BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039497
(642 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W8B|B Chain B, Crystal Structure Of Processed Tolb In Complex With Pal
pdb|2W8B|D Chain D, Crystal Structure Of Processed Tolb In Complex With Pal
pdb|2W8B|F Chain F, Crystal Structure Of Processed Tolb In Complex With Pal
Length = 409
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 279
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 280 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 325
Query: 557 LFTANLGA 564
+ ++ G
Sbjct: 326 VMVSSNGG 333
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 184 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 239
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 240 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 285
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 286 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 313
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 434 ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
E N S DGKF+V S G +++ D G Q+ ++D PS +P
Sbjct: 309 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-----QVLSSTFLDETPSLAP 363
Query: 494 KGDLIAFSSNR 504
G ++ +SS++
Sbjct: 364 NGTMVIYSSSQ 374
>pdb|3IAX|A Chain A, The Crystal Structure Of The Tolb Box Of Colicin A In
Complex With Tolb Reveals Important Differences In The
Recruitment Of The Common Tolb Translocation Portal Used
By Group A Colicins
Length = 438
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 347 VMVSSNG 353
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 205 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 260
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 261 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 306
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 307 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 334
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 434 ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
E N S DGKF+V S G +++ D G Q+ ++D PS +P
Sbjct: 330 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-----QVLSSTFLDETPSLAP 384
Query: 494 KGDLIAFSSNR 504
G ++ +SS++
Sbjct: 385 NGTMVIYSSSQ 395
>pdb|1C5K|A Chain A, The Structure Of Tolb, An Essential Component Of The Tol-
Dependent Translocation System And Its Interactions With
The Translocation Domain Of Colicin E9
pdb|2IVZ|A Chain A, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
pdb|2IVZ|B Chain B, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
pdb|2IVZ|C Chain C, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
pdb|2IVZ|D Chain D, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
Length = 439
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 246 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 302 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 347
Query: 557 LFTANLG 563
+ ++ G
Sbjct: 348 VMVSSNG 354
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 206 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 262 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 307
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 308 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 335
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 434 ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
E N S DGKF+V S G +++ D G Q+ ++D PS +P
Sbjct: 331 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-----QVLSSTFLDETPSLAP 385
Query: 494 KGDLIAFSSNR 504
G ++ +SS++
Sbjct: 386 NGTMVIYSSSQ 396
>pdb|2HQS|A Chain A, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|B Chain B, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|D Chain D, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|F Chain F, Crystal Structure Of TolbPAL COMPLEX
