BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039497
(642 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8LHQ6|TOLB_DINSH Protein TolB OS=Dinoroseobacter shibae (strain DFL 12) GN=tolB PE=3
SV=1
Length = 446
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 78/169 (46%), Gaps = 31/169 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG+ +VF S RSG + L+V+ A GE R+++ GP P WSP+GDLIAF
Sbjct: 306 PSFSPDGRQIVFESDRSGSQQLYVMSATGGE----ARRISFGPGRYGTPVWSPRGDLIAF 361
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+ N F + V++ DGS R + S +D +S +G ++FT
Sbjct: 362 TKQ-----NQGRFHIGVMRTDGSEERLLT------SSFLD----ESPTWSPNGRVIMFTR 406
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
P LY V + G LRR+ G + PAW P
Sbjct: 407 ETSGAGGAP-----------SLYSVDISGRNLRRVPTPGAAS-DPAWSP 443
Score = 52.8 bits (125), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 80/187 (42%), Gaps = 34/187 (18%)
Query: 430 LTKEETGNNAF-PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTM 488
L + G +F P SPDG+ +VF G+ +++ D +G +LT P I+T
Sbjct: 250 LGSAQGGEMSFAPRFSPDGRSVVFSLTNGGNSDIYRRDLSSGAQT----RLTATPAIETA 305
Query: 489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVC 548
PS+SP G I F S+R LYV+ G RRI GP R
Sbjct: 306 PSFSPDGRQIVFESDRSGSQQ-----LYVMSATGGEARRISF-GP--------GRYGTPV 351
Query: 549 FSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWH 608
+S G+ + FT Q Q + V++ DGS R LT + + + +P W
Sbjct: 352 WSPRGDLIAFT--------------KQNQGRFHIGVMRTDGSEERLLT-SSFLDESPTWS 396
Query: 609 PGNQLDL 615
P ++ +
Sbjct: 397 PNGRVIM 403
>sp|Q145B2|TOLB_BURXL Protein TolB OS=Burkholderia xenovorans (strain LB400) GN=tolB PE=3
SV=1
Length = 430
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 111/287 (38%), Gaps = 70/287 (24%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG + + +WSP V Y S F+ ++ V I
Sbjct: 178 LQISDSDGQDAHIALSSPEPIISPAWSPDGTKVAYVS----FEKKKPIVYI--------- 224
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++P +I+ ++ GNN+ P+ SPDG+ L R+G+ +F AVN + +G
Sbjct: 225 ------HDLPTGRRIVVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIF---AVNADGSG 275
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY------------------ 516
+R+LT G IDT P +SP G I F+S+R + S
Sbjct: 276 -LRRLTQGSSIDTEPCFSPDGQSIYFTSDRGGQPQIYKMSAQGENAGAAQRVTFTGSYNT 334
Query: 517 --VIKPDGSGLRRIH------------VAGPEGSGDVDRERINHVCFSADGEWLLFTANL 562
+ PDG L I + G +G D F+A+G+++L+
Sbjct: 335 SPRVSPDGKQLAYISRVGGGFKLYIQDLQGNTATGLTDTTHDESPSFAANGQYILYA--- 391
Query: 563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
Q G L V DG + L+ G P+W P
Sbjct: 392 -----------TQVNGRGVLAAVSTDGRTRQVLSVQGGSVREPSWGP 427
Score = 32.7 bits (73), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 71/186 (38%), Gaps = 24/186 (12%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYT 390
