINVNGSDDTQLTSSGSS----------ENPAWSPDGRLIAFSG 399
Query: 561 NLGAVMAEPVSWPNQFQPYGD-LYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G+ GD +YV++ DGSG R++ G + PAW P
Sbjct: 400 RRGS---------------GDEIYVMRADGSGETRVSKVGGRSTQPAWQP 434
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 87/194 (44%), Gaps = 37/194 (19%)
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNG-DIRQLTDGPWIDTMPSWSPKGDLIAFSS-NRHNP 507
+ F S RSG+K + ++D ++G D RQLT I+ P +SP G I F+S RHNP
Sbjct: 176 IAFVSTRSGNKEIAIMD-----WDGHDTRQLTRNHSINLNPDFSPNGREIIFTSYKRHNP 230
Query: 508 DNVE---AFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT-ANLG 563
D + + V GL P+GS RI + S DG ++T A G
Sbjct: 231 DLYRRPLSSPVEVAVSHREGLNITGAWSPDGS------RI-ALALSKDGNSEIYTIARDG 283
Query: 564 ----------AVMAEPVSWPNQFQ--------PYGDLYVVKLDGSGLRRLTWNGYENGTP 605
A+ P PN Q ++++ DG+G+RRLT NG N P
Sbjct: 284 SSPVRLTSHPAIEISPTWSPNGSQIAFVSDRLGKPQIFIMNADGTGVRRLTTNGGYNVNP 343
Query: 606 AWHP-GNQLDLGKL 618
W P G+++ ++
Sbjct: 344 RWSPKGDKIAYARM 357
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 85/221 (38%), Gaps = 33/221 (14%)
Query: 313 PHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD 372
P PV V L + G++ SPDG I + N+ I DGS L
Sbjct: 236 PLSSPVEVAVSHREGLNITGAW---SPDGSRIALALSKDGNSEIYTIARDGSSPVRLTSH 292
Query: 373 -RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT 431
+WSP + + S ++ + + +D V+ LT
Sbjct: 293 PAIEISPTWSPNGSQIAFVSD-----------RLGKPQIFIMNADGTG-------VRRLT 334
Query: 432 KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491
G N P SP G + + G + ++ VNG D QLT + P+W
Sbjct: 335 TN-GGYNVNPRWSPKGDKIAYARMEGGGFQIHTIN-VNGS---DDTQLTSSGSSEN-PAW 388
Query: 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
SP G LIAFS R + D + YV++ DGSG R+ G
Sbjct: 389 SPDGRLIAFSGRRGSGDEI-----YVMRADGSGETRVSKVG 424
>gi|99082205|ref|YP_614359.1| translocation protein TolB [Ruegeria sp. TM1040]
gi|118574598|sp|Q1GE19.1|TOLB_SILST RecName: Full=Protein TolB; Flags: Precursor
gi|99038485|gb|ABF65097.1| TolB-like protein [Ruegeria sp. TM1040]
Length = 441
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG +VF S RSG L+V+ A GE ++++ G P WSP+GD IAF
Sbjct: 301 PSFSPDGSQIVFESDRSGTSQLYVMSASGGE----AKRISFGQGRYGTPVWSPRGDYIAF 356
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA----GPEGSGDVDRERINHVCFSADGEWL 556
+ N F + V++ DGS R + + GP S + A G+
Sbjct: 357 TKQ-----NAGRFHIGVMRTDGSEERLLTASFLDEGPTWSPNGRVIMFTRETQGASGQAR 411
Query: 557 LFTANLGAVMAEPVSWPN 574
L++ ++ +PV P+
Sbjct: 412 LYSVDISGRNLKPVKTPD 429
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 35/187 (18%)
Query: 428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT 487
++L+ + P +P+G+ +V+ + G+ +LF +D +N +G+ ++LT P I+T
Sbjct: 244 RVLSAGNGSMSFAPRFAPNGQTIVYSQSQGGNTDLFSMD-IN---SGNPQRLTSAPSIET 299
Query: 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV 547
PS+SP G I F S+R LYV+ G +RI G G R
Sbjct: 300 APSFSPDGSQIVFESDRSGTSQ-----LYVMSASGGEAKRISF----GQG-----RYGTP 345
Query: 548 CFSADGEWLLFTA-NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPA 606
+S G+++ FT N G +F + V++ DGS R LT + + G P
Sbjct: 346 VWSPRGDYIAFTKQNAG-----------RFH----IGVMRTDGSEERLLTASFLDEG-PT 389
Query: 607 WHPGNQL 613
W P ++
Sbjct: 390 WSPNGRV 396
>gi|329295948|ref|ZP_08253284.1| translocation protein TolB [Plautia stali symbiont]
Length = 431
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ RQ+TDG + T P+W P
Sbjct: 246 HNGAPAFSPDGSKLAFALSKTGSLNLYVIDLASGQ----TRQVTDGRYNSTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS-GDVDRERINHVCFSADG 553
+A++S D A +Y + +G +RI G + DV + V S+ G
Sbjct: 302 TLAYTS-----DQAGAPQIYKVNVNGGTPQRITWEGAQNQDADVSSDGKTMVMISSAG 354
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG + + + SG L V NG IRQ+ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKVAYVTFESGKSALVVQTLANGA----IRQVASYPRHNGAPAFSPDGSKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYVI R++ R + D + L +T+
Sbjct: 262 ALSKTG-----SLNLYVIDLASGQTRQVTDG---------RYNSTEPTWFPDSQTLAYTS 307
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +Y V ++G +R+TW G +N
Sbjct: 308 DQAGAP--------------QIYKVNVNGGTPQRITWEGAQN 335
>gi|381159806|ref|ZP_09869038.1| tol-pal system beta propeller repeat protein TolB [Thiorhodovibrio
sp. 970]
gi|380877870|gb|EIC19962.1| tol-pal system beta propeller repeat protein TolB [Thiorhodovibrio
sp. 970]
Length = 429
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 107/275 (38%), Gaps = 49/275 (17%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A +DG T++ + +WSP + + Y S F++ ++++ +
Sbjct: 180 LRVADADGFNPQTIVDSPDPIMSPAWSPDGRKLAYVS----FENRQSSIYV--------- 226
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+E+ + G N P+ SPDG + + G+ +++V++ + + +
Sbjct: 227 ------QELATGRRDKIASYPGINGSPAFSPDGSRMAMTLSKDGNPDVYVMNLGSRQLS- 279
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-- 532
+LTD IDT P+WSP G I F+S+R V Y + G RI G
Sbjct: 280 ---RLTDHYAIDTEPAWSPDGGTIYFTSDRGGQPQV-----YRVSASGGAAERISFEGDY 331
Query: 533 -------PEGSG------DVDRERINHVCFSADGEWLLFTANLG-----AVMAEPVSWPN 574
P G R RI LL + L A V + +
Sbjct: 332 NAAAEVAPNGRALALVTRTAGRFRIAFDQIGGGARRLLSSGPLDESPSFAPNGSMVIYAS 391
Query: 575 QFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
Q G L V + G +RLT + E PAW P
Sbjct: 392 QNNGRGVLAVTPIAGGSGQRLTQDAGEVREPAWSP 426
>gi|421468066|ref|ZP_15916636.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
multivorans ATCC BAA-247]
gi|421480495|ref|ZP_15928118.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
multivorans CF2]
gi|400221053|gb|EJO51542.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
multivorans CF2]
gi|400232682|gb|EJO62281.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
multivorans ATCC BAA-247]
Length = 419
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 24/150 (16%)
Query: 356 IKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG + R L +WSP+ V Y S F+ ++ V I
Sbjct: 166 LQISDSDGQNARIALSSTEPIISPAWSPSGTKVAYVS----FERKKPIVYI--------- 212
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++P + + ++ GNN+ P+ SPDG L +G+ ++ +++ NG G
Sbjct: 213 ------HDLPTGRRYMVSDQKGNNSAPAWSPDGNTLAVALSLTGNTQIYSVNS-NG---G 262
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
+R+LT IDT P +SP G I F+S+R
Sbjct: 263 GLRRLTQSSSIDTEPFYSPDGHWIYFTSDR 292
>gi|419957805|ref|ZP_14473871.1| translocation protein TolB [Enterobacter cloacae subsp. cloacae
GS1]
gi|388607963|gb|EIM37167.1| translocation protein TolB [Enterobacter cloacae subsp. cloacae
GS1]
Length = 412
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 227 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDIGSGQ----IRQVTDGRSNNTEPTWFPDSQ 282
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + SADG+ +
Sbjct: 283 NLAFTSDQAGRPQV-----YKVNINGGAAQRITW---EGSQNQDAD------VSADGKTM 328
Query: 557 LFTANLGA 564
+ + G
Sbjct: 329 VMVSTAGG 336
Score = 43.1 bits (100), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 187 PAWSPDGSKLAYVTFESGRSALVIQTLSNGA----VRQVASFPRHNGAPAFSPDGTKLAF 242
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ GSG + R+ + + + W +
Sbjct: 243 ALSKTG-----SLNLYVMD--------------IGSGQI-RQVTDGRSNNTEPTWFPDSQ 282
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
NL A ++ P +Y V ++G +R+TW G +N
Sbjct: 283 NL-AFTSDQAGRPQ-------VYKVNINGGAAQRITWEGSQN 316
>gi|449472419|ref|XP_004153588.1| PREDICTED: protein TolB-like [Cucumis sativus]
Length = 431
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 246 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDIGSGQ----IRQVTDGRSNNTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + SADG+ +
Sbjct: 302 NLAFTSDQAGRPQV-----YKVNINGGAAQRITW---EGSQNQDAD------VSADGKTM 347
Query: 557 LFTANLG 563
+ + G
Sbjct: 348 VMVSTAG 354
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKLAYVTFESGRSALVIQTLSNGA----VRQVASFPRHNGAPAFSPDGTKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ GSG + R+ + + + W +
Sbjct: 262 ALSKTG-----SLNLYVMD--------------IGSGQI-RQVTDGRSNNTEPTWFPDSQ 301
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
NL A ++ P +Y V ++G +R+TW G +N
Sbjct: 302 NL-AFTSDQAGRPQ-------VYKVNINGGAAQRITWEGSQN 335
>gi|339998659|ref|YP_004729542.1| tolB protein [Salmonella bongori NCTC 12419]
gi|339512020|emb|CCC29737.1| tolB protein precursor [Salmonella bongori NCTC 12419]
Length = 430
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 TLAFTSDQAGRPQV-----YKMNINGGAAQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTAN 561
+ ++
Sbjct: 347 VMVSS 351
Score = 42.4 bits (98), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGTKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQTLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y + ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKMNINGGAAQRITWEGSQN 334
>gi|335041518|ref|ZP_08534545.1| periplasmic component of the Tol biopolymer transport system
[Methylophaga aminisulfidivorans MP]
gi|333788132|gb|EGL54014.1| periplasmic component of the Tol biopolymer transport system
[Methylophaga aminisulfidivorans MP]
Length = 432
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 118/286 (41%), Gaps = 48/286 (16%)
Query: 345 VFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATV 403
+ N D ++I+ +DG+ T+++ R + SW+P + Y + F++ ++ +
Sbjct: 171 IKNADGSKRYALQISDADGANPRTVLQSRQPIMSPSWAPDGDRLAYVT----FENAKSEI 226
Query: 404 QIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLF 463
+ +S S + R G N+ P+ SPDGK L ++G+ ++
Sbjct: 227 FVQELSTGKRQSVASFR---------------GLNSAPAWSPDGKKLAVTLSKNGNPEIY 271
Query: 464 VLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS 523
VL+ G+ + R + IDT W P G I F+S+R + Y + DG
Sbjct: 272 VLELSTGKLS---RVTHNSQAIDTEAVWMPNGREILFTSDRGGRPQI-----YKVNADGG 323
Query: 524 GLRRIHVAGP-EGSGDVDRE-RINHVCFSADGEWLLFTANL--GAVMA--------EPVS 571
R+ G S D+ + R+ + +G++ + +L GAV P
Sbjct: 324 RAERVTFEGNYNASADISPDGRMMTMVHGVNGKFHIAVQDLETGAVQVLTETRADESPSF 383
Query: 572 WPN--------QFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
PN + + G L V +DG +RL +G PAW P
Sbjct: 384 APNGRMILYATEQKGRGVLAAVSVDGRIKQRLGESGSAVREPAWSP 429
>gi|261414610|ref|YP_003248293.1| TolB domain-containing protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|385789594|ref|YP_005820717.1| tol-pal system beta propeller repeat protein TolB [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|261371066|gb|ACX73811.1| TolB domain protein [Fibrobacter succinogenes subsp. succinogenes
S85]
gi|302325965|gb|ADL25166.1| tol-pal system beta propeller repeat protein TolB [Fibrobacter
succinogenes subsp. succinogenes S85]
Length = 424
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 33/171 (19%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
N PS SP ++F S R G ++ + G+ D+R++T + SWSP+GD
Sbjct: 277 NQVSPSWSPFASEVLFTSDRGGSPQVYAV----GKDGTDVRRITYMGHYNERASWSPEGD 332
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
I ++S N+ Y DG+ + I + G+ + H +S DG+ +
Sbjct: 333 RIVYTSMDDGKMNI-----YTCALDGTDI--IQLTSNAGNNE-------HPTWSPDGKLI 378
Query: 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
F ++ G +Q +Y+++ DGSG+ R+T NG EN +P W
Sbjct: 379 AFASDRGG----------NYQ----IYIMRKDGSGVTRIT-NGSENTSPTW 414
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 43/175 (24%)
Query: 328 LRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGS--KRWTLIKDRTAFYN---SWSP 382
L+ N PS+SP ++F D + + DG+ +R T + YN SWSP
Sbjct: 274 LKSNQVSPSWSPFASEVLFTSDRGGSPQVYAVGKDGTDVRRITYM----GHYNERASWSP 329
Query: 383 TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPC-----DVKILTKEETGN 437
++YTS DD C D+ LT GN
Sbjct: 330 EGDRIVYTSM-----------------------DDGKMNIYTCALDGTDIIQLT-SNAGN 365
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
N P+ SPDGK + F S R G+ ++++ + + ++T+G +T P+WS
Sbjct: 366 NEHPTWSPDGKLIAFASDRGGNYQIYIMR----KDGSGVTRITNGSE-NTSPTWS 415
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 28/125 (22%)
Query: 489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVC 548
PSWSP + F+S+R V Y + DG+ +RRI G
Sbjct: 281 PSWSPFASEVLFTSDRGGSPQV-----YAVGKDGTDVRRITYMGHYN---------ERAS 326
Query: 549 FSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWH 608
+S +G+ +++T+ M ++Y LDG+ + +LT N N P W
Sbjct: 327 WSPEGDRIVYTSMDDGKM--------------NIYTCALDGTDIIQLTSNAGNNEHPTWS 372
Query: 609 PGNQL 613
P +L
Sbjct: 373 PDGKL 377
>gi|260428940|ref|ZP_05782917.1| Tol-Pal system beta propeller repeat protein TolB [Citreicella sp.
SE45]
gi|260419563|gb|EEX12816.1| Tol-Pal system beta propeller repeat protein TolB [Citreicella sp.
SE45]
Length = 440
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 77/171 (45%), Gaps = 35/171 (20%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG +VF S RSG + L+V+ A GE +++ G P WSP+GD+IAF
Sbjct: 301 PSFSPDGSRIVFESDRSGTQQLYVMPAGGGEAT----RISFGQGRYGTPVWSPRGDMIAF 356
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT- 559
+ F + V++ DGS R+ A P G ++ +G L+F+
Sbjct: 357 TKQHQG-----RFHIGVMRTDGS-EERLLTASPLDEGP---------TWAPNGRVLMFSR 401
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL-TWNGYENGTPAWHP 609
LGA Q LY V + G L R+ T G + P+W P
Sbjct: 402 ETLGA------------QGTSSLYTVDVAGRKLTRVRTPAGASD--PSWGP 438
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 73/173 (42%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG +V+ + + +++++D +G QLT P I+T PS+SP G I F
Sbjct: 257 PRFSPDGSRVVYSVTQGSNTDIYMMDVASGAST----QLTATPAIETAPSFSPDGSRIVF 312
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LYV+ G RI G G R +S G+ + FT
Sbjct: 313 ESDRSGTQQ-----LYVMPAGGGEATRISF----GQG-----RYGTPVWSPRGDMIAFT- 357
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
Q Q + V++ DGS R LT + + G P W P ++
Sbjct: 358 -------------KQHQGRFHIGVMRTDGSEERLLTASPLDEG-PTWAPNGRV 396
>gi|417839359|ref|ZP_12485546.1| Protein tolB [Haemophilus haemolyticus M19107]
gi|417840472|ref|ZP_12486605.1| Protein tolB [Haemophilus haemolyticus M19107]
gi|341948187|gb|EGT74820.1| Protein tolB [Haemophilus haemolyticus M19107]
gi|341953404|gb|EGT79911.1| Protein tolB [Haemophilus haemolyticus M19107]
Length = 427
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 90/204 (44%), Gaps = 42/204 (20%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A DG ++ + + + +WSP + + Y S F+++++ + +
Sbjct: 184 VRVADYDGYNQFIVNRSSQPIMSPAWSPDGQRLAYVS----FENKKSQLVV--------- 230
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+++ + + G+N P+ SPDG L F S + G N++V+++ G
Sbjct: 231 ------QDLNSGARKVVASFPGHNGAPAFSPDGSRLAFASSQDGSLNIYVMNS----HGG 280
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
QLT G +T PSWSP G I F+S+R V Y + +G G + G
Sbjct: 281 APTQLTRGAGNNTEPSWSPDGSSILFTSDRSGSPQV-----YRMSANGGGATPV---GGR 332
Query: 535 GSGDVDRERINHVCFSADGEWLLF 558
GS + SADG+ L+
Sbjct: 333 GSAQI----------SADGKTLVM 346
>gi|334122821|ref|ZP_08496856.1| tol-Pal system beta propeller repeat protein TolB [Enterobacter
hormaechei ATCC 49162]
gi|333391688|gb|EGK62798.1| tol-Pal system beta propeller repeat protein TolB [Enterobacter
hormaechei ATCC 49162]
Length = 431
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 246 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDIGSGQ----IRQVTDGRSNNTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + SADG+ +
Sbjct: 302 NLAFTSDQAGRPQV-----YKVNINGGAAQRITW---EGSQNQDAD------VSADGKTM 347
Query: 557 LFTANLG 563
+ + G
Sbjct: 348 VMVSTAG 354
Score = 42.4 bits (98), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKLAYVTFESGRSALVIQTLSNGA----VRQVASFPRHNGAPAFSPDGTKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ GSG + R+ + + + W +
Sbjct: 262 ALSKTG-----SLNLYVMD--------------IGSGQI-RQVTDGRSNNTEPTWFPDSQ 301
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
NL A ++ P +Y V ++G +R+TW G +N
Sbjct: 302 NL-AFTSDQAGRPQ-------VYKVNINGGAAQRITWEGSQN 335
>gi|344208556|ref|YP_004793697.1| protein tolB [Stenotrophomonas maltophilia JV3]
gi|386719668|ref|YP_006185994.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins
[Stenotrophomonas maltophilia D457]
gi|343779918|gb|AEM52471.1| Protein tolB [Stenotrophomonas maltophilia JV3]
gi|384079230|emb|CCH13828.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins
[Stenotrophomonas maltophilia D457]
Length = 439
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 29/178 (16%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A SDG T+++ + SWSP + Y S F+ + + I
Sbjct: 186 LMVADSDGYNPQTIVRSAEPLLSPSWSPDGSKLAYVS----FERGNSAIYI--------- 232
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ I + L G N+ P+ SPDG+ L RSG+ ++V+D + +
Sbjct: 233 ------QNIGTGARELVTSFRGINSAPAFSPDGRKLALTLSRSGNPEIYVMDLGSKQLT- 285
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
QLT+ IDT P+W+P G + F+S+R V Y + G R+ G
Sbjct: 286 ---QLTNHFAIDTEPTWAPDGSAVYFTSDRGGRPQV-----YKVGAGGGSAERVTFQG 335
>gi|86157087|ref|YP_463872.1| TolB-like protein [Anaeromyxobacter dehalogenans 2CP-C]
gi|119371034|sp|Q2INP9.1|TOLB_ANADE RecName: Full=Protein TolB; Flags: Precursor
gi|85773598|gb|ABC80435.1| TolB-like protein [Anaeromyxobacter dehalogenans 2CP-C]
Length = 434
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 115/282 (40%), Gaps = 61/282 (21%)
Query: 341 GGLIVFNHDFELNAG----IKIAKSDGSKRWTL---IKDRTAFYNSWSPTEKHVIYTSTG 393
GGL H +E+ AG +K+ + DG+ +L + D Y YT
Sbjct: 116 GGLEGELHLYEVRAGREVLVKLLRVDGADARSLAHRMADEIVRY-----------YTREP 164
Query: 394 PIFQSERATVQIARVSFQL--DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451
IF + A ++ R +++L D N++ + + IL P+ PDG+ ++
Sbjct: 165 GIFATRIAAIRRGRGTWELVTQDMDGGNQQVLLSERSILMS--------PAWRPDGREIL 216
Query: 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVE 511
S RSG L+ + F RQ + +SP G IAF+ + N +
Sbjct: 217 VTSYRSGRPELWAYRFSDRAFRPLGRQRNAFGGV-----YSPDGSRIAFTVSEGNVTD-- 269
Query: 512 AFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS 571
L+V+ DGSG R++ + + DV +S DG + F ++
Sbjct: 270 ---LWVMSADGSGARKLT---SDPAIDV------SPTWSPDGRRIAFVSDRSGTP----- 312
Query: 572 WPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+YV+ DGSG RRLT+ G N TP W P L
Sbjct: 313 ---------QIYVMGADGSGARRLTFQGNYNQTPQWSPRGDL 345
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 41/196 (20%)
Query: 362 DGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVS----------- 409
DG + L+ +R+ + +W P + ++ TS ++S R + R S
Sbjct: 189 DGGNQQVLLSERSILMSPAWRPDGREILVTS----YRSGRPELWAYRFSDRAFRPLGRQR 244
Query: 410 --FQLDPSDDNNR------EEIPCDVKILTKEETGNNAF---------PSCSPDGKFLVF 452
F S D +R E D+ +++ + +G P+ SPDG+ + F
Sbjct: 245 NAFGGVYSPDGSRIAFTVSEGNVTDLWVMSADGSGARKLTSDPAIDVSPTWSPDGRRIAF 304
Query: 453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA 512
S RSG ++V+ G R+LT + P WSP+GDLIAF++ D +
Sbjct: 305 VSDRSGTPQIYVM----GADGSGARRLTFQGNYNQTPQWSPRGDLIAFTAR----DERKV 356
Query: 513 FSLYVIKPDGSGLRRI 528
F ++V+ PD + RI
Sbjct: 357 FDVFVVAPDSGAISRI 372
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 34/166 (20%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGS--KRWTLIKDRTAFYNS---WSPTEKHVIY 389
P++SPDG I F D I + +DGS +R T + YN WSP + +
Sbjct: 293 PTWSPDGRRIAFVSDRSGTPQIYVMGADGSGARRLTFQGN----YNQTPQWSPRGDLIAF 348
Query: 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF 449
T+ + ER + F + P + +T+++ N PS +P+G+
Sbjct: 349 TA-----RDERKVFDV----FVVAPDSGA--------ISRITQDQGRTNEEPSWAPNGRL 391
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQ--LTDGPWIDTMPSWSP 493
++FR+ R+G L V DA GD RQ +T G P+W P
Sbjct: 392 MIFRTDRNGGIQLVVSDA-----RGD-RQTPVTSGKTDLAAPAWGP 431
>gi|107021875|ref|YP_620202.1| translocation protein TolB [Burkholderia cenocepacia AU 1054]
gi|118574572|sp|Q1BYS6.1|TOLB_BURCA RecName: Full=Protein TolB; Flags: Precursor
gi|105892064|gb|ABF75229.1| TolB-like protein [Burkholderia cenocepacia AU 1054]
Length = 431
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 24/150 (16%)
Query: 356 IKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG + R L +WSP+ V Y S F+ ++ V I
Sbjct: 178 LQISDSDGQNARIALSSTEPIISPAWSPSSTKVAYVS----FERKKPIVYI--------- 224
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++P + + ++ GNN+ P+ SPD L +G+ ++ ++A NG G
Sbjct: 225 ------HDLPTGRRYMVSDQKGNNSAPAWSPDSNTLAVALSLTGNTQIYTVNA-NG---G 274
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
+R+LT IDT P +SP G I F+S+R
Sbjct: 275 GLRRLTQSSSIDTEPFYSPDGRWIYFTSDR 304
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 16/123 (13%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+++ F S R G ++ + A GE G +++T +T P SP G L+A+
Sbjct: 289 PFYSPDGRWIYFTSDRGGAPQIYRMPA-QGESAGAAQRVTFTGSYNTSPRVSPDGKLLAY 347
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S F LYV + + + +R+ F+A+G+++L+
Sbjct: 348 ISRTGG-----GFKLYV--------QDLQTGAANAITNTNRDE--SPSFAANGQYVLYAT 392
Query: 561 NLG 563
G
Sbjct: 393 QSG 395
>gi|260061328|ref|YP_003194408.1| WD40-like beta Propeller protein [Robiginitalea biformata HTCC2501]
gi|88785460|gb|EAR16629.1| WD40-like Beta Propeller protein [Robiginitalea biformata HTCC2501]
Length = 368
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 22/141 (15%)
Query: 476 IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI-HVAGPE 534
+ QLTD P D + SP+GD I F+S+R LY + DGS +R+I G +
Sbjct: 167 VDQLTDEPGYDAEATVSPQGDRIVFTSDRSGD-----LELYTMNLDGSDVRQITDELGYD 221
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQF-----QPYG-DLYVVKLD 588
G FS DG ++F A+ AE + + QP +L++ D
Sbjct: 222 GG----------AFFSPDGTQIIFRASRPETEAEIAEYKDLLSRGLVQPTEMELFICNAD 271
Query: 589 GSGLRRLTWNGYENGTPAWHP 609
GS LR+LT+ G N +P +HP
Sbjct: 272 GSDLRQLTFLGNANWSPFFHP 292
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 38/192 (19%)
Query: 433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
+E G +A + SP G +VF S RSG L+ ++ ++G D+RQ+TD D +S
Sbjct: 172 DEPGYDAEATVSPQGDRIVFTSDRSGDLELYTMN-LDGS---DVRQITDELGYDGGAFFS 227
Query: 493 PKGDLIAFSSNRHNPDNVEA---------------FSLYVIKPDGSGLRRIHVAGPEGSG 537
P G I F ++R + A L++ DGS LR++ G
Sbjct: 228 PDGTQIIFRASRPETEAEIAEYKDLLSRGLVQPTEMELFICNADGSDLRQLTFLGNANWS 287
Query: 538 DVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW 597
F DG+ +LF++N + P +LY++ DG+GL R+T
Sbjct: 288 PF---------FHPDGDKILFSSNFESEGGFPF----------NLYLIGTDGTGLERVTH 328
Query: 598 NGYENGTPAWHP 609
+ P + P
Sbjct: 329 GQTFDAFPVFSP 340
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 18/181 (9%)
Query: 336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTS 391
+ SP G IVF D + + DGS + D AF+ SP +I+ +
Sbjct: 181 TVSPQGDRIVFTSDRSGDLELYTMNLDGSDVRQITDELGYDGGAFF---SPDGTQIIFRA 237
Query: 392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIPC-----DVKILTKEETGNNAFPSCSPD 446
+ P ++E A + + P++ E C D++ LT N + P PD
Sbjct: 238 SRPETEAEIAEYKDLLSRGLVQPTE---MELFICNADGSDLRQLTFLGNANWS-PFFHPD 293
Query: 447 GKFLVFRSGRSGHKNL-FVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH 505
G ++F S F L + + G + ++T G D P +SP G +AFSSNR+
Sbjct: 294 GDKILFSSNFESEGGFPFNLYLIGTDGTG-LERVTHGQTFDAFPVFSPDGKYLAFSSNRN 352
Query: 506 N 506
N
Sbjct: 353 N 353
>gi|424817057|ref|ZP_18242208.1| translocation protein TolB [Escherichia fergusonii ECD227]
gi|325498077|gb|EGC95936.1| translocation protein TolB [Escherichia fergusonii ECD227]
Length = 431
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 246 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS-GDVDRERINHVCFSADG 553
+AF+S++ V Y + +G +RI G + DV + V S+DG
Sbjct: 302 NLAFTSDQAGRPQV-----YKVNINGGAPQRITWEGTQNQDADVSSDGKFMVMVSSDG 354
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG IR++ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKLAYVTFESGRSELVIQTLANGA----IRKVASFPRHNGAPAFSPDGSKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I R + D + L FT+
Sbjct: 262 ALSKTG-----SLNLYVMDLASGQIRQITDG---------RSNNTEPTWFPDSQNLAFTS 307
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 308 DQAG------------RP--QVYKVNINGGAPQRITWEGTQN 335
>gi|221201006|ref|ZP_03574046.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
multivorans CGD2M]
gi|221206542|ref|ZP_03579555.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
multivorans CGD2]
gi|221214396|ref|ZP_03587367.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
multivorans CGD1]
gi|221165653|gb|EED98128.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
multivorans CGD1]
gi|221173851|gb|EEE06285.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
multivorans CGD2]
gi|221178856|gb|EEE11263.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
multivorans CGD2M]
Length = 431
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 24/150 (16%)
Query: 356 IKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG + R L +WSP+ V Y S F+ ++ V I
Sbjct: 178 LQISDSDGQNARIALSSTEPIISPAWSPSGTKVAYVS----FERKKPIVYI--------- 224
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++P + + ++ GNN+ P+ SPDG L +G+ ++ +++ NG G
Sbjct: 225 ------HDLPTGRRYMVSDQKGNNSAPAWSPDGNTLAVALSLTGNTQIYSVNS-NG---G 274
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
+R+LT IDT P +SP G I F+S+R
Sbjct: 275 GLRRLTQSSSIDTEPFYSPDGHWIYFTSDR 304
>gi|443629568|ref|ZP_21113891.1| putative Amidohydrolase [Streptomyces viridochromogenes Tue57]
gi|443336926|gb|ELS51245.1| putative Amidohydrolase [Streptomyces viridochromogenes Tue57]
Length = 1064
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 65/122 (53%), Gaps = 10/122 (8%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG LV + R G +L++L + G +RQLTDGPW D P+WSP G IAF
Sbjct: 98 PQFSPDGSRLVVCAYRDGGFHLWIL---RPDGTG-LRQLTDGPWDDRGPAWSPDGTRIAF 153
Query: 501 SSNRHNPDNVEA--FSLYVIKPDGSGLRRIH-VAGPEGSG-DVDRERINHVCFSADGEWL 556
+S R D V + ++V+ L R+ G +G G D D E + +S DGE +
Sbjct: 154 ASERGG-DTVTGAPYRVWVVDVRTGALTRLTGRPGQQGPGQDTDWED-SDPTWSPDGERV 211
Query: 557 LF 558
LF
Sbjct: 212 LF 213
>gi|421594228|ref|ZP_16038680.1| translocation protein TolB [Rhizobium sp. Pop5]
gi|403699691|gb|EJZ17064.1| translocation protein TolB [Rhizobium sp. Pop5]
Length = 436
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 74/173 (42%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + + N++ +D + IDT PS+SP G+ +AF
Sbjct: 253 PRFSPDGQKVIMSLQQDANSNIYTMDLRSRTTTRLTSTAA----IDTSPSYSPDGNRVAF 308
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGSG RI G G R + +S G+ + FT
Sbjct: 309 ESDRGGQSQI-----YVMNADGSGQTRISF----GDG-----RYSTPVWSPRGDLIAFTK 354
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT G+ N P W P ++
Sbjct: 355 QSGGKFS--------------IGVMKPDGSGERILT-TGFHNEGPTWAPNGRV 392
>gi|373459247|ref|ZP_09551014.1| peptidase S41 [Caldithrix abyssi DSM 13497]
gi|371720911|gb|EHO42682.1| peptidase S41 [Caldithrix abyssi DSM 13497]
Length = 1041
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 123/325 (37%), Gaps = 84/325 (25%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGS--KRWTLIKDRTAFYNSWSPTEKHVIYTST 392
P +SPDG I F+ D N + + DG +R T + WSP +++++ S
Sbjct: 70 PKWSPDGRRIAFSSDRYGNDDVFVIDLDGGSLRRLTFFTNPDVV-QQWSPDGQNILFGSR 128
Query: 393 GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452
+ +++Q+ E IP E T SPDG+FL+F
Sbjct: 129 RDFYYHRNP------LTYQVPVEGGTPFEVIP--------EYTQQG---RLSPDGQFLLF 171
Query: 453 RSGR----------SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
GR S + ++F+ D + RQLT+ D P W G LI F S
Sbjct: 172 VRGRVDVFRKGYRGSSNTDIFIYDFKKQTY----RQLTEFEGNDLFPLWGLDGKLIYFVS 227
Query: 503 NRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT--- 559
R +L+ + PDGS +++ +G I + SADG W+ F
Sbjct: 228 ERDG-----VMNLWQMNPDGSQKKQLTFFKEDG--------IRYPEISADGAWITFERLF 274
Query: 560 ------ANLGAV----MAEPVSW---PNQFQPY---------------------GDLYVV 585
N G + PV + P +Q Y G+++V+
Sbjct: 275 DIYRFDVNSGRAQKIELQLPVDYVQNPYTYQKYSGEAREMAISADGKEIAFVIRGEIFVI 334
Query: 586 KLDGSGLRRLTWNGYENGTPAWHPG 610
DG L ++T + + + W+PG
Sbjct: 335 NKDGRFLNQITQSPWRDEDIDWYPG 359
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 13/88 (14%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG+ + F S +++++ A G+ R +T P D P WSP G IAF
Sbjct: 30 PAPSPDGQQIAF----SFQGDIWIMPAAGGQ----ARCITGNPGYDYAPKWSPDGRRIAF 81
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
SS+R+ D+V +VI DG LRR+
Sbjct: 82 SSDRYGNDDV-----FVIDLDGGSLRRL 104
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 435 TGNNAF---PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491
TGN + P SPDG+ + F S R G+ ++FV+D ++G G +R+LT D + W
Sbjct: 61 TGNPGYDYAPKWSPDGRRIAFSSDRYGNDDVFVID-LDG---GSLRRLTFFTNPDVVQQW 116
Query: 492 SPKGDLIAFSSNR 504
SP G I F S R
Sbjct: 117 SPDGQNILFGSRR 129
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 97/253 (38%), Gaps = 27/253 (10%)
Query: 323 KELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGS--KRWTLIKDRTAFYNSW 380
++L N FP + DG LI F + + + DGS K+ T K+ Y
Sbjct: 202 RQLTEFEGNDLFPLWGLDGKLIYFVSERDGVMNLWQMNPDGSQKKQLTFFKEDGIRYPEI 261
Query: 381 SPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDV---KILTKEETGN 437
S + + I++ + + + ++ QL P D ++ +G
Sbjct: 262 SADGAWITFERLFDIYRFDVNSGRAQKIELQL-----------PVDYVQNPYTYQKYSGE 310
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497
+ S DGK + F +FV++ +G F + Q+T PW D W P D
Sbjct: 311 AREMAISADGKEIAFVI----RGEIFVINK-DGRF---LNQITQSPWRDEDIDWYPGRDT 362
Query: 498 IAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL 557
+AF S+R N+ + +Y P L R E R+ + FS DG WL
Sbjct: 363 LAFVSDRAGNRNI--YLIYSDDPQQRALSRATRFKMERLTASPRDEFSP-RFSPDGRWLA 419
Query: 558 FTANLGAVMAEPV 570
+ G ++ +
Sbjct: 420 YVRGKGDLIVREM 432
>gi|118574585|sp|Q1GYT1.2|TOLB_METFK RecName: Full=Protein TolB; Flags: Precursor
Length = 433
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 111/284 (39%), Gaps = 67/284 (23%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A SDG T++ + WSP + Y S F+ ++ + +
Sbjct: 183 LQVADSDGYNPQTVVSSAEPIISPVWSPDGTKLAYVS----FEKKKPIIYV--------- 229
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ + + + GNN+ P+ SPDGK L + + ++ ++N + G
Sbjct: 230 ------QSLVSGQRTVLANFKGNNSAPAWSPDGKRLAIVLTHAANSQIY---SINADGTG 280
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV--------EAFSL-----YVI--- 518
++QLT IDT P+WSP G I F+S+R + EA + YV+
Sbjct: 281 -LQQLTRTTAIDTEPTWSPDGRYIYFTSDRGGSPQIYRMPSSGGEASRMTFEGSYVVSPR 339
Query: 519 -KPDGSGLRRIHVAGPE--------GSGDV----DRERINHVCFSADGEWLLFTANLGAV 565
PDG L I G + +G V D + F+ +G LL +G
Sbjct: 340 LSPDGKSLAYIRRDGGQFRVALQDLQTGQVQVLSDGPKDESPSFAPNGRMLLHATRVGG- 398
Query: 566 MAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G L V DG +RL+ +G + PAW P
Sbjct: 399 -------------RGALAAVSADGRVKQRLSESGGDVREPAWGP 429
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 36/211 (17%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN--SWSPTEKHVI 388
N S P++SPDG + N+ I +DG+ L + TA +WSP +++
Sbjct: 246 NNSAPAWSPDGKRLAIVLTHAANSQIYSINADGTGLQQLTRT-TAIDTEPTWSPDGRYIY 304
Query: 389 YTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGK 448
+TS + QI R+ PS + + + P SPDGK
Sbjct: 305 FTS------DRGGSPQIYRM-----PSSGGEASRMTFEGSYVVS--------PRLSPDGK 345
Query: 449 FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD 508
L + G + + D G+ ++ L+DGP D PS++P G ++ ++
Sbjct: 346 SLAYIRRDGGQFRVALQDLQTGQ----VQVLSDGPK-DESPSFAPNGRMLLHATRVGGRG 400
Query: 509 NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV 539
+ A S DG +R+ E GDV
Sbjct: 401 ALAAVS-----ADGRVKQRLS----ESGGDV 422
>gi|423015666|ref|ZP_17006387.1| translocation protein TolB [Achromobacter xylosoxidans AXX-A]
gi|338781339|gb|EGP45731.1| translocation protein TolB [Achromobacter xylosoxidans AXX-A]
Length = 418
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 28/178 (15%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A +DG ++ R + +WSP + Y S F+S + V +
Sbjct: 168 LQVADADGQNPQVALRSREPIISPAWSPDGSKLAYVS----FESGKPVVYV--------- 214
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ ++ GNN+ P SPDG L R G ++++ A G
Sbjct: 215 ------HTLATSARVPVANFKGNNSAPGWSPDGTQLAVALTRDGLSQIYIVSAAGGS--- 265
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
+++++T P IDT PS++P G I F+S+R + Y DG RR+ G
Sbjct: 266 NMKRVTRSPGIDTEPSFTPDGRSIIFTSDRSGGPQI-----YQTGLDGGDARRLTFNG 318
>gi|309792445|ref|ZP_07686910.1| WD40 domain-containing protein [Oscillochloris trichoides DG-6]
gi|308225517|gb|EFO79280.1| WD40 domain-containing protein [Oscillochloris trichoides DG6]
Length = 627
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 113/291 (38%), Gaps = 44/291 (15%)
Query: 244 HCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRG 303
H + PA L V +RR N FR I YD+ Y+ SAN+ F
Sbjct: 361 HSWDPAMLT----LLVDSRRTNAQFRQIYEYDVNA-----IYSGDFSANA-------FVR 404
Query: 304 ESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG 363
T T P P A L N S+SPDG IVF D + I
Sbjct: 405 RLTYTDGTQP--PPNAPYPGYLPNNTANNYNASYSPDGTKIVFVTDRWGGQELFIMTPTA 462
Query: 364 SKRWTLIKDRTAFYNS--WSPTEKHVIYTSTG----PIFQSERATVQIARVSFQLDPSDD 417
+ T + + S WSP +H+ +TS I++ E A S +
Sbjct: 463 NSP-TQLTGQGCINESPTWSPNGRHLYWTSNCDGDFDIYRGEIAYNYEGTWSVDARLVNV 521
Query: 418 NNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR 477
N D + FP SPDGK + F S R G+ ++ + + +G+ +R
Sbjct: 522 VNLTNNNVDDR-----------FPRVSPDGKTVAFGSNRDGNWEIYTMSSASGD---TLR 567
Query: 478 QLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
+LT D P+WS G +AF+S+R F +Y + DG+ +I
Sbjct: 568 RLTSNNATDDSPTWSADGSKLAFASDRDG-----DFEIYTMTLDGNNTTQI 613
>gi|218549687|ref|YP_002383478.1| translocation protein TolB [Escherichia fergusonii ATCC 35469]
gi|226705883|sp|B7LKL8.1|TOLB_ESCF3 RecName: Full=Protein TolB; Flags: Precursor
gi|218357228|emb|CAQ89863.1| periplasmic protein [Escherichia fergusonii ATCC 35469]
Length = 430
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS-GDVDRERINHVCFSADG 553
+AF+S++ V Y + +G +RI G + DV + V S+DG
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITWEGTQNQDADVSSDGKFMVMVSSDG 353
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG IR++ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSELVIQTLANGA----IRKVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQITDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGTQN 334
>gi|161525756|ref|YP_001580768.1| translocation protein TolB [Burkholderia multivorans ATCC 17616]
gi|189349522|ref|YP_001945150.1| translocation protein TolB [Burkholderia multivorans ATCC 17616]
gi|226705870|sp|A9AFQ0.1|TOLB_BURM1 RecName: Full=Protein TolB; Flags: Precursor
gi|160343185|gb|ABX16271.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
multivorans ATCC 17616]
gi|189333544|dbj|BAG42614.1| TolB protein [Burkholderia multivorans ATCC 17616]
Length = 431
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 24/150 (16%)
Query: 356 IKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG + R L +WSP+ V Y S F+ ++ V I
Sbjct: 178 LQISDSDGQNARIALSSTEPIISPAWSPSGTKVAYVS----FERKKPIVYI--------- 224
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++P + + ++ GNN+ P+ SPDG L +G+ ++ +++ NG G
Sbjct: 225 ------HDLPTGRRYMVSDQKGNNSAPAWSPDGNTLAVALSLTGNTQIYSVNS-NG---G 274
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
+R+LT IDT P +SP G I F+S+R
Sbjct: 275 GLRRLTQSSSIDTEPFYSPDGRWIYFTSDR 304
Score = 40.0 bits (92), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 16/123 (13%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+++ F S R G ++ + A GE G +++T +T P SP G L+A+
Sbjct: 289 PFYSPDGRWIYFTSDRGGAPQIYRMPA-QGESAGAAQRVTFTGSYNTSPRVSPDGKLLAY 347
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S F LYV + + + +R+ F+A+G+++L+
Sbjct: 348 ISRTGG-----GFKLYV--------QDLQTGAANAITNTNRDE--SPSFAANGQYILYAT 392
Query: 561 NLG 563
G
Sbjct: 393 QSG 395
>gi|154252569|ref|YP_001413393.1| beta-propeller repeat-containing to-pal system protein TolB
[Parvibaculum lavamentivorans DS-1]
gi|189035985|sp|A7HV03.1|TOLB_PARL1 RecName: Full=Protein TolB; Flags: Precursor
gi|154156519|gb|ABS63736.1| Tol-Pal system beta propeller repeat TolB [Parvibaculum
lavamentivorans DS-1]
Length = 446
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ R G+ +++ +D + + + +LT+ IDT PS+SP G I F
Sbjct: 262 PRFSPDGQRIIMSLQRGGNSDIYTMDLRSRQ----VVRLTNTAAIDTAPSYSPDGRQITF 317
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ GS RRI +GS +S G+ + FT
Sbjct: 318 ESDRGGSQQI-----YVMDASGSNQRRISFG--QGS-------YATPVWSPRGDLIAFTK 363
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + V++ DG+G R LT +G+ N P W P ++
Sbjct: 364 ITGGRFV--------------IGVMRPDGTGERVLT-DGFHNEGPTWAPNGRV 401
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 19/163 (11%)
Query: 39 LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA 98
LT G + +F Q I +++ R+ PR+Y + + E++ P F R +
Sbjct: 208 LTRGNELVLTPRF-SPNSQEITYLAYRNNQPRVYVLDIETGQQEVVGEFPGMTFAPR-FS 265
Query: 99 RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVAS 158
+ + +S + S +Y+ DL++ + RLT +D +PS S G+ I S
Sbjct: 266 PDGQRIIMSLQRGGN------SDIYTMDLRSRQVVRLTNTAAIDTAPSYSPDGRQITFES 319
Query: 159 YESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGW--PTWS 199
+ I V S N+R I +G + P WS
Sbjct: 320 DRGG---------SQQIYVMDASGSNQRRISFGQGSYATPVWS 353
>gi|115350731|ref|YP_772570.1| translocation protein TolB [Burkholderia ambifaria AMMD]
gi|123027500|sp|Q0BHY7.1|TOLB_BURCM RecName: Full=Protein TolB; Flags: Precursor
gi|115280719|gb|ABI86236.1| TolB, N-terminal domain protein [Burkholderia ambifaria AMMD]
Length = 431
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 24/150 (16%)
Query: 356 IKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG + R L +WSP+ V Y S F+ ++ V I
Sbjct: 178 LQISDSDGQNARIALSSTEPIISPAWSPSGTKVAYVS----FERKKPIVYI--------- 224
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++P + + ++ GNN+ P+ SPD L +G+ ++ ++A NG G
Sbjct: 225 ------HDLPTGRRYMVSDQKGNNSAPAWSPDSNTLAVALSLTGNTQIYTVNA-NG---G 274
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
+R+LT IDT P +SP G I F+S+R
Sbjct: 275 GLRRLTQSSSIDTEPYYSPDGRWIYFTSDR 304
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 16/123 (13%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+++ F S R G ++ + A GE G +++T +T P SP G L+A+
Sbjct: 289 PYYSPDGRWIYFTSDRGGAPQIYRMPA-QGESAGAAQRVTFTGSYNTSPRISPDGKLLAY 347
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S F LYV + + + +R+ F+A+G++LL+
Sbjct: 348 ISRTGG-----GFKLYV--------QDLQTGAANAITNTNRDE--SPSFAANGQYLLYAT 392
Query: 561 NLG 563
G
Sbjct: 393 QSG 395
>gi|163854963|ref|YP_001629261.1| translocation protein TolB [Bordetella petrii DSM 12804]
gi|163258691|emb|CAP40990.1| TolB protein precursor [Bordetella petrii]
Length = 439
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 28/178 (15%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A +DG ++ R + +WSP + Y S F+S + V +
Sbjct: 189 LQVADADGQNPQVALRSREPVISPAWSPDGSKLAYVS----FESGKPVVYV--------- 235
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ +I GNN+ P+ SPDG L R G +++ V + +
Sbjct: 236 ------HTLATSARIPVANFKGNNSAPAWSPDGSKLAVALTRDGLSQIYI---VGADGSS 286
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
++R+LT P IDT P ++P G I F+S+R + SL DG RR+ G
Sbjct: 287 NMRRLTRSPGIDTEPIFTPDGRSIIFTSDRSGGPQIYQTSL-----DGGDARRLTFNG 339
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 69/175 (39%), Gaps = 43/175 (24%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVN------GEFNGDIRQLTDGPWIDTMPSWSPK 494
P+ SPDG L + S SG ++V F G+ ++ P+WSP
Sbjct: 212 PAWSPDGSKLAYVSFESGKPVVYVHTLATSARIPVANFKGN----------NSAPAWSPD 261
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
G +A + R + Y++ DGS R P +D E I F+ DG
Sbjct: 262 GSKLAVALTRDGLSQI-----YIVGADGSSNMRRLTRSP----GIDTEPI----FTPDGR 308
Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
++FT++ P +Y LDG RRLT+NG N +P P
Sbjct: 309 SIIFTSDRSG-------GPQ-------IYQTSLDGGDARRLTFNGSYNISPRISP 349
>gi|78485243|ref|YP_391168.1| TolB-like [Thiomicrospira crunogena XCL-2]
gi|119371064|sp|Q31H79.1|TOLB_THICR RecName: Full=Protein TolB; Flags: Precursor
gi|78363529|gb|ABB41494.1| TolB protein [Thiomicrospira crunogena XCL-2]
Length = 432
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 127/325 (39%), Gaps = 67/325 (20%)
Query: 315 LEPVASPVKELRMLRLNGSFPSFSPDGGLI-VFNHDFELNAGIKIAKSDGSKRWTLIKDR 373
L VA + +L L G +F+ + V N + +++A SDG +++
Sbjct: 141 LRQVAHKMSDLIYEELTGIRGAFNTRMAYVTVRNVKGKKQYSLEVADSDGYNSQPILRSS 200
Query: 374 TAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK 432
+ SWSP +H+ Y S F++ R+ + + S D +I K
Sbjct: 201 LPIMSPSWSPDGQHLAYVS----FENGRSQIVLQ--------SLDGKSRQIIAKFK---- 244
Query: 433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
G N P+ SPDGK L + G +++++D + +R+LT I+T W+
Sbjct: 245 ---GINGAPAWSPDGKKLALTLSKDGSADVYIMDMKTRK----LRRLTRNWAIETEAVWA 297
Query: 493 PKGDLIAFSSNRHNPDNVEAFSL---------YV--------IKPDGSGLRRIHVAGP-- 533
P G + F+S+R + L YV I PDG + +H G
Sbjct: 298 PNGHSLFFNSDRRGQPQIFQVFLDTGEMRRISYVGRYNANPAISPDGRYVAMVHANGGFH 357
Query: 534 EGSGDVDRERINHV---------CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYV 584
D+ E N + FS +GE +L+ N G G L V
Sbjct: 358 IAVLDLYNEDFNILTKTYLDESPTFSPNGEMILYAMNQGG--------------QGKLAV 403
Query: 585 VKLDGSGLRRLTWNGYENGTPAWHP 609
V ++ + + L+ E +P+W P
Sbjct: 404 VSVNSNVTQILSVQEGEVRSPSWGP 428
>gi|417845361|ref|ZP_12491390.1| Protein tolB [Haemophilus haemolyticus M21639]
gi|341955197|gb|EGT81658.1| Protein tolB [Haemophilus haemolyticus M21639]
Length = 435
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 42/204 (20%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A DG ++ + + + +WSP + + Y S F+++++ + +
Sbjct: 192 VRVADYDGYNQFIVNRSSQPIMSPAWSPDGQRLAYVS----FENKKSQLVV--------- 238
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+++ + + G+N P+ SPDG L F S + G N++V+ + G
Sbjct: 239 ------QDLNSGARKVVASFPGHNGAPAFSPDGSRLAFASSQDGSLNIYVMSS----HGG 288
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
QLT G +T PSWSP G I F+S+R V Y + +G G + G
Sbjct: 289 APTQLTRGAGNNTEPSWSPDGSSILFTSDRSGSPQV-----YRMSANGGGATLV---GGR 340
Query: 535 GSGDVDRERINHVCFSADGEWLLF 558
GS + SADG+ L+
Sbjct: 341 GSAQI----------SADGKTLVM 354
>gi|291612990|ref|YP_003523147.1| Tol-Pal system beta propeller repeat protein TolB [Sideroxydans
lithotrophicus ES-1]
gi|291583102|gb|ADE10760.1| Tol-Pal system beta propeller repeat protein TolB [Sideroxydans
lithotrophicus ES-1]
Length = 419
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 32/169 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + S GH ++FV + L D P ++ P+WSP G +A
Sbjct: 192 PAWSPDGSQLAYVSFERGHASVFVQSLATRKRT----VLADFPGSNSAPAWSPDGKQLAL 247
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+R LY+++ DG L RI S +D E + F+ DG+ LLFT+
Sbjct: 248 VLSRDGYSQ-----LYLVRNDGKDLHRITF-----SETIDTEPV----FTPDGKSLLFTS 293
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ G +Y V ++G RLT++G N +P P
Sbjct: 294 DRGG--------------SAQIYRVPVEGGSAERLTFDGTNNFSPRPSP 328
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 27/192 (14%)
Query: 314 HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDR 373
L +A V +L +L G FS + N D + + +A SDG TL+
Sbjct: 130 QLRAIAHRVSDLIYEKLTGDPGVFSTR--IAYVNRDGK-KYRLVVADSDGYGEQTLLALN 186
Query: 374 TAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK 432
+ +WSP + Y S F+ A+V + + + + +
Sbjct: 187 EPIMSPAWSPDGSQLAYVS----FERGHASVFV---------------QSLATRKRTVLA 227
Query: 433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
+ G+N+ P+ SPDGK L R G+ L+++ +G+ D+ ++T IDT P ++
Sbjct: 228 DFPGSNSAPAWSPDGKQLALVLSRDGYSQLYLVRN-DGK---DLHRITFSETIDTEPVFT 283
Query: 493 PKGDLIAFSSNR 504
P G + F+S+R
Sbjct: 284 PDGKSLLFTSDR 295
>gi|422804712|ref|ZP_16853144.1| tol-Pal system beta propeller TolB [Escherichia fergusonii B253]
gi|324114315|gb|EGC08284.1| tol-Pal system beta propeller TolB [Escherichia fergusonii B253]
Length = 430
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS-GDVDRERINHVCFSADG 553
+AF+S++ V Y + +G +RI G + DV + V S+DG
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITWEGTQNQDADVSSDGKFMVMVSSDG 353
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG IR++ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSELVIQTLANGA----IRKVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQITDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGTQN 334
>gi|294637421|ref|ZP_06715712.1| Tol-Pal system beta propeller repeat protein TolB [Edwardsiella
tarda ATCC 23685]
gi|451966098|ref|ZP_21919353.1| TolB protein [Edwardsiella tarda NBRC 105688]
gi|291089414|gb|EFE21975.1| Tol-Pal system beta propeller repeat protein TolB [Edwardsiella
tarda ATCC 23685]
gi|451315347|dbj|GAC64715.1| TolB protein [Edwardsiella tarda NBRC 105688]
Length = 430
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 67/129 (51%), Gaps = 19/129 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G IRQ+TDG +T PSW P
Sbjct: 245 HNGSPAFSPDGTKLAFALSKTGSLNLYVMDLASGA----IRQVTDGRSNNTEPSWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ + Y I +G +R+ EG+ + D E S DG++L
Sbjct: 301 NLAFTSDQAGRPQI-----YKININGGAAQRLTW---EGAQNQDAE------VSPDGKFL 346
Query: 557 -LFTANLGA 564
+ ++N GA
Sbjct: 347 VMVSSNAGA 355
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 38/165 (23%)
Query: 441 PSCSPDGK---FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497
P+ S DG ++ F SGRS V+ ++ NG IRQ+ P + P++SP G
Sbjct: 205 PAWSSDGSKLAYVTFESGRSA----LVIQTLS---NGAIRQVASFPRHNGSPAFSPDGTK 257
Query: 498 IAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL 557
+AF+ ++ + +LYV+ +R++ +G R + D + L
Sbjct: 258 LAFALSKTG-----SLNLYVMDLASGAIRQVT----DG-----RSNNTEPSWFPDSQNLA 303
Query: 558 FTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
FT++ +P +Y + ++G +RLTW G +N
Sbjct: 304 FTSDQAG------------RP--QIYKININGGAAQRLTWEGAQN 334
>gi|170701073|ref|ZP_02892050.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
ambifaria IOP40-10]
gi|172059754|ref|YP_001807406.1| translocation protein TolB [Burkholderia ambifaria MC40-6]
gi|226705867|sp|B1YTW7.1|TOLB_BURA4 RecName: Full=Protein TolB; Flags: Precursor
gi|170134013|gb|EDT02364.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
ambifaria IOP40-10]
gi|171992271|gb|ACB63190.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
ambifaria MC40-6]
Length = 431
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 24/150 (16%)
Query: 356 IKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG + R L +WSP+ V Y S F+ ++ V I
Sbjct: 178 LQISDSDGQNARIALSSTEPIISPAWSPSGTKVAYVS----FERKKPIVYI--------- 224
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++P + + ++ GNN+ P+ SPD L +G+ ++ ++A NG G
Sbjct: 225 ------HDLPTGRRYMVSDQKGNNSAPAWSPDSNTLAVALSLTGNTQIYTVNA-NG---G 274
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
+R+LT IDT P +SP G I F+S+R
Sbjct: 275 GLRRLTQSSSIDTEPYYSPDGRWIYFTSDR 304
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 16/123 (13%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+++ F S R G ++ + A GE G +++T +T P SP G L+A+
Sbjct: 289 PYYSPDGRWIYFTSDRGGAPQIYRMPA-QGESAGAAQRVTFTGSYNTSPRISPDGKLLAY 347
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S F LYV + + + +R+ F+A+G++LL+
Sbjct: 348 ISRTGG-----GFKLYV--------QDLQTGAANAITNTNRDE--SPSFAANGQYLLYAT 392
Query: 561 NLG 563
G
Sbjct: 393 QSG 395
>gi|423711705|ref|ZP_17686010.1| protein tolB [Bartonella washoensis Sb944nv]
gi|395413372|gb|EJF79842.1| protein tolB [Bartonella washoensis Sb944nv]
Length = 441
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 13/96 (13%)
Query: 442 SCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFS 501
S SPDGK +VF S RSG ++ ++A D+R+++ + P WSP+GD IAF+
Sbjct: 302 SYSPDGKQIVFSSDRSGKPQIYTMNAD----GSDLRRISSNEGSYSTPIWSPRGDYIAFT 357
Query: 502 SNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGP 533
FS+ V++PDG+G R + H GP
Sbjct: 358 KQSEG-----QFSIGVMRPDGTGERILTTGFHNEGP 388
Score = 45.8 bits (107), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 35/189 (18%)
Query: 441 PSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
P S DG+ ++ ++ G NL+ +D +LT IDT S+SP G I
Sbjct: 256 PRFSADGQKVIMSLLQNDGSANLYTMDLRTRTMT----RLTTTSAIDTSASYSPDGKQIV 311
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559
FSS+R + Y + DGS LRRI + EGS + +S G+++ FT
Sbjct: 312 FSSDRSGKPQI-----YTMNADGSDLRRI--SSNEGS-------YSTPIWSPRGDYIAFT 357
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLR 619
Q + + V++ DG+G R LT G+ N P W P ++ L R
Sbjct: 358 --------------KQSEGQFSIGVMRPDGTGERILT-TGFHNEGPTWAPNGRV-LMFFR 401
Query: 620 LEDDIGDKL 628
+ +G K+
Sbjct: 402 KDPGMGPKI 410
>gi|397167554|ref|ZP_10490996.1| tol-Pal system beta propeller repeat protein TolB [Enterobacter
radicincitans DSM 16656]
gi|396090912|gb|EJI88480.1| tol-Pal system beta propeller repeat protein TolB [Enterobacter
radicincitans DSM 16656]
Length = 430
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G N++V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNIYVMDIGSGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS-GDVDRERINHVCFSADG 553
+AF+S++ V Y + +G +RI G + DV + V S+DG
Sbjct: 301 TLAFTSDQAGRPQV-----YKVGINGGAAQRISWQGSQNQDADVSSDGKFMVMVSSDG 353
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + N IRQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSRLAYVTFESGRSALVIQTLANAS----IRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ N+ + GSG R G R + D + L FT+
Sbjct: 261 ALSKTGSLNIYVMDI------GSGQIRQVTDG--------RSNNTEPTWFPDSQTLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R++W G +N
Sbjct: 307 DQAG------------RP--QVYKVGINGGAAQRISWQGSQN 334
>gi|269959053|ref|YP_003328842.1| translocation protein [Anaplasma centrale str. Israel]
gi|269848884|gb|ACZ49528.1| translocation protein [Anaplasma centrale str. Israel]
Length = 441
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 79/180 (43%), Gaps = 33/180 (18%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G N+ P SPDGK ++ G N++ +D +G+ +LT+ I+T S+SP
Sbjct: 248 GVNSSPRFSPDGKHVLLSESAQGATNIYSIDLKSGKST----RLTNNKSINTSASYSPDK 303
Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW 555
I F+S+R LYV+ DG+ RRI S V +S G+W
Sbjct: 304 KSIVFNSDRSGRPQ-----LYVMNADGTNQRRISSGKGGYSAPV---------WSPRGDW 349
Query: 556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDL 615
+ FT G F + V+K DGSG RL G+ +P+W P ++ L
Sbjct: 350 IAFTKADG----------KNFH----IGVMKPDGSG-ERLLAKGHMVDSPSWSPNGRVIL 394
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 94/209 (44%), Gaps = 53/209 (25%)
Query: 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNS------------- 379
S P FSPD +V+ + AKS GS ++ D Y++
Sbjct: 207 STPRFSPDARSLVY---------MSYAKSSGS---IVLHDLETGYSTALGGVRGVNSSPR 254
Query: 380 WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNA 439
+SP KHV+ + +S + I + + S LT ++ N +
Sbjct: 255 FSPDGKHVLLS------ESAQGATNIYSIDLKSGKSTR------------LTNNKSINTS 296
Query: 440 FPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
S SPD K +VF S RSG L+V++A +G + R+++ G + P WSP+GD IA
Sbjct: 297 -ASYSPDKKSIVFNSDRSGRPQLYVMNA-DGT---NQRRISSGKGGYSAPVWSPRGDWIA 351
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
F+ + + F + V+KPDGSG R +
Sbjct: 352 FTKA-----DGKNFHIGVMKPDGSGERLL 375
Score = 38.9 bits (89), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 93/229 (40%), Gaps = 41/229 (17%)
Query: 286 NPFVSANSEFIGYHRFRGES----------TEGQSTIPHLEPVASPVKELRMLRLNGSFP 335
N ++++ EF+ RF ++ + G + LE S L +R S P
Sbjct: 196 NVYITSTGEFVSTPRFSPDARSLVYMSYAKSSGSIVLHDLETGYS--TALGGVRGVNSSP 253
Query: 336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGP 394
FSPDG ++ + + I K L +++ + S+SP +K ++
Sbjct: 254 RFSPDGKHVLLSESAQGATNIYSIDLKSGKSTRLTNNKSINTSASYSPDKKSIV------ 307
Query: 395 IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRS 454
F S+R+ R + +D N+ I G + P SP G ++ F
Sbjct: 308 -FNSDRS----GRPQLYVMNADGTNQRRI--------SSGKGGYSAPVWSPRGDWIAFTK 354
Query: 455 --GRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFS 501
G++ H + D +GE R L G +D+ PSWSP G +I F+
Sbjct: 355 ADGKNFHIGVMKPDG-SGE-----RLLAKGHMVDS-PSWSPNGRVILFT 396
>gi|226225661|ref|YP_002759767.1| putative S9C family peptidase [Gemmatimonas aurantiaca T-27]
gi|226088852|dbj|BAH37297.1| putative S9C family peptidase [Gemmatimonas aurantiaca T-27]
Length = 691
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 115/302 (38%), Gaps = 79/302 (26%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAK--SDGSKRWTLIKDRTAFYNSWSPTEKHVI 388
N + P +SPDG +VF D E A + + S KR T + R +WSP K +
Sbjct: 93 NETAPRWSPDGTQLVFRSDREGGAQLWTMQVASGALKRLTSVA-RGPLGAAWSPDGKQIA 151
Query: 389 YTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGK 448
+TS P + IA+ Q+ P G P K
Sbjct: 152 FTSLVP-----EPALSIAQ---QIAP-------------------PAGATWAPPARAFDK 184
Query: 449 FLVFRSG----RSGHKNLFVLDAVNGEFNGDIRQLTDGPW--------IDTMPSWSPKGD 496
+ G G LFV+D +G RQLT G + +PSWSP G
Sbjct: 185 LIYRFDGAGELERGWSQLFVVDVASGT----TRQLTKGAYHVGGGNGRGSGVPSWSPDGK 240
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPD-GSGLRRIHVA--GPEGSGDVDRERINHVCFSADG 553
I S+NR +E+ V+ D SG R GP+ N S DG
Sbjct: 241 TILISANRRPDYEIESTDTEVMAVDVVSGDVRALTTRFGPD----------NRPMMSPDG 290
Query: 554 EWLLFTA----NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN--GTPAW 607
+W+ FT LG +Q + +LYV++ DGS R LT Y+ G+P W
Sbjct: 291 QWIAFTGYDDRRLG------------YQNH-ELYVMRADGSARRSLT-ASYDRSVGSPVW 336
Query: 608 HP 609
P
Sbjct: 337 AP 338
>gi|365901242|ref|ZP_09439093.1| Protein tolB precursor [Bradyrhizobium sp. STM 3843]
gi|365418009|emb|CCE11635.1| Protein tolB precursor [Bradyrhizobium sp. STM 3843]
Length = 459
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 77/173 (44%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NLFV+D + +LTD P IDT P +SP G + F
Sbjct: 276 PRFSPDGQRIIMSLQQGGNSNLFVMDLRSRTTT----RLTDTPAIDTSPCYSPDGSQLCF 331
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ G +RI G G + +S G+++ FT
Sbjct: 332 ESDRGGKPQI-----YVMPAGGGQAQRISF----GDGTY-----STPVWSPRGDYIAFTK 377
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + V+K DGSG R LT G+ N P + P ++
Sbjct: 378 QGGG----------QF----SIGVIKPDGSGERILT-AGFHNEGPTFAPNGRV 415
>gi|406988050|gb|EKE08183.1| hypothetical protein ACD_17C00298G0002 [uncultured bacterium]
Length = 423
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP-WIDTMPSWSPK 494
GN A PS S DGK + F S +G +LF+ D NG+ G +QL P P++SP
Sbjct: 226 GNQALPSISKDGKQIAFISDVAGRPDLFIQDLENGKIKGKAKQLFSYPRATQATPTYSPD 285
Query: 495 GDLIAFSSNRHNPDNVEAFSL 515
G IAF S++ P + ++
Sbjct: 286 GKQIAFVSDKDGPPRIYVLAV 306
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 95/232 (40%), Gaps = 32/232 (13%)
Query: 293 SEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFEL 352
SEF G++ ++++ H P+ P+ +LR N + PS S DG I F D
Sbjct: 194 SEFYYASEKTGQTKLYKASLSH--PIGEPLLDLRG---NQALPSISKDGKQIAFISDVAG 248
Query: 353 NAGIKIAKSDGSKRWTLIKDRTAFYNSW-SPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411
+ I + K IK + S+ T+ Y+ G QIA VS +
Sbjct: 249 RPDLFIQDLENGK----IKGKAKQLFSYPRATQATPTYSPDGK---------QIAFVSDK 295
Query: 412 LDP------SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVL 465
P + + + K+LTK+ N + P+ SPDG L + + + +++
Sbjct: 296 DGPPRIYVLAVSQKKSKTLPQPKLLTKKNRENTS-PAWSPDGTKLAYSAKVDSFRQIWIY 354
Query: 466 DAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYV 517
D + GE LT GP PSW+P D N D+ E + +++
Sbjct: 355 DFLTGEEIA----LTTGPENKENPSWAP--DSFHLIYNTETNDHSELYLIHL 400
>gi|171058627|ref|YP_001790976.1| translocation protein TolB [Leptothrix cholodnii SP-6]
gi|170776072|gb|ACB34211.1| Tol-Pal system beta propeller repeat protein TolB [Leptothrix
cholodnii SP-6]
Length = 427
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 28/154 (18%)
Query: 379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN 438
+WSP + + Y S F++ +A V + +++ + + G+N
Sbjct: 201 AWSPNGRELAYVS----FEARKAVVYV---------------QDVLTSKRRVIANYKGSN 241
Query: 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
+ P+ SPDG LV R G L+ + GD+R+LT IDT +WSP G +
Sbjct: 242 SAPAWSPDGNQLVVTLTRDGLSQLYTMS----RTGGDLRRLTTSSGIDTEAAWSPDGKSV 297
Query: 499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
F S+R + Y + G R+ AG
Sbjct: 298 YFVSDRGGGPQI-----YRVAAGGGNAERVTFAG 326
>gi|381405270|ref|ZP_09929954.1| translocation protein TolB [Pantoea sp. Sc1]
gi|380738469|gb|EIB99532.1| translocation protein TolB [Pantoea sp. Sc1]
Length = 431
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ RQ+TDG + T P+W P
Sbjct: 246 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----TRQVTDGRYNSTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS-GDVDRERINHVCFSADG 553
+A++S D A +Y + +G +RI G + DV + + V S G
Sbjct: 302 TLAYTS-----DQAGAPQIYKVGINGGAPQRITWEGGQNQDADVATDGKSMVMISTSG 354
Score = 38.9 bits (89), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG + + + SG L V NG IRQ+ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKVAYVTFESGKSALVVQTLSNGA----IRQVASYPRHNGAPAFSPDGSKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ R++ R + D + L +T+
Sbjct: 262 ALSKTG-----SLNLYVMDLASGQTRQVTDG---------RYNSTEPTWFPDSQTLAYTS 307
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +Y V ++G +R+TW G +N
Sbjct: 308 DQAGAP--------------QIYKVGINGGAPQRITWEGGQN 335
>gi|295688123|ref|YP_003591816.1| Tol-Pal system beta propeller repeat-containing protein Tolb
[Caulobacter segnis ATCC 21756]
gi|295430026|gb|ADG09198.1| Tol-Pal system beta propeller repeat protein TolB [Caulobacter
segnis ATCC 21756]
Length = 443
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 131/325 (40%), Gaps = 61/325 (18%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA 354
Y R GE + + + P + +K L ++ +G+ P + DG IV F
Sbjct: 164 YERLTGEKGYFDTRVAFVAESGPKLNRIKRLAIMDQDGANPQYLTDGSYIVMTPRF---- 219
Query: 355 GIKIAKSDGSKRWTLIKDR----TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410
S S+ T + R + + + + + + G +F + R + +V+F
Sbjct: 220 ------SSTSQELTYMALRPTGSSIYLLNLETSRQETVGKFPGMVF-APRFSPDGGKVAF 272
Query: 411 QLDPSDDNNREEIPCDVKILTKEET--GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV 468
++ + +++ + + T+ T + PS SPDG +VF S R G ++V+
Sbjct: 273 SVEKNGNSDIYVMDLRSRSTTRITTDPSIDTSPSFSPDGTKIVFNSDRGGQAQIYVM--- 329
Query: 469 NGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
N + +G +R+++ G T P WSP+GD IAF+ F + V++PDG R +
Sbjct: 330 NTDGSG-VRRISFGGGRYTTPVWSPRGDFIAFTKQTGG-----QFHIGVMRPDGGDERLL 383
Query: 529 HVA----GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYV 584
+ GP ++ +G L+F G P W
Sbjct: 384 TTSYLDEGP--------------TWAPNGRVLMFFREGGG--GNPKLW-----------T 416
Query: 585 VKLDGSGLRRLTWNGYENGTPAWHP 609
V + G LR +NG PAW P
Sbjct: 417 VDITGRILRPAAYNG-SGSDPAWSP 440
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 41/156 (26%)
Query: 477 RQLTDG--PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
RQ T G P + P +SP G +AFS ++ ++ YV+ RI
Sbjct: 247 RQETVGKFPGMVFAPRFSPDGGKVAFSVEKNGNSDI-----YVMDLRSRSTTRITT---- 297
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR 594
D FS DG ++F ++ G +YV+ DGSG+RR
Sbjct: 298 -----DPSIDTSPSFSPDGTKIVFNSDRGG--------------QAQIYVMNTDGSGVRR 338
Query: 595 LTWNGYENGTPAWHP-----------GNQLDLGKLR 619
+++ G TP W P G Q +G +R
Sbjct: 339 ISFGGGRYTTPVWSPRGDFIAFTKQTGGQFHIGVMR 374
>gi|91776691|ref|YP_546447.1| TolB-like protein [Methylobacillus flagellatus KT]
gi|91710678|gb|ABE50606.1| TolB-like protein [Methylobacillus flagellatus KT]
Length = 415
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 111/284 (39%), Gaps = 67/284 (23%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A SDG T++ + WSP + Y S F+ ++ + +
Sbjct: 165 LQVADSDGYNPQTVVSSAEPIISPVWSPDGTKLAYVS----FEKKKPIIYV--------- 211
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ + + + GNN+ P+ SPDGK L + + ++ ++N + G
Sbjct: 212 ------QSLVSGQRTVLANFKGNNSAPAWSPDGKRLAIVLTHAANSQIY---SINADGTG 262
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV--------EAFSL-----YVI--- 518
++QLT IDT P+WSP G I F+S+R + EA + YV+
Sbjct: 263 -LQQLTRTTAIDTEPTWSPDGRYIYFTSDRGGSPQIYRMPSSGGEASRMTFEGSYVVSPR 321
Query: 519 -KPDGSGLRRIHVAGPE--------GSGDV----DRERINHVCFSADGEWLLFTANLGAV 565
PDG L I G + +G V D + F+ +G LL +G
Sbjct: 322 LSPDGKSLAYIRRDGGQFRVALQDLQTGQVQVLSDGPKDESPSFAPNGRMLLHATRVGG- 380
Query: 566 MAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G L V DG +RL+ +G + PAW P
Sbjct: 381 -------------RGALAAVSADGRVKQRLSESGGDVREPAWGP 411
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 36/211 (17%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN--SWSPTEKHVI 388
N S P++SPDG + N+ I +DG+ L + TA +WSP +++
Sbjct: 228 NNSAPAWSPDGKRLAIVLTHAANSQIYSINADGTGLQQLTRT-TAIDTEPTWSPDGRYIY 286
Query: 389 YTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGK 448
+TS + QI R+ PS + + + P SPDGK
Sbjct: 287 FTS------DRGGSPQIYRM-----PSSGGEASRMTFEGSYVVS--------PRLSPDGK 327
Query: 449 FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD 508
L + G + + D G+ ++ L+DGP D PS++P G ++ ++
Sbjct: 328 SLAYIRRDGGQFRVALQDLQTGQ----VQVLSDGPK-DESPSFAPNGRMLLHATRVGGRG 382
Query: 509 NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV 539
+ A S DG +R+ E GDV
Sbjct: 383 ALAAVS-----ADGRVKQRLS----ESGGDV 404
>gi|337265841|ref|YP_004609896.1| Tol-Pal system beta propeller repeat protein TolB [Mesorhizobium
opportunistum WSM2075]
gi|336026151|gb|AEH85802.1| Tol-Pal system beta propeller repeat protein TolB [Mesorhizobium
opportunistum WSM2075]
Length = 436
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 79/174 (45%), Gaps = 34/174 (19%)
Query: 441 PSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
P SPDG+ ++ R G+ N+F +D + +LT+ IDT PS+SP G +
Sbjct: 254 PRFSPDGQKVIMSLLRDDGNSNIFAMDLRSRSTT----RLTNSTAIDTSPSYSPDGSKVV 309
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559
F+S+R + YV+ DGSG RI S V +S G+ + FT
Sbjct: 310 FTSDRGGRAQI-----YVMGADGSGQTRISFGDGVYSTPV---------WSPRGDLIAFT 355
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G +FQ + V+K DGSG R L+ +G++ P W P ++
Sbjct: 356 KQTGG----------EFQ----IGVMKTDGSGERILS-SGFQQEGPTWAPNGRV 394
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 13/115 (11%)
Query: 416 DDNNREEIPCDVKILTKEETGN----NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471
DD N D++ + N + PS SPDG +VF S R G ++V+ A +
Sbjct: 270 DDGNSNIFAMDLRSRSTTRLTNSTAIDTSPSYSPDGSKVVFTSDRGGRAQIYVMGA---D 326
Query: 472 FNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526
+G R ++ G + + P WSP+GDLIAF+ F + V+K DGSG R
Sbjct: 327 GSGQTR-ISFGDGVYSTPVWSPRGDLIAFTKQTGG-----EFQIGVMKTDGSGER 375
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 39 LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA 98
L+DG SI +F + Q I ++S SG PR+Y + + + EL+ + P F R
Sbjct: 200 LSDGRSIVLTPRFSPNR-QEITYMSYESGQPRVYLLQIETGQRELVGNFPGMTFAPRFSP 258
Query: 99 RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVAS 158
K+ + + S +++ DL++ TRLT +D SPS S G + S
Sbjct: 259 DGQKVIMSLLRDDGN------SNIFAMDLRSRSTTRLTNSTAIDTSPSYSPDGSKVVFTS 312
>gi|121604951|ref|YP_982280.1| translocation protein TolB [Polaromonas naphthalenivorans CJ2]
gi|166229983|sp|A1VNY1.1|TOLB_POLNA RecName: Full=Protein TolB; Flags: Precursor
gi|120593920|gb|ABM37359.1| TolB, N-terminal domain protein [Polaromonas naphthalenivorans CJ2]
Length = 429
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 87/207 (42%), Gaps = 38/207 (18%)
Query: 358 IAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD 416
+A SDG S + L +WSP+ + Y S F+S + +
Sbjct: 182 VADSDGESAQSALASPEPIISPAWSPSGAQLAYVS----FESRKPVIY------------ 225
Query: 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI 476
++ + L G+N+ P+ SPDG LV ++G ++ + +NG GD
Sbjct: 226 ---SHDVATGKRRLLANFRGSNSAPAWSPDGSQLVATLSQAGGSQIYSI-GLNG---GDP 278
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS 536
++LT IDT P++SP G LI F S+R + Y + P G R+ G
Sbjct: 279 KRLTQSSSIDTEPAFSPDGRLIYFVSDRGGSPQI-----YRMSPAGGNAERVTFTGS--- 330
Query: 537 GDVDRERINHVCFSADGEWLLFTANLG 563
I+ V S DG WL + + +G
Sbjct: 331 -----YNISPVV-SPDGRWLAYVSRVG 351
>gi|13473330|ref|NP_104897.1| translocation protein TolB [Mesorhizobium loti MAFF303099]
gi|32699716|sp|Q98F84.1|TOLB_RHILO RecName: Full=Protein TolB; Flags: Precursor
gi|14024079|dbj|BAB50683.1| TolB protein precursor [Mesorhizobium loti MAFF303099]
Length = 436
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 79/174 (45%), Gaps = 34/174 (19%)
Query: 441 PSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
P SPDG+ ++ R G+ N+F +D + +LT+ IDT PS+SP G +
Sbjct: 254 PRFSPDGQKVIMSLLRDDGNSNIFAMDLRSRSTT----RLTNSTAIDTSPSYSPDGSKVV 309
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559
F+S+R + YV+ DGSG RI S V +S G+ + FT
Sbjct: 310 FTSDRGGRAQI-----YVMGADGSGQTRISFGDGVYSTPV---------WSPRGDLIAFT 355
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G +FQ + V+K DGSG R L+ +G++ P W P ++
Sbjct: 356 KQTGG----------EFQ----IGVMKTDGSGERILS-SGFQQEGPTWAPNGRV 394
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 13/115 (11%)
Query: 416 DDNNREEIPCDVKILTKEETGN----NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471
DD N D++ + N + PS SPDG +VF S R G ++V+ A +
Sbjct: 270 DDGNSNIFAMDLRSRSTTRLTNSTAIDTSPSYSPDGSKVVFTSDRGGRAQIYVMGA---D 326
Query: 472 FNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526
+G R ++ G + + P WSP+GDLIAF+ F + V+K DGSG R
Sbjct: 327 GSGQTR-ISFGDGVYSTPVWSPRGDLIAFTKQTGG-----EFQIGVMKTDGSGER 375
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 39 LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA 98
L+DG SI +F + Q I ++S SG PR+Y + + + EL+ + P F R
Sbjct: 200 LSDGRSIVLTPRFSPNR-QEITYMSYESGQPRVYLLQIETGQRELVGNFPGMTFAPRFSP 258
Query: 99 RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVAS 158
K+ + + S +++ DL++ TRLT +D SPS S G + S
Sbjct: 259 DGQKVIMSLLRDDGN------SNIFAMDLRSRSTTRLTNSTAIDTSPSYSPDGSKVVFTS 312
>gi|421868662|ref|ZP_16300307.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins
[Burkholderia cenocepacia H111]
gi|444359762|ref|ZP_21161058.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
cenocepacia BC7]
gi|444373339|ref|ZP_21172712.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
cenocepacia K56-2Valvano]
gi|358071227|emb|CCE51185.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins
[Burkholderia cenocepacia H111]
gi|443591953|gb|ELT60802.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
cenocepacia K56-2Valvano]
gi|443601539|gb|ELT69679.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
cenocepacia BC7]
Length = 402
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 24/150 (16%)
Query: 356 IKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG + R L +WSP+ V Y S F+ ++ V I
Sbjct: 149 LQISDSDGQNARIALSSTEPIISPAWSPSGTKVAYVS----FERKKPIVYI--------- 195
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++P + + ++ GNN+ P+ SPD L +G+ ++ ++A NG G
Sbjct: 196 ------HDLPTGRRYMVSDQKGNNSAPAWSPDSNTLAVALSLTGNTQIYTVNA-NG---G 245
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
+R+LT IDT P +SP G I F+S+R
Sbjct: 246 GLRRLTQSSSIDTEPFYSPDGRWIYFTSDR 275
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 16/123 (13%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+++ F S R G ++ + A GE G +++T +T P SP G L+A+
Sbjct: 260 PFYSPDGRWIYFTSDRGGAPQIYRMPA-QGESAGAAQRVTFTGSYNTSPRVSPDGKLLAY 318
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S F LYV + + + +R+ F+A+G++LL+
Sbjct: 319 ISRTGG-----GFKLYV--------QDLQTGAANAITNTNRDE--SPSFAANGQYLLYAT 363
Query: 561 NLG 563
G
Sbjct: 364 QSG 366
>gi|374370789|ref|ZP_09628784.1| translocation protein TolB [Cupriavidus basilensis OR16]
gi|373097650|gb|EHP38776.1| translocation protein TolB [Cupriavidus basilensis OR16]
Length = 442
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 108/286 (37%), Gaps = 69/286 (24%)
Query: 356 IKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ I+ SDG + + L + SWSP V Y S F++++ V +
Sbjct: 191 LLISDSDGQNSQVALTSNEPIISPSWSPDGSKVAYVS----FEAKKPVVYV--------- 237
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++ + L + GNN+ PS SPDG+ L R G+ ++ + G
Sbjct: 238 ------HDLATGRRTLVSNQKGNNSAPSWSPDGQRLAVALSRDGNTQIYQV----GADGS 287
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF-----------------SLYV 517
+++LT IDT P ++P G I F+S+R V S V
Sbjct: 288 GLKRLTRSSAIDTEPQYAPDGRSIYFTSDRGGAPQVYRMPAGGEEGGAAQRVTFKGSYNV 347
Query: 518 ---IKPDGSGLRRIHVAGP-------EGSGDV----DRERINHVCFSADGEWLLFTANLG 563
I PDG L I +G G+GDV D F+A+G+++L+ +G
Sbjct: 348 SPRISPDGKQLAYITRSGGFKLQLMDLGNGDVTSLTDTANDEAPSFAANGKYILYATRVG 407
Query: 564 AVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
L V DG + L+ E P+W P
Sbjct: 408 GRSV--------------LAAVSTDGRTRQVLSLQSGEVREPSWGP 439
>gi|304395719|ref|ZP_07377602.1| Tol-Pal system beta propeller repeat protein TolB [Pantoea sp. aB]
gi|440759853|ref|ZP_20938977.1| tolB protein precursor protein [Pantoea agglomerans 299R]
gi|304357013|gb|EFM21377.1| Tol-Pal system beta propeller repeat protein TolB [Pantoea sp. aB]
gi|436426392|gb|ELP24105.1| tolB protein precursor protein [Pantoea agglomerans 299R]
Length = 431
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 10/118 (8%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ RQ+TDG + T P+W P
Sbjct: 246 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----TRQVTDGRYNSTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS-GDVDRERINHVCFSADG 553
+A++S D A +Y + +G +RI G + DV + + V S +G
Sbjct: 302 TLAYTS-----DQAGAPQIYKVGINGGTPQRITWEGGQNQDADVATDGKSMVMISTNG 354
>gi|347733432|ref|ZP_08866491.1| tol-Pal system beta propeller repeat protein TolB [Desulfovibrio
sp. A2]
gi|347517793|gb|EGY24979.1| tol-Pal system beta propeller repeat protein TolB [Desulfovibrio
sp. A2]
Length = 446
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 105/253 (41%), Gaps = 46/253 (18%)
Query: 316 EPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH--DFELNAGIKIAKSDGSKRWTLIKDR 373
+P ++++ L PS+SPD IVF+H D G+ + ++R
Sbjct: 201 KPTGRDLRQITNLPGEALSPSWSPDSRFIVFSHMDDRTHALGVWDRLTRQTQRIKF-PGN 259
Query: 374 TAFYNSWSPTEKHVIYTSTGP---------IFQSERATVQIARVSFQLDPSDDNNREEIP 424
T ++ P K + STG +FQ ER A S + PS D ++
Sbjct: 260 TVIGPTFMPDNKVAVSLSTGKNPGIFLLNHVFQKERPLEDSA--SIDVSPSFDATGTKMA 317
Query: 425 -CDVK-----ILTKEET----------GN-NAFPSCSPDGKFLVF-RSGRSGHKNLFVLD 466
C + I K+ T GN N PS SPDG + F R GH+ +FV D
Sbjct: 318 FCSSRLGGPQIFLKDLTTGQVTRISRSGNYNTAPSISPDGTLIAFARMTDYGHR-IFVYD 376
Query: 467 AVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526
V RQ+T GP D PS++P +AF+S R A +Y+I G +
Sbjct: 377 MVTQS----ERQVTFGPGTDETPSFAPDSYFLAFTSTRSG-----AKQIYLITRHGGDAK 427
Query: 527 RIHVAGPEGSGDV 539
R+ P GSGD
Sbjct: 428 RV----PTGSGDA 436
>gi|163786907|ref|ZP_02181355.1| WD40-like Beta Propeller [Flavobacteriales bacterium ALC-1]
gi|159878767|gb|EDP72823.1| WD40-like Beta Propeller [Flavobacteriales bacterium ALC-1]
Length = 368
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 30/148 (20%)
Query: 476 IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI-HVAGPE 534
++QLT+ D P+ SPKGD I F+S R LY + DGS +++I + G +
Sbjct: 167 VKQLTNEVGYDAEPTVSPKGDKIVFTSTRSGD-----LELYTMNIDGSDVKQITNELGYD 221
Query: 535 GSGDVDRERINHVCFSADGEWLLFTA----------NLGAVMAEPVSWPNQFQPYGDLYV 584
G FS DG L+F + + ++AE + P + + LY+
Sbjct: 222 GGA----------FFSPDGTKLIFRSSRPKTEKEIKDYKDLLAEGLVEPTEME----LYI 267
Query: 585 VKLDGSGLRRLTWNGYENGTPAWHPGNQ 612
DGS LR+LT G N +P +HP +
Sbjct: 268 CNADGSDLRQLTDLGNANWSPFFHPSGE 295
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 99/233 (42%), Gaps = 42/233 (18%)
Query: 382 PTEKHVIYTSTGPIFQSERATVQIARVSFQLDP---SDDNNREEIPCDVKILTKEETGNN 438
P KH+IY ST + Q + + + + P S D ++ ++ E G +
Sbjct: 119 PDNKHIIYAST-HLKQDKCPDTPLRKNGKYIWPIYDSYDIFVADLEGNIVKQLTNEVGYD 177
Query: 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
A P+ SP G +VF S RSG L+ ++ ++G D++Q+T+ D +SP G +
Sbjct: 178 AEPTVSPKGDKIVFTSTRSGDLELYTMN-IDGS---DVKQITNELGYDGGAFFSPDGTKL 233
Query: 499 AFSSNRHNPDN-------------VE--AFSLYVIKPDGSGLRRIHVAGPEGSGDVDRER 543
F S+R + VE LY+ DGS LR++ G
Sbjct: 234 IFRSSRPKTEKEIKDYKDLLAEGLVEPTEMELYICNADGSDLRQLTDLGNANWSPF---- 289
Query: 544 INHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596
F GE +LF++N A P +LY++ +DG L+R+T
Sbjct: 290 -----FHPSGEKILFSSNFEAERGFPF----------NLYLIDIDGKNLKRVT 327
Score = 42.7 bits (99), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 26/186 (13%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGS--KRWT--LIKDRTAFYNSWSPTEKHVIYT 390
P+ SP G IVF + + DGS K+ T L D AF+ SP +I+
Sbjct: 180 PTVSPKGDKIVFTSTRSGDLELYTMNIDGSDVKQITNELGYDGGAFF---SPDGTKLIFR 236
Query: 391 STGPIFQSERATVQIARVSFQLDPSDDNNREEIPC-----DVKILTKEETGN-NAFPSCS 444
S+ P + E + ++P++ E C D++ LT + GN N P
Sbjct: 237 SSRPKTEKEIKDYKDLLAEGLVEPTE---MELYICNADGSDLRQLT--DLGNANWSPFFH 291
Query: 445 PDGKFLVFRSGRSGHK----NLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P G+ ++F S + NL+++D ++G+ +++++T G D P +S G +AF
Sbjct: 292 PSGEKILFSSNFEAERGFPFNLYLID-IDGK---NLKRVTHGETFDAFPVFSNNGKYLAF 347
Query: 501 SSNRHN 506
SSNR+N
Sbjct: 348 SSNRNN 353
>gi|340028026|ref|ZP_08664089.1| translocation protein TolB [Paracoccus sp. TRP]
Length = 442
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 34/188 (18%)
Query: 427 VKILTKEETGNNAF-PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWI 485
+ L + G +F P SPDG+++V+ ++G+ +++ +DA G R LT+ P I
Sbjct: 243 TRSLGSAQQGTMSFSPRFSPDGRWIVYSLEKNGNTDIYQMDAATGA----QRALTNAPSI 298
Query: 486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERIN 545
+T PS+SP G I F S+R LY++ +G +RI EG R
Sbjct: 299 ETSPSYSPDGRQIVFESDRSGTPQ-----LYIMGANGGEPKRISFG--EG-------RYG 344
Query: 546 HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTP 605
+S G+ + FT + +F + V++ DGS + LT + + G P
Sbjct: 345 TPVWSPRGDMIAFTRQVS----------GKFH----IGVMRTDGSEEKMLTESFLDEG-P 389
Query: 606 AWHPGNQL 613
W P ++
Sbjct: 390 TWAPNGRV 397
>gi|319781027|ref|YP_004140503.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317166915|gb|ADV10453.1| Tol-Pal system beta propeller repeat protein TolB [Mesorhizobium
ciceri biovar biserrulae WSM1271]
Length = 436
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 79/174 (45%), Gaps = 34/174 (19%)
Query: 441 PSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
P SPDG+ ++ R G+ N+F +D + +LT+ IDT PS+SP G +
Sbjct: 254 PRFSPDGQKVIMSLLRDDGNSNIFAMDLRSRSTT----RLTNSTAIDTSPSYSPDGSKVV 309
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559
F+S+R + YV+ DGSG RI S V +S G+ + FT
Sbjct: 310 FTSDRGGRAQI-----YVMGADGSGQTRISFGDGVYSTPV---------WSPRGDLIAFT 355
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G +FQ + V+K DGSG R L+ +G++ P W P ++
Sbjct: 356 KQTGG----------EFQ----IGVMKTDGSGERILS-SGFQQEGPTWAPNGRV 394
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 13/115 (11%)
Query: 416 DDNNREEIPCDVKILTKEETGN----NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471
DD N D++ + N + PS SPDG +VF S R G ++V+ A +
Sbjct: 270 DDGNSNIFAMDLRSRSTTRLTNSTAIDTSPSYSPDGSKVVFTSDRGGRAQIYVMGA---D 326
Query: 472 FNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526
+G R ++ G + + P WSP+GDLIAF+ F + V+K DGSG R
Sbjct: 327 GSGQTR-ISFGDGVYSTPVWSPRGDLIAFTKQTGG-----EFQIGVMKTDGSGER 375
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 39 LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA 98
L+DG SI +F + Q I ++S SG PR+Y + + + EL+ + P F R
Sbjct: 200 LSDGRSIVLTPRFSPNR-QEITYMSYESGQPRVYLLQIETGQRELVGNFPGMTFAPRFSP 258
Query: 99 RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVAS 158
K+ + + S +++ DL++ TRLT +D SPS S G + S
Sbjct: 259 DGQKVIMSLLRDDGN------SNIFAMDLRSRSTTRLTNSTAIDTSPSYSPDGSKVVFTS 312
>gi|420087587|ref|ZP_14599545.1| translocation protein TolB, partial [Escherichia coli O111:H8 str.