Length = 415
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 279
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 280 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 325
Query: 557 LFTANLGA 564
+ ++ G
Sbjct: 326 VMVSSNGG 333
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 184 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 239
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 240 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 285
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 286 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 313
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 434 ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
E N S DGKF+V S G +++ D G Q+ ++D PS +P
Sbjct: 309 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-----QVLSSTFLDETPSLAP 363
Query: 494 KGDLIAFSSNR 504
G ++ +SS++
Sbjct: 364 NGTMVIYSSSQ 374
>pdb|2W8B|A Chain A, Crystal Structure Of Processed Tolb In Complex With Pal
Length = 409
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V+D +G+ IRQ+TDG +T P+W P
Sbjct: 224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 279
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+AF+S++ V Y + +G +RI EGS + D + S+DG+++
Sbjct: 280 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 325
Query: 557 LFTANLGA 564
+ ++ G
Sbjct: 326 VMVSSNGG 333
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 184 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 239
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV+ +R++ R + D + L FT+
Sbjct: 240 ALSKTG-----SLNLYVMDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 285
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 286 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 313
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 434 ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
E N S DGKF+V S G +++ D G Q+ ++D PS +P
Sbjct: 309 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-----QVLSSTFLDETPSLAP 363
Query: 494 KGDLIAFSSNR 504
G ++ +SS++
Sbjct: 364 NGTMVLYSSSQ 374
>pdb|1CRZ|A Chain A, Crystal Structure Of The E. Coli Tolb Protein
Length = 403
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 10/118 (8%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
+N P+ SPDG L F ++G NL+V D +G+ IRQ+TDG +T P+W P
Sbjct: 218 HNGAPAFSPDGSKLAFALSKTGSLNLYVXDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 273
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS-GDVDRERINHVCFSADG 553
+AF+S++ V Y + +G +RI G + DV + V S++G
Sbjct: 274 NLAFTSDQAGRPQV-----YKVNINGGAPQRITWEGSQNQDADVSSDGKFXVXVSSNG 326
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 32/162 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L + + SG L + NG +RQ+ P + P++SP G +AF
Sbjct: 178 PAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGSKLAF 233
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ ++ + +LYV +R++ R + D + L FT+
Sbjct: 234 ALSKTG-----SLNLYVXDLASGQIRQVTDG---------RSNNTEPTWFPDSQNLAFTS 279
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
+ +P +Y V ++G +R+TW G +N
Sbjct: 280 DQAG------------RP--QVYKVNINGGAPQRITWEGSQN 307
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 434 ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
E N S DGKF V S G +++ D G Q+ ++D PS +P
Sbjct: 303 EGSQNQDADVSSDGKFXVXVSSNGGQQHIAKQDLATGGV-----QVLSSTFLDETPSLAP 357
Query: 494 KGDLIAFSSNR 504
G + +SS++
Sbjct: 358 NGTXVIYSSSQ 368
>pdb|2OJH|A Chain A, The Structure Of Putative Tolb From Agrobacterium
Tumefaciens
Length = 297