N S P++SPDG + N I +DGS L + + + IY
Sbjct: 241 NNSAPAWSPDGRTLAVALSRTGNTQIFAVNADGSGLRRLTQGSSIDTEPCFSPDGQSIY- 299
Query: 391 STGPIFQSERATV-QIARVSFQLDPSDDNNREEIPCDVKILTKEETGN-NAFPSCSPDGK 448
F S+R QI ++S Q + + R TG+ N P SPDGK
Sbjct: 300 -----FTSDRGGQPQIYKMSAQGENAGAAQRVTF-----------TGSYNTSPRVSPDGK 343
Query: 449 FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD 508
L + S G L++ D G LTD D PS++ G I +++ +
Sbjct: 344 QLAYISRVGGGFKLYIQDLQGNTATG----LTDTTH-DESPSFAANGQYILYATQVNGRG 398
Query: 509 NVEAFS 514
+ A S
Sbjct: 399 VLAAVS 404
>sp|B2T077|TOLB_BURPP Protein TolB OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN)
GN=tolB PE=3 SV=1
Length = 430
Score = 69.7 bits (169), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 111/287 (38%), Gaps = 70/287 (24%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++I+ SDG + + +WSP V Y S F+ ++ V I
Sbjct: 178 LQISDSDGQDAHIALSSPEPIISPAWSPDGTKVAYVS----FEKKKPIVYI--------- 224
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++P +++ ++ GNN+ P+ SPDG+ L R+G+ +F AVN + +G
Sbjct: 225 ------HDLPTGRRVVVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIF---AVNADGSG 275
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY------------------ 516
+R+LT G IDT P +SP G I F+S+R + S
Sbjct: 276 -LRRLTQGSSIDTEPCFSPDGQSIYFTSDRGGQPQIYKMSAQGENAGAAQRVTFTGSYNT 334
Query: 517 --VIKPDGSGLRRIH------------VAGPEGSGDVDRERINHVCFSADGEWLLFTANL 562
+ PDG L I + G +G D F+A+G+++L+
Sbjct: 335 SPRVSPDGKQLAYISRVGGGFKLYIQDLQGNTATGLTDTTHDESPSFAANGQYILYA--- 391
Query: 563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
Q G L V DG + L+ G P+W P
Sbjct: 392 -----------TQVNGRGVLAAVSTDGRTRQVLSVQGGSVREPSWGP 427
Score = 32.7 bits (73), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 71/186 (38%), Gaps = 24/186 (12%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYT 390
N S P++SPDG + N I +DGS L + + + IY
Sbjct: 241 NNSAPAWSPDGRTLAVALSRTGNTQIFAVNADGSGLRRLTQGSSIDTEPCFSPDGQSIY- 299
Query: 391 STGPIFQSERATV-QIARVSFQLDPSDDNNREEIPCDVKILTKEETGN-NAFPSCSPDGK 448
F S+R QI ++S Q + + R TG+ N P SPDGK
Sbjct: 300 -----FTSDRGGQPQIYKMSAQGENAGAAQRVTF-----------TGSYNTSPRVSPDGK 343
Query: 449 FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD 508
L + S G L++ D G LTD D PS++ G I +++ +
Sbjct: 344 QLAYISRVGGGFKLYIQDLQGNTATG----LTDTTH-DESPSFAANGQYILYATQVNGRG 398
Query: 509 NVEAFS 514
+ A S
Sbjct: 399 VLAAVS 404
>sp|Q3APB5|TOLB_CHLCH Protein TolB OS=Chlorobium chlorochromatii (strain CaD3) GN=tolB
PE=3 SV=1
Length = 440
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 95/222 (42%), Gaps = 47/222 (21%)
Query: 402 TVQIARVSFQLDPSDDNNRE----------------EIPCDVKILTKEETGNNAFPSCSP 445
T ++A+ +DP+ N+RE + VK +G + P+ SP
Sbjct: 245 TTRVAKKGNSIDPAWRNSRELATTFSFEGDQELYLLDSAGAVKQRLTSSSGIDLSPTFSP 304
Query: 446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH 505