CVM9602]
gi|394392778|gb|EJE69516.1| translocation protein TolB, partial [Escherichia coli O111:H8 str.
CVM9602]
Length = 237
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 52 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 107
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 108 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 153
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 154 VMVSSNG 160
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 12 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 67
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 68 ALSK-----TGSLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 113
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 114 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 141
>gi|386828108|ref|ZP_10115215.1| tol-pal system beta propeller repeat protein TolB [Beggiatoa alba
B18LD]
gi|386428992|gb|EIJ42820.1| tol-pal system beta propeller repeat protein TolB [Beggiatoa alba
B18LD]
Length = 429
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 108/281 (38%), Gaps = 64/281 (22%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A DG+ + L + F +WSP ++V Y S + ++A V I VS
Sbjct: 183 LYVADMDGANPQMMLDSNEPIFSPAWSPDGQNVAYVS----LEGKQAGVYIQNVS----- 233
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
S NR G N+ PS SPDG L R G+ ++V + + F
Sbjct: 234 SGRRNR----------IAAFKGLNSAPSWSPDGSRLAMTLSRDGNPEIYVFNVGSRSFT- 282
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
+LT+ IDT P W+P G + F+S+R + Y I G G +R+ G
Sbjct: 283 ---RLTNDASIDTEPEWTPDGGSLVFTSDRTGSPQI-----YRISLGGGGAQRLTFTGNY 334
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLG-----AVM-----------AEPVSWPNQFQP 578
+ R R+ S DG LL N G AVM F P
Sbjct: 335 NA----RPRV-----SPDGTKLLMLHNGGRGYQIAVMDLASGQLSILSDSSSDESPSFAP 385
Query: 579 YGDLYV---------VKLDGSGLRRLTWN-GYENGTPAWHP 609
G + + V +DG +RL G E PAW P
Sbjct: 386 NGSMVIYGTGRQLAAVSIDGRVRQRLAVQAGDEVREPAWSP 426
>gi|300712709|ref|YP_003738522.1| periplasmic component of the Tol biopolymer transport system
[Halalkalicoccus jeotgali B3]
gi|299126393|gb|ADJ16731.1| periplasmic component of the Tol biopolymer transport system
[Halalkalicoccus jeotgali B3]
Length = 1046
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 70/151 (46%), Gaps = 21/151 (13%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P +PDG + F+ G+ +++ + A +G DI+Q+TDG W D P WSP G IAF
Sbjct: 106 PDYAPDGARIAFQGYGDGNFDIWTM-AADGS---DIQQITDGFWDDRKPQWSPDGTQIAF 161
Query: 501 SSNRH-NPD----NVEAFSLYVIKPDGS----------GLRRIHVAGPEGS-GDVDRERI 544
SS+R+ N D ++E L D S G +VA P G GD D I
Sbjct: 162 SSDRNENYDIWTVDIETGDLQQWTDDSSENFEPTWSPDGTEIAYVADPTGEYGDGDDSPI 221
Query: 545 NHVCFSADGEW-LLFTANLGAVMAEPVSWPN 574
+ DGE L + +G + P PN
Sbjct: 222 TIEAVNQDGETRTLVSGQMGQTLHSPSWSPN 252
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497
A P+ SPDG+++ + S +G ++L+V D GE +Q+T +WSP G
Sbjct: 390 QADPAWSPDGRYVTYSSDENGTQDLYVHDLQTGEN----QQVTARDDAVVAATWSPDGSK 445
Query: 498 IAFSSNRH 505
IAF N+H
Sbjct: 446 IAF-QNQH 452
>gi|190575562|ref|YP_001973407.1| translocation protein TolB [Stenotrophomonas maltophilia K279a]
gi|190013484|emb|CAQ47119.1| putative tolB protein precursor [Stenotrophomonas maltophilia
K279a]
Length = 439
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 29/178 (16%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A SDG T+++ + SWSP + Y S F+ + + I
Sbjct: 186 LMVADSDGFNPQTIVRSAEPLLSPSWSPDGSKLAYVS----FERGNSAIYI--------- 232
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ I + L G N+ P+ SPDG+ L RSG+ ++V+D + +
Sbjct: 233 ------QNIGTGARELVTSFRGINSAPAFSPDGRKLALTLSRSGNPEIYVMDLGSKQLT- 285
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
QLT+ IDT P+W+P G + F+S+R V Y + G R+ G
Sbjct: 286 ---QLTNHFAIDTEPTWAPDGSAVYFTSDRGGRPQV-----YKVGAGGGSAERVTFQG 335
>gi|153008549|ref|YP_001369764.1| translocation protein TolB [Ochrobactrum anthropi ATCC 49188]
gi|404320482|ref|ZP_10968415.1| translocation protein TolB [Ochrobactrum anthropi CTS-325]
gi|166229982|sp|A6WY81.1|TOLB_OCHA4 RecName: Full=Protein TolB; Flags: Precursor
gi|151560437|gb|ABS13935.1| Tol-Pal system beta propeller repeat TolB [Ochrobactrum anthropi
ATCC 49188]
Length = 443
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 78/179 (43%), Gaps = 34/179 (18%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
G P SPDG+ +V + G N++ +D N +LT+ IDT S+SP
Sbjct: 254 GMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRSTT----RLTNSQAIDTSASYSPD 309
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
G I FSS+R LYV+ DGS RRI +GS + +S G+
Sbjct: 310 GSQIVFSSDRGGRPQ-----LYVMGADGSNPRRISAG--DGS-------YSTPVWSPRGD 355
Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+ FT Q Q + V+K DGSG R LT +G+ N P W P ++
Sbjct: 356 LIAFT--------------KQSQGQFSIGVMKTDGSGERLLT-SGFHNEGPTWAPNGRV 399
>gi|424669875|ref|ZP_18106900.1| protein tolB [Stenotrophomonas maltophilia Ab55555]
gi|401071946|gb|EJP80457.1| protein tolB [Stenotrophomonas maltophilia Ab55555]
gi|456734371|gb|EMF59187.1| tolB protein precursor [Stenotrophomonas maltophilia EPM1]
Length = 439
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 107/280 (38%), Gaps = 57/280 (20%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A SDG T+++ + SWSP + Y S F+ + + I
Sbjct: 186 LMVADSDGFNPQTIVRSAEPLLSPSWSPDGSKLAYVS----FERGNSAIYI--------- 232
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ I + L G N+ P+ SPDG+ L RSG+ ++V+D + +
Sbjct: 233 ------QNIGTGARELVTSFRGINSAPAFSPDGRKLALTLSRSGNPEIYVMDLGSKQLT- 285
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI------ 528
QLT+ IDT P+W+P G + F+S+R V Y + G R+
Sbjct: 286 ---QLTNHFAIDTEPTWAPDGSAVYFTSDRGGRPQV-----YKVGAGGGSAERVTFQGNY 337
Query: 529 -----------HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQ 577
+A +GSG+ + V S+ G T + G++ P PN
Sbjct: 338 NAKPSVSYDGKKIAVAQGSGNSYK---IAVMDSSLGSPRWSTLSPGSLDESPSFAPNASM 394
Query: 578 PY--------GDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G LY V D +RL + PAW P
Sbjct: 395 VLYAAREGGRGVLYAVSADARVRQRLVLADGDVREPAWSP 434
>gi|336311912|ref|ZP_08566869.1| TolB protein precursor [Shewanella sp. HN-41]
gi|335864540|gb|EGM69626.1| TolB protein precursor [Shewanella sp. HN-41]
Length = 442
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 110/299 (36%), Gaps = 43/299 (14%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHV 387
+L G +F +V NH + + IA DG L++ + +WSP + +
Sbjct: 167 KLTGIRGAFLTRVSYVVVNHTQKAPYQLMIADYDGYNEQMLLRSPEPLMSPTWSPDGRRL 226
Query: 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
Y S F++++A + + +++ V+ G N P+ SPDG
Sbjct: 227 AYVS----FENKKAEIFV---------------QDLYTQVRTKVSSFPGINGAPAFSPDG 267
Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP 507
K L + G ++V+D I+++T+ IDT PSW P G + F+S R
Sbjct: 268 KSLAVTLSKDGQPEIYVIDIATKA----IKRITNHYAIDTEPSWFPDGKSLLFTSERGGK 323
Query: 508 DNVEAFSLY-----------------VIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS 550
+ L I PDG + I V G ++ R +N
Sbjct: 324 PQLYRVDLNSGKVTRETFEGEWNLGGSITPDGRSM--IFVNRTNGKFNIARMDLNTRFMQ 381
Query: 551 ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
L + A V + +Q L V DG RL E +P+W P
Sbjct: 382 VLTSTRLDESPSVAPNGTMVIYGTTYQGKQVLAAVSTDGRFKARLPAGQGEVKSPSWSP 440
>gi|448736032|ref|ZP_21718193.1| dipeptidyl aminopeptidase/acylaminoacyl peptidase [Halococcus
thailandensis JCM 13552]
gi|445806550|gb|EMA56671.1| dipeptidyl aminopeptidase/acylaminoacyl peptidase [Halococcus
thailandensis JCM 13552]
Length = 704
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 59/114 (51%), Gaps = 20/114 (17%)
Query: 488 MPSWSPKGDLIAFSSNRHN-PDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINH 546
P+W+P G+ IAF+SNR + PD+ + +Y I+PDG+GL R+ GDV +
Sbjct: 236 QPTWNPHGERIAFASNRTDRPDDSKVMDVYTIRPDGTGLNRL------TDGDV---QAMD 286
Query: 547 VCFSADGEWLLFTANLGAVMAEPVSWPNQFQPY---GDLYVVKLDGSGLRRLTW 597
+ +S DGE L F A +P +W Q Y GD Y L G R LTW
Sbjct: 287 LEWSPDGEQLAFAA------MDPENWCIPAQVYLWDGDGY-ESLTGDLDRTLTW 333
>gi|424885898|ref|ZP_18309509.1| tol-pal system beta propeller repeat protein TolB [Rhizobium
leguminosarum bv. trifolii WSM2012]
gi|393177660|gb|EJC77701.1| tol-pal system beta propeller repeat protein TolB [Rhizobium
leguminosarum bv. trifolii WSM2012]
Length = 435
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 74/173 (42%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + + N++ +D + IDT PS++P G+ IAF
Sbjct: 252 PRFSPDGQKVIMSLQQDANSNIYTMDLRSRTTTRLTSTAA----IDTSPSYAPDGNRIAF 307
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGSG RI G G R + +S G+ + FT
Sbjct: 308 ESDRGGQSQI-----YVMNADGSGQTRISF----GDG-----RYSTPVWSPRGDLIAFTK 353
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT G+ N P W P ++
Sbjct: 354 QSGGKFS--------------IGVMKPDGSGERILT-TGFHNEGPTWAPNGRV 391
>gi|357023695|ref|ZP_09085867.1| translocation protein TolB [Mesorhizobium amorphae CCNWGS0123]
gi|355544364|gb|EHH13468.1| translocation protein TolB [Mesorhizobium amorphae CCNWGS0123]
Length = 436
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 79/174 (45%), Gaps = 34/174 (19%)
Query: 441 PSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
P SPDG+ ++ R G+ N+F +D + +LT+ IDT PS+SP G +
Sbjct: 254 PRFSPDGQKVIMSLLRDDGNSNIFAMDLRSRSTT----RLTNSTAIDTSPSYSPDGSKVV 309
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559
F+S+R + YV+ DGSG RI S V +S G+ + FT
Sbjct: 310 FTSDRGGRAQI-----YVMGADGSGQTRISFGDGVYSTPV---------WSPRGDLIAFT 355
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G +FQ + V+K DGSG R L+ +G++ P W P ++
Sbjct: 356 KQTGG----------EFQ----IGVMKTDGSGERILS-SGFQQEGPTWAPNGRV 394
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 13/115 (11%)
Query: 416 DDNNREEIPCDVKILTKEETGN----NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471
DD N D++ + N + PS SPDG +VF S R G ++V+ A +
Sbjct: 270 DDGNSNIFAMDLRSRSTTRLTNSTAIDTSPSYSPDGSKVVFTSDRGGRAQIYVMGA---D 326
Query: 472 FNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526
+G R ++ G + + P WSP+GDLIAF+ F + V+K DGSG R
Sbjct: 327 GSGQTR-ISFGDGVYSTPVWSPRGDLIAFTKQTGGE-----FQIGVMKTDGSGER 375
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 39 LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA 98
L+DG +I +F + Q I ++S SG P++Y + + + EL+ + P F R
Sbjct: 200 LSDGRAIVLTPRFSPNR-QEITYMSYESGQPKVYLLQIETGQRELVGNFPGMTFAPRFSP 258
Query: 99 RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVAS 158
K+ + + S +++ DL++ TRLT +D SPS S G + S
Sbjct: 259 DGQKVIMSLLRDDGN------SNIFAMDLRSRSTTRLTNSTAIDTSPSYSPDGSKVVFTS 312
>gi|417843021|ref|ZP_12489098.1| Protein tolB [Haemophilus haemolyticus M21127]
gi|419839257|ref|ZP_14362670.1| Tol-Pal system beta propeller repeat protein TolB [Haemophilus
haemolyticus HK386]
gi|341950255|gb|EGT76844.1| Protein tolB [Haemophilus haemolyticus M21127]
gi|386909565|gb|EIJ74234.1| Tol-Pal system beta propeller repeat protein TolB [Haemophilus
haemolyticus HK386]
Length = 427
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 42/204 (20%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A DG ++ + + + +WSP + + Y S F+++++ + +
Sbjct: 184 VRVADYDGYNQFIVNRSSQPIMSPAWSPDGQRLAYVS----FENKKSQLVV--------- 230
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+++ + + G+N P+ SPDG L F S + G N++V+ + G
Sbjct: 231 ------QDLNSGARKVVASFPGHNGAPAFSPDGSRLAFASSQDGSLNIYVMSS----HGG 280
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
QLT G +T PSWSP G I F+S+R V Y + +G G + G
Sbjct: 281 APTQLTRGAGNNTEPSWSPDGSSILFTSDRSGSPQV-----YRMSANGGGATPV---GGR 332
Query: 535 GSGDVDRERINHVCFSADGEWLLF 558
GS + SADG+ L+
Sbjct: 333 GSAQI----------SADGKTLVM 346
>gi|197121110|ref|YP_002133061.1| TolB domain-containing protein [Anaeromyxobacter sp. K]
gi|226705865|sp|B4UDE1.1|TOLB_ANASK RecName: Full=Protein TolB; Flags: Precursor
gi|196170959|gb|ACG71932.1| TolB domain protein [Anaeromyxobacter sp. K]
Length = 434
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG+ + F S RSG ++V+ G R+LT + P WSP+GDLIAF
Sbjct: 293 PTWSPDGRRIAFVSDRSGTPQIYVM----GADGSGARRLTFQGNYNQTPQWSPRGDLIAF 348
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
++ D + F ++V+ PD + RI
Sbjct: 349 TAR----DERKVFDVFVVSPDSGAINRI 372
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 111/277 (40%), Gaps = 65/277 (23%)
Query: 348 HDFELNAG----IKIAKSDGSKRWTL---IKDRTAFYNSWSPTEKHVIYTSTGPIFQSER 400
H +E+ AG +K+ + DG+ +L + D Y YT IF +
Sbjct: 123 HLYEVRAGREVLVKLLRVDGADARSLAHRMADEIVRY-----------YTREPGIFATRI 171
Query: 401 ATVQIARVSFQL--DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG 458
A ++ R +++L D N++ + + IL P+ PDG+ ++ S RSG
Sbjct: 172 AAIRRGRGTWELVTQDMDGGNQQVLLSERSILMS--------PAWRPDGREILVTSYRSG 223
Query: 459 HKNLFVLDAVNGEFN--GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY 516
L+ + F G R G +SP G IAF+ + N + L+
Sbjct: 224 RPELWAYRFSDRAFRPLGRHRNAFGG-------VYSPDGSRIAFTVSEGNVTD-----LW 271
Query: 517 VIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQF 576
V+ DG G R++ + + DV +S DG + F ++
Sbjct: 272 VMSADGVGARKLT---SDPAIDV------SPTWSPDGRRIAFVSDRSGTP---------- 312
Query: 577 QPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+YV+ DGSG RRLT+ G N TP W P L
Sbjct: 313 ----QIYVMGADGSGARRLTFQGNYNQTPQWSPRGDL 345
Score = 46.6 bits (109), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 34/166 (20%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGS--KRWTLIKDRTAFYNS---WSPTEKHVIY 389
P++SPDG I F D I + +DGS +R T + YN WSP + +
Sbjct: 293 PTWSPDGRRIAFVSDRSGTPQIYVMGADGSGARRLTFQGN----YNQTPQWSPRGDLIAF 348
Query: 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF 449
T+ + ER + F + P + +T+++ N PS +P+G+
Sbjct: 349 TA-----RDERKVFDV----FVVSPDSGA--------INRITQDQGRTNEEPSWAPNGRL 391
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQ--LTDGPWIDTMPSWSP 493
++FR+ R+G L V DA GD RQ +T G P+W P
Sbjct: 392 MIFRTDRNGGIQLVVSDA-----RGD-RQTPVTSGKTDLAAPAWGP 431
>gi|62548395|gb|AAX86840.1| TolB [Aggregatibacter actinomycetemcomitans]
Length = 183
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 58/123 (47%), Gaps = 22/123 (17%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G+N P+ SPDG L F S + G N++V + +G+ + QLT G +T PSWSP G
Sbjct: 2 GHNGAPAFSPDGSRLAFASSKDGVLNIYVTNLGSGQ----VSQLTSGAGNNTEPSWSPDG 57
Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW 555
I F+S+R V Y + G G I G GSG + S+DG
Sbjct: 58 QSIVFTSDRGGSPQV-----YRMSASGGGASLI---GGRGSGQI----------SSDGNL 99
Query: 556 LLF 558
L+
Sbjct: 100 LVM 102
>gi|300715889|ref|YP_003740692.1| protein TolB (translocation of group A colicins) [Erwinia
billingiae Eb661]
gi|299061725|emb|CAX58841.1| Protein TolB (Translocation of group A colicins) [Erwinia
billingiae Eb661]
Length = 430
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ N QLTDG + T P+W P
Sbjct: 245 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQIN----QLTDGRYNSTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS-GDVDRERINHVCFSADG 553
+A++S++ + Y I G +R+ G + DV + + V S +G
Sbjct: 301 SLAYTSDQAGRPQI-----YKISASGGTAQRLTWEGGQNQDADVSSDGKSLVMISTNG 353
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 76/180 (42%), Gaps = 32/180 (17%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNS----WSPTE 384
R NG+ P+FSPDG + F + + + + L R YNS W P
Sbjct: 244 RHNGA-PAFSPDGTKLAFALSKTGSLNLYVMDLASGQINQLTDGR---YNSTEPTWFPDS 299
Query: 385 KHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCS 444
+ + YTS Q+ R QI ++S + + + E G N S
Sbjct: 300 QSLAYTSD----QAGRP--QIYKIS-----ASGGTAQRLTW--------EGGQNQDADVS 340
Query: 445 PDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
DGK LV S G +++ D G ++QLTD ++D PS +P G ++ +SS +
Sbjct: 341 SDGKSLVMISTNGGAQHVARQDLETGA----VQQLTD-TFLDETPSLAPNGTMVIYSSTQ 395
>gi|220915811|ref|YP_002491115.1| TolB domain-containing protein [Anaeromyxobacter dehalogenans
2CP-1]
gi|254764837|sp|B8JD21.1|TOLB_ANAD2 RecName: Full=Protein TolB; Flags: Precursor
gi|219953665|gb|ACL64049.1| TolB domain protein [Anaeromyxobacter dehalogenans 2CP-1]
Length = 434
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG+ + F S RSG ++V+ G R+LT + P WSP+GDLIAF
Sbjct: 293 PTWSPDGRRIAFVSDRSGTPQIYVM----GADGSGARRLTFQGNYNQTPQWSPRGDLIAF 348
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
++ D + F ++V+ PD + RI
Sbjct: 349 TAR----DERKVFDVFVVSPDSGAINRI 372
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 112/277 (40%), Gaps = 65/277 (23%)
Query: 348 HDFELNAG----IKIAKSDGSKRWTL---IKDRTAFYNSWSPTEKHVIYTSTGPIFQSER 400
H +E+ AG +K+ + DG+ +L + D Y YT IF +
Sbjct: 123 HLYEVRAGREVLVKLLRVDGADARSLAHRMADEIVRY-----------YTREPGIFATRI 171
Query: 401 ATVQIARVSFQL--DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG 458
A ++ R +++L D N++ + + IL P+ PDG+ ++ S RSG
Sbjct: 172 AAIRRGRGTWELVTQDMDGGNQQVLLSERSILMS--------PAWRPDGREILVTSYRSG 223
Query: 459 HKNLFVLDAVNGEFN--GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY 516
L+ + F G R G +SP G IAF+ + N + L+
Sbjct: 224 RPELWAYRFSDRAFRPLGRHRNAFGG-------VYSPDGSRIAFTVSEGNVTD-----LW 271
Query: 517 VIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQF 576
V+ DG+G R++ + + DV +S DG + F ++
Sbjct: 272 VMSADGAGARKLT---SDPAIDV------SPTWSPDGRRIAFVSDRSGTP---------- 312
Query: 577 QPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+YV+ DGSG RRLT+ G N TP W P L
Sbjct: 313 ----QIYVMGADGSGARRLTFQGNYNQTPQWSPRGDL 345
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 102/260 (39%), Gaps = 42/260 (16%)
Query: 245 CFTPAAFHDGKRLAVATRRKNR-NFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRG 303
+PA DG+ + V + R R D P H N F S F
Sbjct: 203 LMSPAWRPDGREILVTSYRSGRPELWAYRFSDRAFRPLGRHRNAFGGVYSPDGSRIAF-- 260
Query: 304 ESTEGQSTIPHLEPVASPVKELRMLRLNGSF---PSFSPDGGLIVFNHDFELNAGIKIAK 360
T + + L +++ R L + + P++SPDG I F D I +
Sbjct: 261 --TVSEGNVTDLWVMSADGAGARKLTSDPAIDVSPTWSPDGRRIAFVSDRSGTPQIYVMG 318
Query: 361 SDGS--KRWTLIKDRTAFYNS---WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS 415
+DGS +R T + YN WSP + +T+ + ER + F + P
Sbjct: 319 ADGSGARRLTFQGN----YNQTPQWSPRGDLIAFTA-----RDERKVFDV----FVVSPD 365
Query: 416 DDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGD 475
+ +T+++ N PS +P+G+ ++FR+ R+G L V DA GD
Sbjct: 366 SGA--------INRITQDQGRTNEEPSWAPNGRLMIFRTDRNGGIQLVVSDA-----RGD 412
Query: 476 IRQ--LTDGPWIDTMPSWSP 493
RQ +T G P+W P
Sbjct: 413 -RQTPVTSGKTDLAAPAWGP 431
>gi|417304963|ref|ZP_12091957.1| peptidase M28 [Rhodopirellula baltica WH47]
gi|327538740|gb|EGF25390.1| peptidase M28 [Rhodopirellula baltica WH47]
Length = 1074
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 121/281 (43%), Gaps = 66/281 (23%)
Query: 382 PTEKHVIYTSTGPIFQSER---------ATVQIARVSFQLDPSDDNNREEI----PCDVK 428
P + V++ ST SER A+ + R S+ DP+ + E+ P K
Sbjct: 138 PNGEKVLFASTHADANSERLQKEELDFRASGESRRYSWDYDPNYELYAAELDQIEPGTTK 197
Query: 429 ILTK--EETGNNAFPSCSPDGKFLVFRSGRSGHKN--------------LFVLDAVNGEF 472
LT G +A S SPDGK +VF S R+ + F++D
Sbjct: 198 GLTALTSAMGYDAEASYSPDGKQIVFASNRAAYSRELTEREQEQFERDPAFMIDLYIMNA 257
Query: 473 NG-DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA 531
+G ++++LT+ P D P +SP G I + R P+ A ++ +K DGS ++R+
Sbjct: 258 DGSNVKRLTNEPGYDGGPFFSPDGQRICW--RRFAPNGATA-EIFTMKTDGSDVQRL--- 311
Query: 532 GPEGSGDVDRERINHVC----FSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKL 587
IN + + GE+L+FT N + F + +LY+V+
Sbjct: 312 ----------TEINAMSWAPFYHPSGEFLVFTTN-----------KHGFANF-ELYLVRA 349
Query: 588 DGSG--LRRLTWNGYENGTPAWHP-GNQLDLGKLRLEDDIG 625
DG G +R T G+ +G P + P GNQL R+ D G
Sbjct: 350 DGEGEPVRLTTTEGF-DGLPVFLPNGNQLSWTTTRVVDSDG 389
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 15/151 (9%)
Query: 379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS---DDNNREEIPCDVKILTKEET 435
S+SP K +++ S + R + + F+ DP+ D +VK LT E
Sbjct: 213 SYSPDGKQIVFASNRAAYS--RELTEREQEQFERDPAFMIDLYIMNADGSNVKRLTNE-P 269
Query: 436 GNNAFPSCSPDGKFLVFR--SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
G + P SPDG+ + +R + +F + +G D+++LT+ + P + P
Sbjct: 270 GYDGGPFFSPDGQRICWRRFAPNGATAEIFTM-KTDGS---DVQRLTEINAMSWAPFYHP 325
Query: 494 KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG 524
G+ + F++N+H N F LY+++ DG G
Sbjct: 326 SGEFLVFTTNKHGFAN---FELYLVRADGEG 353
>gi|331672262|ref|ZP_08373053.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TA280]
gi|331070457|gb|EGI41821.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TA280]
Length = 430
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNVNGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSNG 353
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNVNGGAPQRITWEGSQN 334
>gi|373467484|ref|ZP_09558781.1| Tol-Pal system beta propeller repeat protein TolB [Haemophilus sp.
oral taxon 851 str. F0397]
gi|371758685|gb|EHO47448.1| Tol-Pal system beta propeller repeat protein TolB [Haemophilus sp.
oral taxon 851 str. F0397]
Length = 427
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 42/204 (20%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A DG ++ + + + +WSP + + Y S F+++++ + +
Sbjct: 184 VRVADYDGYNQFIVNRSSQPIMSPAWSPDGQRLAYVS----FENKKSQLVV--------- 230
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+++ + + G+N P+ SPDG L F S + G N++V+ + G
Sbjct: 231 ------QDLNSGARKVVASFPGHNGAPAFSPDGSRLAFASSQDGSLNIYVMSS----HGG 280
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
QLT G +T PSWSP G I F+S+R V Y + +G G + G
Sbjct: 281 APTQLTRGAGNNTEPSWSPDGSSILFTSDRSGSPQV-----YRMSANGGGATPV---GGR 332
Query: 535 GSGDVDRERINHVCFSADGEWLLF 558
GS + SADG+ L+
Sbjct: 333 GSAQI----------SADGKTLVM 346
>gi|325579033|ref|ZP_08148989.1| tol-Pal system beta propeller repeat protein TolB [Haemophilus
parainfluenzae ATCC 33392]
gi|325159268|gb|EGC71402.1| tol-Pal system beta propeller repeat protein TolB [Haemophilus
parainfluenzae ATCC 33392]
Length = 427
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 24/160 (15%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A DG ++ + + + +WSP K + Y S F+++++ + +
Sbjct: 184 VRVADYDGYNQFIVNRSSQPIMSPAWSPDGKRLAYVS----FENKKSQLVV--------- 230
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+++ + + G+N P+ SPDG L F S + G N++V+ G G
Sbjct: 231 ------QDLGSGSRKVVASFPGHNGAPAFSPDGSKLAFASSQDGLLNIYVM----GSNGG 280
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFS 514
QLT G +T PSWSP G I F+S+R V S
Sbjct: 281 TPTQLTRGAGNNTEPSWSPDGSSILFTSDRSGSPQVYRMS 320
>gi|145638708|ref|ZP_01794317.1| translocation protein TolB precursor [Haemophilus influenzae
PittII]
gi|145272303|gb|EDK12211.1| translocation protein TolB precursor [Haemophilus influenzae
PittII]
Length = 143
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 80/178 (44%), Gaps = 41/178 (23%)
Query: 379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN 438
+WSP + + Y S F+++++ + + +++ + + G+N
Sbjct: 4 AWSPDGQRLAYVS----FENKKSQLVV---------------QDLNSGTRKVVASFQGHN 44
Query: 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
P+ SPDG L F S R G N++V+ A NG G QLT G +T P+WSP G+ I
Sbjct: 45 GAPAFSPDGSRLAFASSRDGVLNIYVMGA-NG---GTPTQLTSGAGNNTEPAWSPDGNSI 100
Query: 499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
F+S+R S V + D SG V G GS + SADG+ L
Sbjct: 101 LFTSDRSG-------SPQVYRMDASG-GSATVVGGRGSAQI----------SADGKTL 140
>gi|116688823|ref|YP_834446.1| translocation protein TolB [Burkholderia cenocepacia HI2424]
gi|254246220|ref|ZP_04939541.1| TolB [Burkholderia cenocepacia PC184]
gi|166229976|sp|A0K4X6.1|TOLB_BURCH RecName: Full=Protein TolB; Flags: Precursor
gi|116646912|gb|ABK07553.1| TolB, N-terminal domain protein [Burkholderia cenocepacia HI2424]
gi|124870996|gb|EAY62712.1| TolB [Burkholderia cenocepacia PC184]
Length = 431
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 24/150 (16%)
Query: 356 IKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG + R L +WSP+ V Y S F+ ++ V I
Sbjct: 178 LQISDSDGQNARIALSSTEPIISPAWSPSGTKVAYVS----FERKKPIVYI--------- 224
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++P + + ++ GNN+ P+ SPD L +G+ ++ ++A NG G
Sbjct: 225 ------HDLPTGRRYMVSDQKGNNSAPAWSPDSNTLAVALSLTGNTQIYTVNA-NG---G 274
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
+R+LT IDT P +SP G I F+S+R
Sbjct: 275 GLRRLTQSSSIDTEPFYSPDGRWIYFTSDR 304
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 16/123 (13%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+++ F S R G ++ + A GE G +++T +T P SP G L+A+
Sbjct: 289 PFYSPDGRWIYFTSDRGGAPQIYRMPA-QGESAGAAQRVTFTGSYNTSPRVSPDGKLLAY 347
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S F LYV + + + +R+ F+A+G+++L+
Sbjct: 348 ISRTGG-----GFKLYV--------QDLQTGAANAITNTNRDE--SPSFAANGQYVLYAT 392
Query: 561 NLG 563
G
Sbjct: 393 QSG 395
>gi|170732122|ref|YP_001764069.1| translocation protein TolB [Burkholderia cenocepacia MC0-3]
gi|226705868|sp|B1JWH3.1|TOLB_BURCC RecName: Full=Protein TolB; Flags: Precursor
gi|169815364|gb|ACA89947.1| Tol-Pal system beta propeller repeat protein TolB [Burkholderia
cenocepacia MC0-3]
Length = 431
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 24/150 (16%)
Query: 356 IKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG + R L +WSP+ V Y S F+ ++ V I
Sbjct: 178 LQISDSDGQNARIALSSTEPIISPAWSPSGTKVAYVS----FERKKPIVYI--------- 224
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++P + + ++ GNN+ P+ SPD L +G+ ++ ++A NG G
Sbjct: 225 ------HDLPTGRRYMVSDQKGNNSAPAWSPDSNTLAVALSLTGNTQIYTVNA-NG---G 274
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
+R+LT IDT P +SP G I F+S+R
Sbjct: 275 GLRRLTQSSSIDTEPFYSPDGRWIYFTSDR 304
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 16/123 (13%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+++ F S R G ++ + A GE G +++T +T P SP G L+A+
Sbjct: 289 PFYSPDGRWIYFTSDRGGAPQIYRMPA-QGESAGAAQRVTFTGSYNTSPRVSPDGKLLAY 347
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S F LYV + + + +R+ F+A+G++LL+
Sbjct: 348 ISRTGG-----GFKLYV--------QDLQTGAANAITNTNRDE--SPSFAANGQYLLYAT 392
Query: 561 NLG 563
G
Sbjct: 393 QSG 395
>gi|408822133|ref|ZP_11207023.1| translocation protein TolB [Pseudomonas geniculata N1]
Length = 439
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 29/178 (16%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A SDG T+++ + SWSP + Y S F+ + + I
Sbjct: 186 LMVADSDGFNPQTIVRSAEPLLSPSWSPDGSKLAYVS----FERGNSAIYI--------- 232
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ I + L G N+ P+ SPDG+ L RSG+ ++V+D + +
Sbjct: 233 ------QNIGTGARELVTSFRGINSAPAFSPDGRKLALTLSRSGNPEIYVMDLGSKQLT- 285
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
QLT+ IDT P+W+P G + F+S+R V Y + G R+ G
Sbjct: 286 ---QLTNHFAIDTEPTWAPDGSAVYFTSDRGGRPQV-----YKVGAGGGSAERVTFQG 335
>gi|345868005|ref|ZP_08820001.1| WD40-like Beta Propeller Repeat family protein [Bizionia
argentinensis JUB59]
gi|344047487|gb|EGV43115.1| WD40-like Beta Propeller Repeat family protein [Bizionia
argentinensis JUB59]
Length = 376
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 104/240 (43%), Gaps = 53/240 (22%)
Query: 411 QLDPSDDNNREEIPCD-VKILTKEETGNNAFP----------SCS---PDGKFLVFRSG- 455
QL +N + E+ CD + ++ E+T + P +C+ PD K +++ S
Sbjct: 79 QLVFQSNNTKWELNCDQMFVMDAEDTFKDKIPQMVSTGKGRTTCAYFLPDNKHIIYASTH 138
Query: 456 -----------RSGHKNLFVL----DAVNGEFNGDIR-QLTDGPWIDTMPSWSPKGDLIA 499
R K ++ + D + +G+I QLT+ D P+ SP+GD I
Sbjct: 139 LVDDNCPEVPERRDGKYIWPIYESYDIFVADLDGNITAQLTNEVGYDAEPTVSPQGDKIV 198
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSADGEWLLF 558
F+S+R LY + DG+ +++I G +G FS DG L+F
Sbjct: 199 FTSDRSGD-----LELYTMNLDGTNVKQITFELGYDGGA----------FFSPDGTKLVF 243
Query: 559 TANLGAVMAEPVSWPNQF-----QPYG-DLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQ 612
++ AE + N QP +LY+ DGS LR+LT G N +P +HP +
Sbjct: 244 RSSRPNTEAEIKEYKNLLAEGLVQPTNMELYICNADGSDLRQLTDLGNANWSPFFHPSGE 303
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 97/237 (40%), Gaps = 50/237 (21%)
Query: 382 PTEKHVIYTSTGPIFQS--ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNA 439
P KH+IY ST + + E + + + + S D ++ ++ E G +A
Sbjct: 127 PDNKHIIYASTHLVDDNCPEVPERRDGKYIWPIYESYDIFVADLDGNITAQLTNEVGYDA 186
Query: 440 FPSCSPDGKFLVFRSGRSGHKNLFV--LDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497
P+ SP G +VF S RSG L+ LD N ++Q+T D +SP G
Sbjct: 187 EPTVSPQGDKIVFTSDRSGDLELYTMNLDGTN------VKQITFELGYDGGAFFSPDGTK 240
Query: 498 IAFSSNRHN------------------PDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV 539
+ F S+R N P N+E LY+ DGS LR++ G
Sbjct: 241 LVFRSSRPNTEAEIKEYKNLLAEGLVQPTNME---LYICNADGSDLRQLTDLGNANWSPF 297
Query: 540 DRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596
F GE +LF++N + P +LY++ +DGS L R+T
Sbjct: 298 ---------FHPSGEKILFSSNHESERGFPF----------NLYMIDIDGSNLERIT 335
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 444 SPDGKFLVFRSGR-------SGHKNLF---VLDAVNGEF------NGDIRQLTDGPWIDT 487
SPDG LVFRS R +KNL ++ N E D+RQLTD +
Sbjct: 235 SPDGTKLVFRSSRPNTEAEIKEYKNLLAEGLVQPTNMELYICNADGSDLRQLTDLGNANW 294
Query: 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV 547
P + P G+ I FSSN H + F+LY+I DGS L RI + + V
Sbjct: 295 SPFFHPSGEKILFSSN-HESERGFPFNLYMIDIDGSNLERITHSETFDAFPV-------- 345
Query: 548 CFSADGEWLLFTAN 561
FS DG+ L+F++N
Sbjct: 346 -FSNDGKKLIFSSN 358
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 26/186 (13%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSK----RWTLIKDRTAFYNSWSPTEKHVIYT 390
P+ SP G IVF D + + DG+ + L D AF+ SP +++
Sbjct: 188 PTVSPQGDKIVFTSDRSGDLELYTMNLDGTNVKQITFELGYDGGAFF---SPDGTKLVFR 244
Query: 391 STGPIFQSERATVQIARVSFQLDPSDDNNREEIPC-----DVKILTKEETGN-NAFPSCS 444
S+ P ++E + + P+ N E C D++ LT + GN N P
Sbjct: 245 SSRPNTEAEIKEYKNLLAEGLVQPT---NMELYICNADGSDLRQLT--DLGNANWSPFFH 299
Query: 445 PDGKFLVFRSGRSGHK----NLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P G+ ++F S + NL+++D ++G ++ ++T D P +S G + F
Sbjct: 300 PSGEKILFSSNHESERGFPFNLYMID-IDG---SNLERITHSETFDAFPVFSNDGKKLIF 355
Query: 501 SSNRHN 506
SSNR+N
Sbjct: 356 SSNRNN 361
>gi|417840776|ref|ZP_12486884.1| Protein tolB [Haemophilus haemolyticus M19501]
gi|341950587|gb|EGT77174.1| Protein tolB [Haemophilus haemolyticus M19501]
Length = 435
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 42/204 (20%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A DG ++ + + + +WSP + + Y S F+++++ + +
Sbjct: 192 VRVADYDGYNQFIVNRSSQPIMSPAWSPDGQRLAYVS----FENKKSQLVV--------- 238
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+++ + + G+N P+ SPDG L F S + G N++V+ + G
Sbjct: 239 ------QDLNSGARKVVASFPGHNGAPAFSPDGSRLAFASSQDGSLNIYVMSS----HGG 288
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
QLT G +T PSWSP G I F+S+R V Y + +G G + G
Sbjct: 289 APTQLTRGAGNNTEPSWSPDGSSILFTSDRSGSPQV-----YRMSANGGGATPV---GGR 340
Query: 535 GSGDVDRERINHVCFSADGEWLLF 558
GS + SADG+ L+
Sbjct: 341 GSAQI----------SADGKTLVM 354
>gi|386313386|ref|YP_006009551.1| TonB biopolymer transport system periplasmic component, TolB
[Shewanella putrefaciens 200]
gi|319426011|gb|ADV54085.1| TonB biopolymer transport system periplasmic component, TolB
[Shewanella putrefaciens 200]
Length = 442
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 94/230 (40%), Gaps = 50/230 (21%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHV 387
+L G +F +V NH + + IA DG L++ + +WSP + +
Sbjct: 167 KLTGIRGAFLTRISYVVVNHTQKAPYQLMIADYDGFNEQMLLRSPEPLMSPTWSPDGRRL 226
Query: 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
Y S F++++A + + +++ V+ G N P+ SPDG
Sbjct: 227 AYVS----FENKKAEIFV---------------QDLYTQVRTKVSSFPGINGAPAFSPDG 267
Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP 507
K L + G ++V+D I+++T+ IDT PSW P G + F+S R
Sbjct: 268 KSLAVTLSKDGQPEIYVIDIATKA----IKRITNHYAIDTEPSWYPDGKSLLFTSERGG- 322
Query: 508 DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL 557
KP L R+ +A SG V RE + +GEW L
Sbjct: 323 -----------KPQ---LYRVDLA----SGKVTRE-------TFEGEWNL 347
>gi|82776018|ref|YP_402365.1| translocation protein TolB [Shigella dysenteriae Sd197]
gi|119371061|sp|Q32II1.1|TOLB_SHIDS RecName: Full=Protein TolB; Flags: Precursor
gi|81240166|gb|ABB60876.1| periplasmic protein [Shigella dysenteriae Sd197]
Length = 430
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSNG 353
Score = 42.0 bits (97), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|415814935|ref|ZP_11506533.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
LT-68]
gi|323170861|gb|EFZ56511.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
LT-68]
Length = 430
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSNG 353
Score = 42.0 bits (97), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|444970437|ref|ZP_21287804.1| WD40-like Beta Propeller Repeat family protein, partial
[Escherichia coli 99.1793]
gi|444578870|gb|ELV54891.1| WD40-like Beta Propeller Repeat family protein, partial
[Escherichia coli 99.1793]
Length = 210
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 18/127 (14%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497
N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 26 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQN 81
Query: 498 IAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL 557
+AF+S++ V Y + +G +RI EGS + D + S+DG++++
Sbjct: 82 LAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFMV 127
Query: 558 FTANLGA 564
++ G
Sbjct: 128 MVSSNGG 134
>gi|417128805|ref|ZP_11975592.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
97.0246]
gi|386143761|gb|EIG90237.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
97.0246]
Length = 430
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSNG 353
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|345429677|ref|YP_004822795.1| periplasmic protein [Haemophilus parainfluenzae T3T1]
gi|301155738|emb|CBW15206.1| periplasmic protein [Haemophilus parainfluenzae T3T1]
Length = 427
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 24/160 (15%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A DG ++ + + + +WSP K + Y S F+++++ + +
Sbjct: 184 VRVADYDGYNQFIVNRSSQPIMSPAWSPDGKRLAYVS----FENKKSQLVV--------- 230
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+++ + + G+N P+ SPDG L F S + G N++V+ + NG G
Sbjct: 231 ------QDLGSGSRKVVASFPGHNGAPAFSPDGSKLAFASSQDGLLNIYVMSS-NG---G 280
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFS 514
QLT G +T PSWSP G I F+S+R V S
Sbjct: 281 KPTQLTSGAGNNTEPSWSPDGSSILFTSDRSGSPQVYRMS 320
>gi|300310549|ref|YP_003774641.1| periplasmic protein of the Tol biopolymer transport system protein
[Herbaspirillum seropedicae SmR1]
gi|300073334|gb|ADJ62733.1| periplasmic component of the Tol biopolymer transport system
protein [Herbaspirillum seropedicae SmR1]
Length = 428
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 113/278 (40%), Gaps = 55/278 (19%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A +DG ++ + SWSP V Y S F+ ++ V I +
Sbjct: 179 LEVADADGEGTQVALRSNEPIISPSWSPDGTKVAYVS----FEMKKPVVYIQNLV----- 229
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ I + K G+N+ P+ SPDG L R G ++V +N + +G
Sbjct: 230 ---TRQRSIVANFK-------GSNSAPAWSPDGSRLAVALTRDGLTQVYV---INADGSG 276
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-- 532
+R+LT+ IDT P +SP G I F+S+R V Y + DG +R+ G
Sbjct: 277 -LRRLTNSAGIDTEPQFSPDGGSIYFTSDRSGGPQV-----YKVGLDGGSPQRVTFNGSY 330
Query: 533 ---PEGSGDVDRERINHVCFSADGEWLLFTANL----------GAVMAEPVSWPN-QFQP 578
P S D + DG++ L+ +L G+ P PN ++
Sbjct: 331 NISPRISPD---GKTLAFISRRDGQFQLYALDLTNGQEIRLSDGSRDQSPSFAPNGKYIM 387
Query: 579 Y-------GDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
Y G L VV +DG +RLT + P W P
Sbjct: 388 YATEAGRRGSLAVVSVDGRIKQRLTTQAGDIREPTWGP 425
>gi|206561547|ref|YP_002232312.1| translocation protein TolB [Burkholderia cenocepacia J2315]
gi|226705869|sp|B4EDC0.1|TOLB_BURCJ RecName: Full=Protein TolB; Flags: Precursor
gi|198037589|emb|CAR53527.1| putative periplasmic TolB protein [Burkholderia cenocepacia J2315]
Length = 431
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 24/150 (16%)
Query: 356 IKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG + R L +WSP+ V Y S F+ ++ V I
Sbjct: 178 LQISDSDGQNARIALSSTEPIISPAWSPSGTKVAYVS----FERKKPIVYI--------- 224
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++P + + ++ GNN+ P+ SPD L +G+ ++ ++A NG G
Sbjct: 225 ------HDLPTGRRYMVSDQKGNNSAPAWSPDSNTLAVALSLTGNTQIYTVNA-NG---G 274
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
+R+LT IDT P +SP G I F+S+R
Sbjct: 275 GLRRLTQSSSIDTEPFYSPDGRWIYFTSDR 304
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 16/123 (13%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+++ F S R G ++ + A GE G +++T +T P SP G L+A+
Sbjct: 289 PFYSPDGRWIYFTSDRGGAPQIYRMPA-QGESAGAAQRVTFTGSYNTSPRVSPDGKLLAY 347
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S F LYV + + + +R+ F+A+G++LL+
Sbjct: 348 ISRTGG-----GFKLYV--------QDLQTGAANAITNTNRDE--SPSFAANGQYLLYAT 392
Query: 561 NLG 563
G
Sbjct: 393 QSG 395
>gi|432636019|ref|ZP_19871902.1| protein tolB [Escherichia coli KTE81]
gi|431173390|gb|ELE73469.1| protein tolB [Escherichia coli KTE81]
Length = 430
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLGA 564
+ ++ G
Sbjct: 347 VMVSSNGG 354
Score = 42.0 bits (97), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|424837101|ref|ZP_18261738.1| translocation protein TolB [Shigella flexneri 5a str. M90T]
gi|383466153|gb|EID61174.1| translocation protein TolB [Shigella flexneri 5a str. M90T]
Length = 430
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS-GDVDRERINHVCFSADG 553
+AF+S++ V Y + +G +RI G + DV + V SA+G
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSANG 353
Score = 42.0 bits (97), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|170769037|ref|ZP_02903490.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia
albertii TW07627]
gi|170122109|gb|EDS91040.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia
albertii TW07627]
Length = 430
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSNG 353
Score = 42.0 bits (97), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|120599219|ref|YP_963793.1| translocation protein TolB [Shewanella sp. W3-18-1]
gi|146292707|ref|YP_001183131.1| translocation protein TolB [Shewanella putrefaciens CN-32]
gi|166988084|sp|A4Y5U9.1|TOLB_SHEPC RecName: Full=Protein TolB; Flags: Precursor
gi|166988086|sp|A1RKP4.1|TOLB_SHESW RecName: Full=Protein TolB; Flags: Precursor
gi|120559312|gb|ABM25239.1| TolB, N-terminal domain protein [Shewanella sp. W3-18-1]
gi|145564397|gb|ABP75332.1| TolB, N-terminal domain protein [Shewanella putrefaciens CN-32]
Length = 442
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 94/230 (40%), Gaps = 50/230 (21%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHV 387
+L G +F +V NH + + IA DG L++ + +WSP + +
Sbjct: 167 KLTGIRGAFLTRISYVVVNHTQKAPYQLMIADYDGFNEQMLLRSPEPLMSPTWSPDGRRL 226
Query: 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
Y S F++++A + + +++ V+ G N P+ SPDG
Sbjct: 227 AYVS----FENKKAEIFV---------------QDLYTQVRTKVSSFPGINGAPAFSPDG 267
Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP 507
K L + G ++V+D I+++T+ IDT PSW P G + F+S R
Sbjct: 268 KSLAVTLSKDGQPEIYVIDIATKA----IKRITNHYAIDTEPSWYPDGKSLLFTSERGG- 322
Query: 508 DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL 557
KP L R+ +A SG V RE + +GEW L
Sbjct: 323 -----------KPQ---LYRVDLA----SGKVTRE-------TFEGEWNL 347
>gi|371910572|dbj|BAL44387.1| serine/threonine protein kinase [uncultured bacterium]
gi|374853683|dbj|BAL56585.1| serine/threonine protein kinase [uncultured Chloroflexi bacterium]
Length = 715
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 118/300 (39%), Gaps = 53/300 (17%)
Query: 319 ASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFEL------NAGIKIAKSDGSKRWTLIKD 372
S V++L L P F+PDG +VF + A + + +DGS L
Sbjct: 456 GSDVRQLTNLPEGACQPEFAPDGTRLVFISPCKAPQEKYPGAALYMMNADGSGLMVLTNV 515
Query: 373 RTA-FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT 431
F +WSP+ + + +TS + ++ + I LD D++ + +L
Sbjct: 516 PGGDFDPAWSPSGRKIAFTS----LRQGKSDLYI------LDLGDNSV-----TPLNVLE 560
Query: 432 KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491
+ +T + P+ SPDGK+L F R G ++ ++ GE R D + D P W
Sbjct: 561 RGDT-EASQPTWSPDGKWLAFTRQRFGSYQIWKINLETGEKEQLTRSGPD--YKDFSPVW 617
Query: 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH--VAGPEGSGDVDRERINHVCF 549
SP G + FS V A +I D L + + P + + F
Sbjct: 618 SPDGMYLLFSQRLIGQPIVRA---RLIPLDSGTLSYANFGIISP----------VEGISF 664
Query: 550 SADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
SADG W++F E V D+Y G GL RLT + PAW P
Sbjct: 665 SADGFWVVF---------ESVDEKGNR----DIYRALATGGGLVRLTSEPGSDFDPAWRP 711
Score = 46.2 bits (108), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 87/201 (43%), Gaps = 32/201 (15%)
Query: 425 CDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLF---VLDAVNGEFNGDIRQLTD 481
DV+ LT G P +PDG LVF S + + L +N + +G + LT+
Sbjct: 457 SDVRQLTNLPEGACQ-PEFAPDGTRLVFISPCKAPQEKYPGAALYMMNADGSG-LMVLTN 514
Query: 482 GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDR 541
P D P+WSP G IAF+S R + LY++ + + ++V GD +
Sbjct: 515 VPGGDFDPAWSPSGRKIAFTSLRQGKSD-----LYILDLGDNSVTPLNVL---ERGDTE- 565
Query: 542 ERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNG-- 599
+ +S DG+WL FT +F Y ++ + L+ +LT +G
Sbjct: 566 --ASQPTWSPDGKWLAFTR-------------QRFGSY-QIWKINLETGEKEQLTRSGPD 609
Query: 600 YENGTPAWHPGNQLDLGKLRL 620
Y++ +P W P L RL
Sbjct: 610 YKDFSPVWSPDGMYLLFSQRL 630
>gi|94311607|ref|YP_584817.1| translocation protein TolB [Cupriavidus metallidurans CH34]
gi|119371053|sp|Q1LJX8.1|TOLB_RALME RecName: Full=Protein TolB; Flags: Precursor
gi|93355459|gb|ABF09548.1| periplasmic protein [Cupriavidus metallidurans CH34]
Length = 446
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 24/148 (16%)
Query: 358 IAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD 416
I+ SDG + + L +WSP + V Y S F++++ V +
Sbjct: 197 ISDSDGQNAQIALTSTEPIISPAWSPDGRRVAYVS----FEAKKPVVYV----------- 241
Query: 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI 476
++ +++ + GNN+ PS SPDG+ L R G+ ++ VN + +G +
Sbjct: 242 ----HDLATGKRVVVSNQKGNNSAPSWSPDGQHLAVSLSRDGNTQIY---QVNADGSG-L 293
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
R+LT IDT P +SP G I F+S+R
Sbjct: 294 RRLTRSSAIDTEPQFSPDGRSIYFTSDR 321
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 73/173 (42%), Gaps = 23/173 (13%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIY 389
N S PS+SPDG + + + N I +DGS L + +SP + + +
Sbjct: 258 NNSAPSWSPDGQHLAVSLSRDGNTQIYQVNADGSGLRRLTRSSAIDTEPQFSPDGRSIYF 317
Query: 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF 449
TS QI R+ P+ EE ++ K N P SPDGK+
Sbjct: 318 TS------DRGGAPQIYRM-----PASG---EESGAAQRVTFKGSY--NVSPRISPDGKY 361
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
L + S RSG L + D NGD+ LTD D PS++ G I +++
Sbjct: 362 LAYIS-RSGGFRLQLQDLS----NGDVTSLTD-TTNDESPSFAANGKYILYAT 408
>gi|442599531|ref|ZP_21017249.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Escherichia
coli O5:K4(L):H4 str. ATCC 23502]
gi|441651801|emb|CCQ02746.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Escherichia
coli O5:K4(L):H4 str. ATCC 23502]
Length = 431
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 246 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 302 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 347
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 348 VMVSSNG 354
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 262 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 307
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 308 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 335
>gi|417595667|ref|ZP_12246330.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3030-1]
gi|345359987|gb|EGW92160.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3030-1]
Length = 430
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLGA 564
+ ++ G
Sbjct: 347 VMVSSNGG 354
Score = 42.0 bits (97), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGS----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|343519116|ref|ZP_08756101.1| Tol-Pal system beta propeller repeat protein TolB [Haemophilus
pittmaniae HK 85]
gi|343392882|gb|EGV05442.1| Tol-Pal system beta propeller repeat protein TolB [Haemophilus
pittmaniae HK 85]
Length = 427
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 88/204 (43%), Gaps = 42/204 (20%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A DG ++ + + + +WSP K + Y S F+++++ + +
Sbjct: 184 VRVADYDGYNQFIVNRSSQPIMSPAWSPDGKRLAYVS----FENKKSQLVV--------- 230
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+++ + + G+N P+ SPDG L F S + G N++V+ G G
Sbjct: 231 ------QDLGSGSRKVVASFPGHNGAPAFSPDGSKLAFASSQDGLLNIYVM----GSNGG 280
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
QLT G +T PSWSP G I F+S+R V Y + +G G + G
Sbjct: 281 SPVQLTRGAGNNTEPSWSPDGSSILFTSDRSGSPQV-----YRMSANGGGASPV---GGR 332
Query: 535 GSGDVDRERINHVCFSADGEWLLF 558
GS + S DG+ L+
Sbjct: 333 GSAQI----------SGDGKTLVM 346
>gi|309786419|ref|ZP_07681045.1| tol-Pal system beta propeller repeat protein TolB [Shigella
dysenteriae 1617]
gi|308925813|gb|EFP71294.1| tol-Pal system beta propeller repeat protein TolB [Shigella
dysenteriae 1617]
Length = 405
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 220 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 275
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 276 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 321
Query: 557 LFTANLGA 564
+ ++ G
Sbjct: 322 VMVSSNGG 329
Score = 42.4 bits (98), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 180 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 235
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 236 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 281
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 282 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 309
>gi|206602338|gb|EDZ38819.1| Putative TolB protein [Leptospirillum sp. Group II '5-way CG']
Length = 447
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 80/176 (45%), Gaps = 41/176 (23%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
NN PS SPDG +VF S R GH +FV+D+ +G + +++ + + PSWSP+GD
Sbjct: 305 NNLSPSWSPDGSQIVFVSDRDGHPQIFVMDS-DGS---NEHRISFTGFYNVSPSWSPRGD 360
Query: 497 LIAF--SSNRHNPDNVEAFSLYVIKPDGS-GLRRIHVAGPEGSGDVDRERINHVCFSADG 553
IA+ + RH P + + P G L+ H +G + S D +S DG
Sbjct: 361 AIAYVCMNERHRP------KICLTTPTGDRSLQLTHGSGQDDSPD----------WSPDG 404
Query: 554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVK--LDGSGLRRLTWNGYENGTPAW 607
+LFT Q G Y+ K LDG+ + RL + TP W
Sbjct: 405 RTILFT----------------HQVKGHSYIEKMFLDGTHVHRLGSYPHSVITPVW 444
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 78/192 (40%), Gaps = 41/192 (21%)
Query: 276 LTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRL----- 330
L + PNF S NS + + ++++ E + +K R RL
Sbjct: 258 LNITPNF-------SRNSAMLAMALSKSQTSQNT------EIYSYDMKYHRFERLTYSHS 304
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN---SWSPTEKHV 387
N PS+SPDG IVF D + + I + SDGS + T FYN SWSP +
Sbjct: 305 NNLSPSWSPDGSQIVFVSDRDGHPQIFVMDSDGSNEHRI--SFTGFYNVSPSWSPRGDAI 362
Query: 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
Y + +ER +I + P+ D + + +G + P SPDG
Sbjct: 363 AY-----VCMNERHRPKICLTT----PTGDRSLQ---------LTHGSGQDDSPDWSPDG 404
Query: 448 KFLVFRSGRSGH 459
+ ++F GH
Sbjct: 405 RTILFTHQVKGH 416
>gi|187733089|ref|YP_001879397.1| translocation protein TolB [Shigella boydii CDC 3083-94]
gi|226705895|sp|B2TUC6.1|TOLB_SHIB3 RecName: Full=Protein TolB; Flags: Precursor
gi|187430081|gb|ACD09355.1| tol-Pal system beta propeller repeat protein TolB [Shigella boydii
CDC 3083-94]
Length = 430
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLGA 564
+ ++ G
Sbjct: 347 VMVSSNGG 354
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|194366891|ref|YP_002029501.1| translocation protein TolB [Stenotrophomonas maltophilia R551-3]
gi|194349695|gb|ACF52818.1| Tol-Pal system beta propeller repeat protein TolB [Stenotrophomonas
maltophilia R551-3]
Length = 439
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 29/178 (16%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A SDG T+++ + SWSP + Y S F+ + + I
Sbjct: 186 LMVADSDGFNPQTIVRSAEPLLSPSWSPDGSKLAYVS----FERGNSAIYI--------- 232
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ I + L G N+ P+ SPDG+ L RSG+ ++V+D + +
Sbjct: 233 ------QNIGTGARELVTSFRGINSAPAFSPDGRKLALTLSRSGNPEIYVMDLGSKQ--- 283
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
+ QLT+ IDT P+W+P G + F+S+R V Y + G R+ G
Sbjct: 284 -LAQLTNHFAIDTEPTWAPDGSAVYFTSDRGGRPQV-----YKVGAGGGSAERVTFQG 335
>gi|433046870|ref|ZP_20234285.1| protein tolB [Escherichia coli KTE120]
gi|431571343|gb|ELI44232.1| protein tolB [Escherichia coli KTE120]
Length = 430
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSNG 353
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|32474079|ref|NP_867073.1| TolB protein [Rhodopirellula baltica SH 1]
gi|32444616|emb|CAD74618.1| probable TolB protein [Rhodopirellula baltica SH 1]
Length = 1074
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 121/281 (43%), Gaps = 66/281 (23%)
Query: 382 PTEKHVIYTSTGPIFQSER---------ATVQIARVSFQLDPSDDNNREEI----PCDVK 428
P + V++ ST SER A+ + R S+ DP+ + E+ P K
Sbjct: 138 PNGEKVLFASTHADANSERLQKEELDFRASGESRRYSWDYDPNYELYAAELDQIEPGSTK 197
Query: 429 ILTK--EETGNNAFPSCSPDGKFLVFRSGRSGHKN--------------LFVLDAVNGEF 472
LT G +A S SPDGK +VF S R+ + F++D
Sbjct: 198 GLTALTSAMGYDAEGSYSPDGKQIVFASNRAAYSRELTEREREQFERDPAFMIDLYIMNA 257
Query: 473 NG-DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA 531
+G ++++LT+ P D P +SP G I + R P+ A ++ +K DGS ++R+
Sbjct: 258 DGSNVKRLTNEPGYDGGPFFSPDGQRICW--RRFAPNGATA-EIFTMKTDGSDVQRL--- 311
Query: 532 GPEGSGDVDRERINHVC----FSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKL 587
IN + + GE+L+FT N + F + +LY+V+
Sbjct: 312 ----------TEINAMSWAPFYHPSGEFLVFTTN-----------KHGFANF-ELYLVRA 349
Query: 588 DGSG--LRRLTWNGYENGTPAWHP-GNQLDLGKLRLEDDIG 625
DG G +R T G+ +G P + P GNQL R+ D G
Sbjct: 350 DGEGEPVRLTTTEGF-DGLPVFLPNGNQLSWTTTRVVDSDG 389
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 15/151 (9%)
Query: 379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS---DDNNREEIPCDVKILTKEET 435
S+SP K +++ S + R + R F+ DP+ D +VK LT E
Sbjct: 213 SYSPDGKQIVFASNRAAYS--RELTEREREQFERDPAFMIDLYIMNADGSNVKRLTNE-P 269
Query: 436 GNNAFPSCSPDGKFLVFR--SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
G + P SPDG+ + +R + +F + +G D+++LT+ + P + P
Sbjct: 270 GYDGGPFFSPDGQRICWRRFAPNGATAEIFTM-KTDGS---DVQRLTEINAMSWAPFYHP 325
Query: 494 KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG 524
G+ + F++N+H N F LY+++ DG G
Sbjct: 326 SGEFLVFTTNKHGFAN---FELYLVRADGEG 353
>gi|373488550|ref|ZP_09579214.1| TolB domain-containing protein [Holophaga foetida DSM 6591]
gi|372005495|gb|EHP06131.1| TolB domain-containing protein [Holophaga foetida DSM 6591]
Length = 430
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 33/182 (18%)
Query: 429 ILTKEETGNNAFPSCSPDGKFLVFRSG-RSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT 487
I K+ G P S DGK L F G R G+ ++ VLD +R+LT+ I+T
Sbjct: 236 IGEKQPQGPCFAPCWSTDGKRLAFAQGDRKGNSDIMVLDLATDR----VRRLTESDCINT 291
Query: 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV 547
P+W+P G+ +AF+S+R + ++++ DGS +RR+ G
Sbjct: 292 EPNWNPSGNQLAFTSDRDGGPQI-----FLMEEDGSNVRRLTREGN-------------- 332
Query: 548 CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
++ W + G M +++ ++F+ DL+V KL ++T + +P+W
Sbjct: 333 -YNTSPSW-----SPGGSM---IAYVSRFEGKFDLFVYKLGEGKAYQITTGVASSESPSW 383
Query: 608 HP 609
P
Sbjct: 384 SP 385
Score = 38.9 bits (89), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 421 EEIPCDVKILTKEETGN-NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL 479
EE +V+ LT+E GN N PS SP G + + S G +LFV GE G Q+
Sbjct: 318 EEDGSNVRRLTRE--GNYNTSPSWSPGGSMIAYVSRFEGKFDLFVYKL--GE--GKAYQI 371
Query: 480 TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
T G PSWSP + FSS L+ G+ L+R+
Sbjct: 372 TTGVASSESPSWSPDERRLVFSSGSRG-----GTQLFTTDLSGNQLKRL 415
>gi|419801201|ref|ZP_14326438.1| Tol-Pal system beta propeller repeat protein TolB [Haemophilus
parainfluenzae HK262]
gi|419845479|ref|ZP_14368749.1| Tol-Pal system beta propeller repeat protein TolB [Haemophilus
parainfluenzae HK2019]
gi|385193932|gb|EIF41278.1| Tol-Pal system beta propeller repeat protein TolB [Haemophilus
parainfluenzae HK262]
gi|386415592|gb|EIJ30118.1| Tol-Pal system beta propeller repeat protein TolB [Haemophilus
parainfluenzae HK2019]
Length = 427
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 24/160 (15%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A DG ++ + + + +WSP K + Y S F+++++ + +
Sbjct: 184 VRVADYDGYNQFIVNRSSQPIMSPAWSPDGKRLAYVS----FENKKSQLVV--------- 230
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+++ + + G+N P+ SPDG L F S + G N++V+ G G
Sbjct: 231 ------QDLGSGSRKVVASFPGHNGAPAFSPDGSKLAFASSQDGLLNIYVM----GSNGG 280
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFS 514
QLT G +T PSWSP G I F+S+R V S
Sbjct: 281 TPTQLTRGAGNNTEPSWSPDGSSILFTSDRSGSPQVYRMS 320
>gi|383459612|ref|YP_005373601.1| beta-propeller repeat-containing to-pal system protein TolB
[Corallococcus coralloides DSM 2259]
gi|380734509|gb|AFE10511.1| beta-propeller repeat-containing to-pal system protein TolB
[Corallococcus coralloides DSM 2259]
Length = 348
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 101/234 (43%), Gaps = 38/234 (16%)
Query: 306 TEGQSTIPHLEPVASPVKELRMLRLNGSF-PSFSPDGGLIVFNHDFELNAGIKIAKSDGS 364
+G S + + P A+ V G F P+ SPDG + + + + + ++DG+
Sbjct: 132 AQGFSDVVRVLPQANAVDTQLTHVQAGCFEPAVSPDGTEVACVCSGDGDPEVYVFRADGA 191
Query: 365 ---KRWTL--IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNN 419
+R T ++DRT WSP + +++ S + + V + R
Sbjct: 192 GEPRRITTFYMEDRTP---QWSPDGRWLLFVSN----RERKERVYLVRADG--------- 235
Query: 420 REEIPCDVKILTKEE-TGNNAFPSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIR 477
D++ L+ E G+ SPDGK + + + + G ++V D G
Sbjct: 236 -----ADLRALSGEGFAGDEREAVFSPDGKRVAYVARLADGKSRIWVADVAGGAPVA--- 287
Query: 478 QLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA 531
LTDG D MP+WSP G + F S R + LY+++PDG+G R+ A
Sbjct: 288 -LTDGQHRDDMPAWSPDGKALVFVSERDGDTD-----LYLMRPDGTGQTRLTTA 335
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 118/301 (39%), Gaps = 59/301 (19%)
Query: 338 SPDGGLIVFNHDFELNAGI----KIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTST 392
SPDG ++ E N + ++ +G ++ L R N SW+P ++ S
Sbjct: 72 SPDGRTLLVIASGEANGRVFQQLRLQPLEGGRQVALHPPRPRARNASWAPDGTWLVAESD 131
Query: 393 GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452
F + RV Q + D LT + G P+ SPDG +
Sbjct: 132 AQGFSD------VVRVLPQANAVDTQ-----------LTHVQAGCFE-PAVSPDGTEVAC 173
Query: 453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA 512
G ++V A + G+ R++T D P WSP G + F SNR + V
Sbjct: 174 VCSGDGDPEVYVFRA---DGAGEPRRITTFYMEDRTPQWSPDGRWLLFVSNRERKERV-- 228
Query: 513 FSLYVIKPDGSGLRRIHVAGPEGSG-----DVDRERINHVCFSADGEWLLFTANLGAVMA 567
Y+++ DG+ LR + G G D +R+ +V ADG+ ++ A++
Sbjct: 229 ---YLVRADGADLRALSGEGFAGDEREAVFSPDGKRVAYVARLADGKSRIWVADVAG--G 283
Query: 568 EPVSWPN--------QFQPYG-------------DLYVVKLDGSGLRRLTWNGYENGTPA 606
PV+ + + P G DLY+++ DG+G RLT + P
Sbjct: 284 APVALTDGQHRDDMPAWSPDGKALVFVSERDGDTDLYLMRPDGTGQTRLTTAKGADWLPR 343
Query: 607 W 607
W
Sbjct: 344 W 344
>gi|291281683|ref|YP_003498501.1| protein tolB precursor [Escherichia coli O55:H7 str. CB9615]
gi|290761556|gb|ADD55517.1| Protein tolB precursor [Escherichia coli O55:H7 str. CB9615]
Length = 431
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 246 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 302 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 347
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 348 VMVSSNG 354
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 262 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 307
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 308 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 335
>gi|15800456|ref|NP_286468.1| translocation protein TolB [Escherichia coli O157:H7 str. EDL933]
gi|15830029|ref|NP_308802.1| translocation protein TolB [Escherichia coli O157:H7 str. Sakai]
gi|16128715|ref|NP_415268.1| periplasmic protein [Escherichia coli str. K-12 substr. MG1655]
gi|30062097|ref|NP_836268.1| translocation protein TolB [Shigella flexneri 2a str. 2457T]
gi|74311264|ref|YP_309683.1| translocation protein TolB [Shigella sonnei Ss046]
gi|110640948|ref|YP_668676.1| translocation protein TolB [Escherichia coli 536]
gi|157154962|ref|YP_001461901.1| translocation protein TolB [Escherichia coli E24377A]
gi|168779235|ref|ZP_02804242.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
O157:H7 str. EC4076]
gi|168786906|ref|ZP_02811913.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
O157:H7 str. EC869]
gi|170020915|ref|YP_001725869.1| translocation protein TolB [Escherichia coli ATCC 8739]
gi|170080407|ref|YP_001729727.1| translocation protein TolB [Escherichia coli str. K-12 substr.