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 24/167 (14%)
Query: 337 FSPDGGLIVFNHDFEL-NAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPI 395
SPDG L + E + I + S G K+ ++++ WSP K Y
Sbjct: 92 ISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLXTKNLPSYWHGWSPDGKSFTYCGI--- 148
Query: 396 FQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSG 455
D D +I V+ G N P SPDG+++ F S
Sbjct: 149 ----------------RDQVFDIYSXDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS 192
Query: 456 RSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
R+G ++ + V+G + ++TD + D P SP GD + F S
Sbjct: 193 RTGQXQIWRV-RVDGS---SVERITDSAYGDWFPHPSPSGDKVVFVS 235
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 83/233 (35%), Gaps = 58/233 (24%)
Query: 379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN 438
+WSP K+++ S G ++ R+S DPS + K+ T T N
Sbjct: 48 NWSPDGKYLLLNSEGLLY----------RLSLAGDPSPE----------KVDTGFATICN 87
Query: 439 AFPSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497
SPDG G +++L + G + L WSP G
Sbjct: 88 NDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLXTKNLPS-----YWHGWSPDGKS 142
Query: 498 IAFSSNRHNPDNVEAFSLYVIKPD-GSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
+ R + F +Y D G R H G R + +S DG W+
Sbjct: 143 FTYCGIRD-----QVFDIYSXDIDSGVETRLTHGEG----------RNDGPDYSPDGRWI 187
Query: 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
F + S Q Q ++ V++DGS + R+T + Y + P HP
Sbjct: 188 YFNS----------SRTGQXQ----IWRVRVDGSSVERITDSAYGDWFP--HP 224
>pdb|2X7V|A Chain A, Crystal Structure Of Thermotoga Maritima Endonuclease Iv
In The Presence Of Zinc
pdb|2X7W|A Chain A, Crystal Structure Of Thermotoga Maritima Endonuclease Iv
In The Presence Of Cadmium And Zinc
Length = 287
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 114 QIF----KSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFH 169
QIF +SWSA +D A+KF R +D+ + +SG I +AS + W
Sbjct: 30 QIFPHNARSWSAKLPSDEAATKFKREMKKHGIDWENAFCHSGYLINLASPKDDIWQKSVE 89
Query: 170 ELNTDIVV 177
L ++ +
Sbjct: 90 LLKKEVEI 97
>pdb|4HNO|A Chain A, High Resolution Crystal Structure Of Dna
Apurinic/apyrimidinic (ap) Endonuclease Iv Nfo From
Thermatoga Maritima
Length = 288
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 114 QIF----KSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFH 169
QIF +SWSA +D A+KF R +D+ + +SG I +AS + W
Sbjct: 33 QIFPHNARSWSAKLPSDEAATKFKREMKKHGIDWENAFCHSGYLINLASPKDDIWQKSVE 92
Query: 170 ELNTDIVV 177
L ++ +
Sbjct: 93 LLKKEVEI 100
>pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From
Stenotrophomonas Maltophilia
Length = 741
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503
SPD + L+F G L++ D + E +RQLT G T SPKG ++F
Sbjct: 117 SPDAQRLLFPLG----GELYLYD-LKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG 171
Query: 504 RH 505
R+
Sbjct: 172 RN 173
>pdb|1GXY|A Chain A, Crystal Structure Of The Eucaryotic
Mono-Adp-Ribosyltransferase Art2.2; Crystal Form A (P21)
pdb|1GXY|B Chain B, Crystal Structure Of The Eucaryotic
Mono-Adp-Ribosyltransferase Art2.2; Crystal Form A (P21)
pdb|1GXZ|A Chain A, Crystal Structure Of The Eucaryotic Mono-Adp-
Ribosyltransferase Art2.2; Crystal Form B (P212121)
pdb|1GXZ|B Chain B, Crystal Structure Of The Eucaryotic Mono-Adp-
Ribosyltransferase Art2.2; Crystal Form B (P212121)
pdb|1GY0|A Chain A, Crystal Structure Of The Eucaryotic
Mono-Adp-Ribosyltransferase Art2.2; Crystal Form C
(P3121)
pdb|1OG1|A Chain A, Crystal Structure Of The Eucaryotic
Mono-Adp-Ribosyltransferase Art2.2 In Complex With Tad
Length = 226
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 344 IVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPI 395
++ DF +NA +K+A + KRW IK ++ ++ + TG I