DG+ + F S RSG+ +FV D +G+ ++LT +T P+WSP GD IAFS+
Sbjct: 305 DGRKMAFVSARSGNPQIFVYDFSSGK----SQRLTFSGRYNTQPAWSPIGDKIAFSTWES 360
Query: 506 NPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV 565
+ +++VI DGSGL ++ E +S DG ++F +N
Sbjct: 361 GGE----INIFVINTDGSGLTQLTTQSGEN---------ESPSWSPDGRMIVFASNR--- 404
Query: 566 MAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
Q LYV+ DG R L G E P+W
Sbjct: 405 -----------QGVKKLYVMMADGKNQRPLLAIGGEQTQPSW 435
Score = 41.2 bits (95), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 37/159 (23%)
Query: 458 GHKNLFVLDAVNGEFNGDIRQ-LTDGPWIDTMPSWSPKGDLIAFSSNRH-NPDNVEAFSL 515
G + L++LD+ G ++Q LT ID P++SP G +AF S R NP +
Sbjct: 273 GDQELYLLDSA-----GAVKQRLTSSSGIDLSPTFSPDGRKMAFVSARSGNPQ------I 321
Query: 516 YVIKPDGSGLRRIHVAGPEGSGDVDRERIN-HVCFSADGEWLLFTANLGAVMAEPVSWPN 574
+V +R+ +G R N +S G+ + F+ +W +
Sbjct: 322 FVYDFSSGKSQRLTFSG----------RYNTQPAWSPIGDKIAFS-----------TWES 360
Query: 575 QFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+ +++V+ DGSGL +LT EN +P+W P ++
Sbjct: 361 GGEI--NIFVINTDGSGLTQLTTQSGENESPSWSPDGRM 397
Score = 40.0 bits (92), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 66/161 (40%), Gaps = 27/161 (16%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAK-SDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTG 393
P+FSPDG + F N I + S G + R +WSP + +++
Sbjct: 300 PTFSPDGRKMAFVSARSGNPQIFVYDFSSGKSQRLTFSGRYNTQPAWSPIGDKIAFST-- 357
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK--EETGNNAFPSCSPDGKFLV 451
+ + N I D LT+ ++G N PS SPDG+ +V
Sbjct: 358 ------------------WESGGEINIFVINTDGSGLTQLTTQSGENESPSWSPDGRMIV 399
Query: 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
F S R G K L+V+ A +G+ + R L T PSWS
Sbjct: 400 FASNRQGVKKLYVMMA-DGK---NQRPLLAIGGEQTQPSWS 436
Score = 36.6 bits (83), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 70/186 (37%), Gaps = 36/186 (19%)
Query: 447 GKFLVFRSGRSGHKNLFVLDAVNGEFNG-DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH 505
G +VF S +SG K ++ D F+G ++ QLT+ I P+ SP G +AF+
Sbjct: 176 GSQIVFISNKSGSKEIYSCD-----FDGANVHQLTNFRSIALTPALSPDGAYLAFT---- 226
Query: 506 NPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGD----VDRERINHVCFSADGEWLLFTAN 561
D I+ +G + VA S D RE F D E L +
Sbjct: 227 --DFTGGKPALAIRELATG-KTTRVAKKGNSIDPAWRNSRELATTFSFEGDQELYLLDSA 283
Query: 562 LGAVMAEPVSWPN-----QFQPYG-------------DLYVVKLDGSGLRRLTWNGYENG 603
GAV S F P G ++V +RLT++G N
Sbjct: 284 -GAVKQRLTSSSGIDLSPTFSPDGRKMAFVSARSGNPQIFVYDFSSGKSQRLTFSGRYNT 342
Query: 604 TPAWHP 609
PAW P
Sbjct: 343 QPAWSP 348
>sp|Q39PS9|TOLB_GEOMG Protein TolB OS=Geobacter metallireducens (strain GS-15 / ATCC
53774 / DSM 7210) GN=tolB PE=3 SV=1
Length = 429
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 119/304 (39%), Gaps = 74/304 (24%)