DH10B]
gi|188496422|ref|ZP_03003692.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
53638]
gi|189402960|ref|ZP_03006911.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
O157:H7 str. EC4486]
gi|208808867|ref|ZP_03251204.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
O157:H7 str. EC4206]
gi|208815738|ref|ZP_03256917.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
O157:H7 str. EC4045]
gi|209399861|ref|YP_002269374.1| translocation protein TolB [Escherichia coli O157:H7 str. EC4115]
gi|215485762|ref|YP_002328193.1| translocation protein TolB [Escherichia coli O127:H6 str. E2348/69]
gi|217324392|ref|ZP_03440476.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
O157:H7 str. TW14588]
gi|218557653|ref|YP_002390566.1| translocation protein TolB [Escherichia coli S88]
gi|218688531|ref|YP_002396743.1| translocation protein TolB [Escherichia coli ED1a]
gi|218694164|ref|YP_002401831.1| translocation protein TolB [Escherichia coli 55989]
gi|218699112|ref|YP_002406741.1| translocation protein TolB [Escherichia coli IAI39]
gi|218704067|ref|YP_002411586.1| translocation protein TolB [Escherichia coli UMN026]
gi|222155471|ref|YP_002555610.1| Protein tolB [Escherichia coli LF82]
gi|238900005|ref|YP_002925801.1| translocation protein TolB [Escherichia coli BW2952]
gi|251784229|ref|YP_002998533.1| tolB, subunit of The Tol-Pal Cell Envelope Complex, Colicin S4
Transport System and The Colicin A Import System
[Escherichia coli BL21(DE3)]
gi|253774289|ref|YP_003037120.1| translocation protein TolB [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254160810|ref|YP_003043918.1| translocation protein TolB [Escherichia coli B str. REL606]
gi|254287598|ref|YP_003053346.1| translocation protein TolB precursor [Escherichia coli BL21(DE3)]
gi|254791897|ref|YP_003076734.1| translocation protein TolB [Escherichia coli O157:H7 str. TW14359]
gi|260842946|ref|YP_003220724.1| periplasmic protein TolB [Escherichia coli O103:H2 str. 12009]
gi|260853975|ref|YP_003227866.1| translocation protein TolB [Escherichia coli O26:H11 str. 11368]
gi|260866871|ref|YP_003233273.1| periplasmic protein TolB [Escherichia coli O111:H- str. 11128]
gi|293403995|ref|ZP_06647989.1| tolB [Escherichia coli FVEC1412]
gi|293409124|ref|ZP_06652700.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
B354]
gi|293414025|ref|ZP_06656674.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
B185]
gi|293433008|ref|ZP_06661436.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
B088]
gi|297520453|ref|ZP_06938839.1| translocation protein TolB [Escherichia coli OP50]
gi|298379775|ref|ZP_06989380.1| tolB [Escherichia coli FVEC1302]
gi|306812853|ref|ZP_07447046.1| translocation protein TolB [Escherichia coli NC101]
gi|307314795|ref|ZP_07594389.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
W]
gi|312965176|ref|ZP_07779413.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
2362-75]
gi|312970819|ref|ZP_07784998.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
1827-70]
gi|331641241|ref|ZP_08342376.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
H736]
gi|331645891|ref|ZP_08346994.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
M605]
gi|331651748|ref|ZP_08352767.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
M718]
gi|331662100|ref|ZP_08363023.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TA143]
gi|331667107|ref|ZP_08367972.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TA271]
gi|331676422|ref|ZP_08377119.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
H591]
gi|331682170|ref|ZP_08382792.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
H299]
gi|378713896|ref|YP_005278789.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Escherichia coli KO11FL]
gi|383177313|ref|YP_005455318.1| translocation protein TolB [Shigella sonnei 53G]
gi|384542159|ref|YP_005726221.1| Protein tolB precursor [Shigella flexneri 2002017]
gi|386279754|ref|ZP_10057431.1| protein tolB [Escherichia sp. 4_1_40B]
gi|386596417|ref|YP_006092817.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Escherichia coli DH1]
gi|386598463|ref|YP_006099969.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Escherichia coli IHE3034]
gi|386605362|ref|YP_006111662.1| translocation protein TolB [Escherichia coli UM146]
gi|386608066|ref|YP_006123552.1| hypothetical protein ECW_m0795 [Escherichia coli W]
gi|386612908|ref|YP_006132574.1| translocation protein TolB [Escherichia coli UMNK88]
gi|386618193|ref|YP_006137773.1| Translocation protein [Escherichia coli NA114]
gi|386623132|ref|YP_006142860.1| hypothetical protein CE10_0744 [Escherichia coli O7:K1 str. CE10]
gi|386638099|ref|YP_006104897.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
ABU 83972]
gi|386702490|ref|YP_006166327.1| translocation protein TolB [Escherichia coli KO11FL]
gi|386703908|ref|YP_006167755.1| Protein tolB precursor [Escherichia coli P12b]
gi|386708508|ref|YP_006172229.1| translocation protein TolB [Escherichia coli W]
gi|387606227|ref|YP_006095083.1| colicin import protein [Escherichia coli 042]
gi|387611226|ref|YP_006114342.1| colicin import protein [Escherichia coli ETEC H10407]
gi|387616003|ref|YP_006119025.1| translocation protein TolB [Escherichia coli O83:H1 str. NRG 857C]
gi|387620474|ref|YP_006128101.1| tolB [Escherichia coli DH1]
gi|387828726|ref|YP_003348663.1| TolB protein [Escherichia coli SE15]
gi|387881310|ref|YP_006311612.1| translocation protein TolB [Escherichia coli Xuzhou21]
gi|388476832|ref|YP_489020.1| hypothetical protein Y75_p0720 [Escherichia coli str. K-12 substr.
W3110]
gi|404374069|ref|ZP_10979290.1| protein tolB [Escherichia sp. 1_1_43]
gi|407468156|ref|YP_006785402.1| translocation protein TolB [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407483112|ref|YP_006780261.1| translocation protein TolB [Escherichia coli O104:H4 str.
2011C-3493]
gi|410483665|ref|YP_006771211.1| translocation protein TolB [Escherichia coli O104:H4 str.
2009EL-2050]
gi|415779833|ref|ZP_11490404.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3431]
gi|415789790|ref|ZP_11494701.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EPECa14]
gi|415804958|ref|ZP_11501189.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
E128010]
gi|415818862|ref|ZP_11508478.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
OK1180]
gi|415827856|ref|ZP_11514625.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
OK1357]
gi|415836603|ref|ZP_11518954.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
RN587/1]
gi|415852703|ref|ZP_11529040.1| tol-Pal system beta propeller repeat protein TolB [Shigella sonnei
53G]
gi|415855567|ref|ZP_11530856.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 2a str. 2457T]
gi|416285548|ref|ZP_11647770.1| translocation protein TolB [Shigella boydii ATCC 9905]
gi|416312757|ref|ZP_11657778.1| translocation protein TolB [Escherichia coli O157:H7 str. 1044]
gi|416317100|ref|ZP_11660232.1| translocation protein TolB [Escherichia coli O157:H7 str. EC1212]
gi|416325330|ref|ZP_11665738.1| translocation protein TolB [Escherichia coli O157:H7 str. 1125]
gi|416346179|ref|ZP_11679450.1| translocation protein TolB [Escherichia coli EC4100B]
gi|416781501|ref|ZP_11877280.1| translocation protein TolB [Escherichia coli O157:H7 str. G5101]
gi|416792710|ref|ZP_11882176.1| translocation protein TolB [Escherichia coli O157:H- str. 493-89]
gi|416804043|ref|ZP_11887047.1| translocation protein TolB [Escherichia coli O157:H- str. H 2687]
gi|416815033|ref|ZP_11891743.1| translocation protein TolB [Escherichia coli O55:H7 str. 3256-97]
gi|416825048|ref|ZP_11896337.1| translocation protein TolB [Escherichia coli O55:H7 str. USDA 5905]
gi|416835879|ref|ZP_11901609.1| translocation protein TolB [Escherichia coli O157:H7 str. LSU-61]
gi|416896247|ref|ZP_11926111.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_7v]
gi|417083237|ref|ZP_11951332.1| An Essential Component Of The Tol- Dependent Translocation System
[Escherichia coli cloneA_i1]
gi|417118690|ref|ZP_11969208.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
1.2741]
gi|417152508|ref|ZP_11991299.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0497]
gi|417161581|ref|ZP_11997817.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0741]
gi|417176889|ref|ZP_12006685.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3.2608]
gi|417179647|ref|ZP_12007637.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
93.0624]
gi|417193468|ref|ZP_12015315.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
4.0522]
gi|417225197|ref|ZP_12028488.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.154]
gi|417230374|ref|ZP_12031960.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
5.0959]
gi|417253261|ref|ZP_12045020.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
4.0967]
gi|417274339|ref|ZP_12061679.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
2.4168]
gi|417284556|ref|ZP_12071851.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3003]
gi|417288902|ref|ZP_12076187.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW07793]
gi|417289940|ref|ZP_12077223.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
B41]
gi|417294405|ref|ZP_12081679.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
900105 (10e)]
gi|417580007|ref|ZP_12230825.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_B2F1]
gi|417585542|ref|ZP_12236319.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_C165-02]
gi|417590429|ref|ZP_12241146.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
2534-86]
gi|417601078|ref|ZP_12251660.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_94C]
gi|417606850|ref|ZP_12257374.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_DG131-3]
gi|417611779|ref|ZP_12262251.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_EH250]
gi|417617180|ref|ZP_12267610.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
G58-1]
gi|417622061|ref|ZP_12272387.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_H.1.8]
gi|417627671|ref|ZP_12277918.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_MHI813]
gi|417633345|ref|ZP_12283564.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_S1191]
gi|417638066|ref|ZP_12288234.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TX1999]
gi|417661273|ref|ZP_12310854.1| TolB protein precursor [Escherichia coli AA86]
gi|417665883|ref|ZP_12315445.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_O31]
gi|417688510|ref|ZP_12337753.1| tol-Pal system beta propeller repeat protein TolB [Shigella boydii
5216-82]
gi|417700640|ref|ZP_12349780.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-218]
gi|417706180|ref|ZP_12355243.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri VA-6]
gi|417711272|ref|ZP_12360278.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-272]
gi|417715721|ref|ZP_12364655.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-227]
gi|417721604|ref|ZP_12370449.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-304]
gi|417726981|ref|ZP_12375725.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-671]
gi|417732268|ref|ZP_12380938.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 2747-71]
gi|417737421|ref|ZP_12386027.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 4343-70]
gi|417742081|ref|ZP_12390632.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 2930-71]
gi|417754498|ref|ZP_12402593.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC2B]
gi|417804056|ref|ZP_12451089.1| translocation protein TolB [Escherichia coli O104:H4 str. LB226692]
gi|417831813|ref|ZP_12478334.1| translocation protein TolB [Escherichia coli O104:H4 str. 01-09591]
gi|417945033|ref|ZP_12588270.1| translocation protein TolB [Escherichia coli XH140A]
gi|417978267|ref|ZP_12619037.1| translocation protein TolB [Escherichia coli XH001]
gi|418253945|ref|ZP_12878864.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 6603-63]
gi|418262864|ref|ZP_12884148.1| tol-Pal system beta propeller repeat protein TolB [Shigella sonnei
str. Moseley]
gi|418301594|ref|ZP_12913388.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
UMNF18]
gi|418944241|ref|ZP_13497331.1| translocation protein TolB [Escherichia coli O157:H43 str. T22]
gi|419000889|ref|ZP_13548447.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC1B]
gi|419006413|ref|ZP_13553867.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC1C]
gi|419012264|ref|ZP_13559629.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC1D]
gi|419017173|ref|ZP_13564499.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC1E]
gi|419022861|ref|ZP_13570103.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC2A]
gi|419027674|ref|ZP_13574871.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC2C]
gi|419033362|ref|ZP_13580460.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC2D]
gi|419038451|ref|ZP_13585510.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC2E]
gi|419043903|ref|ZP_13590876.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC3A]
gi|419049350|ref|ZP_13596267.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC3B]
gi|419055412|ref|ZP_13602267.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC3C]
gi|419061009|ref|ZP_13607790.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC3D]
gi|419066977|ref|ZP_13613563.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC3E]
gi|419073850|ref|ZP_13619421.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC3F]
gi|419079097|ref|ZP_13624579.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC4A]
gi|419084723|ref|ZP_13630136.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC4B]
gi|419090815|ref|ZP_13636133.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC4C]
gi|419096344|ref|ZP_13641588.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC4D]
gi|419102484|ref|ZP_13647650.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC4E]
gi|419107834|ref|ZP_13652944.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC4F]
gi|419118108|ref|ZP_13663107.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC5A]
gi|419119240|ref|ZP_13664219.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC5B]
gi|419135218|ref|ZP_13680025.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC5E]
gi|419141262|ref|ZP_13686016.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC6A]
gi|419147965|ref|ZP_13692647.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC6B]
gi|419152621|ref|ZP_13697205.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC6C]
gi|419158068|ref|ZP_13702586.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC6D]
gi|419162981|ref|ZP_13707458.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC6E]
gi|419168732|ref|ZP_13713126.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC7A]
gi|419174159|ref|ZP_13718012.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC7B]
gi|419179713|ref|ZP_13723336.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC7C]
gi|419185272|ref|ZP_13728794.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC7D]
gi|419190724|ref|ZP_13734190.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC7E]
gi|419195850|ref|ZP_13739255.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC8A]
gi|419201825|ref|ZP_13745050.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC8B]
gi|419207837|ref|ZP_13750962.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC8C]
gi|419214348|ref|ZP_13757376.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC8D]
gi|419220007|ref|ZP_13762960.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC8E]
gi|419225457|ref|ZP_13768344.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC9A]
gi|419231283|ref|ZP_13774073.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC9B]
gi|419236626|ref|ZP_13779375.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC9C]
gi|419242201|ref|ZP_13784849.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC9D]
gi|419247651|ref|ZP_13790262.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC9E]
gi|419253411|ref|ZP_13795956.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC10A]
gi|419259463|ref|ZP_13801915.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC10B]
gi|419265484|ref|ZP_13807869.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC10C]
gi|419271138|ref|ZP_13813466.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC10D]
gi|419276958|ref|ZP_13819219.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC10E]
gi|419282658|ref|ZP_13824874.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC10F]
gi|419288201|ref|ZP_13830316.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC11A]
gi|419293539|ref|ZP_13835598.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC11B]
gi|419299023|ref|ZP_13841037.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC11C]
gi|419305285|ref|ZP_13847196.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC11D]
gi|419310342|ref|ZP_13852214.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC11E]
gi|419315620|ref|ZP_13857445.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC12A]
gi|419321467|ref|ZP_13863203.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC12B]
gi|419327684|ref|ZP_13869313.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC12C]
gi|419333119|ref|ZP_13874678.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC12D]
gi|419338519|ref|ZP_13880005.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC12E]
gi|419344368|ref|ZP_13885750.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC13A]
gi|419348806|ref|ZP_13890159.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC13B]
gi|419353721|ref|ZP_13895004.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC13C]
gi|419359050|ref|ZP_13900280.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC13D]
gi|419364018|ref|ZP_13905199.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC13E]
gi|419369007|ref|ZP_13910135.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC14A]
gi|419374408|ref|ZP_13915459.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC14B]
gi|419379684|ref|ZP_13920660.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC14C]
gi|419384893|ref|ZP_13925792.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC14D]
gi|419390139|ref|ZP_13930976.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC15A]
gi|419395311|ref|ZP_13936094.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC15B]
gi|419400664|ref|ZP_13941395.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC15C]
gi|419405838|ref|ZP_13946540.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC15D]
gi|419411330|ref|ZP_13952001.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC15E]
gi|419699604|ref|ZP_14227218.1| translocation protein TolB [Escherichia coli SCI-07]
gi|419813088|ref|ZP_14337945.1| translocation protein TolB [Escherichia coli O32:H37 str. P4]
gi|419866092|ref|ZP_14388463.1| translocation protein TolB [Escherichia coli O103:H25 str. CVM9340]
gi|419871178|ref|ZP_14393238.1| translocation protein TolB [Escherichia coli O103:H2 str. CVM9450]
gi|419878756|ref|ZP_14400216.1| translocation protein TolB [Escherichia coli O111:H11 str. CVM9534]
gi|419886172|ref|ZP_14406821.1| translocation protein TolB [Escherichia coli O111:H11 str. CVM9545]
gi|419889533|ref|ZP_14409918.1| translocation protein TolB [Escherichia coli O111:H8 str. CVM9570]
gi|419896166|ref|ZP_14415906.1| translocation protein TolB [Escherichia coli O111:H8 str. CVM9574]
gi|419905099|ref|ZP_14424073.1| translocation protein TolB [Escherichia coli O26:H11 str. CVM9942]
gi|419906853|ref|ZP_14425721.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Escherichia coli O26:H11 str. CVM10026]
gi|419917810|ref|ZP_14436034.1| translocation protein TolB [Escherichia coli KD2]
gi|419924495|ref|ZP_14442384.1| translocation protein TolB [Escherichia coli 541-15]
gi|419928834|ref|ZP_14446539.1| translocation protein TolB [Escherichia coli 541-1]
gi|419936393|ref|ZP_14453407.1| translocation protein TolB [Escherichia coli 576-1]
gi|419941098|ref|ZP_14457803.1| translocation protein TolB [Escherichia coli 75]
gi|419945297|ref|ZP_14461745.1| translocation protein TolB [Escherichia coli HM605]
gi|419952288|ref|ZP_14468459.1| translocation protein TolB [Escherichia coli CUMT8]
gi|420096370|ref|ZP_14607761.1| translocation protein TolB [Escherichia coli O111:H8 str. CVM9634]
gi|420101974|ref|ZP_14613021.1| translocation protein TolB [Escherichia coli O111:H11 str. CVM9455]
gi|420109359|ref|ZP_14619503.1| translocation protein TolB [Escherichia coli O111:H11 str. CVM9553]
gi|420116818|ref|ZP_14626194.1| translocation protein TolB [Escherichia coli O26:H11 str. CVM10021]
gi|420121986|ref|ZP_14631018.1| translocation protein TolB [Escherichia coli O26:H11 str. CVM10030]
gi|420126844|ref|ZP_14635546.1| translocation protein TolB [Escherichia coli O26:H11 str. CVM10224]
gi|420134507|ref|ZP_14642613.1| translocation protein TolB [Escherichia coli O26:H11 str. CVM9952]
gi|420270203|ref|ZP_14772562.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA22]
gi|420273800|ref|ZP_14776133.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA40]
gi|420279040|ref|ZP_14781306.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW06591]
gi|420285185|ref|ZP_14787402.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW10246]
gi|420290884|ref|ZP_14793048.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW11039]
gi|420297896|ref|ZP_14799963.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW09109]
gi|420302662|ref|ZP_14804691.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW10119]
gi|420308164|ref|ZP_14810136.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1738]
gi|420313673|ref|ZP_14815579.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1734]
gi|420329844|ref|ZP_14831548.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-1770]
gi|420340216|ref|ZP_14841741.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-404]
gi|420357254|ref|ZP_14858269.1| tol-Pal system beta propeller repeat protein TolB [Shigella sonnei
3226-85]
gi|420362185|ref|ZP_14863108.1| tol-Pal system beta propeller repeat protein TolB [Shigella sonnei
4822-66]
gi|420384368|ref|ZP_14883754.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EPECa12]
gi|420390150|ref|ZP_14889418.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EPEC C342-62]
gi|421810982|ref|ZP_16246784.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
8.0416]
gi|421817059|ref|ZP_16252617.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
10.0821]
gi|421822452|ref|ZP_16257889.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK920]
gi|421829186|ref|ZP_16264514.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA7]
gi|422331010|ref|ZP_16412027.1| protein tolB [Escherichia coli 4_1_47FAA]
gi|422748248|ref|ZP_16802161.1| tol-Pal system beta propeller TolB [Escherichia coli H252]
gi|422753352|ref|ZP_16807179.1| tol-Pal system beta propeller TolB [Escherichia coli H263]
gi|422763880|ref|ZP_16817633.1| tol-Pal system beta propeller TolB [Escherichia coli E1167]
gi|422769937|ref|ZP_16823628.1| tol-Pal system beta propeller TolB [Escherichia coli E482]
gi|422782475|ref|ZP_16835260.1| tol-Pal system beta propeller TolB [Escherichia coli TW10509]
gi|422800098|ref|ZP_16848596.1| tol-Pal system beta propeller TolB [Escherichia coli M863]
gi|422816715|ref|ZP_16864930.1| protein tolB [Escherichia coli M919]
gi|422827949|ref|ZP_16876122.1| tolB [Escherichia coli B093]
gi|422839210|ref|ZP_16887182.1| tolB [Escherichia coli H397]
gi|422959127|ref|ZP_16971058.1| protein tolB [Escherichia coli H494]
gi|422991419|ref|ZP_16982190.1| protein tolB [Escherichia coli O104:H4 str. C227-11]
gi|422993361|ref|ZP_16984125.1| protein tolB [Escherichia coli O104:H4 str. C236-11]
gi|422998573|ref|ZP_16989329.1| protein tolB [Escherichia coli O104:H4 str. 09-7901]
gi|423007034|ref|ZP_16997777.1| protein tolB [Escherichia coli O104:H4 str. 04-8351]
gi|423008679|ref|ZP_16999417.1| protein tolB [Escherichia coli O104:H4 str. 11-3677]
gi|423022867|ref|ZP_17013570.1| protein tolB [Escherichia coli O104:H4 str. 11-4404]
gi|423028019|ref|ZP_17018712.1| protein tolB [Escherichia coli O104:H4 str. 11-4522]
gi|423033852|ref|ZP_17024536.1| protein tolB [Escherichia coli O104:H4 str. 11-4623]
gi|423036719|ref|ZP_17027393.1| protein tolB [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423041838|ref|ZP_17032505.1| protein tolB [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423048527|ref|ZP_17039184.1| protein tolB [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423052110|ref|ZP_17040918.1| protein tolB [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423059076|ref|ZP_17047872.1| protein tolB [Escherichia coli O104:H4 str. 11-4632 C5]
gi|423659402|ref|ZP_17634639.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA31]
gi|423701487|ref|ZP_17675946.1| protein tolB [Escherichia coli H730]
gi|423708666|ref|ZP_17683044.1| protein tolB [Escherichia coli B799]
gi|424075619|ref|ZP_17812971.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FDA505]
gi|424081949|ref|ZP_17818814.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FDA517]
gi|424088574|ref|ZP_17824837.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK1996]
gi|424094794|ref|ZP_17830551.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK1985]
gi|424101200|ref|ZP_17836364.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK1990]
gi|424108004|ref|ZP_17842588.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
93-001]
gi|424113992|ref|ZP_17848150.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA3]
gi|424120052|ref|ZP_17853770.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA5]
gi|424126303|ref|ZP_17859512.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA9]
gi|424132404|ref|ZP_17865211.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA10]
gi|424138946|ref|ZP_17871247.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA14]
gi|424145385|ref|ZP_17877163.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA15]
gi|424151524|ref|ZP_17882784.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA24]
gi|424185307|ref|ZP_17888223.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA25]
gi|424269051|ref|ZP_17894127.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA28]
gi|424424043|ref|ZP_17899856.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA32]
gi|424453932|ref|ZP_17905475.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA33]
gi|424460247|ref|ZP_17911179.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA39]
gi|424466714|ref|ZP_17916909.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA41]
gi|424473270|ref|ZP_17922953.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA42]
gi|424479216|ref|ZP_17928468.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW07945]
gi|424485283|ref|ZP_17934153.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW09098]
gi|424491447|ref|ZP_17939814.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW09195]
gi|424498494|ref|ZP_17945776.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4203]
gi|424504722|ref|ZP_17951507.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4196]
gi|424510992|ref|ZP_17957222.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW14313]
gi|424518554|ref|ZP_17962984.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW14301]
gi|424524381|ref|ZP_17968411.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4421]
gi|424530580|ref|ZP_17974216.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4422]
gi|424536554|ref|ZP_17979826.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4013]
gi|424542472|ref|ZP_17985293.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4402]
gi|424548791|ref|ZP_17991003.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4439]
gi|424555053|ref|ZP_17996778.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4436]
gi|424561399|ref|ZP_18002694.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4437]
gi|424567431|ref|ZP_18008353.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4448]
gi|424573616|ref|ZP_18014047.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1845]
gi|424579565|ref|ZP_18019506.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1863]
gi|424748533|ref|ZP_18176676.1| translocation protein TolB [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424761791|ref|ZP_18189328.1| translocation protein TolB [Escherichia coli O111:H11 str.
CFSAN001630]
gi|424771475|ref|ZP_18198618.1| translocation protein TolB [Escherichia coli O111:H8 str.
CFSAN001632]
gi|425096244|ref|ZP_18499275.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3.4870]
gi|425102389|ref|ZP_18505041.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
5.2239]
gi|425108180|ref|ZP_18510438.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
6.0172]
gi|425120627|ref|ZP_18522323.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
8.0569]
gi|425124011|ref|ZP_18525596.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
8.0586]
gi|425130051|ref|ZP_18531157.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
8.2524]
gi|425136389|ref|ZP_18537120.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
10.0833]
gi|425142288|ref|ZP_18542582.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
10.0869]
gi|425148600|ref|ZP_18548502.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
88.0221]
gi|425154218|ref|ZP_18553773.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA34]
gi|425160670|ref|ZP_18559850.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FDA506]
gi|425166186|ref|ZP_18565002.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FDA507]
gi|425172472|ref|ZP_18570876.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FDA504]
gi|425178360|ref|ZP_18576420.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK1999]
gi|425184502|ref|ZP_18582134.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK1997]
gi|425191260|ref|ZP_18588394.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
NE1487]
gi|425197586|ref|ZP_18594240.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
NE037]
gi|425204245|ref|ZP_18600379.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK2001]
gi|425216044|ref|ZP_18611369.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA23]
gi|425222619|ref|ZP_18617483.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA49]
gi|425228858|ref|ZP_18623260.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA45]
gi|425241160|ref|ZP_18634800.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MA6]
gi|425247281|ref|ZP_18640494.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
5905]
gi|425253011|ref|ZP_18645892.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
CB7326]
gi|425259327|ref|ZP_18651695.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC96038]
gi|425265427|ref|ZP_18657353.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
5412]
gi|425276572|ref|ZP_18667911.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
ARS4.2123]
gi|425287324|ref|ZP_18678248.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3006]
gi|425292885|ref|ZP_18683466.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA38]
gi|425298920|ref|ZP_18688969.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
07798]
gi|425304228|ref|ZP_18694012.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
N1]
gi|425309612|ref|ZP_18699081.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1735]
gi|425315535|ref|ZP_18704613.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1736]
gi|425321599|ref|ZP_18710272.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1737]
gi|425327790|ref|ZP_18716013.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1846]
gi|425333974|ref|ZP_18721696.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1847]
gi|425340385|ref|ZP_18727631.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1848]
gi|425346260|ref|ZP_18733064.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1849]
gi|425352485|ref|ZP_18738869.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1850]
gi|425358478|ref|ZP_18744454.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1856]
gi|425364586|ref|ZP_18750134.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1862]
gi|425371033|ref|ZP_18755999.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1864]
gi|425377613|ref|ZP_18761992.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1865]
gi|425383818|ref|ZP_18767701.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1866]
gi|425390516|ref|ZP_18773978.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1868]
gi|425396637|ref|ZP_18779686.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1869]
gi|425402627|ref|ZP_18785234.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1870]
gi|425409168|ref|ZP_18791324.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
NE098]
gi|425415449|ref|ZP_18797089.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK523]
gi|425421389|ref|ZP_18802597.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
0.1288]
gi|425426587|ref|ZP_18807639.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
0.1304]
gi|427803805|ref|ZP_18970872.1| periplasmic protein [Escherichia coli chi7122]
gi|427808395|ref|ZP_18975460.1| periplasmic protein involved in the tonb-independent uptake of
group A colicins [Escherichia coli]
gi|428945268|ref|ZP_19017905.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
88.1467]
gi|428957272|ref|ZP_19028958.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
89.0511]
gi|428963584|ref|ZP_19034770.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
90.0091]
gi|428969750|ref|ZP_19040380.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
90.0039]
gi|428976175|ref|ZP_19046344.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
90.2281]
gi|428981946|ref|ZP_19051677.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
93.0055]
gi|428988199|ref|ZP_19057488.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
93.0056]
gi|428994013|ref|ZP_19062919.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
94.0618]
gi|429000126|ref|ZP_19068629.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
95.0183]
gi|429008754|ref|ZP_19076299.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
95.1288]
gi|429012691|ref|ZP_19079943.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
95.0943]
gi|429018871|ref|ZP_19085650.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0428]
gi|429024588|ref|ZP_19090994.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0427]
gi|429030907|ref|ZP_19096781.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0939]
gi|429043022|ref|ZP_19108022.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0107]
gi|429048793|ref|ZP_19113449.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
97.0003]
gi|429054169|ref|ZP_19118655.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
97.1742]
gi|429059845|ref|ZP_19123984.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
97.0007]
gi|429065316|ref|ZP_19129172.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0672]
gi|429071876|ref|ZP_19135227.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0678]
gi|429077192|ref|ZP_19140405.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0713]
gi|429722909|ref|ZP_19257800.1| protein tolB [Escherichia coli O104:H4 str. Ec11-9450]
gi|429775081|ref|ZP_19307081.1| protein tolB [Escherichia coli O104:H4 str. 11-02030]
gi|429780267|ref|ZP_19312219.1| protein tolB [Escherichia coli O104:H4 str. 11-02033-1]
gi|429784318|ref|ZP_19316230.1| protein tolB [Escherichia coli O104:H4 str. 11-02092]
gi|429789655|ref|ZP_19321530.1| protein tolB [Escherichia coli O104:H4 str. 11-02093]
gi|429795885|ref|ZP_19327711.1| protein tolB [Escherichia coli O104:H4 str. 11-02281]
gi|429801813|ref|ZP_19333590.1| protein tolB [Escherichia coli O104:H4 str. 11-02318]
gi|429805445|ref|ZP_19337191.1| protein tolB [Escherichia coli O104:H4 str. 11-02913]
gi|429810254|ref|ZP_19341956.1| protein tolB [Escherichia coli O104:H4 str. 11-03439]
gi|429816014|ref|ZP_19347673.1| protein tolB [Escherichia coli O104:H4 str. 11-04080]
gi|429821602|ref|ZP_19353215.1| protein tolB [Escherichia coli O104:H4 str. 11-03943]
gi|429824388|ref|ZP_19355879.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0109]
gi|429830746|ref|ZP_19361590.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
97.0010]
gi|429907273|ref|ZP_19373241.1| protein tolB [Escherichia coli O104:H4 str. Ec11-9990]
gi|429911468|ref|ZP_19377424.1| protein tolB [Escherichia coli O104:H4 str. Ec11-9941]
gi|429917309|ref|ZP_19383249.1| protein tolB [Escherichia coli O104:H4 str. Ec11-4984]
gi|429922347|ref|ZP_19388268.1| protein tolB [Escherichia coli O104:H4 str. Ec11-5604]
gi|429923200|ref|ZP_19389116.1| protein tolB [Escherichia coli O104:H4 str. Ec11-4986]
gi|429932095|ref|ZP_19397989.1| protein tolB [Escherichia coli O104:H4 str. Ec11-4987]
gi|429933696|ref|ZP_19399586.1| protein tolB [Escherichia coli O104:H4 str. Ec11-4988]
gi|429939355|ref|ZP_19405229.1| protein tolB [Escherichia coli O104:H4 str. Ec11-5603]
gi|429946997|ref|ZP_19412852.1| protein tolB [Escherichia coli O104:H4 str. Ec11-6006]
gi|429949627|ref|ZP_19415475.1| protein tolB [Escherichia coli O104:H4 str. Ec12-0465]
gi|429957907|ref|ZP_19423736.1| protein tolB [Escherichia coli O104:H4 str. Ec12-0466]
gi|432352647|ref|ZP_19595932.1| protein tolB [Escherichia coli KTE2]
gi|432357031|ref|ZP_19600278.1| protein tolB [Escherichia coli KTE4]
gi|432361503|ref|ZP_19604688.1| protein tolB [Escherichia coli KTE5]
gi|432368688|ref|ZP_19611790.1| protein tolB [Escherichia coli KTE10]
gi|432375852|ref|ZP_19618861.1| protein tolB [Escherichia coli KTE12]
gi|432380370|ref|ZP_19623326.1| protein tolB [Escherichia coli KTE15]
gi|432386140|ref|ZP_19629037.1| protein tolB [Escherichia coli KTE16]
gi|432390730|ref|ZP_19633589.1| protein tolB [Escherichia coli KTE21]
gi|432396627|ref|ZP_19639413.1| protein tolB [Escherichia coli KTE25]
gi|432400884|ref|ZP_19643639.1| protein tolB [Escherichia coli KTE26]
gi|432405561|ref|ZP_19648283.1| protein tolB [Escherichia coli KTE28]
gi|432410748|ref|ZP_19653429.1| protein tolB [Escherichia coli KTE39]
gi|432415667|ref|ZP_19658293.1| protein tolB [Escherichia coli KTE44]
gi|432420822|ref|ZP_19663378.1| protein tolB [Escherichia coli KTE178]
gi|432424937|ref|ZP_19667454.1| protein tolB [Escherichia coli KTE181]
gi|432430795|ref|ZP_19673239.1| protein tolB [Escherichia coli KTE187]
gi|432435323|ref|ZP_19677723.1| protein tolB [Escherichia coli KTE188]
gi|432440066|ref|ZP_19682420.1| protein tolB [Escherichia coli KTE189]
gi|432445179|ref|ZP_19687486.1| protein tolB [Escherichia coli KTE191]
gi|432453500|ref|ZP_19695738.1| protein tolB [Escherichia coli KTE193]
gi|432455609|ref|ZP_19697809.1| protein tolB [Escherichia coli KTE201]
gi|432459760|ref|ZP_19701918.1| protein tolB [Escherichia coli KTE204]
gi|432464707|ref|ZP_19706814.1| protein tolB [Escherichia coli KTE205]
gi|432470115|ref|ZP_19712168.1| protein tolB [Escherichia coli KTE206]
gi|432474797|ref|ZP_19716806.1| protein tolB [Escherichia coli KTE208]
gi|432480120|ref|ZP_19722083.1| protein tolB [Escherichia coli KTE210]
gi|432484439|ref|ZP_19726360.1| protein tolB [Escherichia coli KTE212]
gi|432488280|ref|ZP_19730167.1| protein tolB [Escherichia coli KTE213]
gi|432494548|ref|ZP_19736365.1| protein tolB [Escherichia coli KTE214]
gi|432498958|ref|ZP_19740735.1| protein tolB [Escherichia coli KTE216]
gi|432503387|ref|ZP_19745123.1| protein tolB [Escherichia coli KTE220]
gi|432512940|ref|ZP_19750176.1| protein tolB [Escherichia coli KTE224]
gi|432521434|ref|ZP_19758591.1| protein tolB [Escherichia coli KTE228]
gi|432522832|ref|ZP_19759970.1| protein tolB [Escherichia coli KTE230]
gi|432530072|ref|ZP_19767113.1| protein tolB [Escherichia coli KTE233]
gi|432532893|ref|ZP_19769888.1| protein tolB [Escherichia coli KTE234]
gi|432536746|ref|ZP_19773665.1| protein tolB [Escherichia coli KTE235]
gi|432542085|ref|ZP_19778943.1| protein tolB [Escherichia coli KTE236]
gi|432547429|ref|ZP_19784223.1| protein tolB [Escherichia coli KTE237]
gi|432552695|ref|ZP_19789426.1| protein tolB [Escherichia coli KTE47]
gi|432557728|ref|ZP_19794418.1| protein tolB [Escherichia coli KTE49]
gi|432562614|ref|ZP_19799238.1| protein tolB [Escherichia coli KTE51]
gi|432567518|ref|ZP_19804044.1| protein tolB [Escherichia coli KTE53]
gi|432572680|ref|ZP_19809171.1| protein tolB [Escherichia coli KTE55]
gi|432579395|ref|ZP_19815827.1| protein tolB [Escherichia coli KTE56]
gi|432582804|ref|ZP_19819214.1| protein tolB [Escherichia coli KTE57]
gi|432586985|ref|ZP_19823356.1| protein tolB [Escherichia coli KTE58]
gi|432591797|ref|ZP_19828125.1| protein tolB [Escherichia coli KTE60]
gi|432596628|ref|ZP_19832910.1| protein tolB [Escherichia coli KTE62]
gi|432601281|ref|ZP_19837531.1| protein tolB [Escherichia coli KTE66]
gi|432606564|ref|ZP_19842758.1| protein tolB [Escherichia coli KTE67]
gi|432610416|ref|ZP_19846588.1| protein tolB [Escherichia coli KTE72]
gi|432615574|ref|ZP_19851702.1| protein tolB [Escherichia coli KTE75]
gi|432620815|ref|ZP_19856858.1| protein tolB [Escherichia coli KTE76]
gi|432626286|ref|ZP_19862268.1| protein tolB [Escherichia coli KTE77]
gi|432630362|ref|ZP_19866307.1| protein tolB [Escherichia coli KTE80]
gi|432639905|ref|ZP_19875746.1| protein tolB [Escherichia coli KTE83]
gi|432650207|ref|ZP_19885968.1| protein tolB [Escherichia coli KTE87]
gi|432654972|ref|ZP_19890685.1| protein tolB [Escherichia coli KTE93]
gi|432659973|ref|ZP_19895624.1| protein tolB [Escherichia coli KTE111]
gi|432664973|ref|ZP_19900560.1| protein tolB [Escherichia coli KTE116]
gi|432669649|ref|ZP_19905191.1| protein tolB [Escherichia coli KTE119]
gi|432673704|ref|ZP_19909199.1| protein tolB [Escherichia coli KTE142]
gi|432679164|ref|ZP_19914564.1| protein tolB [Escherichia coli KTE143]
gi|432684550|ref|ZP_19919863.1| protein tolB [Escherichia coli KTE156]
gi|432690638|ref|ZP_19925878.1| protein tolB [Escherichia coli KTE161]
gi|432693498|ref|ZP_19928710.1| protein tolB [Escherichia coli KTE162]
gi|432698052|ref|ZP_19933219.1| protein tolB [Escherichia coli KTE169]
gi|432703279|ref|ZP_19938401.1| protein tolB [Escherichia coli KTE171]
gi|432709544|ref|ZP_19944611.1| protein tolB [Escherichia coli KTE6]
gi|432712405|ref|ZP_19947455.1| protein tolB [Escherichia coli KTE8]
gi|432717783|ref|ZP_19952781.1| protein tolB [Escherichia coli KTE9]
gi|432722257|ref|ZP_19957181.1| protein tolB [Escherichia coli KTE17]
gi|432726799|ref|ZP_19961681.1| protein tolB [Escherichia coli KTE18]
gi|432731410|ref|ZP_19966247.1| protein tolB [Escherichia coli KTE45]
gi|432736247|ref|ZP_19971018.1| protein tolB [Escherichia coli KTE42]
gi|432740485|ref|ZP_19975207.1| protein tolB [Escherichia coli KTE23]
gi|432744673|ref|ZP_19979372.1| protein tolB [Escherichia coli KTE43]
gi|432749177|ref|ZP_19983792.1| protein tolB [Escherichia coli KTE29]
gi|432753484|ref|ZP_19988051.1| protein tolB [Escherichia coli KTE22]
gi|432758489|ref|ZP_19992991.1| protein tolB [Escherichia coli KTE46]
gi|432764065|ref|ZP_19998514.1| protein tolB [Escherichia coli KTE48]
gi|432769590|ref|ZP_20003944.1| protein tolB [Escherichia coli KTE50]
gi|432773918|ref|ZP_20008205.1| protein tolB [Escherichia coli KTE54]
gi|432777623|ref|ZP_20011874.1| protein tolB [Escherichia coli KTE59]
gi|432782586|ref|ZP_20016771.1| protein tolB [Escherichia coli KTE63]
gi|432786412|ref|ZP_20020578.1| protein tolB [Escherichia coli KTE65]
gi|432791959|ref|ZP_20026050.1| protein tolB [Escherichia coli KTE78]
gi|432797922|ref|ZP_20031948.1| protein tolB [Escherichia coli KTE79]
gi|432800968|ref|ZP_20034955.1| protein tolB [Escherichia coli KTE84]
gi|432804820|ref|ZP_20038762.1| protein tolB [Escherichia coli KTE91]
gi|432812845|ref|ZP_20046691.1| protein tolB [Escherichia coli KTE101]
gi|432814277|ref|ZP_20048068.1| protein tolB [Escherichia coli KTE115]
gi|432820004|ref|ZP_20053718.1| protein tolB [Escherichia coli KTE118]
gi|432826219|ref|ZP_20059875.1| protein tolB [Escherichia coli KTE123]
gi|432830717|ref|ZP_20064301.1| protein tolB [Escherichia coli KTE135]
gi|432833763|ref|ZP_20067306.1| protein tolB [Escherichia coli KTE136]
gi|432838297|ref|ZP_20071787.1| protein tolB [Escherichia coli KTE140]
gi|432842992|ref|ZP_20076386.1| protein tolB [Escherichia coli KTE141]
gi|432849051|ref|ZP_20080421.1| protein tolB [Escherichia coli KTE144]
gi|432859797|ref|ZP_20085549.1| protein tolB [Escherichia coli KTE146]
gi|432880326|ref|ZP_20097017.1| protein tolB [Escherichia coli KTE154]
gi|432885013|ref|ZP_20099693.1| protein tolB [Escherichia coli KTE158]
gi|432893474|ref|ZP_20105486.1| protein tolB [Escherichia coli KTE165]
gi|432897569|ref|ZP_20108465.1| protein tolB [Escherichia coli KTE192]
gi|432903169|ref|ZP_20112694.1| protein tolB [Escherichia coli KTE194]
gi|432911017|ref|ZP_20117581.1| protein tolB [Escherichia coli KTE190]
gi|432917906|ref|ZP_20122374.1| protein tolB [Escherichia coli KTE173]
gi|432925196|ref|ZP_20127287.1| protein tolB [Escherichia coli KTE175]
gi|432933207|ref|ZP_20132928.1| protein tolB [Escherichia coli KTE184]
gi|432945893|ref|ZP_20141675.1| protein tolB [Escherichia coli KTE196]
gi|432953956|ref|ZP_20146132.1| protein tolB [Escherichia coli KTE197]
gi|432960232|ref|ZP_20150438.1| protein tolB [Escherichia coli KTE202]
gi|432966842|ref|ZP_20155759.1| protein tolB [Escherichia coli KTE203]
gi|432970858|ref|ZP_20159736.1| protein tolB [Escherichia coli KTE207]
gi|432977404|ref|ZP_20166228.1| protein tolB [Escherichia coli KTE209]
gi|432980219|ref|ZP_20168998.1| protein tolB [Escherichia coli KTE211]
gi|432984374|ref|ZP_20173112.1| protein tolB [Escherichia coli KTE215]
gi|432989798|ref|ZP_20178465.1| protein tolB [Escherichia coli KTE217]
gi|432994475|ref|ZP_20183090.1| protein tolB [Escherichia coli KTE218]
gi|432998893|ref|ZP_20187432.1| protein tolB [Escherichia coli KTE223]
gi|433004212|ref|ZP_20192650.1| protein tolB [Escherichia coli KTE227]
gi|433011421|ref|ZP_20199826.1| protein tolB [Escherichia coli KTE229]
gi|433012919|ref|ZP_20201296.1| protein tolB [Escherichia coli KTE104]
gi|433017716|ref|ZP_20205978.1| protein tolB [Escherichia coli KTE105]
gi|433022544|ref|ZP_20210558.1| protein tolB [Escherichia coli KTE106]
gi|433027727|ref|ZP_20215601.1| protein tolB [Escherichia coli KTE109]
gi|433032240|ref|ZP_20220015.1| protein tolB [Escherichia coli KTE112]
gi|433037679|ref|ZP_20225294.1| protein tolB [Escherichia coli KTE113]
gi|433042247|ref|ZP_20229772.1| protein tolB [Escherichia coli KTE117]
gi|433052054|ref|ZP_20239284.1| protein tolB [Escherichia coli KTE122]
gi|433057039|ref|ZP_20244122.1| protein tolB [Escherichia coli KTE124]
gi|433061985|ref|ZP_20248943.1| protein tolB [Escherichia coli KTE125]
gi|433066990|ref|ZP_20253818.1| protein tolB [Escherichia coli KTE128]
gi|433071793|ref|ZP_20258489.1| protein tolB [Escherichia coli KTE129]
gi|433076906|ref|ZP_20263469.1| protein tolB [Escherichia coli KTE131]
gi|433081628|ref|ZP_20268102.1| protein tolB [Escherichia coli KTE133]
gi|433086352|ref|ZP_20272749.1| protein tolB [Escherichia coli KTE137]
gi|433091071|ref|ZP_20277368.1| protein tolB [Escherichia coli KTE138]
gi|433095642|ref|ZP_20281853.1| protein tolB [Escherichia coli KTE139]
gi|433100255|ref|ZP_20286364.1| protein tolB [Escherichia coli KTE145]
gi|433104851|ref|ZP_20290870.1| protein tolB [Escherichia coli KTE148]
gi|433110020|ref|ZP_20295895.1| protein tolB [Escherichia coli KTE150]
gi|433114630|ref|ZP_20300445.1| protein tolB [Escherichia coli KTE153]
gi|433119295|ref|ZP_20305003.1| protein tolB [Escherichia coli KTE157]
gi|433124289|ref|ZP_20309877.1| protein tolB [Escherichia coli KTE160]
gi|433129096|ref|ZP_20314566.1| protein tolB [Escherichia coli KTE163]
gi|433133910|ref|ZP_20319285.1| protein tolB [Escherichia coli KTE166]
gi|433138349|ref|ZP_20323634.1| protein tolB [Escherichia coli KTE167]
gi|433143322|ref|ZP_20328489.1| protein tolB [Escherichia coli KTE168]
gi|433148136|ref|ZP_20333201.1| protein tolB [Escherichia coli KTE174]
gi|433152836|ref|ZP_20337803.1| protein tolB [Escherichia coli KTE176]
gi|433157713|ref|ZP_20342582.1| protein tolB [Escherichia coli KTE177]
gi|433162537|ref|ZP_20347296.1| protein tolB [Escherichia coli KTE179]
gi|433167546|ref|ZP_20352214.1| protein tolB [Escherichia coli KTE180]
gi|433172574|ref|ZP_20357129.1| protein tolB [Escherichia coli KTE232]
gi|433177223|ref|ZP_20361675.1| protein tolB [Escherichia coli KTE82]
gi|433182281|ref|ZP_20366578.1| protein tolB [Escherichia coli KTE85]
gi|433192685|ref|ZP_20376700.1| protein tolB [Escherichia coli KTE90]
gi|433197304|ref|ZP_20381228.1| protein tolB [Escherichia coli KTE94]
gi|433202231|ref|ZP_20386032.1| protein tolB [Escherichia coli KTE95]
gi|433206863|ref|ZP_20390560.1| protein tolB [Escherichia coli KTE97]
gi|433211613|ref|ZP_20395226.1| protein tolB [Escherichia coli KTE99]
gi|433323423|ref|ZP_20400772.1| translocation protein TolB [Escherichia coli J96]
gi|442606295|ref|ZP_21021095.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Escherichia
coli Nissle 1917]
gi|443616765|ref|YP_007380621.1| translocation protein TolB [Escherichia coli APEC O78]
gi|444923090|ref|ZP_21242795.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
09BKT078844]
gi|444929422|ref|ZP_21248568.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0814]
gi|444937121|ref|ZP_21255903.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0815]
gi|444940317|ref|ZP_21258958.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0816]
gi|444945937|ref|ZP_21264351.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0839]
gi|444951461|ref|ZP_21269680.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0848]
gi|444956915|ref|ZP_21274908.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.1753]
gi|444962222|ref|ZP_21279968.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.1775]
gi|444973450|ref|ZP_21290725.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.1805]
gi|444978994|ref|ZP_21295984.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
ATCC 700728]
gi|444984286|ref|ZP_21301151.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA11]
gi|444989529|ref|ZP_21306265.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA19]
gi|444994880|ref|ZP_21311472.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA13]
gi|445000382|ref|ZP_21316840.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA2]
gi|445005842|ref|ZP_21322177.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA47]
gi|445013215|ref|ZP_21329327.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA48]
gi|445016783|ref|ZP_21332828.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA8]
gi|445027483|ref|ZP_21343256.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.1781]
gi|445032977|ref|ZP_21348596.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.1762]
gi|445038670|ref|ZP_21354136.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA35]
gi|445043971|ref|ZP_21359304.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3.4880]
gi|445049457|ref|ZP_21364619.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
95.0083]
gi|445055112|ref|ZP_21370058.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0670]
gi|450186382|ref|ZP_21889467.1| translocation protein TolB [Escherichia coli SEPT362]
gi|450212099|ref|ZP_21894472.1| translocation protein TolB [Escherichia coli O08]
gi|450261185|ref|ZP_21903133.1| translocation protein TolB [Escherichia coli S17]
gi|452969627|ref|ZP_21967854.1| translocation protein TolB [Escherichia coli O157:H7 str. EC4009]
gi|67473560|sp|P0A855.1|TOLB_ECOLI RecName: Full=Protein TolB; Flags: Precursor
gi|67473563|sp|P0A856.1|TOLB_ECOL6 RecName: Full=Protein TolB; Flags: Precursor
gi|67473564|sp|P0A857.1|TOLB_ECO57 RecName: Full=Protein TolB; Flags: Precursor
gi|118574579|sp|Q0TJV4.1|TOLB_ECOL5 RecName: Full=Protein TolB; Flags: Precursor
gi|118574580|sp|Q1REI5.2|TOLB_ECOUT RecName: Full=Protein TolB; Flags: Precursor
gi|119371062|sp|Q3Z464.1|TOLB_SHISS RecName: Full=Protein TolB; Flags: Precursor
gi|166988075|sp|A7ZJC2.1|TOLB_ECO24 RecName: Full=Protein TolB; Flags: Precursor
gi|189035982|sp|B1IXY9.1|TOLB_ECOLC RecName: Full=Protein TolB; Flags: Precursor
gi|226705876|sp|B7MFZ3.1|TOLB_ECO45 RecName: Full=Protein TolB; Flags: Precursor
gi|226705877|sp|B5YRE4.1|TOLB_ECO5E RecName: Full=Protein TolB; Flags: Precursor
gi|226705878|sp|B7NMV9.1|TOLB_ECO7I RecName: Full=Protein TolB; Flags: Precursor
gi|226705880|sp|B1X6S1.1|TOLB_ECODH RecName: Full=Protein TolB; Flags: Precursor
gi|226705881|sp|B7N9Y9.1|TOLB_ECOLU RecName: Full=Protein TolB; Flags: Precursor
gi|254764839|sp|B7ULM0.1|TOLB_ECO27 RecName: Full=Protein TolB; Flags: Precursor
gi|254764840|sp|B7LAE7.1|TOLB_ECO55 RecName: Full=Protein TolB; Flags: Precursor
gi|254764841|sp|B7MPN1.1|TOLB_ECO81 RecName: Full=Protein TolB; Flags: Precursor
gi|259533852|sp|C4ZWL5.1|TOLB_ECOBW RecName: Full=Protein TolB; Flags: Precursor
gi|12513673|gb|AAG55076.1|AE005252_12 periplasmic protein involved in the tonb-independent uptake of
group A colicins [Escherichia coli O157:H7 str. EDL933]
gi|1786961|gb|AAC73834.1| periplasmic protein [Escherichia coli str. K-12 substr. MG1655]
gi|13360234|dbj|BAB34198.1| periplasmic protein TolB [Escherichia coli O157:H7 str. Sakai]
gi|30040341|gb|AAP16074.1| periplasmic protein [Shigella flexneri 2a str. 2457T]
gi|73854741|gb|AAZ87448.1| periplasmic protein [Shigella sonnei Ss046]
gi|85674752|dbj|BAA35406.2| periplasmic protein [Escherichia coli str. K12 substr. W3110]
gi|110342540|gb|ABG68777.1| TolB protein precursor [Escherichia coli 536]
gi|157076992|gb|ABV16700.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
E24377A]
gi|169755843|gb|ACA78542.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
ATCC 8739]
gi|169888242|gb|ACB01949.1| periplasmic protein [Escherichia coli str. K-12 substr. DH10B]
gi|188491621|gb|EDU66724.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
53638]
gi|189002974|gb|EDU71960.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
O157:H7 str. EC4076]
gi|189363589|gb|EDU82008.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
O157:H7 str. EC4486]
gi|189373020|gb|EDU91436.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
O157:H7 str. EC869]
gi|208728668|gb|EDZ78269.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
O157:H7 str. EC4206]
gi|208732386|gb|EDZ81074.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
O157:H7 str. EC4045]
gi|209161261|gb|ACI38694.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
O157:H7 str. EC4115]
gi|209776388|gb|ACI86506.1| periplasmic protein TolB [Escherichia coli]
gi|209776390|gb|ACI86507.1| periplasmic protein TolB [Escherichia coli]
gi|209776392|gb|ACI86508.1| periplasmic protein TolB [Escherichia coli]
gi|209776396|gb|ACI86510.1| periplasmic protein TolB [Escherichia coli]
gi|215263834|emb|CAS08172.1| periplasmic protein TolB [Escherichia coli O127:H6 str. E2348/69]
gi|217320613|gb|EEC29037.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
O157:H7 str. TW14588]
gi|218350896|emb|CAU96594.1| periplasmic protein [Escherichia coli 55989]
gi|218364422|emb|CAR02102.1| periplasmic protein [Escherichia coli S88]
gi|218369098|emb|CAR16852.1| periplasmic protein [Escherichia coli IAI39]
gi|218426095|emb|CAR06913.1| periplasmic protein [Escherichia coli ED1a]
gi|218431164|emb|CAR12040.1| periplasmic protein [Escherichia coli UMN026]
gi|222032476|emb|CAP75215.1| Protein tolB [Escherichia coli LF82]
gi|238862004|gb|ACR64002.1| periplasmic protein [Escherichia coli BW2952]
gi|242376502|emb|CAQ31206.1| tolB, subunit of The Tol-Pal Cell Envelope Complex, Colicin S4
Transport System and The Colicin A Import System
[Escherichia coli BL21(DE3)]
gi|253325333|gb|ACT29935.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972711|gb|ACT38382.1| translocation protein TolB precursor [Escherichia coli B str.
REL606]
gi|253976905|gb|ACT42575.1| translocation protein TolB precursor [Escherichia coli BL21(DE3)]
gi|254591297|gb|ACT70658.1| periplasmic protein [Escherichia coli O157:H7 str. TW14359]
gi|257752624|dbj|BAI24126.1| periplasmic protein TolB [Escherichia coli O26:H11 str. 11368]
gi|257758093|dbj|BAI29590.1| periplasmic protein TolB [Escherichia coli O103:H2 str. 12009]
gi|257763227|dbj|BAI34722.1| periplasmic protein TolB [Escherichia coli O111:H- str. 11128]
gi|260450106|gb|ACX40528.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DH1]
gi|281177883|dbj|BAI54213.1| TolB protein [Escherichia coli SE15]
gi|281599944|gb|ADA72928.1| Protein tolB precursor [Shigella flexneri 2002017]
gi|284920527|emb|CBG33589.1| colicin import protein [Escherichia coli 042]
gi|291323827|gb|EFE63249.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
B088]
gi|291428581|gb|EFF01606.1| tolB [Escherichia coli FVEC1412]
gi|291434083|gb|EFF07056.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
B185]
gi|291469592|gb|EFF12076.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
B354]
gi|294492013|gb|ADE90769.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
IHE3034]
gi|298279473|gb|EFI20981.1| tolB [Escherichia coli FVEC1302]
gi|305853616|gb|EFM54055.1| translocation protein TolB [Escherichia coli NC101]
gi|306905693|gb|EFN36221.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
W]
gi|307552591|gb|ADN45366.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
ABU 83972]
gi|307627846|gb|ADN72150.1| translocation protein TolB [Escherichia coli UM146]
gi|309700962|emb|CBJ00259.1| colicin import protein [Escherichia coli ETEC H10407]
gi|310336580|gb|EFQ01747.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
1827-70]
gi|312290267|gb|EFR18150.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
2362-75]
gi|312945264|gb|ADR26091.1| translocation protein TolB [Escherichia coli O83:H1 str. NRG 857C]
gi|313649617|gb|EFS14041.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 2a str. 2457T]
gi|315059983|gb|ADT74310.1| periplasmic protein [Escherichia coli W]
gi|315135397|dbj|BAJ42556.1| tolB [Escherichia coli DH1]
gi|315614616|gb|EFU95258.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3431]
gi|320179419|gb|EFW54376.1| translocation protein TolB [Shigella boydii ATCC 9905]
gi|320193145|gb|EFW67785.1| translocation protein TolB [Escherichia coli O157:H7 str. EC1212]
gi|320198140|gb|EFW72744.1| translocation protein TolB [Escherichia coli EC4100B]
gi|320637998|gb|EFX07767.1| translocation protein TolB [Escherichia coli O157:H7 str. G5101]
gi|320643394|gb|EFX12574.1| translocation protein TolB [Escherichia coli O157:H- str. 493-89]
gi|320648688|gb|EFX17324.1| translocation protein TolB [Escherichia coli O157:H- str. H 2687]
gi|320654326|gb|EFX22379.1| translocation protein TolB [Escherichia coli O55:H7 str. 3256-97 TW
07815]
gi|320659958|gb|EFX27500.1| translocation protein TolB [Escherichia coli O55:H7 str. USDA 5905]
gi|320664784|gb|EFX31922.1| translocation protein TolB [Escherichia coli O157:H7 str. LSU-61]
gi|323153744|gb|EFZ39991.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EPECa14]
gi|323158792|gb|EFZ44805.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
E128010]
gi|323163899|gb|EFZ49709.1| tol-Pal system beta propeller repeat protein TolB [Shigella sonnei
53G]
gi|323180020|gb|EFZ65576.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
OK1180]
gi|323185099|gb|EFZ70465.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
OK1357]
gi|323191085|gb|EFZ76350.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
RN587/1]
gi|323379457|gb|ADX51725.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
KO11FL]
gi|323942963|gb|EGB39127.1| tol-Pal system beta propeller TolB [Escherichia coli E482]
gi|323953134|gb|EGB49001.1| tol-Pal system beta propeller TolB [Escherichia coli H252]
gi|323958484|gb|EGB54190.1| tol-Pal system beta propeller TolB [Escherichia coli H263]
gi|323967343|gb|EGB62764.1| tol-Pal system beta propeller TolB [Escherichia coli M863]
gi|323976279|gb|EGB71369.1| tol-Pal system beta propeller TolB [Escherichia coli TW10509]
gi|324116282|gb|EGC10203.1| tol-Pal system beta propeller TolB [Escherichia coli E1167]
gi|326341511|gb|EGD65301.1| translocation protein TolB [Escherichia coli O157:H7 str. 1044]
gi|326345730|gb|EGD69469.1| translocation protein TolB [Escherichia coli O157:H7 str. 1125]
gi|327254429|gb|EGE66051.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_7v]
gi|330910491|gb|EGH39001.1| TolB protein precursor [Escherichia coli AA86]
gi|331038039|gb|EGI10259.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
H736]
gi|331044643|gb|EGI16770.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
M605]
gi|331050026|gb|EGI22084.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
M718]
gi|331060522|gb|EGI32486.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TA143]
gi|331065463|gb|EGI37356.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TA271]
gi|331075915|gb|EGI47212.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
H591]
gi|331080594|gb|EGI51770.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
H299]
gi|332093801|gb|EGI98855.1| tol-Pal system beta propeller repeat protein TolB [Shigella boydii
5216-82]
gi|332342077|gb|AEE55411.1| translocation protein TolB [Escherichia coli UMNK88]
gi|332760891|gb|EGJ91179.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 4343-70]
gi|332761319|gb|EGJ91605.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 2747-71]
gi|332763940|gb|EGJ94178.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-671]
gi|332768161|gb|EGJ98346.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 2930-71]
gi|333007349|gb|EGK26829.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri VA-6]
gi|333008017|gb|EGK27493.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-218]
gi|333010141|gb|EGK29576.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-272]
gi|333021093|gb|EGK40350.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-227]
gi|333021479|gb|EGK40729.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-304]
gi|333968694|gb|AEG35499.1| Translocation protein [Escherichia coli NA114]
gi|339413692|gb|AEJ55364.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
UMNF18]
gi|340735469|gb|EGR64526.1| translocation protein TolB [Escherichia coli O104:H4 str. 01-09591]
gi|340741341|gb|EGR75489.1| translocation protein TolB [Escherichia coli O104:H4 str. LB226692]
gi|342363207|gb|EGU27317.1| translocation protein TolB [Escherichia coli XH140A]
gi|344192053|gb|EGV46153.1| translocation protein TolB [Escherichia coli XH001]
gi|345341059|gb|EGW73475.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_C165-02]
gi|345343196|gb|EGW75586.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_B2F1]
gi|345344960|gb|EGW77319.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
2534-86]
gi|345353084|gb|EGW85320.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_94C]
gi|345364255|gb|EGW96381.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_DG131-3]
gi|345365128|gb|EGW97237.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_EH250]
gi|345377975|gb|EGX09906.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_MHI813]
gi|345380352|gb|EGX12251.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
G58-1]
gi|345385509|gb|EGX15353.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_H.1.8]
gi|345390059|gb|EGX19858.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_S1191]
gi|345395193|gb|EGX24944.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TX1999]
gi|349736870|gb|AEQ11576.1| periplasmic protein [Escherichia coli O7:K1 str. CE10]
gi|354856422|gb|EHF16880.1| protein tolB [Escherichia coli O104:H4 str. 04-8351]
gi|354857668|gb|EHF18121.1| protein tolB [Escherichia coli O104:H4 str. C227-11]
gi|354864436|gb|EHF24865.1| protein tolB [Escherichia coli O104:H4 str. C236-11]
gi|354874750|gb|EHF35116.1| protein tolB [Escherichia coli O104:H4 str. 09-7901]
gi|354878709|gb|EHF39056.1| protein tolB [Escherichia coli O104:H4 str. 11-4404]
gi|354882501|gb|EHF42823.1| protein tolB [Escherichia coli O104:H4 str. 11-3677]
gi|354885093|gb|EHF45402.1| protein tolB [Escherichia coli O104:H4 str. 11-4522]
gi|354887783|gb|EHF48052.1| protein tolB [Escherichia coli O104:H4 str. 11-4623]
gi|354900375|gb|EHF60509.1| protein tolB [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354903953|gb|EHF64050.1| protein tolB [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354906359|gb|EHF66437.1| protein tolB [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354917256|gb|EHF77223.1| protein tolB [Escherichia coli O104:H4 str. 11-4632 C5]
gi|354921611|gb|EHF81534.1| protein tolB [Escherichia coli O104:H4 str. 11-4632 C4]
gi|355352653|gb|EHG01827.1| An Essential Component Of The Tol- Dependent Translocation System
[Escherichia coli cloneA_i1]
gi|359331439|dbj|BAL37886.1| periplasmic protein [Escherichia coli str. K-12 substr. MDS42]
gi|371595401|gb|EHN84251.1| protein tolB [Escherichia coli H494]
gi|371610230|gb|EHN98760.1| tolB [Escherichia coli H397]
gi|371615963|gb|EHO04340.1| tolB [Escherichia coli B093]
gi|373248034|gb|EHP67467.1| protein tolB [Escherichia coli 4_1_47FAA]
gi|375320454|gb|EHS66409.1| translocation protein TolB [Escherichia coli O157:H43 str. T22]
gi|377850295|gb|EHU15260.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC1C]
gi|377853176|gb|EHU18078.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC1B]
gi|377863029|gb|EHU27836.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC1D]
gi|377867147|gb|EHU31911.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC1E]
gi|377868499|gb|EHU33243.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC2A]
gi|377879444|gb|EHU44017.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC2B]
gi|377883781|gb|EHU48299.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC2D]
gi|377885047|gb|EHU49551.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC2C]
gi|377898052|gb|EHU62415.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC2E]
gi|377900185|gb|EHU64523.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC3A]
gi|377902174|gb|EHU66483.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC3B]
gi|377913525|gb|EHU77662.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC3C]
gi|377917526|gb|EHU81586.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC3D]
gi|377920247|gb|EHU84273.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC3E]
gi|377931543|gb|EHU95405.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC3F]
gi|377933204|gb|EHU97049.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC4A]
gi|377938937|gb|EHV02696.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC4B]
gi|377949385|gb|EHV13021.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC4C]
gi|377951244|gb|EHV14863.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC4D]
gi|377953994|gb|EHV17555.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC5A]
gi|377954305|gb|EHV17865.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC4E]
gi|377967705|gb|EHV31111.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC4F]
gi|377971858|gb|EHV35211.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC5B]
gi|377987528|gb|EHV50714.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC5E]
gi|377998069|gb|EHV61166.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC6B]
gi|377998877|gb|EHV61964.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC6A]
gi|378002856|gb|EHV65905.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC6C]
gi|378012532|gb|EHV75461.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC6D]
gi|378016123|gb|EHV79011.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC6E]
gi|378017950|gb|EHV80817.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC7A]
gi|378026898|gb|EHV89530.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC7C]
gi|378032690|gb|EHV95271.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC7D]
gi|378037016|gb|EHV99551.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC7B]
gi|378040787|gb|EHW03250.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC7E]
gi|378052045|gb|EHW14356.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC8A]
gi|378056225|gb|EHW18472.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC8B]
gi|378061827|gb|EHW24007.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC8C]
gi|378067670|gb|EHW29783.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC8D]
gi|378071859|gb|EHW33926.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC8E]
gi|378081045|gb|EHW43001.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC9A]
gi|378081729|gb|EHW43678.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC9B]
gi|378089849|gb|EHW51690.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC9C]
gi|378094464|gb|EHW56262.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC9D]
gi|378101163|gb|EHW62851.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC9E]
gi|378106245|gb|EHW67876.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC10A]
gi|378115406|gb|EHW76946.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC10B]
gi|378118258|gb|EHW79764.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC10C]
gi|378121160|gb|EHW82618.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC10D]
gi|378132127|gb|EHW93479.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC10E]
gi|378135703|gb|EHW97006.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC11A]
gi|378138628|gb|EHW99881.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC10F]
gi|378145736|gb|EHX06892.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC11B]
gi|378152419|gb|EHX13516.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC11D]
gi|378155811|gb|EHX16867.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC11C]
gi|378160649|gb|EHX21642.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC11E]
gi|378173718|gb|EHX34552.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC12B]
gi|378174074|gb|EHX34902.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC12A]
gi|378175687|gb|EHX36502.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC12C]
gi|378188796|gb|EHX49390.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC13A]
gi|378190316|gb|EHX50901.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC12D]
gi|378193423|gb|EHX53962.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC12E]
gi|378204468|gb|EHX64884.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC13B]
gi|378207698|gb|EHX68087.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC13D]
gi|378208012|gb|EHX68397.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC13C]
gi|378218766|gb|EHX79036.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC13E]
gi|378221668|gb|EHX81913.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC14A]
gi|378224471|gb|EHX84673.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC14B]
gi|378233067|gb|EHX93159.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC14C]
gi|378236485|gb|EHX96531.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC14D]
gi|378242902|gb|EHY02850.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC15A]
gi|378250788|gb|EHY10691.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC15B]
gi|378250969|gb|EHY10870.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC15C]
gi|378257121|gb|EHY16963.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC15D]
gi|378261007|gb|EHY20804.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC15E]
gi|380349240|gb|EIA37514.1| translocation protein TolB [Escherichia coli SCI-07]
gi|383102076|gb|AFG39585.1| Protein tolB precursor [Escherichia coli P12b]
gi|383394017|gb|AFH18975.1| translocation protein TolB [Escherichia coli KO11FL]
gi|383404200|gb|AFH10443.1| translocation protein TolB [Escherichia coli W]
gi|385154090|gb|EIF16109.1| translocation protein TolB [Escherichia coli O32:H37 str. P4]
gi|385539803|gb|EIF86633.1| protein tolB [Escherichia coli M919]
gi|385707387|gb|EIG44418.1| protein tolB [Escherichia coli B799]
gi|385712442|gb|EIG49394.1| protein tolB [Escherichia coli H730]
gi|386123171|gb|EIG71771.1| protein tolB [Escherichia sp. 4_1_40B]
gi|386138224|gb|EIG79384.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
1.2741]
gi|386169232|gb|EIH35740.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0497]
gi|386174117|gb|EIH46118.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0741]
gi|386179581|gb|EIH57060.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3.2608]
gi|386186309|gb|EIH69026.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
93.0624]
gi|386190649|gb|EIH79397.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
4.0522]
gi|386200245|gb|EIH99236.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.154]
gi|386206864|gb|EII11370.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
5.0959]
gi|386217192|gb|EII33681.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
4.0967]
gi|386232767|gb|EII64752.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
2.4168]
gi|386242765|gb|EII84500.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3003]
gi|386247694|gb|EII93867.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW07793]
gi|386255978|gb|EIJ05666.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
B41]
gi|386262120|gb|EIJ17567.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
900105 (10e)]
gi|386794768|gb|AFJ27802.1| translocation protein TolB [Escherichia coli Xuzhou21]
gi|388334155|gb|EIL00761.1| translocation protein TolB [Escherichia coli O111:H11 str. CVM9534]
gi|388336273|gb|EIL02820.1| translocation protein TolB [Escherichia coli O103:H25 str. CVM9340]
gi|388337650|gb|EIL04147.1| translocation protein TolB [Escherichia coli O103:H2 str. CVM9450]
gi|388346987|gb|EIL12687.1| translocation protein TolB [Escherichia coli O111:H11 str. CVM9545]
gi|388357172|gb|EIL21764.1| translocation protein TolB [Escherichia coli O111:H8 str. CVM9570]
gi|388358921|gb|EIL23305.1| translocation protein TolB [Escherichia coli O111:H8 str. CVM9574]
gi|388366008|gb|EIL29765.1| translocation protein TolB [Escherichia coli O26:H11 str. CVM9942]
gi|388378226|gb|EIL40984.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Escherichia coli O26:H11 str. CVM10026]
gi|388389994|gb|EIL51498.1| translocation protein TolB [Escherichia coli 541-15]
gi|388393140|gb|EIL54533.1| translocation protein TolB [Escherichia coli KD2]
gi|388401305|gb|EIL61959.1| translocation protein TolB [Escherichia coli 576-1]
gi|388401527|gb|EIL62167.1| translocation protein TolB [Escherichia coli 75]
gi|388404879|gb|EIL65322.1| translocation protein TolB [Escherichia coli 541-1]
gi|388412743|gb|EIL72780.1| translocation protein TolB [Escherichia coli CUMT8]
gi|388416106|gb|EIL76008.1| translocation protein TolB [Escherichia coli HM605]
gi|390650393|gb|EIN28809.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK1996]
gi|390652410|gb|EIN30630.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FDA517]
gi|390652755|gb|EIN30939.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FDA505]
gi|390669418|gb|EIN46061.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
93-001]
gi|390672367|gb|EIN48672.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK1990]
gi|390672928|gb|EIN49184.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK1985]
gi|390688317|gb|EIN63395.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA3]
gi|390691622|gb|EIN66358.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA9]
gi|390692528|gb|EIN67210.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA5]
gi|390708071|gb|EIN81354.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA10]
gi|390709850|gb|EIN82905.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA15]
gi|390711364|gb|EIN84338.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA14]
gi|390714415|gb|EIN87320.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA22]
gi|390733012|gb|EIO04611.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA24]
gi|390733105|gb|EIO04701.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA25]
gi|390736232|gb|EIO07574.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA28]
gi|390751497|gb|EIO21389.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA31]
gi|390751745|gb|EIO21619.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA32]
gi|390754437|gb|EIO24021.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA33]
gi|390762718|gb|EIO31976.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA40]
gi|390775771|gb|EIO43771.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA41]
gi|390777651|gb|EIO45438.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA42]
gi|390782331|gb|EIO49973.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA39]
gi|390785276|gb|EIO52827.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW06591]
gi|390794506|gb|EIO61797.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW10246]
gi|390801338|gb|EIO68399.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW11039]
gi|390808888|gb|EIO75707.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW09109]
gi|390809069|gb|EIO75875.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW07945]
gi|390818952|gb|EIO85308.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW10119]
gi|390822264|gb|EIO88392.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW09098]
gi|390836831|gb|EIP01310.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4203]
gi|390839527|gb|EIP03629.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4196]
gi|390840721|gb|EIP04725.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW09195]
gi|390855049|gb|EIP17801.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW14301]
gi|390858626|gb|EIP21003.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW14313]
gi|390858771|gb|EIP21140.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4421]
gi|390871325|gb|EIP32753.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4422]
gi|390875608|gb|EIP36617.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4013]
gi|390885611|gb|EIP45818.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4402]
gi|390887664|gb|EIP47600.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4439]
gi|390894150|gb|EIP53682.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4436]
gi|390903559|gb|EIP62605.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1738]
gi|390910032|gb|EIP68795.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4437]
gi|390911651|gb|EIP70345.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1734]
gi|390914104|gb|EIP72649.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC4448]
gi|390924508|gb|EIP82266.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1863]
gi|390925926|gb|EIP83534.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1845]
gi|391259051|gb|EIQ18132.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-1770]
gi|391273405|gb|EIQ32230.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-404]
gi|391288335|gb|EIQ46840.1| tol-Pal system beta propeller repeat protein TolB [Shigella sonnei
3226-85]
gi|391296573|gb|EIQ54662.1| tol-Pal system beta propeller repeat protein TolB [Shigella sonnei
4822-66]
gi|391309204|gb|EIQ66881.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EPECa12]
gi|391314474|gb|EIQ72024.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EPEC C342-62]
gi|394389121|gb|EJE66312.1| translocation protein TolB [Escherichia coli O111:H8 str. CVM9634]
gi|394390901|gb|EJE67830.1| translocation protein TolB [Escherichia coli O26:H11 str. CVM10224]
gi|394402928|gb|EJE78608.1| translocation protein TolB [Escherichia coli O26:H11 str. CVM10021]
gi|394406870|gb|EJE81783.1| translocation protein TolB [Escherichia coli O111:H11 str. CVM9553]
gi|394413335|gb|EJE87377.1| translocation protein TolB [Escherichia coli O111:H11 str. CVM9455]
gi|394421445|gb|EJE94917.1| translocation protein TolB [Escherichia coli O26:H11 str. CVM9952]
gi|394424204|gb|EJE97378.1| translocation protein TolB [Escherichia coli O26:H11 str. CVM10030]
gi|397786434|gb|EJK97270.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
STEC_O31]
gi|397900980|gb|EJL17334.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 6603-63]
gi|397902943|gb|EJL19252.1| tol-Pal system beta propeller repeat protein TolB [Shigella sonnei
str. Moseley]
gi|404292426|gb|EJZ49250.1| protein tolB [Escherichia sp. 1_1_43]
gi|406778827|gb|AFS58251.1| translocation protein TolB [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407055409|gb|AFS75460.1| translocation protein TolB [Escherichia coli O104:H4 str.
2011C-3493]
gi|407064191|gb|AFS85238.1| translocation protein TolB [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408071897|gb|EKH06228.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA7]
gi|408075634|gb|EKH09866.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK920]
gi|408085751|gb|EKH19331.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA34]
gi|408089544|gb|EKH22849.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FDA506]
gi|408094940|gb|EKH27935.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FDA507]
gi|408101856|gb|EKH34283.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FDA504]
gi|408109696|gb|EKH41574.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK1999]
gi|408116322|gb|EKH47631.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK1997]
gi|408121768|gb|EKH52674.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
NE1487]
gi|408129989|gb|EKH60186.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
NE037]
gi|408131883|gb|EKH61900.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK2001]
gi|408150042|gb|EKH78661.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA23]
gi|408152234|gb|EKH80676.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA49]
gi|408157455|gb|EKH85607.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA45]
gi|408171800|gb|EKH98900.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MA6]
gi|408173967|gb|EKI00965.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
5905]
gi|408186580|gb|EKI12612.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
CB7326]
gi|408191196|gb|EKI16813.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC96038]
gi|408191480|gb|EKI17086.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
5412]
gi|408206636|gb|EKI31417.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
ARS4.2123]
gi|408218088|gb|EKI42321.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3006]
gi|408221336|gb|EKI45290.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
07798]
gi|408231372|gb|EKI54646.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
N1]
gi|408232522|gb|EKI55718.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA38]
gi|408238399|gb|EKI61204.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1735]
gi|408248715|gb|EKI70720.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1736]
gi|408252473|gb|EKI74119.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1737]
gi|408258828|gb|EKI80052.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1846]
gi|408268071|gb|EKI88483.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1847]
gi|408269384|gb|EKI89630.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1848]
gi|408278589|gb|EKI98297.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1849]
gi|408284838|gb|EKJ03906.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1850]
gi|408287250|gb|EKJ06130.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1856]
gi|408300141|gb|EKJ17875.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1862]
gi|408300444|gb|EKJ18144.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1864]
gi|408309252|gb|EKJ26448.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1865]
gi|408316860|gb|EKJ33114.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1868]
gi|408317463|gb|EKJ33699.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1866]
gi|408331135|gb|EKJ46336.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1869]
gi|408336250|gb|EKJ51047.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
NE098]
gi|408337871|gb|EKJ52554.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
EC1870]
gi|408347230|gb|EKJ61460.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
0.1288]
gi|408350310|gb|EKJ64193.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
FRIK523]
gi|408352887|gb|EKJ66417.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
0.1304]
gi|408558239|gb|EKK34623.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
5.2239]
gi|408558676|gb|EKK35036.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3.4870]
gi|408559818|gb|EKK36118.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
6.0172]
gi|408568672|gb|EKK44698.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
8.0569]
gi|408584962|gb|EKK59877.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
8.0586]
gi|408589397|gb|EKK63912.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
8.2524]
gi|408591285|gb|EKK65728.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
10.0833]
gi|408603846|gb|EKK77462.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
10.0869]
gi|408605323|gb|EKK78839.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
8.0416]
gi|408609300|gb|EKK82682.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
88.0221]
gi|408616701|gb|EKK89846.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
10.0821]
gi|412961987|emb|CCK45900.1| periplasmic protein [Escherichia coli chi7122]
gi|412968574|emb|CCJ43199.1| periplasmic protein involved in the tonb-independent uptake of
group A colicins [Escherichia coli]
gi|421940334|gb|EKT97808.1| translocation protein TolB [Escherichia coli O111:H8 str.
CFSAN001632]
gi|421942025|gb|EKT99384.1| translocation protein TolB [Escherichia coli O111:H11 str.
CFSAN001630]
gi|421944430|gb|EKU01684.1| translocation protein TolB [Escherichia coli O26:H11 str.