Sbjct: 31 LLLQEDFNMNAKLKVAWEEAKKRWNNIKPSRSYPKGFNDFHGTALVAYTGSI 82
>pdb|1OG4|A Chain A, Crystal Structure Of The Eucaryotic
Mono-adp-ribosyltransferase Art2.2 Mutant E189a In
Complex With Nadh
Length = 226
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 344 IVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPI 395
++ DF +NA +K+A + KRW IK ++ ++ + TG I
Sbjct: 31 LLLQEDFNMNAKLKVAWEEAKKRWNNIKPSRSYPKGFNDFHGTALVAYTGSI 82
>pdb|1OG3|A Chain A, Crystal Structure Of The Eucaryotic
Mono-Adp-Ribosyltransferase Art2.2 Mutant E189i In
Complex With Nad
Length = 226
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 344 IVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPI 395
++ DF +NA +K+A + KRW IK ++ ++ + TG I
Sbjct: 31 LLLQEDFNMNAKLKVAWEEAKKRWNNIKPSRSYPKGFNDFHGTALVAYTGSI 82
>pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552
Length = 709
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 84/204 (41%), Gaps = 39/204 (19%)
Query: 356 IKIAKSDGSKRWTLIKDRTAF-YNSWSPTEKHVIYTS----TGPIFQSERATVQIARVSF 410
IK K DG+K + +R F +W+ K + Y S G +E +T ++ +
Sbjct: 152 IKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNSYPQQDGKSDGTETSTNLHQKLYY 211
Query: 411 QL---DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA 467
+ D S+D E P + K + E S DG++ V S R G D
Sbjct: 212 HVLGTDQSEDILCAEFPDEPKWMGGAEL--------SDDGRY-VLLSIREG------CDP 256
Query: 468 VNGEFNGDIRQLTDG-----PWIDTMPSW-------SPKGDLIAFSSNRHNPDNVEAFSL 515
VN + D++Q + G W+ + ++ + +G + F +NRH+P N ++
Sbjct: 257 VNRLWYCDLQQESSGIAGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSP-NYRVINI 315
Query: 516 YVIKPDGSGLRRIHVAGPEGSGDV 539
P+ S + V PE DV
Sbjct: 316 DFTDPEESKWK---VLVPEHEKDV 336
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of
The Yeast Chd1 Chromatin Remodeler
Length = 800
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 484 WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY 516
W+DT W+P + I + N+ + D + + Y
Sbjct: 301 WLDTFEKWAPDLNCICYMGNQKSRDTIREYEFY 333
>pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Inhibitor
pdb|1E8N|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Peptide
pdb|1UOO|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Arg-Pro
pdb|1UOP|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Glu-Pro
pdb|1UOQ|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Glu-Phe-Ser-Pro
pdb|1H2Z|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 39/204 (19%)
Query: 356 IKIAKSDGSKRWTLIKDRTAF-YNSWSPTEKHVIYTS----TGPIFQSERATVQIARVSF 410
IK K DG+K + +R F +W+ K + Y + G +E +T ++ +
Sbjct: 153 IKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYY 212
Query: 411 QL---DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA 467
+ D S+D E P + K + E S DG++ V S R G D
Sbjct: 213 HVLGTDQSEDILCAEFPDEPKWMGGAEL--------SDDGRY-VLLSIREG------CDP 257
Query: 468 VNGEFNGDIRQLTDG-----PWIDTMPSW-------SPKGDLIAFSSNRHNPDNVEAFSL 515
VN + D++Q ++G W+ + ++ + +G + F +NRH+P N ++
Sbjct: 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSP-NYRLINI 316
Query: 516 YVIKPDGSGLRRIHVAGPEGSGDV 539
P+ S + V PE DV
Sbjct: 317 DFTDPEESKWK---VLVPEHEKDV 337
>pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently
Bound Inhibitor Z-Pro-Prolinal
pdb|1H2W|A Chain A, Prolyl Oligopeptidase From Porcine Brain
pdb|3EQ7|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ8|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ9|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|2XDW|A Chain A, Inhibition Of Prolyl Oligopeptidase With A Synthetic
Unnatural Dipeptide
pdb|4AMY|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-1
pdb|4AMZ|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-2