Query: 339 PDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTS----TG 393
P G I F I + DG L K+R+ N +SP+ K +I+TS
Sbjct: 165 PFTGKIAFVSTRAGAKAIFLMDYDGHNVQQLTKNRSINLNPDFSPSGKEIIFTSYRQGNP 224
Query: 394 PIFQSERATVQIARVS-----------------FQLDPSDDNNREEIPCDVKILTKEETG 436
+F+ E T AR+S L S D N E I T G
Sbjct: 225 DLFRRELFTGAEARISSYRGINATGAWSPDGKTIALTLSKDGNSE-------IYTISRDG 277
Query: 437 NN-----------AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWI 485
N P+ SPD + +VF S R G +F+++A +G +R+LT
Sbjct: 278 KNPHRLTNTSAIEVSPAWSPDVRKIVFVSDRLGKPQIFIMNA-DGT---GVRRLTTSGNY 333
Query: 486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERIN 545
+ P WSPKGD I +S F +Y I PDG+ R+ EGS +
Sbjct: 334 NVSPRWSPKGDRIVYSRQEG------GFQIYAINPDGTNDTRLT---SEGSNE------- 377
Query: 546 HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTP 605
H +S DG ++ F++ G +YV++ DGSG R++ + P
Sbjct: 378 HPRWSPDGRFITFSSTRGGGEG--------------IYVMRADGSGQTRVSGGKGRDSHP 423
Query: 606 AWHP 609
W P
Sbjct: 424 TWSP 427
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 30/163 (18%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN---SWSPTEKHVIYTS 391
P++SPD IVF D I I +DG+ L + YN WSP ++Y+
Sbjct: 293 PAWSPDVRKIVFVSDRLGKPQIFIMNADGTGVRRLTT--SGNYNVSPRWSPKGDRIVYSR 350
Query: 392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451
FQ + ++P N+ LT E G+N P SPDG+F+
Sbjct: 351 QEGGFQI-----------YAINPDGTNDTR--------LTSE--GSNEHPRWSPDGRFIT 389
Query: 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494
F S R G + ++V+ A + +G R ++ G D+ P+WSP+
Sbjct: 390 FSSTRGGGEGIYVMRA---DGSGQTR-VSGGKGRDSHPTWSPR 428
>sp|Q3B584|TOLB_PELLD Protein TolB OS=Pelodictyon luteolum (strain DSM 273) GN=tolB PE=3
SV=2
Length = 436
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 78/167 (46%), Gaps = 31/167 (18%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG + F S R G+ +F+LD G+ R+LT +T PSWSP GD IA+
Sbjct: 297 PSFSPDGTKMAFVSARFGNPQVFILDLGTGQ----TRRLTYNGNYNTQPSWSPGGDKIAY 352
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
++ N + +++ I+PDGSG R+ SG + E +S G+ ++FT+
Sbjct: 353 TTMEKNGE----INIFTIRPDGSGATRLT------SGARENE---SPSWSPGGDMIVFTS 399
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
Q LYV+ +G RRL E P+W
Sbjct: 400 GR--------------QGQKKLYVMNANGDNQRRLLQMEGEQMQPSW 432
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 82/195 (42%), Gaps = 33/195 (16%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDG L F SG L +++ + + +RQ G ID P W G++
Sbjct: 211 PALSPDGTRLAFTDYTSGRPGLKIMNMADRRISA-VRQ--SGVSID--PGWRSNGEVATT 265
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSAD-GEWLLF 558
S + D +Y+++PDG+ R++ + G + S + SA G +F
Sbjct: 266 LSFEGDQD------IYLVRPDGTLSRKVTSSRGIDLSPSFSPDGTKMAFVSARFGNPQVF 319
Query: 559 TANLGAVMAEPVSWPNQF------QPYGD--------------LYVVKLDGSGLRRLTWN 598