CFSAN001629]
gi|427216210|gb|EKV85347.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
89.0511]
gi|427216505|gb|EKV85624.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
88.1467]
gi|427233393|gb|EKW01143.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
90.2281]
gi|427233513|gb|EKW01251.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
90.0039]
gi|427235722|gb|EKW03336.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
90.0091]
gi|427251044|gb|EKW17648.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
93.0056]
gi|427252515|gb|EKW19000.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
93.0055]
gi|427253771|gb|EKW20165.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
94.0618]
gi|427265074|gb|EKW30697.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
95.1288]
gi|427269930|gb|EKW34837.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
95.0943]
gi|427269985|gb|EKW34886.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
95.0183]
gi|427286019|gb|EKW49909.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0428]
gi|427291493|gb|EKW54891.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0427]
gi|427293257|gb|EKW56518.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0939]
gi|427304467|gb|EKW67112.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
97.0003]
gi|427310177|gb|EKW72441.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0107]
gi|427321066|gb|EKW82778.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
97.1742]
gi|427321765|gb|EKW83435.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
97.0007]
gi|427333715|gb|EKW94811.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0713]
gi|427333809|gb|EKW94897.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0678]
gi|427336505|gb|EKW97467.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0672]
gi|429259597|gb|EKY43251.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0109]
gi|429261572|gb|EKY44986.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
97.0010]
gi|429350536|gb|EKY87266.1| protein tolB [Escherichia coli O104:H4 str. 11-02030]
gi|429351951|gb|EKY88670.1| protein tolB [Escherichia coli O104:H4 str. 11-02033-1]
gi|429352557|gb|EKY89271.1| protein tolB [Escherichia coli O104:H4 str. 11-02092]
gi|429367192|gb|EKZ03793.1| protein tolB [Escherichia coli O104:H4 str. 11-02093]
gi|429368103|gb|EKZ04695.1| protein tolB [Escherichia coli O104:H4 str. 11-02281]
gi|429369840|gb|EKZ06414.1| protein tolB [Escherichia coli O104:H4 str. 11-02318]
gi|429381885|gb|EKZ18360.1| protein tolB [Escherichia coli O104:H4 str. 11-02913]
gi|429385218|gb|EKZ21672.1| protein tolB [Escherichia coli O104:H4 str. 11-03943]
gi|429385741|gb|EKZ22194.1| protein tolB [Escherichia coli O104:H4 str. 11-03439]
gi|429397434|gb|EKZ33781.1| protein tolB [Escherichia coli O104:H4 str. 11-04080]
gi|429398014|gb|EKZ34358.1| protein tolB [Escherichia coli O104:H4 str. Ec11-9990]
gi|429398387|gb|EKZ34729.1| protein tolB [Escherichia coli O104:H4 str. Ec11-9450]
gi|429409163|gb|EKZ45393.1| protein tolB [Escherichia coli O104:H4 str. Ec11-4984]
gi|429417623|gb|EKZ53770.1| protein tolB [Escherichia coli O104:H4 str. Ec11-4987]
gi|429421291|gb|EKZ57412.1| protein tolB [Escherichia coli O104:H4 str. Ec11-4988]
gi|429423032|gb|EKZ59140.1| protein tolB [Escherichia coli O104:H4 str. Ec11-4986]
gi|429427033|gb|EKZ63118.1| protein tolB [Escherichia coli O104:H4 str. Ec11-5603]
gi|429434521|gb|EKZ70547.1| protein tolB [Escherichia coli O104:H4 str. Ec11-5604]
gi|429439504|gb|EKZ75487.1| protein tolB [Escherichia coli O104:H4 str. Ec12-0465]
gi|429443774|gb|EKZ79722.1| protein tolB [Escherichia coli O104:H4 str. Ec11-6006]
gi|429450552|gb|EKZ86447.1| protein tolB [Escherichia coli O104:H4 str. Ec12-0466]
gi|429455866|gb|EKZ91714.1| protein tolB [Escherichia coli O104:H4 str. Ec11-9941]
gi|430878364|gb|ELC01794.1| protein tolB [Escherichia coli KTE2]
gi|430879841|gb|ELC03172.1| protein tolB [Escherichia coli KTE4]
gi|430888404|gb|ELC11123.1| protein tolB [Escherichia coli KTE10]
gi|430890021|gb|ELC12668.1| protein tolB [Escherichia coli KTE5]
gi|430900957|gb|ELC22971.1| protein tolB [Escherichia coli KTE12]
gi|430909473|gb|ELC30845.1| protein tolB [Escherichia coli KTE16]
gi|430911138|gb|ELC32427.1| protein tolB [Escherichia coli KTE15]
gi|430917599|gb|ELC38643.1| protein tolB [Escherichia coli KTE25]
gi|430922008|gb|ELC42829.1| protein tolB [Escherichia coli KTE21]
gi|430928651|gb|ELC49199.1| protein tolB [Escherichia coli KTE26]
gi|430932478|gb|ELC52901.1| protein tolB [Escherichia coli KTE28]
gi|430937246|gb|ELC57501.1| protein tolB [Escherichia coli KTE39]
gi|430943244|gb|ELC63369.1| protein tolB [Escherichia coli KTE44]
gi|430947294|gb|ELC67001.1| protein tolB [Escherichia coli KTE178]
gi|430955891|gb|ELC74574.1| protein tolB [Escherichia coli KTE187]
gi|430958846|gb|ELC77423.1| protein tolB [Escherichia coli KTE181]
gi|430966524|gb|ELC83930.1| protein tolB [Escherichia coli KTE188]
gi|430969132|gb|ELC86288.1| protein tolB [Escherichia coli KTE189]
gi|430974133|gb|ELC91071.1| protein tolB [Escherichia coli KTE193]
gi|430975585|gb|ELC92478.1| protein tolB [Escherichia coli KTE191]
gi|430984832|gb|ELD01452.1| protein tolB [Escherichia coli KTE201]
gi|430991712|gb|ELD08115.1| protein tolB [Escherichia coli KTE204]
gi|430996923|gb|ELD13196.1| protein tolB [Escherichia coli KTE205]
gi|431000182|gb|ELD16256.1| protein tolB [Escherichia coli KTE206]
gi|431009202|gb|ELD23826.1| protein tolB [Escherichia coli KTE208]
gi|431009787|gb|ELD24397.1| protein tolB [Escherichia coli KTE210]
gi|431017985|gb|ELD31436.1| protein tolB [Escherichia coli KTE212]
gi|431024116|gb|ELD37309.1| protein tolB [Escherichia coli KTE213]
gi|431027654|gb|ELD40714.1| protein tolB [Escherichia coli KTE214]
gi|431031859|gb|ELD44592.1| protein tolB [Escherichia coli KTE216]
gi|431041747|gb|ELD52243.1| protein tolB [Escherichia coli KTE220]
gi|431044498|gb|ELD54771.1| protein tolB [Escherichia coli KTE224]
gi|431044788|gb|ELD55047.1| protein tolB [Escherichia coli KTE228]
gi|431054393|gb|ELD63971.1| protein tolB [Escherichia coli KTE230]
gi|431056815|gb|ELD66308.1| protein tolB [Escherichia coli KTE233]
gi|431063242|gb|ELD72492.1| protein tolB [Escherichia coli KTE234]
gi|431073063|gb|ELD80800.1| protein tolB [Escherichia coli KTE235]
gi|431077129|gb|ELD84397.1| protein tolB [Escherichia coli KTE236]
gi|431084775|gb|ELD90902.1| protein tolB [Escherichia coli KTE237]
gi|431086980|gb|ELD92996.1| protein tolB [Escherichia coli KTE47]
gi|431094163|gb|ELD99813.1| protein tolB [Escherichia coli KTE49]
gi|431098760|gb|ELE04072.1| protein tolB [Escherichia coli KTE51]
gi|431102854|gb|ELE07532.1| protein tolB [Escherichia coli KTE53]
gi|431108063|gb|ELE12225.1| protein tolB [Escherichia coli KTE56]
gi|431111018|gb|ELE14935.1| protein tolB [Escherichia coli KTE55]
gi|431119820|gb|ELE22819.1| protein tolB [Escherichia coli KTE57]
gi|431123457|gb|ELE26195.1| protein tolB [Escherichia coli KTE58]
gi|431132408|gb|ELE34413.1| protein tolB [Escherichia coli KTE60]
gi|431133242|gb|ELE35238.1| protein tolB [Escherichia coli KTE62]
gi|431140266|gb|ELE42041.1| protein tolB [Escherichia coli KTE67]
gi|431143397|gb|ELE45130.1| protein tolB [Escherichia coli KTE66]
gi|431151234|gb|ELE52269.1| protein tolB [Escherichia coli KTE72]
gi|431156958|gb|ELE57619.1| protein tolB [Escherichia coli KTE75]
gi|431162228|gb|ELE62683.1| protein tolB [Escherichia coli KTE76]
gi|431164998|gb|ELE65378.1| protein tolB [Escherichia coli KTE77]
gi|431173945|gb|ELE74015.1| protein tolB [Escherichia coli KTE80]
gi|431184861|gb|ELE84607.1| protein tolB [Escherichia coli KTE83]
gi|431193013|gb|ELE92354.1| protein tolB [Escherichia coli KTE87]
gi|431194366|gb|ELE93631.1| protein tolB [Escherichia coli KTE93]
gi|431202324|gb|ELF01017.1| protein tolB [Escherichia coli KTE111]
gi|431203714|gb|ELF02307.1| protein tolB [Escherichia coli KTE116]
gi|431213179|gb|ELF11096.1| protein tolB [Escherichia coli KTE119]
gi|431218036|gb|ELF15522.1| protein tolB [Escherichia coli KTE142]
gi|431224459|gb|ELF21684.1| protein tolB [Escherichia coli KTE156]
gi|431224562|gb|ELF21783.1| protein tolB [Escherichia coli KTE143]
gi|431229377|gb|ELF26027.1| protein tolB [Escherichia coli KTE161]
gi|431236735|gb|ELF31940.1| protein tolB [Escherichia coli KTE162]
gi|431246540|gb|ELF40804.1| protein tolB [Escherichia coli KTE169]
gi|431246606|gb|ELF40865.1| protein tolB [Escherichia coli KTE171]
gi|431251713|gb|ELF45720.1| protein tolB [Escherichia coli KTE6]
gi|431259356|gb|ELF51730.1| protein tolB [Escherichia coli KTE8]
gi|431266402|gb|ELF57963.1| protein tolB [Escherichia coli KTE9]
gi|431268056|gb|ELF59570.1| protein tolB [Escherichia coli KTE17]
gi|431275508|gb|ELF66537.1| protein tolB [Escherichia coli KTE18]
gi|431278142|gb|ELF69143.1| protein tolB [Escherichia coli KTE45]
gi|431285787|gb|ELF76622.1| protein tolB [Escherichia coli KTE42]
gi|431286614|gb|ELF77440.1| protein tolB [Escherichia coli KTE23]
gi|431294149|gb|ELF84329.1| protein tolB [Escherichia coli KTE43]
gi|431299369|gb|ELF88941.1| protein tolB [Escherichia coli KTE29]
gi|431305094|gb|ELF93610.1| protein tolB [Escherichia coli KTE22]
gi|431311384|gb|ELF99550.1| protein tolB [Escherichia coli KTE46]
gi|431312954|gb|ELG00938.1| protein tolB [Escherichia coli KTE48]
gi|431317934|gb|ELG05704.1| protein tolB [Escherichia coli KTE50]
gi|431320468|gb|ELG08110.1| protein tolB [Escherichia coli KTE54]
gi|431330223|gb|ELG17505.1| protein tolB [Escherichia coli KTE59]
gi|431331571|gb|ELG18822.1| protein tolB [Escherichia coli KTE63]
gi|431341541|gb|ELG28548.1| protein tolB [Escherichia coli KTE65]
gi|431341807|gb|ELG28804.1| protein tolB [Escherichia coli KTE78]
gi|431345247|gb|ELG32173.1| protein tolB [Escherichia coli KTE79]
gi|431350926|gb|ELG37729.1| protein tolB [Escherichia coli KTE84]
gi|431356965|gb|ELG43651.1| protein tolB [Escherichia coli KTE101]
gi|431357005|gb|ELG43689.1| protein tolB [Escherichia coli KTE91]
gi|431367290|gb|ELG53774.1| protein tolB [Escherichia coli KTE115]
gi|431371006|gb|ELG56799.1| protein tolB [Escherichia coli KTE118]
gi|431374415|gb|ELG60007.1| protein tolB [Escherichia coli KTE123]
gi|431379745|gb|ELG64670.1| protein tolB [Escherichia coli KTE135]
gi|431387746|gb|ELG71568.1| protein tolB [Escherichia coli KTE136]
gi|431391555|gb|ELG75195.1| protein tolB [Escherichia coli KTE140]
gi|431397153|gb|ELG80612.1| protein tolB [Escherichia coli KTE141]
gi|431401793|gb|ELG85127.1| protein tolB [Escherichia coli KTE144]
gi|431407758|gb|ELG90964.1| protein tolB [Escherichia coli KTE146]
gi|431413281|gb|ELG96073.1| protein tolB [Escherichia coli KTE154]
gi|431419492|gb|ELH01842.1| protein tolB [Escherichia coli KTE158]
gi|431424454|gb|ELH06550.1| protein tolB [Escherichia coli KTE165]
gi|431429010|gb|ELH10941.1| protein tolB [Escherichia coli KTE192]
gi|431436350|gb|ELH17956.1| protein tolB [Escherichia coli KTE194]
gi|431444366|gb|ELH25389.1| protein tolB [Escherichia coli KTE190]
gi|431446552|gb|ELH27298.1| protein tolB [Escherichia coli KTE173]
gi|431448668|gb|ELH29383.1| protein tolB [Escherichia coli KTE175]
gi|431455995|gb|ELH36345.1| protein tolB [Escherichia coli KTE184]
gi|431462580|gb|ELH42791.1| protein tolB [Escherichia coli KTE196]
gi|431469898|gb|ELH49824.1| protein tolB [Escherichia coli KTE197]
gi|431474034|gb|ELH53857.1| protein tolB [Escherichia coli KTE203]
gi|431478341|gb|ELH58090.1| protein tolB [Escherichia coli KTE202]
gi|431482097|gb|ELH61803.1| protein tolB [Escherichia coli KTE209]
gi|431485995|gb|ELH65652.1| protein tolB [Escherichia coli KTE207]
gi|431494214|gb|ELH73804.1| protein tolB [Escherichia coli KTE211]
gi|431498035|gb|ELH77251.1| protein tolB [Escherichia coli KTE217]
gi|431506117|gb|ELH84721.1| protein tolB [Escherichia coli KTE215]
gi|431509401|gb|ELH87654.1| protein tolB [Escherichia coli KTE218]
gi|431513839|gb|ELH91919.1| protein tolB [Escherichia coli KTE223]
gi|431517533|gb|ELH95055.1| protein tolB [Escherichia coli KTE227]
gi|431519633|gb|ELH97085.1| protein tolB [Escherichia coli KTE229]
gi|431534817|gb|ELI11207.1| protein tolB [Escherichia coli KTE104]
gi|431536591|gb|ELI12760.1| protein tolB [Escherichia coli KTE105]
gi|431539910|gb|ELI15546.1| protein tolB [Escherichia coli KTE106]
gi|431545525|gb|ELI20177.1| protein tolB [Escherichia coli KTE109]
gi|431554892|gb|ELI28766.1| protein tolB [Escherichia coli KTE113]
gi|431558847|gb|ELI32431.1| protein tolB [Escherichia coli KTE112]
gi|431559596|gb|ELI33144.1| protein tolB [Escherichia coli KTE117]
gi|431573607|gb|ELI46404.1| protein tolB [Escherichia coli KTE124]
gi|431575251|gb|ELI47998.1| protein tolB [Escherichia coli KTE122]
gi|431587386|gb|ELI58763.1| protein tolB [Escherichia coli KTE125]
gi|431590110|gb|ELI61218.1| protein tolB [Escherichia coli KTE128]
gi|431592884|gb|ELI63453.1| protein tolB [Escherichia coli KTE129]
gi|431600559|gb|ELI70228.1| protein tolB [Escherichia coli KTE131]
gi|431605463|gb|ELI74852.1| protein tolB [Escherichia coli KTE133]
gi|431609388|gb|ELI78713.1| protein tolB [Escherichia coli KTE137]
gi|431613996|gb|ELI83162.1| protein tolB [Escherichia coli KTE138]
gi|431618900|gb|ELI87828.1| protein tolB [Escherichia coli KTE139]
gi|431622120|gb|ELI90904.1| protein tolB [Escherichia coli KTE145]
gi|431630955|gb|ELI99279.1| protein tolB [Escherichia coli KTE150]
gi|431634044|gb|ELJ02305.1| protein tolB [Escherichia coli KTE148]
gi|431636725|gb|ELJ04853.1| protein tolB [Escherichia coli KTE153]
gi|431648520|gb|ELJ15916.1| protein tolB [Escherichia coli KTE157]
gi|431649443|gb|ELJ16800.1| protein tolB [Escherichia coli KTE160]
gi|431651040|gb|ELJ18345.1| protein tolB [Escherichia coli KTE163]
gi|431662153|gb|ELJ28938.1| protein tolB [Escherichia coli KTE166]
gi|431664785|gb|ELJ31517.1| protein tolB [Escherichia coli KTE167]
gi|431665718|gb|ELJ32432.1| protein tolB [Escherichia coli KTE168]
gi|431676503|gb|ELJ42621.1| protein tolB [Escherichia coli KTE174]
gi|431678217|gb|ELJ44225.1| protein tolB [Escherichia coli KTE176]
gi|431681465|gb|ELJ47254.1| protein tolB [Escherichia coli KTE177]
gi|431691207|gb|ELJ56667.1| protein tolB [Escherichia coli KTE179]
gi|431693546|gb|ELJ58959.1| protein tolB [Escherichia coli KTE180]
gi|431695794|gb|ELJ61088.1| protein tolB [Escherichia coli KTE232]
gi|431709488|gb|ELJ73951.1| protein tolB [Escherichia coli KTE82]
gi|431711369|gb|ELJ75722.1| protein tolB [Escherichia coli KTE85]
gi|431720641|gb|ELJ84667.1| protein tolB [Escherichia coli KTE90]
gi|431725019|gb|ELJ88931.1| protein tolB [Escherichia coli KTE94]
gi|431725563|gb|ELJ89412.1| protein tolB [Escherichia coli KTE95]
gi|431732544|gb|ELJ95997.1| protein tolB [Escherichia coli KTE97]
gi|431735811|gb|ELJ99155.1| protein tolB [Escherichia coli KTE99]
gi|432348126|gb|ELL42578.1| translocation protein TolB [Escherichia coli J96]
gi|441712371|emb|CCQ07072.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Escherichia
coli Nissle 1917]
gi|443421273|gb|AGC86177.1| translocation protein TolB [Escherichia coli APEC O78]
gi|444542016|gb|ELV21421.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0814]
gi|444547339|gb|ELV25960.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0815]
gi|444550184|gb|ELV28311.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
09BKT078844]
gi|444564341|gb|ELV41286.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0839]
gi|444566599|gb|ELV43408.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0816]
gi|444570776|gb|ELV47292.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0848]
gi|444581469|gb|ELV57309.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.1753]
gi|444584649|gb|ELV60271.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.1775]
gi|444599206|gb|ELV74097.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
ATCC 700728]
gi|444599644|gb|ELV74510.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA11]
gi|444607630|gb|ELV82201.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.1805]
gi|444613989|gb|ELV88232.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA13]
gi|444614102|gb|ELV88342.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA19]
gi|444622577|gb|ELV96528.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA2]
gi|444623974|gb|ELV97883.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA48]
gi|444632023|gb|ELW05601.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA47]
gi|444636717|gb|ELW10107.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA8]
gi|444649575|gb|ELW22457.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.1781]
gi|444653083|gb|ELW25818.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.1762]
gi|444662115|gb|ELW34383.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA35]
gi|444666434|gb|ELW38505.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3.4880]
gi|444672341|gb|ELW44071.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
95.0083]
gi|444674222|gb|ELW45786.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
99.0670]
gi|449311275|gb|EMD01661.1| translocation protein TolB [Escherichia coli S17]
gi|449322184|gb|EMD12184.1| translocation protein TolB [Escherichia coli O08]
gi|449324485|gb|EMD14417.1| translocation protein TolB [Escherichia coli SEPT362]
Length = 430
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSNG 353
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|26246709|ref|NP_752749.1| translocation protein TolB [Escherichia coli CFT073]
gi|91209774|ref|YP_539760.1| translocation protein TolB [Escherichia coli UTI89]
gi|117622931|ref|YP_851844.1| translocation protein TolB [Escherichia coli APEC O1]
gi|170683440|ref|YP_001742851.1| translocation protein TolB [Escherichia coli SMS-3-5]
gi|209917991|ref|YP_002292075.1| translocation protein TolB [Escherichia coli SE11]
gi|227884293|ref|ZP_04002098.1| TolB protein [Escherichia coli 83972]
gi|237707297|ref|ZP_04537778.1| translocation protein TolB [Escherichia sp. 3_2_53FAA]
gi|261224451|ref|ZP_05938732.1| translocation protein TolB [Escherichia coli O157:H7 str. FRIK2000]
gi|261254557|ref|ZP_05947090.1| translocation protein TolB [Escherichia coli O157:H7 str. FRIK966]
gi|300816390|ref|ZP_07096612.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 107-1]
gi|300822971|ref|ZP_07103106.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 119-7]
gi|300900747|ref|ZP_07118896.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 198-1]
gi|300906999|ref|ZP_07124668.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 84-1]
gi|300918401|ref|ZP_07135001.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 115-1]
gi|300926144|ref|ZP_07141957.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 182-1]
gi|300929454|ref|ZP_07144922.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 187-1]
gi|300937787|ref|ZP_07152584.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 21-1]
gi|300947179|ref|ZP_07161389.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 116-1]
gi|300957689|ref|ZP_07169878.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 175-1]
gi|300992345|ref|ZP_07179868.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 200-1]
gi|300993166|ref|ZP_07180249.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 45-1]
gi|301020788|ref|ZP_07184852.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 69-1]
gi|301027078|ref|ZP_07190450.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 196-1]
gi|301051340|ref|ZP_07198163.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 185-1]
gi|301305228|ref|ZP_07211326.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 124-1]
gi|301327933|ref|ZP_07221104.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 78-1]
gi|301648045|ref|ZP_07247812.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 146-1]
gi|309797455|ref|ZP_07691847.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 145-7]
gi|331656759|ref|ZP_08357721.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TA206]
gi|332282411|ref|ZP_08394824.1| translocation protein TolB [Shigella sp. D9]
gi|386628281|ref|YP_006148001.1| translocation protein TolB [Escherichia coli str. 'clone D i2']
gi|386633201|ref|YP_006152920.1| translocation protein TolB [Escherichia coli str. 'clone D i14']
gi|415860629|ref|ZP_11534344.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 85-1]
gi|415875882|ref|ZP_11542502.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 79-10]
gi|417133447|ref|ZP_11978232.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
5.0588]
gi|417141089|ref|ZP_11984081.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
97.0259]
gi|417144242|ref|ZP_11986048.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
1.2264]
gi|417219207|ref|ZP_12024049.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
JB1-95]
gi|417242607|ref|ZP_12037824.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
9.0111]
gi|417263903|ref|ZP_12051299.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
2.3916]
gi|417311446|ref|ZP_12098181.1| Protein tolB [Escherichia coli PCN033]
gi|417863968|ref|ZP_12509015.1| hypothetical protein C22711_0901 [Escherichia coli O104:H4 str.
C227-11]
gi|418042821|ref|ZP_12681006.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
W26]
gi|418958967|ref|ZP_13510873.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
J53]
gi|419805426|ref|ZP_14330563.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
AI27]
gi|421777648|ref|ZP_16214241.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
AD30]
gi|422351579|ref|ZP_16432391.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 117-3]
gi|422359019|ref|ZP_16439668.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 110-3]
gi|422364649|ref|ZP_16445160.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 153-1]
gi|422368984|ref|ZP_16449388.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 16-3]
gi|422378346|ref|ZP_16458569.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 60-1]
gi|422379167|ref|ZP_16459370.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 57-2]
gi|422765269|ref|ZP_16818996.1| tol-Pal system beta propeller protein TolB [Escherichia coli E1520]
gi|422775438|ref|ZP_16829094.1| tol-Pal system beta propeller protein TolB [Escherichia coli H120]
gi|422785337|ref|ZP_16838076.1| tol-Pal system beta propeller TolB [Escherichia coli H489]
gi|442592331|ref|ZP_21010309.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Escherichia
coli O10:K5(L):H4 str. ATCC 23506]
gi|26107108|gb|AAN79292.1|AE016757_196 TolB protein precursor [Escherichia coli CFT073]
gi|148020|gb|AAA24684.1| tolB [Escherichia coli]
gi|91071348|gb|ABE06229.1| periplasmic protein involved in the tonB-independent uptake of
group A colicins [Escherichia coli UTI89]
gi|115512055|gb|ABJ00130.1| TolB protein precursor [Escherichia coli APEC O1]
gi|170521158|gb|ACB19336.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
SMS-3-5]
gi|209911250|dbj|BAG76324.1| TolB protein [Escherichia coli SE11]
gi|226898507|gb|EEH84766.1| translocation protein TolB [Escherichia sp. 3_2_53FAA]
gi|227839045|gb|EEJ49511.1| TolB protein [Escherichia coli 83972]
gi|299879412|gb|EFI87623.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 196-1]
gi|300297002|gb|EFJ53387.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 185-1]
gi|300305362|gb|EFJ59882.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 200-1]
gi|300315607|gb|EFJ65391.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 175-1]
gi|300355806|gb|EFJ71676.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 198-1]
gi|300398434|gb|EFJ81972.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 69-1]
gi|300401220|gb|EFJ84758.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 84-1]
gi|300406696|gb|EFJ90234.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 45-1]
gi|300414464|gb|EFJ97774.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 115-1]
gi|300417843|gb|EFK01154.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 182-1]
gi|300453165|gb|EFK16785.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 116-1]
gi|300457198|gb|EFK20691.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 21-1]
gi|300462563|gb|EFK26056.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 187-1]
gi|300524512|gb|EFK45581.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 119-7]
gi|300531080|gb|EFK52142.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 107-1]
gi|300839540|gb|EFK67300.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 124-1]
gi|300845576|gb|EFK73336.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 78-1]
gi|301073871|gb|EFK88677.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 146-1]
gi|308118979|gb|EFO56241.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 145-7]
gi|315257659|gb|EFU37627.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 85-1]
gi|315287145|gb|EFU46557.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 110-3]
gi|315292654|gb|EFU52006.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 153-1]
gi|315299257|gb|EFU58509.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 16-3]
gi|323938279|gb|EGB34537.1| tol-Pal system beta propeller protein TolB [Escherichia coli E1520]
gi|323946994|gb|EGB43008.1| tol-Pal system beta propeller protein TolB [Escherichia coli H120]
gi|323963121|gb|EGB58691.1| tol-Pal system beta propeller TolB [Escherichia coli H489]
gi|324009566|gb|EGB78785.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 57-2]
gi|324010463|gb|EGB79682.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 60-1]
gi|324020352|gb|EGB89571.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 117-3]
gi|331055007|gb|EGI27016.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TA206]
gi|332104763|gb|EGJ08109.1| translocation protein TolB [Shigella sp. D9]
gi|338766987|gb|EGP21872.1| Protein tolB [Escherichia coli PCN033]
gi|341917257|gb|EGT66873.1| hypothetical protein C22711_0901 [Escherichia coli O104:H4 str.
C227-11]
gi|342929022|gb|EGU97744.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
MS 79-10]
gi|355419180|gb|AER83377.1| translocation protein TolB [Escherichia coli str. 'clone D i2']
gi|355424100|gb|AER88296.1| translocation protein TolB [Escherichia coli str. 'clone D i14']
gi|383474261|gb|EID66255.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
W26]
gi|384378223|gb|EIE36108.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
J53]
gi|384471606|gb|EIE55680.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
AI27]
gi|386151301|gb|EIH02590.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
5.0588]
gi|386156024|gb|EIH12373.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
97.0259]
gi|386164125|gb|EIH25911.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
1.2264]
gi|386192969|gb|EIH87277.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
JB1-95]
gi|386211595|gb|EII22051.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
9.0111]
gi|386222460|gb|EII44887.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
2.3916]
gi|408457274|gb|EKJ81072.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
AD30]
gi|441607990|emb|CCP95756.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Escherichia
coli O10:K5(L):H4 str. ATCC 23506]
Length = 431
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 246 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 302 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 347
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 348 VMVSSNG 354
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 262 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 307
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 308 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 335
>gi|417275429|ref|ZP_12062766.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3.2303]
gi|425271447|ref|ZP_18662947.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW15901]
gi|425282106|ref|ZP_18673217.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW00353]
gi|386242082|gb|EII78995.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3.2303]
gi|408197733|gb|EKI22985.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW15901]
gi|408205577|gb|EKI30437.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TW00353]
Length = 430
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSNG 353
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SP+G L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPEGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|223673843|pdb|2W8B|B Chain B, Crystal Structure Of Processed Tolb In Complex With Pal
gi|223673844|pdb|2W8B|D Chain D, Crystal Structure Of Processed Tolb In Complex With Pal
gi|223673845|pdb|2W8B|F Chain F, Crystal Structure Of Processed Tolb In Complex With Pal
Length = 409
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 279
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 280 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 325
Query: 557 LFTANLGA 564
+ ++ G
Sbjct: 326 VMVSSNGG 333
Score = 42.4 bits (98), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 184 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 239
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 240 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 285
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 286 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 313
>gi|89889850|ref|ZP_01201361.1| putative periplasmic component of the Tol biopolymer transport
system [Flavobacteria bacterium BBFL7]
gi|89518123|gb|EAS20779.1| putative periplasmic component of the Tol biopolymer transport
system [Flavobacteria bacterium BBFL7]
Length = 376
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 98/232 (42%), Gaps = 40/232 (17%)
Query: 382 PTEKHVIYTSTGPIFQS--ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNA 439
P +H+IY ST + + + + + S D ++ ++ E G +A
Sbjct: 127 PDNEHIIYASTHLAMDDCPDTPLKENGKYVWPIYDSYDIFVADLEGNITAQLTNEKGYDA 186
Query: 440 FPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
P+ SP G +VF S RSG L+ +D ++G +++Q+T D +SP G +
Sbjct: 187 EPTVSPQGDKIVFTSDRSGDLELYTMD-IDG---SNVKQITYELGYDGGAFFSPDGSQLI 242
Query: 500 FSSNR-HNPDNVEAF--------------SLYVIKPDGSGLRRIHVAGPEGSGDVDRERI 544
F S+R + ++ + LY+ DGS LR++ G
Sbjct: 243 FRSSRPKTEEEIKEYKDLLKVGLVQPTEMELYICNADGSDLRQLTQLGNANWSPF----- 297
Query: 545 NHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596
F DG+ +LF++N A P +LY++ DG+GL R+T
Sbjct: 298 ----FLPDGKRVLFSSNFEAERGFPF----------NLYMINTDGTGLERIT 335
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 23/152 (15%)
Query: 466 DAVNGEFNGDIR-QLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG 524
D + G+I QLT+ D P+ SP+GD I F+S+R LY + DGS
Sbjct: 164 DIFVADLEGNITAQLTNEKGYDAEPTVSPQGDKIVFTSDRSGD-----LELYTMDIDGSN 218
Query: 525 LRRI-HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQF-----QP 578
+++I + G +G FS DG L+F ++ E + + QP
Sbjct: 219 VKQITYELGYDGGA----------FFSPDGSQLIFRSSRPKTEEEIKEYKDLLKVGLVQP 268
Query: 579 YG-DLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+LY+ DGS LR+LT G N +P + P
Sbjct: 269 TEMELYICNADGSDLRQLTQLGNANWSPFFLP 300
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 84/184 (45%), Gaps = 22/184 (11%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSK----RWTLIKDRTAFYNSWSPTEKHVIYT 390
P+ SP G IVF D + + DGS + L D AF+ SP +I+
Sbjct: 188 PTVSPQGDKIVFTSDRSGDLELYTMDIDGSNVKQITYELGYDGGAFF---SPDGSQLIFR 244
Query: 391 STGPIFQSE-RATVQIARVSFQLDPSDDNNREEIPC-----DVKILTKEETGN-NAFPSC 443
S+ P + E + + +V + P++ E C D++ LT + GN N P
Sbjct: 245 SSRPKTEEEIKEYKDLLKVGL-VQPTE---MELYICNADGSDLRQLT--QLGNANWSPFF 298
Query: 444 SPDGKFLVFRSGRSGHKNL-FVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
PDGK ++F S + F L +N + G + ++T G D P +S G +AFSS
Sbjct: 299 LPDGKRVLFSSNFEAERGFPFNLYMINTDGTG-LERITHGETFDAFPVFSNNGKYLAFSS 357
Query: 503 NRHN 506
NR+N
Sbjct: 358 NRNN 361
>gi|432645174|ref|ZP_19880974.1| protein tolB [Escherichia coli KTE86]
gi|432942735|ref|ZP_20139951.1| protein tolB [Escherichia coli KTE183]
gi|433187531|ref|ZP_20371649.1| protein tolB [Escherichia coli KTE88]
gi|431183952|gb|ELE83725.1| protein tolB [Escherichia coli KTE86]
gi|431453400|gb|ELH33809.1| protein tolB [Escherichia coli KTE183]
gi|431708800|gb|ELJ73305.1| protein tolB [Escherichia coli KTE88]
Length = 430
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLGA 564
+ ++ G
Sbjct: 347 VMVSSNGG 354
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|429037095|ref|ZP_19102530.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0932]
gi|445022236|ref|ZP_21338154.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
7.1982]
gi|427305970|gb|EKW68531.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
96.0932]
gi|444647088|gb|ELW20072.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
7.1982]
Length = 430
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLGA 564
+ ++ G
Sbjct: 347 VMVSSNGG 354
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|428951415|ref|ZP_19023539.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
88.1042]
gi|427214173|gb|EKV83523.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
88.1042]
Length = 430
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLGA 564
+ ++ G
Sbjct: 347 VMVSSNGG 354
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|366158596|ref|ZP_09458458.1| translocation protein TolB [Escherichia sp. TW09308]
Length = 430
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLGA 564
+ ++ G
Sbjct: 347 VMVSSNGG 354
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|345888008|ref|ZP_08839136.1| tolB [Bilophila sp. 4_1_30]
gi|345041194|gb|EGW45380.1| tolB [Bilophila sp. 4_1_30]
Length = 471
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 98/244 (40%), Gaps = 58/244 (23%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDR---------TAFYNSWSPTEK 385
PS+S DG IVF+H + KS W + +R T +++P K
Sbjct: 245 PSWSLDGRFIVFSHMDD--------KSHALGVWDRLTNRVQRIRFPGNTVIGPTFTPGNK 296
Query: 386 HVIYTSTGP---------IFQSER----------------ATVQIARVSFQLDPSDDNNR 420
+ STG FQ ER A ++A S ++ +
Sbjct: 297 VAVSLSTGKNPDIFMLNHAFQKERTLEANGTINVSPTFDAAGTKMAFTSNRMGGPQIFMK 356
Query: 421 EEIPCDVKILTKEETGN-NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL 479
+ V +TK+ GN N PS SPDG + F S +FV D G +Q+
Sbjct: 357 DMASGSVSRVTKQ--GNYNTEPSMSPDGTLIAFSRLTSEGNRIFVQDLTTGT----EQQI 410
Query: 480 TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV 539
+ GP D +PS++P IAF+SNR P+ + Y+ G +++ P GSGD
Sbjct: 411 SFGPGNDVLPSFAPDSYFIAFTSNRSGPNQI-----YLTTRHGGDAKKV----PTGSGDA 461
Query: 540 DRER 543
R
Sbjct: 462 SFPR 465
>gi|283781895|ref|YP_003372650.1| WD40 domain-containing protein beta propeller [Pirellula staleyi
DSM 6068]
gi|283440348|gb|ADB18790.1| WD40 domain protein beta Propeller [Pirellula staleyi DSM 6068]
Length = 360
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 85/202 (42%), Gaps = 23/202 (11%)
Query: 337 FSPDGGLIVFNH---DF--------ELNAGIKIAKSDGSKRWT---LIKDRTAFYNSWSP 382
FSPDG IV+ D+ L+ G + S G R T D T + S
Sbjct: 59 FSPDGKQIVYQAQPLDYPFYQIFRQSLDGGRPLQISTGRGRTTCSYFSIDGTKILFASSH 118
Query: 383 TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK--EETGNNAF 440
+ + T Q E R ++ D E D KIL + E G +A
Sbjct: 119 LDPAIDATEAAERKQQEEDKKSGVRRRYKWDFDPYTEMFEADLDGKILKQLTNEKGYDAE 178
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
+ S DGK + F S R G +L+V+ N + G +RQLT+ P D P SP G + F
Sbjct: 179 GAYSKDGKLIAFCSDRDGDADLYVM---NSDGTG-VRQLTNAPGYDGGPFISPDGKWVVF 234
Query: 501 SSNRHNPDNVEAFSLYVIKPDG 522
S+R D ++ L+VI DG
Sbjct: 235 RSDRKEKDMLQ---LFVIGIDG 253
Score = 46.6 bits (109), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 26/134 (19%)
Query: 476 IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEG 535
++QLT+ D ++S G LIAF S+R + LYV+ DG+G+R++ A
Sbjct: 166 LKQLTNEKGYDAEGAYSKDGKLIAFCSDRDGDAD-----LYVMNSDGTGVRQLTNAPGYD 220
Query: 536 SGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL 595
G S DG+W++F ++ + + L+V+ +DG +L
Sbjct: 221 GGPF---------ISPDGKWVVFRSD------------RKEKDMLQLFVIGIDGKNETQL 259
Query: 596 TWNGYENGTPAWHP 609
T N P WHP
Sbjct: 260 TDTNGVNWGPYWHP 273
>gi|261278785|pdb|3IAX|A Chain A, The Crystal Structure Of The Tolb Box Of Colicin A In
Complex With Tolb Reveals Important Differences In The
Recruitment Of The Common Tolb Translocation Portal Used
By Group A Colicins
Length = 438
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSNG 353
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|218553267|ref|YP_002386180.1| translocation protein TolB [Escherichia coli IAI1]
gi|226705879|sp|B7M6B0.1|TOLB_ECO8A RecName: Full=Protein TolB; Flags: Precursor
gi|218360035|emb|CAQ97582.1| periplasmic protein [Escherichia coli IAI1]
Length = 430
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLGA 564
+ ++ G
Sbjct: 347 VMVSSNGG 354
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|12084602|pdb|1C5K|A Chain A, The Structure Of Tolb, An Essential Component Of The Tol-
Dependent Translocation System And Its Interactions With
The Translocation Domain Of Colicin E9
gi|114794794|pdb|2IVZ|A Chain A, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
gi|114794795|pdb|2IVZ|B Chain B, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
gi|114794796|pdb|2IVZ|C Chain C, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
gi|114794797|pdb|2IVZ|D Chain D, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
Length = 439
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 246 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 302 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 347
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 348 VMVSSNG 354
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 262 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 307
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 308 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 335
>gi|422970589|ref|ZP_16974101.1| protein tolB [Escherichia coli TA124]
gi|371600369|gb|EHN89144.1| protein tolB [Escherichia coli TA124]
Length = 430
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSNG 353
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|432371483|ref|ZP_19614538.1| protein tolB [Escherichia coli KTE11]
gi|430899645|gb|ELC21741.1| protein tolB [Escherichia coli KTE11]
Length = 430
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLGA 564
+ ++ G
Sbjct: 347 VMVSSNGG 354
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|417266847|ref|ZP_12054208.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3.3884]
gi|386229205|gb|EII56560.1| Tol-Pal system beta propeller repeat protein TolB [Escherichia coli
3.3884]
Length = 430
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSNG 353
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|145579533|pdb|2HQS|A Chain A, Crystal Structure Of TolbPAL COMPLEX
gi|145579535|pdb|2HQS|B Chain B, Crystal Structure Of TolbPAL COMPLEX
gi|145579537|pdb|2HQS|D Chain D, Crystal Structure Of TolbPAL COMPLEX
gi|145579539|pdb|2HQS|F Chain F, Crystal Structure Of TolbPAL COMPLEX
Length = 415
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 279
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 280 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 325
Query: 557 LFTANLGA 564
+ ++ G
Sbjct: 326 VMVSSNGG 333
Score = 42.0 bits (97), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 184 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 239
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 240 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 285
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 286 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 313
>gi|414574944|ref|ZP_11432152.1| tol-Pal system beta propeller repeat protein TolB [Shigella sonnei
3233-85]
gi|425114099|ref|ZP_18515922.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
8.0566]
gi|391288560|gb|EIQ47061.1| tol-Pal system beta propeller repeat protein TolB [Shigella sonnei
3233-85]
gi|408572298|gb|EKK48218.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
8.0566]
Length = 405
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 220 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 275
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 276 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 321
Query: 557 LFTANLGA 564
+ ++ G
Sbjct: 322 VMVSSNGG 329
Score = 42.4 bits (98), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 180 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 235
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 236 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 281
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 282 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 309
>gi|422791521|ref|ZP_16844224.1| tol-Pal system beta propeller TolB [Escherichia coli TA007]
gi|323972027|gb|EGB67247.1| tol-Pal system beta propeller TolB [Escherichia coli TA007]
Length = 431
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 246 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 302 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 347
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 348 VMVSSNG 354
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 262 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 307
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 308 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 335
>gi|223673842|pdb|2W8B|A Chain A, Crystal Structure Of Processed Tolb In Complex With Pal
Length = 409
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 279
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 280 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 325
Query: 557 LFTANLGA 564
+ ++ G
Sbjct: 326 VMVSSNGG 333
Score = 42.0 bits (97), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 184 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 239
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 240 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 285
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 286 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 313
>gi|218921786|emb|CAW30774.1| P46GA2.1A [Haemonchus contortus]
Length = 387
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 93/203 (45%), Gaps = 44/203 (21%)
Query: 435 TGNNAFPS---CSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR-QLTDGPWIDTMPS 490
T N+ + S SPDGK +V S +SG +L++ D NG ++ QLT D S
Sbjct: 154 TKNDVYDSEAFISPDGKKIVHTSKQSGDLDLWITD-----INGALKIQLTKAKGYDGGAS 208
Query: 491 WSPKGDLIAFSSNRHNPDNVEAFSLY--VIKPDGSGLRRIHVAGPEGSGDVDRERINHVC 548
+SP G+ I F ++R P + +Y ++K + +++ ++ + N VC
Sbjct: 209 FSPDGEKIVFHASR--PTGKDKIDIYDHLLKNNLVATKKMELS---------VMKANTVC 257
Query: 549 FSADGEWLLFTANLGAVMAEPVSWP----------------NQFQPYGDLYVVKLDGSGL 592
+ GE +LF G + P P N++ LY+V DG+GL
Sbjct: 258 GNVTGERILFNRERGVLDWTPYYHPDNKRIIFSSNMNSTKSNEYH----LYIVNEDGTGL 313
Query: 593 RRLTW-NGYENGTPAW-HPGNQL 613
R+T+ +GY N P + H G ++
Sbjct: 314 ERVTFGSGYFNAFPVFSHDGKKV 336
>gi|407778391|ref|ZP_11125655.1| translocation protein TolB [Nitratireductor pacificus pht-3B]
gi|407299762|gb|EKF18890.1| translocation protein TolB [Nitratireductor pacificus pht-3B]
Length = 437
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 13/115 (11%)
Query: 416 DDNNREEIPCDVKI--LTKEETGN--NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471
DD N D++ T+ T N + PS SPDG +VF S R G ++V+ A
Sbjct: 269 DDGNSNIFVMDLRSRNTTRLTTANAIDTSPSYSPDGNQVVFTSDRGGRAQIYVMSAA--- 325
Query: 472 FNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526
G+ ++++ G + P WSP+GDLIAF+ F + V++ DGSG R
Sbjct: 326 -GGNPQRISFGDGTYSTPVWSPRGDLIAFTKQTGG-----EFQIGVMRTDGSGER 374
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 35 HEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHD 94
++ LTDG SI +F + Q I ++S G P++Y + + + EL+ + P F
Sbjct: 195 NQRFLTDGRSIVLTPRFSPTR-QEITYMSYEGGQPQVYLLQLETGQRELVGNFPGMTFAP 253
Query: 95 RPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFI 154
R ++ + + S ++ DL++ TRLT +D SPS S G +
Sbjct: 254 RFSPGGQQIVMSLLRDDGN------SNIFVMDLRSRNTTRLTTANAIDTSPSYSPDGNQV 307
Query: 155 AVAS 158
S
Sbjct: 308 VFTS 311
>gi|417826626|ref|ZP_12473202.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri J1713]
gi|420318939|ref|ZP_14820795.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 2850-71]
gi|335576826|gb|EGM63064.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri J1713]
gi|391254232|gb|EIQ13394.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 2850-71]
Length = 430
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSNG 353
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|417680859|ref|ZP_12330241.1| tol-Pal system beta propeller repeat protein TolB [Shigella boydii
3594-74]
gi|420334854|ref|ZP_14836474.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-315]
gi|420351501|ref|ZP_14852691.1| tol-Pal system beta propeller repeat protein TolB [Shigella boydii
4444-74]
gi|421681397|ref|ZP_16121224.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 1485-80]
gi|332097645|gb|EGJ02620.1| tol-Pal system beta propeller repeat protein TolB [Shigella boydii
3594-74]
gi|391267445|gb|EIQ26381.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri K-315]
gi|391287729|gb|EIQ46245.1| tol-Pal system beta propeller repeat protein TolB [Shigella boydii
4444-74]
gi|404341603|gb|EJZ68008.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 1485-80]
Length = 405
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 220 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 275
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 276 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 321
Query: 557 LFTANLGA 564
+ ++ G
Sbjct: 322 VMVSSNGG 329
Score = 42.4 bits (98), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 180 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 235
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 236 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 281
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 282 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 309
>gi|219753666|emb|CAB60199.2| P100GA2 protein [Haemonchus contortus]
Length = 825
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 56/209 (26%)
Query: 435 TGNNAFPS---CSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR-QLTDGPWIDTMPS 490
T N+ + S SPDGK +V+ S +SG +L++ D NG ++ QLT D S
Sbjct: 171 TKNDVYDSEAFISPDGKKIVYTSKQSGDLDLWITD-----INGALKIQLTKKKGYDGGAS 225
Query: 491 WSPKGDLIAFSSNRHNPDNVEAFSLY--VIKPDGSGLRRIHVAGPEGSGDVDRERINHVC 548
+SP G I F ++R P E ++Y ++K D ++ + E N VC
Sbjct: 226 FSPDGKKIVFHASR--PKTNEEIAIYDRLLKNDLVATSKMELYVMEA---------NTVC 274
Query: 549 ----------------------FSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVK 586
+ D + ++F++N+ + PN++ LY+V
Sbjct: 275 GKGTDEKPLFKQPRGGLDWTPYYHTDNKRIIFSSNMNSTK------PNEYH----LYIVN 324
Query: 587 LDGSGLRRLTW-NGYENGTPAW-HPGNQL 613
DG+GL R+T+ NGY N P + H G ++
Sbjct: 325 EDGTGLERVTFGNGYFNAFPVFSHDGKKV 353
Score = 46.6 bits (109), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 24/145 (16%)
Query: 476 IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPE 534
++QLTD P + SP G IAF+S R L+ + DG+ L ++ G +
Sbjct: 570 VKQLTDEPGYNAEAVLSPDGKTIAFTSIRTGD-----LELWTMNTDGTNLHQVTKEYGYD 624
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG-------DLYVVKL 587
G FS DG+ L+F A+ E + + YG ++YVV +
Sbjct: 625 GG----------CFFSPDGKRLVFRASRPKTQKEKEKY-QKLLDYGLVEPTLTEIYVVDV 673
Query: 588 DGSGLRRLTWNGYENGTPAWHPGNQ 612
DG L+++T G + P + P N+
Sbjct: 674 DGKNLKQVTNFGVASWAPYYLPDNK 698
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 40/211 (18%)
Query: 427 VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID 486
VK LT +E G NA SPDGK + F S R+G L+ ++ +G ++ Q+T D
Sbjct: 570 VKQLT-DEPGYNAEAVLSPDGKTIAFTSIRTGDLELWTMN-TDGT---NLHQVTKEYGYD 624
Query: 487 TMPSWSPKGDLIAFSSNR-HNPDNVEAFS--------------LYVIKPDGSGLRRIHVA 531
+SP G + F ++R E + +YV+ DG L+++
Sbjct: 625 GGCFFSPDGKRLVFRASRPKTQKEKEKYQKLLDYGLVEPTLTEIYVVDVDGKNLKQVTNF 684
Query: 532 GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG 591
G + D + ++F++N QF + LYV+ DG+G
Sbjct: 685 GVASWAPY---------YLPDNKRIIFSSNYNMS-------AKQFGSFA-LYVINEDGTG 727
Query: 592 LRRLTW-NGYE-NGTPAWH-PGNQLDLGKLR 619
L R+T+ GY+ N P ++ GN+L G R
Sbjct: 728 LERVTFGEGYQFNAFPMFNRAGNKLVWGSSR 758
>gi|425235160|ref|ZP_18629126.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TT12B]
gi|408166515|gb|EKH94083.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
TT12B]
Length = 430
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSNG 353
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SGH L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGHSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|387505793|ref|YP_006158049.1| translocation protein TolB [Escherichia coli O55:H7 str. RM12579]
gi|419124988|ref|ZP_13669887.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC5C]
gi|419130490|ref|ZP_13675339.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC5D]
gi|209776394|gb|ACI86509.1| periplasmic protein TolB [Escherichia coli]
gi|374357787|gb|AEZ39494.1| translocation protein TolB [Escherichia coli O55:H7 str. RM12579]
gi|377979950|gb|EHV43221.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC5C]
gi|377980036|gb|EHV43305.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
DEC5D]
Length = 430
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSNG 353
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|406936452|gb|EKD70169.1| hypothetical protein ACD_46C00614G0005 [uncultured bacterium]
Length = 436
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 30/155 (19%)
Query: 379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN 438
+WSP K + Y S F++ RA + + +++ + L + G N
Sbjct: 210 AWSPNGKQLAYVS----FENRRAGIYL---------------QDVATGSRRLLSQFPGIN 250
Query: 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
P+ SPDG+ L +SG N++V+D + + ++Q+T +I+T PSWS G +
Sbjct: 251 GAPAWSPDGRKLAIVLSKSGAPNIYVMDIGSRQ----LKQVTKDFYINTEPSWSTDGKSL 306
Query: 499 AFSSNRH-NPDNVEAFSLYVIKPDGSGLRRIHVAG 532
F+SNR P+ LY I +G R+ G
Sbjct: 307 LFTSNRSGGPE------LYQINVNGGDASRLTYDG 335
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SP+GK L + S + +++ D G R L+ P I+ P+WSP G +A
Sbjct: 209 PAWSPNGKQLAYVSFENRRAGIYLQDVATGSR----RLLSQFPGINGAPAWSPDGRKLAI 264
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
++ N+ YV+ L+++ D +S DG+ LLFT+
Sbjct: 265 VLSKSGAPNI-----YVMDIGSRQLKQVTK---------DFYINTEPSWSTDGKSLLFTS 310
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
N P +LY + ++G RLT++G N
Sbjct: 311 NRSG-------GP-------ELYQINVNGGDASRLTYDGDYN 338
>gi|422834792|ref|ZP_16882852.1| tolB [Escherichia coli E101]
gi|371613976|gb|EHO02464.1| tolB [Escherichia coli E101]
Length = 430
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSNG 353
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|224826140|ref|ZP_03699243.1| Tol-Pal system beta propeller repeat protein TolB
[Pseudogulbenkiania ferrooxidans 2002]
gi|224601777|gb|EEG07957.1| Tol-Pal system beta propeller repeat protein TolB
[Pseudogulbenkiania ferrooxidans 2002]
Length = 428
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 111/261 (42%), Gaps = 53/261 (20%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A DG T+++ + + +WSP + Y S F++++ V +
Sbjct: 178 LQVADMDGRGAQTILRSKEPIISPAWSPDGGKIAYVS----FEAKKPVVWV--------- 224
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ + + + G+N+ P+ SPDG+ L SG ++V+DA NG G
Sbjct: 225 ------QNLVTGQRRIVANFKGSNSAPAWSPDGRQLAVVLTTSGTSQIYVIDA-NG---G 274
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
R++T IDT P+WSP G + F S+R + YV G RR+ +
Sbjct: 275 GARRVTHSNAIDTEPAWSPDGSQLYFVSDRAGGPQI-----YVQPVAGGSARRLSW---D 326
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR 594
GS +V + S DG L + G QF+ VV+ SG R
Sbjct: 327 GSYNVSPK------VSPDGRTLSYIRRQGG----------QFR-----VVVQDLASGDNR 365
Query: 595 LTWNGYENGTPAWHPGNQLDL 615
+ +G N P++ P +++ L
Sbjct: 366 VLSSGAYNERPSFAPNSRMVL 386
>gi|195939092|ref|ZP_03084474.1| translocation protein TolB, partial [Escherichia coli O157:H7 str.
EC4024]
Length = 389
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSNG 353
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|337285743|ref|YP_004625216.1| TolB domain-containing protein [Thermodesulfatator indicus DSM
15286]
gi|335358571|gb|AEH44252.1| TolB domain-containing protein [Thermodesulfatator indicus DSM
15286]
Length = 410
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 31/190 (16%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAK-SDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTG 393
P SPDG + F + + I++ + G +R +W P K ++ T
Sbjct: 190 PKLSPDGRQVAFVYYENHRSSIQVIDLATGKRRIICQYPGLNASPAWHPDGKKLVVT--- 246
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453
S+ T+ + + D N + +K LT E G N S SPDGK+L F
Sbjct: 247 ---LSKDGTIDLYLI-------DLNGK-----ILKRLTHGE-GINTGASFSPDGKYLAFV 290
Query: 454 SGRSGHKNLFVLD-AVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA 512
S R+G ++++D A G +R+LT +T P WSP GD I ++S +
Sbjct: 291 SDRTGPPQIYIMDLATRG-----VRRLTFEGSYNTSPDWSPTGDRIVYASLKGG-----V 340
Query: 513 FSLYVIKPDG 522
FSL+ I P+G
Sbjct: 341 FSLFTIDPEG 350
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 34/170 (20%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ + F + ++ V+D G+ R + P ++ P+W P G +
Sbjct: 190 PKLSPDGRQVAFVYYENHRSSIQVIDLATGKR----RIICQYPGLNASPAWHPDGKKLVV 245
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINH-VCFSADGEWLLFT 559
+ ++ LY+I +G L+R+ E IN FS DG++L F
Sbjct: 246 TLSKDG-----TIDLYLIDLNGKILKRL----------THGEGINTGASFSPDGKYLAFV 290
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
++ + P Q +Y++ L G+RRLT+ G N +P W P
Sbjct: 291 SDR--------TGPPQ------IYIMDLATRGVRRLTFEGSYNTSPDWSP 326
>gi|402567481|ref|YP_006616826.1| TolB protein [Burkholderia cepacia GG4]
gi|402248678|gb|AFQ49132.1| TolB protein [Burkholderia cepacia GG4]
Length = 431
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 24/150 (16%)
Query: 356 IKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG + R L SWSP+ V Y S F+ ++ V I
Sbjct: 178 LQISDSDGQNARIALSSTEPIISPSWSPSGTKVAYVS----FERKKPIVYI--------- 224
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++P + + ++ GNN+ P+ SPD L SG+ ++ +++ G
Sbjct: 225 ------HDLPTGRRYIVSDQKGNNSAPAWSPDSNTLAVALSLSGNTQIYTVNST----GG 274
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
+R+LT IDT P +SP G I F+S+R
Sbjct: 275 GLRRLTQSGSIDTEPFYSPDGRWIYFTSDR 304
>gi|385787758|ref|YP_005818867.1| translocation protein TolB [Erwinia sp. Ejp617]
gi|310767030|gb|ADP11980.1| translocation protein TolB [Erwinia sp. Ejp617]
Length = 430
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N PS SPDG L F ++G NL+V+D +G+ IRQ+TDG + T P+W P
Sbjct: 245 HNGAPSFSPDGSKLAFALSKTGSLNLYVMDVGSGQ----IRQITDGRYNSTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS-GDVDRERINHVCFSAD 552
+A++S D +Y I +G +RI G + DV + + V S +
Sbjct: 301 SLAYTS-----DQAGRPQIYKIGVNGGTAQRITWDGAQNQDADVSSDGKSMVMISTN 352
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 78/181 (43%), Gaps = 34/181 (18%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD-GSKRWTLIKDRTAFYNS----WSPT 383
R NG+ PSFSPDG + F + + D GS + I D YNS W P
Sbjct: 244 RHNGA-PSFSPDGSKLAFA--LSKTGSLNLYVMDVGSGQIRQITD--GRYNSTEPTWFPD 298
Query: 384 EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSC 443
+ + YTS Q+ R QI ++ + + I D N
Sbjct: 299 SQSLAYTSD----QAGRP--QIYKIGV-----NGGTAQRITWD--------GAQNQDADV 339
Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503
S DGK +V S SG +++ D V G ++QLTD ++D PS +P G ++ +SS
Sbjct: 340 SSDGKSMVMISTNSGAQHVARQDLVTGA----VQQLTD-TFLDETPSLAPNGTMVIYSST 394
Query: 504 R 504
+
Sbjct: 395 Q 395
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG + + + SG L + NG IRQ+ P + PS+SP G +AF
Sbjct: 205 PAWSPDGSKVAYVTFESGKSALVIQTLANGA----IRQVASFPRHNGAPSFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I +G R + D + L +T+
Sbjct: 261 ALSKTG-----SLNLYVMDVGSGQIRQIT----DG-----RYNSTEPTWFPDSQSLAYTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y + ++G +R+TW+G +N
Sbjct: 307 DQAG------------RP--QIYKIGVNGGTAQRITWDGAQN 334
>gi|417671454|ref|ZP_12320945.1| tol-Pal system beta propeller repeat protein TolB [Shigella
dysenteriae 155-74]
gi|420345960|ref|ZP_14847387.1| tol-Pal system beta propeller repeat protein TolB [Shigella boydii
965-58]
gi|332096497|gb|EGJ01493.1| tol-Pal system beta propeller repeat protein TolB [Shigella
dysenteriae 155-74]
gi|391275241|gb|EIQ34033.1| tol-Pal system beta propeller repeat protein TolB [Shigella boydii
965-58]
Length = 405
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 220 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 275
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 276 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 321
Query: 557 LFTANLGA 564
+ ++ G
Sbjct: 322 VMVSSNGG 329
Score = 42.0 bits (97), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 180 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 235
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 236 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 281
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 282 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 309
>gi|156743096|ref|YP_001433225.1| peptidase S41 [Roseiflexus castenholzii DSM 13941]
gi|156234424|gb|ABU59207.1| peptidase S41 [Roseiflexus castenholzii DSM 13941]
Length = 1090
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 80/182 (43%), Gaps = 26/182 (14%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
N+ P SPDG + + S R+G +++VL +NG G++R++T + WSP G
Sbjct: 50 ANHMLPRWSPDGSAIAYTSSRTGQGDVYVL-PLNG---GEVRRITYHEAQSAVECWSPDG 105
Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW 555
I F+S R + ++Y I G R +A P ER+ V S G W
Sbjct: 106 AAIYFTSQRER----QGAAIYRIAASGGTPVR-WIAQPY-------ERLGTVAVSPCGRW 153
Query: 556 LLFTANLGAVMAEPVSWPNQFQPYG--DLYVVK--LDGSGLRRLTWNGYENGTPAWHPGN 611
L F+ + + W PYG +L++V D +L+ N P W P +
Sbjct: 154 LAFS------LMRDLWWRRGPNPYGGAELWLVSNAPDADDFFQLSDAPGMNYCPMWSPDS 207
Query: 612 QL 613
QL
Sbjct: 208 QL 209
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 92/229 (40%), Gaps = 24/229 (10%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDG--SKRWTLIKDRTAFYNSWSPTEKHVIYTST 392
P +SPD LI F D + + + +A +G ++R T D + S S + + +
Sbjct: 201 PMWSPDSQLIFFVSDRDGSENLWVAPREGGVAERITAFTDGRLLWPSISADGRMIAFERD 260
Query: 393 GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452
I+ + A+ RV Q+ + + P V+ T++ G A SPDGK + F
Sbjct: 261 FGIWTLDLASGATTRVPIQVR----QDTKVTPVRVQTYTRD-AGELAL---SPDGKKVAF 312
Query: 453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA 512
+ + + +G +++ + D+ +WSP + + S+RH + V
Sbjct: 313 TVRGKIFADFAEKETERDQRHGPAYRISHTAFRDSDIAWSPDSRRLVYVSDRHGDEEVYC 372
Query: 513 FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN 561
+ +A E +R + CFS DG W+ + +
Sbjct: 373 YDF--------------LARSETRLTFGAKRKSAPCFSPDGRWIAYASG 407
Score = 45.4 bits (106), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 89/244 (36%), Gaps = 43/244 (17%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIY 389
N P +SPDG I + + + +G + R + + WSP + +
Sbjct: 51 NHMLPRWSPDGSAIAYTSSRTGQGDVYVLPLNGGEVRRITYHEAQSAVECWSPDGAAIYF 110
Query: 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF 449
TS Q ER I R++ P E G A SP G++
Sbjct: 111 TS-----QRERQGAAIYRIAAS---------GGTPVRWIAQPYERLGTVA---VSPCGRW 153
Query: 450 LVFRSGRS----------GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
L F R G L+++ N D QL+D P ++ P WSP LI
Sbjct: 154 LAFSLMRDLWWRRGPNPYGGAELWLVS--NAPDADDFFQLSDAPGMNYCPMWSPDSQLIF 211
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559
F S+R +N L+V +G RI A +G R+ SADG + F
Sbjct: 212 FVSDRDGSEN-----LWVAPREGGVAERI-TAFTDG-------RLLWPSISADGRMIAFE 258
Query: 560 ANLG 563
+ G
Sbjct: 259 RDFG 262
Score = 43.1 bits (100), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 34/161 (21%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS P G + F +++++D G+ +LT P +P WSP G IA+
Sbjct: 15 PSIDPAGSRIAFVYA----GDIWLVDVSGGQAE----RLTAHPANHMLPRWSPDGSAIAY 66
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+S+R +V YV+ +G +RRI + + + C+S DG + FT+
Sbjct: 67 TSSRTGQGDV-----YVLPLNGGEVRRITYHEAQSAVE---------CWSPDGAAIYFTS 112
Query: 561 N----------LGAVMAEPVSWPNQFQPYGDLYVVKLDGSG 591
+ A PV W QPY L V + G
Sbjct: 113 QRERQGAAIYRIAASGGTPVRWIA--QPYERLGTVAVSPCG 151
>gi|429768367|ref|ZP_19300529.1| Tol-Pal system beta propeller repeat protein TolB [Brevundimonas
diminuta 470-4]
gi|429189240|gb|EKY30081.1| Tol-Pal system beta propeller repeat protein TolB [Brevundimonas
diminuta 470-4]
Length = 460
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 33/177 (18%)
Query: 433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
E G P S DG + F R G+ +++V++ + + + +LT P IDT PS+S
Sbjct: 253 EFDGQVLAPRFSNDGTKMAFSIIRHGNTDVYVMNLRSRQLS----RLTTDPGIDTSPSFS 308
Query: 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD 552
P G+ I F+S+R + LY ++ DGSG R I G +S
Sbjct: 309 PDGNQIVFTSDRSG-----SARLYTMRADGSGQRPISRGG---------GIYTAPAWSPR 354
Query: 553 GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G+ + FT G +F + V+K DG+G R L+ + +E G P+W P
Sbjct: 355 GDLIAFTKQQGG----------RFH----IGVMKSDGTGERILSSSYFEEG-PSWAP 396
>gi|417332280|ref|ZP_12116227.1| TolB protein, partial [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
gi|417389141|ref|ZP_12153039.1| TolB protein, partial [Salmonella enterica subsp. enterica serovar
Minnesota str. A4-603]
gi|353582342|gb|EHC43012.1| TolB protein, partial [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
gi|353622942|gb|EHC72354.1| TolB protein, partial [Salmonella enterica subsp. enterica serovar
Minnesota str. A4-603]
Length = 185
Score = 56.2 bits (134), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 18/124 (14%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497
N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 1 NGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDSQT 56
Query: 498 IAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL 557
+AF+S++ V Y + +G +RI EGS + D + S+DG++++
Sbjct: 57 LAFTSDQAGRPQV-----YKMNINGGAAQRITW---EGSQNQDAD------VSSDGKFMV 102
Query: 558 FTAN 561
++
Sbjct: 103 MVSS 106
>gi|433772710|ref|YP_007303177.1| tol-pal system beta propeller repeat protein TolB [Mesorhizobium
australicum WSM2073]
gi|433664725|gb|AGB43801.1| tol-pal system beta propeller repeat protein TolB [Mesorhizobium
australicum WSM2073]
Length = 436
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 79/174 (45%), Gaps = 34/174 (19%)
Query: 441 PSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
P SPDG+ ++ R G+ N+F +D + +LT+ IDT PS+SP G +
Sbjct: 254 PRFSPDGQKVIMSLLRDDGNSNIFAMDLRSRSTT----RLTNSTAIDTSPSYSPDGSKVV 309
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559
F+S+R + YV+ DGSG RI S V +S G+ + FT
Sbjct: 310 FTSDRGGRAQI-----YVMGADGSGQTRISFGDGVYSTPV---------WSPRGDLIAFT 355
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G +FQ + V+K DGSG R L+ +G++ P W P ++
Sbjct: 356 KQSGG----------EFQ----IGVMKTDGSGERILS-SGFQQEGPTWAPNGRV 394
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 13/115 (11%)
Query: 416 DDNNREEIPCDVKILTKEETGN----NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471
DD N D++ + N + PS SPDG +VF S R G ++V+ A +
Sbjct: 270 DDGNSNIFAMDLRSRSTTRLTNSTAIDTSPSYSPDGSKVVFTSDRGGRAQIYVMGA---D 326
Query: 472 FNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526
+G R ++ G + + P WSP+GDLIAF+ F + V+K DGSG R
Sbjct: 327 GSGQTR-ISFGDGVYSTPVWSPRGDLIAFTKQSGG-----EFQIGVMKTDGSGER 375
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 39 LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA 98
L+DG SI +F + Q I ++S SG PR+Y + + + EL+ + P F R
Sbjct: 200 LSDGRSIVLTPRFSPNR-QEITYMSYESGQPRVYLLQIETGQRELVGNFPGMTFAPRFSP 258
Query: 99 RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVAS 158
K+ + + S +++ DL++ TRLT +D SPS S G + S
Sbjct: 259 DGQKVIMSLLRDDGN------SNIFAMDLRSRSTTRLTNSTAIDTSPSYSPDGSKVVFTS 312
>gi|218921788|emb|CAW30775.1| P46GA2.1B [Haemonchus contortus]
Length = 354
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 44/203 (21%)
Query: 435 TGNNAFPS---CSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR-QLTDGPWIDTMPS 490
T N + S SPDGK +V+ +SG +L++ D NG ++ QLT+ D S
Sbjct: 121 TKNKVYDSEAFISPDGKKIVYTRKQSGDLDLWITD-----INGALKIQLTNTKGYDGGAS 175
Query: 491 WSPKGDLIAFSSNRHNPDNVEAFSLY--VIKPDGSGLRRIHVAGPEGSGDVDRERINHVC 548
+SP G+ I F ++R P + +Y ++K D ++ + + N VC
Sbjct: 176 FSPDGEKIVFHASR--PTTKDKIDIYDHLLKNDLVATNKMELY---------VMKANTVC 224
Query: 549 FSADGEWLLFTANLGAVMAEPVSWP----------------NQFQPYGDLYVVKLDGSGL 592
GE +LF GA+ P P N++ LY+V DG+GL
Sbjct: 225 GDGTGERILFNRARGALDWTPYYHPDNKRIIFSSNMNSTKSNEYH----LYIVNEDGTGL 280
Query: 593 RRLTW-NGYENGTPAW-HPGNQL 613
R+T+ +GY N P + H G ++
Sbjct: 281 ERVTFGSGYFNAFPVFSHDGKKV 303
>gi|420367147|ref|ZP_14867951.1| tol-Pal system beta propeller repeat protein TolB, partial
[Shigella flexneri 1235-66]
gi|391323543|gb|EIQ80187.1| tol-Pal system beta propeller repeat protein TolB, partial
[Shigella flexneri 1235-66]
Length = 427
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSNG 353
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|268316197|ref|YP_003289916.1| peptidase S9B dipeptidylpeptidase IV domain-containing protein
[Rhodothermus marinus DSM 4252]
gi|262333731|gb|ACY47528.1| peptidase S9B dipeptidylpeptidase IV domain protein [Rhodothermus
marinus DSM 4252]
Length = 1028
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 33/179 (18%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHK-NLFVLDAVNGEFNGDIRQLTDGP------WIDTMPS 490
N P+ SPDG+++ F S R +LFV DA G+ + P +I++ S
Sbjct: 297 NLAPALSPDGRYVAFLSERDLFTIDLFVADAETGKVLRRLSSSASDPHFDAIRFINSSGS 356
Query: 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS 550
WSP G AF + + + ++L G RRI V EG G I+++ +S
Sbjct: 357 WSPDGQRFAFITFAQGNNEIAIWNL----RKGKLERRIAV---EGVG-----AIHNLAWS 404
Query: 551 ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
DG + F+ G + DLY++ L+ + +R+LT + Y + PAW P
Sbjct: 405 PDGRTIAFSGLSGGI--------------SDLYLLDLETNQVRKLTDDRYADLQPAWSP 449
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503
SPDG+ + F G +L++LD + +R+LTD + D P+WSP G IAF S+
Sbjct: 404 SPDGRTIAFSGLSGGISDLYLLDLETNQ----VRKLTDDRYADLQPAWSPDGRTIAFVSD 459
Query: 504 RHNPDNVE 511
R PD +
Sbjct: 460 R-GPDGTD 466
>gi|149915620|ref|ZP_01904146.1| translocation protein TolB precursor [Roseobacter sp. AzwK-3b]
gi|149810512|gb|EDM70355.1| translocation protein TolB precursor [Roseobacter sp. AzwK-3b]
Length = 440
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 128/326 (39%), Gaps = 60/326 (18%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA 354
Y R GE+ S + ++ P +K L ++ +G+ S+ D IV F +
Sbjct: 158 YSRITGEAPYFDSRVVYVAETGPKDQRIKRLAIMDYDGANVSYLTDSASIVLAPRFSPDG 217
Query: 355 GIKIAKS--DGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412
+ S G R +++ +A ++ V+ G + + R RV + L
Sbjct: 218 RQVLYTSYESGFPRIYVLQVGSA--------QRRVLEQQDGTMSFAPRFAPDGRRVVYSL 269
Query: 413 DPSDDNNREEIPCDVKILTKEETGN----NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV 468
S N + D+ T N PS SPDG +VF S RSG L+++ +
Sbjct: 270 --SSGGNTDLYMMDIGSGTSTRLTNAPSIETAPSFSPDGSRIVFESDRSGSPQLYIMPSA 327
Query: 469 NGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
GE ++++ G P WSP+GDLIAF+ F + VI+ DGS R +
Sbjct: 328 GGE----AQRISFGQGRYGTPVWSPRGDLIAFTKQSKG-----RFHIGVIRTDGSEERLL 378
Query: 529 HVA----GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYV 584
+ GP +S +G ++FT Q LY
Sbjct: 379 TASFLDEGP--------------TWSPNGRVIMFTRETQGA-----------QGSASLYS 413
Query: 585 VKLDGSGLRRL-TWNGYENGTPAWHP 609
V + G LR++ T G + P+W P
Sbjct: 414 VDISGRNLRKVPTEAGGSD--PSWSP 437
>gi|308186083|ref|YP_003930214.1| protein tolB [Pantoea vagans C9-1]
gi|308056593|gb|ADO08765.1| Protein tolB precursor [Pantoea vagans C9-1]
Length = 431
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ RQ+TDG + T P+W P
Sbjct: 246 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----TRQVTDGRYNSTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS-GDVDRERINHVCFSADG 553
+A++S D A +Y + +G +RI G + DV + + V S G
Sbjct: 302 TLAYTS-----DQAGAPQIYKVGLNGGTPQRITWEGGQNQDADVATDGKSMVMISTSG 354
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG + + + SG L V NG IRQ+ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKVAYVTFESGKSALVVQTLSNGA----IRQVASYPRHNGAPAFSPDGSKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ R++ R + D + L +T+
Sbjct: 262 ALSKTG-----SLNLYVMDLASGQTRQVTDG---------RYNSTEPTWFPDSQTLAYTS 307
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +Y V L+G +R+TW G +N
Sbjct: 308 DQAGAP--------------QIYKVGLNGGTPQRITWEGGQN 335
>gi|387872006|ref|YP_005803383.1| protein tolB [Erwinia pyrifoliae DSM 12163]
gi|283479096|emb|CAY75012.1| Protein tolB precursor [Erwinia pyrifoliae DSM 12163]
Length = 439
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N PS SPDG L F ++G NL+V+D +G+ IRQ+TDG + T P+W P
Sbjct: 254 HNGAPSFSPDGSKLAFALSKTGSLNLYVMDVGSGQ----IRQITDGRYNSTEPTWFPDSQ 309
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS-GDVDRERINHVCFSAD 552
+A++S D +Y I +G +RI G + DV + + V S +
Sbjct: 310 SLAYTS-----DQAGRPQIYKIGVNGGTAQRITWDGAQNQDADVSSDGKSMVMISTN 361
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 78/181 (43%), Gaps = 34/181 (18%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD-GSKRWTLIKDRTAFYNS----WSPT 383
R NG+ PSFSPDG + F + + D GS + I D YNS W P
Sbjct: 253 RHNGA-PSFSPDGSKLAFA--LSKTGSLNLYVMDVGSGQIRQITD--GRYNSTEPTWFPD 307
Query: 384 EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSC 443
+ + YTS Q+ R QI ++ + + I D N
Sbjct: 308 SQSLAYTSD----QAGRP--QIYKIGV-----NGGTAQRITWD--------GAQNQDADV 348
Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503
S DGK +V S SG +++ D V G ++QLTD ++D PS +P G ++ +SS
Sbjct: 349 SSDGKSMVMISTNSGAQHVARQDLVTGA----VQQLTD-TFLDETPSLAPNGTMVIYSST 403
Query: 504 R 504
+
Sbjct: 404 Q 404
Score = 42.4 bits (98), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG + + + SG L + NG IRQ+ P + PS+SP G +AF
Sbjct: 214 PAWSPDGSKVAYVTFESGKSALVIQTLANGA----IRQVASFPRHNGAPSFSPDGSKLAF 269
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I +G R + D + L +T+
Sbjct: 270 ALSKTG-----SLNLYVMDVGSGQIRQIT----DG-----RYNSTEPTWFPDSQSLAYTS 315
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y + ++G +R+TW+G +N
Sbjct: 316 DQAG------------RP--QIYKIGVNGGTAQRITWDGAQN 343
>gi|347538070|ref|YP_004845494.1| translocation protein TolB [Pseudogulbenkiania sp. NH8B]
gi|345641247|dbj|BAK75080.1| translocation protein TolB [Pseudogulbenkiania sp. NH8B]
Length = 428
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 111/261 (42%), Gaps = 53/261 (20%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A DG T+++ + + +WSP + Y S F++++ V +
Sbjct: 178 LQVADMDGRGAQTILRSKEPIISPAWSPDGGKIAYVS----FEAKKPVVWV--------- 224
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ + + + G+N+ P+ SPDG+ L SG ++V+DA NG G
Sbjct: 225 ------QNLVTGQRRIVANFKGSNSAPAWSPDGRQLAVVLTTSGTSQIYVIDA-NG---G 274
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
R++T IDT P+WSP G + F S+R + YV G RR+ +
Sbjct: 275 GARRVTHSNAIDTEPAWSPDGSQLYFVSDRAGGPQI-----YVQPVAGGSARRLSW---D 326
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR 594
GS +V + S DG L + G QF+ VV+ SG R
Sbjct: 327 GSYNVSPK------VSPDGRTLSYIRRQG----------GQFR-----VVVQDLASGDNR 365
Query: 595 LTWNGYENGTPAWHPGNQLDL 615
+ +G N P++ P +++ L
Sbjct: 366 VLSSGAYNERPSFAPNSRMVL 386
>gi|302381977|ref|YP_003817800.1| Tol-Pal system beta propeller repeat protein TolB [Brevundimonas
subvibrioides ATCC 15264]
gi|302192605|gb|ADL00177.1| Tol-Pal system beta propeller repeat protein TolB [Brevundimonas
subvibrioides ATCC 15264]
Length = 466
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 79/177 (44%), Gaps = 33/177 (18%)
Query: 433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
E G P SPDG + F R G+ +++V++ + + +LT P IDT PS+S
Sbjct: 260 EFDGQALAPRYSPDGTKVAFSIIRGGNTDVYVMNLRTRQLS----RLTSDPGIDTSPSFS 315
Query: 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD 552
P I F+S+R LYV+ DGS R I G GS +S
Sbjct: 316 PDASRIVFNSDRTGTPR-----LYVMNADGSNQRPISRGG--GS-------YTAPAWSPR 361
Query: 553 GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G+ + FT + G QF + V+ DGSG R L+ + +E G P+W P
Sbjct: 362 GDLIAFTKSGGG----------QF----GIGVMATDGSGERMLSRSYFEEG-PSWAP 403
>gi|259909070|ref|YP_002649426.1| translocation protein TolB [Erwinia pyrifoliae Ep1/96]
gi|224964692|emb|CAX56209.1| Protein TolB (Translocation of group A colicins) [Erwinia
pyrifoliae Ep1/96]
Length = 430
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N PS SPDG L F ++G NL+V+D +G+ IRQ+TDG + T P+W P
Sbjct: 245 HNGAPSFSPDGSKLAFALSKTGSLNLYVMDVGSGQ----IRQITDGRYNSTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS-GDVDRERINHVCFSAD 552
+A++S D +Y I +G +RI G + DV + + V S +
Sbjct: 301 SLAYTS-----DQAGRPQIYKIGVNGGTAQRITWDGAQNQDADVSSDGKSMVMISTN 352
Score = 43.5 bits (101), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 78/181 (43%), Gaps = 34/181 (18%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD-GSKRWTLIKDRTAFYNS----WSPT 383
R NG+ PSFSPDG + F + + D GS + I D YNS W P
Sbjct: 244 RHNGA-PSFSPDGSKLAFA--LSKTGSLNLYVMDVGSGQIRQITD--GRYNSTEPTWFPD 298
Query: 384 EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSC 443
+ + YTS Q+ R QI ++ + + I D N
Sbjct: 299 SQSLAYTSD----QAGRP--QIYKIGV-----NGGTAQRITWD--------GAQNQDADV 339
Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503
S DGK +V S SG +++ D V G ++QLTD ++D PS +P G ++ +SS
Sbjct: 340 SSDGKSMVMISTNSGAQHVARQDLVTGA----VQQLTD-TFLDETPSLAPNGTMVIYSST 394
Query: 504 R 504
+
Sbjct: 395 Q 395
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG + + + SG L + NG IRQ+ P + PS+SP G +AF
Sbjct: 205 PAWSPDGSKVAYVTFESGKSALVIQTLANGA----IRQVASFPRHNGAPSFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R+I +G R + D + L +T+
Sbjct: 261 ALSKTG-----SLNLYVMDVGSGQIRQIT----DG-----RYNSTEPTWFPDSQSLAYTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y + ++G +R+TW+G +N
Sbjct: 307 DQAG------------RP--QIYKIGVNGGTAQRITWDGAQN 334
>gi|443243686|ref|YP_007376911.1| putative periplasmic component of the Tol biopolymer transport
system [Nonlabens dokdonensis DSW-6]
gi|442801085|gb|AGC76890.1| putative periplasmic component of the Tol biopolymer transport
system [Nonlabens dokdonensis DSW-6]
Length = 369
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 40/232 (17%)
Query: 382 PTEKHVIYTSTGPIFQS--ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNA 439
P +H+IY ST + + + + + S D ++ ++ +E G +A
Sbjct: 120 PDNEHIIYASTHLKMDDCPDTPLKENGKYVWPIYDSYDIFVADLDGNITAQLTDEKGYDA 179
Query: 440 FPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
P+ SP G +VF S RSG L+ ++ ++G D++Q+T D +SP G +
Sbjct: 180 EPTVSPQGDKIVFTSDRSGDLELYTMN-IDG---SDVKQITYELGYDGGAFFSPDGSQLI 235
Query: 500 FSSNRHNPDNV---------------EAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERI 544
F S+R + LY+ DGS LR++ G
Sbjct: 236 FRSSRPKTETEIKEYKDLLAVGLVQPTEMELYICNADGSDLRQLTQLGNANWSPF----- 290
Query: 545 NHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596
F DG+ +LF++N A P +LY++ DG+GL R+T
Sbjct: 291 ----FLPDGKRVLFSSNFEAERGFPF----------NLYMINTDGTGLERIT 328
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 70/152 (46%), Gaps = 23/152 (15%)
Query: 466 DAVNGEFNGDIR-QLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG 524
D + +G+I QLTD D P+ SP+GD I F+S+R LY + DGS
Sbjct: 157 DIFVADLDGNITAQLTDEKGYDAEPTVSPQGDKIVFTSDRSGD-----LELYTMNIDGSD 211
Query: 525 LRRI-HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQF-----QP 578
+++I + G +G FS DG L+F ++ E + + QP
Sbjct: 212 VKQITYELGYDGG----------AFFSPDGSQLIFRSSRPKTETEIKEYKDLLAVGLVQP 261
Query: 579 YG-DLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+LY+ DGS LR+LT G N +P + P
Sbjct: 262 TEMELYICNADGSDLRQLTQLGNANWSPFFLP 293
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 20/183 (10%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSK----RWTLIKDRTAFYNSWSPTEKHVIYT 390
P+ SP G IVF D + + DGS + L D AF+ SP +I+
Sbjct: 181 PTVSPQGDKIVFTSDRSGDLELYTMNIDGSDVKQITYELGYDGGAFF---SPDGSQLIFR 237
Query: 391 STGPIFQSERATVQIARVSFQLDPSDDNNREEIPC-----DVKILTKEETGN-NAFPSCS 444
S+ P ++E + + P++ E C D++ LT + GN N P
Sbjct: 238 SSRPKTETEIKEYKDLLAVGLVQPTE---MELYICNADGSDLRQLT--QLGNANWSPFFL 292
Query: 445 PDGKFLVFRSGRSGHKNL-FVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503
PDGK ++F S + F L +N + G + ++T G D P +S G +AFSSN
Sbjct: 293 PDGKRVLFSSNFEAERGFPFNLYMINTDGTG-LERITHGETFDAFPVFSNNGKYLAFSSN 351
Query: 504 RHN 506
R+N
Sbjct: 352 RNN 354
>gi|51473498|ref|YP_067255.1| translocation protein TolB [Rickettsia typhi str. Wilmington]
gi|383752272|ref|YP_005427372.1| translocation protein TolB [Rickettsia typhi str. TH1527]
gi|383843108|ref|YP_005423611.1| translocation protein TolB [Rickettsia typhi str. B9991CWPP]
gi|67461946|sp|Q68X69.1|TOLB_RICTY RecName: Full=Protein TolB; Flags: Precursor
gi|51459810|gb|AAU03773.1| TolB protein precursor [Rickettsia typhi str. Wilmington]
gi|380758915|gb|AFE54150.1| translocation protein TolB [Rickettsia typhi str. TH1527]
gi|380759755|gb|AFE54989.1| translocation protein TolB [Rickettsia typhi str. B9991CWPP]
Length = 443
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 86/176 (48%), Gaps = 31/176 (17%)
Query: 422 EIPCDVKILTK--EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL 479
EI K L K + G N PS SPDGK +V+ S ++G L+++++ +G D+R++
Sbjct: 271 EIDLATKQLNKLTDGFGINTSPSYSPDGKKIVYNSDKNGVPQLYIMNS-DGS---DVRRI 326
Query: 480 TDGPWIDTMPSWSPKGDLIAFSS-NRHNPDNVEAFSLYVIKP---DGSGLRRIHVAGPEG 535
+ G PSWSP+GD IAF+ RH+ + + F++ ++K D RI +G
Sbjct: 327 SFGGGSYASPSWSPRGDYIAFTKITRHDGEKI--FNIGIMKAYPQDHENSERIITSG--- 381
Query: 536 SGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG 591
+ C+S +G ++F+ WP++ + G + +D +G
Sbjct: 382 ------YLVESPCWSPNGRVIMFSK----------GWPSRAKAPGKNKIFTIDLTG 421
>gi|34495564|ref|NP_899779.1| translocation protein TolB [Chromobacterium violaceum ATCC 12472]
gi|67461997|sp|Q7P1V3.1|TOLB_CHRVO RecName: Full=Protein TolB; Flags: Precursor
gi|34101419|gb|AAQ57788.1| TolB protein precursor [Chromobacterium violaceum ATCC 12472]
Length = 428
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 31/175 (17%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ DG + T+++ + SWSP +H+ Y S F S++ V +
Sbjct: 178 LQISDVDGQRSQTILRSTEPIISPSWSPDGRHIAYVS----FASQKPVVWV--------- 224
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+++ + G+N+ P+ SPDG L SG+ +++++A G
Sbjct: 225 ------QDLATGQRRAVANFKGSNSAPAWSPDGSKLAVVLTTSGNSQIYIINAAGGP--- 275
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH-NPDNVEAFSLYVIKPDGSGLRRI 528
R+L IDT P++SP G ++ F S+R NP +Y + +G +R+
Sbjct: 276 -ARRLMYNGGIDTEPAFSPDGSMVYFVSDRSGNPQ------IYRVPVNGGNAQRV 323
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 80/199 (40%), Gaps = 30/199 (15%)
Query: 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTST 392
S P++SPDG + N+ I I + G R YN TE +
Sbjct: 243 SAPAWSPDGSKLAVVLTTSGNSQIYIINAAGGPA------RRLMYNGGIDTEPAFSPDGS 296
Query: 393 GPIFQSERA-TVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451
F S+R+ QI RV P + N + + E N P SPDGK LV
Sbjct: 297 MVYFVSDRSGNPQIYRV-----PVNGGNAQRVTW--------EGAYNVSPKLSPDGKTLV 343
Query: 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVE 511
+ +G+ + D D RQL+DG + + PS++P G ++ +SS D
Sbjct: 344 YIRRSAGNFRVMSQDLA----TNDSRQLSDGSYSER-PSFAPNGRMVLYSS-----DAGG 393
Query: 512 AFSLYVIKPDGSGLRRIHV 530
LY DGS ++ V
Sbjct: 394 QSVLYAATADGSSKVKLAV 412
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 68/169 (40%), Gaps = 32/169 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG+ + + S S ++V D G+ R + + ++ P+WSP G +A
Sbjct: 201 PSWSPDGRHIAYVSFASQKPVVWVQDLATGQR----RAVANFKGSNSAPAWSPDGSKLAV 256
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ Y+I G RR+ +G +D E FS DG + F +
Sbjct: 257 VLTTSGNSQI-----YIINAAGGPARRLMY-----NGGIDTEP----AFSPDGSMVYFVS 302
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ P +Y V ++G +R+TW G N +P P
Sbjct: 303 DRSG---NP-----------QIYRVPVNGGNAQRVTWEGAYNVSPKLSP 337
>gi|399044791|ref|ZP_10738346.1| tol-pal system beta propeller repeat protein TolB [Rhizobium sp.