pdb|4AN0|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-3
pdb|4AN1|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-4
Length = 710
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 39/204 (19%)
Query: 356 IKIAKSDGSKRWTLIKDRTAF-YNSWSPTEKHVIYTS----TGPIFQSERATVQIARVSF 410
IK K DG+K + +R F +W+ K + Y + G +E +T ++ +
Sbjct: 153 IKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYY 212
Query: 411 QL---DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA 467
+ D S+D E P + K + E S DG++ V S R G D
Sbjct: 213 HVLGTDQSEDILCAEFPDEPKWMGGAEL--------SDDGRY-VLLSIREG------CDP 257
Query: 468 VNGEFNGDIRQLTDG-----PWIDTMPSW-------SPKGDLIAFSSNRHNPDNVEAFSL 515
VN + D++Q ++G W+ + ++ + +G + F +NRH+P N ++
Sbjct: 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSP-NYRLINI 316
Query: 516 YVIKPDGSGLRRIHVAGPEGSGDV 539
P+ S + V PE DV
Sbjct: 317 DFTDPEESKWK---VLVPEHEKDV 337
>pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 39/204 (19%)
Query: 356 IKIAKSDGSKRWTLIKDRTAF-YNSWSPTEKHVIYTS----TGPIFQSERATVQIARVSF 410
IK K DG+K + +R F +W+ K + Y + G +E +T ++ +
Sbjct: 153 IKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYY 212
Query: 411 QL---DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA 467
+ D S+D E P + K + E S DG++ V S R G D
Sbjct: 213 HVLGTDQSEDILCAEFPDEPKWMGGAEL--------SDDGRY-VLLSIREG------CDP 257
Query: 468 VNGEFNGDIRQLTDG-----PWIDTMPSW-------SPKGDLIAFSSNRHNPDNVEAFSL 515
VN + D++Q ++G W+ + ++ + +G + F +NRH+P N ++
Sbjct: 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSP-NYRLINI 316
Query: 516 YVIKPDGSGLRRIHVAGPEGSGDV 539
P+ S + V PE DV
Sbjct: 317 DFTDPEESKWK---VLVPEHEKDV 337
>pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant
Length = 710
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 39/204 (19%)
Query: 356 IKIAKSDGSKRWTLIKDRTAF-YNSWSPTEKHVIYTS----TGPIFQSERATVQIARVSF 410
IK K DG+K + +R F +W+ K + Y + G +E +T ++ +
Sbjct: 153 IKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYY 212
Query: 411 QL---DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA 467
+ D S+D E P + K + E S DG++ V S R G D
Sbjct: 213 HVLGTDQSEDILCAEFPDEPKWMGGAEL--------SDDGRY-VLLSIREG------CDP 257
Query: 468 VNGEFNGDIRQLTDG-----PWIDTMPSW-------SPKGDLIAFSSNRHNPDNVEAFSL 515
VN + D++Q ++G W+ + ++ + +G + F +NRH+P N ++
Sbjct: 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSP-NYRLINI 316
Query: 516 YVIKPDGSGLRRIHVAGPEGSGDV 539
P+ S + V PE DV
Sbjct: 317 DFTDPEESKWK---VLVPEHEKDV 337
>pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
pdb|1H2Y|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
With Covalently Bound Inhibitor Z-Pro-Prolinal
Length = 710
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 39/204 (19%)
Query: 356 IKIAKSDGSKRWTLIKDRTAF-YNSWSPTEKHVIYTS----TGPIFQSERATVQIARVSF 410
IK K DG+K + +R F +W+ K + Y + G +E +T ++ +
Sbjct: 153 IKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYY 212
Query: 411 QL---DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA 467
+ D S+D E P + K + E S DG++ V S R G D
Sbjct: 213 HVLGTDQSEDILCAEFPDEPKWMGGAEL--------SDDGRY-VLLSIREG------CDP 257
Query: 468 VNGEFNGDIRQLTDG-----PWIDTMPSW-------SPKGDLIAFSSNRHNPDNVEAFSL 515
VN + D++Q ++G W+ + ++ + +G + F +NRH+P N ++
Sbjct: 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSP-NYRLINI 316
Query: 516 YVIKPDGSGLRRIHVAGPEGSGDV 539
P+ S + V PE DV
Sbjct: 317 DFTDPEESKWK---VLVPEHEKDV 337
>pdb|3OM6|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
pdb|3OM6|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
pdb|3OM6|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
pdb|3OM6|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
Length = 456