+LG +++ + P GD ++ ++ DGSG RLT
Sbjct: 320 ILDLGTGQTRRLTYNGNYNTQPSWSPGGDKIAYTTMEKNGEINIFTIRPDGSGATRLTSG 379
Query: 599 GYENGTPAWHPGNQL 613
EN +P+W PG +
Sbjct: 380 ARENESPSWSPGGDM 394
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 94/255 (36%), Gaps = 38/255 (14%)
Query: 246 FTPAAFHDGKRLAVATRRKNR-NFRHIEIYDLTLNPNFHH---YNPFVSANSEFIGYHRF 301
TPA DG RLA R + + + D ++ +P +N E F
Sbjct: 209 LTPALSPDGTRLAFTDYTSGRPGLKIMNMADRRISAVRQSGVSIDPGWRSNGEVATTLSF 268
Query: 302 RGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAK- 360
EG I + P + +++ R PSFSPDG + F N + I
Sbjct: 269 -----EGDQDIYLVRPDGTLSRKVTSSRGIDLSPSFSPDGTKMAFVSARFGNPQVFILDL 323
Query: 361 SDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR 420
G R SWSP + YT+ ++ + + N
Sbjct: 324 GTGQTRRLTYNGNYNTQPSWSPGGDKIAYTT--------------------MEKNGEINI 363
Query: 421 EEIPCDVKILTKEETG--NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGD-IR 477
I D T+ +G N PS SP G +VF SGR G K L+V++A NGD R
Sbjct: 364 FTIRPDGSGATRLTSGARENESPSWSPGGDMIVFTSGRQGQKKLYVMNA-----NGDNQR 418
Query: 478 QLTDGPWIDTMPSWS 492
+L PSWS
Sbjct: 419 RLLQMEGEQMQPSWS 433
>sp|B2JGA0|TOLB_BURP8 Protein TolB OS=Burkholderia phymatum (strain DSM 17167 / STM815)
GN=tolB PE=3 SV=1
Length = 430
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/350 (24%), Positives = 134/350 (38%), Gaps = 78/350 (22%)
Query: 300 RFRGESTEGQSTIPHLEPVASPVKELRMLRLNGS---FPSFSPDGGLIVFNHDFELNAG- 355
RF+ T Q ++ LE V SP LRM + + G+ + + G
Sbjct: 116 RFKLYDTVNQQSLGGLELV-SPEGGLRMSAHKVADYIYAKLMGGRGVFATRLSYVIKTGN 174
Query: 356 ---IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411
++I+ SDG + + +WSP V Y S F+ ++ V I
Sbjct: 175 RYQLQISDSDGQDAHIALSSPEPIISPAWSPDGTKVAYVS----FEKKKPIVYI------ 224
Query: 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471
++P +++ ++ GNN+ P+ SPDG+ L R+G+ +F AVN +
Sbjct: 225 ---------HDLPTGRRVVVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIF---AVNAD 272
Query: 472 FNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHN-------PDNVEAFSLYV------- 517
+G +R+LT G IDT PS+SP G I F+S+R P + EA
Sbjct: 273 GSG-LRRLTQGSSIDTEPSYSPDGQSIYFTSDRGGQPQIYKMPASGEASGGAQRVTFTGN 331
Query: 518 ------IKPDGSGLRRIHVAGPE------------GSGDVDRERINHVCFSADGEWLLFT 559
+ PDG L I G + D F+A+G+++L+
Sbjct: 332 YNTSPRVSPDGKQLAYISRTGGGFKLYIQDLQSGVATALTDTTHDESPSFAANGQYILYA 391
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
Q G L V DG + L+ G P+W P
Sbjct: 392 --------------TQVNGRGVLAAVSTDGRTRQVLSVQGGSVREPSWGP 427
>sp|Q74H67|TOLB_GEOSL Protein TolB OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM
12127 / PCA) GN=tolB PE=3 SV=1
Length = 432
Score = 66.2 bits (160), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 114/298 (38%), Gaps = 62/298 (20%)
Query: 339 PDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTS------ 391