CF122]
gi|398056756|gb|EJL48741.1| tol-pal system beta propeller repeat protein TolB [Rhizobium sp.
CF122]
Length = 436
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 73/175 (41%), Gaps = 33/175 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ +V + G+ N++ +D + IDT PS+SP G I F
Sbjct: 253 PRFSPDGQKVVMSLQQEGNANIYTMDLRSRTTTRLTSTAA----IDTSPSYSPDGGRIVF 308
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGSG RI G G+ +S G+ + FT
Sbjct: 309 ESDRGGKQQI-----YVMNADGSGQTRISF----GDGNYSTP-----VWSPRGDLIAFTK 354
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDL 615
G + + V+K DGSG R LT G+ N P W P ++ +
Sbjct: 355 QSGGKFS--------------IGVMKPDGSGERILT-TGFHNEGPTWAPNGRVIM 394
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 32/164 (19%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNS--WSPTEKHVIYTST 392
PS+SPDGG IVF D I + +DGS + T I Y++ WSP + +T
Sbjct: 297 PSYSPDGGRIVFESDRGGKQQIYVMNADGSGQ-TRISFGDGNYSTPVWSPRGDLIAFTKQ 355
Query: 393 GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETG-NNAFPSCSPDGKFLV 451
+ S + D + +ILT TG +N P+ +P+G+ ++
Sbjct: 356 SG-----------GKFSIGVMKPDGSGE-------RILT---TGFHNEGPTWAPNGRVIM 394
Query: 452 F--RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
F ++ +G L+ +D G QL P + P+WSP
Sbjct: 395 FFRQAAGAGGPQLYSID-----LTGYNEQLIKTPTYASDPAWSP 433
>gi|218921784|emb|CAW30773.1| P100-GA [Haemonchus contortus]
Length = 746
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 93/203 (45%), Gaps = 44/203 (21%)
Query: 435 TGNNAFPS---CSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR-QLTDGPWIDTMPS 490
T N+ + S SPDGK +V S +SG +L++ D NG ++ QLT D S
Sbjct: 148 TKNDVYDSEAFISPDGKKIVHTSKQSGDLDLWITD-----INGALKIQLTKAKGYDGGAS 202
Query: 491 WSPKGDLIAFSSNRHNPDNVEAFSLY--VIKPDGSGLRRIHVAGPEGSGDVDRERINHVC 548
+SP G+ I F ++R P + +Y ++K + +++ ++ + N VC
Sbjct: 203 FSPDGEKIVFHASR--PTGKDKIDIYDHLLKNNLVATKKMELS---------VMKANTVC 251
Query: 549 FSADGEWLLFTANLGAVMAEPVSWP----------------NQFQPYGDLYVVKLDGSGL 592
+ GE +LF G + P P N++ LY+V DG+GL
Sbjct: 252 GNVTGERILFNRERGVLDWTPYYHPDNKRIIFSSNMNSTKSNEYH----LYIVNEDGTGL 307
Query: 593 RRLTW-NGYENGTPAW-HPGNQL 613
R+T+ +GY N P + H G ++
Sbjct: 308 ERVTFGSGYFNAFPVFSHDGKKV 330
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 24/145 (16%)
Query: 476 IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPE 534
++QLTD P + SP G IAF+S R L+ + DG+ L ++ G +
Sbjct: 547 VKQLTDEPGYNAEAVLSPDGKTIAFTSIRTGD-----LELWTMNTDGTNLHQVTKEYGYD 601
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG-------DLYVVKL 587
G FS DG+ L+F A+ E + + YG ++YVV +
Sbjct: 602 GG----------CFFSPDGKRLVFRASRPKTQKEKEKY-QKLLDYGLVEPTLTEIYVVDV 650
Query: 588 DGSGLRRLTWNGYENGTPAWHPGNQ 612
DG L+++T G + P + P N+
Sbjct: 651 DGKNLKQVTNFGVASWAPYYLPDNK 675
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 40/211 (18%)
Query: 427 VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID 486
VK LT +E G NA SPDGK + F S R+G L+ ++ +G ++ Q+T D
Sbjct: 547 VKQLT-DEPGYNAEAVLSPDGKTIAFTSIRTGDLELWTMN-TDGT---NLHQVTKEYGYD 601
Query: 487 TMPSWSPKGDLIAFSSNR-HNPDNVEAFS--------------LYVIKPDGSGLRRIHVA 531
+SP G + F ++R E + +YV+ DG L+++
Sbjct: 602 GGCFFSPDGKRLVFRASRPKTQKEKEKYQKLLDYGLVEPTLTEIYVVDVDGKNLKQVTNF 661
Query: 532 GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG 591
G + D + ++F++N QF + LYV+ DG+G
Sbjct: 662 GVASWAPY---------YLPDNKRIIFSSNYNMS-------AKQFGSFA-LYVINEDGTG 704
Query: 592 LRRLTW-NGYE-NGTPAWH-PGNQLDLGKLR 619
L R+T+ GY+ N P ++ GN+L G R
Sbjct: 705 LERVTFGEGYQFNAFPMFNRAGNKLVWGSSR 735
>gi|15604171|ref|NP_220686.1| translocation protein TolB [Rickettsia prowazekii str. Madrid E]
gi|383487141|ref|YP_005404821.1| translocation protein TolB [Rickettsia prowazekii str. GvV257]
gi|383487718|ref|YP_005405397.1| translocation protein TolB [Rickettsia prowazekii str. Chernikova]
gi|383488565|ref|YP_005406243.1| translocation protein TolB [Rickettsia prowazekii str. Katsinyian]
gi|383489406|ref|YP_005407083.1| translocation protein TolB [Rickettsia prowazekii str. Dachau]
gi|383499543|ref|YP_005412904.1| translocation protein TolB [Rickettsia prowazekii str. BuV67-CWPP]
gi|383500380|ref|YP_005413740.1| translocation protein TolB [Rickettsia prowazekii str. RpGvF24]
gi|386082138|ref|YP_005998715.1| TolB protein [Rickettsia prowazekii str. Rp22]
gi|6647892|sp|Q9ZDM5.1|TOLB_RICPR RecName: Full=Protein TolB; Flags: Precursor
gi|3860863|emb|CAA14763.1| TOLB PROTEIN PRECURSOR (tolB) [Rickettsia prowazekii str. Madrid E]
gi|292571902|gb|ADE29817.1| TolB protein precursor [Rickettsia prowazekii str. Rp22]
gi|380757506|gb|AFE52743.1| translocation protein TolB [Rickettsia prowazekii str. GvV257]
gi|380758077|gb|AFE53313.1| translocation protein TolB [Rickettsia prowazekii str. RpGvF24]
gi|380760597|gb|AFE49119.1| translocation protein TolB [Rickettsia prowazekii str. Chernikova]
gi|380761444|gb|AFE49965.1| translocation protein TolB [Rickettsia prowazekii str. Katsinyian]
gi|380762289|gb|AFE50809.1| translocation protein TolB [Rickettsia prowazekii str. BuV67-CWPP]
gi|380763129|gb|AFE51648.1| translocation protein TolB [Rickettsia prowazekii str. Dachau]
Length = 443
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 33/177 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDGK V ++G +++ +D + N +LT+G I+T PS+SP G I F
Sbjct: 248 PRFSPDGKKAVMSIAKNGSTHIYEIDLATKQLN----KLTNGFGINTSPSYSPDGKKIVF 303
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSA----DGEWL 556
+S+++ LY++ DGS ++RI + R +++ F+ DGE
Sbjct: 304 NSDKNGVPQ-----LYIMNSDGSDVQRISFGVGSYASPSWSPRGDYIAFTKIIRQDGEK- 357
Query: 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
T N+G + A P Q +G+ R+ +GY +P W P ++
Sbjct: 358 --TFNIGIMKAYP-------QDHGN----------SERIITSGYLVDSPCWSPNGRV 395
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 37/179 (20%)
Query: 422 EIPCDVKILTKEETG--NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL 479
EI K L K G N PS SPDGK +VF S ++G L+++++ +G D++++
Sbjct: 271 EIDLATKQLNKLTNGFGINTSPSYSPDGKKIVFNSDKNGVPQLYIMNS-DGS---DVQRI 326
Query: 480 TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV--AGPEGSG 537
+ G PSWSP+GD IAF+ +I+ DG I + A P+ G
Sbjct: 327 SFGVGSYASPSWSPRGDYIAFTK--------------IIRQDGEKTFNIGIMKAYPQDHG 372
Query: 538 DVDR-----ERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG 591
+ +R ++ C+S +G ++F+ WP++ G + +D +G
Sbjct: 373 NSERIITSGYLVDSPCWSPNGRVIMFSK----------GWPSKANAPGKNKIFTIDLTG 421
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 24/164 (14%)
Query: 314 HLEPVASPVKELRMLRLNG----SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTL 369
H+ + K+L L NG + PS+SPDG IVFN D + I SDGS +
Sbjct: 268 HIYEIDLATKQLNKLT-NGFGINTSPSYSPDGKKIVFNSDKNGVPQLYIMNSDGSDVQRI 326
Query: 370 IKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK 428
++ + SWSP ++ +T I Q T I + + P D N E I
Sbjct: 327 SFGVGSYASPSWSPRGDYIAFTKI--IRQDGEKTFNIGIM--KAYPQDHGNSERIITSGY 382
Query: 429 ILTKEETGNNAFPSCSPDGKFLVFRSG------RSGHKNLFVLD 466
++ P SP+G+ ++F G G +F +D
Sbjct: 383 LVDS--------PCWSPNGRVIMFSKGWPSKANAPGKNKIFTID 418
>gi|430805387|ref|ZP_19432502.1| translocation protein TolB [Cupriavidus sp. HMR-1]
gi|429502424|gb|ELA00735.1| translocation protein TolB [Cupriavidus sp. HMR-1]
Length = 446
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 24/150 (16%)
Query: 356 IKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ I+ SDG + + L +WSP + V Y S F++ + V +
Sbjct: 195 LLISDSDGQNAQIALTSTEPIISPAWSPDGRRVAYVS----FEARKPVVYV--------- 241
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++ +++ + GNN+ PS SPDG+ L R G+ ++ VN + +G
Sbjct: 242 ------HDLATGKRVVVSNQKGNNSAPSWSPDGQHLAVSLSRDGNTQIY---QVNADGSG 292
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
+R+LT IDT P +SP G I F+S+R
Sbjct: 293 -LRRLTRSSAIDTEPQFSPDGRSIYFTSDR 321
Score = 39.3 bits (90), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 73/173 (42%), Gaps = 23/173 (13%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIY 389
N S PS+SPDG + + + N I +DGS L + +SP + + +
Sbjct: 258 NNSAPSWSPDGQHLAVSLSRDGNTQIYQVNADGSGLRRLTRSSAIDTEPQFSPDGRSIYF 317
Query: 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF 449
TS QI R+ P+ EE ++ K N P SPDGK+
Sbjct: 318 TS------DRGGAPQIYRM-----PASG---EESGAAQRVTFKGSY--NVSPRISPDGKY 361
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
L + S RSG L + D NGD+ LTD D PS++ G I +++
Sbjct: 362 LAYIS-RSGGFRLQLQDLS----NGDVTSLTD-TTNDESPSFAANGKYILYAT 408
>gi|259417642|ref|ZP_05741561.1| Tol-Pal system beta propeller repeat protein TolB [Silicibacter sp.
TrichCH4B]
gi|259346548|gb|EEW58362.1| Tol-Pal system beta propeller repeat protein TolB [Silicibacter sp.
TrichCH4B]
Length = 441
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 13/138 (9%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG LVF S RSG L+V+ GE ++++ G P WSP+GD IAF
Sbjct: 301 PSFSPDGSQLVFESDRSGTSQLYVMPVSGGE----AKRISFGQGRYGTPVWSPRGDYIAF 356
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA----GPEGSGDVDRERINHVCFSADGEWL 556
+ N F + V++ DGS R + + GP S + A G+
Sbjct: 357 TKQ-----NAGRFHIGVMRTDGSEERLLTASFLDEGPTWSPNGRVIMFTRETQGASGQAR 411
Query: 557 LFTANLGAVMAEPVSWPN 574
L++ ++ +PV P+
Sbjct: 412 LYSVDISGRNLKPVKTPD 429
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 35/187 (18%)
Query: 428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT 487
+IL+ + P +P+G +V+ G+ +LF +D +N +G+ ++LT P I+T
Sbjct: 244 RILSAGNGSMSFAPRFAPNGHTIVYSQSAGGNTDLFSMD-IN---SGNPQRLTSAPSIET 299
Query: 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV 547
PS+SP G + F S+R LYV+ G +RI G G R
Sbjct: 300 APSFSPDGSQLVFESDRSGTSQ-----LYVMPVSGGEAKRISF----GQG-----RYGTP 345
Query: 548 CFSADGEWLLFTA-NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPA 606
+S G+++ FT N G +F + V++ DGS R LT + + G P
Sbjct: 346 VWSPRGDYIAFTKQNAG-----------RFH----IGVMRTDGSEERLLTASFLDEG-PT 389
Query: 607 WHPGNQL 613
W P ++
Sbjct: 390 WSPNGRV 396
>gi|239832783|ref|ZP_04681112.1| Tol-Pal system beta propeller repeat protein TolB [Ochrobactrum
intermedium LMG 3301]
gi|239825050|gb|EEQ96618.1| Tol-Pal system beta propeller repeat protein TolB [Ochrobactrum
intermedium LMG 3301]
Length = 475
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 77/179 (43%), Gaps = 34/179 (18%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
G P SPDG+ +V + G N++ +D N +LT+ IDT S+SP
Sbjct: 286 GMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRSTT----RLTNSQAIDTGASYSPD 341
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
G I F+S+R LYV+ DGS RRI + S V +S G+
Sbjct: 342 GSQIVFTSDRGGRPQ-----LYVMGADGSNPRRISMGDGSYSTPV---------WSPRGD 387
Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+ FT Q Q + V+K DGSG R LT +G+ N P W P ++
Sbjct: 388 LIAFT--------------KQSQGQFSIGVMKTDGSGERLLT-SGFHNEGPTWAPNGRV 431
>gi|317486270|ref|ZP_07945102.1| tol-Pal system beta propeller repeat protein TolB [Bilophila
wadsworthia 3_1_6]
gi|316922440|gb|EFV43694.1| tol-Pal system beta propeller repeat protein TolB [Bilophila
wadsworthia 3_1_6]
Length = 440
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 98/244 (40%), Gaps = 58/244 (23%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDR---------TAFYNSWSPTEK 385
PS+S DG IVF+H + KS W + +R T +++P K
Sbjct: 214 PSWSLDGRFIVFSHMDD--------KSHALGVWDRLTNRVQRIRFPGNTVIGPTFTPGNK 265
Query: 386 HVIYTSTGP---------IFQSER----------------ATVQIARVSFQLDPSDDNNR 420
+ STG FQ ER A ++A S ++ +
Sbjct: 266 VAVSLSTGKNPDIFMLNHAFQKERTLEANGTINVSPTFDAAGTKMAFTSNRMGGPQIFMK 325
Query: 421 EEIPCDVKILTKEETGN-NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL 479
+ V +TK+ GN N PS SPDG + F S +FV D G +Q+
Sbjct: 326 DLASGSVSRVTKQ--GNYNTEPSMSPDGTLIAFSRLTSEGNRIFVQDLTTGT----EQQI 379
Query: 480 TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV 539
+ GP D +PS++P IAF+SNR P+ + Y+ G +++ P GSGD
Sbjct: 380 SFGPGNDVLPSFAPDSYFIAFTSNRSGPNQI-----YLTTRHGGDAKKV----PTGSGDA 430
Query: 540 DRER 543
R
Sbjct: 431 SFPR 434
>gi|113970703|ref|YP_734496.1| translocation protein TolB [Shewanella sp. MR-4]
gi|114047932|ref|YP_738482.1| translocation protein TolB [Shewanella sp. MR-7]
gi|122944592|sp|Q0HTY0.1|TOLB_SHESR RecName: Full=Protein TolB; Flags: Precursor
gi|123029559|sp|Q0HHM8.1|TOLB_SHESM RecName: Full=Protein TolB; Flags: Precursor
gi|113885387|gb|ABI39439.1| TolB, N-terminal domain protein [Shewanella sp. MR-4]
gi|113889374|gb|ABI43425.1| TolB, N-terminal domain protein [Shewanella sp. MR-7]
Length = 442
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 24/177 (13%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHV 387
+L G +F +V NH + + IA DG L++ + SWSP + +
Sbjct: 167 KLTGIRGAFLTRISYVVVNHSQKAAYSLMIADYDGYNEQMLLRSPEPLMSPSWSPDGRRL 226
Query: 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
Y S F++++A + + +++ V+ G N P+ SPDG
Sbjct: 227 AYVS----FENKKAEIFV---------------QDLYTQVRTKVSSFPGINGAPTFSPDG 267
Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
K L + G ++V+D +++T+ IDT PSW P G + F+S R
Sbjct: 268 KSLAVTLSKDGQPEIYVIDIATKA----AKRITNHYSIDTEPSWYPDGKSLLFTSER 320
>gi|269139918|ref|YP_003296619.1| translocation protein [Edwardsiella tarda EIB202]
gi|387868440|ref|YP_005699909.1| tolB protein [Edwardsiella tarda FL6-60]
gi|267985579|gb|ACY85408.1| translocation protein [Edwardsiella tarda EIB202]
gi|304559753|gb|ADM42417.1| tolB protein precursor [Edwardsiella tarda FL6-60]
Length = 430
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 19/129 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G IRQ+TDG +T P+W P
Sbjct: 245 HNGSPAFSPDGSKLAFALSKTGSLNLYVMDLASGA----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ + Y + +G +R+ EGS + D E S DG++L
Sbjct: 301 NLAFTSDQAGRPQI-----YKMNINGGAAQRLTW---EGSQNQDAE------VSPDGKFL 346
Query: 557 -LFTANLGA 564
+ ++N GA
Sbjct: 347 VMVSSNAGA 355
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 38/165 (23%)
Query: 441 PSCSPDGK---FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497
P+ SPDG ++ F SGRS V+ ++ NG IRQ+ P + P++SP G
Sbjct: 205 PAWSPDGSKLAYVTFESGRSA----LVIQTLS---NGAIRQVASFPRHNGSPAFSPDGSK 257
Query: 498 IAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL 557
+AF+ ++ + +LYV+ +R++ +G R + D + L
Sbjct: 258 LAFALSKTG-----SLNLYVMDLASGAIRQVT----DG-----RSNNTEPTWFPDSQNLA 303
Query: 558 FTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
FT++ +P +Y + ++G +RLTW G +N
Sbjct: 304 FTSDQAG------------RP--QIYKMNINGGAAQRLTWEGSQN 334
>gi|196019748|ref|XP_002119033.1| hypothetical protein TRIADDRAFT_63003 [Trichoplax adhaerens]
gi|190577229|gb|EDV18481.1| hypothetical protein TRIADDRAFT_63003 [Trichoplax adhaerens]
Length = 251
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 101/229 (44%), Gaps = 39/229 (17%)
Query: 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNA----FPSCSP 445
TS S R ++ R++F + N + D++ ++ G+ A P+ SP
Sbjct: 12 TSGNEFILSPRFDMKSQRITFMSYKNKKNPPKVYVLDLETGEQDLIGDMAGMTFAPNFSP 71
Query: 446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH 505
D +V + G N++ +D +N + ++ + +IDT PS+SP G I F+S+R
Sbjct: 72 DNNHVVMSLAKKGTTNIYEID-LNTKIKKELTNIYG--FIDTSPSYSPDGKKILFNSDRG 128
Query: 506 NPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV 565
+YV+ DG +++I EGS +S DG+W+ FT L
Sbjct: 129 G----RRTQIYVMDRDGQNIKKISSG--EGS-------YRTPIWSPDGKWIAFTKIL--- 172
Query: 566 MAEPVSWPNQFQPYGDLY--VVKLDGSGLRRLTWNGYENGTPAWHPGNQ 612
G+ Y ++K DGS R LT + E G P+W P ++
Sbjct: 173 -------------LGNFYIGIMKPDGSDERLLTSSWLEEG-PSWAPNSR 207
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 79/205 (38%), Gaps = 43/205 (20%)
Query: 335 PSFSPDGGLIVFN---------HDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEK 385
P+FSPD +V + ++ +LN IK K T I S+SP K
Sbjct: 67 PNFSPDNNHVVMSLAKKGTTNIYEIDLNTKIK-------KELTNIYGFIDTSPSYSPDGK 119
Query: 386 HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP 445
++ F S+R R + D N ++I G+ P SP
Sbjct: 120 KIL-------FNSDRGG---RRTQIYVMDRDGQNIKKISSG--------EGSYRTPIWSP 161
Query: 446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH 505
DGK++ F G+ + ++ +G +L W++ PSW+P I F +
Sbjct: 162 DGKWIAFTKILLGNFYIGIMKP-----DGSDERLLTSSWLEEGPSWAPNSRTIIFGRQKR 216
Query: 506 NPDNVEAFSLYVIKPDGSGLRRIHV 530
+ N +Y I DG+ R I+
Sbjct: 217 DGSN----KIYAIDIDGNNERIIYT 237
>gi|444313091|ref|ZP_21148650.1| translocation protein TolB [Ochrobactrum intermedium M86]
gi|443483529|gb|ELT46372.1| translocation protein TolB [Ochrobactrum intermedium M86]
Length = 443
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 79/179 (44%), Gaps = 34/179 (18%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
G P SPDG+ +V + G N++ +D N +LT+ IDT S+SP
Sbjct: 254 GMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRSTT----RLTNSQAIDTGASYSPD 309
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
G I F+S+R LYV+ DGS RRI + +GS + +S G+
Sbjct: 310 GSQIVFTSDRGGRPQ-----LYVMGADGSNPRRISMG--DGS-------YSTPVWSPRGD 355
Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+ FT Q Q + V+K DGSG R LT +G+ N P W P ++
Sbjct: 356 LIAFT--------------KQSQGQFSIGVMKTDGSGERLLT-SGFHNEGPTWAPNGRV 399
>gi|419911592|ref|ZP_14430063.1| translocation protein TolB [Escherichia coli KD1]
gi|388393269|gb|EIL54655.1| translocation protein TolB [Escherichia coli KD1]
Length = 430
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+++D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYIMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSNG 353
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LY++ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYIMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|217973704|ref|YP_002358455.1| translocation protein TolB [Shewanella baltica OS223]
gi|254764842|sp|B8EAK3.1|TOLB_SHEB2 RecName: Full=Protein TolB; Flags: Precursor
gi|217498839|gb|ACK47032.1| Tol-Pal system beta propeller repeat protein TolB [Shewanella
baltica OS223]
Length = 442
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 24/177 (13%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHV 387
+L G +F +V NH + + +A DG L++ + +WSP + +
Sbjct: 167 KLTGIRGAFLTRISYVVVNHTQKAPYQLMVADYDGVNEQMLLRSPEPLMSPTWSPDGRRL 226
Query: 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
Y S F++++A + + +++ V+ G N P+ SPDG
Sbjct: 227 AYVS----FENKKAEIFV---------------QDLYTQVRTKVSSFPGINGAPAFSPDG 267
Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
K L + G ++++D I+++T+ IDT PSW P G + F+S R
Sbjct: 268 KSLAITLSKDGQPEIYIIDIATKA----IKRITNHYAIDTEPSWYPDGKSLIFTSER 320
>gi|365838288|ref|ZP_09379638.1| Tol-Pal system beta propeller repeat protein TolB [Hafnia alvei
ATCC 51873]
gi|364560249|gb|EHM38194.1| Tol-Pal system beta propeller repeat protein TolB [Hafnia alvei
ATCC 51873]
Length = 431
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 37/179 (20%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F +SG NL+V+D +G IRQ+TDG +T PSW P
Sbjct: 246 HNGAPAFSPDGSKLAFALSKSGSLNLYVMDLGSGA----IRQVTDGRSNNTEPSWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS-GDVDRERINHVCFSADGEW 555
+AF+S++ + Y + +G R+ G + GDV S+DG++
Sbjct: 302 NLAFTSDQGGRPQI-----YKVNINGGAPERLTWEGSQNQDGDV----------SSDGKF 346
Query: 556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLD-GSGLRRLTWNGYENGTPAWHPGNQL 613
L+ G G ++ KLD GS ++ + + + TP+ P +
Sbjct: 347 LVMVGTSG----------------GSQHITKLDLGSNANQVLTSTFLDETPSIAPNGTM 389
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG K+ V+ ++ NG IRQ+ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKLAYVTFESG-KSALVIQTLS---NGAIRQVASFPRHNGAPAFSPDGSKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 262 ALSKSG-----SLNLYVMDLGSGAIRQVTDG---------RSNNTEPSWFPDSQNLAFTS 307
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ G +P +Y V ++G RLTW G +N
Sbjct: 308 DQGG------------RP--QIYKVNINGGAPERLTWEGSQN 335
>gi|448711558|ref|ZP_21701340.1| peptidase S9 prolyl oligopeptidase active site domain-containing
protein [Halobiforma nitratireducens JCM 10879]
gi|445791621|gb|EMA42259.1| peptidase S9 prolyl oligopeptidase active site domain-containing
protein [Halobiforma nitratireducens JCM 10879]
Length = 675
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 48/84 (57%), Gaps = 14/84 (16%)
Query: 439 AFPSCSPDGKFLVF--RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW---SP 493
+F S +PDG+ + F +G H LFV DA +G IRQLTD P DT+ SW P
Sbjct: 112 SFVSWAPDGELIAFGKDAGADEHDQLFVCDADDGR----IRQLTDQP--DTIHSWGGWCP 165
Query: 494 KGDLIAFSSNRHNPDNVEAFSLYV 517
GD IAF++NR +P F +YV
Sbjct: 166 DGDRIAFTANRRDPST---FDVYV 186
>gi|78065363|ref|YP_368132.1| translocation protein TolB [Burkholderia sp. 383]
gi|119371038|sp|Q39J78.1|TOLB_BURS3 RecName: Full=Protein TolB; Flags: Precursor
gi|77966108|gb|ABB07488.1| Periplasmic component of the Tol biopolymer transport system
[Burkholderia sp. 383]
Length = 431
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 24/150 (16%)
Query: 356 IKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG + R L SWSP+ V Y S F+ ++ V I
Sbjct: 178 LQISDSDGQNARIALSSTEPIISPSWSPSGTKVAYVS----FERKKPIVYI--------- 224
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++P + + ++ GNN+ P+ SPD L +G+ ++ +++ G
Sbjct: 225 ------HDLPTGRRYIVSDQKGNNSAPAWSPDSNTLAVALSLTGNTQIYTVNSTGG---- 274
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
+R+LT IDT P +SP G I F+S+R
Sbjct: 275 GLRRLTQSSSIDTEPFYSPDGHWIYFTSDR 304
>gi|416276886|ref|ZP_11644178.1| translocation protein TolB [Shigella dysenteriae CDC 74-1112]
gi|420379008|ref|ZP_14878501.1| tol-Pal system beta propeller repeat protein TolB [Shigella
dysenteriae 225-75]
gi|320172957|gb|EFW48185.1| translocation protein TolB [Shigella dysenteriae CDC 74-1112]
gi|391306001|gb|EIQ63768.1| tol-Pal system beta propeller repeat protein TolB [Shigella
dysenteriae 225-75]
Length = 430
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ +RQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----VRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLGA 564
+ ++ G
Sbjct: 347 VMVSSNGG 354
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQVRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|296103329|ref|YP_003613475.1| translocation protein TolB [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|392978170|ref|YP_006476758.1| translocation protein TolB [Enterobacter cloacae subsp. dissolvens
SDM]
gi|401762838|ref|YP_006577845.1| translocation protein TolB [Enterobacter cloacae subsp. cloacae
ENHKU01]
gi|295057788|gb|ADF62526.1| translocation protein TolB [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|392324103|gb|AFM59056.1| translocation protein TolB [Enterobacter cloacae subsp. dissolvens
SDM]
gi|400174372|gb|AFP69221.1| translocation protein TolB [Enterobacter cloacae subsp. cloacae
ENHKU01]
Length = 430
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N PS SPDG L F ++G NL+V+D +G+ IRQ+TDG +T PSW P
Sbjct: 245 HNGAPSFSPDGSKLAFALSKTGSLNLYVMDIGSGQ----IRQVTDGRSNNTEPSWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEG-SGDVDRERINHVCFSADG 553
+AF+S D +Y + +G +RI G + + DV + V S++G
Sbjct: 301 NLAFTS-----DQAGRPQIYKVNINGGAPQRITWEGSQNQNADVSSDGKFMVMVSSNG 353
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 32/175 (18%)
Query: 428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT 487
+ L K + P+ SPDG L + + SG L + NG +RQ+ P +
Sbjct: 192 QFLVKRSSQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNG 247
Query: 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV 547
PS+SP G +AF+ ++ + +LYV+ GSG + R+ +
Sbjct: 248 APSFSPDGSKLAFALSKTG-----SLNLYVMD--------------IGSGQI-RQVTDGR 287
Query: 548 CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ + W + NL A ++ P +Y V ++G +R+TW G +N
Sbjct: 288 SNNTEPSWFPDSQNL-AFTSDQAGRPQ-------IYKVNINGGAPQRITWEGSQN 334
>gi|153000267|ref|YP_001365948.1| translocation protein TolB [Shewanella baltica OS185]
gi|418026143|ref|ZP_12665115.1| Tol-Pal system beta propeller repeat protein TolB [Shewanella
baltica OS625]
gi|166988082|sp|A6WM46.1|TOLB_SHEB8 RecName: Full=Protein TolB; Flags: Precursor
gi|151364885|gb|ABS07885.1| Tol-Pal system beta propeller repeat TolB [Shewanella baltica
OS185]
gi|353534464|gb|EHC04034.1| Tol-Pal system beta propeller repeat protein TolB [Shewanella
baltica OS625]
Length = 442
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 24/177 (13%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHV 387
+L G +F +V NH + + +A DG L++ + +WSP + +
Sbjct: 167 KLTGIRGAFLTRISYVVVNHTQKAPYQLMVADYDGVNEQMLLRSPEPLMSPTWSPDGRRL 226
Query: 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
Y S F++++A + + +++ V+ G N P+ SPDG
Sbjct: 227 AYVS----FENKKAEIFV---------------QDLYTQVRTKVSSFPGINGAPAFSPDG 267
Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
K L + G ++++D I+++T+ IDT PSW P G + F+S R
Sbjct: 268 KSLAITLSKDGQPEIYIIDIATKA----IKRITNHYAIDTEPSWYPDGKSLIFTSER 320
>gi|87118952|ref|ZP_01074850.1| tolB protein [Marinomonas sp. MED121]
gi|86165343|gb|EAQ66610.1| tolB protein [Marinomonas sp. MED121]
Length = 421
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 113/272 (41%), Gaps = 43/272 (15%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A +DG + +++ + + SWS + + Y +F+ R + + ++
Sbjct: 172 LQVADADGHRPQVIVESKEPILSPSWSRNGRFITYV----MFRDRRPNIFVQELA----- 222
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
R++I + G N P+ SPDGK L + G+ ++VLD +
Sbjct: 223 --TGKRQKIA--------QYRGLNGAPAWSPDGKQLALVLSKDGNPEIYVLDIATQK--- 269
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR-HNPD--NVEAFSLYV-------------- 517
++++T+ IDT PSW P G I F+S+R NP V+ S V
Sbjct: 270 -LQRITNHYSIDTEPSWEPDGKGIVFTSDRGGNPQIYRVDISSKAVERVTFEGDLNTRAR 328
Query: 518 IKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQ 577
+ PDG L + V EG+ + + + + E L + A V + ++
Sbjct: 329 MTPDGRYL--VTVQKNEGNYHIALQDMKNGRVQILTETYLDESPSIAPNGSMVMYATTYK 386
Query: 578 PYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G L VV +DG RL E PAW P
Sbjct: 387 GKGILAVVSVDGLVKYRLPSAAGEVREPAWSP 418
>gi|440229912|ref|YP_007343705.1| tol-pal system beta propeller repeat protein TolB [Serratia
marcescens FGI94]
gi|440051617|gb|AGB81520.1| tol-pal system beta propeller repeat protein TolB [Serratia
marcescens FGI94]
Length = 430
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 19/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F +SG NL+V+D +G+ QLT+G +T P+W P G
Sbjct: 245 HNGAPAFSPDGSKLAFALSKSGSLNLYVMDLNSGQMT----QLTNGRSNNTEPAWFPDGQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ + Y + G +R+ EG+ + D E SADG++L
Sbjct: 301 SLAFTSDQGGRPQI-----YKMSASGGAAQRLTW---EGAQNQDSE------VSADGKFL 346
Query: 557 -LFTANLG 563
+ T N G
Sbjct: 347 VMVTTNNG 354
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG L + + SG L V NG +RQ+ P + P++SP G +AF
Sbjct: 205 PSWSPDGSKLAYVTFESGRSALVVQTLSNGA----VRQIASYPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ + + ++ R + DG+ L FT+
Sbjct: 261 ALSKSG-----SLNLYVMDLNSGQMTQLTNG---------RSNNTEPAWFPDGQSLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ G +P +Y + G +RLTW G +N
Sbjct: 307 DQGG------------RP--QIYKMSASGGAAQRLTWEGAQN 334
>gi|383481343|ref|YP_005390258.1| translocation protein TolB [Rickettsia rhipicephali str.
3-7-female6-CWPP]
gi|378933682|gb|AFC72185.1| translocation protein TolB [Rickettsia rhipicephali str.
3-7-female6-CWPP]
Length = 444
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 128/301 (42%), Gaps = 37/301 (12%)
Query: 298 YHRFRGESTEGQSTIPHLEPVAS--PVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG 355
Y + G++ + I ++ +S +K + ++ +G+ + +G +V F +A
Sbjct: 152 YEKITGDAGYFDTKIVYVSESSSLPKIKRIALMDYDGANNKYLTNGKSLVLTPRFARSAD 211
Query: 356 IKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS 415
S +KR L+ Y T K + I + R + + + +
Sbjct: 212 KIFYVSYATKRRALV------YEKDLKTGKESVVGDFPGISFAPRFSPDGRKAVMSIAQN 265
Query: 416 DDNNREEIPCDVKILTK--EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
+ EI K L K + G N PS SPDGK +V+ S R+G L+++++ +G
Sbjct: 266 GSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGKKIVYNSDRNGVPQLYIMNS-DGS-- 322
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP---DGSGLRRIHV 530
D+++++ G PSWSP+GD IAF+ D + F++ ++K D RI
Sbjct: 323 -DVQRISFGGGSYAAPSWSPRGDYIAFTKITRG-DGGKTFNIGIMKACPQDDENSERIIT 380
Query: 531 AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590
+G + C+S +G ++FT WP++ + G + +D +
Sbjct: 381 SG---------YLVESPCWSPNGRVIMFTKG----------WPSRAKAPGKNKIFAIDLT 421
Query: 591 G 591
G
Sbjct: 422 G 422
>gi|67458884|ref|YP_246508.1| translocation protein TolB [Rickettsia felis URRWXCal2]
gi|75536675|sp|Q4UM77.1|TOLB_RICFE RecName: Full=Protein TolB; Flags: Precursor
gi|67004417|gb|AAY61343.1| TolB protein precursor [Rickettsia felis URRWXCal2]
Length = 444
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 127/301 (42%), Gaps = 37/301 (12%)
Query: 298 YHRFRGESTEGQSTIPHLEPVAS--PVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG 355
Y + G++ + I ++ S +K + ++ +G+ + +G +V F +A
Sbjct: 152 YEKITGDAGYFDTKIVYVSESTSLPKIKRIALMDYDGANNKYLTNGKSLVLTPRFARSAD 211
Query: 356 IKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS 415
S +KR L+ Y T K + I + R + + + +
Sbjct: 212 KIFYVSYATKRRALV------YEKDLKTGKESVVGDFSGISFAPRFSPDGRKAVMSIAKN 265
Query: 416 DDNNREEIPCDVKILTK--EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
+ EI K L K + G N PS SPDGK +V+ S R+G L+++++ +G
Sbjct: 266 GSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGKKIVYNSDRNGVPQLYIMNS-DGS-- 322
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP---DGSGLRRIHV 530
D+++++ G T PSWSP+GD IAF+ + + F++ ++K D RI
Sbjct: 323 -DVQRISFGGGSYTAPSWSPRGDYIAFTKITRGAEG-KTFNIGIMKACPQDDENSERIIT 380
Query: 531 AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590
+G + C+S +G ++F WP++ + G + +D +
Sbjct: 381 SG---------YLVESPCWSPNGRVIMFAKG----------WPSRAKAPGKNKIFAIDLT 421
Query: 591 G 591
G
Sbjct: 422 G 422
>gi|299067719|emb|CBJ38928.1| protein tolB, component of the tol-pal system [Ralstonia
solanacearum CMR15]
Length = 435
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 26/178 (14%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG+ + L + SWSP V Y S F+S + V +
Sbjct: 183 LQISDSDGANPQVALTSNEPIISPSWSPDGTKVAYVS----FESRKPVVYV--------- 229
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++ + + + GNN+ P+ SPDG+ + R G+ ++ VN + +G
Sbjct: 230 ------HDLITGRRAVISNQKGNNSAPAWSPDGRRVAVALSRDGNTQIY---QVNADGSG 280
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
+R+LT IDT PS+SP G I F+S+R + + + V D +R+ G
Sbjct: 281 -LRRLTRSSAIDTEPSFSPDGRSIYFTSDRGGAPQI--YRMPVEGEDAGSAQRVTFKG 335
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 71/173 (41%), Gaps = 22/173 (12%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIY 389
N S P++SPDG + + N I +DGS L + S+SP + + +
Sbjct: 246 NNSAPAWSPDGRRVAVALSRDGNTQIYQVNADGSGLRRLTRSSAIDTEPSFSPDGRSIYF 305
Query: 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF 449
TS QI R+ + + + R + G N P SPDGK
Sbjct: 306 TS------DRGGAPQIYRMPVEGEDAGSAQRVTF----------KGGYNTSPRVSPDGKL 349
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
L + S G L+V D NG+ G LTD + D PS++ G I +++
Sbjct: 350 LAYISRVGGAFKLYVQDLSNGDVTG----LTDTSY-DESPSFAANGKFILYAT 397
>gi|365969589|ref|YP_004951150.1| TolB [Enterobacter cloacae EcWSU1]
gi|365748502|gb|AEW72729.1| TolB [Enterobacter cloacae EcWSU1]
Length = 431
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N PS SPDG L F ++G NL+V+D +G+ IRQ+TDG +T PSW P
Sbjct: 246 HNGAPSFSPDGTKLAFALSKTGSLNLYVMDIGSGQ----IRQVTDGRSNNTEPSWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEG-SGDVDRERINHVCFSADG 553
+AF+S D +Y + +G +RI G + + DV + V S++G
Sbjct: 302 NLAFTS-----DQAGRPQIYKVNVNGGAPQRITWEGSQNQNADVSSDGKFMVMVSSNG 354
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 32/175 (18%)
Query: 428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT 487
+ L K + P+ SPDG L + + SG L + NG +RQ+ P +
Sbjct: 193 QFLVKRSSQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNG 248
Query: 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV 547
PS+SP G +AF+ ++ + +LYV+ GSG + R+ +
Sbjct: 249 APSFSPDGTKLAFALSKTG-----SLNLYVMD--------------IGSGQI-RQVTDGR 288
Query: 548 CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ + W + NL A ++ P +Y V ++G +R+TW G +N
Sbjct: 289 SNNTEPSWFPDSQNL-AFTSDQAGRPQ-------IYKVNVNGGAPQRITWEGSQN 335
>gi|417473398|ref|ZP_12168811.1| TolB protein, partial [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
gi|353651049|gb|EHC93246.1| TolB protein, partial [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
Length = 193
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 18/121 (14%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P +AF
Sbjct: 12 PAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDSQTLAF 67
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+S++ V Y + +G +RI EGS + D + S+DG++++ +
Sbjct: 68 TSDQAGRPQV-----YKMNINGGAAQRITW---EGSQNQDAD------VSSDGKFMVMVS 113
Query: 561 N 561
+
Sbjct: 114 S 114
>gi|410637516|ref|ZP_11348096.1| TolB protein [Glaciecola lipolytica E3]
gi|410143139|dbj|GAC15301.1| TolB protein [Glaciecola lipolytica E3]
Length = 402
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 111/275 (40%), Gaps = 53/275 (19%)
Query: 358 IAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD 416
+A DG L++ + SWSP + ++Y S F++++ + I
Sbjct: 156 VADYDGMNENILLRSNEPLMSPSWSPDGRKLVYVS----FENKKPQIFI----------- 200
Query: 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI 476
++I + + + G N P SPDG L + G+ ++V+D + +
Sbjct: 201 ----QDIYTGNRTMMTDFPGINGAPVFSPDGNQLAMVLSKDGNPEIYVMDIASKR----L 252
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG---- 532
RQ+T IDT PSWSP G + FSS R + +L K RR+ G
Sbjct: 253 RQITRNRAIDTEPSWSPDGKHLIFSSERGGKPQIYRVNLATGKT-----RRVTFEGDMNL 307
Query: 533 -----PEGSG--DVDRERIN-HVCFSA--DGEWLLFTANLGAVMAEPVSWPN-QFQPYGD 581
P+G+ V+R R N H+ G+ L+ T + P PN Y
Sbjct: 308 GGTFTPDGTQMVMVNRTRGNYHIAKQGVESGDLLVLTKTF--LDESPSLAPNGSMIIYST 365
Query: 582 LY-------VVKLDGSGLRRLTWNGYENGTPAWHP 609
L+ +V LDG RL + + +P+W P
Sbjct: 366 LHEGKQVLSLVSLDGRFKARLPVSEGQVKSPSWSP 400
>gi|222111173|ref|YP_002553437.1| translocation protein tolb [Acidovorax ebreus TPSY]
gi|221730617|gb|ACM33437.1| Tol-Pal system beta propeller repeat protein TolB [Acidovorax
ebreus TPSY]
Length = 440
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 95/260 (36%), Gaps = 66/260 (25%)
Query: 379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN 438
+W+PT + Y S F+S + V + ++ + L G+N
Sbjct: 214 AWAPTGTQLAYVS----FESRKPVVYV---------------HDVATGRRRLIANFRGSN 254
Query: 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
+ P+ SPDG+ L R G L+ +DA NG G+ R+L IDT P +S G I
Sbjct: 255 SAPAWSPDGRTLAVTLSRDGGSQLYTIDA-NG---GEPRRLMQSSGIDTEPVFSSDGRSI 310
Query: 499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLF 558
F S+R V Y + G G R+ GS ++ S DG+WL +
Sbjct: 311 YFVSDRGGSPQV-----YRVAASGGGAERVTF---NGSYNI------SPSISPDGQWLAY 356
Query: 559 TANLGA-----VM------------------------AEPVSWPNQFQPYGDLYVVKLDG 589
+ +G VM + + + Q Q L LDG
Sbjct: 357 ISRVGGAYKLHVMDFKSGSVTAVTDTSADENPSFAPNSRLIVYATQQQGREALMTTTLDG 416
Query: 590 SGLRRLTWNGYENGTPAWHP 609
RL G + P W P
Sbjct: 417 KIKARLAGQGGDIREPDWGP 436
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 32/172 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ +P G L + S S ++V D G R + + ++ P+WSP G +A
Sbjct: 213 PAWAPTGTQLAYVSFESRKPVVYVHDVATGRR----RLIANFRGSNSAPAWSPDGRTLAV 268
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ +R LY I +G RR+ + SG +D E + FS+DG + F +
Sbjct: 269 TLSRDGGSQ-----LYTIDANGGEPRRLM----QSSG-IDTEPV----FSSDGRSIYFVS 314
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQ 612
+ G P +Y V G G R+T+NG N +P+ P Q
Sbjct: 315 DRGG---SP-----------QVYRVAASGGGAERVTFNGSYNISPSISPDGQ 352
>gi|160874900|ref|YP_001554216.1| translocation protein TolB [Shewanella baltica OS195]
gi|378708148|ref|YP_005273042.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Shewanella baltica OS678]
gi|189035987|sp|A9KY50.1|TOLB_SHEB9 RecName: Full=Protein TolB; Flags: Precursor
gi|160860422|gb|ABX48956.1| Tol-Pal system beta propeller repeat protein TolB [Shewanella
baltica OS195]
gi|315267137|gb|ADT93990.1| Tol-Pal system beta propeller repeat protein TolB [Shewanella
baltica OS678]
Length = 442
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 24/177 (13%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHV 387
+L G +F +V NH + + +A DG L++ + +WSP + +
Sbjct: 167 KLTGIRGAFLTRISYVVVNHTQKAPYQLMVADYDGVNEQMLLRSPEPLMSPTWSPDGRRL 226
Query: 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
Y S F++++A + + +++ V+ G N P+ SPDG
Sbjct: 227 AYVS----FENKKAEIFV---------------QDLYTQVRTKVSSFPGINGAPAFSPDG 267
Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
K L + G ++++D I+++T+ IDT PSW P G + F+S R
Sbjct: 268 KSLAITLSKDGQPEIYIIDIATKA----IKRITNHYAIDTEPSWYPDGKSLIFTSER 320
>gi|345298392|ref|YP_004827750.1| protein tolB [Enterobacter asburiae LF7a]
gi|345092329|gb|AEN63965.1| Protein tolB [Enterobacter asburiae LF7a]
Length = 430
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 92/200 (46%), Gaps = 30/200 (15%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++++ DG ++T+ + + +WSP + Y + F+S R+ + I +S
Sbjct: 182 LRVSDYDGYNQFTVHRSAQPLMSPAWSPDGSKLAYVT----FESGRSALVIQTLS----- 232
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ ++ + +N PS SPDG L F ++G NL+V+D +G+
Sbjct: 233 --NGAVRQVASFPR--------HNGAPSFSPDGSKLAFALSKTGSLNLYVMDIGSGQ--- 279
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
IRQ+TDG +T P+W P +AF+S D +Y + +G +RI G +
Sbjct: 280 -IRQVTDGRSNNTEPTWFPDSQNLAFTS-----DQAGRPQIYKVNVNGGAPQRISWEGTQ 333
Query: 535 G-SGDVDRERINHVCFSADG 553
+ DV + V S++G
Sbjct: 334 NQNADVSSDGKFMVMVSSNG 353
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + PS+SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLSNGA----VRQVASFPRHNGAPSFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ GSG + R+ + + + W +
Sbjct: 261 ALSKTG-----SLNLYVMD--------------IGSGQI-RQVTDGRSNNTEPTWFPDSQ 300
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
NL A ++ P +Y V ++G +R++W G +N
Sbjct: 301 NL-AFTSDQAGRPQ-------IYKVNVNGGAPQRISWEGTQN 334
>gi|317491197|ref|ZP_07949633.1| tol-Pal system beta propeller repeat protein TolB
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920744|gb|EFV42067.1| tol-Pal system beta propeller repeat protein TolB
[Enterobacteriaceae bacterium 9_2_54FAA]
Length = 430
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 37/179 (20%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F +SG NL+V+D +G IRQ+TDG +T PSW P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKSGSLNLYVMDLGSGA----IRQVTDGRSNNTEPSWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS-GDVDRERINHVCFSADGEW 555
+AF+S++ + Y + +G R+ G + GDV S+DG++
Sbjct: 301 NLAFTSDQGGRPQI-----YKVNINGGAPERLTWEGSQNQDGDV----------SSDGKF 345
Query: 556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLD-GSGLRRLTWNGYENGTPAWHPGNQL 613
L+ G G ++ KLD GS ++ + + + TP+ P +
Sbjct: 346 LVMVGTSG----------------GSQHITKLDLGSNANQVLTSTFLDETPSIAPNGTM 388
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG K+ V+ ++ NG IRQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESG-KSALVIQTLS---NGAIRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKSG-----SLNLYVMDLGSGAIRQVTDG---------RSNNTEPSWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ G +P +Y V ++G RLTW G +N
Sbjct: 307 DQGG------------RP--QIYKVNINGGAPERLTWEGSQN 334
>gi|126173975|ref|YP_001050124.1| translocation protein TolB [Shewanella baltica OS155]
gi|386340736|ref|YP_006037102.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Shewanella baltica OS117]
gi|166988081|sp|A3D3E2.1|TOLB_SHEB5 RecName: Full=Protein TolB; Flags: Precursor
gi|125997180|gb|ABN61255.1| TolB, N-terminal domain protein [Shewanella baltica OS155]
gi|334863137|gb|AEH13608.1| Tol-Pal system beta propeller repeat protein TolB [Shewanella
baltica OS117]
Length = 442
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 24/177 (13%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHV 387
+L G +F +V NH + + +A DG L++ + +WSP + +
Sbjct: 167 KLTGIRGAFLTRISYVVVNHTQKAPYQLMVADYDGVNEQMLLRSPEPLMSPTWSPDGRRL 226
Query: 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
Y S F++++A + + +++ V+ G N P+ SPDG
Sbjct: 227 AYVS----FENKKAEIFV---------------QDLYTQVRTKVSSFPGINGAPAFSPDG 267
Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
K L + G ++++D I+++T+ IDT PSW P G + F+S R
Sbjct: 268 KSLAITLSKDGQPEIYIIDIATKA----IKRITNHYAIDTEPSWYPDGKSLIFTSER 320
>gi|121594093|ref|YP_985989.1| translocation protein TolB [Acidovorax sp. JS42]
gi|120606173|gb|ABM41913.1| TolB, N-terminal domain protein [Acidovorax sp. JS42]
Length = 443
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 95/260 (36%), Gaps = 66/260 (25%)
Query: 379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN 438
+W+PT + Y S F+S + V + ++ + L G+N
Sbjct: 217 AWAPTGTQLAYVS----FESRKPVVYV---------------HDVATGRRRLIANFRGSN 257
Query: 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
+ P+ SPDG+ L R G L+ +DA NG G+ R+L IDT P +S G I
Sbjct: 258 SAPAWSPDGRTLAVTLSRDGGSQLYTIDA-NG---GEPRRLMQSSGIDTEPVFSSDGRSI 313
Query: 499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLF 558
F S+R V Y + G G R+ GS ++ S DG+WL +
Sbjct: 314 YFVSDRGGSPQV-----YRVAASGGGAERVTF---NGSYNI------SPSISPDGQWLAY 359
Query: 559 TANLGA-----VM------------------------AEPVSWPNQFQPYGDLYVVKLDG 589
+ +G VM + + + Q Q L LDG
Sbjct: 360 ISRVGGAYKLHVMDLKSGSVTAVTDTSADENPSFAPNSRLIVYATQQQGREALMTTTLDG 419
Query: 590 SGLRRLTWNGYENGTPAWHP 609
RL G + P W P
Sbjct: 420 KIKARLAGQGGDIREPDWGP 439
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 32/172 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ +P G L + S S ++V D G R + + ++ P+WSP G +A
Sbjct: 216 PAWAPTGTQLAYVSFESRKPVVYVHDVATGRR----RLIANFRGSNSAPAWSPDGRTLAV 271
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ +R LY I +G RR+ + SG +D E + FS+DG + F +
Sbjct: 272 TLSRDGGSQ-----LYTIDANGGEPRRLM----QSSG-IDTEPV----FSSDGRSIYFVS 317
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQ 612
+ G P +Y V G G R+T+NG N +P+ P Q
Sbjct: 318 DRGG---SP-----------QVYRVAASGGGAERVTFNGSYNISPSISPDGQ 355
>gi|117920972|ref|YP_870164.1| translocation protein TolB [Shewanella sp. ANA-3]
gi|166988085|sp|A0KY89.1|TOLB_SHESA RecName: Full=Protein TolB; Flags: Precursor
gi|117613304|gb|ABK48758.1| TolB, N-terminal domain protein [Shewanella sp. ANA-3]
Length = 442
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 24/177 (13%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHV 387
+L G +F +V NH + + IA DG L++ + SWSP + +
Sbjct: 167 KLTGIRGAFLTRISYVVVNHTQKAAYSLMIADYDGYNEQMLLRSPEPLMSPSWSPDGRRL 226
Query: 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
Y S F++++A + + +++ V+ G N P+ SPDG
Sbjct: 227 AYVS----FENKKAEIFV---------------QDLYTQVRTKVSSFPGINGAPTFSPDG 267
Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
K L + G ++V+D +++T+ IDT PSW P G + F+S R
Sbjct: 268 KSLAVTLSKDGQPEIYVIDIATKA----AKRITNHYSIDTEPSWYPDGKSLLFTSER 320
>gi|407689261|ref|YP_006804434.1| amidohydrolase [Alteromonas macleodii str. 'Balearic Sea AD45']
gi|407292641|gb|AFT96953.1| amidohydrolase [Alteromonas macleodii str. 'Balearic Sea AD45']
Length = 1111
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 10/126 (7%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMPSWSPKGD 496
N PS SPDGK + F S + G N++V+D ++G ++RQ+T + + P WSP G+
Sbjct: 103 NIHPSISPDGKHIAFISDKDGLSNVWVMD-IDGS---NLRQVTKEKSNLIHSPKWSPDGE 158
Query: 497 LIAFSSNRHNPDNVEAFSLYVI-KPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW 555
+ + + ++ A +++ K G GL+ SG D++ I FS DG++
Sbjct: 159 YLVVTKGIMSSRSIPAGEIWMYHKSGGDGLQ----IKARNSGKRDQQNIADPVFSHDGKY 214
Query: 556 LLFTAN 561
+ FT N
Sbjct: 215 IYFTEN 220
>gi|114562639|ref|YP_750152.1| translocation protein TolB [Shewanella frigidimarina NCIMB 400]
gi|122941016|sp|Q084K1.1|TOLB_SHEFN RecName: Full=Protein TolB; Flags: Precursor
gi|114333932|gb|ABI71314.1| TolB, N-terminal domain protein [Shewanella frigidimarina NCIMB
400]
Length = 442
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 110/302 (36%), Gaps = 49/302 (16%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHV 387
+L G +F +V + + IA DG L++ + +WSP + +
Sbjct: 167 KLTGIRGAFLTRIAYVVVKQGQKAPYHLMIADYDGYNEQMLLRSPEPLMSPTWSPDGRRL 226
Query: 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
Y S F++ +A + + ++I + L G N P+ SPDG
Sbjct: 227 AYVS----FENRKAEIFV---------------QDIYSQTRTLVSSFDGINGAPAFSPDG 267
Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP 507
K L + G ++V+D R++T+ IDT PSW P G I F+S R
Sbjct: 268 KKLAVTLSKDGQPEIYVVDIATKA----TRRITEHYAIDTEPSWFPDGKSILFTSERGGK 323
Query: 508 DNVEAFSLYVIKPDGSGLRRIHVAG---------PEGSGDVDRERIN---HVCFSADGEW 555
LY + D + + R+ G P+G + R N H+
Sbjct: 324 PQ-----LYRVSLDTNKVSRMTFEGEWNLGGSISPDGRSMIFVNRTNGKFHIARMDLATR 378
Query: 556 LLFTANLGAVMAEPVSWPN-QFQPYGD-------LYVVKLDGSGLRRLTWNGYENGTPAW 607
+ + + P PN YG L V +DG RL E +PAW
Sbjct: 379 FMQVLSSTQLDESPSVAPNGTMVIYGTTHQGKQVLAAVSMDGRFKARLPVGQGEVKSPAW 438
Query: 608 HP 609
P
Sbjct: 439 SP 440
>gi|406908193|gb|EKD48773.1| WD40 protein [uncultured bacterium]
Length = 197
Score = 55.8 bits (133), Expect = 7e-05, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 27/140 (19%)
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI-HVAGP 533
D++ LT GP D ++SP G I F+SNR N LY + DGS ++++ H
Sbjct: 12 DLKALTSGPAYDAECAYSPDGSRIVFASNRSGHMN-----LYTMAADGSDIQQVTHTTAS 66
Query: 534 EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR 593
G FS DG +++ A+ + Q Y +Y + + G +
Sbjct: 67 YNGGPF---------FSPDGTQIIYRADY------------EKQHYLQIYCIDIHGMHTQ 105
Query: 594 RLTWNGYENGTPAWHPGNQL 613
++T NG N P WHP ++
Sbjct: 106 QITMNGAVNWAPFWHPNGKV 125
>gi|383501912|ref|YP_005415271.1| translocation protein TolB [Rickettsia australis str. Cutlack]
gi|378932923|gb|AFC71428.1| translocation protein TolB [Rickettsia australis str. Cutlack]
Length = 444
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 126/301 (41%), Gaps = 37/301 (12%)
Query: 298 YHRFRGESTEGQSTIPHLEPVAS--PVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG 355
Y + G++ + I ++ S +K + ++ +G+ + +G +V F +A
Sbjct: 152 YEKITGDTGYFDTKIVYVSESTSLPKIKRIALMDYDGANNKYLTNGKSLVLTPRFARSAD 211
Query: 356 IKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS 415
S +KR L+ Y T K I I + R + + + +
Sbjct: 212 KIFYVSYATKRRALV------YEKDLKTGKESIVGDFSGISFAPRFSPDGKKAVMSIAKN 265
Query: 416 DDNNREEIPCDVKILTK--EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
+ EI K L K + G N PS SPDGK +V+ S R+G L+++++ +G
Sbjct: 266 GSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGKKIVYNSDRNGVPQLYIMNS-DGS-- 322
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP---DGSGLRRIHV 530
D+++++ G T PSWSP+GD IAF+ + + F++ ++K D RI
Sbjct: 323 -DVQRISFGGGSYTTPSWSPRGDYIAFTKIIRGAEG-KTFNIGIMKACPQDDENSERIIT 380
Query: 531 AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590
+G + C+S +G ++F WP+ + G + +D +
Sbjct: 381 SG---------YLVESPCWSPNGRVIMFAKG----------WPSSAKAPGKNKIFAIDLT 421
Query: 591 G 591
G
Sbjct: 422 G 422
>gi|346991827|ref|ZP_08859899.1| translocation protein TolB [Ruegeria sp. TW15]
Length = 439
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 103/237 (43%), Gaps = 57/237 (24%)
Query: 380 WSPTEKHVIYTS--TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGN 437
+SPT ++YTS TG Q + + RV R+E+P + G
Sbjct: 212 FSPTGDRLLYTSYETG---QPRIYVLDVGRV----------KRQELPT--------QEGT 250
Query: 438 NAF-PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+F P SPDG+ +V+ + G+ +L+ +D +G+ +R LT+ P I+T PS+SP G
Sbjct: 251 MSFSPRFSPDGRSIVYSLTQGGNTDLWKMDLASGQ---SVR-LTNTPAIETAPSYSPDGG 306
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
I F S+R LY++ +G RI G G R +S G+ +
Sbjct: 307 QIVFESDRSGTPQ-----LYIMPANGGEATRISF----GQG-----RYGTPVWSPRGDLI 352
Query: 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
FT Q + + V++ DGS R LT + + G P W P ++
Sbjct: 353 AFT--------------KQNKGRFHIGVMRTDGSEERLLTASFLDEG-PTWSPNGRV 394
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 13/138 (9%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG +VF S RSG L+++ A GE +++ G P WSP+GDLIAF
Sbjct: 299 PSYSPDGGQIVFESDRSGTPQLYIMPANGGEAT----RISFGQGRYGTPVWSPRGDLIAF 354
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA----GPEGSGDVDRERINHVCFSADGEWL 556
+ N F + V++ DGS R + + GP S + A G
Sbjct: 355 TKQ-----NKGRFHIGVMRTDGSEERLLTASFLDEGPTWSPNGRVIMFTRETQGAGGRST 409
Query: 557 LFTANLGAVMAEPVSWPN 574
L++ ++ PV P+
Sbjct: 410 LYSVDISGRNLRPVRTPD 427
>gi|301058341|ref|ZP_07199374.1| putative Tol-Pal system beta propeller repeat protein TolB [delta
proteobacterium NaphS2]
gi|300447577|gb|EFK11309.1| putative Tol-Pal system beta propeller repeat protein TolB [delta
proteobacterium NaphS2]
Length = 205
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 35/189 (18%)
Query: 423 IPCDVKILTK--EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT 480
I KIL + E G + P+ SPDG L F S RSG +++L+ +G + +LT
Sbjct: 49 IDLQGKILRQLVEHWGIDVSPAFSPDGTKLAFVSNRSGSPQIYLLEISSGR----VDRLT 104
Query: 481 DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVD 540
+T P+WS + IAF F ++ + PDGSG++R+ D
Sbjct: 105 YEGSYNTSPAWSAL-NRIAFVGKTDG-----HFDIFTMAPDGSGMKRL---------TAD 149
Query: 541 RERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGY 600
C+S DG ++ F+++ +Y++ +G RR+T+
Sbjct: 150 SGNNEDPCWSPDGRYIAFSSDRTGAY--------------HIYMMNANGRTQRRITFEKG 195
Query: 601 ENGTPAWHP 609
+ +P+W P
Sbjct: 196 KQTSPSWGP 204
Score = 39.7 bits (91), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 43/170 (25%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK------DRTAFYNSWSPTEKHVI 388
P+FSPDG + F ++ GS + L++ DR + S+
Sbjct: 69 PAFSPDGTKLAF-----------VSNRSGSPQIYLLEISSGRVDRLTYEGSY-------- 109
Query: 389 YTSTGPIFQSERATVQIARVSFQLD----PSDDNNREEIPCDVKILTKEETGNNAFPSCS 444
+T P + + + + D D + + + D +GNN P S
Sbjct: 110 --NTSPAWSALNRIAFVGKTDGHFDIFTMAPDGSGMKRLTAD--------SGNNEDPCWS 159
Query: 445 PDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
PDG+++ F S R+G ++++++A NG R++T T PSW P+
Sbjct: 160 PDGRYIAFSSDRTGAYHIYMMNA-NGRTQ---RRITFEKGKQTSPSWGPQ 205
>gi|410863234|ref|YP_006978468.1| amidohydrolase [Alteromonas macleodii AltDE1]
gi|410820496|gb|AFV87113.1| amidohydrolase [Alteromonas macleodii AltDE1]
Length = 1111
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 10/126 (7%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMPSWSPKGD 496
N PS SPDGK + F S + G N++V+D ++G ++RQ+T + + P WSP G+
Sbjct: 103 NIHPSISPDGKHIAFISDKDGLSNVWVMD-IDGS---NLRQVTKEKSNLIHSPKWSPDGE 158
Query: 497 LIAFSSNRHNPDNVEAFSLYVI-KPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW 555
+ + + ++ A +++ K G GL+ SG D++ I FS DG++
Sbjct: 159 YLVVTKGIMSSRSIPAGEIWMYHKSGGDGLQ----IKARNSGKRDQQNIADPVFSHDGKY 214
Query: 556 LLFTAN 561
+ FT N
Sbjct: 215 IYFTEN 220
Score = 42.4 bits (98), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 30/191 (15%)
Query: 407 RVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLD 466
+ ++LD D +N +V I T E T ++ +P+G+F+VF +L+ ++
Sbjct: 34 KTEYELDNWDVSNPPYALNEVTIKTNETTWSSL--DVAPNGEFMVFDM----LGDLYKVN 87
Query: 467 AVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526
+NG GD LT + PS SP G IAF S++ NV +V+ DGS LR
Sbjct: 88 -MNG---GDATPLTQDFAWNIHPSISPDGKHIAFISDKDGLSNV-----WVMDIDGSNLR 138
Query: 527 RIHVAGPEGSGDVDRERINHV---CFSADGEWLLFTANLGAVMAEPVSWPNQFQPY-GDL 582
+ V +E+ N + +S DGE+L+ T + + + P + GD
Sbjct: 139 Q-----------VTKEKSNLIHSPKWSPDGEYLVVTKGIMSSRSIPAGEIWMYHKSGGDG 187
Query: 583 YVVKLDGSGLR 593
+K SG R
Sbjct: 188 LQIKARNSGKR 198
>gi|440288478|ref|YP_007341243.1| tol-pal system beta propeller repeat protein TolB
[Enterobacteriaceae bacterium strain FGI 57]
gi|440048000|gb|AGB79058.1| tol-pal system beta propeller repeat protein TolB
[Enterobacteriaceae bacterium strain FGI 57]
Length = 430
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDIGSGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNVNGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSNG 353
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLSNGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ GSG + R+ + + + W +
Sbjct: 261 ALSKTG-----SLNLYVMD--------------IGSGQI-RQVTDGRSNNTEPTWFPDSQ 300
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
NL A ++ P +Y V ++G +R+TW G +N
Sbjct: 301 NL-AFTSDQAGRPQ-------VYKVNVNGGAPQRITWEGSQN 334
>gi|332142931|ref|YP_004428669.1| amidohydrolase [Alteromonas macleodii str. 'Deep ecotype']
gi|332143024|ref|YP_004428762.1| amidohydrolase [Alteromonas macleodii str. 'Deep ecotype']
gi|327552953|gb|AEA99671.1| amidohydrolase [Alteromonas macleodii str. 'Deep ecotype']
gi|327553046|gb|AEA99764.1| amidohydrolase [Alteromonas macleodii str. 'Deep ecotype']
Length = 1111
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 10/126 (7%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMPSWSPKGD 496
N PS SPDGK + F S + G N++V+D ++G ++RQ+T + + P WSP G+
Sbjct: 103 NIHPSISPDGKHIAFISDKDGLSNVWVMD-IDGS---NLRQVTKEKSNLIHSPKWSPDGE 158
Query: 497 LIAFSSNRHNPDNVEAFSLYVI-KPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW 555
+ + + ++ A +++ K G GL+ SG D++ I FS DG++
Sbjct: 159 YLVVTKGIMSSRSIPAGEIWMYHKSGGDGLQ----IKARNSGKRDQQNIADPVFSHDGKY 214
Query: 556 LLFTAN 561
+ FT N
Sbjct: 215 IYFTEN 220
Score = 42.4 bits (98), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 30/191 (15%)
Query: 407 RVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLD 466
+ ++LD D +N +V I T E T ++ +P+G+F+VF +L+ ++
Sbjct: 34 KTEYELDNWDVSNPPYALNEVTIKTNETTWSSL--DVAPNGEFMVFDM----LGDLYKVN 87
Query: 467 AVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526
+NG GD LT + PS SP G IAF S++ NV +V+ DGS LR
Sbjct: 88 -MNG---GDATPLTQDFAWNIHPSISPDGKHIAFISDKDGLSNV-----WVMDIDGSNLR 138
Query: 527 RIHVAGPEGSGDVDRERINHV---CFSADGEWLLFTANLGAVMAEPVSWPNQFQPY-GDL 582
+ V +E+ N + +S DGE+L+ T + + + P + GD
Sbjct: 139 Q-----------VTKEKSNLIHSPKWSPDGEYLVVTKGIMSSRSIPAGEIWMYHKSGGDG 187
Query: 583 YVVKLDGSGLR 593
+K SG R
Sbjct: 188 LQIKARNSGKR 198
>gi|410610718|ref|ZP_11321826.1| TolB protein [Glaciecola psychrophila 170]
gi|410169675|dbj|GAC35715.1| TolB protein [Glaciecola psychrophila 170]
Length = 456
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 29/188 (15%)
Query: 351 ELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVS 409
EL + +A DG+ TL++ R + SWSP + Y S F+++R + I
Sbjct: 202 ELPFQLVVADYDGANETTLLRSREPLMSPSWSPDGTKLAYVS----FENKRPQIFI---- 253
Query: 410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN 469
++I + +G N P SPDGK L + G+ ++V++ +
Sbjct: 254 -----------QDIYTMSRTQMTSFSGINGSPKFSPDGKTLALVLSKDGNPEIYVMNIAS 302
Query: 470 GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH 529
+ +R++T IDT PSW+P + FSS R + Y + + +RR+
Sbjct: 303 KQ----LRRVTKNRAIDTEPSWTPDSQSLIFSSERGGKPQI-----YRVNLESGKVRRLT 353
Query: 530 VAGPEGSG 537
G G
Sbjct: 354 FEGEMNLG 361
>gi|373458688|ref|ZP_09550455.1| peptidase S41 [Caldithrix abyssi DSM 13497]
gi|371720352|gb|EHO42123.1| peptidase S41 [Caldithrix abyssi DSM 13497]
Length = 1087
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 9/119 (7%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G FP SPDG + F G+ +++V++A + IR++T P D + W P
Sbjct: 65 GEETFPKFSPDGSMIAFTGEYDGNSDVYVMNADGSQ----IRRVTFHPGGDLVVGWHPTK 120
Query: 496 DLIAFSSNRHNPDNVEAFS-LYVIKPDGSGLRRIHV-AGPEGSGDVDRERINHVCFSAD 552
+ I F SNR + + FS L++IKPDGSGL + + +GS D ++I + S +
Sbjct: 121 NKIIFRSNRL---SYQRFSRLFMIKPDGSGLETLIMHEAAQGSFSPDGQKIAYNRLSRE 176
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTS 391
+FP FSPDG +I F +++ N+ + + +DGS+ R W PT+ +
Sbjct: 68 TFPKFSPDGSMIAFTGEYDGNSDVYVMNADGSQIRRVTFHPGGDLVVGWHPTKNKI---- 123
Query: 392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451
IF+S R + Q F + P ++ L E +F SPDG+ +
Sbjct: 124 ---IFRSNRLSYQRFSRLFMIKPDGSG--------LETLIMHEAAQGSF---SPDGQKIA 169
Query: 452 F----RSGRSGHK-------NLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
+ R R+ + +L++ D + ++TD P D +P W G+ I F
Sbjct: 170 YNRLSREFRTWKRYFGGTAQDLYIFDFEQMK----DEKITDFPGTDRLPMWI--GNEIYF 223
Query: 501 SSNRHNPDNVEAFSL 515
SS+R N+ A +
Sbjct: 224 SSDRDGVLNIYALDV 238
>gi|440227749|ref|YP_007334840.1| translocation protein TolB [Rhizobium tropici CIAT 899]
gi|440039260|gb|AGB72294.1| translocation protein TolB [Rhizobium tropici CIAT 899]
Length = 434
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 73/175 (41%), Gaps = 33/175 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + IDT PS+SP G +AF
Sbjct: 251 PRFSPDGQRVIMSLQQEGNANIYTMDLRSRTTTRLTSTAA----IDTSPSYSPDGTQVAF 306
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGS RRI G+G +S G+ + FT
Sbjct: 307 ESDRGGQPQI-----YVMNADGSNQRRISF----GNGSYSTP-----VWSPRGDLIAFTK 352
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDL 615
G + + V+K DGSG R LT Y G P W P ++ +
Sbjct: 353 RAGGNFS--------------IGVMKPDGSGERILTSGSYSEG-PTWAPNGRVIM 392
>gi|357385484|ref|YP_004900208.1| TolB protein [Pelagibacterium halotolerans B2]
gi|351594121|gb|AEQ52458.1| TolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins
[Pelagibacterium halotolerans B2]
Length = 438
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 74/173 (42%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ LVF N++ +D G+ +QLT G IDT PS+SP G + F
Sbjct: 255 PRFSPDGRRLVFSVTNGAVTNIYAMDLAGGQ----PQQLTTGSAIDTSPSYSPDGQRLTF 310
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ G G RI +GS + +S G+ + FT
Sbjct: 311 ESDRGGRPQI-----YVMSAAGGGAERISYG--DGS-------YSTPVWSPKGDLIAFTR 356
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + ++ DGSG R L + + G P W P ++
Sbjct: 357 QSG----------GQF----SIGIMGPDGSGERILATSYHAEG-PTWAPNGRV 394
>gi|373949126|ref|ZP_09609087.1| Protein tolB [Shewanella baltica OS183]
gi|386325036|ref|YP_006021153.1| protein tolB [Shewanella baltica BA175]
gi|333819181|gb|AEG11847.1| Protein tolB [Shewanella baltica BA175]
gi|373885726|gb|EHQ14618.1| Protein tolB [Shewanella baltica OS183]
Length = 442
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 24/177 (13%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHV 387
+L G +F +V NH + + +A DG L++ + +WSP + +
Sbjct: 167 KLTGIRGAFLTRISYVVVNHTQKAPYQLMVADYDGVNEQMLLRSPEPLMSPTWSPDGRRL 226
Query: 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
Y S F++++A + + +++ V+ G N P+ SPDG
Sbjct: 227 AYVS----FENKKAEIFV---------------QDLYTQVRTKVSSFPGINGAPAFSPDG 267
Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
K L + G ++++D I+++T+ IDT PSW P G + F+S R
Sbjct: 268 KSLAVTLSKDGQPEIYIIDIATKA----IKRITNHYAIDTEPSWYPDGKSLIFTSER 320
>gi|374850946|dbj|BAL53921.1| hypothetical protein HGMM_F11C09C29 [uncultured prokaryote]
Length = 628
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 32/203 (15%)
Query: 333 SFPSFSPDGGLIVFNH-DFELNAGIKIAKSDGSKRWTLI-KDRTAFYNSWSPTEKHVIYT 390
S P++SPDG + + D + I I +DGS + K R + +WSP++ + YT
Sbjct: 442 SHPTWSPDGTRLAYAAPDDQGEWTIYIINADGSGPPRAVGKGR---WPAWSPSQS-LAYT 497
Query: 391 STGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFL 450
+R+ + + +P D + D+ N+ + SPDG ++
Sbjct: 498 GC------DRSG-RFCGIFSDSNPDDPAPAVRLTADI---------NDIGLAWSPDGMYI 541
Query: 451 VFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV 510
+ S SG+ ++ ++ G + LT P D +P+W+P G +AF S+R
Sbjct: 542 AYMSNHSGNWEVYTVN-----IWGGVTLLTHDPANDGLPAWAPDGSALAFISDRDG---- 592
Query: 511 EAFSLYVIKPDGSGLRRIHVAGP 533
A+ +Y+++PDGS R++ GP
Sbjct: 593 -AWGIYLMQPDGSQQRKLLDLGP 614
>gi|340788589|ref|YP_004754054.1| periplasmic protein involved in uptake [Collimonas fungivorans
Ter331]
gi|340553856|gb|AEK63231.1| periplasmic protein involved in uptake [Collimonas fungivorans
Ter331]
Length = 427
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 106/284 (37%), Gaps = 67/284 (23%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A SDG ++ + +WSP V Y S F++++ V +
Sbjct: 178 LEVADSDGEGTQVALRSNEPIISPAWSPDGTKVAYVS----FEAKKPVVYV--------- 224
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ + +I+ G+N+ PS SPDG L R G ++V VN + G
Sbjct: 225 ------QNLITKQRIVVANYKGSNSAPSWSPDGSKLAIALARDGLTQVYV---VNSD-GG 274
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY-----------------V 517
+R+LT IDT P +S G I F+S+R + S
Sbjct: 275 GLRRLTQTNGIDTEPQFSADGQNIYFTSDRSGGPQIYKMSASGGDAQRVTFGGTYNISPR 334
Query: 518 IKPDGSGLRRIHVAGPE------GSGDVDRERINHVC------FSADGEWLLFTANLGAV 565
I PDG L I G + +R++ FS +G+++++ G
Sbjct: 335 ISPDGKTLAYISQRGGRFQLYALDLTNGQEQRLSDTVKDESPSFSPNGKYIMYATESG-- 392
Query: 566 MAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G L VV +DG +RLT + P W P
Sbjct: 393 ------------RRGSLAVVSVDGRVKQRLTMQAGDIREPTWGP 424
>gi|365097023|ref|ZP_09331371.1| translocation protein TolB [Acidovorax sp. NO-1]
gi|363413644|gb|EHL20838.1| translocation protein TolB [Acidovorax sp. NO-1]
Length = 314
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 103/273 (37%), Gaps = 66/273 (24%)
Query: 379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN 438
+WSPT + Y S F+S + V + V+ R + + + G+N
Sbjct: 88 AWSPTGGQLAYVS----FESRKPVVYVHDVA--------TGRRRLIANFR-------GSN 128
Query: 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
+ PS +PDG+ L R G L+ +DA GE R+L P IDT P +S G I
Sbjct: 129 SAPSWAPDGRSLAVTLSRDGGSQLYTIDANGGE----PRRLMQSPGIDTEPVFSSDGRSI 184
Query: 499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLF 558
F S+R A +Y + G R+ G S DG WL +
Sbjct: 185 FFVSDRGG-----APQIYRVGASGGNAERVTFTGTYNI---------SPSISPDGRWLAY 230
Query: 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL----- 613
+ +G L+V++L + LT + + P++ P ++L
Sbjct: 231 ISRVGGAF--------------KLHVMELSSGNVTALT-DTTADENPSFAPNSRLIVYAT 275
Query: 614 ------DLGKLRLEDDIGDKLRGQ---FDEPLW 637
L L+ I +L GQ EP W
Sbjct: 276 QQQGREALMTTTLDGKIKARLAGQAGDIREPDW 308
>gi|294508417|ref|YP_003572475.1| hypothetical protein SRM_02602 [Salinibacter ruber M8]
gi|294344745|emb|CBH25523.1| conserved hypothetical protein, secreted [Salinibacter ruber M8]
Length = 1065
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 33/179 (18%)
Query: 438 NAFPSCSPDGKFLVFRSGRSG-HKNLFVLDAVNGEFNGDIRQLTDGP------WIDTMPS 490
N P+ SPDG+++ F S R+ + NLFV DA GE ++ P +I++ +
Sbjct: 332 NISPAVSPDGRYVAFISRRNLFNTNLFVADAETGEIVQELEGTRSNPHFDALRFINSAGA 391
Query: 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS 550
WSP G AF + + + F++ +G R A E G I+++ +S
Sbjct: 392 WSPDGRRFAFITFADGRNEINTFNVQ------TGEIRTRTA-VENVGA-----IHNLAWS 439
Query: 551 ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
DG+ + F+ G + DLYV LD +R+LT + Y P W P
Sbjct: 440 PDGQSIAFSGLEGGL--------------SDLYVYDLDQKNVRQLTNDRYAALQPTWSP 484
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503
SPDG+ + F G +L+V D ++RQLT+ + P+WSP G+ +AF+++
Sbjct: 439 SPDGQSIAFSGLEGGLSDLYVYDLDQK----NVRQLTNDRYAALQPTWSPDGETLAFTTD 494
Query: 504 R 504
R
Sbjct: 495 R 495
>gi|157369522|ref|YP_001477511.1| translocation protein TolB [Serratia proteamaculans 568]
gi|166988079|sp|A8GB93.1|TOLB_SERP5 RecName: Full=Protein TolB; Flags: Precursor
gi|157321286|gb|ABV40383.1| Tol-Pal system beta propeller repeat TolB [Serratia proteamaculans
568]
Length = 430
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 19/129 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F +SG NL+V++ +G+ I Q+TDG +T P+W P G
Sbjct: 245 HNGAPAFSPDGSRLAFALSKSGSLNLYVMNLGSGQ----ITQITDGRSNNTEPTWFPDGQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+A++S++ + Y + G +R+ EGS + D E S+DG++L
Sbjct: 301 SLAYTSDQGGRPQI-----YKVSASGGASQRLTW---EGSQNQDSE------VSSDGKFL 346
Query: 557 -LFTANLGA 564
+ ++N GA
Sbjct: 347 VMVSSNSGA 355
Score = 46.2 bits (108), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 67/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L V NG IRQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVVQTLANGA----IRQIASFPRHNGAPAFSPDGSRLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ + +I R + DG+ L +T+
Sbjct: 261 ALSKSG-----SLNLYVMNLGSGQITQITDG---------RSNNTEPTWFPDGQSLAYTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ G +P +Y V G +RLTW G +N
Sbjct: 307 DQGG------------RP--QIYKVSASGGASQRLTWEGSQN 334
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 28/178 (15%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN--SWSPTEKH 386
R NG+ P+FSPDG + F + + + GS + T I D + +W P +
Sbjct: 244 RHNGA-PAFSPDGSRLAFALSKSGSLNLYVMNL-GSGQITQITDGRSNNTEPTWFPDGQS 301
Query: 387 VIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD 446
+ YTS + QI +VS S + LT E + N S D
Sbjct: 302 LAYTS------DQGGRPQIYKVSASGGAS------------QRLTWEGS-QNQDSEVSSD 342
Query: 447 GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
GKFLV S SG +++ D +G Q+ G ++D PS +P G ++ +SS +
Sbjct: 343 GKFLVMVSSNSGAQHIAKQDLGSGAV-----QVLTGTFLDETPSIAPNGTMVIYSSTQ 395
>gi|156934765|ref|YP_001438681.1| translocation protein TolB [Cronobacter sakazakii ATCC BAA-894]
gi|156533019|gb|ABU77845.1| hypothetical protein ESA_02605 [Cronobacter sakazakii ATCC BAA-894]
Length = 431
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 18/129 (13%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 246 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDIGSGQ----IRQVTDGRSNNTEPTWYPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+A++S++ V Y + +G +R+ EGS + D + S+DG+++
Sbjct: 302 TLAYTSDQAGRPQV-----YKVNINGGAPQRVTW---EGSQNQDAD------ISSDGKFM 347
Query: 557 LFTANLGAV 565
+ ++ G
Sbjct: 348 VMVSSNGGA 356
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L +T+
Sbjct: 262 ALSKTG-----SLNLYVMDIGSGQIRQVTDG---------RSNNTEPTWYPDSQTLAYTS 307
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 308 DQAG------------RP--QVYKVNINGGAPQRVTWEGSQN 335
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 30/179 (16%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD-GSKRWTLIKDRTAFYN--SWSPTEK 385
R NG+ P+FSPDG + F + + D GS + + D + +W P +
Sbjct: 245 RHNGA-PAFSPDGSKLAFA--LSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWYPDSQ 301
Query: 386 HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP 445
+ YTS Q+ R Q+ +V N P V E N S
Sbjct: 302 TLAYTSD----QAGRP--QVYKV---------NINGGAPQRVTW----EGSQNQDADISS 342
Query: 446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
DGKF+V S G +N+ LD G Q ++D PS +P G ++ +SS++
Sbjct: 343 DGKFMVMVSSNGGAQNIAKLDLATGGV-----QTLSSTFLDETPSLAPNGTMVIYSSSQ 396
>gi|401676552|ref|ZP_10808536.1| translocation protein TolB [Enterobacter sp. SST3]
gi|400216236|gb|EJO47138.1| translocation protein TolB [Enterobacter sp. SST3]
Length = 430
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N PS SPDG L F ++G NL+V+D +G+ IRQ+TDG +T PSW P
Sbjct: 245 HNGAPSFSPDGSKLAFALSKTGSLNLYVMDIGSGQ----IRQVTDGRSNNTEPSWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEG-SGDVDRERINHVCFSADG 553
+AF+S D +Y + +G +RI G + + DV + V S++G
Sbjct: 301 NLAFTS-----DQAGRPQIYKVNINGGAPQRITWEGSQNQNSDVSSDGKFMVMVSSNG 353
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 32/175 (18%)
Query: 428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT 487
+ L K + P+ SPDG L + + SG L + NG +RQ+ P +
Sbjct: 192 QFLVKRSSQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNG 247
Query: 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV 547
PS+SP G +AF+ ++ + +LYV+ GSG + R+ +
Sbjct: 248 APSFSPDGSKLAFALSKTG-----SLNLYVMD--------------IGSGQI-RQVTDGR 287
Query: 548 CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ + W + NL A ++ P +Y V ++G +R+TW G +N