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 154 IAVASYESRPWPGEFHELN-TDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADD 212
+ + Y S G++ LN T +V+ + DPN + P GD+ + +
Sbjct: 356 VYMLGYVSNTLTGKYKPLNDTGLVLHMDLDPNDKTFTYSHFAVPQTKGDNVVITSYMTNR 415
Query: 213 GWW----SIFRVSFPENLEFLGFPIAPTRVTPPG 242
G++ S F SF N++ + RV G
Sbjct: 416 GFYEDNHSTFAPSFLVNIDGSKTSVVKDRVLEQG 449
>pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant
Length = 710
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 39/204 (19%)
Query: 356 IKIAKSDGSKRWTLIKDRTAF-YNSWSPTEKHVIYTS----TGPIFQSERATVQIARVSF 410
IK K DG+K + +R F +W+ K + Y + G +E +T ++ +
Sbjct: 153 IKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYY 212
Query: 411 QL---DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA 467
+ D S+D E P + K + E S DG++ V S R G D
Sbjct: 213 HVLGTDQSEDILCAEFPDEPKWMGGAEL--------SDDGRY-VLLSIREG------CDP 257
Query: 468 VNGEFNGDIRQLTDG-----PWIDTMPSW-------SPKGDLIAFSSNRHNPDNVEAFSL 515
VN + D++Q ++G W+ + ++ + +G + F +NRH+P N ++
Sbjct: 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSP-NYRLINI 316
Query: 516 YVIKPDGSGLRRIHVAGPEGSGDV 539
P+ S + V PE DV
Sbjct: 317 DFTDPEESKWK---VLVPEHEKDV 337
>pdb|3OM2|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
D257a
Length = 456
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 154 IAVASYESRPWPGEFHELN-TDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADD 212
+ + Y S G++ LN T +V+ + DPN + P GD+ + +
Sbjct: 356 VYMLGYVSNTLTGKYKPLNDTGLVLHMDLDPNDKTFTYSHFAVPQTKGDNVVITSYMTNR 415
Query: 213 GWW----SIFRVSFPENLEFLGFPIAPTRVTPPG 242
G++ S F SF N++ + RV G
Sbjct: 416 GFYEDNHSTFAPSFLVNIDGSKTSVVKDRVLEQG 449
>pdb|3OM5|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
pdb|3OM5|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
pdb|3OM5|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
pdb|3OM5|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
Length = 456
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 154 IAVASYESRPWPGEFHELN-TDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADD 212
+ + Y S G++ LN T +V+ + DPN + P GD+ + +
Sbjct: 356 VYMLGYVSNTLTGKYKPLNDTGLVLHMDLDPNDKTFTYSHFAVPQTKGDNVVITSYMTNR 415
Query: 213 GWW----SIFRVSFPENLEFLGFPIAPTRVTPPG 242
G++ S F SF N++ + RV G
Sbjct: 416 GFYEDNHSTFAPSFLVNIDGSKTSVVKDRVLEQG 449
>pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle
Length = 710
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 39/204 (19%)
Query: 356 IKIAKSDGSKRWTLIKDRTAF-YNSWSPTEKHVIYTS----TGPIFQSERATVQIARVSF 410
IK K DG+K + +R F +W+ K + Y + G +E +T ++ +
Sbjct: 153 IKFMKVDGAKELPDVLERVKFSXMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYY 212
Query: 411 QL---DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA 467
+ D S+D E P + K + E S DG++ V S R G D
Sbjct: 213 HVLGTDQSEDILCAEFPDEPKWMGGAE--------LSDDGRY-VLLSIREG------XDP 257
Query: 468 VNGEFNGDIRQLTDG-----PWIDTMPSW-------SPKGDLIAFSSNRHNPDNVEAFSL 515
VN + D++Q ++G W+ + ++ + +G + F +NRH+P N ++
Sbjct: 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSP-NYRLINI 316
Query: 516 YVIKPDGSGLRRIHVAGPEGSGDV 539
P+ S + V PE DV
Sbjct: 317 DFTDPEESKWK---VLVPEHEKDV 337
>pdb|3OM4|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
pdb|3OM4|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
pdb|3OM4|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
pdb|3OM4|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
Length = 456
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 154 IAVASYESRPWPGEFHELN-TDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADD 212
+ + Y S G++ LN T +V+ + DPN + P GD+ + +
Sbjct: 356 VYMLGYVSNTLTGKYKPLNDTGLVLHMDLDPNDKTFTYSHFAVPQTKGDNVVITSYMTNR 415
Query: 213 GWW----SIFRVSFPENLEFLGFPIAPTRVTPPG 242