P G I F N I + DG L K+R+ N +SP + + YTS
Sbjct: 168 PFTGKIAFVSTESGNKEIYLMDYDGHNVQRLTKNRSINLNPDFSPNGRELAYTSYRRGNP 227
Query: 392 ---TGPIFQSERATVQIAR------------VSFQLDPSDDNNREEIPC-----DVKILT 431
IF A V R L S D N E D + LT
Sbjct: 228 DLFRREIFTGTEAVVSSHRGINVTGTWSPDGKQLALAMSRDGNSEIYAISRDGRDPRRLT 287
Query: 432 KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491
+ + P+ SPDGK + F S R G +F+++A D+R+LT + P W
Sbjct: 288 THQ-AIDVSPAWSPDGKRIAFVSDRLGKPQVFIMNADGS----DVRRLTTSGAYNVSPRW 342
Query: 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSA 551
SPKGD + + F +Y I DG+G R+ EGS + H +S
Sbjct: 343 SPKGDRLVYCRQEG------GFQIYSIATDGTGDTRLT---SEGSNE-------HPRWSP 386
Query: 552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
DG +L F++ A +YV++ DGSG R+ + + P W P
Sbjct: 387 DGRFLTFSSTRDGGEA--------------IYVMRSDGSGQTRVYRSKGKASHPTWSP 430
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 95/246 (38%), Gaps = 31/246 (12%)
Query: 253 DGKRLAVAT-RRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQST 311
+G+ LA + RR N + EI+ T H V+ G S +G S
Sbjct: 213 NGRELAYTSYRRGNPDLFRREIFTGTEAVVSSHRGINVTGTWSPDGKQLALAMSRDGNSE 272
Query: 312 IPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK 371
I + + L + P++SPDG I F D + I +DGS L
Sbjct: 273 IYAISRDGRDPRRLTTHQAIDVSPAWSPDGKRIAFVSDRLGKPQVFIMNADGSDVRRLTT 332
Query: 372 DRTAFYN---SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK 428
+ YN WSP ++Y FQ S D + D
Sbjct: 333 --SGAYNVSPRWSPKGDRLVYCRQEGGFQI---------YSIATDGTGDTR--------- 372
Query: 429 ILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTM 488
LT E G+N P SPDG+FL F S R G + ++V+ + + +G R + +
Sbjct: 373 -LTSE--GSNEHPRWSPDGRFLTFSSTRDGGEAIYVMRS---DGSGQTR-VYRSKGKASH 425
Query: 489 PSWSPK 494
P+WSP+
Sbjct: 426 PTWSPR 431
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 112/292 (38%), Gaps = 44/292 (15%)
Query: 102 KLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYES 161
K+ F+S +I Y D RLT ++ +P S +G+ +A SY
Sbjct: 172 KIAFVSTESGNKEI-------YLMDYDGHNVQRLTKNRSINLNPDFSPNGRELAYTSYR- 223
Query: 162 RPWPGEFHELNTDIVVFQESDPNKRVIVCERG--GWPTWSGDSTIYFHRQADDGWWSIFR 219
R P F +I E+ V+ RG TWS D + DG I+
Sbjct: 224 RGNPDLFRR---EIFTGTEA-----VVSSHRGINVTGTWSPDGKQLALAMSRDGNSEIYA 275
Query: 220 VSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNR------NFRHIEI 273
+S P R+T +PA DGKR+A + R + N ++
Sbjct: 276 ISRDGR--------DPRRLTTHQAIDVSPAWSPDGKRIAFVSDRLGKPQVFIMNADGSDV 327
Query: 274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGS 333
LT + ++ +P S + + Y R G + +A+ L GS
Sbjct: 328 RRLTTS-GAYNVSPRWSPKGDRLVYCRQEGGF--------QIYSIATDGTGDTRLTSEGS 378
Query: 334 --FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDR-TAFYNSWSP 382
P +SPDG + F+ + I + +SDGS + + + + A + +WSP
Sbjct: 379 NEHPRWSPDGRFLTFSSTRDGGEAIYVMRSDGSGQTRVYRSKGKASHPTWSP 430