Sbjct: 288 SNNTEPSWFPDSQNL-AFTSDQAGRPQ-------IYKVNINGGAPQRITWEGSQN 334
>gi|294085866|ref|YP_003552626.1| TolB protein [Candidatus Puniceispirillum marinum IMCC1322]
gi|292665441|gb|ADE40542.1| TolB protein [Candidatus Puniceispirillum marinum IMCC1322]
Length = 431
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 71/173 (41%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P PDG L+ + G +++ +D I QLT IDT PS+SP G I F
Sbjct: 243 PRFGPDGDKLIMSLAKDGLTDIYEMDMRTQS----ITQLTKSASIDTSPSYSPDGKRIVF 298
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+S+R LYV+ DGS ++RI G G R +S G+ + FT
Sbjct: 299 NSDRGGSQQ-----LYVMNADGSNVKRISY----GDG-----RYATPVWSPRGDIVAFTK 344
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + V+ +DG+G RL G+ P W P ++
Sbjct: 345 MTGGTFY--------------IGVMNIDGTG-ERLLAQGFLVEGPTWAPNGRV 382
Score = 42.7 bits (99), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 11/141 (7%)
Query: 35 HEHR-LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFH 93
H HR LT+G + +F ++ +A+++ + P +Y +++TE L S P F
Sbjct: 184 HNHRYLTNGLDLVLTPRFSPTANE-VAYLNYFNEEPNVYLLDVFTARTERLGSFPGMTFA 242
Query: 94 DRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKF 153
R +KL A + + +Y D++ T+LT +D SPS S GK
Sbjct: 243 PRFGPDGDKLIMSLAKD-------GLTDIYEMDMRTQSITQLTKSASIDTSPSYSPDGKR 295
Query: 154 IAVASYESRPWPGEFHELNTD 174
I S R + + +N D
Sbjct: 296 IVFNS--DRGGSQQLYVMNAD 314
>gi|308049998|ref|YP_003913564.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Ferrimonas balearica DSM 9799]
gi|307632188|gb|ADN76490.1| Tol-Pal system beta propeller repeat protein TolB [Ferrimonas
balearica DSM 9799]
Length = 454
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 24/150 (16%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A DG L++ R + SWSP + + Y S F++ R+ + + + Q
Sbjct: 206 LRVADYDGYNETVLLRSREPLMSPSWSPDGRKLAYVS----FENRRSEIYVQDLYTQ--- 258
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
RE + G N PS SPDGK L + G ++ LD
Sbjct: 259 ----QRERVTS--------FAGINGSPSWSPDGKQLAMTLSKDGSSEIYTLDLATRA--- 303
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
++++T+ IDT P+W+P G + F+S R
Sbjct: 304 -LKRITNHYAIDTEPTWAPDGKSLVFTSER 332
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 36/161 (22%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG+ L + S + ++V D + ++T I+ PSWSP G +A
Sbjct: 229 PSWSPDGRKLAYVSFENRRSEIYVQDL----YTQQRERVTSFAGINGSPSWSPDGKQLAM 284
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRI--HVAGPEGSGDVDRERINHVCFSADGEWLLF 558
+ ++ + Y + L+RI H A +D E ++ DG+ L+F
Sbjct: 285 TLSKDGSSEI-----YTLDLATRALKRITNHYA-------IDTEP----TWAPDGKSLVF 328
Query: 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNG 599
T+ G +P +Y V LD ++RLT+ G
Sbjct: 329 TSERGG------------RP--QIYRVYLDSGRIQRLTFQG 355
>gi|261754105|ref|ZP_05997814.1| protein tolB [Brucella suis bv. 3 str. 686]
gi|261743858|gb|EEY31784.1| protein tolB [Brucella suis bv. 3 str. 686]
Length = 443
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 54/110 (49%), Gaps = 16/110 (14%)
Query: 431 TKEETGNNAF---PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT 487
T T N A S SPDG +VF S R G L+V+ G + R+++ G +
Sbjct: 291 TTRLTSNQAIDTGASYSPDGSQIVFTSDRGGRPQLYVM----GADGSNPRRISMGDGSYS 346
Query: 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGP 533
P WSP+GDLIAF+ FS+ V+K DGSG R + H GP
Sbjct: 347 TPVWSPRGDLIAFTKQSQG-----QFSIGVMKTDGSGERLLTSGFHNEGP 391
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 78/179 (43%), Gaps = 34/179 (18%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
G P SPDG+ +V + G N++ +D N +LT IDT S+SP
Sbjct: 254 GMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTT----RLTSNQAIDTGASYSPD 309
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
G I F+S+R LYV+ DGS RRI + +GS + +S G+
Sbjct: 310 GSQIVFTSDRGGRPQ-----LYVMGADGSNPRRISMG--DGS-------YSTPVWSPRGD 355
Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+ FT Q Q + V+K DGSG R LT +G+ N P W P ++
Sbjct: 356 LIAFT--------------KQSQGQFSIGVMKTDGSGERLLT-SGFHNEGPTWAPNGRV 399
>gi|441168659|ref|ZP_20969059.1| hypothetical protein SRIM_33931 [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440615564|gb|ELQ78749.1| hypothetical protein SRIM_33931 [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 363
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 129/315 (40%), Gaps = 93/315 (29%)
Query: 335 PSFSPDGGLI---VFNHDFELNAG----IKIAKSDGSKRWTLIKD------RTAFY---N 378
P+F+PDG + VF+ + A + +A DG T ++D R A +
Sbjct: 73 PAFAPDGKSLLFTVFHGGYNEGAAALRVLPLAHRDGRDSRTAVRDLLDEHDRAAVNLPGS 132
Query: 379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEI----PCDVKILTKEE 434
SW P S G F S+RA ++EI P E
Sbjct: 133 SWRP--------SAGVTFASDRA-----------------GKDEIWVLRPGGRPERVTEH 167
Query: 435 TGNNAF--PSCSPDGKFLVFR--------------SGRSGHKNLFVLDAVNGEFNGDIRQ 478
GN+ + PS SPDGK++VF+ + RS +L+ + E +
Sbjct: 168 PGNSGYLEPSFSPDGKWIVFQESVEREDPDEKAALADRSALGSLWKVRRDGTEQT----R 223
Query: 479 LTDGPWIDT---MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEG 535
L +GP T P+WSP+GD + F D A++LYV+ DGSG+R++ E
Sbjct: 224 LVNGPASRTDNREPNWSPRGDRLVFQRRELGSD---AWALYVMNADGSGVRKLTTVAGEH 280
Query: 536 SGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL 595
+ +S DG ++F++ G +A P ++V+ + G ++
Sbjct: 281 T---------DASWSPDGRSVVFSSTTGG-LALP-----------KIFVMPVSGGAPVQV 319
Query: 596 TWN-GYENGTPAWHP 609
T + G +G P+W P
Sbjct: 320 TRDPGTYDGAPSWSP 334
>gi|329113830|ref|ZP_08242601.1| Protein TolB [Acetobacter pomorum DM001]
gi|326696840|gb|EGE48510.1| Protein TolB [Acetobacter pomorum DM001]
Length = 454
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 35/174 (20%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ +V R+G +L+V+D +G RQ+T IDT P +SP G I F
Sbjct: 266 PRFSPDGRSVVLSVTRNGGSDLYVVDLASGSR----RQITSSGAIDTSPCFSPDGSQIVF 321
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSADGEWLLFT 559
+S+R + Y++ G G RRI G GS +S G+ + FT
Sbjct: 322 NSDRGGSPQI-----YIMPASGGGARRISYGQGTYGS----------PVWSPRGDLIAFT 366
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + L V+ DG+G R +T G+ +P++ P ++
Sbjct: 367 RIAGGMFS--------------LGVMAPDGTGERIMT-QGFTVESPSFCPNGRV 405
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 73/198 (36%), Gaps = 54/198 (27%)
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDN 509
+ RSG GH+ + AV + + R LT G W+ P +SP D IAF S +N
Sbjct: 185 FISRSGPRGHQRTRL--AVMDQDGANARMLTTGKWLTLTPRFSPVKDQIAFMSYANNRPR 242
Query: 510 VEAFSLY-----------------------------VIKPDGSGLRRIHVAGPE-----G 535
V F L V + GS L + +A
Sbjct: 243 VYLFDLTSGRQQILGEFEGISFAPRFSPDGRSVVLSVTRNGGSDLYVVDLASGSRRQITS 302
Query: 536 SGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL 595
SG +D CFS DG ++F ++ G P +Y++ G G RR+
Sbjct: 303 SGAID----TSPCFSPDGSQIVFNSDRG---GSP-----------QIYIMPASGGGARRI 344
Query: 596 TWNGYENGTPAWHPGNQL 613
++ G+P W P L
Sbjct: 345 SYGQGTYGSPVWSPRGDL 362
>gi|429082950|ref|ZP_19146004.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
condimenti 1330]
gi|426548260|emb|CCJ72045.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
condimenti 1330]
Length = 430
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 19/129 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDIGSGQ----IRQVTDGRSNNTEPTWYPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+A++S++ V Y + +G +R+ EGS + D + S+DG+++
Sbjct: 301 TLAYTSDQAGRPQV-----YKVNINGGAPQRVTW---EGSQNQDAD------ISSDGKFM 346
Query: 557 -LFTANLGA 564
+ ++N GA
Sbjct: 347 VMVSSNSGA 355
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 75/179 (41%), Gaps = 30/179 (16%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD-GSKRWTLIKDRTAFYN--SWSPTEK 385
R NG+ P+FSPDG + F + + D GS + + D + +W P +
Sbjct: 244 RHNGA-PAFSPDGSKLAFA--LSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWYPDSQ 300
Query: 386 HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP 445
+ YTS Q+ R Q+ +V N P V E N S
Sbjct: 301 TLAYTSD----QAGRP--QVYKV---------NINGGAPQRVTW----EGSQNQDADISS 341
Query: 446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
DGKF+V S SG +N+ LD V G Q ++D PS +P G ++ +SS++
Sbjct: 342 DGKFMVMVSSNSGAQNIAKLDLVTGGV-----QTLSSTFLDETPSLAPNGTMVIYSSSQ 395
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ GSG R G R + D + L +T+
Sbjct: 261 ALSKTG-----SLNLYVMD-IGSGQIRQVTDG--------RSNNTEPTWYPDSQTLAYTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRVTWEGSQN 334
>gi|429107936|ref|ZP_19169805.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
malonaticus 681]
gi|429109514|ref|ZP_19171284.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
malonaticus 507]
gi|426294659|emb|CCJ95918.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
malonaticus 681]
gi|426310671|emb|CCJ97397.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
malonaticus 507]
Length = 430
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 18/129 (13%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDIGSGQ----IRQVTDGRSNNTEPTWYPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+A++S++ V Y + +G +R+ EGS + D + S+DG+++
Sbjct: 301 TLAYTSDQAGRPQV-----YKVNINGGAPQRVTW---EGSQNQDAD------ISSDGKFM 346
Query: 557 LFTANLGAV 565
+ ++ G
Sbjct: 347 VMVSSNGGA 355
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L +T+
Sbjct: 261 ALSKTG-----SLNLYVMDIGSGQIRQVTDG---------RSNNTEPTWYPDSQTLAYTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRVTWEGSQN 334
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 30/179 (16%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD-GSKRWTLIKDRTAFYN--SWSPTEK 385
R NG+ P+FSPDG + F + + D GS + + D + +W P +
Sbjct: 244 RHNGA-PAFSPDGSKLAFA--LSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWYPDSQ 300
Query: 386 HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP 445
+ YTS Q+ R Q+ +V N P V E N S
Sbjct: 301 TLAYTSD----QAGRP--QVYKV---------NINGGAPQRVTW----EGSQNQDADISS 341
Query: 446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
DGKF+V S G +N+ LD G Q ++D PS +P G ++ +SS++
Sbjct: 342 DGKFMVMVSSNGGAQNIAKLDLATGGV-----QTLSSTFLDETPSLAPNGTMVIYSSSQ 395
>gi|410085250|ref|ZP_11281969.1| tolB protein precursor protein [Morganella morganii SC01]
gi|421492238|ref|ZP_15939599.1| hypothetical protein MU9_0766 [Morganella morganii subsp. morganii
KT]
gi|455738555|ref|YP_007504821.1| tolB protein precursor protein [Morganella morganii subsp. morganii
KT]
gi|400193394|gb|EJO26529.1| hypothetical protein MU9_0766 [Morganella morganii subsp. morganii
KT]
gi|409767959|gb|EKN52023.1| tolB protein precursor protein [Morganella morganii SC01]
gi|455420118|gb|AGG30448.1| tolB protein precursor protein [Morganella morganii subsp. morganii
KT]
Length = 430
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 22/151 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ +RQ+TDG +T PSW P
Sbjct: 245 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLGSGQ----MRQVTDGRSNNTEPSWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEG-SGDVDRERINHVCFSADGEW 555
+AF+S D +Y + +G R+ G + +GDV SADG +
Sbjct: 301 TLAFTS-----DQAGRPQIYKVGINGGAPERLTWDGTQNQNGDV----------SADGSF 345
Query: 556 LLFTANLGAV--MAEPVSWPNQFQPYGDLYV 584
L+ ++ G +A+ N FQ D ++
Sbjct: 346 LVMVSSGGGKQHIAKQDLVANNFQILTDTFL 376
Score = 43.5 bits (101), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG+ L + + SG L + + +G+ +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGEKLAYVTFESGSSALVIQNLSSGQ----VRQVASFPRHNGAPAFSPDGTKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ GSG R G R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDL-GSGQMRQVTDG--------RSNNTEPSWFPDSQTLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G RLTW+G +N
Sbjct: 307 DQAG------------RP--QIYKVGINGGAPERLTWDGTQN 334
>gi|389841689|ref|YP_006343773.1| translocation protein TolB [Cronobacter sakazakii ES15]
gi|417790984|ref|ZP_12438489.1| translocation protein TolB [Cronobacter sakazakii E899]
gi|429114650|ref|ZP_19175568.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
sakazakii 701]
gi|429120110|ref|ZP_19180795.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
sakazakii 680]
gi|449308979|ref|YP_007441335.1| translocation protein TolB [Cronobacter sakazakii SP291]
gi|333954948|gb|EGL72745.1| translocation protein TolB [Cronobacter sakazakii E899]
gi|387852165|gb|AFK00263.1| translocation protein TolB [Cronobacter sakazakii ES15]
gi|426317779|emb|CCK01681.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
sakazakii 701]
gi|426325356|emb|CCK11532.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
sakazakii 680]
gi|449099012|gb|AGE87046.1| translocation protein TolB [Cronobacter sakazakii SP291]
Length = 430
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 18/129 (13%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDIGSGQ----IRQVTDGRSNNTEPTWYPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+A++S++ V Y + +G +R+ EGS + D + S+DG+++
Sbjct: 301 TLAYTSDQAGRPQV-----YKVNINGGAPQRVTW---EGSQNQDAD------ISSDGKFM 346
Query: 557 LFTANLGAV 565
+ ++ G
Sbjct: 347 VMVSSNGGA 355
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L +T+
Sbjct: 261 ALSKTG-----SLNLYVMDIGSGQIRQVTDG---------RSNNTEPTWYPDSQTLAYTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRVTWEGSQN 334
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 30/179 (16%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD-GSKRWTLIKDRTAFYN--SWSPTEK 385
R NG+ P+FSPDG + F + + D GS + + D + +W P +
Sbjct: 244 RHNGA-PAFSPDGSKLAFA--LSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWYPDSQ 300
Query: 386 HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP 445
+ YTS Q+ R Q+ +V N P V E N S
Sbjct: 301 TLAYTSD----QAGRP--QVYKV---------NINGGAPQRVTW----EGSQNQDADISS 341
Query: 446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
DGKF+V S G +N+ LD G Q ++D PS +P G ++ +SS++
Sbjct: 342 DGKFMVMVSSNGGAQNIAKLDLATGGV-----QTLSSTFLDETPSLAPNGTMVIYSSSQ 395
>gi|325280803|ref|YP_004253345.1| peptidase S41 [Odoribacter splanchnicus DSM 20712]
gi|324312612|gb|ADY33165.1| peptidase S41 [Odoribacter splanchnicus DSM 20712]
Length = 1110
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 70/151 (46%), Gaps = 29/151 (19%)
Query: 440 FPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
+P+ SPDGK + F +K L + G G QLT P D+ P WSP G IA
Sbjct: 30 YPAISPDGKTIAF-----CYKGDIFLVSSEG---GRATQLTTHPAYDSRPVWSPDGKTIA 81
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRI-HVAGPEGSGDVDRERINHVCFSADGEWLLF 558
F+S R E +LY + G R+ + +G E VCF+ DG+ +L+
Sbjct: 82 FTSARD-----EGLNLYTVPVSGGTPTRLTYYSGSEIP----------VCFTPDGKEILY 126
Query: 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589
+N VM P + QF G +Y + +DG
Sbjct: 127 RSN---VM--PDAEYGQFPSGGQVYKISVDG 152
>gi|152969308|ref|YP_001334417.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|420036238|ref|ZP_14549899.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
gi|150954157|gb|ABR76187.1| translocation protein TolB precursor [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|397407057|gb|EJJ98460.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
Length = 418
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+T+G +T PSW P
Sbjct: 233 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLGSGQ----IRQVTNGRSNNTEPSWFPDSQ 288
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + SADG+ +
Sbjct: 289 NLAFTSDQAGRPQV-----YKVNINGGTPQRITW---EGSQNQDAD------VSADGKTM 334
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 335 VMVSSAG 341
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L V N +RQ+ P + P++SP G +AF
Sbjct: 193 PAWSPDGSKLAYVTFESGRSALVVQTLANAS----VRQIASFPQHNGAPAFSPDGSKLAF 248
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ GSG + R+ N + + W +
Sbjct: 249 ALSKTG-----SLNLYVMD--------------LGSGQI-RQVTNGRSNNTEPSWFPDSQ 288
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
NL A ++ P +Y V ++G +R+TW G +N
Sbjct: 289 NL-AFTSDQAGRPQ-------VYKVNINGGTPQRITWEGSQN 322
>gi|83816446|ref|YP_446482.1| hypothetical protein SRU_2383 [Salinibacter ruber DSM 13855]
gi|83757840|gb|ABC45953.1| hypothetical protein SRU_2383 [Salinibacter ruber DSM 13855]
Length = 1065
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 33/179 (18%)
Query: 438 NAFPSCSPDGKFLVFRSGRSG-HKNLFVLDAVNGEFNGDIRQLTDGP------WIDTMPS 490
N P+ SPDG+++ F S R+ + NLFV DA GE ++ P +I++ +
Sbjct: 332 NISPAVSPDGRYVAFISRRNLFNTNLFVADAETGEIVQELEGTRSNPHFDALRFINSAGA 391
Query: 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS 550
WSP G AF + + + F++ +G R A E G I+++ +S
Sbjct: 392 WSPDGRRFAFITFADGRNEINTFNVQ------TGEIRTRTA-VENVGA-----IHNLAWS 439
Query: 551 ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
DG+ + F+ G + DLYV LD +R+LT + Y P W P
Sbjct: 440 PDGQSIAFSGLEGGL--------------SDLYVYDLDQKNVRQLTNDRYAALQPTWSP 484
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503
SPDG+ + F G +L+V D ++RQLT+ + P+WSP G+ +AF+++
Sbjct: 439 SPDGQSIAFSGLEGGLSDLYVYDLDQK----NVRQLTNDRYAALQPTWSPDGETLAFTTD 494
Query: 504 R 504
R
Sbjct: 495 R 495
>gi|270263785|ref|ZP_06192054.1| protein TolB, precursor [Serratia odorifera 4Rx13]
gi|333926120|ref|YP_004499699.1| protein tolB [Serratia sp. AS12]
gi|333931073|ref|YP_004504651.1| protein tolB [Serratia plymuthica AS9]
gi|386327943|ref|YP_006024113.1| protein tolB [Serratia sp. AS13]
gi|421782213|ref|ZP_16218672.1| tol-Pal system beta propeller repeat protein TolB [Serratia
plymuthica A30]
gi|270042669|gb|EFA15764.1| protein TolB, precursor [Serratia odorifera 4Rx13]
gi|333472680|gb|AEF44390.1| Protein tolB [Serratia plymuthica AS9]
gi|333490180|gb|AEF49342.1| Protein tolB [Serratia sp. AS12]
gi|333960276|gb|AEG27049.1| Protein tolB [Serratia sp. AS13]
gi|407755769|gb|EKF65893.1| tol-Pal system beta propeller repeat protein TolB [Serratia
plymuthica A30]
Length = 430
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 19/129 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F +SG NL+V++ +G+ I Q+TDG +T P+W P G
Sbjct: 245 HNGAPAFSPDGSRLAFALSKSGSLNLYVMNLGSGQ----ITQITDGRSNNTEPTWFPDGQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+A++S++ + Y + G +R+ EGS + D E S+DG++L
Sbjct: 301 SLAYTSDQGGRPQI-----YKVSASGGASQRLTW---EGSQNQDSE------VSSDGKFL 346
Query: 557 -LFTANLGA 564
+ ++N GA
Sbjct: 347 VMVSSNSGA 355
Score = 45.8 bits (107), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 67/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L V NG IRQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVVQTLANGA----IRQIASFPRHNGAPAFSPDGSRLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ + +I R + DG+ L +T+
Sbjct: 261 ALSKSG-----SLNLYVMNLGSGQITQITDG---------RSNNTEPTWFPDGQSLAYTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ G +P +Y V G +RLTW G +N
Sbjct: 307 DQGG------------RP--QIYKVSASGGASQRLTWEGSQN 334
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 28/178 (15%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN--SWSPTEKH 386
R NG+ P+FSPDG + F + + + GS + T I D + +W P +
Sbjct: 244 RHNGA-PAFSPDGSRLAFALSKSGSLNLYVMNL-GSGQITQITDGRSNNTEPTWFPDGQS 301
Query: 387 VIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD 446
+ YTS + QI +VS S + LT E + N S D
Sbjct: 302 LAYTS------DQGGRPQIYKVSASGGAS------------QRLTWEGS-QNQDSEVSSD 342
Query: 447 GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
GKFLV S SG +++ D +G Q+ G ++D PS +P G ++ +SS +
Sbjct: 343 GKFLVMVSSNSGAQHIAKQDLGSGAV-----QVLTGTFLDETPSIAPNGTMVIYSSTQ 395
>gi|365139007|ref|ZP_09345588.1| protein tolB [Klebsiella sp. 4_1_44FAA]
gi|378977741|ref|YP_005225882.1| translocation protein TolB precursor [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|386033885|ref|YP_005953798.1| translocation protein TolB [Klebsiella pneumoniae KCTC 2242]
gi|402781731|ref|YP_006637277.1| tolB protein precursor, periplasmic protein [Klebsiella pneumoniae
subsp. pneumoniae 1084]
gi|419976369|ref|ZP_14491767.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH1]
gi|419977878|ref|ZP_14493176.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH2]
gi|419984628|ref|ZP_14499773.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH4]
gi|419993157|ref|ZP_14508103.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH5]
gi|419996754|ref|ZP_14511554.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH6]
gi|420002819|ref|ZP_14517468.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH7]
gi|420006832|ref|ZP_14521328.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH8]
gi|420012612|ref|ZP_14526925.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH9]
gi|420020864|ref|ZP_14535049.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH10]
gi|420024138|ref|ZP_14538152.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|420031127|ref|ZP_14544950.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH12]
gi|420041968|ref|ZP_14555463.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|420047062|ref|ZP_14560380.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|420054146|ref|ZP_14567321.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH18]
gi|420058880|ref|ZP_14571890.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|420064230|ref|ZP_14577040.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|420069598|ref|ZP_14582253.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|420076226|ref|ZP_14588698.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|420082753|ref|ZP_14595046.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|421912983|ref|ZP_16342687.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|421918430|ref|ZP_16347959.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|424829680|ref|ZP_18254408.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella
pneumoniae subsp. pneumoniae Ecl8]
gi|424934400|ref|ZP_18352772.1| Protein tolB [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|425077602|ref|ZP_18480705.1| protein tolB [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|425080562|ref|ZP_18483659.1| protein tolB [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|425088235|ref|ZP_18491328.1| protein tolB [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
gi|425090623|ref|ZP_18493708.1| protein tolB [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|428150080|ref|ZP_18997870.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
gi|428933942|ref|ZP_19007479.1| translocation protein TolB [Klebsiella pneumoniae JHCK1]
gi|428933974|ref|ZP_19007510.1| translocation protein TolB [Klebsiella pneumoniae JHCK1]
gi|428937303|ref|ZP_19010608.1| translocation protein TolB [Klebsiella pneumoniae JHCK1]
gi|428943544|ref|ZP_19016423.1| translocation protein TolB [Klebsiella pneumoniae VA360]
gi|428943574|ref|ZP_19016448.1| translocation protein TolB [Klebsiella pneumoniae VA360]
gi|449060909|ref|ZP_21738447.1| translocation protein TolB [Klebsiella pneumoniae hvKP1]
gi|339761013|gb|AEJ97233.1| translocation protein TolB [Klebsiella pneumoniae KCTC 2242]
gi|363654692|gb|EHL93581.1| protein tolB [Klebsiella sp. 4_1_44FAA]
gi|364517152|gb|AEW60280.1| translocation protein TolB precursor [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397340674|gb|EJJ33870.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH1]
gi|397353418|gb|EJJ46492.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH2]
gi|397353605|gb|EJJ46673.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH4]
gi|397359129|gb|EJJ51831.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH5]
gi|397364162|gb|EJJ56795.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH6]
gi|397370469|gb|EJJ63043.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH7]
gi|397381488|gb|EJJ73659.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH9]
gi|397385679|gb|EJJ77774.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH8]
gi|397387535|gb|EJJ79560.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH10]
gi|397399521|gb|EJJ91173.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|397400867|gb|EJJ92505.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH12]
gi|397417527|gb|EJK08692.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|397417821|gb|EJK08984.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|397423422|gb|EJK14354.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH18]
gi|397433839|gb|EJK24482.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|397436204|gb|EJK26798.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|397442846|gb|EJK33188.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|397447331|gb|EJK37525.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|397451941|gb|EJK42018.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|402539221|gb|AFQ63370.1| tolB protein precursor, periplasmic protein [Klebsiella pneumoniae
subsp. pneumoniae 1084]
gi|405590581|gb|EKB64094.1| protein tolB [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|405601327|gb|EKB74480.1| protein tolB [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
gi|405606207|gb|EKB79202.1| protein tolB [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|405614307|gb|EKB87028.1| protein tolB [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|407808587|gb|EKF79838.1| Protein tolB [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|410113208|emb|CCM85312.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|410119292|emb|CCM90584.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|414707105|emb|CCN28809.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella
pneumoniae subsp. pneumoniae Ecl8]
gi|426296466|gb|EKV59096.1| translocation protein TolB [Klebsiella pneumoniae VA360]
gi|426296520|gb|EKV59141.1| translocation protein TolB [Klebsiella pneumoniae VA360]
gi|426296553|gb|EKV59168.1| translocation protein TolB [Klebsiella pneumoniae JHCK1]
gi|426303876|gb|EKV66034.1| translocation protein TolB [Klebsiella pneumoniae JHCK1]
gi|426303953|gb|EKV66109.1| translocation protein TolB [Klebsiella pneumoniae JHCK1]
gi|427539971|emb|CCM94008.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
gi|448873538|gb|EMB08625.1| translocation protein TolB [Klebsiella pneumoniae hvKP1]
Length = 430
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+T+G +T PSW P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLGSGQ----IRQVTNGRSNNTEPSWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + SADG+ +
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGTPQRITW---EGSQNQDAD------VSADGKTM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSAG 353
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L V N +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVVQTLANAS----VRQIASFPQHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ GSG + R+ N + + W +
Sbjct: 261 ALSKTG-----SLNLYVMD--------------LGSGQI-RQVTNGRSNNTEPSWFPDSQ 300
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
NL A ++ P +Y V ++G +R+TW G +N
Sbjct: 301 NL-AFTSDQAGRPQ-------VYKVNINGGTPQRITWEGSQN 334
>gi|224370139|ref|YP_002604303.1| AglW [Desulfobacterium autotrophicum HRM2]
gi|223692856|gb|ACN16139.1| AglW [Desulfobacterium autotrophicum HRM2]
Length = 447
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 32/177 (18%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G + P SPDGK + F S R+G +++ D + +R+LT +T P+WSP G
Sbjct: 301 GIDVSPCFSPDGKKMAFVSKRAGTPQVYIQDMESDT----VRRLTFTGRYNTSPAWSPDG 356
Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW 555
D IA+ + N+ YV+ DGSG+ ++ +GD + C+S D
Sbjct: 357 DKIAYVGIANGEINI-----YVVGIDGSGVVQL----TSSTGDNEDP-----CWSPDAGL 402
Query: 556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQ 612
+ FT+ V +YV+ G RRL P W GN+
Sbjct: 403 IAFTSTREGV--------------ARIYVMTATGGEQRRLFLMDGAQTNPEWSRGNE 445
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 30/135 (22%)
Query: 476 IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEG 535
I++LT+ ID P +SP G +AF S R V Y+ + +RR+ G
Sbjct: 293 IKKLTNSWGIDVSPCFSPDGKKMAFVSKRAGTPQV-----YIQDMESDTVRRLTFTG--- 344
Query: 536 SGDVDRERINHV-CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR 594
R N +S DG+ + A +G E ++YVV +DGSG+ +
Sbjct: 345 -------RYNTSPAWSPDGDKI---AYVGIANGEI-----------NIYVVGIDGSGVVQ 383
Query: 595 LTWNGYENGTPAWHP 609
LT + +N P W P
Sbjct: 384 LTSSTGDNEDPCWSP 398
>gi|424798678|ref|ZP_18224220.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
sakazakii 696]
gi|423234399|emb|CCK06090.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
sakazakii 696]
Length = 430
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 19/129 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDIGSGQ----IRQVTDGRSNNTEPTWYPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+A++S++ V Y + +G +R+ EGS + D + S+DG+++
Sbjct: 301 TLAYTSDQAGRPQV-----YKVNINGGAPQRVTW---EGSQNQDAD------ISSDGKFM 346
Query: 557 -LFTANLGA 564
+ ++N GA
Sbjct: 347 VMVSSNSGA 355
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ GSG R G R + D + L +T+
Sbjct: 261 ALSKTG-----SLNLYVMD-IGSGQIRQVTDG--------RSNNTEPTWYPDSQTLAYTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRVTWEGSQN 334
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 30/179 (16%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD-GSKRWTLIKDRTAFYN--SWSPTEK 385
R NG+ P+FSPDG + F + + D GS + + D + +W P +
Sbjct: 244 RHNGA-PAFSPDGSKLAFA--LSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWYPDSQ 300
Query: 386 HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP 445
+ YTS Q+ R Q+ +V N P V E N S
Sbjct: 301 TLAYTSD----QAGRP--QVYKV---------NINGGAPQRVTW----EGSQNQDADISS 341
Query: 446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
DGKF+V S SG +N+ LD G Q ++D PS +P G ++ +SS++
Sbjct: 342 DGKFMVMVSSNSGAQNIAKLDLATGGV-----QTLSSTFLDETPSLAPNGTMVIYSSSQ 395
>gi|56697941|ref|YP_168312.1| translocation protein TolB [Ruegeria pomeroyi DSS-3]
gi|67461891|sp|Q5LNU4.1|TOLB_SILPO RecName: Full=Protein TolB; Flags: Precursor
gi|56679678|gb|AAV96344.1| TolB, putative [Ruegeria pomeroyi DSS-3]
Length = 439
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 13/138 (9%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS +PDG +VF S RSG L+V+ A GE +++ G P WSP+GDLIAF
Sbjct: 299 PSYAPDGSRIVFESDRSGTPQLYVMSAAGGEAT----RISFGQGRYGTPVWSPRGDLIAF 354
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA----GPEGSGDVDRERINHVCFSADGEWL 556
+ F + V++ DGS R + + GP S + A G
Sbjct: 355 TKQSKG-----RFHIGVMRADGSEERLLTASFLDEGPTWSPNGRVIMFTRETQGASGRAA 409
Query: 557 LFTANLGAVMAEPVSWPN 574
L++ ++ PV P+
Sbjct: 410 LYSVDISGRNLRPVRTPD 427
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 95/234 (40%), Gaps = 51/234 (21%)
Query: 380 WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNA 439
+SPT V+YTS +Q + I V ++L ++ +
Sbjct: 212 FSPTGDRVLYTS----YQGGFPRIHILDVG--------------QVQQRVLQSQDGTMSF 253
Query: 440 FPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
P SPDG+ ++F + G+ +L+ ++ +G+ +LT P I+T PS++P G I
Sbjct: 254 APRFSPDGQTVLFSLAQGGNTDLYAMNIASGQST----RLTSAPSIETAPSYAPDGSRIV 309
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559
F S+R LYV+ G RI G G R +S G+ + FT
Sbjct: 310 FESDRSGTPQ-----LYVMSAAGGEATRISF----GQG-----RYGTPVWSPRGDLIAFT 355
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
Q + + V++ DGS R LT + + G P W P ++
Sbjct: 356 --------------KQSKGRFHIGVMRADGSEERLLTASFLDEG-PTWSPNGRV 394
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 78/211 (36%), Gaps = 41/211 (19%)
Query: 335 PSFSPDGGLIVFNHDFELNA---GIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTS 391
P FSPDG ++F+ N + IA ++ + TA S++P +++ S
Sbjct: 255 PRFSPDGQTVLFSLAQGGNTDLYAMNIASGQSTRLTSAPSIETA--PSYAPDGSRIVFES 312
Query: 392 ----TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
T ++ A + R+SF G P SP G
Sbjct: 313 DRSGTPQLYVMSAAGGEATRISF-----------------------GQGRYGTPVWSPRG 349
Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP 507
+ F G ++ V+ A +G +L ++D P+WSP G +I F+
Sbjct: 350 DLIAFTKQSKGRFHIGVMRA-----DGSEERLLTASFLDEGPTWSPNGRVIMFTRETQGA 404
Query: 508 DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGD 538
A LY + G LR + P+G D
Sbjct: 405 SGRAA--LYSVDISGRNLRPVRT--PDGGSD 431
>gi|375013740|ref|YP_004990728.1| periplasmic component of the Tol biopolymer transport system
[Owenweeksia hongkongensis DSM 17368]
gi|359349664|gb|AEV34083.1| periplasmic component of the Tol biopolymer transport system
[Owenweeksia hongkongensis DSM 17368]
Length = 377
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 44/192 (22%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G +A + SPDGK +VF S RSG L+ ++ ++G D +Q+T G D +SP
Sbjct: 184 GYDAEATVSPDGKKIVFTSDRSGDLELWTMN-IDGS---DQKQVTTGLGYDGGAFFSPDS 239
Query: 496 DLIAFSSNRHNPDNVEA-----------------FSLYVIKPDGSGLRRIHVAGPEGSGD 538
+ F S+R P E +YV DGS L+++
Sbjct: 240 KKLVFRSSR--PQTAEEKQKYKDLLAQGLVMPSDMEIYVCNVDGSDLQKV---------- 287
Query: 539 VDRERINHV-CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW 597
D N F GE +LF++N + P +LY++ LDG+GL ++++
Sbjct: 288 TDLGNANWAPFFHPSGEKILFSSNHASEKGYPF----------NLYLINLDGTGLEQVSF 337
Query: 598 NGYENGTPAWHP 609
+G + P + P
Sbjct: 338 DGVFDAFPMFSP 349
Score = 45.8 bits (107), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 79/180 (43%), Gaps = 16/180 (8%)
Query: 336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTS 391
+ SPDG IVF D + + DGS + + D AF+ SP K +++ S
Sbjct: 190 TVSPDGKKIVFTSDRSGDLELWTMNIDGSDQKQVTTGLGYDGGAFF---SPDSKKLVFRS 246
Query: 392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK---ILTKEETGN-NAFPSCSPDG 447
+ P E+ + + PSD E C+V + + GN N P P G
Sbjct: 247 SRPQTAEEKQKYKDLLAQGLVMPSD---MEIYVCNVDGSDLQKVTDLGNANWAPFFHPSG 303
Query: 448 KFLVFRSGRSGHKNL-FVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHN 506
+ ++F S + K F L +N + G + Q++ D P +SP G + FSSNR+N
Sbjct: 304 EKILFSSNHASEKGYPFNLYLINLDGTG-LEQVSFDGVFDAFPMFSPDGKKLIFSSNRNN 362
>gi|83950088|ref|ZP_00958821.1| translocation protein TolB precursor [Roseovarius nubinhibens ISM]
gi|83837987|gb|EAP77283.1| translocation protein TolB precursor [Roseovarius nubinhibens ISM]
Length = 440
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 104/237 (43%), Gaps = 53/237 (22%)
Query: 380 WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNA 439
+SPT V+YTS F RV + LD + + R L + + G +
Sbjct: 214 FSPTGDRVLYTSYESGF---------PRV-YVLDVASVSRR---------LLESQDGTMS 254
Query: 440 F-PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
F P SPDG+ +V+ + G+ +++ +D G ++LT+ P I+T PS+SP G I
Sbjct: 255 FAPRFSPDGRTVVYSLIQGGNTDIYTMDIATGAS----QRLTNAPSIETAPSFSPDGRQI 310
Query: 499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLF 558
F S+R + + YV+ G RRI G+G + +S G+++ F
Sbjct: 311 VFESDRSGTNQI-----YVMNAQGGEARRIS----GGTG-----QYGTPVWSPRGDYIAF 356
Query: 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDL 615
T Q + + V++++G R LT + + G P W P ++ +
Sbjct: 357 T--------------KQSKGRFHIGVMRVNGEEERLLTASFLDEG-PTWSPNGRVIM 398
>gi|218462393|ref|ZP_03502484.1| translocation protein TolB [Rhizobium etli Kim 5]
Length = 360
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + IDT PS+SP G ++F
Sbjct: 177 PRFSPDGQKVIMSLQQEGNSNIYTMDLRSRTTTRLTSTAA----IDTSPSYSPDGARVSF 232
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGSG RI +GS + +S G+ + FT
Sbjct: 233 ESDRGGKPQI-----YVMNADGSGQTRISFG--DGS-------YSTPVWSPRGDLIAFTK 278
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT G+ N P W P ++
Sbjct: 279 QSGGKFS--------------IGVMKPDGSGERILT-TGFHNEGPTWAPNGRV 316
>gi|347526632|ref|YP_004833379.1| TolB protein [Sphingobium sp. SYK-6]
gi|345135313|dbj|BAK64922.1| TolB protein [Sphingobium sp. SYK-6]
Length = 447
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 95/246 (38%), Gaps = 46/246 (18%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGS-------------FPSFSPDG 341
Y R GES S I ++ P + VK L ++ +G+ P +SPD
Sbjct: 167 YSRLTGESPFFDSRIAYIAETGPKDNRVKRLAIMDSDGANHRFITNGQSLALTPRWSPDY 226
Query: 342 GLIVFNHDFELNAGIKIAKSD-GSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSER 400
I + I I D G +R L + F WSP + ++Y
Sbjct: 227 KSIAYVSYVGKTVRIYIYDVDQGRQRAILETNNAVFAPRWSPDGRTLLY----------- 275
Query: 401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHK 460
S + D + + + G N S SPDG +VF S RSG +
Sbjct: 276 --------SMASGGNTDIYKIGVNGGRPVRLTNTPGINVGGSFSPDGARIVFESDRSGGQ 327
Query: 461 NLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP 520
++V++A D R+++ G P WSP+GDLIAF+ N F + V+ P
Sbjct: 328 QIYVMNA----DGSDQRRISFGGGRYATPEWSPRGDLIAFTKIAGN------FRIGVMSP 377
Query: 521 DGSGLR 526
G R
Sbjct: 378 SGGNER 383
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 103/260 (39%), Gaps = 56/260 (21%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ I SDG+ R+ A WSP K + Y S + + + I V
Sbjct: 197 LAIMDSDGANHRFITNGQSLALTPRWSPDYKSIAYVS----YVGKTVRIYIYDV------ 246
Query: 415 SDDNNREEIPCDVKILTKEETGNNAF-PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
D R+ IL ET N F P SPDG+ L++ G+ +++ + VNG
Sbjct: 247 --DQGRQR-----AIL---ETNNAVFAPRWSPDGRTLLYSMASGGNTDIYKI-GVNG--- 292
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP 533
G +LT+ P I+ S+SP G I F S+R + YV+ DGS RRI G
Sbjct: 293 GRPVRLTNTPGINVGGSFSPDGARIVFESDRSGGQQI-----YVMNADGSDQRRISFGG- 346
Query: 534 EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR 593
R +S G+ + FT G +S P G G
Sbjct: 347 --------GRYATPEWSPRGDLIAFTKIAGNFRIGVMS------PSG----------GNE 382
Query: 594 RLTWNGYENGTPAWHPGNQL 613
RL NG+++ P W P ++
Sbjct: 383 RLLTNGWQDEAPTWSPNGRV 402
>gi|238893776|ref|YP_002918510.1| translocation protein TolB [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|262041200|ref|ZP_06014412.1| tol-Pal system beta propeller repeat protein TolB [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
gi|329998744|ref|ZP_08303198.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella sp.
MS 92-3]
gi|419762421|ref|ZP_14288668.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella
pneumoniae subsp. pneumoniae DSM 30104]
gi|238546092|dbj|BAH62443.1| translocation protein TolB precursor [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|259041429|gb|EEW42488.1| tol-Pal system beta propeller repeat protein TolB [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
gi|328538571|gb|EGF64675.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella sp.
MS 92-3]
gi|397744602|gb|EJK91813.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella
pneumoniae subsp. pneumoniae DSM 30104]
Length = 431
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+T+G +T PSW P
Sbjct: 246 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLGSGQ----IRQVTNGRSNNTEPSWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + SADG+ +
Sbjct: 302 NLAFTSDQAGRPQV-----YKVNINGGTPQRITW---EGSQNQDAD------VSADGKTM 347
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 348 VMVSSAG 354
Score = 43.5 bits (101), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L V N +RQ+ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKLAYVTFESGRSALVVQTLANAS----VRQIASFPQHNGAPAFSPDGSKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ GSG + R+ N + + W +
Sbjct: 262 ALSKTG-----SLNLYVMD--------------LGSGQI-RQVTNGRSNNTEPSWFPDSQ 301
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
NL A ++ P +Y V ++G +R+TW G +N
Sbjct: 302 NL-AFTSDQAGRPQ-------VYKVNINGGTPQRITWEGSQN 335
>gi|145593151|ref|YP_001157448.1| peptidase S9B dipeptidylpeptidase IV subunit [Salinispora tropica
CNB-440]
gi|145302488|gb|ABP53070.1| peptidase S9B, dipeptidylpeptidase IV domain protein [Salinispora
tropica CNB-440]
Length = 590
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 90/215 (41%), Gaps = 26/215 (12%)
Query: 322 VKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWS 381
V++L + SF+PDG IV+ + + ++I D L AF +WS
Sbjct: 284 VRDLVPAEHKPRYASFAPDGRRIVYGTEAGGRSRLRILNLDTGTSQPLPAGEAAF-PTWS 342
Query: 382 PTEKHVIYT-STGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAF 440
P + + T P + E ATV ++ QL + + G +A
Sbjct: 343 PDGRTIACTVRPDPSSRWEIATVDVSSGQVQLWTTGRTDLR--------------GLHAP 388
Query: 441 PSCSPDGKFLVFRSGRSG-HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
S +PDG+ LVFRS NL VLD +G F LT+ W D PS+SP G +
Sbjct: 389 VSFAPDGRRLVFRSETEPFEANLLVLDLNSGRFT----NLTEDSWWDEAPSFSPDGRSVI 444
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
F S R + Y I D + + VAGP+
Sbjct: 445 FMSTRGGD---WTWGFYRIDLDSKEI--VTVAGPD 474
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 29/138 (21%)
Query: 435 TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
TG++ SPDG+ L F S R GHK +++ +G+ +RQLT + PSWSP
Sbjct: 71 TGDDIEAQWSPDGRQLTFTSSRGGHKAIWLYRLSDGQ----VRQLTSADHEEEYPSWSPD 126
Query: 495 GDLIAFSSN----RHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS 550
G +AF RH +++ P G R P R ++
Sbjct: 127 GSTVAFVGGSWGRRH----------FLVVPATGGTPRPVTTNP--------GRAGACSWA 168
Query: 551 ADGEWLL---FTANLGAV 565
DG WL+ + GAV
Sbjct: 169 PDGRWLVCHSYDTGAGAV 186
>gi|429092411|ref|ZP_19155047.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
dublinensis 1210]
gi|426742891|emb|CCJ81160.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
dublinensis 1210]
Length = 430
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDIGSGQ----IRQVTDGRSNNTEPTWYPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+A++S++ V Y + +G +R+ EGS + D + S+DG+++
Sbjct: 301 TLAYTSDQAGRPQV-----YKVNVNGGAPQRVTW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSNG 353
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L +T+
Sbjct: 261 ALSKTG-----SLNLYVMDIGSGQIRQVTDG---------RSNNTEPTWYPDSQTLAYTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNVNGGAPQRVTWEGSQN 334
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 30/179 (16%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD-GSKRWTLIKDRTAFYN--SWSPTEK 385
R NG+ P+FSPDG + F + + D GS + + D + +W P +
Sbjct: 244 RHNGA-PAFSPDGSKLAFA--LSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWYPDSQ 300
Query: 386 HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP 445
+ YTS Q+ R Q+ +V N P V E N S
Sbjct: 301 TLAYTSD----QAGRP--QVYKV---------NVNGGAPQRVTW----EGSQNQDADVSS 341
Query: 446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
DGKF+V S G +N+ LD V G Q ++D PS +P G ++ +SS++
Sbjct: 342 DGKFMVMVSSNGGAQNIAKLDLVTGGV-----QTLSSTFLDETPSLAPNGTMVIYSSSQ 395
>gi|410621729|ref|ZP_11332574.1| conserved hypothetical protein [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410158730|dbj|GAC27948.1| conserved hypothetical protein [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 1108
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 10/127 (7%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMPSWSPKGD 496
N P+ SPDGK + F S R G N++V++ +NGE ++RQ+T + + P WSP G+
Sbjct: 101 NIHPTISPDGKQVAFISDRDGLSNVWVMN-MNGE---NLRQVTKEKSNLIHSPKWSPDGE 156
Query: 497 LIAFSSNRHNPDNVEAFSLYVI-KPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW 555
I + + ++ A +++ + G GL SG VD++ I FS DG++
Sbjct: 157 YIVVNKGIMSSRSIPAGEIWLYHQSGGDGL----AIKERVSGKVDQKNITDPAFSPDGQY 212
Query: 556 LLFTANL 562
+ +T ++
Sbjct: 213 IYYTQDI 219
>gi|146310896|ref|YP_001175970.1| translocation protein TolB [Enterobacter sp. 638]
gi|166988076|sp|A4W889.1|TOLB_ENT38 RecName: Full=Protein TolB; Flags: Precursor
gi|145317772|gb|ABP59919.1| TolB, N-terminal domain protein [Enterobacter sp. 638]
Length = 430
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDVGSGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+ +
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNVNGGTPQRITW---EGSQNQDAD------VSSDGKTM 346
Query: 557 LFTANLGA 564
+ ++ G
Sbjct: 347 VMVSSAGG 354
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ +PDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWTPDGSKLAYVTFESGRSALVIQTLSNGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ GSG + R+ + + + W +
Sbjct: 261 ALSKTG-----SLNLYVMD--------------VGSGQI-RQVTDGRSNNTEPTWFPDSQ 300
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
NL A ++ P +Y V ++G +R+TW G +N
Sbjct: 301 NL-AFTSDQAGRPQ-------VYKVNVNGGTPQRITWEGSQN 334
>gi|399910989|ref|ZP_10779303.1| translocation protein TolB [Halomonas sp. KM-1]
Length = 429
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 90/220 (40%), Gaps = 27/220 (12%)
Query: 297 GYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH-DFELNAG 355
G R GES S L A V + + G +FS + D + G
Sbjct: 122 GQRRMLGESVSAGSN--ELRSGAHYVSDQIFEAITGIRGAFSTRIAYVTAQGVDQNMQFG 179
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A +DG ++ R + WSP + + Y S F++ER + +
Sbjct: 180 LYVADADGHNSQQVLNSREPILSPVWSPDGRKLAYVS----FETERPAIYV--------- 226
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+++ + G N P+ SPDG+ L + G +++++D G N
Sbjct: 227 ------QDVGTGQRAQVASFDGINGAPAWSPDGRRLAMTLSKDGQPDIYIMDV--GSRN- 277
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFS 514
+ ++T+ IDT P+W+P G + F+S+R + +S
Sbjct: 278 -LERITNNSSIDTEPAWAPDGRSLIFTSDRSGGPQIYRYS 316
>gi|395787956|ref|ZP_10467533.1| protein tolB [Bartonella birtlesii LL-WM9]
gi|395409975|gb|EJF76557.1| protein tolB [Bartonella birtlesii LL-WM9]
Length = 441
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 13/96 (13%)
Query: 442 SCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFS 501
S SPDG +VF S RSG ++ +DA +IR+++ + P WSP+GD IAF+
Sbjct: 302 SYSPDGTQIVFSSDRSGRPQIYTMDAD----GNNIRRISSNEGSYSTPIWSPRGDYIAFT 357
Query: 502 SNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGP 533
FS+ V++PDG G R + H GP
Sbjct: 358 KQSEG-----QFSIGVMRPDGQGERILTTGFHNEGP 388
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 81/189 (42%), Gaps = 35/189 (18%)
Query: 441 PSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
P S DG+ ++ ++ G NL+ +D +LT IDT S+SP G I
Sbjct: 256 PRFSSDGQKVIMSLLQNDGSANLYTMDLRTRTMT----RLTTTSAIDTSASYSPDGTQIV 311
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559
FSS+R + Y + DG+ +RRI + EGS + +S G+++ FT
Sbjct: 312 FSSDRSGRPQI-----YTMDADGNNIRRI--SSNEGS-------YSTPIWSPRGDYIAFT 357
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLR 619
Q + + V++ DG G R LT G+ N P W P ++ L R
Sbjct: 358 --------------KQSEGQFSIGVMRPDGQGERILT-TGFHNEGPTWAPNGRV-LMFFR 401
Query: 620 LEDDIGDKL 628
+G KL
Sbjct: 402 KNPGMGPKL 410
>gi|393759115|ref|ZP_10347932.1| translocation protein TolB [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
gi|393162632|gb|EJC62689.1| translocation protein TolB [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
Length = 436
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 34/195 (17%)
Query: 353 NAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411
N ++IA +DG +++ R + + +WSP K + Y S F++++ V + ++
Sbjct: 184 NYELQIADADGQNPQVMLRSRHSIISPAWSPDGKKLAYVS----FENDKPVVYVQTLA-- 237
Query: 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471
+RE + + K GNN+ P+ SP+G L R G ++ +N +
Sbjct: 238 -----TGHREPL-ANFK-------GNNSSPAWSPNGNQLAVVLSRDGISQIYT---INAD 281
Query: 472 FNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA 531
+G +R++ P IDT PS++P G+ + F S+R N+ Y + G +RI
Sbjct: 282 GSG-LRRVMRSPLIDTEPSFTPDGNSLVFVSDRGGAPNI-----YKVSLGGDDAQRITFN 335
Query: 532 G-----PEGSGDVDR 541
G PE S D R
Sbjct: 336 GSYNISPEVSADGTR 350
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 44/171 (25%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNG------EFNGDIRQLTDGPWIDTMPSWSPK 494
P+ SPDGK L + S + ++V G F G+ ++ P+WSP
Sbjct: 210 PAWSPDGKKLAYVSFENDKPVVYVQTLATGHREPLANFKGN----------NSSPAWSPN 259
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
G+ +A +R D + +Y I DGSGLRR+ S +D E F+ DG
Sbjct: 260 GNQLAVVLSR---DGIS--QIYTINADGSGLRRVMR-----SPLIDTEP----SFTPDGN 305
Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTP 605
L+F ++ G PN +Y V L G +R+T+NG N +P
Sbjct: 306 SLVFVSDRGGA-------PN-------IYKVSLGGDDAQRITFNGSYNISP 342
>gi|260597139|ref|YP_003209710.1| translocation protein TolB [Cronobacter turicensis z3032]
gi|260216316|emb|CBA29301.1| Protein tolB [Cronobacter turicensis z3032]
Length = 430
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 18/129 (13%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDIGSGQ----IRQVTDGRSNNTEPTWYPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+A++S++ V Y + +G +R+ EGS + D + S+DG+++
Sbjct: 301 TLAYTSDQAGRPQV-----YKVNINGGAPQRVTW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLGAV 565
+ ++ G
Sbjct: 347 VMVSSNGGA 355
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 30/179 (16%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD-GSKRWTLIKDRTAFYN--SWSPTEK 385
R NG+ P+FSPDG + F + + D GS + + D + +W P +
Sbjct: 244 RHNGA-PAFSPDGSKLAFA--LSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWYPDSQ 300
Query: 386 HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP 445
+ YTS Q+ R Q+ +V N P V E N S
Sbjct: 301 TLAYTSD----QAGRP--QVYKV---------NINGGAPQRVTW----EGSQNQDADVSS 341
Query: 446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
DGKF+V S G +N+ LD V G Q ++D PS +P G ++ +SS++
Sbjct: 342 DGKFMVMVSSNGGAQNIAKLDLVTGGV-----QTLSSTFLDETPSLAPNGTMVIYSSSQ 395
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 38/165 (23%)
Query: 441 PSCSPDGK---FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497
P+ SPDG ++ F SGRS V+ ++ NG +RQ+ P + P++SP G
Sbjct: 205 PAWSPDGSKVAYVTFESGRSA----LVIQTLS---NGAVRQVASFPRHNGAPAFSPDGSK 257
Query: 498 IAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL 557
+AF+ ++ + +LYV+ +R++ R + D + L
Sbjct: 258 LAFALSKTG-----SLNLYVMDIGSGQIRQVTDG---------RSNNTEPTWYPDSQTLA 303
Query: 558 FTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+T++ +P +Y V ++G +R+TW G +N
Sbjct: 304 YTSDQAG------------RP--QVYKVNINGGAPQRVTWEGSQN 334
>gi|348030295|ref|YP_004872981.1| amidohydrolase [Glaciecola nitratireducens FR1064]
gi|347947638|gb|AEP30988.1| amidohydrolase [Glaciecola nitratireducens FR1064]
Length = 1110
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 10/124 (8%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMPSWSPKGD 496
N P+ SPDGK + F S R G N++V+D +NGE ++RQ+T + + P WSP G+
Sbjct: 103 NIHPAVSPDGKQVAFISDRDGLSNVWVMD-INGE---NLRQVTKEKKNLIHSPKWSPDGE 158
Query: 497 LIAFSSNRHNPDNVEAFSLYVI-KPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW 555
I + + ++ A +++ + G GL +G +D++ I FS DG++
Sbjct: 159 YIVVNKGIMSSRSIPAGEIWLYHQSGGDGL----AIKERVNGKIDQKNIADPAFSPDGKY 214
Query: 556 LLFT 559
+ FT
Sbjct: 215 IYFT 218
>gi|110804634|ref|YP_688154.1| translocation protein TolB [Shigella flexneri 5 str. 8401]
gi|425209999|ref|ZP_18605740.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA4]
gi|123147175|sp|Q0T6X7.1|TOLB_SHIF8 RecName: Full=Protein TolB; Flags: Precursor
gi|110614182|gb|ABF02849.1| translocation protein TolB precursor [Shigella flexneri 5 str.
8401]
gi|408140756|gb|EKH70243.1| tol-Pal system beta propeller repeat protein TolB [Escherichia coli
PA4]
Length = 430
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S+ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDLAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSNG 353
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+L +P +Y V ++G +R+TW G +N
Sbjct: 307 DLAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|261219286|ref|ZP_05933567.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261322347|ref|ZP_05961544.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|260924375|gb|EEX90943.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261295037|gb|EEX98533.1| conserved hypothetical protein [Brucella ceti M644/93/1]
Length = 443
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 78/179 (43%), Gaps = 34/179 (18%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
G P SPDG+ +V + G N++ +D N +LT IDT S+SP
Sbjct: 254 GMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTT----RLTSSQAIDTGASYSPN 309
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
G I F+S+R LYV+ DGS RRI + +GS + +S G+
Sbjct: 310 GSQIVFTSDRGGRPQ-----LYVMGADGSNPRRISMG--DGS-------YSTPVWSPRGD 355
Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+ FT Q Q + V+K DGSG R LT +G+ N P W P ++
Sbjct: 356 LIAFT--------------KQSQGQFSIGVMKTDGSGERLLT-SGFHNEGPTWAPNGRV 399
>gi|383483193|ref|YP_005392107.1| translocation protein TolB [Rickettsia montanensis str. OSU 85-930]
gi|378935547|gb|AFC74048.1| translocation protein TolB [Rickettsia montanensis str. OSU 85-930]
Length = 444
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 126/301 (41%), Gaps = 37/301 (12%)
Query: 298 YHRFRGESTEGQSTIPHLEPVAS--PVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG 355
Y + G++ + I ++ +S +K + ++ +G+ + +G +V F +A
Sbjct: 152 YEKITGDAGYFDTKIVYVSESSSLPKIKRIALMDYDGANNKYLTNGKSLVLTPRFARSAD 211
Query: 356 IKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS 415
S +KR L+ Y T K + I + R + + + +
Sbjct: 212 KIFYVSYATKRRALV------YEKDLKTGKESVVGDFSGISFAPRFSPDGRKAVMSIAKN 265
Query: 416 DDNNREEIPCDVKILTK--EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
+ EI K L K + G N PS SPDGK +V+ S R+G L+++++ +G
Sbjct: 266 GSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGKKIVYNSDRNGVPQLYIMNS-DGS-- 322
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP---DGSGLRRIHV 530
D+++++ G PSWSP+GD IAF+ D + F++ ++K D RI
Sbjct: 323 -DVQRISFGSGSYAAPSWSPRGDYIAFTKITRG-DGGKTFNIGIMKACPQDDENSERIIT 380
Query: 531 AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590
+G + C+S +G ++F WP+ + G + +D +
Sbjct: 381 SG---------YLVESPCWSPNGRVIMFAKG----------WPSSAKAPGKNKIFAIDLT 421
Query: 591 G 591
G
Sbjct: 422 G 422
>gi|423101989|ref|ZP_17089691.1| protein tolB [Klebsiella oxytoca 10-5242]
gi|423128168|ref|ZP_17115847.1| protein tolB [Klebsiella oxytoca 10-5250]
gi|376390815|gb|EHT03498.1| protein tolB [Klebsiella oxytoca 10-5242]
gi|376395207|gb|EHT07857.1| protein tolB [Klebsiella oxytoca 10-5250]
Length = 430
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+T+G +T PSW P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLGSGQ----IRQVTNGRSNNTEPSWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + SADG+ +
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGTPQRITW---EGSQNQDAD------VSADGKTM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSAG 353
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L V NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGAKLAYVTFESGRSALVVQTLANGS----VRQIASFPQHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ GSG + R+ N + + W +
Sbjct: 261 ALSKTG-----SLNLYVMD--------------LGSGQI-RQVTNGRSNNTEPSWFPDSQ 300
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
NL A ++ P +Y V ++G +R+TW G +N
Sbjct: 301 NL-AFTSDQAGRPQ-------VYKVNINGGTPQRITWEGSQN 334
>gi|288936479|ref|YP_003440538.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella
variicola At-22]
gi|288891188|gb|ADC59506.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella
variicola At-22]
Length = 430
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+T+G +T PSW P
Sbjct: 245 HNGAPAFSPDGAKLAFALSKTGSLNLYVMDLGSGQ----IRQVTNGRSNNTEPSWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + SADG+ +
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGTPQRITW---EGSQNQDAD------VSADGKTM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSAG 353
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L V NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVVQTLANGA----VRQIASFPQHNGAPAFSPDGAKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ GSG + R+ N + + W +
Sbjct: 261 ALSKTG-----SLNLYVMD--------------LGSGQI-RQVTNGRSNNTEPSWFPDSQ 300
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
NL A ++ P +Y V ++G +R+TW G +N
Sbjct: 301 NL-AFTSDQAGRPQ-------VYKVNINGGTPQRITWEGSQN 334
>gi|197106553|ref|YP_002131930.1| translocation protein TolB [Phenylobacterium zucineum HLK1]
gi|196479973|gb|ACG79501.1| periplasmic component of the Tol biopolymer transport system
[Phenylobacterium zucineum HLK1]
Length = 430
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 78/173 (45%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG + F R G+ +++V+ + +LT P IDT PS+SP G I F
Sbjct: 248 PRFSPDGGRVAFSVERGGNSDIYVMSLSSRSST----RLTSDPSIDTSPSFSPDGQRIVF 303
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+S+R + LYV+ DGS RRI G G R +S GE++ FT
Sbjct: 304 NSDRSG-----SAQLYVMGADGSNPRRISF----GQG-----RYTTPVWSPTGEFIAFTK 349
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + V++ DGS R LT + Y + P W P ++
Sbjct: 350 QTGG----------QFH----IGVMRADGSDERLLT-SSYLDEGPTWAPNGRV 387
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 98/239 (41%), Gaps = 27/239 (11%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA 354
Y R GE + + + P VK L ++ +G+ PS+ DG IV F N+
Sbjct: 151 YERLTGEKGYFDTRVVFVAESGPRGKRVKRLAIMDQDGANPSYLTDGSYIVMTPRFSSNS 210
Query: 355 ---GIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411
+ DGS W + + + G +F + R + RV+F
Sbjct: 211 QEITYMSLRPDGSSIWLF---------NLETGRRESLGNFQGMVF-APRFSPDGGRVAFS 260
Query: 412 LDPSDDNNREEI--PCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN 469
++ +++ + + + PS SPDG+ +VF S RSG L+V+
Sbjct: 261 VERGGNSDIYVMSLSSRSSTRLTSDPSIDTSPSFSPDGQRIVFNSDRSGSAQLYVM---- 316
Query: 470 GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
G + R+++ G T P WSP G+ IAF+ F + V++ DGS R +
Sbjct: 317 GADGSNPRRISFGQGRYTTPVWSPTGEFIAFTKQTGG-----QFHIGVMRADGSDERLL 370
Score = 43.1 bits (100), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 35/165 (21%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGS--KRWTLIKDRTAFYNS--WSPTEKHVIYT 390
PSFSPDG IVFN D +A + + +DGS +R + + R Y + WSPT + + +T
Sbjct: 292 PSFSPDGQRIVFNSDRSGSAQLYVMGADGSNPRRISFGQGR---YTTPVWSPTGEFIAFT 348
Query: 391 -STGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF 449
TG F + + R D SD+ ++LT P+ +P+G+
Sbjct: 349 KQTGGQFH-----IGVMRA----DGSDE----------RLLTSSYLDEG--PTWAPNGRV 387
Query: 450 LVF-RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
L+F R G L+ +D G + Q P + P+WSP
Sbjct: 388 LMFSRETPGGAPRLWSVDV-----TGRVLQPMPYPGSGSDPAWSP 427
>gi|85858720|ref|YP_460922.1| tolB protein [Syntrophus aciditrophicus SB]
gi|85721811|gb|ABC76754.1| tolB protein [Syntrophus aciditrophicus SB]
Length = 496
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G N + SPDG+ L+ + G++ ++V+D +G+ +R+LT ID P WSP G
Sbjct: 304 GLNLPGAWSPDGRSLLLTLSKDGNEEIYVMDVRSGQ----VRRLTRNSAIDVSPVWSPDG 359
Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
IAF SN + YV+ DG +RR+ +G
Sbjct: 360 RRIAFVSNISGSPQI-----YVMNADGGDVRRLTYSG 391
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 87/213 (40%), Gaps = 64/213 (30%)
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNG-DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH-NP 507
V R GRS + + +G D+ ++ P + P WSP G +AFSS R P
Sbjct: 228 FVVRQGRSSSLHTV---GFGSQIDGRDLARVAGSPSLILSPRWSPDGRYLAFSSYRDGKP 284
Query: 508 DNVEAFSLYVIKPDGSGLRRI------HVAG---PEG---------------------SG 537
D ++V+ P GSGL++I ++ G P+G SG
Sbjct: 285 D------IFVVSPSGSGLKKIVSFQGLNLPGAWSPDGRSLLLTLSKDGNEEIYVMDVRSG 338
Query: 538 DVDRERINHV-----CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL 592
V R N +S DG + F +N + P +YV+ DG +
Sbjct: 339 QVRRLTRNSAIDVSPVWSPDGRRIAFVSN---ISGSP-----------QIYVMNADGGDV 384
Query: 593 RRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIG 625
RRLT++G N TPAW P GK+ E +G
Sbjct: 385 RRLTYSGNYNTTPAWSPRG----GKIAYEGKVG 413
Score = 43.5 bits (101), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 73/180 (40%), Gaps = 37/180 (20%)
Query: 324 ELRMLRLNGSF---PSFSPDGGLIVFNHDFELNAGIKIAKSDGS--KRWTLIKDRTAFYN 378
++R L N + P +SPDG I F + + I + +DG +R T + YN
Sbjct: 339 QVRRLTRNSAIDVSPVWSPDGRRIAFVSNISGSPQIYVMNADGGDVRRLTY----SGNYN 394
Query: 379 S---WSPTEKHVIYTS-TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE 434
+ WSP + Y G +Q F +D N R+
Sbjct: 395 TTPAWSPRGGKIAYEGKVGSGYQI-----------FSIDEDGGNVRQ---------LTSG 434
Query: 435 TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
G++ FPS SPDG+FL F G + +L+A E +R L + P+WSP+
Sbjct: 435 AGDHEFPSWSPDGRFLTFSLRSGGRSRINILNANTLE----VRTLYESTDRCLGPAWSPR 490
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 93/268 (34%), Gaps = 81/268 (30%)
Query: 307 EGQSTIPHLEPVASPVKELRMLRLNGS-----FPSFSPDGGLIVFNHDFELNAGIKIAKS 361
+G+S+ H S + + R+ GS P +SPDG + F+ + I +
Sbjct: 232 QGRSSSLHTVGFGSQIDGRDLARVAGSPSLILSPRWSPDGRYLAFSSYRDGKPDIFVVSP 291
Query: 362 DGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR 420
GS ++ +WSP + ++ T S D N
Sbjct: 292 SGSGLKKIVSFQGLNLPGAWSPDGRSLLLT-----------------------LSKDGNE 328
Query: 421 EEIPCDVKI-LTKEETGNNAF---PSCSPDGKFLVFRSGRSGHKNLFVLDAVNG------ 470
E DV+ + T N+A P SPDG+ + F S SG ++V++A G
Sbjct: 329 EIYVMDVRSGQVRRLTRNSAIDVSPVWSPDGRRIAFVSNISGSPQIYVMNADGGDVRRLT 388
Query: 471 ----------------------------------EFNGDIRQLTDGPWIDTMPSWSPKGD 496
E G++RQLT G PSWSP G
Sbjct: 389 YSGNYNTTPAWSPRGGKIAYEGKVGSGYQIFSIDEDGGNVRQLTSGAGDHEFPSWSPDGR 448
Query: 497 LIAFS--------SNRHNPDNVEAFSLY 516
+ FS N N + +E +LY
Sbjct: 449 FLTFSLRSGGRSRINILNANTLEVRTLY 476
>gi|375259738|ref|YP_005018908.1| translocation protein TolB [Klebsiella oxytoca KCTC 1686]
gi|397656803|ref|YP_006497505.1| tolB protein [Klebsiella oxytoca E718]
gi|402839667|ref|ZP_10888151.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella sp.
OBRC7]
gi|421724842|ref|ZP_16164048.1| translocation protein TolB [Klebsiella oxytoca M5al]
gi|365909216|gb|AEX04669.1| translocation protein TolB [Klebsiella oxytoca KCTC 1686]
gi|394343284|gb|AFN29405.1| tolB protein precursor [Klebsiella oxytoca E718]
gi|402287593|gb|EJU36032.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella sp.
OBRC7]
gi|410374336|gb|EKP29011.1| translocation protein TolB [Klebsiella oxytoca M5al]
Length = 430
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+T+G +T PSW P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLGSGQ----IRQVTNGRSNNTEPSWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + SADG+ +
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGTPQRITW---EGSQNQDAD------VSADGKTM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSAG 353
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L V NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGAKLAYVTFESGRSALVVQTLANGS----VRQIASFPQHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ GSG + R+ N + + W +
Sbjct: 261 ALSKTG-----SLNLYVMD--------------LGSGQI-RQVTNGRSNNTEPSWFPDSQ 300
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
NL A ++ P +Y V ++G +R+TW G +N
Sbjct: 301 NL-AFTSDQAGRPQ-------VYKVNINGGTPQRITWEGSQN 334
>gi|119944498|ref|YP_942178.1| TolB domain-containing protein [Psychromonas ingrahamii 37]
gi|119863102|gb|ABM02579.1| TolB, N-terminal domain protein [Psychromonas ingrahamii 37]
Length = 437
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 96/241 (39%), Gaps = 42/241 (17%)
Query: 269 RHIEIYDLT----LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKE 324
++I Y+L N N Y+P + ES G L A + +
Sbjct: 111 KYIVTYELVDVVAGNANIADYSPIL--------------ESRRGTVNKTQLRRFAHRISD 156
Query: 325 LRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPT 383
+ +L G F I + + ++I+ DG +++ + + +WSP
Sbjct: 157 VAYEKLTGEKGVFLTRIAYIAVDRKSDYPYQLRISDYDGYNEKLILRSKQPIMSPTWSPD 216
Query: 384 EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSC 443
+ + Y S F+ R+ V I + Q RE + KI N PS
Sbjct: 217 GRKLAYVS----FEHRRSEVYIQDLYSQ-------KRELMTSFPKI--------NGSPSW 257
Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503
SPDGK L + G ++ L+ + +R++T+ IDT P+WSP G+ + F+S
Sbjct: 258 SPDGKSLAIVLSKDGQPEIYTLEIQSKA----LRRITNNRAIDTEPNWSPDGNSLTFTST 313
Query: 504 R 504
R
Sbjct: 314 R 314
Score = 39.3 bits (90), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 65/169 (38%), Gaps = 32/169 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG+ L + S +++ D ++ +T P I+ PSWSP G +A
Sbjct: 211 PTWSPDGRKLAYVSFEHRRSEVYIQDL----YSQKRELMTSFPKINGSPSWSPDGKSLAI 266
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
++ + Y ++ LRRI + +D E +S DG L FT+
Sbjct: 267 VLSKDGQPEI-----YTLEIQSKALRRI-----TNNRAIDTEP----NWSPDGNSLTFTS 312
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G +Y V L +RLTW G N A P
Sbjct: 313 TRGG--------------GPQIYQVDLQSKVTKRLTWEGDLNLGGAITP 347
>gi|187479385|ref|YP_787410.1| translocation protein TolB [Bordetella avium 197N]
gi|119371036|sp|Q2KV91.1|TOLB_BORA1 RecName: Full=Protein TolB; Flags: Precursor
gi|115423972|emb|CAJ50525.1| TolB protein [Bordetella avium 197N]
Length = 441
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 28/178 (15%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A +DG ++ R + +WSP + Y S F S + V + ++
Sbjct: 191 LQVADADGQNPQVALRSREPIISPTWSPDGSKLAYVS----FHSGKPVVYVQTLA----- 241
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
R +IP GNN+ P+ SPDG L + G ++++ A + +
Sbjct: 242 ----TRSQIPV------ANFKGNNSAPAWSPDGSQLAVALTQDGLSQIYIVSA---DGSA 288
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
R++T P IDT P+++P G I F+S+R + Y + DG RR+ G
Sbjct: 289 KPRRITRSPGIDTEPTFTPDGRSIIFTSDRSGGPQI-----YQVGLDGGDARRLTFNG 341
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 69/175 (39%), Gaps = 43/175 (24%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVN------GEFNGDIRQLTDGPWIDTMPSWSPK 494
P+ SPDG L + S SG ++V F G+ ++ P+WSP
Sbjct: 214 PTWSPDGSKLAYVSFHSGKPVVYVQTLATRSQIPVANFKGN----------NSAPAWSPD 263
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
G +A + + + Y++ DGS R P +D E F+ DG
Sbjct: 264 GSQLAVALTQDGLSQI-----YIVSADGSAKPRRITRSP----GIDTE----PTFTPDGR 310
Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
++FT++ P +Y V LDG RRLT+NG N +P P
Sbjct: 311 SIIFTSDRSG-------GPQ-------IYQVGLDGGDARRLTFNGSYNISPRISP 351
>gi|265984714|ref|ZP_06097449.1| tolB [Brucella sp. 83/13]
gi|306837841|ref|ZP_07470703.1| Tol-Pal system beta propeller repeat protein TolB [Brucella sp. NF
2653]
gi|264663306|gb|EEZ33567.1| tolB [Brucella sp. 83/13]
gi|306407080|gb|EFM63297.1| Tol-Pal system beta propeller repeat protein TolB [Brucella sp. NF
2653]
Length = 443
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 13/96 (13%)
Query: 442 SCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFS 501
S SPDG +VF S R G L+V+ G + R+++ G + P WSP+GDLIAF+
Sbjct: 305 SYSPDGSQIVFTSDRGGRPQLYVM----GADGSNPRRISMGDGSYSTPVWSPRGDLIAFT 360
Query: 502 SNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGP 533
FS+ V+K DGSG R + H GP
Sbjct: 361 KQSQG-----QFSIGVMKTDGSGERLLTSGFHNEGP 391
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 78/179 (43%), Gaps = 34/179 (18%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
G P SPDG+ +V + G N++ +D N +LT IDT S+SP
Sbjct: 254 GMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTT----RLTSSQAIDTGASYSPD 309
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
G I F+S+R LYV+ DGS RRI + +GS + +S G+
Sbjct: 310 GSQIVFTSDRGGRPQ-----LYVMGADGSNPRRISMG--DGS-------YSTPVWSPRGD 355
Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+ FT Q Q + V+K DGSG R LT +G+ N P W P ++
Sbjct: 356 LIAFT--------------KQSQGQFSIGVMKTDGSGERLLT-SGFHNEGPTWAPNGRV 399
>gi|206575815|ref|YP_002239638.1| translocation protein TolB [Klebsiella pneumoniae 342]
gi|290510464|ref|ZP_06549834.1| tol-Pal system beta propeller repeat protein TolB [Klebsiella sp.
1_1_55]
gi|226705885|sp|B5XZC1.1|TOLB_KLEP3 RecName: Full=Protein TolB; Flags: Precursor
gi|206564873|gb|ACI06649.1| Tol-Pal system beta propeller repeat protein TolB [Klebsiella
pneumoniae 342]
gi|289777180|gb|EFD85178.1| tol-Pal system beta propeller repeat protein TolB [Klebsiella sp.