G++ S F SF N++ + RV G
Sbjct: 416 GFYEDNHSTFAPSFLVNIDGSKTSVVKDRVLEQG 449
>pdb|3OM7|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
pdb|3OM7|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
pdb|3OM7|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
pdb|3OM7|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
Length = 456
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 154 IAVASYESRPWPGEFHELN-TDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADD 212
+ + Y S G++ LN T +V+ + DPN + P GD+ + +
Sbjct: 356 VYMLGYVSNTLTGKYKPLNDTGLVLHMDLDPNDKTFTYSHFAVPQTKGDNVVITSYMTNR 415
Query: 213 GWW----SIFRVSFPENLEFLGFPIAPTRVTPPG 242
G++ S F SF N++ + RV G
Sbjct: 416 GFYEDNHSTFAPSFLVNIDGSKTSVVKDRVLEQG 449
>pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t
Mutant
Length = 710
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 39/204 (19%)
Query: 356 IKIAKSDGSKRWTLIKDRTAF-YNSWSPTEKHVIYTS----TGPIFQSERATVQIARVSF 410
IK K DG+K + +R F +W+ K + Y + G +E +T ++ +
Sbjct: 153 IKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYY 212
Query: 411 QL---DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA 467
+ D S+D E P + K + E S DG++ V S R G D
Sbjct: 213 HVLGTDQSEDILCAEFPDEPKWMGGAEL--------SDDGRY-VLLSIREG------TDP 257
Query: 468 VNGEFNGDIRQLTDG-----PWIDTMPSW-------SPKGDLIAFSSNRHNPDNVEAFSL 515
VN + D++Q ++G W+ + ++ + +G + F +NRH+P N ++
Sbjct: 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSP-NYRLINI 316
Query: 516 YVIKPDGSGLRRIHVAGPEGSGDV 539
P+ S + V PE DV
Sbjct: 317 DFTDPEESKWK---VLVPEHEKDV 337
>pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant
Length = 710
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 39/204 (19%)
Query: 356 IKIAKSDGSKRWTLIKDRTAF-YNSWSPTEKHVIYTS----TGPIFQSERATVQIARVSF 410
IK K DG+K + +R F +W+ K + Y + G +E +T ++ +
Sbjct: 153 IKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYY 212
Query: 411 QL---DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA 467
+ D S+D E P + K + E S DG++ V S R G D
Sbjct: 213 HVLGTDQSEDILCAEFPDEPKWMGGAEL--------SDDGRY-VLLSIREG------TDP 257
Query: 468 VNGEFNGDIRQLTDG-----PWIDTMPSW-------SPKGDLIAFSSNRHNPDNVEAFSL 515
VN + D++Q ++G W+ + ++ + +G + F +NRH+P N ++
Sbjct: 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSP-NYRLINI 316
Query: 516 YVIKPDGSGLRRIHVAGPEGSGDV 539
P+ S + V PE DV
Sbjct: 317 DFTDPEESKWK---VLVPEHEKDV 337
>pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 39/204 (19%)
Query: 356 IKIAKSDGSKRWTLIKDRTAF-YNSWSPTEKHVIYTS----TGPIFQSERATVQIARVSF 410
IK K DG+K + +R F +W+ K + Y + G +E +T ++ +
Sbjct: 153 IKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYY 212
Query: 411 QL---DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA 467
+ D S+D E P + K + E S DG++ V S R G D
Sbjct: 213 HVLGTDQSEDILCVEFPDEPKWMGGAEL--------SDDGRY-VLLSIREG------CDP 257
Query: 468 VNGEFNGDIRQLTDG-----PWIDTMPSW-------SPKGDLIAFSSNRHNPDNVEAFSL 515
VN + D++Q ++G W+ + ++ + +G + F +NRH+P N ++
Sbjct: 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSP-NYRLINI 316
Query: 516 YVIKPDGSGLRRIHVAGPEGSGDV 539
P+ S + V PE DV
Sbjct: 317 DFTDPEESKWK---VLVPEHEKDV 337
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,432,950
Number of Sequences: 62578
Number of extensions: 1057620
Number of successful extensions: 2415
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2309
Number of HSP's gapped (non-prelim): 92
length of query: 642
length of database: 14,973,337
effective HSP length: 105
effective length of query: 537
effective length of database: 8,402,647
effective search space: 4512221439
effective search space used: 4512221439
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)