1_1_55]
Length = 430
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+T+G +T PSW P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLGSGQ----IRQVTNGRSNNTEPSWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + SADG+ +
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGTPQRITW---EGSQNQDAD------VSADGKTM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSAG 353
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L V NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVVQTLANGA----VRQIASFPQHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ GSG + R+ N + + W +
Sbjct: 261 ALSKTG-----SLNLYVMD--------------LGSGQI-RQVTNGRSNNTEPSWFPDSQ 300
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
NL A ++ P +Y V ++G +R+TW G +N
Sbjct: 301 NL-AFTSDQAGRPQ-------VYKVNINGGTPQRITWEGSQN 334
>gi|56479691|ref|NP_706494.2| translocation protein TolB [Shigella flexneri 2a str. 301]
gi|32699693|sp|Q83MM7.2|TOLB_SHIFL RecName: Full=Protein TolB; Flags: Precursor
gi|56383242|gb|AAN42201.2| periplasmic protein [Shigella flexneri 2a str. 301]
Length = 430
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S+ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDLAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSNG 353
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+L +P +Y V ++G +R+TW G +N
Sbjct: 307 DLAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|17986622|ref|NP_539256.1| translocation protein TolB [Brucella melitensis bv. 1 str. 16M]
gi|260565802|ref|ZP_05836285.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|265991732|ref|ZP_06104289.1| protein tolB [Brucella melitensis bv. 1 str. Rev.1]
gi|32699715|sp|Q93TG4.1|TOLB_BRUME RecName: Full=Protein TolB; Flags: Precursor
gi|13898976|gb|AAK48918.1|AF358662_5 TolB protein [Brucella melitensis]
gi|17982236|gb|AAL51520.1| tolb protein [Brucella melitensis bv. 1 str. 16M]
gi|260151175|gb|EEW86270.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|263002688|gb|EEZ15091.1| protein tolB [Brucella melitensis bv. 1 str. Rev.1]
Length = 443
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 13/96 (13%)
Query: 442 SCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFS 501
S SPDG +VF S R G L+V+ G + R+++ G + P WSP+GDLIAF+
Sbjct: 305 SYSPDGSQIVFTSDRGGRPQLYVM----GADGSNPRRISMGDGSYSTPVWSPRGDLIAFT 360
Query: 502 SNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGP 533
FS+ V+K DGSG R + H GP
Sbjct: 361 KQSQG-----QFSIGVMKTDGSGERLLTSGFHNEGP 391
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 78/179 (43%), Gaps = 34/179 (18%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
G P SPDG+ +V + G N++ +D N +LT IDT S+SP
Sbjct: 254 GMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTT----RLTSSQAIDTGASYSPD 309
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
G I F+S+R LYV+ DGS RRI + +GS + +S G+
Sbjct: 310 GSQIVFTSDRGGRPQ-----LYVMGADGSNPRRISMG--DGS-------YSTPVWSPRGD 355
Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+ FT Q Q + V+K DGSG R LT +G+ N P W P ++
Sbjct: 356 LIAFT--------------KQSQGQFSIGVMKTDGSGERLLT-SGFHNEGPTWAPNGRV 399
>gi|306841416|ref|ZP_07474118.1| Tol-Pal system beta propeller repeat protein TolB [Brucella sp.
BO2]
gi|306844689|ref|ZP_07477274.1| Tol-Pal system beta propeller repeat protein TolB [Brucella
inopinata BO1]
gi|306274861|gb|EFM56631.1| Tol-Pal system beta propeller repeat protein TolB [Brucella
inopinata BO1]
gi|306288522|gb|EFM59874.1| Tol-Pal system beta propeller repeat protein TolB [Brucella sp.
BO2]
Length = 443
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 78/179 (43%), Gaps = 34/179 (18%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
G P SPDG+ +V + G N++ +D N +LT IDT S+SP
Sbjct: 254 GMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTT----RLTSSQAIDTGASYSPD 309
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
G I F+S+R LYV+ DGS RRI + +GS + +S G+
Sbjct: 310 GSQIVFTSDRGGRPQ-----LYVMGADGSNPRRISMG--DGS-------YSTPVWSPRGD 355
Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+ FT Q Q + V+K DGSG R LT +G+ N P W P ++
Sbjct: 356 LIAFT--------------KQSQGQFSIGVMKTDGSGERLLT-SGFHNEGPTWAPNGRV 399
>gi|429089984|ref|ZP_19152716.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
universalis NCTC 9529]
gi|426509787|emb|CCK17828.1| tolB protein precursor, periplasmic protein involved in the
tonb-independent uptake of group A colicins [Cronobacter
universalis NCTC 9529]
Length = 431
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 246 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDIGSGQ----IRQVTDGRSNNTEPTWYPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+A++S++ V Y + +G +R+ EGS + D + S+DG+++
Sbjct: 302 TLAYTSDQAGRPQV-----YKVNINGGAPQRVTW---EGSQNQDAD------VSSDGKFM 347
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 348 VMVSSNG 354
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 30/179 (16%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD-GSKRWTLIKDRTAFYN--SWSPTEK 385
R NG+ P+FSPDG + F + + D GS + + D + +W P +
Sbjct: 245 RHNGA-PAFSPDGSKLAFA--LSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWYPDSQ 301
Query: 386 HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP 445
+ YTS Q+ R Q+ +V N P V E N S
Sbjct: 302 TLAYTSD----QAGRP--QVYKV---------NINGGAPQRVTW----EGSQNQDADVSS 342
Query: 446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
DGKF+V S G +N+ LD V G Q ++D PS +P G ++ +SS++
Sbjct: 343 DGKFMVMVSSNGGAQNIAKLDLVTGGV-----QTLSSTFLDETPSLAPNGTMVIYSSSQ 396
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 38/165 (23%)
Query: 441 PSCSPDGK---FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497
P+ SPDG ++ F SGRS V+ ++ NG +RQ+ P + P++SP G
Sbjct: 206 PAWSPDGSKVAYVTFESGRSA----LVIQTLS---NGAVRQVASFPRHNGAPAFSPDGSK 258
Query: 498 IAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL 557
+AF+ ++ + +LYV+ GSG R G R + D + L
Sbjct: 259 LAFALSKTG-----SLNLYVMD-IGSGQIRQVTDG--------RSNNTEPTWYPDSQTLA 304
Query: 558 FTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+T++ +P +Y V ++G +R+TW G +N
Sbjct: 305 YTSDQAG------------RP--QVYKVNINGGAPQRVTWEGSQN 335
>gi|423107415|ref|ZP_17095110.1| protein tolB [Klebsiella oxytoca 10-5243]
gi|423113295|ref|ZP_17100986.1| protein tolB [Klebsiella oxytoca 10-5245]
gi|376388440|gb|EHT01135.1| protein tolB [Klebsiella oxytoca 10-5243]
gi|376388664|gb|EHT01357.1| protein tolB [Klebsiella oxytoca 10-5245]
Length = 430
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+T+G +T PSW P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLGSGQ----IRQVTNGRSNNTEPSWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + SADG+ +
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGTPQRITW---EGSQNQDAD------VSADGKTM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSAG 353
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L V NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGAKLAYVTFESGRSALVVQTLANGS----VRQIASFPQHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ GSG + R+ N + + W +
Sbjct: 261 ALSKTG-----SLNLYVMD--------------LGSGQI-RQVTNGRSNNTEPSWFPDSQ 300
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
NL A ++ P +Y V ++G +R+TW G +N
Sbjct: 301 NL-AFTSDQAGRPQ-------VYKVNINGGTPQRITWEGSQN 334
>gi|406942188|gb|EKD74481.1| hypothetical protein ACD_44C00427G0005 [uncultured bacterium]
Length = 437
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 114/273 (41%), Gaps = 46/273 (16%)
Query: 353 NAGIKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411
N ++IA +DG + + LI +WS + V Y S F+++RAT+ + V+
Sbjct: 188 NYKLEIADADGYNPQPILISPEPIMSPAWSHRGRKVAYVS----FENKRATIYVTEVA-- 241
Query: 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471
RE++ G N P+ SPD L +SG +++LD
Sbjct: 242 -----TGQREKVSS--------YPGINGAPAWSPDDSKLALVLSKSGFPKIYILDLKTKA 288
Query: 472 FNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA 531
++Q+T G IDT PSW P G + F+S+R + + +Y+ DG + R+ +
Sbjct: 289 ----LQQVTTGSSIDTEPSWFPDGKSLVFTSDRSGGPQI--YRVYLT--DGR-IERLTYS 339
Query: 532 GP---EGSGDVDRERINHVCFSADGEWLLFT-ANLGAVM--------AEPVSWPNQFQ-- 577
GP S + ++ + + +G + F N G+V P PN
Sbjct: 340 GPYNARASVTPEGNKMIMLHRAEEGYTIAFADLNSGSVQLLSRSGRDESPSLAPNGSMVL 399
Query: 578 ---PYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
YG L ++ DG RL E +PAW
Sbjct: 400 FGNEYGVLGIISTDGRVQLRLPAREGEVRSPAW 432
>gi|261315936|ref|ZP_05955133.1| translocation protein TolB [Brucella pinnipedialis M163/99/10]
gi|261316202|ref|ZP_05955399.1| tolB [Brucella pinnipedialis B2/94]
gi|265987265|ref|ZP_06099822.1| protein tolB [Brucella pinnipedialis M292/94/1]
gi|340791297|ref|YP_004756762.1| translocation protein TolB [Brucella pinnipedialis B2/94]
gi|261295425|gb|EEX98921.1| tolB [Brucella pinnipedialis B2/94]
gi|261304962|gb|EEY08459.1| translocation protein TolB [Brucella pinnipedialis M163/99/10]
gi|264659462|gb|EEZ29723.1| protein tolB [Brucella pinnipedialis M292/94/1]
gi|340559756|gb|AEK54994.1| translocation protein TolB precursor [Brucella pinnipedialis B2/94]
Length = 443
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 13/96 (13%)
Query: 442 SCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFS 501
S SPDG +VF S R G L+V+ G + R+++ G + P WSP+GDLIAF+
Sbjct: 305 SYSPDGSQIVFTSDRGGRPQLYVM----GADGSNPRRISMGDGSYSTPVWSPRGDLIAFT 360
Query: 502 SNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGP 533
FS+ V+K DGSG R + H GP
Sbjct: 361 KQSQG-----QFSIGVMKTDGSGERLLTSGFHNEGP 391
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 78/179 (43%), Gaps = 34/179 (18%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
G P SPDG+ +V + G N++ +D N +LT IDT S+SP
Sbjct: 254 GMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTT----RLTSSQAIDTGASYSPD 309
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
G I F+S+R LYV+ DGS RRI + +GS + +S G+
Sbjct: 310 GSQIVFTSDRGGRPQ-----LYVMGADGSNPRRISMG--DGS-------YSTPVWSPRGD 355
Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+ FT Q Q + V+K DGSG R LT +G+ N P W P ++
Sbjct: 356 LIAFT--------------KQSQGQFSIGVMKTDGSGERLLT-SGFHNEGPTWAPNGRV 399
>gi|85374728|ref|YP_458790.1| translocation protein TolB [Erythrobacter litoralis HTCC2594]
gi|84787811|gb|ABC63993.1| Tol biopolymer transport system [Erythrobacter litoralis HTCC2594]
Length = 471
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 112/249 (44%), Gaps = 48/249 (19%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGS-------------FPSFSPDG 341
Y R GES S I ++ P + K L ++ +G+ P +SPD
Sbjct: 192 YSRLTGESPFFDSRIAYIAETGPKDNRTKRLAIMDSDGANHRFITTGRATALTPRYSPDY 251
Query: 342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRT--AFYNSWSPTEKHVIYTSTGPIFQSE 399
+++ + N I I G+ R L+ + T F WSP + ++Y+ +
Sbjct: 252 RRLLYLSYVDGNPRIYIYDI-GTGRQQLVTESTNPTFAPRWSPDGRWILYS------MAV 304
Query: 400 RATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGH 459
I RVS + PS V++ T E G + S SPDG +VF S RSG
Sbjct: 305 NGNTDIYRVSAEGGPS-----------VRLTT--EPGIDVGGSYSPDGSQIVFESDRSGS 351
Query: 460 KNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIK 519
+ ++++++ +G + R+++ P WSP+GD IAF+ + P + F++ V+
Sbjct: 352 QQVYIMNS-DGT---NQRRISFFGGRAATPEWSPRGDQIAFT---YIPGD---FNIAVMS 401
Query: 520 PDGSGLRRI 528
P+G R++
Sbjct: 402 PNGRNFRKL 410
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 35/212 (16%)
Query: 422 EIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD 481
+I + L E T P SPDG+++++ +G+ +++ + A G +R LT
Sbjct: 270 DIGTGRQQLVTESTNPTFAPRWSPDGRWILYSMAVNGNTDIYRVSAEGGP---SVR-LTT 325
Query: 482 GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDR 541
P ID S+SP G I F S+R V Y++ DG+ RRI G
Sbjct: 326 EPGIDVGGSYSPDGSQIVFESDRSGSQQV-----YIMNSDGTNQRRISFFG--------- 371
Query: 542 ERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYE 601
R +S G+ + FT P F ++ V+ +G R+L+ NG++
Sbjct: 372 GRAATPEWSPRGDQIAFT-----------YIPGDF----NIAVMSPNGRNFRKLS-NGWQ 415
Query: 602 NGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFD 633
+ P W P ++ + R E + G Q D
Sbjct: 416 DEAPTWAPNGRI-IQFFRTERNTGRTALYQVD 446
>gi|379714065|ref|YP_005302403.1| translocation protein TolB [Rickettsia massiliae str. AZT80]
gi|376334711|gb|AFB31943.1| translocation protein TolB [Rickettsia massiliae str. AZT80]
Length = 444
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 77/183 (42%), Gaps = 45/183 (24%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ V ++G +++ +D + +LTDG I+T PS+SP G I +
Sbjct: 249 PRFSPDGRKAVMSIAQNGSTHIYEIDLATKR----LHKLTDGFGINTSPSYSPDGKKIVY 304
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+S+R+ LY++ DGS ++RI G + C+S G+++ FT
Sbjct: 305 NSDRNGVPQ-----LYIMNSDGSDVQRISFGGGSYAAP---------CWSPRGDYIAFTK 350
Query: 561 ----------NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPG 610
N+G + A P D R+ +GY +P W P
Sbjct: 351 ITRGDGGKTFNIGIMKACP-----------------QDDENSERIITSGYLVESPCWSPN 393
Query: 611 NQL 613
++
Sbjct: 394 GRV 396
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 27/159 (16%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G N PS SPDGK +V+ S R+G L+++++ D+++++ G P WSP+G
Sbjct: 288 GINTSPSYSPDGKKIVYNSDRNGVPQLYIMNSD----GSDVQRISFGGGSYAAPCWSPRG 343
Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKP---DGSGLRRIHVAGPEGSGDVDRERINHVCFSAD 552
D IAF+ D + F++ ++K D RI +G + C+S +
Sbjct: 344 DYIAFTKITRG-DGGKTFNIGIMKACPQDDENSERIITSG---------YLVESPCWSPN 393
Query: 553 GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG 591
G ++FT WP++ + G + +D +G
Sbjct: 394 GRVIMFTKG----------WPSRAKAPGKNKIFAIDLTG 422
>gi|85710724|ref|ZP_01041788.1| translocation protein TolB precursor [Erythrobacter sp. NAP1]
gi|85687902|gb|EAQ27907.1| translocation protein TolB precursor [Erythrobacter sp. NAP1]
Length = 473
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 101/247 (40%), Gaps = 48/247 (19%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGS-------------FPSFSPDG 341
Y R GES S I ++ P + VK L ++ +G+ P +SPD
Sbjct: 194 YARLTGESPFFDSRIAYIAETGPKDNRVKRLAVMDSDGANHRFLTLGSATALTPRYSPDY 253
Query: 342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRT--AFYNSWSPTEKHVIYTSTGPIFQSE 399
I++ + N I + GS + TL+ + WSP +H++Y+ +
Sbjct: 254 SKILYLSYVDGNPRIYVYDI-GSGQQTLVTENQNPTLAPRWSPDGRHILYS------MAV 306
Query: 400 RATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGH 459
I RV R E D G + S SPDG+ +VF S RSG
Sbjct: 307 AGNTDIYRVPVT------GGRSERLTDTP-------GIDIGGSYSPDGRRIVFESDRSGT 353
Query: 460 KNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIK 519
+ +V+DA + R++T P WSP+GD IAF+ + F++ V+
Sbjct: 354 QQCYVMDA----DGSNQRRITFFGGRCATPEWSPRGDQIAFTRIAGD------FNVAVMT 403
Query: 520 PDGSGLR 526
P G LR
Sbjct: 404 PSGGSLR 410
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 77/192 (40%), Gaps = 34/192 (17%)
Query: 422 EIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD 481
+I + L E P SPDG+ +++ +G+ +++ + G +LTD
Sbjct: 272 DIGSGQQTLVTENQNPTLAPRWSPDGRHILYSMAVAGNTDIYRVPVTGGRSE----RLTD 327
Query: 482 GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDR 541
P ID S+SP G I F S+R YV+ DGS RRI G
Sbjct: 328 TPGIDIGGSYSPDGRRIVFESDRSGTQQC-----YVMDADGSNQRRITFFG--------- 373
Query: 542 ERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYE 601
R +S G+ + FT G ++ V+ G LR LT NG++
Sbjct: 374 GRCATPEWSPRGDQIAFTRIAGDF---------------NVAVMTPSGGSLRVLT-NGWQ 417
Query: 602 NGTPAWHPGNQL 613
+ P W P ++
Sbjct: 418 DEAPTWAPNGRI 429
>gi|398308157|ref|ZP_10511631.1| acylaminoacyl-peptidase [Bacillus mojavensis RO-H-1]
Length = 658
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 27/148 (18%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGH-KNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+A P SPDG+ + F S R G L+++ A GE ++LTD P+ + P WSP G+
Sbjct: 66 SADPRWSPDGRQIAFVSDRDGDVSQLYIMSAEGGE----AKKLTDIPYGVSQPVWSPDGE 121
Query: 497 LI-----------AFSSNRHNPDNVEAFSLYVI--KPDGSGLRRIHVAG----PEGSGDV 539
+ + + PD+ E ++ + K DG GL R A SG+V
Sbjct: 122 SVLVTVSLGDGESVYDQEKTEPDSFEPVEVHGLAYKRDGKGLTRGAYAQLVLVSVKSGEV 181
Query: 540 DR---ERINHV--CFSADGEWLLFTANL 562
+ E+ +H FS DG+ L+F+AN+
Sbjct: 182 KQLTNEKADHFDPAFSPDGKSLVFSANM 209
>gi|82543167|ref|YP_407114.1| translocation protein TolB [Shigella boydii Sb227]
gi|119371060|sp|Q324H2.1|TOLB_SHIBS RecName: Full=Protein TolB; Flags: Precursor
gi|81244578|gb|ABB65286.1| TolB [Shigella boydii Sb227]
Length = 430
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S+ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDLAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLGA 564
+ ++ G
Sbjct: 347 VMVSSNGG 354
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+L +P +Y V ++G +R+TW G +N
Sbjct: 307 DLAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|62290569|ref|YP_222362.1| translocation protein TolB [Brucella abortus bv. 1 str. 9-941]
gi|82700485|ref|YP_415059.1| translocation protein TolB [Brucella melitensis biovar Abortus
2308]
gi|189024787|ref|YP_001935555.1| translocation protein TolB [Brucella abortus S19]
gi|225628265|ref|ZP_03786299.1| Tol-Pal system beta propeller repeat protein TolB [Brucella ceti
str. Cudo]
gi|225853152|ref|YP_002733385.1| translocation protein TolB [Brucella melitensis ATCC 23457]
gi|237816074|ref|ZP_04595070.1| Tol-Pal system beta propeller repeat protein TolB [Brucella abortus
str. 2308 A]
gi|256263356|ref|ZP_05465888.1| protein tolB [Brucella melitensis bv. 2 str. 63/9]
gi|256370106|ref|YP_003107617.1| translocation protein TolB [Brucella microti CCM 4915]
gi|260547187|ref|ZP_05822925.1| tolB [Brucella abortus NCTC 8038]
gi|260755396|ref|ZP_05867744.1| protein tolB [Brucella abortus bv. 6 str. 870]
gi|260758618|ref|ZP_05870966.1| protein tolB [Brucella abortus bv. 4 str. 292]
gi|260762450|ref|ZP_05874787.1| protein tolB [Brucella abortus bv. 2 str. 86/8/59]
gi|260884412|ref|ZP_05896026.1| protein tolB [Brucella abortus bv. 9 str. C68]
gi|261214667|ref|ZP_05928948.1| protein tolB [Brucella abortus bv. 3 str. Tulya]
gi|261222821|ref|ZP_05937102.1| protein tolB [Brucella ceti B1/94]
gi|261325738|ref|ZP_05964935.1| protein tolB [Brucella neotomae 5K33]
gi|261750852|ref|ZP_05994561.1| protein tolB [Brucella suis bv. 5 str. 513]
gi|261757350|ref|ZP_06001059.1| protein tolB [Brucella sp. F5/99]
gi|265995569|ref|ZP_06108126.1| protein tolB [Brucella melitensis bv. 3 str. Ether]
gi|265998780|ref|ZP_06111337.1| protein tolB [Brucella ceti M490/95/1]
gi|294850948|ref|ZP_06791624.1| tol-Pal system beta propeller repeat protein TolB [Brucella sp.
NVSL 07-0026]
gi|297248968|ref|ZP_06932676.1| tol-Pal system beta propeller repeat protein TolB [Brucella abortus
bv. 5 str. B3196]
gi|376272578|ref|YP_005151156.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Brucella abortus A13334]
gi|384212053|ref|YP_005601136.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Brucella melitensis M5-90]
gi|384409163|ref|YP_005597784.1| TolB, N-terminal protein, partial [Brucella melitensis M28]
gi|384445718|ref|YP_005604437.1| translocation protein TolB [Brucella melitensis NI]
gi|423169301|ref|ZP_17156002.1| protein tolB [Brucella abortus bv. 1 str. NI435a]
gi|423172550|ref|ZP_17159223.1| protein tolB [Brucella abortus bv. 1 str. NI474]
gi|423175686|ref|ZP_17162354.1| protein tolB [Brucella abortus bv. 1 str. NI486]
gi|423178756|ref|ZP_17165399.1| protein tolB [Brucella abortus bv. 1 str. NI488]
gi|423181888|ref|ZP_17168527.1| protein tolB [Brucella abortus bv. 1 str. NI010]
gi|423185111|ref|ZP_17171746.1| protein tolB [Brucella abortus bv. 1 str. NI016]
gi|423188265|ref|ZP_17174877.1| protein tolB [Brucella abortus bv. 1 str. NI021]
gi|423191405|ref|ZP_17178012.1| protein tolB [Brucella abortus bv. 1 str. NI259]
gi|75496344|sp|Q57BI3.1|TOLB_BRUAB RecName: Full=Protein TolB; Flags: Precursor
gi|119371037|sp|Q2YRD7.1|TOLB_BRUA2 RecName: Full=Protein TolB; Flags: Precursor
gi|226705866|sp|B2S7D4.1|TOLB_BRUA1 RecName: Full=Protein TolB; Flags: Precursor
gi|254764838|sp|C0REV9.1|TOLB_BRUMB RecName: Full=Protein TolB; Flags: Precursor
gi|62196701|gb|AAX75001.1| TolB, tolB protein [Brucella abortus bv. 1 str. 9-941]
gi|82616586|emb|CAJ11665.1| TolB, N-terminal [Brucella melitensis biovar Abortus 2308]
gi|189020359|gb|ACD73081.1| TolB, N-terminal [Brucella abortus S19]
gi|225616111|gb|EEH13159.1| Tol-Pal system beta propeller repeat protein TolB [Brucella ceti
str. Cudo]
gi|225641517|gb|ACO01431.1| Tol-Pal system beta propeller repeat protein TolB [Brucella
melitensis ATCC 23457]
gi|237788737|gb|EEP62949.1| Tol-Pal system beta propeller repeat protein TolB [Brucella abortus
str. 2308 A]
gi|256000269|gb|ACU48668.1| translocation protein TolB precursor [Brucella microti CCM 4915]
gi|260095552|gb|EEW79430.1| tolB [Brucella abortus NCTC 8038]
gi|260668936|gb|EEX55876.1| protein tolB [Brucella abortus bv. 4 str. 292]
gi|260672876|gb|EEX59697.1| protein tolB [Brucella abortus bv. 2 str. 86/8/59]
gi|260675504|gb|EEX62325.1| protein tolB [Brucella abortus bv. 6 str. 870]
gi|260873940|gb|EEX81009.1| protein tolB [Brucella abortus bv. 9 str. C68]
gi|260916274|gb|EEX83135.1| protein tolB [Brucella abortus bv. 3 str. Tulya]
gi|260921405|gb|EEX88058.1| protein tolB [Brucella ceti B1/94]
gi|261301718|gb|EEY05215.1| protein tolB [Brucella neotomae 5K33]
gi|261737334|gb|EEY25330.1| protein tolB [Brucella sp. F5/99]
gi|261740605|gb|EEY28531.1| protein tolB [Brucella suis bv. 5 str. 513]
gi|262553469|gb|EEZ09238.1| protein tolB [Brucella ceti M490/95/1]
gi|262766853|gb|EEZ12471.1| protein tolB [Brucella melitensis bv. 3 str. Ether]
gi|263093355|gb|EEZ17424.1| protein tolB [Brucella melitensis bv. 2 str. 63/9]
gi|294821591|gb|EFG38587.1| tol-Pal system beta propeller repeat protein TolB [Brucella sp.
NVSL 07-0026]
gi|297174101|gb|EFH33458.1| tol-Pal system beta propeller repeat protein TolB [Brucella abortus
bv. 5 str. B3196]
gi|326409710|gb|ADZ66775.1| TolB, N-terminal protein [Brucella melitensis M28]
gi|326539417|gb|ADZ87632.1| Tol-Pal system beta propeller repeat protein TolB [Brucella
melitensis M5-90]
gi|349743707|gb|AEQ09250.1| translocation protein TolB [Brucella melitensis NI]
gi|363400184|gb|AEW17154.1| Tol-Pal system beta propeller repeat protein TolB [Brucella abortus
A13334]
gi|374535120|gb|EHR06647.1| protein tolB [Brucella abortus bv. 1 str. NI486]
gi|374535313|gb|EHR06839.1| protein tolB [Brucella abortus bv. 1 str. NI474]
gi|374535487|gb|EHR07009.1| protein tolB [Brucella abortus bv. 1 str. NI435a]
gi|374544643|gb|EHR16112.1| protein tolB [Brucella abortus bv. 1 str. NI488]
gi|374544810|gb|EHR16275.1| protein tolB [Brucella abortus bv. 1 str. NI010]
gi|374545088|gb|EHR16552.1| protein tolB [Brucella abortus bv. 1 str. NI016]
gi|374552916|gb|EHR24338.1| protein tolB [Brucella abortus bv. 1 str. NI021]
gi|374553110|gb|EHR24531.1| protein tolB [Brucella abortus bv. 1 str. NI259]
Length = 443
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 78/179 (43%), Gaps = 34/179 (18%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
G P SPDG+ +V + G N++ +D N +LT IDT S+SP
Sbjct: 254 GMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTT----RLTSSQAIDTGASYSPD 309
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
G I F+S+R LYV+ DGS RRI + +GS + +S G+
Sbjct: 310 GSQIVFTSDRGGRPQ-----LYVMGADGSNPRRISMG--DGS-------YSTPVWSPRGD 355
Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+ FT Q Q + V+K DGSG R LT +G+ N P W P ++
Sbjct: 356 LIAFT--------------KQSQGQFSIGVMKTDGSGERLLT-SGFHNEGPTWAPNGRV 399
>gi|23502555|ref|NP_698682.1| translocation protein TolB [Brucella suis 1330]
gi|376281350|ref|YP_005155356.1| translocation protein TolB [Brucella suis VBI22]
gi|384225342|ref|YP_005616506.1| translocation protein TolB [Brucella suis 1330]
gi|32699703|sp|Q8FZ07.1|TOLB_BRUSU RecName: Full=Protein TolB; Flags: Precursor
gi|23348555|gb|AAN30597.1| tolB protein [Brucella suis 1330]
gi|343383522|gb|AEM19014.1| translocation protein TolB [Brucella suis 1330]
gi|358258949|gb|AEU06684.1| translocation protein TolB [Brucella suis VBI22]
Length = 443
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 13/96 (13%)
Query: 442 SCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFS 501
S SPDG +VF S R G L+V+ G + R+++ G + P WSP+GDLIAF+
Sbjct: 305 SYSPDGSQIVFTSDRGGRPQLYVM----GADGSNPRRISMGDGSYSTPVWSPRGDLIAFT 360
Query: 502 SNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGP 533
FS+ V+K DGSG R + H GP
Sbjct: 361 KQSQG-----QFSIGVMKTDGSGERLLTSGFHNEGP 391
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 78/179 (43%), Gaps = 34/179 (18%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
G P SPDG+ +V + G N++ +D N +LT IDT S+SP
Sbjct: 254 GMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTT----RLTSSQAIDTGASYSPD 309
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
G I F+S+R LYV+ DGS RRI + +GS + +S G+
Sbjct: 310 GSQIVFTSDRGGRPQ-----LYVMGADGSNPRRISMG--DGS-------YSTPVWSPRGD 355
Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+ FT Q Q + V+K DGSG R LT +G+ N P W P ++
Sbjct: 356 LIAFT--------------KQSQGQFSIGVMKTDGSGERLLT-SGFHNEGPTWAPNGRV 399
>gi|161619626|ref|YP_001593513.1| translocation protein TolB [Brucella canis ATCC 23365]
gi|260568782|ref|ZP_05839250.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|376275698|ref|YP_005116137.1| Tol biopolymer transport system periplasmic protein [Brucella canis
HSK A52141]
gi|189035979|sp|A9M7J5.1|TOLB_BRUC2 RecName: Full=Protein TolB; Flags: Precursor
gi|161336437|gb|ABX62742.1| Tol-Pal system beta propeller repeat protein TolB [Brucella canis
ATCC 23365]
gi|260154166|gb|EEW89248.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|363404265|gb|AEW14560.1| Periplasmic component of the Tol biopolymer transport system
[Brucella canis HSK A52141]
Length = 443
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 13/96 (13%)
Query: 442 SCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFS 501
S SPDG +VF S R G L+V+ G + R+++ G + P WSP+GDLIAF+
Sbjct: 305 SYSPDGSQIVFTSDRGGRPQLYVM----GADGSNPRRISMGDGSYSTPVWSPRGDLIAFT 360
Query: 502 SNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGP 533
FS+ V+K DGSG R + H GP
Sbjct: 361 KQSQG-----QFSIGVMKTDGSGERLLTSGFHNEGP 391
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 78/179 (43%), Gaps = 34/179 (18%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
G P SPDG+ +V + G N++ +D N +LT IDT S+SP
Sbjct: 254 GMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTT----RLTSSQAIDTGASYSPD 309
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
G I F+S+R LYV+ DGS RRI + +GS + +S G+
Sbjct: 310 GSQIVFTSDRGGRPQ-----LYVMGADGSNPRRISMG--DGS-------YSTPVWSPRGD 355
Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+ FT Q Q + V+K DGSG R LT +G+ N P W P ++
Sbjct: 356 LIAFT--------------KQSQGQFSIGVMKTDGSGERLLT-SGFHNEGPTWAPNGRV 399
>gi|148560006|ref|YP_001259549.1| translocation protein TolB [Brucella ovis ATCC 25840]
gi|166229975|sp|A5VS52.1|TOLB_BRUO2 RecName: Full=Protein TolB; Flags: Precursor
gi|148371263|gb|ABQ61242.1| Tol-Pal system beta propeller repeat protein TolB [Brucella ovis
ATCC 25840]
Length = 443
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 13/96 (13%)
Query: 442 SCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFS 501
S SPDG +VF S R G L+V+ G + R+++ G + P WSP+GDLIAF+
Sbjct: 305 SYSPDGSQIVFTSDRGGRPQLYVM----GADGSNPRRISMGDGSYSTPVWSPRGDLIAFT 360
Query: 502 SNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGP 533
FS+ V+K DGSG R + H GP
Sbjct: 361 KQSQG-----QFSIGVMKTDGSGERLLTSGFHNEGP 391
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 78/179 (43%), Gaps = 34/179 (18%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
G P SPDG+ +V + G N++ +D N +LT IDT S+SP
Sbjct: 254 GMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTT----RLTSSQAIDTGASYSPD 309
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
G I F+S+R LYV+ DGS RRI + +GS + +S G+
Sbjct: 310 GSQIVFTSDRGGRPQ-----LYVMGADGSNPRRISMG--DGS-------YSTPVWSPRGD 355
Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+ FT Q Q + V+K DGSG R LT +G+ N P W P ++
Sbjct: 356 LIAFT--------------KQSQGQFSIGVMKTDGSGERLLT-SGFHNEGPTWAPNGRV 399
>gi|402703806|ref|ZP_10851785.1| translocation protein TolB [Rickettsia helvetica C9P9]
Length = 444
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 127/301 (42%), Gaps = 37/301 (12%)
Query: 298 YHRFRGESTEGQSTIPHLEPVAS--PVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG 355
Y + G++ + I ++ +S +K + ++ +G+ + +G +V F +A
Sbjct: 152 YEKITGDAGYFDTKIVYVSESSSLPKIKRIALMDYDGANNKYLTNGKSLVLTPRFARSAD 211
Query: 356 IKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS 415
S +KR L+ Y T K + I + R + + + +
Sbjct: 212 KIFYVSYATKRRALV------YEKDLKTGKESVVGDFSGISFAPRFSPDGRKAVMSIAKN 265
Query: 416 DDNNREEIPCDVKILTK--EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
+ EI K L K + G N PS SPDGK +V+ S R+G L+++++ +G
Sbjct: 266 GSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGKKIVYNSDRNGVPQLYIMNS-DGS-- 322
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP---DGSGLRRIHV 530
D+++++ G PSWSP+GD IAF+ D + F++ ++K D RI
Sbjct: 323 -DVQRISFGGGSYAAPSWSPRGDYIAFTKITRG-DGGKTFNIGIMKACPQDDENSERIIT 380
Query: 531 AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590
+G + C+S +G ++F WP++ + G + +D +
Sbjct: 381 SG---------YLVESPCWSPNGRVIMFAKG----------WPSRAKAPGKNKIFAIDLT 421
Query: 591 G 591
G
Sbjct: 422 G 422
>gi|344343828|ref|ZP_08774694.1| Protein tolB [Marichromatium purpuratum 984]
gi|343804439|gb|EGV22339.1| Protein tolB [Marichromatium purpuratum 984]
Length = 433
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 106/282 (37%), Gaps = 57/282 (20%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A +DG ++ + +WSP + + Y S F+S R + +
Sbjct: 184 LQVADADGYNPQVIVSSTEPIMSPAWSPDGRRIAYVS----FESRRPAIYV--------- 230
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+E+ + G N+ P+ SPDG+ L + G+ ++VLD +
Sbjct: 231 ------QELASGRRERVASYPGINSSPAFSPDGRRLAMTLSKDGNPEIYVLDLDSRALT- 283
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR-HNPDNVEAFSLYVIKPDGSGLRRIHVAG- 532
+LT+ IDT P+WSP G + F+S R NP +Y + G + R+ G
Sbjct: 284 ---RLTNHFAIDTEPAWSPDGSHLVFTSGRGGNPQ------IYRVPASGGAVSRVSFEGD 334
Query: 533 --------PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAE-PVSWPNQFQPYGDLY 583
P+G RIN A L +++ P+ F P +
Sbjct: 335 YNASPVYAPDGRSIAMARRINGAFRIA---LLDVERGFSRLLSRGPLDESPSFAPNSSMV 391
Query: 584 V-------------VKLDGSGLRRLTWNGYENGTPAWHPGNQ 612
+ +DG +RLT + PAW P Q
Sbjct: 392 IYATTHGGRAVLAAAAVDGGANQRLTQGTDQVREPAWSPMVQ 433
Score = 42.0 bits (97), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 35/177 (19%)
Query: 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN--SWSPTEKHVIYT 390
S P+FSPDG + + N I + D S+ T + + A +WSP H+++T
Sbjct: 249 SSPAFSPDGRRLAMTLSKDGNPEIYVLDLD-SRALTRLTNHFAIDTEPAWSPDGSHLVFT 307
Query: 391 S----TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD 446
S I++ + ++RVSF+ D NA P +PD
Sbjct: 308 SGRGGNPQIYRVPASGGAVSRVSFEGD-----------------------YNASPVYAPD 344
Query: 447 GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503
G+ + +G + +LD G F+ R L+ GP +D PS++P ++ +++
Sbjct: 345 GRSIAMARRINGAFRIALLDVERG-FS---RLLSRGP-LDESPSFAPNSSMVIYATT 396
>gi|390166707|ref|ZP_10218964.1| translocation protein TolB [Sphingobium indicum B90A]
gi|389590423|gb|EIM68414.1| translocation protein TolB [Sphingobium indicum B90A]
Length = 444
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 103/260 (39%), Gaps = 56/260 (21%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ I SDG+ R+ A +SP K ++Y S + + R + +
Sbjct: 194 LAIMDSDGANHRFITNGQSIALTPRFSPDYKSIVYVS----YLNNRVRIYV--------- 240
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+I + L E + P SPDG+ ++F +G+ +++ + + G
Sbjct: 241 ------YDIGTGKQRLVTESSNATFAPRWSPDGRNILFSMAIAGNTDIYRVSSGGGA--- 291
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
++LT P ID S+SP G I F S+R + YV+ DGSG RRI G
Sbjct: 292 -PQRLTTAPGIDVGGSYSPDGRQIVFESDRSGSQQI-----YVMNADGSGQRRISHGG-- 343
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LR 593
R +S G+ + FT + GD + + SG
Sbjct: 344 -------GRYATPEWSPRGDLIAFT-----------------KISGDFKIAVMTPSGDNE 379
Query: 594 RLTWNGYENGTPAWHPGNQL 613
R+ NG+++ P+W P ++
Sbjct: 380 RILTNGWQDEQPSWSPNGRV 399
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 106/288 (36%), Gaps = 80/288 (27%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGS-------------FPSFSPDG 341
Y R GES S I ++ P + K L ++ +G+ P FSPD
Sbjct: 164 YARLSGESPFFDSRIAYIAESGPKGNRTKRLAIMDSDGANHRFITNGQSIALTPRFSPDY 223
Query: 342 GLIVFNHDFELNAGIKIAKSD---GSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQS 398
IV+ LN ++I D G +R F WSP ++++++ +
Sbjct: 224 KSIVYVS--YLNNRVRIYVYDIGTGKQRLVTESSNATFAPRWSPDGRNILFS------MA 275
Query: 399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG 458
I RVS + P + + G S SPDG+ +VF S RSG
Sbjct: 276 IAGNTDIYRVS---------SGGGAPQRLTTAPGIDVGG----SYSPDGRQIVFESDRSG 322
Query: 459 HKNLFVLDA-------------------------------VNGEF-------NGDIRQLT 480
+ ++V++A ++G+F +GD ++
Sbjct: 323 SQQIYVMNADGSGQRRISHGGGRYATPEWSPRGDLIAFTKISGDFKIAVMTPSGDNERIL 382
Query: 481 DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
W D PSWSP G ++ F R P + ++ + G RRI
Sbjct: 383 TNGWQDEQPSWSPNGRVLQFF--RTTPGREGSSQVWQVDLTGVNERRI 428
>gi|157964377|ref|YP_001499201.1| translocation protein TolB [Rickettsia massiliae MTU5]
gi|166988078|sp|A8F168.1|TOLB_RICM5 RecName: Full=Protein TolB; Flags: Precursor
gi|157844153|gb|ABV84654.1| TolB protein precursor [Rickettsia massiliae MTU5]
Length = 444
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 27/159 (16%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G N PS SPDGK +V+ S R+G L+++++ +G D+++++ G PSWSP+G
Sbjct: 288 GINTSPSYSPDGKKIVYNSDRNGVPQLYIMNS-DGS---DVQRISFGGGSYAAPSWSPRG 343
Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKP---DGSGLRRIHVAGPEGSGDVDRERINHVCFSAD 552
D IAF+ D + F++ ++K D RI +G + C+S +
Sbjct: 344 DYIAFTKITRG-DGGKTFNIGIMKACPQDDENSERIITSG---------YLVESPCWSPN 393
Query: 553 GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG 591
G ++FT WP++ + G + +D +G
Sbjct: 394 GRVIMFTK----------GWPSRAKAPGKNKIFAIDLTG 422
>gi|118574600|sp|Q2LRP7.2|TOLB_SYNAS RecName: Full=Protein TolB; Flags: Precursor
Length = 452
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503
SPDG+ L+ + G++ ++V+D +G+ +R+LT ID P WSP G IAF SN
Sbjct: 268 SPDGRSLLLTLSKDGNEEIYVMDVRSGQ----VRRLTRNSAIDVSPVWSPDGRRIAFVSN 323
Query: 504 RHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
+ YV+ DG +RR+ +G
Sbjct: 324 ISGSPQI-----YVMNADGGDVRRLTYSG 347
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 78/187 (41%), Gaps = 60/187 (32%)
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHN-PDNVEAFSLYVIKPDGSGLRRI----- 528
D+ ++ P + P WSP G +AFSS R PD ++V+ P GSGL++I
Sbjct: 207 DLARVAGSPSLILSPRWSPDGRYLAFSSYRDGKPD------IFVVSPSGSGLKKIVSFQG 260
Query: 529 -HVAG---PEG---------------------SGDVDRERINHV-----CFSADGEWLLF 558
++ G P+G SG V R N +S DG + F
Sbjct: 261 LNLPGAWSPDGRSLLLTLSKDGNEEIYVMDVRSGQVRRLTRNSAIDVSPVWSPDGRRIAF 320
Query: 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKL 618
+N + P +YV+ DG +RRLT++G N TPAW P GK+
Sbjct: 321 VSN---ISGSP-----------QIYVMNADGGDVRRLTYSGNYNTTPAWSPRG----GKI 362
Query: 619 RLEDDIG 625
E +G
Sbjct: 363 AYEGKVG 369
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 77/196 (39%), Gaps = 34/196 (17%)
Query: 305 STEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGS 364
S +G I ++ + V+ L P +SPDG I F + + I + +DG
Sbjct: 279 SKDGNEEIYVMDVRSGQVRRLTRNSAIDVSPVWSPDGRRIAFVSNISGSPQIYVMNADGG 338
Query: 365 --KRWTLIKDRTAFYN---SWSPTEKHVIYTS-TGPIFQSERATVQIARVSFQLDPSDDN 418
+R T + YN +WSP + Y G +Q F +D N
Sbjct: 339 DVRRLTY----SGNYNTTPAWSPRGGKIAYEGKVGSGYQI-----------FSIDEDGGN 383
Query: 419 NREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ 478
R+ G++ FPS SPDG+FL F G + +L+A E +R
Sbjct: 384 VRQ---------LTSGAGDHEFPSWSPDGRFLTFSLRSGGRSRINILNANTLE----VRT 430
Query: 479 LTDGPWIDTMPSWSPK 494
L + P+WSP+
Sbjct: 431 LYESTDRCLGPAWSPR 446
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 93/268 (34%), Gaps = 81/268 (30%)
Query: 307 EGQSTIPHLEPVASPVKELRMLRLNGS-----FPSFSPDGGLIVFNHDFELNAGIKIAKS 361
+G+S+ H S + + R+ GS P +SPDG + F+ + I +
Sbjct: 188 QGRSSSLHTVGFGSQIDGRDLARVAGSPSLILSPRWSPDGRYLAFSSYRDGKPDIFVVSP 247
Query: 362 DGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR 420
GS ++ +WSP + ++ T S D N
Sbjct: 248 SGSGLKKIVSFQGLNLPGAWSPDGRSLLLT-----------------------LSKDGNE 284
Query: 421 EEIPCDVKI-LTKEETGNNAF---PSCSPDGKFLVFRSGRSGHKNLFVLDAVNG------ 470
E DV+ + T N+A P SPDG+ + F S SG ++V++A G
Sbjct: 285 EIYVMDVRSGQVRRLTRNSAIDVSPVWSPDGRRIAFVSNISGSPQIYVMNADGGDVRRLT 344
Query: 471 ----------------------------------EFNGDIRQLTDGPWIDTMPSWSPKGD 496
E G++RQLT G PSWSP G
Sbjct: 345 YSGNYNTTPAWSPRGGKIAYEGKVGSGYQIFSIDEDGGNVRQLTSGAGDHEFPSWSPDGR 404
Query: 497 LIAFS--------SNRHNPDNVEAFSLY 516
+ FS N N + +E +LY
Sbjct: 405 FLTFSLRSGGRSRINILNANTLEVRTLY 432
>gi|338737859|ref|YP_004674821.1| protein tolB [Hyphomicrobium sp. MC1]
gi|337758422|emb|CCB64247.1| protein tolB precursor [Hyphomicrobium sp. MC1]
Length = 448
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 13/105 (12%)
Query: 433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
+ G + PS SPDG +VF S R G + L+V+++ + ++ G + P WS
Sbjct: 299 QSNGIDTSPSYSPDGSQIVFESDRGGRQQLWVMNSD----GSNQHPISGGDGTYSTPVWS 354
Query: 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGP 533
P+GD IAF+ F + V+KPDGSG R++ H GP
Sbjct: 355 PRGDYIAFTKQAGG-----QFIIGVMKPDGSGERQLTSGFHNEGP 394
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 34/174 (19%)
Query: 441 PSCSPDGKFLVFRSGR-SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
P SPDG+ ++ GR G +++ +D + + R+LT IDT PS+SP G I
Sbjct: 262 PRFSPDGQRVIMSLGRPDGGSDIYEMDLRSRQ----PRRLTQSNGIDTSPSYSPDGSQIV 317
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559
F S+R L+V+ DGS I +G +G+ + +S G+++ FT
Sbjct: 318 FESDRGGRQQ-----LWVMNSDGSNQHPI--SGGDGT-------YSTPVWSPRGDYIAFT 363
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + V+K DGSG R+LT +G+ N P W P ++
Sbjct: 364 KQAGG----------QFI----IGVMKPDGSGERQLT-SGFHNEGPTWAPNGRV 402
>gi|406598332|ref|YP_006749462.1| amidohydrolase [Alteromonas macleodii ATCC 27126]
gi|406375653|gb|AFS38908.1| amidohydrolase [Alteromonas macleodii ATCC 27126]
Length = 1111
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 10/126 (7%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMPSWSPKGD 496
N PS SPDGK + F S + G N++V+D ++G ++RQ+T + + P WSP G+
Sbjct: 103 NIHPSISPDGKQIAFISDKDGLSNVWVMD-IDGS---NLRQVTKEKSNLIHSPKWSPDGE 158
Query: 497 LIAFSSNRHNPDNVEAFSLYVI-KPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW 555
+ + + ++ A +++ K G GL+ SG D++ I FS DG++
Sbjct: 159 YLVVTKGIMSSRSIPAGEIWMYHKSGGDGLQ----IKARNSGKRDQQNIADPVFSHDGKY 214
Query: 556 LLFTAN 561
+ FT N
Sbjct: 215 IYFTEN 220
>gi|258543663|ref|YP_003189096.1| translocation protein TolB [Acetobacter pasteurianus IFO 3283-01]
gi|384043581|ref|YP_005482325.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-12]
gi|384052098|ref|YP_005479161.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-03]
gi|384055207|ref|YP_005488301.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-07]
gi|384058440|ref|YP_005491107.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-22]
gi|384061081|ref|YP_005500209.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-26]
gi|384064373|ref|YP_005485015.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-32]
gi|384120386|ref|YP_005503010.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256634741|dbj|BAI00717.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-01]
gi|256637797|dbj|BAI03766.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-03]
gi|256640851|dbj|BAI06813.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-07]
gi|256643906|dbj|BAI09861.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-22]
gi|256646961|dbj|BAI12909.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-26]
gi|256650014|dbj|BAI15955.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-32]
gi|256653004|dbj|BAI18938.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256656058|dbj|BAI21985.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus IFO 3283-12]
Length = 454
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 35/174 (20%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ +V R+G +L+++D +G RQ+T IDT P +SP G I F
Sbjct: 266 PRFSPDGRSVVLSVTRNGGSDLYIVDLASGSR----RQITSSGAIDTSPCFSPDGSQIVF 321
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSADGEWLLFT 559
+S+R + Y++ G G RRI G GS +S G+ + FT
Sbjct: 322 NSDRGGSPQI-----YIMPASGGGARRISYGQGTYGS----------PVWSPRGDLIAFT 366
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + L V+ DG+G R +T G+ +P++ P ++
Sbjct: 367 RIAGGMFS--------------LGVMAPDGTGERIMT-QGFTVESPSFCPNGRV 405
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 73/198 (36%), Gaps = 54/198 (27%)
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDN 509
+ RSG GH+ + AV + + R LT G W+ P +SP D IAF S +N
Sbjct: 185 FISRSGPRGHQRTRL--AVMDQDGANARMLTTGKWLTLTPRFSPVKDQIAFMSYANNRPR 242
Query: 510 VEAFSLY-----------------------------VIKPDGSGLRRIHVAGPE-----G 535
V F L V + GS L + +A
Sbjct: 243 VYLFDLTSGRQQILGEFEGISFAPRFSPDGRSVVLSVTRNGGSDLYIVDLASGSRRQITS 302
Query: 536 SGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL 595
SG +D CFS DG ++F ++ G P +Y++ G G RR+
Sbjct: 303 SGAID----TSPCFSPDGSQIVFNSDRG---GSP-----------QIYIMPASGGGARRI 344
Query: 596 TWNGYENGTPAWHPGNQL 613
++ G+P W P L
Sbjct: 345 SYGQGTYGSPVWSPRGDL 362
>gi|190893275|ref|YP_001979817.1| translocation protein TolB [Rhizobium etli CIAT 652]
gi|226705888|sp|B3PYX5.1|TOLB_RHIE6 RecName: Full=Protein TolB; Flags: Precursor
gi|190698554|gb|ACE92639.1| protein transporter, uptake component protein [Rhizobium etli CIAT
652]
Length = 436
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + IDT PS+SP G ++F
Sbjct: 253 PRFSPDGQKVIMSLQQEGNSNIYTMDLRSRTTTRLTSTAA----IDTSPSYSPDGARVSF 308
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGSG RI +GS + +S G+ + FT
Sbjct: 309 ESDRGGKPQI-----YVMNADGSGQTRISFG--DGS-------YSTPVWSPRGDLIAFTK 354
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT G+ N P W P ++
Sbjct: 355 QAGGKFS--------------IGVMKPDGSGERILT-TGFHNEGPTWAPNGRV 392
>gi|218510315|ref|ZP_03508193.1| translocation protein TolB [Rhizobium etli Brasil 5]
Length = 436
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + IDT PS+SP G ++F
Sbjct: 253 PRFSPDGQKVIMSLQQEGNSNIYTMDLRSRTTTRLTSTAA----IDTSPSYSPDGARVSF 308
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGSG RI +GS + +S G+ + FT
Sbjct: 309 ESDRGGKPQI-----YVMNADGSGQTRISFG--DGS-------YSTPVWSPRGDLIAFTK 354
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT G+ N P W P ++
Sbjct: 355 QAGGKFS--------------IGVMKPDGSGERILT-TGFHNEGPTWAPNGRV 392
>gi|407685325|ref|YP_006800499.1| amidohydrolase [Alteromonas macleodii str. 'English Channel 673']
gi|407246936|gb|AFT76122.1| amidohydrolase [Alteromonas macleodii str. 'English Channel 673']
Length = 1111
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 10/126 (7%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMPSWSPKGD 496
N PS SPDGK + F S + G N++V+D ++G ++RQ+T + + P WSP G+
Sbjct: 103 NIHPSISPDGKQIAFISDKDGLSNVWVMD-IDGS---NLRQVTKEKSNLIHSPKWSPDGE 158
Query: 497 LIAFSSNRHNPDNVEAFSLYVI-KPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW 555
+ + + ++ A +++ K G GL+ SG D++ I FS DG++
Sbjct: 159 YLVVTKGIMSSRSIPAGEIWMYHKSGGDGLQ----IKARNSGKRDQQNIADPVFSHDGKY 214
Query: 556 LLFTAN 561
+ FT N
Sbjct: 215 IYFTEN 220
>gi|383779190|ref|YP_005463756.1| hypothetical protein AMIS_40200 [Actinoplanes missouriensis 431]
gi|381372422|dbj|BAL89240.1| hypothetical protein AMIS_40200 [Actinoplanes missouriensis 431]
Length = 834
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 122/307 (39%), Gaps = 64/307 (20%)
Query: 309 QSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH-DFELNAGIKIAKSDGSKRW 367
+ TI L P + L + P +S D +I H + + I + DGS R
Sbjct: 583 KPTIQTLNPATGKREPLAGTEPGDTLPRWSNDRSMIALTHRNPKGTNEIVVMDRDGSNRR 642
Query: 368 TLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDV 427
L+ T W+P + + Y + E QI F + P D E+I
Sbjct: 643 KLVGGVTGGRVVWAPDNRTLAY------IKDEDGVPQI----FTM-PIDGGRAEQITV-- 689
Query: 428 KILTKEETGNNAF-PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID 486
+GN+ P +PDGK +++ + G ++L+ + +V+G D R +T+ D
Sbjct: 690 -------SGNDKDDPVWTPDGKSIIYWTKVDGVRSLWKI-SVSG--VSDNRAITNPDLGD 739
Query: 487 TM-PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERIN 545
M P+ SP G LI F+ N + ++ ++PDGS + + A DRE
Sbjct: 740 AMDPAISPDGRLILFTRKIDN-----NYDIWSVEPDGSDAKPVTSA-------ADREM-- 785
Query: 546 HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDL-----YVVKLDGSGLRRLTWNGY 600
+S DG WL + GDL + + DG+G + LT G
Sbjct: 786 DPTWSPDGAWLAYV-------------------RGDLNHPAVVIERADGTGEQTLTKGGA 826
Query: 601 ENGTPAW 607
G P W
Sbjct: 827 REGHPCW 833
>gi|219847846|ref|YP_002462279.1| WD40 domain-containing protein [Chloroflexus aggregans DSM 9485]
gi|219542105|gb|ACL23843.1| WD40 domain protein beta Propeller [Chloroflexus aggregans DSM
9485]
Length = 629
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 9/86 (10%)
Query: 434 ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
+ N+ F SPDGK + F S R G+ ++V+++ ++R+LT+ P D P+WSP
Sbjct: 529 QNANDRFARVSPDGKQIAFASDRDGNWEIYVMNSDGS----NVRRLTNNPATDDAPTWSP 584
Query: 494 KGDLIAFSSNRHNPDNVEAFSLYVIK 519
G +AF+S+R F +Y++
Sbjct: 585 DGRQLAFASDRDG-----DFEIYILN 605
>gi|421849003|ref|ZP_16281988.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus NBRC 101655]
gi|421852945|ref|ZP_16285627.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471]
gi|371460272|dbj|GAB27191.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus NBRC 101655]
gi|371478796|dbj|GAB30830.1| secretion system type I outer membrane protein TolB [Acetobacter
pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471]
Length = 454
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 35/174 (20%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ +V R+G +L+++D +G RQ+T IDT P +SP G I F
Sbjct: 266 PRFSPDGRSVVLSVTRNGGSDLYIVDLASGSR----RQITSSGAIDTSPCFSPDGSQIVF 321
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSADGEWLLFT 559
+S+R + Y++ G G RRI G GS +S G+ + FT
Sbjct: 322 NSDRGGSPQI-----YIMPASGGGARRISYGQGTYGS----------PVWSPRGDLIAFT 366
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + L V+ DG+G R +T G+ +P++ P ++
Sbjct: 367 RIAGGMFS--------------LGVMAPDGTGERIMT-QGFTVESPSFCPNGRV 405
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 73/198 (36%), Gaps = 54/198 (27%)
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDN 509
+ RSG GH+ + AV + + R LT G W+ P +SP D IAF S +N
Sbjct: 185 FISRSGPRGHQRTRL--AVMDQDGANARMLTTGKWLTLTPRFSPVKDQIAFMSYANNRPR 242
Query: 510 VEAFSLY-----------------------------VIKPDGSGLRRIHVAGPE-----G 535
V F L V + GS L + +A
Sbjct: 243 VYLFDLTSGRQQILGEFEGISFAPRFSPDGRSVVLSVTRNGGSDLYIVDLASGSRRQITS 302
Query: 536 SGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL 595
SG +D CFS DG ++F ++ G P +Y++ G G RR+
Sbjct: 303 SGAID----TSPCFSPDGSQIVFNSDRG---GSP-----------QIYIMPASGGGARRI 344
Query: 596 TWNGYENGTPAWHPGNQL 613
++ G+P W P L
Sbjct: 345 SYGQGTYGSPVWSPRGDL 362
>gi|407692693|ref|YP_006817482.1| translocation protein TolB [Actinobacillus suis H91-0380]
gi|407388750|gb|AFU19243.1| translocation protein TolB [Actinobacillus suis H91-0380]
Length = 426
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 40/206 (19%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++++ DG +T++K R + WSP + Y + F++++A V +
Sbjct: 182 LRVSDYDGYNAFTVVKSREPLMSPEWSPDGSRLAYVT----FENKKAQVVV--------- 228
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++ + + G+N P+ SPDG + F S + G +++V+ A NG G
Sbjct: 229 ------HDLRSGSRRIVAALRGHNGAPAFSPDGSRIAFASNQDGELDIYVVGA-NG---G 278
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
+LT +T PSWSP G I F+S+R V Y + G G A P
Sbjct: 279 KPSKLTANAGNNTEPSWSPDGSTIYFTSDRAGSPQV-----YRMSSSGGG------ASPM 327
Query: 535 GSGDVDRERINHVCFSADGEWLLFTA 560
G ++ S+DG+ L+ A
Sbjct: 328 GGSGSYNAKV-----SSDGKNLIMIA 348
>gi|365105405|ref|ZP_09334652.1| protein tolB [Citrobacter freundii 4_7_47CFAA]
gi|395227442|ref|ZP_10405768.1| protein tolB [Citrobacter sp. A1]
gi|420370523|ref|ZP_14871074.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 1235-66]
gi|424728854|ref|ZP_18157459.1| protein tolB [Citrobacter sp. L17]
gi|363643420|gb|EHL82738.1| protein tolB [Citrobacter freundii 4_7_47CFAA]
gi|391320185|gb|EIQ77082.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri 1235-66]
gi|394718770|gb|EJF24391.1| protein tolB [Citrobacter sp. A1]
gi|422896725|gb|EKU36507.1| protein tolB [Citrobacter sp. L17]
gi|455641509|gb|EMF20680.1| translocation protein TolB [Citrobacter freundii GTC 09479]
Length = 430
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDIGSGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNVNGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTAN 561
+ ++
Sbjct: 347 VMVSS 351
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLSNGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ GSG + R+ + + + W +
Sbjct: 261 ALSKTG-----SLNLYVMD--------------IGSGQI-RQVTDGRSNNTEPTWFPDSQ 300
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
NL A ++ P +Y V ++G +R+TW G +N
Sbjct: 301 NL-AFTSDQAGRPQ-------VYKVNVNGGAPQRITWEGSQN 334
>gi|322514836|ref|ZP_08067855.1| tol-Pal system beta propeller repeat protein TolB [Actinobacillus
ureae ATCC 25976]
gi|322119218|gb|EFX91359.1| tol-Pal system beta propeller repeat protein TolB [Actinobacillus
ureae ATCC 25976]
Length = 426
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 40/206 (19%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++++ DG +T++K R + WSP + Y + F++++A V +
Sbjct: 182 LRVSDYDGYNAFTVVKSREPLMSPEWSPDGSRLAYVT----FENKKAQVVV--------- 228
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++ + + G+N P+ SPDG + F S + G +++V+ A NG G
Sbjct: 229 ------HDLRSGSRRIVAALRGHNGAPAFSPDGSRIAFASNQDGELDIYVVGA-NG---G 278
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
+LT +T PSWSP G I F+S+R V Y + G G A P
Sbjct: 279 KPSKLTANAGNNTEPSWSPDGSTIYFTSDRAGSPQV-----YRMSSSGGG------ASPM 327
Query: 535 GSGDVDRERINHVCFSADGEWLLFTA 560
G ++ S+DG+ L+ A
Sbjct: 328 GGSGSYNAKV-----SSDGKNLIMIA 348
>gi|237730721|ref|ZP_04561202.1| translocation protein TolB [Citrobacter sp. 30_2]
gi|226906260|gb|EEH92178.1| translocation protein TolB [Citrobacter sp. 30_2]
Length = 431
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 246 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDIGSGQ----IRQVTDGRSNNTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 302 NLAFTSDQAGRPQV-----YKVNVNGGAPQRITW---EGSQNQDAD------VSSDGKFM 347
Query: 557 LFTAN 561
+ ++
Sbjct: 348 VMVSS 352
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKLAYVTFESGRSALVIQTLSNGA----VRQVASFPRHNGAPAFSPDGSKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ GSG + R+ + + + W +
Sbjct: 262 ALSKTG-----SLNLYVMD--------------IGSGQI-RQVTDGRSNNTEPTWFPDSQ 301
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
NL A ++ P +Y V ++G +R+TW G +N
Sbjct: 302 NL-AFTSDQAGRPQ-------VYKVNVNGGAPQRITWEGSQN 335
>gi|421843380|ref|ZP_16276540.1| translocation protein TolB [Citrobacter freundii ATCC 8090 = MTCC
1658]
gi|411775101|gb|EKS58547.1| translocation protein TolB [Citrobacter freundii ATCC 8090 = MTCC
1658]
Length = 430
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDIGSGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNVNGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTAN 561
+ ++
Sbjct: 347 VMVSS 351
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLSNGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ GSG + R+ + + + W +
Sbjct: 261 ALSKTG-----SLNLYVMD--------------IGSGQI-RQVTDGRSNNTEPTWFPDSQ 300
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
NL A ++ P +Y V ++G +R+TW G +N
Sbjct: 301 NL-AFTSDQAGRPQ-------VYKVNVNGGAPQRITWEGSQN 334
>gi|114765731|ref|ZP_01444829.1| translocation protein TolB precursor [Pelagibaca bermudensis
HTCC2601]
gi|114541948|gb|EAU44983.1| translocation protein TolB precursor [Roseovarius sp. HTCC2601]
Length = 446
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG +VF S RSG + L+V+ A GE +++ G P WSP+GDLIAF
Sbjct: 307 PSFSPDGSRIVFESDRSGSQQLYVMPASGGEPT----RISFGQGRYGTPVWSPRGDLIAF 362
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
+ N F + V++ DGS R +
Sbjct: 363 TKQ-----NQGRFHIGVMRTDGSEERLL 385
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 71/173 (41%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG +V+ + ++++ D +G QLT P I+T PS+SP G I F
Sbjct: 263 PRFSPDGSKVVYSVTSGSNTDIYMRDLASGSTT----QLTFTPAIETAPSFSPDGSRIVF 318
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LYV+ G RI G G R +S G+ + FT
Sbjct: 319 ESDRSGSQQ-----LYVMPASGGEPTRISF----GQG-----RYGTPVWSPRGDLIAFT- 363
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
Q Q + V++ DGS R LT + + G P W P ++
Sbjct: 364 -------------KQNQGRFHIGVMRTDGSEERLLTASHLDEG-PTWAPNGRV 402
>gi|417097001|ref|ZP_11959020.1| translocation protein TolB [Rhizobium etli CNPAF512]
gi|327193466|gb|EGE60362.1| translocation protein TolB [Rhizobium etli CNPAF512]
Length = 443
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + IDT PS+SP G ++F
Sbjct: 260 PRFSPDGQKVIMSLQQEGNSNIYTMDLRSRTTTRLTSTAA----IDTSPSYSPDGARVSF 315
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGSG RI +GS + +S G+ + FT
Sbjct: 316 ESDRGGKPQI-----YVMNADGSGQTRISFG--DGS-------YSTPVWSPRGDLIAFTK 361
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT G+ N P W P ++
Sbjct: 362 QAGGKFS--------------IGVMKPDGSGERILT-TGFHNEGPTWAPNGRV 399
>gi|319899382|ref|YP_004159479.1| TolB protein [Bartonella clarridgeiae 73]
gi|319403350|emb|CBI76909.1| TolB protein [Bartonella clarridgeiae 73]
Length = 440
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 77/174 (44%), Gaps = 34/174 (19%)
Query: 441 PSCSPDG-KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
P SPDG K ++ +G NL+ +D + +LT IDT S+SP G+ I
Sbjct: 255 PRFSPDGQKVIMSLLQNNGSANLYTMDLRTRKMT----RLTTTKAIDTSASYSPDGNKIV 310
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559
FSS+R + Y + DGS L+RI + EGS + +S G+++ FT
Sbjct: 311 FSSDRDGKPQI-----YTMNVDGSDLQRI--SSNEGS-------YSTPIWSPRGDYIAFT 356
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
QFQ + V+ DG G R LT G+ N P W P ++
Sbjct: 357 --------------KQFQGQFSIGVMYPDGKGERILT-TGFHNEGPTWAPNGRV 395
>gi|342904023|ref|ZP_08725825.1| Protein tolB [Haemophilus haemolyticus M21621]
gi|342904675|ref|ZP_08726474.1| Protein tolB [Haemophilus haemolyticus M21621]
gi|341953096|gb|EGT79610.1| Protein tolB [Haemophilus haemolyticus M21621]
gi|341954032|gb|EGT80526.1| Protein tolB [Haemophilus haemolyticus M21621]
Length = 427
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 24/160 (15%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A DG ++ + + + +WSP + + Y S F+++++ + +
Sbjct: 184 VRVADYDGYNQFIVNRSSQPIMSPAWSPDGQRLAYVS----FENKKSQLVV--------- 230
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+++ + + G+N P+ SPDG L F S + G N++V+ + G
Sbjct: 231 ------QDLNSGARKVVASFPGHNGAPAFSPDGSRLAFASSQDGSLNIYVMSS----HGG 280
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFS 514
QLT G +T PSWSP G I F+S+R V S
Sbjct: 281 APTQLTRGAGNNTEPSWSPDGSSILFTSDRSGSPQVYRMS 320
>gi|226228060|ref|YP_002762166.1| hypothetical protein GAU_2654 [Gemmatimonas aurantiaca T-27]
gi|226091251|dbj|BAH39696.1| hypothetical protein GAU_2654 [Gemmatimonas aurantiaca T-27]
Length = 338
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 114/287 (39%), Gaps = 56/287 (19%)
Query: 330 LNGSFPSFSPDGGLIVF--------NHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWS 381
+ G PS S DG +V+ ++DF+ + + + R + D + S S
Sbjct: 96 IAGGSPSVSADGQRVVYVGESNSTVDYDFQ---DLWVVMRGAAPRRLALSDGSEHAPSMS 152
Query: 382 PTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFP 441
P + Y + S + +A D R E P + + + A P
Sbjct: 153 PNGALIAYARPNAMMLSH---IYVA---------DIEGRAESPLSLAMAPGLQY-TFATP 199
Query: 442 SCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFS 501
+ SPDG L+F G G +L+ + V+G ++Q+T+ + D +WSP G IAF
Sbjct: 200 AWSPDGTRLLFAGGAPGMLHLYTMR-VDGT---QVQQITNATYSDFDGTWSPDGQTIAF- 254
Query: 502 SNRHNPDNVEAFSLYVIKPDGSGLR-RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ I P+ L R V G E + + R H +S DG + F +
Sbjct: 255 -------------VRYISPNHQILMTRNLVTGAERTFEY-ANRSRHPAWSPDGTRIAFVS 300
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
N M++ +LY VK DGS L RLT + P+W
Sbjct: 301 N----MSDNADL--------ELYTVKPDGSALTRLTNDNLTQQHPSW 335
>gi|157146634|ref|YP_001453953.1| translocation protein TolB [Citrobacter koseri ATCC BAA-895]
gi|157083839|gb|ABV13517.1| hypothetical protein CKO_02400 [Citrobacter koseri ATCC BAA-895]
Length = 431
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 246 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDIGSGQ----IRQVTDGRSNNTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 302 NLAFTSDQAGRPQV-----YKVNVNGGAPQRITW---EGSQNQDAD------VSSDGKFM 347
Query: 557 LFTAN 561
+ ++
Sbjct: 348 VMVSS 352
Score = 42.4 bits (98), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ GSG + R+ + + + W +
Sbjct: 262 ALSKTG-----SLNLYVMD--------------IGSGQI-RQVTDGRSNNTEPTWFPDSQ 301
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
NL A ++ P +Y V ++G +R+TW G +N
Sbjct: 302 NL-AFTSDQAGRPQ-------VYKVNVNGGAPQRITWEGSQN 335
>gi|383934638|ref|ZP_09988078.1| hypothetical protein RNAN_1140 [Rheinheimera nanhaiensis E407-8]
gi|383704173|dbj|GAB58169.1| hypothetical protein RNAN_1140 [Rheinheimera nanhaiensis E407-8]
Length = 360
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 29/160 (18%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497
N P+ S DG L F S R G ++++ A + +R+LT P T P+WSP G
Sbjct: 59 NTQPAWSADGSELAFSSVRDGQSAIYLMQADGSQ----LRRLTPSPLWQTAPAWSPDGTA 114
Query: 498 IAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSADGEWL 556
IA+ + ++ VE L++++ +G ++ VA G E D +SADG+ L
Sbjct: 115 IAYLARDNSKTGVE---LHLVQL-ATGETKVLVADGLEKGPDAP-------VWSADGKQL 163
Query: 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596
+F LGA D+++V+ DGSGL+ ++
Sbjct: 164 VF---LGA----------NADGKADVWLVQRDGSGLKNIS 190
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 114/281 (40%), Gaps = 40/281 (14%)
Query: 286 NPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIV 345
P SA+ + + R +GQS I ++ S ++ L L + P++SPDG I
Sbjct: 61 QPAWSADGSELAFSSVR----DGQSAIYLMQADGSQLRRLTPSPLWQTAPAWSPDGTAIA 116
Query: 346 FNHDFELNAGIK---IAKSDGSKRWTLIKD---RTAFYNSWSPTEKHVIYTSTGPIFQSE 399
+ G++ + + G + L+ D + WS K +++ +++
Sbjct: 117 YLARDNSKTGVELHLVQLATGETK-VLVADGLEKGPDAPVWSADGKQLVFLGANADGKAD 175
Query: 400 RATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGH 459
VQ D S N E + N A P+ SPDG+++ + + GH
Sbjct: 176 VWLVQ-------RDGSGLKNISE---------QTSKRNKAHPAISPDGRYVAYVADMRGH 219
Query: 460 KNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIK 519
LF D GE + D P P WS G + F+S+R +P + ++V+
Sbjct: 220 LALFRTDLQTGE---SVNLTADKPAAYETPRWSADGRQLLFASSRDDP-GLTRMDIFVMN 275
Query: 520 PDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
DGS + + E + +SADG+ +LFT+
Sbjct: 276 ADGSAVTNLSQHPHED---------YNPHWSADGKQVLFTS 307
>gi|283784493|ref|YP_003364358.1| colicin import protein [Citrobacter rodentium ICC168]
gi|282947947|emb|CBG87511.1| colicin import protein [Citrobacter rodentium ICC168]
Length = 430
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDIGSGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNVNGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTAN 561
+ ++
Sbjct: 347 VMVSS 351
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLSNGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ GSG + R+ + + + W +
Sbjct: 261 ALSKTG-----SLNLYVMD--------------IGSGQI-RQVTDGRSNNTEPTWFPDSQ 300
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
NL A ++ P +Y V ++G +R+TW G +N
Sbjct: 301 NL-AFTSDQAGRPQ-------VYKVNVNGGAPQRITWEGSQN 334
>gi|336177363|ref|YP_004582738.1| serine/threonine protein kinase [Frankia symbiont of Datisca
glomerata]
gi|334858343|gb|AEH08817.1| serine/threonine protein kinase [Frankia symbiont of Datisca
glomerata]
Length = 740
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 76/178 (42%), Gaps = 19/178 (10%)
Query: 355 GIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
G+ +A DGS L A SWSPT +++ F A + DP
Sbjct: 563 GLYVAAVDGSSVRRLNVPAGATDPSWSPTGDRIVF------FVGSGGVDGGALFTIDADP 616
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSG---RSGHKNLFVLDAVNGE 471
+ + P LT G +A P+ SPDGK + FR ++FV+DA G
Sbjct: 617 AAAGAK---PVQ---LTPGTEGFDADPTWSPDGKKVAFRRAFDPNLAETDVFVMDASPGA 670
Query: 472 FNGDIRQLTDGPWIDTMPSW-SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
+LT+ P D P++ + G LIAF+S R P N E + PD + R++
Sbjct: 671 TP---LRLTEAPGRDQDPTFVAGDGKLIAFTSQRDGPTNREIYVTSATAPDDANARKL 725
>gi|393762319|ref|ZP_10350946.1| translocation protein TolB [Alishewanella agri BL06]
gi|392606554|gb|EIW89438.1| translocation protein TolB [Alishewanella agri BL06]
Length = 449
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/338 (21%), Positives = 122/338 (36%), Gaps = 51/338 (15%)
Query: 294 EFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN 353
+ +G +F ++ E A + ++ +L G +F ++ + E
Sbjct: 139 QLVGSSQFILDARETTINGGQFRQYAHRISDIVYEKLTGERGAFLTKIAYVLVRPNAEFP 198
Query: 354 AGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412
+ +A DG L++ + + WSP + Y + F+ +A + I
Sbjct: 199 YQLVVADYDGYNEQVLLRSKEPLMSPDWSPDGTKLAYVT----FEKRQAQIYI------- 247
Query: 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
++I + + G N+ P SPDG+ + + G+ ++V+D
Sbjct: 248 --------QDIYTGRRTILTAFPGINSSPRWSPDGRKMAMVLSKDGNAEIYVMDIATKAL 299
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR-HNPDNVEAFSLYVIKPDGSGLRRIHVA 531
++T IDT PSWSP G I FSS R NP LY + RR+
Sbjct: 300 T----RITSHRAIDTEPSWSPDGQEIVFSSERGGNPQ------LYTVNIATGDTRRLTFE 349
Query: 532 G---------PEGSGDVDRERIN---HVCFSADGEWLLFTANLGAVMAEPVSWPN-QFQP 578
G P+G V R N H+ L + P PN
Sbjct: 350 GEMNLAGTFSPDGQSVVMVNRTNGRYHLARLDRQSRYLQVLTATNLDESPSVAPNGSMII 409
Query: 579 YGDLY-------VVKLDGSGLRRLTWNGYENGTPAWHP 609
Y ++ +V +DG RL + + +PAW P
Sbjct: 410 YSTMHGRSQVLALVSMDGRFKARLPASDGQVKSPAWSP 447
>gi|292490341|ref|YP_003525780.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Nitrosococcus halophilus Nc4]
gi|291578936|gb|ADE13393.1| Tol-Pal system beta propeller repeat protein TolB [Nitrosococcus
halophilus Nc4]
Length = 430
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 105/279 (37%), Gaps = 57/279 (20%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A DG T+++ + + WSP + Y S F+ +R+ V +
Sbjct: 184 LQVADVDGHNPHTILQSKEPIMSPVWSPDGTKLAYVS----FERKRSEVIV--------- 230
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+E+ + G N+ P SPDG+ L + G+ +++LD
Sbjct: 231 ------QELRTGRRQSVASFPGINSAPDWSPDGRKLALVLSKEGNPEIYILDLATRRLT- 283
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-- 532
+LT IDT P+W+P G I F+S+R LY I G +R+ G
Sbjct: 284 ---RLTRNASIDTEPTWAPDGRSIVFTSDRGGRPQ-----LYQISASGGQAQRLTFDGTY 335
Query: 533 -------PEGS------GDVDRERINHVCFSADGEWLLFTANL---------GAVMAEPV 570
P+G GD + I + ++ +L + G ++
Sbjct: 336 NASASFAPDGQRLALVHGDKGQFHIAVLDLASKDLQVLTETRMDESPSFAPNGRMILYAT 395
Query: 571 SWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
S P G L V DG +RL G E PAW P
Sbjct: 396 SGPQG----GALAAVSTDGRVRQRLAQKGDEVREPAWSP 430
>gi|440703450|ref|ZP_20884388.1| Tat pathway signal sequence domain protein [Streptomyces
turgidiscabies Car8]
gi|440275160|gb|ELP63620.1| Tat pathway signal sequence domain protein [Streptomyces
turgidiscabies Car8]
Length = 1074
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG LV + R G +L+ L + G +RQLTDGPW D P+WSP G IAF
Sbjct: 106 PQFSPDGSRLVVCAYRGGGFHLWTL---RPDGTG-LRQLTDGPWDDRGPAWSPDGTRIAF 161
Query: 501 SSNRHNPDNVEA--FSLYVIKPDGSGLRRIH-VAGPEGSGDVDRERINHVCFSADGEWLL 557
+S R D V + ++V+ L R+ G +G G +S DGE +L
Sbjct: 162 ASERGG-DTVTGAPYRVWVVDVRTGALTRLTGRPGQQGPGQDAAWEDFDPTWSPDGERVL 220
Query: 558 F 558
F
Sbjct: 221 F 221
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 118/326 (36%), Gaps = 88/326 (26%)
Query: 319 ASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFY- 377
A PV+ L + P+ SPDG + F LNA G +++ T Y
Sbjct: 360 ARPVRALHL-------PALSPDGRTVAFA---ALNALWTAGTRGGRPPRRVLQVPTTRYV 409
Query: 378 --NSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEET 435
+W+P TG ++ +R + R R ++ D T
Sbjct: 410 LAPTWTPD-------GTGLVYADDRDGLFTVR------------RRDL--DSGAETVLAG 448
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP-----------W 484
G FP+ SPDG L ++ N +R L DGP
Sbjct: 449 GGRVFPALSPDGTRLA---------------CLDMSGNLVVRDLPDGPERVLAAALGAGG 493
Query: 485 IDTMPSWSPKGDLIAFSS-NRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRER 543
+ PSWSP G +A NR N E ++L I +G +H P S DR
Sbjct: 494 LPGRPSWSPDGRYVALCDRNRVNQRFREGYNLIRIVDTTTGTAALHAVAPHTS-IADRYD 552
Query: 544 INHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS---GLRRLTWNGY 600
V +S DG W+ AV+AE W L V+ DG+ RRLT
Sbjct: 553 SGPV-WSPDGRWM-------AVVAESALW---------LLPVRADGTPHGRPRRLTTEPA 595
Query: 601 ENGTPAWHPGNQ----LDLGKLRLED 622
++ P+W + L G LRL D
Sbjct: 596 DH--PSWSADARTLLYLSAGTLRLID 619
>gi|291085672|ref|ZP_06353704.2| Tol-Pal system beta propeller repeat protein TolB [Citrobacter
youngae ATCC 29220]
gi|291070094|gb|EFE08203.1| Tol-Pal system beta propeller repeat protein TolB [Citrobacter
youngae ATCC 29220]
Length = 431
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 246 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDIGSGQ----IRQVTDGRSNNTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 302 NLAFTSDQAGRPQV-----YKVNVNGGAPQRITW---EGSQNQDAD------VSSDGKFM 347
Query: 557 LFTAN 561
+ ++
Sbjct: 348 VMVSS 352
Score = 42.4 bits (98), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ GSG + R+ + + + W +
Sbjct: 262 ALSKTG-----SLNLYVMD--------------IGSGQI-RQVTDGRSNNTEPTWFPDSQ 301
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
NL A ++ P +Y V ++G +R+TW G +N
Sbjct: 302 NL-AFTSDQAGRPQ-------VYKVNVNGGAPQRITWEGSQN 335
>gi|17545454|ref|NP_518856.1| translocation protein TolB [Ralstonia solanacearum GMI1000]
gi|32699708|sp|Q8Y1F5.1|TOLB_RALSO RecName: Full=Protein TolB; Flags: Precursor
gi|17427746|emb|CAD14265.1| probable protein tolb precursor [Ralstonia solanacearum GMI1000]
Length = 432
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 24/150 (16%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG+ + L + +WSP V Y S F+S + V +
Sbjct: 180 LQISDSDGANPQVALTSNEPIISPAWSPDGTKVAYVS----FESRKPVVYV--------- 226
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++ + + + GNN+ P+ SPDG+ + R G+ ++ VN + +G
Sbjct: 227 ------HDLISGRRAVISNQKGNNSAPAWSPDGRRVAVALSRDGNTQIY---QVNADGSG 277
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
+R+LT IDT PS+SP G I F+S+R
Sbjct: 278 -LRRLTRSSAIDTEPSFSPDGRSIYFTSDR 306
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 71/173 (41%), Gaps = 22/173 (12%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIY 389
N S P++SPDG + + N I +DGS L + S+SP + + +
Sbjct: 243 NNSAPAWSPDGRRVAVALSRDGNTQIYQVNADGSGLRRLTRSSAIDTEPSFSPDGRSIYF 302
Query: 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF 449
TS QI R+ + + + R + G N P SPDGK
Sbjct: 303 TS------DRGGAPQIYRMPTEGEDAGSAQRVTF----------KGGYNTSPRVSPDGKL 346
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
L + S G L+V D NG+ G LTD + D PS++ G I +++
Sbjct: 347 LAYISRVGGAFKLYVQDLSNGDVTG----LTDTSY-DESPSFAANGKFILYAT 394
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 29/173 (16%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG + + S S ++V D ++G +++ ++ P+WSP G +A
Sbjct: 203 PAWSPDGTKVAYVSFESRKPVVYVHDLISGRRA----VISNQKGNNSAPAWSPDGRRVAV 258
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ +R + Y + DGSGLRR+ S +D E FS DG + FT+
Sbjct: 259 ALSRDGNTQI-----YQVNADGSGLRRLTR-----SSAIDTE----PSFSPDGRSIYFTS 304
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+ G + P + + D +R+T+ G N +P P +L
Sbjct: 305 DRGGA-PQIYRMPTEGE----------DAGSAQRVTFKGGYNTSPRVSPDGKL 346
>gi|420324222|ref|ZP_14826007.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri CCH060]
gi|391256601|gb|EIQ15727.1| tol-Pal system beta propeller repeat protein TolB [Shigella
flexneri CCH060]
Length = 430
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+ F+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLVFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLGA 564
+ ++ G
Sbjct: 347 VMVSSNGG 354
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L+FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLVFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
>gi|408374581|ref|ZP_11172266.1| tolB protein [Alcanivorax hongdengensis A-11-3]
gi|407765539|gb|EKF73991.1| tolB protein [Alcanivorax hongdengensis A-11-3]
Length = 425
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 78/322 (24%), Positives = 122/322 (37%), Gaps = 58/322 (18%)
Query: 314 HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDR 373
L VA + + +L G +FS + FN + ++ A +DG + T+++ +
Sbjct: 134 QLRDVAHAISDRIYEQLTGIPGAFSTKILYVTFNRKVDTPYQLQYADADGHRVTTILRSK 193
Query: 374 TAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK 432
+ +WSP + + Y VSF+ D+ R I T+
Sbjct: 194 EPIMSPTWSPDGRKIAY------------------VSFE-----DHGRPAIYIQNLATTE 230
Query: 433 EET-----GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT 487
G N P SPDG+ L R G+ +++LD +N + + +LT IDT
Sbjct: 231 RHKVSSFDGINGAPDWSPDGQKLALTLSRDGNPEIYMLD-LNSKA---LTRLTHNYAIDT 286
Query: 488 MPSWSPKGDLIAFSSNRH----------NPDNVEAFSL-------YVIKPDGSGLRRIHV 530
P W P G+ + F+S+R N +V S + PDG L +H
Sbjct: 287 EPRWLPDGEHLIFTSSRSGGPQIYKLDINDKSVRRVSFEGSYNARSDVTPDGHYLVYVHR 346
Query: 531 AGPE---GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKL 587
+ G D+ R N V + E N V+ + Q + G L V +
Sbjct: 347 RNGKFNVGVQDLQRGTFNIVTKTDMDESPSVAPNGSMVI-----YGTQDRGTGVLEAVSI 401
Query: 588 DGSGLRRLTWNGYENGTPAWHP 609
DGS L E PAW P
Sbjct: 402 DGSVKVELPSKEGEVREPAWSP 423
>gi|420245400|ref|ZP_14749038.1| tol-pal system beta propeller repeat protein TolB [Rhizobium sp.
CF080]
gi|398047537|gb|EJL40058.1| tol-pal system beta propeller repeat protein TolB [Rhizobium sp.
CF080]
Length = 434
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 75/173 (43%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + IDT PS++P G IAF
Sbjct: 251 PRFSPDGQKVIMSLQQEGNSNIYTMDLRSRTTTRLTSTAA----IDTSPSYAPDGGRIAF 306
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGSG RI +GS + +S G+ + FT
Sbjct: 307 ESDRGGRPQI-----YVMNADGSGQTRISFG--DGS-------YSTPVWSPRGDLIAFTK 352
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT +G+ N P W P ++
Sbjct: 353 QSGGKFS--------------IGVMKPDGSGERILT-SGFHNEGPTWAPNGRV 390
>gi|374312156|ref|YP_005058586.1| transcriptional regulator domain-containing protein [Granulicella
mallensis MP5ACTX8]
gi|358754166|gb|AEU37556.1| transcriptional regulator domain-containing protein [Granulicella
mallensis MP5ACTX8]
Length = 752
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 111/298 (37%), Gaps = 42/298 (14%)
Query: 196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPI--APTRVTPPGVHCFTPAAFH- 252
P S D F Q D W + R P + E P P RV P +H +
Sbjct: 354 PALSVDVNAVFSPQGD--WIAFVRARGPSSAEIHVMPAHGGPDRVLPFNIHSINGLTWSA 411
Query: 253 DGKRLAVATRRKNRNFRHIEIYDLTLNPN---------FHHYNPFVSANSEFIGY-HRFR 302
DG+ L VA+ +R ++ L+LN + H +P VS + Y R
Sbjct: 412 DGQSLLVAS---SRALSVGNLWKLSLNGDPPVALSTLPAHTEDPVVSPKGHRLAYIDLLR 468
Query: 303 GESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD 362
S ST H ++L R S P +SPDG I F D + I + K+D
Sbjct: 469 NGSLWRMSTDGH-----GKQEQLIASRFIDSAPDYSPDGSEIAFESDRTGASEIWVCKND 523
Query: 363 GS--KRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR 420
G+ KR T I WSP K + + S F A + N
Sbjct: 524 GTQCKRLTNIFGPNTSSPRWSPDGKLLAFNSG---FHGRSAIFVV------------NAS 568
Query: 421 EEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ 478
IP V E +N P+ S DG+ L F S R+G ++ VNG+ I Q
Sbjct: 569 GGIPLLVTT-GAFEAADNLIPNWSRDGQSLYFSSNRTGRFEVWKTK-VNGDEERQITQ 624
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 102/240 (42%), Gaps = 43/240 (17%)
Query: 333 SFPSFSPDGGLIVFN--HDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIY- 389
S+P+FSP+G + ++ D + I + K D R L +F +WSP + + Y
Sbjct: 214 SWPTFSPNGNSLAYSWHSDAGQDQAIYMQKVDSDDREKLSDGGKSFSPAWSPRGEEIAYL 273
Query: 390 --TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
T + E A VQ + L + NN + DV L + SPDG
Sbjct: 274 RATEDPKWLEIEVAKVQRPHTARHL--AFINNLKSAFHDVPTL-----------NWSPDG 320
Query: 448 KFLVFR----SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW--IDTMPSWSPKGDLIAFS 501
+LV + S H L L+ NG+ + LT P +D +SP+GD IAF
Sbjct: 321 SWLVTTEKEDADESSHLELVSLE------NGEKQALTHPPALSVDVNAVFSPQGDWIAFV 374
Query: 502 SNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN 561
R P + E ++V+ G GP+ + IN + +SADG+ LL ++
Sbjct: 375 RAR-GPSSAE---IHVMPAHG---------GPDRVLPFNIHSINGLTWSADGQSLLVASS 421
>gi|86359053|ref|YP_470945.1| translocation protein TolB [Rhizobium etli CFN 42]
gi|119371054|sp|Q2K4L8.1|TOLB_RHIEC RecName: Full=Protein TolB; Flags: Precursor
gi|86283155|gb|ABC92218.1| protein transporter protein [Rhizobium etli CFN 42]
Length = 436
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + IDT PS+SP G ++F
Sbjct: 253 PRFSPDGQKVIMSLQQEGNSNIYTMDLRSRTTTRLTSTAA----IDTSPSYSPDGARVSF 308
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGSG RI +GS + +S G+ + FT
Sbjct: 309 ESDRGGKPQI-----YVMNADGSGQTRISFG--DGS-------YSTPVWSPRGDLIAFTK 354
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT +G+ N P W P ++
Sbjct: 355 QSGGKFS--------------IGVMKPDGSGERILT-SGFHNEGPTWAPNGRV 392
>gi|397667195|ref|YP_006508732.1| hypothetical protein LPV_1707 [Legionella pneumophila subsp.
pneumophila]
gi|395130606|emb|CCD08851.1| periplasmic protein [Legionella pneumophila subsp. pneumophila]
Length = 419
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 107/275 (38%), Gaps = 49/275 (17%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A +DG +L+ + SWSP K + Y S F+ ++A + F +
Sbjct: 170 LEVADADGHNPQSLLVSSEPIMSPSWSPNGKSISYVS----FEKKKAEI------FTVSV 219
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
R L G N P+ SPDG+ L +SG ++ +D +G
Sbjct: 220 ETGQRR---------LITSFPGINGAPAWSPDGRHLAVVLSKSGTPKIYDVDLSSGS--- 267
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
+RQLT G IDT P +SP G + F+S R V SL DG + R+ G
Sbjct: 268 -MRQLTFGNSIDTEPRYSPDGRSLLFTSGRGGSPQVYRLSL----ADGQ-ISRVTFEGNY 321
Query: 535 GSGDVDRERINHVCF--SADGEWLLFTANLG----------AVMAEPVSWPN-------- 574
+ + H+ D ++ + N G + P PN
Sbjct: 322 NARASYTPDMKHIVMLHREDRQFNIGVQNTGGGPISNLTFSGLDESPSVSPNSRLVLYAT 381
Query: 575 QFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
++Q G L +V +DG RL + PAW P
Sbjct: 382 RYQDRGVLGIVSIDGRIRMRLPAREGDVQEPAWSP 416
>gi|374991258|ref|YP_004966753.1| hypothetical protein SBI_08504 [Streptomyces bingchenggensis BCW-1]
gi|297161910|gb|ADI11622.1| hypothetical protein SBI_08504 [Streptomyces bingchenggensis BCW-1]
Length = 1078
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDGK L + R G +L+ L D+RQ TDGPW D P+WSP G IAF
Sbjct: 114 PVFSPDGKLLAICAYRGGGFHLWTLR----PDGSDVRQRTDGPWDDRGPAWSPDGTRIAF 169
Query: 501 SSNR 504
+S R
Sbjct: 170 ASER 173
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 23/128 (17%)
Query: 409 SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHK------NL 462
+ + D SD R + P D + P+ SPDG + F S R G +
Sbjct: 137 TLRPDGSDVRQRTDGPWD-----------DRGPAWSPDGTRIAFASERGGDTVAGSPYRV 185
Query: 463 FVLDAVNGEFN------GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY 516
+VL+ GE G L DG W D P+WSP G+ + F R ++A ++
Sbjct: 186 WVLEVATGELTRLTGVPGQDGPLQDGVWEDFDPAWSPDGERVLFVRGRLTGAALDARTVA 245
Query: 517 VIKPDGSG 524
++ DGSG
Sbjct: 246 SVRADGSG 253
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 65/146 (44%), Gaps = 22/146 (15%)
Query: 489 PSWSPKGDLIAFSS-NRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV 547
PSWSP G IA+ NR N E ++L I GSG R++ P S DR V
Sbjct: 506 PSWSPDGRFIAYCDRNRLNQRFREGYNLIRIVDAGSGAARLYALAPHTSLS-DRYDSGPV 564
Query: 548 CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
+S DG L AV+AE W +P G DG RRLT + ++ P+W
Sbjct: 565 -WSPDGRHL-------AVIAESALWLLPVRPDG-----TPDGE-PRRLTEDSADH--PSW 608
Query: 608 HPGNQ----LDLGKLRLEDDIGDKLR 629
++ L GKLRL D G R
Sbjct: 609 SGDSRSILYLSAGKLRLLDVEGGTAR 634
>gi|422022121|ref|ZP_16368630.1| translocation protein TolB [Providencia sneebia DSM 19967]
gi|414097871|gb|EKT59524.1| translocation protein TolB [Providencia sneebia DSM 19967]
Length = 430
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T PSW P
Sbjct: 245 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPSWMPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+ ++S D +Y I +G R+ G + S D D S DG ++
Sbjct: 301 TLVYTS-----DQAGRPQIYKININGGSPERVTWEGSQ-SQDAD--------VSPDGSFI 346
Query: 557 LFTANLGA 564
+ ++ G
Sbjct: 347 VMVSSGGG 354
>gi|383483749|ref|YP_005392662.1| translocation protein TolB [Rickettsia parkeri str. Portsmouth]
gi|378936103|gb|AFC74603.1| translocation protein TolB [Rickettsia parkeri str. Portsmouth]
Length = 444
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 127/301 (42%), Gaps = 37/301 (12%)
Query: 298 YHRFRGESTEGQSTIPHLEPVAS--PVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG 355
Y + G++ + I ++ +S +K + ++ +G+ + +G +V F +A
Sbjct: 152 YEKITGDAGYFDTKIVYVSESSSLPKIKRIALMDYDGANNKYLTNGKSLVLTPRFARSAD 211
Query: 356 IKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS 415
+ S +KR L+ Y T K + I + R + + + +
Sbjct: 212 KILYVSYATKRRVLV------YEKDLKTGKESVVGDFPGISFAPRFSPDGRKAVMSIAKN 265
Query: 416 DDNNREEIPCDVKILTK--EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
+ EI K L K + G N PS SPDGK +V+ S R+G L+++++ +G
Sbjct: 266 GSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGKKIVYNSDRNGVPQLYIMNS-DGS-- 322
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP---DGSGLRRIHV 530
D+++++ G PSWSP+GD IAF+ D + F++ ++K D RI
Sbjct: 323 -DVQRISFGGGSYAAPSWSPRGDYIAFTKITKG-DGGKTFNIGIMKACPQDDENSERIIT 380
Query: 531 AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590
+G + C+S +G ++F WP+ + G + +D +
Sbjct: 381 SG---------YLVESPCWSPNGRVIMFAKG----------WPSSAKAPGKNKIFAIDLT 421
Query: 591 G 591
G
Sbjct: 422 G 422
>gi|163845276|ref|YP_001622931.1| translocation protein TolB [Brucella suis ATCC 23445]
gi|189035980|sp|A9WWH3.1|TOLB_BRUSI RecName: Full=Protein TolB; Flags: Precursor
gi|163675999|gb|ABY40109.1| Tol-Pal system beta propeller repeat protein TolB [Brucella suis
ATCC 23445]
Length = 443
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 77/179 (43%), Gaps = 34/179 (18%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
G P SPDG+ +V + G N++ +D N +LT IDT S+SP
Sbjct: 254 GMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTT----RLTSSQAIDTGASYSPD 309
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
G I F+S+R LYV+ DGS RRI + +GS + +S G+
Sbjct: 310 GSQIVFTSDRGGRPQ-----LYVMGADGSNPRRISMG--DGS-------YSTPVWSPRGD 355
Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+ FT Q Q + V K DGSG R LT +G+ N P W P ++
Sbjct: 356 LIAFT--------------KQSQGQFSIGVTKTDGSGERLLT-SGFHNEGPTWAPNGRV 399
>gi|407701563|ref|YP_006826350.1| amidohydrolase [Alteromonas macleodii str. 'Black Sea 11']
gi|407250710|gb|AFT79895.1| amidohydrolase [Alteromonas macleodii str. 'Black Sea 11']
Length = 1111
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 10/126 (7%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMPSWSPKGD 496
N PS SPDGK + F S + G N++V+D ++G ++RQ+T + + P WSP G+
Sbjct: 103 NIHPSISPDGKQIAFISDKDGLSNVWVMD-IDGS---NLRQVTKEKNNLIHSPKWSPDGE 158
Query: 497 LIAFSSNRHNPDNVEAFSLYVI-KPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW 555
+ + + ++ A +++ K G GL+ SG D++ I FS DG++
Sbjct: 159 YLVVTKGIMSSRSIPAGEIWMYHKSGGDGLQ----IKARNSGKRDQQNIADPVFSHDGKY 214
Query: 556 LLFTAN 561
+ FT N
Sbjct: 215 IYFTEN 220
>gi|53804448|ref|YP_113693.1| translocation protein TolB [Methylococcus capsulatus str. Bath]
gi|67461931|sp|Q609K4.1|TOLB_METCA RecName: Full=Protein TolB; Flags: Precursor
gi|53758209|gb|AAU92500.1| tolB protein [Methylococcus capsulatus str. Bath]
Length = 424
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 108/281 (38%), Gaps = 64/281 (22%)
Query: 356 IKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A +DG + + ++ + +WSP + Y S F+S R+ + + ++
Sbjct: 181 LQVADTDGYNPQSVIVSNEPIMSPAWSPDGTKIAYVS----FESRRSAIYVQTLA----- 231
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
R ++ + G N P+ SPDG L + G+ +++V++ +G
Sbjct: 232 --TGERRKV--------SDAPGINGAPAFSPDGSRLALTLSKDGNPDIYVMNL----GSG 277
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
+ ++TD IDT P+WS G I F+S+R LY++ G R+ G
Sbjct: 278 GLTRITDYSGIDTEPNWSRDGRSIVFTSDRGGKPQ-----LYLVSASGGPAERLTYEGDY 332
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLG-----AVM-----------AEPVSWPNQFQP 578
+ V FS DG L G AVM + P+ F P
Sbjct: 333 NARGV---------FSPDGRSLAMVHGKGGDYRIAVMDLASRAVRVLTSGPLDESPGFAP 383
Query: 579 ----------YGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G L V +DG + L G PAW P
Sbjct: 384 NGSMILYAARRGQLAAVSIDGKVRQSLRIEGGAVREPAWSP 424
>gi|257465021|ref|ZP_05629392.1| translocation protein TolB [Actinobacillus minor 202]
gi|257450681|gb|EEV24724.1| translocation protein TolB [Actinobacillus minor 202]
Length = 425
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 24/156 (15%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++++ DG +T++K + + WSP + Y + F++++ V +
Sbjct: 180 LRVSDYDGFNAFTVVKSKEPLMSPEWSPEGSKLAYVT----FENKKPQVVV--------- 226
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++ + + G+N P+ SPDG + F S + G N++V+DA NG G
Sbjct: 227 ------HDLRSGARRVVAALKGHNGAPAFSPDGSKIAFASNQDGELNIYVVDA-NG---G 276
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV 510
+LT +T PSWSP G I F+S+R V
Sbjct: 277 TPSKLTANAGNNTEPSWSPDGGSIYFTSDRSGSPQV 312
>gi|1335976|gb|AAB01192.1| apical gut membrane polyprotein [Haemonchus contortus]
Length = 822
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 45/201 (22%)
Query: 435 TGNNAFPS---CSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR-QLTDGPWIDTMPS 490
T N+ + S SPDGK +V+ S +SG +L++ D NG ++ QLT D S
Sbjct: 171 TKNDVYDSEAFISPDGKKIVYTSKQSGDLDLWITD-----INGALKIQLTKAKGYDGGAS 225
Query: 491 WSPKGDLIAFSSNR-----------HNPDN----VEAFSLYVIKPDGSGLRRIHVAGPEG 535
+SP G+ I F ++R H +N + LYV+ DG R + P G
Sbjct: 226 FSPDGEKIVFHASRPTTKDKIDIYDHLLENDLVAMSEMELYVMNADGIDKRSV-FKQPRG 284
Query: 536 SGDVDRERINHV-CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR 594
+N + D + ++F++N + P++F LY+V DG+GL R
Sbjct: 285 G-------LNWTPYYHPDNKRIIFSSNTNSTK------PSEFH----LYIVNEDGTGLER 327
Query: 595 LTW-NGYENGTPAW-HPGNQL 613
+T+ +GY N P + H G ++
Sbjct: 328 VTFGSGYFNAFPVFSHDGKKV 348
Score = 46.2 bits (108), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 24/145 (16%)
Query: 476 IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPE 534
++QLTD P + SP G IAF+S R L+ + DG+ L ++ G +
Sbjct: 565 VKQLTDEPGYNAEAVLSPDGKTIAFTSIRTGD-----LELWTMNTDGTNLHQVTKEYGYD 619
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG-------DLYVVKL 587
G FS DG+ L+F A+ E + + YG ++YVV +
Sbjct: 620 GG----------CFFSPDGKRLVFRASRPKTQKEKEKY-QKLLDYGLVEPTLTEIYVVDV 668
Query: 588 DGSGLRRLTWNGYENGTPAWHPGNQ 612
DG L+++T G + P + P N+
Sbjct: 669 DGKNLKQVTNFGVASWAPYYLPDNK 693
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 40/211 (18%)
Query: 427 VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID 486
VK LT +E G NA SPDGK + F S R+G L+ ++ +G ++ Q+T D
Sbjct: 565 VKQLT-DEPGYNAEAVLSPDGKTIAFTSIRTGDLELWTMN-TDGT---NLHQVTKEYGYD 619
Query: 487 TMPSWSPKGDLIAFSSNR-HNPDNVEAFS--------------LYVIKPDGSGLRRIHVA 531
+SP G + F ++R E + +YV+ DG L+++
Sbjct: 620 GGCFFSPDGKRLVFRASRPKTQKEKEKYQKLLDYGLVEPTLTEIYVVDVDGKNLKQVTNF 679
Query: 532 GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG 591
G + D + ++F++N QF + LYV+ DG+G
Sbjct: 680 GVASWAPY---------YLPDNKRIIFSSNYNMS-------AKQFGSFA-LYVINEDGTG 722
Query: 592 LRRLTW-NGYE-NGTPAWH-PGNQLDLGKLR 619
L R+T+ GY+ N P ++ GN+L G R
Sbjct: 723 LERVTFGEGYQFNAFPMFNRAGNKLVWGSSR 753
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 31/164 (18%)
Query: 422 EIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKN-------------------- 461
+I +KI + G + S SPDG+ +VF + R K+
Sbjct: 205 DINGALKIQLTKAKGYDGGASFSPDGEKIVFHASRPTTKDKIDIYDHLLENDLVAMSEME 264
Query: 462 LFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD 521
L+V++A + +Q G ++ P + P I FSSN ++ E F LY++ D
Sbjct: 265 LYVMNADGIDKRSVFKQPRGG--LNWTPYYHPDNKRIIFSSNTNSTKPSE-FHLYIVNED 321
Query: 522 GSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV 565
G+GL R+ GSG + + FS DG+ +++++N G+
Sbjct: 322 GTGLERVTF----GSGYFNAFPV----FSHDGKKVVWSSNRGST 357
>gi|383784514|ref|YP_005469084.1| TolB protein [Leptospirillum ferrooxidans C2-3]
gi|383083427|dbj|BAM06954.1| putative TolB protein [Leptospirillum ferrooxidans C2-3]
Length = 452
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
NN PS SP G + F S R GH +FV+D+ +G ++ ++T + + P+W P GD
Sbjct: 310 NNLSPSWSPSGNQIAFVSDRDGHPQIFVMDS-DGT---NVHRITYNGFYNVSPAWGPSGD 365
Query: 497 LIAF--SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGD 538
L+AF ++RH P + + PDGS R I + G D
Sbjct: 366 LVAFVCMNDRHRP------KICLTTPDGS--RSIQITHGRGQDD 401
>gi|149202852|ref|ZP_01879823.1| translocation protein TolB precursor [Roseovarius sp. TM1035]
gi|149143398|gb|EDM31434.1| translocation protein TolB precursor [Roseovarius sp. TM1035]
Length = 441
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG +VF S RSG L+++ A GE R+++ G P WSP+GDL+AF
Sbjct: 301 PSYSPDGSQIVFESDRSGTPQLYIMSAGGGE----ARRISFGEGRYGTPVWSPRGDLVAF 356
Query: 501 SSNRHNPDNVEAFSLYVIKPDGS 523
+ F + V++ DGS
Sbjct: 357 TKQSKG-----RFHIGVMRTDGS 374
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 51/236 (21%)
Query: 380 WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNA 439
+SPT V+YTS +++ + + V+ + R E+P T++ T + A
Sbjct: 214 FSPTGDRVLYTS----YETGFPRIYVLDVA-------NVGRRELP------TQDATMSFA 256
Query: 440 FPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
P +P+G+ +V+ + G+ +L+ +D +G +LT P I+T PS+SP G I
Sbjct: 257 -PRFAPNGRTVVYSLTQGGNTDLYTMDIGSGAST----RLTTAPSIETAPSYSPDGSQIV 311
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559
F S+R LY++ G RRI EG R +S G+ + FT
Sbjct: 312 FESDRSGTPQ-----LYIMSAGGGEARRISFG--EG-------RYGTPVWSPRGDLVAFT 357
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDL 615
Q + + V++ DGS R LT + + G P W P ++ +
Sbjct: 358 --------------KQSKGRFHIGVMRTDGSEERLLTASFLDEG-PTWAPNGRVIM 398
>gi|58040119|ref|YP_192083.1| translocation protein TolB [Gluconobacter oxydans 621H]
gi|67461870|sp|Q5FQB9.1|TOLB_GLUOX RecName: Full=Protein TolB; Flags: Precursor
gi|58002533|gb|AAW61427.1| TolB protein [Gluconobacter oxydans 621H]
Length = 453
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489
+T + P SPDG +VF S R G L+++ A G ++++ G P
Sbjct: 298 ITNSNGAIDTSPCFSPDGSQIVFNSDRGGSPQLYIMSASGGA----AKRISYGSGQYGSP 353
Query: 490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526
WSP+GDLIAF+ FSL V+ PDG+G R
Sbjct: 354 VWSPRGDLIAFTRIGSG-----GFSLGVMNPDGTGER 385
Score = 42.4 bits (98), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-PWIDTM 488
+ E G + P SP G +V + R G ++FV+D + RQ+T+ IDT
Sbjct: 253 ILGEFAGISFAPRFSPTGGSVVLSATRGGGSDIFVVDLASRA----KRQITNSNGAIDTS 308
Query: 489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
P +SP G I F+S+R LY++ G +RI
Sbjct: 309 PCFSPDGSQIVFNSDRGGSPQ-----LYIMSASGGAAKRI 343
>gi|338213454|ref|YP_004657509.1| hypothetical protein [Runella slithyformis DSM 19594]
gi|336307275|gb|AEI50377.1| WD40-like beta Propeller containing protein [Runella slithyformis
DSM 19594]
Length = 350
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 65/135 (48%), Gaps = 28/135 (20%)
Query: 444 SPDGKFLVFRSGR-------SGHKNLFVLDAV--------NGEFNG-DIRQLTDGPWIDT 487
SPDGK LVFR+ R + +K L L V +G D+RQ+T +
Sbjct: 208 SPDGKKLVFRASRPKTDEEVAEYKKLLSLGLVAPTDMEIYTCNVDGSDLRQVTKLGKANW 267
Query: 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV 547
P ++PKGD I FSSN H+ + F LY I DG+G+ R+ + N
Sbjct: 268 APYFTPKGDKIIFSSNHHSQRGYD-FQLYTINLDGTGVERV----------TNNSIFNAF 316
Query: 548 -CFSADGEWLLFTAN 561
FS DG+ L+F++N
Sbjct: 317 PMFSHDGKKLIFSSN 331
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 40/203 (19%)
Query: 427 VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID 486
VK LT E+ G +A + SP G +VF S R G +L+ +D ++G+ +++++T+ D
Sbjct: 148 VKQLTAEK-GYDAEATISPKGDKIVFTSTRDGDLDLYTMD-IDGK---NVKRVTNLLGYD 202
Query: 487 TMPSWSPKGDLIAFSSNRHNPDNVEA---------------FSLYVIKPDGSGLRRIHVA 531
+SP G + F ++R D A +Y DGS LR++
Sbjct: 203 GGAFFSPDGKKLVFRASRPKTDEEVAEYKKLLSLGLVAPTDMEIYTCNVDGSDLRQVTKL 262
Query: 532 GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG 591
G F+ G+ ++F++N + FQ LY + LDG+G
Sbjct: 263 GKANWAPY---------FTPKGDKIIFSSNHHSQRGY------DFQ----LYTINLDGTG 303
Query: 592 LRRLTWNGYENGTPAW-HPGNQL 613
+ R+T N N P + H G +L
Sbjct: 304 VERVTNNSIFNAFPMFSHDGKKL 326
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 18/206 (8%)
Query: 322 VKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGS--KRWT--LIKDRTAFY 377
VK+L + + + SP G IVF + + + DG KR T L D AF+
Sbjct: 148 VKQLTAEKGYDAEATISPKGDKIVFTSTRDGDLDLYTMDIDGKNVKRVTNLLGYDGGAFF 207
Query: 378 NSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPC-----DVKILTK 432
SP K +++ ++ P E A + + P+D E C D++ +TK
Sbjct: 208 ---SPDGKKLVFRASRPKTDEEVAEYKKLLSLGLVAPTD---MEIYTCNVDGSDLRQVTK 261
Query: 433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNL-FVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491
N A P +P G ++F S + F L +N + G + ++T+ + P +
Sbjct: 262 LGKANWA-PYFTPKGDKIIFSSNHHSQRGYDFQLYTINLDGTG-VERVTNNSIFNAFPMF 319
Query: 492 SPKGDLIAFSSNRHNPDNVEAFSLYV 517
S G + FSSNR+N +LY+
Sbjct: 320 SHDGKKLIFSSNRNNAPGSRDTNLYI 345
>gi|254435418|ref|ZP_05048925.1| Tol-Pal system beta propeller repeat protein TolB [Nitrosococcus
oceani AFC27]
gi|207088529|gb|EDZ65801.1| Tol-Pal system beta propeller repeat protein TolB [Nitrosococcus
oceani AFC27]
Length = 422
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 106/276 (38%), Gaps = 51/276 (18%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A DG T+++ + + +WSP + Y S F+ R+ V +
Sbjct: 176 LQVADVDGHNPHTILRSKEPILSPAWSPDGTQLAYVS----FERRRSEVFV--------- 222
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+E+ + +G N+ P SPDG L + G+ +++ D G
Sbjct: 223 ------QELRTGQRQSVASFSGINSAPDWSPDGGKLALVLSKEGNPEIYIRDLATGRLT- 275
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-- 532
+LT IDT P+W+P G I F+S+R LY I G +R+ G
Sbjct: 276 ---RLTHNTAIDTEPAWAPDGGSIVFTSDRGGRPQ-----LYQIPVSGGRAQRLTFDGAY 327
Query: 533 -PEGSGDVDRERINHVCFSADGEWLLFTANLGA----VMAE------PVSWPN------- 574
S D R+ + G++ + NL + V+ E P PN
Sbjct: 328 NASASFAPDGRRLA-LIHGDKGQFHIAVLNLQSKELQVLTETRMDESPSFAPNGRMILYA 386
Query: 575 QFQPYGD-LYVVKLDGSGLRRLTWNGYENGTPAWHP 609
P G L V DG +RL G E PAW P
Sbjct: 387 TSSPQGGVLAAVSTDGRVRQRLAQQGDEVREPAWSP 422
>gi|84501652|ref|ZP_00999824.1| translocation protein TolB precursor [Oceanicola batsensis
HTCC2597]
gi|84390273|gb|EAQ02832.1| translocation protein TolB precursor [Oceanicola batsensis
HTCC2597]
Length = 443
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 73/173 (42%), Gaps = 39/173 (22%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG +VF S RSG + L+++ GE +++ G P WSP+GDLIAF
Sbjct: 303 PSFSPDGSQIVFESDRSGTQQLYIMPVGGGEPT----RISFGQGRYGTPVWSPRGDLIAF 358
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA----GPEGSGDVDRERINHVCFSADGEWL 556
+ F + V++ DGS R + + GP ++ +G +
Sbjct: 359 TKQSKG-----RFHIGVMRTDGSEERLLTASFLDEGP--------------TWAPNGRVI 399
Query: 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+FT Q LY V + G L+R+ G + P+W P
Sbjct: 400 MFTRET-----------QGEQGSASLYSVDISGRNLKRVRTEGAAS-DPSWSP 440
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P PDG+ +V+ + G+ ++F LD +G+ +LT P I+T PS+SP G I F
Sbjct: 259 PRFHPDGQTVVYSLTQGGNTDIFSLDINSGQST----RLTQAPSIETAPSFSPDGSQIVF 314
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LY++ G RI G G R +S G+ + FT
Sbjct: 315 ESDRSGTQQ-----LYIMPVGGGEPTRISF----GQG-----RYGTPVWSPRGDLIAFT- 359
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
Q + + V++ DGS R LT + + G P W P ++
Sbjct: 360 -------------KQSKGRFHIGVMRTDGSEERLLTASFLDEG-PTWAPNGRV 398
>gi|345304084|ref|YP_004825986.1| surface antigen (D15) [Rhodothermus marinus SG0.5JP17-172]
gi|345113317|gb|AEN74149.1| surface antigen (D15) [Rhodothermus marinus SG0.5JP17-172]
Length = 1028
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 33/179 (18%)
Query: 438 NAFPSCSPDGKFLVFRSGRSGHK-NLFVLDAVNGEFNGDIRQLTDGP------WIDTMPS 490
N P+ SPDG+++ F S R +LFV DA G+ + P +I++ S
Sbjct: 297 NLAPALSPDGRYVAFLSERDLFTIDLFVADAETGKVLRRLSSSASNPHFDAIRFINSSGS 356
Query: 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS 550
WSP G AF + + + ++L + + RRI V G I+++ +S
Sbjct: 357 WSPDGQRFAFITFARGNNEIAIWNLRKSELE----RRIAVKGVGA--------IHNLAWS 404
Query: 551 ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
DG + F+ G + DLY++ L+ + +R+LT + Y + PAW P
Sbjct: 405 PDGRTIAFSGLSGGI--------------SDLYLLDLETNQVRKLTDDRYADLQPAWSP 449
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503
SPDG+ + F G +L++LD + +R+LTD + D P+WSP G IAF S+
Sbjct: 404 SPDGRTIAFSGLSGGISDLYLLDLETNQ----VRKLTDDRYADLQPAWSPDGRTIAFVSD 459
Query: 504 RHNPDNVE 511
R PD +
Sbjct: 460 R-GPDGTD 466
>gi|91773135|ref|YP_565827.1| WD40-like beta propeller protein [Methanococcoides burtonii DSM
6242]
gi|91712150|gb|ABE52077.1| TolB-like beta propeller protein [Methanococcoides burtonii DSM
6242]
Length = 416
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 23/176 (13%)
Query: 324 ELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPT 383
+L R + ++ DG I F + N GI I DGS + L+ D +A+ WSP
Sbjct: 202 KLTTSRKDNIGATWRSDGEKIAFVSNESGNGGIWIMNKDGSDKIQLV-DGSAYNIDWSPD 260
Query: 384 EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSC 443
++Y E T I + +D +D +N++ + + K + ++P
Sbjct: 261 GTKIVYVKG----DHENYTSSI----WVMD-TDGSNKKPLTNNSKYFVSQ-----SYPDW 306
Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
SPDG +VF SG G ++++ N + IR + +G MP WSPKGD I
Sbjct: 307 SPDGSKIVFNSGNIGEYEIWIM---NSDGTDQIR-IDEG----LMPQWSPKGDKIV 354
>gi|284116166|ref|ZP_06386712.1| WD40 domain protein beta Propeller [Candidatus Poribacteria sp.
WGA-A3]
gi|283829532|gb|EFC33886.1| WD40 domain protein beta Propeller [Candidatus Poribacteria sp.
WGA-A3]
Length = 312
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 94/228 (41%), Gaps = 28/228 (12%)
Query: 307 EGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHD---FELNAGIKIAKSDG 363
+G I + P S L R + +FP +SP G ++F D F L+ + + DG
Sbjct: 14 DGNREIYMMNPDGSDQVRLTNHRADDTFPVWSPTGERVLFASDRDRFTLSRDLYLMDPDG 73
Query: 364 SK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREE 422
R K +WSP K + Y+ + A + I + D +EE
Sbjct: 74 KNVRRVFGKSEDRSAATWSPDGKQIAYSRR----ELNGAYIYIGTI--------DGKKEE 121
Query: 423 IPCDVKILTKEETGNNAFPSCSPDGKFLVFRSG-RSGHKNLFVLDAVNGEFNGDIRQLTD 481
+ G+ + P+ SPDG + F SG + + +LD + +
Sbjct: 122 ---------RMAIGDGS-PAWSPDGTQIAFLSGFENKQVRINILDVRTKKQKVLFPREAK 171
Query: 482 GPWIDTMPSWSPKGDLIAFSSN-RHNPDNVEAFSLYVIKPDGSGLRRI 528
WI+ WS D +AFS N +NV+ +LY + DG+GL+RI
Sbjct: 172 PSWINGDLVWSLTTDQLAFSWNPGAKKENVDMETLYTLNSDGTGLKRI 219
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 37/172 (21%)
Query: 445 PDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
P +VF S R G++ ++++ N + + +R LT+ DT P WSP G+ + F+S+R
Sbjct: 2 PTTAKVVFTSERDGNREIYMM---NPDGSDQVR-LTNHRADDTFPVWSPTGERVLFASDR 57
Query: 505 HNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL-- 562
+ LY++ PDG +RR+ + S +S DG+ + ++
Sbjct: 58 DR--FTLSRDLYLMDPDGKNVRRVFGKSEDRSA---------ATWSPDGKQIAYSRRELN 106
Query: 563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP-GNQL 613
GA +Y+ +DG R+ +G+PAW P G Q+
Sbjct: 107 GAY----------------IYIGTIDGKKEERM---AIGDGSPAWSPDGTQI 139
>gi|425746296|ref|ZP_18864326.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter
baumannii WC-323]
gi|425486173|gb|EKU52545.1| Tol-Pal system beta propeller repeat protein TolB [Acinetobacter
baumannii WC-323]
Length = 427
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 89/196 (45%), Gaps = 32/196 (16%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++IA +DG + T++ R + +W+P K + Y S F+++R + + ++
Sbjct: 179 LQIADTDGEQPKTVLSSRDPILSPAWTPDAKKIAYVS----FETKRPAIYLQDLA----- 229
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ E+ + G N PS SPDGK ++F + G+ ++ +D +
Sbjct: 230 ---TGQREVLASFR-------GLNGAPSFSPDGKSMLFTASMHGNPEVYQMDLSTRQ--- 276
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-- 532
++++T+ IDT +SP G F+S+R + +S D S ++R+ G
Sbjct: 277 -VQRMTNDSAIDTEARYSPDGKSFIFTSDRGGSPQIYRYSF-----DNSSVKRLTFKGAF 330
Query: 533 -PEGSGDVDRERINHV 547
G+ D ++I V
Sbjct: 331 NARGTLSADGKKIALV 346
>gi|389682075|ref|ZP_10173418.1| Tol-Pal system beta propeller repeat protein TolB [Pseudomonas
chlororaphis O6]
gi|425901124|ref|ZP_18877715.1| Tol-Pal system beta propeller repeat protein TolB [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
gi|388553949|gb|EIM17199.1| Tol-Pal system beta propeller repeat protein TolB [Pseudomonas
chlororaphis O6]
gi|397883883|gb|EJL00370.1| Tol-Pal system beta propeller repeat protein TolB [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
Length = 433
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 97/225 (43%), Gaps = 31/225 (13%)
Query: 311 TIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD--GSKRWT 368
++ L +A + + +L G +FS + E N + +SD G++ T
Sbjct: 135 SVDQLRDMAHYISDQSFEKLTGIKGAFSTRMLYVTAERFSEKNTRYTLQRSDYDGARAVT 194
Query: 369 LIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDV 427
L++ R + ++P K + Y S F+ +R + + + D RE+I
Sbjct: 195 LLQSREPILSPRFAPDGKRIAYVS----FEQKRPRIFVQHI-------DTGRREQI---- 239
Query: 428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT 487
T E G N P+ SPDG+ L F + G+ +++V++ + + I ++T GP I+T
Sbjct: 240 ---TNFE-GLNGAPAWSPDGQRLAFVLSKDGNPDIYVMNLGSRQ----ISRVTAGPGINT 291
Query: 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
P W G I F+S+R + Y G G R+ G
Sbjct: 292 EPFWGKDGSTIYFTSDRGGKPQI-----YKTSAGGGGAERVTFVG 331
>gi|157825542|ref|YP_001493262.1| translocation protein TolB [Rickettsia akari str. Hartford]
gi|166229986|sp|A8GMX9.1|TOLB_RICAH RecName: Full=Protein TolB; Flags: Precursor
gi|157799500|gb|ABV74754.1| translocation protein TolB precursor [Rickettsia akari str.
Hartford]
Length = 444
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 129/305 (42%), Gaps = 45/305 (14%)
Query: 298 YHRFRGESTEGQSTIPHLEPVAS--PVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG 355
Y + G++ + I ++ S +K + ++ +G+ + +G +V F +A
Sbjct: 152 YEKITGDAGYFDTKIVYVSESTSLPKIKRIALMDYDGANNKYLTNGRSLVLTPRFARSAD 211
Query: 356 IKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS 415
S +KR L+ Y T K + I + R + + + +
Sbjct: 212 KIFYVSYATKRRALV------YEKDLKTGKESVVGDFSGISFAPRFSPDGRKAVMSIAKN 265
Query: 416 DDNNREEIPCDVKILTK--EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
+ EI K L K + G N PS SPDGK +V+ S R+G L+++++ +G
Sbjct: 266 GSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGKKIVYNSDRNGVPQLYIMNS-DGS-- 322
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP 533
D+++++ G T PSWSP+GD IAF+ + + F++ ++K A P
Sbjct: 323 -DVQRISFGGGSYTAPSWSPRGDYIAFTKIIRGAEG-KTFNIGIMK-----------AYP 369
Query: 534 EGSGDVDRERI-------NHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVK 586
+ D +RERI C+S +G ++F WP+ + G +
Sbjct: 370 Q--DDENRERIITSGYLVESPCWSPNGRVIMFAKG----------WPSGAKAPGKNKIFA 417
Query: 587 LDGSG 591
+D +G
Sbjct: 418 IDLTG 422
>gi|343492654|ref|ZP_08731014.1| translocation protein TolB [Vibrio nigripulchritudo ATCC 27043]
gi|342826971|gb|EGU61372.1| translocation protein TolB [Vibrio nigripulchritudo ATCC 27043]
Length = 450
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 24/193 (12%)
Query: 313 PHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG-SKRWTLIK 371
P L A + +L +L G +F +V N + ++IA DG ++R L
Sbjct: 159 PRLREYAHRISDLVYEKLTGEKGAFLTRIAYVVINDKEKFPYQLRIADYDGYNERLVLRS 218
Query: 372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT 431
+ +WSP + + Y S FQ+ RA + + + RE++ +
Sbjct: 219 KQPLMSPAWSPDARKLAYVS----FQNGRAEIYLMDIY-------TGKREKLTSFPR--- 264
Query: 432 KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491
+N P SPDGK L ++G +++LD + + Q+T G +T P W
Sbjct: 265 -----HNGAPRFSPDGKKLALVLSKTGSLQVYILDLQTRK----LEQITRGRANNTEPFW 315
Query: 492 SPKGDLIAFSSNR 504
P G + F+S+R
Sbjct: 316 HPDGQSLIFTSDR 328
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 36/164 (21%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPD + L + S ++G ++++D + G +LT P + P +SP G +A
Sbjct: 225 PAWSPDARKLAYVSFQNGRAEIYLMDI----YTGKREKLTSFPRHNGAPRFSPDGKKLAL 280
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV--CFSADGEWLLF 558
++ + +Y++ L +I R R N+ + DG+ L+F
Sbjct: 281 VLSKTG-----SLQVYILDLQTRKLEQI-----------TRGRANNTEPFWHPDGQSLIF 324
Query: 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
T++ G +P +Y V L RLTW G +N
Sbjct: 325 TSDRGG------------KP--QIYRVNLLDGATNRLTWQGSQN 354
>gi|357407782|ref|YP_004919705.1| amidohydrolase [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|386353228|ref|YP_006051475.1| hypothetical protein [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|337762731|emb|CCB71439.1| Amidohydrolase [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|365811307|gb|AEW99522.1| hypothetical protein SCATT_p13290 [Streptomyces cattleya NRRL 8057
= DSM 46488]
Length = 1058
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG LV + R G +L+ LD +RQLT+GPW D P+WSP G IAF
Sbjct: 95 PVFSPDGSRLVVCAYRGGQFHLWSLD----PDGSGVRQLTEGPWDDRGPAWSPDGTRIAF 150
Query: 501 SSNR-HNPDNVEAFSLYVIK-PDGSGLRRIHVAGPEG 535
+S R +P + ++V++ G LR + G +G
Sbjct: 151 ASERGGDPVAGSPYRIWVLEVATGRLLRLTGLPGQDG 187
Score = 46.2 bits (108), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 18/102 (17%)
Query: 441 PSCSPDGKFLVFRSGRSGHK------NLFVLDAVNGEF------NGDIRQLTDGPWIDTM 488
P+ SPDG + F S R G ++VL+ G G DGPW D
Sbjct: 139 PAWSPDGTRIAFASERGGDPVAGSPYRIWVLEVATGRLLRLTGLPGQDGPSQDGPWEDFD 198
Query: 489 PSWSPKGDLIAFSSNRHNPDN------VEAFSLYVIKPDGSG 524
P+WSP G + F R PD +EA ++ + DGSG
Sbjct: 199 PTWSPDGRRVLFVRGRTVPDPGPAGTVLEARTIAAVAADGSG 240
Score = 42.0 bits (97), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 91/254 (35%), Gaps = 48/254 (18%)
Query: 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTG 393
P+ SPDG I F LN+ S G+ R D T + G
Sbjct: 360 LPALSPDGRRIAFA---ALNSLWVQETSGGTPRRITRADPTRYL--------------LG 402
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEET----GNNAFPSCSPDGKF 449
P++ AR L +DD + + T ET G P+ SPDG
Sbjct: 403 PVW---------ARDGRSLLYTDDRDGLHAVRRHDLATGAETVLAPGGRVHPALSPDGTR 453
Query: 450 LVF--RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS-NRHN 506
L +GR L V D G + G + PSWSP G +A NR N
Sbjct: 454 LACLDMAGR-----LLVRDLSTGAER-VLAAPMGGGGLPGRPSWSPDGRYVALCDRNRLN 507
Query: 507 PDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVM 566
E ++L + G R+H A P S DR V +S DG W+ AV+
Sbjct: 508 QRFREGYNLIRVVDTADGTSRLHTAAPHTSLS-DRYDSGPV-WSPDGRWM-------AVI 558
Query: 567 AEPVSWPNQFQPYG 580
E W +P G
Sbjct: 559 VESALWLLPVRPDG 572
>gi|33152785|ref|NP_874138.1| translocation protein TolB [Haemophilus ducreyi 35000HP]
gi|67462000|sp|Q7VKU3.1|TOLB_HAEDU RecName: Full=Protein TolB; Flags: Precursor
gi|33149009|gb|AAP96527.1| colicin tolerance protein [Haemophilus ducreyi 35000HP]
Length = 426
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 24/150 (16%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A DG +T++K + + WSP + Y + F+++R + +
Sbjct: 182 LRVADYDGFNAFTVVKSKEPLMSPEWSPNGSKLAYVT----FENKRPQIVV--------- 228
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++ + + G+N P+ SPDG L F S + G N+++ + +NG G
Sbjct: 229 ------HDLRSGQRSVVAALKGHNGAPAFSPDGSRLAFASNQDGELNIYIAN-ING---G 278
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
+LT +T PSWSP G +I F+S+R
Sbjct: 279 TPIKLTANVGNNTEPSWSPDGSIIYFTSDR 308
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 81/187 (43%), Gaps = 43/187 (22%)
Query: 325 LRMLRLNGSFPSFSPDGGLIVF--NHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN---- 378
+ L+ + P+FSPDG + F N D ELN I IA +G T IK N
Sbjct: 239 VAALKGHNGAPAFSPDGSRLAFASNQDGELN--IYIANINGG---TPIKLTANVGNNTEP 293
Query: 379 SWSPTEKHVIYTSTGPIFQSERA-TVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGN 437
SWSP + +IY F S+RA + Q+ R+S + + IP +
Sbjct: 294 SWSP-DGSIIY------FTSDRAGSPQVYRMS-------SSGNDVIPIGTR--------G 331
Query: 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497
+ S DGK L+ +G N+ D +G ++ ++D PS SP G +
Sbjct: 332 SYNAKASSDGKNLIMIAG----DNVVKQDLTSGS-----TEVLSSTFLDESPSISPNGIM 382
Query: 498 IAFSSNR 504
I +SS +
Sbjct: 383 IIYSSTK 389
>gi|422007889|ref|ZP_16354874.1| translocation protein TolB [Providencia rettgeri Dmel1]
gi|414096024|gb|EKT57683.1| translocation protein TolB [Providencia rettgeri Dmel1]
Length = 430
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T PSW P
Sbjct: 245 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPSWMPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+ ++S D +Y I +G R+ G + D D S DG +L
Sbjct: 301 TLVYTS-----DQAGRPQIYKININGGSPERVSWEGTQNQ-DAD--------VSPDGTFL 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSGG 353
>gi|399017583|ref|ZP_10719774.1| tol-pal system beta propeller repeat protein TolB [Herbaspirillum
sp. CF444]
gi|398103181|gb|EJL93354.1| tol-pal system beta propeller repeat protein TolB [Herbaspirillum
sp. CF444]
Length = 433
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 113/289 (39%), Gaps = 77/289 (26%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A +DG ++ + SWSP V Y S F++++ + I
Sbjct: 184 LEVADADGEGVQVALRSNEPIISPSWSPDGGKVAYVS----FEAKKPVIYI--------- 230
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ + + L G+N+ P+ +PDG L R G +++ +N + +G
Sbjct: 231 ------QNLVTRQRTLVANFKGSNSAPAWAPDGSRLAVALTRDGLTQVYI---INADGSG 281
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-- 532
+R+LT+ IDT P +SP G+ + F+S+R + Y + P+G +R+ G
Sbjct: 282 -LRRLTNTAGIDTEPRFSPDGNYVYFTSDRSGGPQI-----YKVSPNGGEAQRVTFGGSY 335
Query: 533 -------PEGS-------------------GDVDRERINHVC------FSADGEWLLFTA 560
P+G + +R++ FS +G+++++
Sbjct: 336 NISPRISPDGKTLAFISRREGKFQLYALDLTNGQEQRLSDTVKDESPSFSPNGKYIMYAT 395
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
G G L +V +DG +RLT + P W P
Sbjct: 396 ESGR--------------RGSLAIVSVDGRIKQRLTTQVGDIREPTWGP 430
Score = 42.4 bits (98), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 59/136 (43%), Gaps = 11/136 (8%)
Query: 28 FVNAPKFHEHRLTDGTSINFNAQFV-DGQDQTIAFISERSGSPRIYQTRPGSSKTELLPS 86
+NA RLT+ I+ +F DG + F S+RSG P+IY+ P + + +
Sbjct: 274 IINADGSGLRRLTNTAGIDTEPRFSPDGN--YVYFTSDRSGGPQIYKVSPNGGEAQRVTF 331
Query: 87 IPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPS 146
R L FIS E Q LY+ DL + RL+ V D SPS
Sbjct: 332 GGSYNISPRISPDGKTLAFISRREGKFQ-------LYALDLTNGQEQRLSDT-VKDESPS 383
Query: 147 VSYSGKFIAVASYESR 162
S +GK+I A+ R
Sbjct: 384 FSPNGKYIMYATESGR 399
>gi|388565811|ref|ZP_10152293.1| Tol-Pal system beta propeller repeat protein TolB [Hydrogenophaga
sp. PBC]
gi|388266974|gb|EIK92482.1| Tol-Pal system beta propeller repeat protein TolB [Hydrogenophaga
sp. PBC]
Length = 426
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 80/206 (38%), Gaps = 38/206 (18%)
Query: 358 IAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD 416
+A +DG + R L SW+P + Y S F+S + +
Sbjct: 179 VADADGENARAALTSPEPIISPSWAPGGGQLAYVS----FESRKPVIYA----------- 223
Query: 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI 476
E+ + L G+N+ P+ SPDG+ +V SG+ L+ +DA GE
Sbjct: 224 ----HEVASGKRRLLANFRGSNSAPAWSPDGRSVVATLSLSGNAQLYTMDANGGE----P 275
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS 536
R+LT IDT P +S G I F S+R + Y + P G +R+ G
Sbjct: 276 RRLTQSASIDTEPVFSADGKQIYFVSDRGGSPQI-----YRMAPQGGNAQRVTFTGNYNI 330
Query: 537 GDVDRERINHVCFSADGEWLLFTANL 562
S DG WL F + +
Sbjct: 331 SP---------SVSPDGRWLAFISRV 347
>gi|374850519|dbj|BAL53506.1| WD-40 repeat-containing protein [uncultured Chloroflexi bacterium]
Length = 546
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489
LT E + A P+ P + + F S R+GH N+F+LD + N QLT+ P P
Sbjct: 25 LTDGEWSDTA-PALHPGSRQIAFASNRNGHWNIFLLDWPRAQIN----QLTNYPTYAASP 79
Query: 490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526
SWSP G +AF++ H DN+E L + P +R
Sbjct: 80 SWSPDGRWLAFTAYLH--DNLEIAILSMANPQQEPIR 114
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
A PS SPDG++L F + + + +L N + IR LT+ P D+ P+W+P G I
Sbjct: 77 ASPSWSPDGRWLAFTAYLHDNLEIAILSMANPQ-QEPIR-LTNDPAADSSPAWAPGGRQI 134
Query: 499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLF 558
AF S R +++ ++ D +G R + ER+ +S DG+ LL+
Sbjct: 135 AFVSTRSGNNDI-----WLADLDKTGDDRFRNL---SQTPMVTERLPR--WSPDGKKLLW 184
Query: 559 TAN 561
AN
Sbjct: 185 AAN 187
>gi|126725523|ref|ZP_01741365.1| translocation protein TolB precursor [Rhodobacterales bacterium
HTCC2150]
gi|126704727|gb|EBA03818.1| translocation protein TolB precursor [Rhodobacterales bacterium
HTCC2150]
Length = 444
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 9/83 (10%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDGK +VF S RSG++ ++V+ A GE ++++ G P WSP+GD IAF
Sbjct: 304 PSYSPDGKQIVFESDRSGNQQIYVMPAGGGE----PKRISFGAGRYGTPVWSPRGDYIAF 359
Query: 501 SSNRHNPDNVEAFSLYVIKPDGS 523
+ N F + V++ DGS
Sbjct: 360 TKQ-----NKGRFHIGVMRTDGS 377
>gi|365848618|ref|ZP_09389092.1| Tol-Pal system beta propeller repeat protein TolB [Yokenella
regensburgei ATCC 43003]
gi|364570500|gb|EHM48111.1| Tol-Pal system beta propeller repeat protein TolB [Yokenella
regensburgei ATCC 43003]
Length = 431
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 18/125 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N PS SPDG L F ++G NL+V+D +G+ IRQ+T+G +T PSW P
Sbjct: 246 HNGAPSFSPDGSKLAFALSKTGSLNLYVMDIGSGQ----IRQVTNGRSNNTEPSWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EG+ + D + S+DG+++
Sbjct: 302 TLAFTSDQAGRPQV-----YKVGINGGAPQRISW---EGNQNQDAD------VSSDGKFM 347
Query: 557 LFTAN 561
+ ++
Sbjct: 348 VMVSS 352
Score = 42.4 bits (98), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + PS+SP G +AF
Sbjct: 206 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPQHNGAPSFSPDGSKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 262 ALSKTG-----SLNLYVMDIGSGQIRQVTNG---------RSNNTEPSWFPDSQTLAFTS 307
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R++W G +N
Sbjct: 308 DQAG------------RP--QVYKVGINGGAPQRISWEGNQN 335
>gi|448427334|ref|ZP_21583687.1| dipeptidyl aminopeptidase/acylaminoacyl peptidase [Halorubrum
terrestre JCM 10247]
gi|445678785|gb|ELZ31270.1| dipeptidyl aminopeptidase/acylaminoacyl peptidase [Halorubrum
terrestre JCM 10247]
Length = 702
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 26/150 (17%)
Query: 439 AFPSCSPDGKFLVF-----RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
A P SPDG + F S ++++DA +GD R+LT D P WSP
Sbjct: 16 ADPRISPDGDRVAFVRRQPNDDDSYETTVYLVDAAG---DGDPRRLTLPEGSDAEPRWSP 72
Query: 494 KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH--VAGPEGSGDVDRERINHVCFSA 551
GD IAF+S R D+ + L+V+ DG RR+ V G ++ + +S
Sbjct: 73 SGDRIAFTSTRGADDDRQ--QLWVLPLDGGEARRVTDVVGG-----------VSSIAWSP 119
Query: 552 DGEWLLFTANLGAVMAEP---VSWPNQFQP 578
DGE + F ++ A E ++ P++++P
Sbjct: 120 DGERIAFVQSVTADDREADRDLAVPDEYEP 149
>gi|213582179|ref|ZP_03364005.1| translocation protein TolB [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
Length = 172
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 94 HNGAPAFSPDGTKLAFALSKTGSLNLYVMDLASGQ----IRQITDGRSNNTEPTWFPDSQ 149
Query: 497 LIAFSSNR 504
+AF+S++
Sbjct: 150 TLAFTSDQ 157
>gi|83943918|ref|ZP_00956375.1| translocation protein TolB precursor [Sulfitobacter sp. EE-36]
gi|83954491|ref|ZP_00963202.1| translocation protein TolB precursor [Sulfitobacter sp. NAS-14.1]
gi|83840775|gb|EAP79946.1| translocation protein TolB precursor [Sulfitobacter sp. NAS-14.1]
gi|83845165|gb|EAP83045.1| translocation protein TolB precursor [Sulfitobacter sp. EE-36]
Length = 440
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG +VF S RSG + L+++ A GE +++ G P WSP+GDL+AF
Sbjct: 300 PSYSPDGSRIVFESDRSGSQQLYIMPATGGEAT----RISFGEGRYGTPVWSPRGDLVAF 355
Query: 501 SSNRHNPDNVEAFSLYVIKPDGS 523
+ N F + V++ DGS
Sbjct: 356 TKQ-----NKGRFHIGVMRLDGS 373
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 33/186 (17%)
Query: 428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT 487
++L E + P SP G +V+ + G+ +++ +D G+ +LT+ P I+T
Sbjct: 243 RVLESAEGTMSFAPRFSPSGNTVVYSLTQGGNTDIYTMDINTGQST----RLTNTPAIET 298
Query: 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV 547
PS+SP G I F S+R LY++ G RI EG R
Sbjct: 299 APSYSPDGSRIVFESDRSGSQQ-----LYIMPATGGEATRISFG--EG-------RYGTP 344
Query: 548 CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
+S G+ + FT Q + + V++LDGS R LT + + G P W
Sbjct: 345 VWSPRGDLVAFT--------------KQNKGRFHIGVMRLDGSEERLLTASFLDEG-PTW 389
Query: 608 HPGNQL 613
P ++
Sbjct: 390 APNGRV 395
>gi|448514140|ref|ZP_21616892.1| dipeptidyl aminopeptidase/acylaminoacyl peptidase [Halorubrum
distributum JCM 9100]
gi|448526344|ref|ZP_21619798.1| dipeptidyl aminopeptidase/acylaminoacyl peptidase [Halorubrum
distributum JCM 10118]
gi|445692808|gb|ELZ44977.1| dipeptidyl aminopeptidase/acylaminoacyl peptidase [Halorubrum
distributum JCM 9100]
gi|445699004|gb|ELZ51039.1| dipeptidyl aminopeptidase/acylaminoacyl peptidase [Halorubrum
distributum JCM 10118]
Length = 702
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 26/150 (17%)
Query: 439 AFPSCSPDGKFLVF-----RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
A P SPDG + F S ++++DA +GD R+LT D P WSP
Sbjct: 16 ADPRISPDGDRVAFVRRQPNDDDSYETTVYLVDAAG---DGDPRRLTLPEGSDAEPRWSP 72
Query: 494 KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH--VAGPEGSGDVDRERINHVCFSA 551
GD IAF+S R D+ + L+V+ DG RR+ V G ++ + +S
Sbjct: 73 SGDRIAFTSTRGADDDRQ--QLWVLPLDGGEARRVTDVVGG-----------VSSIAWSP 119
Query: 552 DGEWLLFTANLGAVMAEP---VSWPNQFQP 578
DGE + F ++ A E ++ P++++P
Sbjct: 120 DGERIAFVQSVTADDREADRDLAVPDEYEP 149
>gi|319762343|ref|YP_004126280.1| tol-pal system beta propeller repeat protein TolB [Alicycliphilus
denitrificans BC]
gi|330825736|ref|YP_004389039.1| Tol-Pal system beta propeller repeat-containing protein TolB
[Alicycliphilus denitrificans K601]
gi|317116904|gb|ADU99392.1| Tol-Pal system beta propeller repeat protein TolB [Alicycliphilus
denitrificans BC]
gi|329311108|gb|AEB85523.1| Tol-Pal system beta propeller repeat protein TolB [Alicycliphilus
denitrificans K601]
Length = 440
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 121/319 (37%), Gaps = 59/319 (18%)
Query: 301 FRGESTEGQS---TIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIK 357
+G+ GQS T L VA + + +L G FS I + +
Sbjct: 135 VKGQDLGGQSFTVTQADLRLVAHRIADFIYEKLTGERGVFSTR---IAYVTKVGARYSLW 191
Query: 358 IAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD 416
+A +DG + + + +WSP+ + Y S F+S + V + V+
Sbjct: 192 VADADGENAQSALSSPEPIISPAWSPSGAQLAYVS----FESRKPVVYVHDVA------- 240
Query: 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI 476
R + + + G+N+ P+ SPDG+ L R G L+ +DA GE
Sbjct: 241 -TGRRRLIANFR-------GSNSAPAWSPDGRTLAVTLSRDGGSQLYTIDANGGE----P 288
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS 536
R+L IDT P++S G I F S+R + Y + G R+ G
Sbjct: 289 RRLMQSSGIDTEPAFSSDGRSIYFVSDRGGSPQI-----YRVAAGGGNAERVTFNGAYNI 343
Query: 537 GDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596
S DG+WL + + +G L+V+ L + LT
Sbjct: 344 SP---------AISPDGQWLAYISRVGGAF--------------KLHVMDLRSGSVTALT 380
Query: 597 WNGYENGTPAWHPGNQLDL 615
+ + +P++ P ++L L
Sbjct: 381 -DSSADESPSFAPNSRLIL 398
>gi|378722441|ref|YP_005287327.1| translocation protein TolB [Rickettsia rickettsii str. Arizona]
gi|376327465|gb|AFB24703.1| translocation protein TolB [Rickettsia rickettsii str. Arizona]
Length = 444
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 33/177 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ V ++G +++ +D + +LTDG I+T PS+SP G I +
Sbjct: 249 PRFSPDGRKAVMSIAKNGSTHIYEIDLATKR----LHKLTDGFGINTSPSYSPDGTKIVY 304
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS----ADGEWL 556
+S+R+ LY++ DGS ++RI G + R +++ F+ DG
Sbjct: 305 NSDRNGVPQ-----LYIMNSDGSDVQRISFGGGSYAAPSWSPRGDYIAFTKITKGDGGK- 358
Query: 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
T N+G + A P D R+ +GY +P W P ++
Sbjct: 359 --TFNIGIMKACP-----------------QDNKNSERIITSGYLVESPCWSPNGRV 396
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/301 (21%), Positives = 125/301 (41%), Gaps = 37/301 (12%)
Query: 298 YHRFRGESTEGQSTIPHLEPVAS--PVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG 355
Y + G++ + I ++ +S +K + ++ +G+ + +G +V F +A
Sbjct: 152 YEKITGDAGYFDTKIVYVSESSSLPKIKRIALMDYDGANNKYLTNGKSLVLTPRFARSAD 211
Query: 356 IKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS 415
S +KR L+ Y T K + I + R + + + +
Sbjct: 212 KIFYVSYATKRRVLV------YEKDLKTGKESVVGDFPGISFAPRFSPDGRKAVMSIAKN 265
Query: 416 DDNNREEIPCDVKILTK--EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
+ EI K L K + G N PS SPDG +V+ S R+G L+++++ +G
Sbjct: 266 GSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGTKIVYNSDRNGVPQLYIMNS-DGS-- 322
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP---DGSGLRRIHV 530
D+++++ G PSWSP+GD IAF+ D + F++ ++K D RI
Sbjct: 323 -DVQRISFGGGSYAAPSWSPRGDYIAFTKITKG-DGGKTFNIGIMKACPQDNKNSERIIT 380
Query: 531 AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590
+G + C+S +G ++F WP+ + G + +D +
Sbjct: 381 SG---------YLVESPCWSPNGRVIMFAKG----------WPSSAKAPGKNKIFAIDLT 421
Query: 591 G 591
G
Sbjct: 422 G 422
>gi|354593767|ref|ZP_09011810.1| translocation protein TolB [Commensalibacter intestini A911]
gi|353672878|gb|EHD14574.1| translocation protein TolB [Commensalibacter intestini A911]
Length = 453
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ +V R +++V+D +G RQLT IDT P +SP G I F
Sbjct: 266 PRFSPDGRSVVMSVTRGAGSDIYVVDLASGS----KRQLTSSGAIDTSPCYSPDGSKIVF 321
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
SS+R LY++ G G RI
Sbjct: 322 SSDRGGKQQ-----LYIMSASGGGAHRI 344
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG +VF S R G + L+++ A G +++ G P WSP+GD+IAF
Sbjct: 310 PCYSPDGSKIVFSSDRGGKQQLYIMSASGG----GAHRISYGSGSYASPVWSPRGDVIAF 365
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLR 526
FS+ V+ PDG+G R
Sbjct: 366 VRISG------GFSMGVMAPDGTGER 385
>gi|378952506|ref|YP_005209994.1| protein TolB [Pseudomonas fluorescens F113]
gi|359762520|gb|AEV64599.1| TolB [Pseudomonas fluorescens F113]
Length = 426
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 96/225 (42%), Gaps = 31/225 (13%)
Query: 311 TIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD--GSKRWT 368
++ L +A + + +L G +FS + E N + +SD G++ T
Sbjct: 128 SVDQLRDMAHYIADQSFEKLTGIKGAFSTRMLYVTAERFSENNTRYTLQRSDYDGARAVT 187
Query: 369 LIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDV 427
L++ R + ++P K + Y S F+ +R + + + D RE+I
Sbjct: 188 LLQSREPILSPRFAPDGKRIAYVS----FEQKRPRIFVQHI-------DTGRREQI---- 232
Query: 428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT 487
T E G N P+ SPDG L F + G+ +++V++ + I ++T+GP I+T
Sbjct: 233 ---TNFE-GLNGAPAWSPDGSRLAFVLSKDGNPDIYVMNLASRS----ISRVTNGPGINT 284
Query: 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
P W G I F+S+R + Y G G R+ G
Sbjct: 285 EPFWGKDGSTIYFTSDRGGKPQI-----YKTSAGGGGAERVTFVG 324
>gi|350273365|ref|YP_004884678.1| translocation protein tolB [Rickettsia japonica YH]
gi|348592578|dbj|BAK96539.1| translocation protein tolB precursor [Rickettsia japonica YH]
Length = 444
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 127/301 (42%), Gaps = 37/301 (12%)
Query: 298 YHRFRGESTEGQSTIPHLEPVAS--PVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG 355
Y + G++ + I ++ +S +K + ++ +G+ + +G +V F +A
Sbjct: 152 YEKITGDAGYFDTKIVYVSESSSLPKIKRIALMDYDGANNKYLTNGKSLVLTPRFARSAD 211
Query: 356 IKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS 415
S +KR L+ Y T K + I + R + + + +
Sbjct: 212 KIFYVSYATKRRVLV------YEKDLKTGKESVVGDFPGISFAPRFSPDGRKAVMSIAKN 265
Query: 416 DDNNREEIPCDVKILTK--EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473
+ EI K L K + G N PS SPDGK +V+ S R+G L+++++ +G
Sbjct: 266 GSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGKKIVYNSDRNGVPQLYIMNS-DGS-- 322
Query: 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP---DGSGLRRIHV 530
D+++++ G PSWSP+GD IAF+ D + F++ ++K D RI
Sbjct: 323 -DVQRISFGGGSYAAPSWSPRGDYIAFTKITRG-DGGKTFNIGIMKACPQDDENSERIIT 380
Query: 531 AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590
+G + C+S +G ++F WP++ + G + +D +
Sbjct: 381 SG---------YLVESPCWSPNGRVIMFAKG----------WPSRAKAPGKNKIFAIDLT 421
Query: 591 G 591
G
Sbjct: 422 G 422
>gi|337279748|ref|YP_004619220.1| TolB protein [Ramlibacter tataouinensis TTB310]
gi|334730825|gb|AEG93201.1| Candidate TolB protein precursor [Ramlibacter tataouinensis TTB310]
Length = 428
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 92/260 (35%), Gaps = 66/260 (25%)
Query: 379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN 438
+WS + Y S F+S + V + E+ + L G+N
Sbjct: 203 AWSSNGAQLAYVS----FESRKPVVYV---------------HEVASGRRRLLANFRGSN 243
Query: 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
+ P+ SPDG+ L R G L+ +DA GE R+LT IDT P ++P G I
Sbjct: 244 SAPAWSPDGRTLAVTLSREGGSQLYTIDAGGGE----PRRLTQSAGIDTEPLFTPDGRSI 299
Query: 499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLF 558
F S+R V Y + G R+ GS ++ S DG WL +
Sbjct: 300 YFVSDRGGAPQV-----YRMPATGGNPERVTFT---GSYNI------SPALSPDGRWLAY 345
Query: 559 TANLGAVM---------AEPVSWPN-------QFQPYGDLYV-------------VKLDG 589
+ +G PVS + F P G L V LDG
Sbjct: 346 ISRIGGAFKLQVMELAGGAPVSVTDTTADESPSFAPNGRLIVYATRQGGREALMTTTLDG 405
Query: 590 SGLRRLTWNGYENGTPAWHP 609
RL G + P W P
Sbjct: 406 KIKARLAGQGGDIREPDWGP 425
>gi|395761473|ref|ZP_10442142.1| periplasmic protein involved in uptake [Janthinobacterium lividum
PAMC 25724]
Length = 425
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 109/275 (39%), Gaps = 49/275 (17%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A +DG ++ + SWSP V Y S F+ ++ V +
Sbjct: 176 LEVADADGEGIQVALRSNEPIISPSWSPDGTKVAYVS----FEKKKPIVYV--------- 222
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ + + + E G+N+ PS SPDG L R GH ++ VN + +G
Sbjct: 223 ------QNLVTRERTIVSNEKGSNSAPSWSPDGARLAVALSRDGHTQVYT---VNADGSG 273
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-- 532
+R++++ IDT P +S G I F+S+R + Y + G +R+ G
Sbjct: 274 -LRRVSNSSGIDTEPQFSADGQSIYFTSDRSGGPQI-----YRMSVSGGEAKRVTFGGSY 327
Query: 533 ---PEGSGD------VDRERINHVCFSAD---GEWLLF--TANLGAVMAEP----VSWPN 574
P S D + R N ++ D G+ L TAN + P + +
Sbjct: 328 NISPRISSDGKTLAYISRRDGNFQLYALDLASGQELRLSDTANDESPSFSPNGKYIMYAT 387
Query: 575 QFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ L VV +DG +RLT P W P
Sbjct: 388 ESGRRKSLAVVSVDGRVKQRLTTQAGNIKEPTWGP 422
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 29 VNAPKFHEHRLTDGTSINFNAQF-VDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSI 87
VNA R+++ + I+ QF DGQ +I F S+RSG P+IY+ + + +
Sbjct: 267 VNADGSGLRRVSNSSGIDTEPQFSADGQ--SIYFTSDRSGGPQIYRMSVSGGEAKRVTFG 324
Query: 88 PCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSV 147
R + L +IS + Q LY+ DL + + RL+ D SPS
Sbjct: 325 GSYNISPRISSDGKTLAYISRRDGNFQ-------LYALDLASGQELRLSDT-ANDESPSF 376
Query: 148 SYSGKFIAVASYESR 162
S +GK+I A+ R
Sbjct: 377 SPNGKYIMYATESGR 391
>gi|262193458|ref|YP_003264667.1| hypothetical protein [Haliangium ochraceum DSM 14365]
gi|262076805|gb|ACY12774.1| WD40 domain protein beta Propeller [Haliangium ochraceum DSM 14365]
Length = 445
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 31/190 (16%)
Query: 433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
+++G N S SPDG + + G+ ++++ A +G +++LT+ IDT P+WS
Sbjct: 250 KQSGMNTGASWSPDGSKIAVTLSKDGNPEIYIISASSGAI---LQRLTNDRAIDTSPAWS 306
Query: 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV----DRERINHVC 548
P G IAF S+RH + +V+ G RR+ G + V +R+
Sbjct: 307 PDGREIAFVSDRHGGPQI-----FVMSAAGGSPRRVSRNGSYNTTPVWSPRKDKRMLAYT 361
Query: 549 FSADGEWLLFTANLG-----------AVMAEP--------VSWPNQFQPYGDLYVVKLDG 589
G + + T +LG EP +++ ++ + +Y+ DG
Sbjct: 362 TRDGGTFDIVTLDLGTGDMVRITQGQGSNEEPSFSPNGRAIAFASERREGAGIYIANADG 421
Query: 590 SGLRRLTWNG 599
SG +R ++G
Sbjct: 422 SGTQRRVYSG 431
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 81/188 (43%), Gaps = 37/188 (19%)
Query: 447 GKFLVFRSGRSGHKNLFVLDAVNGEFNG-DIRQLTDGPWIDTMPSWSPKGDLIAFSS-NR 504
G + F + SG K + +D F+G +R LT ++ +PSWSP G +AF+S R
Sbjct: 176 GSKMAFVTRGSGGKQVMAMD-----FDGHGVRSLTRNSSLNILPSWSPDGSKVAFTSYMR 230
Query: 505 HNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV---DRERINHVCFSADG--EWLLFT 559
+NPD LYV+ G RI +G D +I V S DG E + +
Sbjct: 231 NNPD------LYVVGAGGGRPNRISKQSGMNTGASWSPDGSKI-AVTLSKDGNPEIYIIS 283
Query: 560 ANLGAVMA-----EPVSWPNQFQPYG-------------DLYVVKLDGSGLRRLTWNGYE 601
A+ GA++ + + P G ++V+ G RR++ NG
Sbjct: 284 ASSGAILQRLTNDRAIDTSPAWSPDGREIAFVSDRHGGPQIFVMSAAGGSPRRVSRNGSY 343
Query: 602 NGTPAWHP 609
N TP W P
Sbjct: 344 NTTPVWSP 351
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 91/249 (36%), Gaps = 69/249 (27%)
Query: 325 LRMLRLNGSF---PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SW 380
+R L N S PS+SPDG + F N + + + G + + K SW
Sbjct: 201 VRSLTRNSSLNILPSWSPDGSKVAFTSYMRNNPDLYVVGAGGGRPNRISKQSGMNTGASW 260
Query: 381 SPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAF 440
SP + T S+ +I + + S + + D I T
Sbjct: 261 SPDGSKIAVT------LSKDGNPEI----YIISASSGAILQRLTNDRAIDTS-------- 302
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAV---------NGEFN------------------ 473
P+ SPDG+ + F S R G +FV+ A NG +N
Sbjct: 303 PAWSPDGREIAFVSDRHGGPQIFVMSAAGGSPRRVSRNGSYNTTPVWSPRKDKRMLAYTT 362
Query: 474 ---------------GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVI 518
GD+ ++T G + PS+SP G IAF+S R E +Y+
Sbjct: 363 RDGGTFDIVTLDLGTGDMVRITQGQGSNEEPSFSPNGRAIAFASERR-----EGAGIYIA 417
Query: 519 KPDGSGLRR 527
DGSG +R
Sbjct: 418 NADGSGTQR 426
>gi|448483261|ref|ZP_21605711.1| dipeptidyl aminopeptidase/acylaminoacyl peptidase [Halorubrum arcis
JCM 13916]
gi|445820783|gb|EMA70586.1| dipeptidyl aminopeptidase/acylaminoacyl peptidase [Halorubrum arcis
JCM 13916]
Length = 702
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 26/150 (17%)
Query: 439 AFPSCSPDGKFLVF-----RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
A P SPDG + F S ++++DA +GD R+LT D P WSP
Sbjct: 16 ADPRISPDGDRVAFVRRQPNDDDSYETTVYLVDAAG---DGDPRRLTLPEGSDAEPRWSP 72
Query: 494 KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH--VAGPEGSGDVDRERINHVCFSA 551
GD IAF+S R D+ + L+V+ DG RR+ V G ++ + +S
Sbjct: 73 SGDRIAFTSTRGADDDRQ--QLWVLPLDGGEARRVTDVVGG-----------VSSIAWSP 119
Query: 552 DGEWLLFTANLGAVMAEP---VSWPNQFQP 578
DGE + F ++ A E ++ P++++P
Sbjct: 120 DGERIAFVQSVTADDREADRDLAVPDEYEP 149
>gi|388543780|ref|ZP_10147070.1| translocation protein TolB [Pseudomonas sp. M47T1]
gi|388278337|gb|EIK97909.1| translocation protein TolB [Pseudomonas sp. M47T1]
Length = 433
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 29/172 (16%)
Query: 362 DGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR 420
DG++ TL++ R + ++P K + Y S F+ +R + + V D R
Sbjct: 188 DGARAVTLLQSREPILSPRYAPDAKRIAYVS----FEQKRPRIFVQNV-------DTGAR 236
Query: 421 EEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT 480
++I T E G N P+ SPDG L F + G+ ++V+D + ++ +LT
Sbjct: 237 QQI-------TNFE-GLNGAPAFSPDGSKLAFVLSKDGNPEIYVMDLASR----NLTRLT 284
Query: 481 DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
+ P IDT P W G I F+S+R + SL G G R+ G
Sbjct: 285 NDPAIDTEPFWGKDGSTIYFTSDRGGKPQIYKQSL-----GGGGATRVTFIG 331
>gi|336316073|ref|ZP_08570975.1| tol-pal system beta propeller repeat protein TolB [Rheinheimera sp.
A13L]
gi|335879563|gb|EGM77460.1| tol-pal system beta propeller repeat protein TolB [Rheinheimera sp.
A13L]
Length = 449
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 109/303 (35%), Gaps = 51/303 (16%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHV 387
+L G +F ++ + + +A DG L++ + + +WSP +
Sbjct: 174 KLTGERGAFLTKIAYVLVRDKADFRYQLVVADYDGENEQVLLRAKEPLMSPAWSPDGTKL 233
Query: 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
Y + F+ ++ + I + R I K G N+ P SPDG
Sbjct: 234 AYVT----FEKRQSQIYIQDIY--------TGRRSILTSFK-------GINSAPKWSPDG 274
Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR-HN 506
+ + + G+ ++V+D +LT+ IDT PSWSP G I FSS R N
Sbjct: 275 RKMAMVLSKDGNAEVYVMDIATKALT----KLTNHRRIDTEPSWSPDGSKIIFSSERGGN 330
Query: 507 PDNVEAFSLYVIKPDGSGLRRIHVAG---------PEGSGDVDRERIN--HVCFSADGEW 555
P +Y + R+ G P+G G V R N + D E
Sbjct: 331 PQ------IYSVNVASGVTERVTFEGEMNLAASYTPDGRGIVMVNRTNGQYNIARMDVES 384
Query: 556 LLFTANLGAVMAE-PVSWPN-QFQPYGDLY-------VVKLDGSGLRRLTWNGYENGTPA 606
+ E P PN Y LY +V +DG RL +PA
Sbjct: 385 RYMQVLTRTYLDESPSIAPNGSMIIYSTLYGSSQVLALVSMDGRFKARLPATNGRVKSPA 444
Query: 607 WHP 609
W P
Sbjct: 445 WSP 447
>gi|448451569|ref|ZP_21592869.1| dipeptidyl aminopeptidase/acylaminoacyl peptidase [Halorubrum
litoreum JCM 13561]
gi|445810425|gb|EMA60450.1| dipeptidyl aminopeptidase/acylaminoacyl peptidase [Halorubrum
litoreum JCM 13561]
Length = 702
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 26/150 (17%)
Query: 439 AFPSCSPDGKFLVF-----RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
A P SPDG + F S ++++DA +GD R+LT D P WSP
Sbjct: 16 ADPRISPDGDRVAFVRRQPNDDDSYETTVYLVDAAG---DGDPRRLTLPEGSDAEPRWSP 72
Query: 494 KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH--VAGPEGSGDVDRERINHVCFSA 551
GD IAF+S R D+ + L+V+ DG RR+ V G ++ + +S
Sbjct: 73 SGDRIAFTSTRGADDDRQ--QLWVLPLDGGEARRVTDVVGG-----------VSSIAWSP 119
Query: 552 DGEWLLFTANLGAVMAEP---VSWPNQFQP 578
DGE + F ++ A E ++ P++++P
Sbjct: 120 DGERIAFVQSVTADDREADRDLAVPDEYEP 149
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.138 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,654,212,869
Number of Sequences: 23463169
Number of extensions: 547890728
Number of successful extensions: 989187
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 2746
Number of HSP's that attempted gapping in prelim test: 963996
Number of HSP's gapped (non-prelim): 18683
length of query: 642
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 493
effective length of database: 8,863,183,186
effective search space: 4369549310698
effective search space used: 4369549310698
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)