>sp|Q83F59|TOLB_COXBU Protein TolB OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase
I) GN=tolB PE=1 SV=1
Length = 437
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 90/205 (43%), Gaps = 27/205 (13%)
Query: 314 HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG---IKIAKSDG-SKRWTL 369
L +A + +L +L G FS ++ E A +++A +DG + + L
Sbjct: 142 ELRNLAHHISDLIYQKLTGVRGVFSTKIAYVLVQASSENTAAKYTLEVADADGFNPQPLL 201
Query: 370 IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI 429
+ D +WSP + Y S F+ RA + + +++ +
Sbjct: 202 VSDMPIMSPTWSPDGNKIAYVS----FEGHRAAIYL---------------QDLATGRRQ 242
Query: 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489
E G N P+ SPDGK L ++G+ +++L+ +G +R++T G IDT P
Sbjct: 243 RLSEAPGINGAPAFSPDGKQLALVLTKTGNPKIYILNLADGH----LREITKGWSIDTEP 298
Query: 490 SWSPKGDLIAFSSNRHNPDNVEAFS 514
+WSP G + F+SNR + +S
Sbjct: 299 AWSPDGKSLLFTSNRDGTPQIYNYS 323
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 58/203 (28%)
Query: 330 LNGSFPSFSPDGGLIVFNHDFELNAGIKIAK-SDG-----SKRWTLIKDRTAFYNSWSPT 383
+NG+ P+FSPDG + N I I +DG +K W++ + +WSP
Sbjct: 250 INGA-PAFSPDGKQLALVLTKTGNPKIYILNLADGHLREITKGWSIDTEP-----AWSPD 303
Query: 384 EKHVIYTS----TGPIFQSERATVQIARVSFQLD----PS------------DDNN---- 419
K +++TS T I+ A I RV+++ D PS +N
Sbjct: 304 GKSLLFTSNRDGTPQIYNYSFADGSINRVTYRGDYNARPSFMPDGKSIIMMHRENGLFGI 363
Query: 420 -REEIPC-DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF----- 472
R+++ V+IL+ E+G + PS +P+GK ++ + G + + +++G+
Sbjct: 364 ARQDLSTGQVQILS--ESGTDESPSLAPNGKMAIY-AMEYGGRGVLAQVSIDGQIKLRLP 420
Query: 473 --NGDIRQLTDGPWIDTMPSWSP 493
NG++++ P+WSP
Sbjct: 421 ARNGNVQE----------PAWSP 433
>sp|Q20X63|TOLB_RHOPB Protein TolB OS=Rhodopseudomonas palustris (strain BisB18) GN=tolB
PE=3 SV=2
Length = 447
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 81/173 (46%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NLFV+D + +LTD P IDT PS++P G I F
Sbjct: 264 PRFSPDGQRVIMSLQQGGNSNLFVMDLRSKSTT----RLTDTPAIDTSPSYAPDGSKICF 319
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ G G +RI EGS + +S G+++ FT
Sbjct: 320 ESDRGGKPQI-----YVMPAGGGGAQRISFG--EGS-------YSTPVWSPRGDYIAFTK 365
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + ++K DGSG R LT +GY N P + P ++
Sbjct: 366 QGGG----------QF----SIGIMKPDGSGERLLT-SGYHNEGPTFAPNGRV 403
Score = 32.7 bits (73), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Query: 39 LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA 98
LT G + +F Q I ++ G PR+Y + + E++ + P F R +
Sbjct: 210 LTRGADLVLTPRFSP-STQEITYMEFGQGDPRVYLFNIETGQREIVGNFPGMSFSPR-FS 267
Query: 99 RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVAS 158
+ + +S + + S L+ DL++ TRLT +D SPS + G I S
Sbjct: 268 PDGQRVIMSLQQGGN------SNLFVMDLRSKSTTRLTDTPAIDTSPSYAPDGSKICFES 321
>sp|Q1D0D0|TOLB_MYXXD Protein TolB OS=Myxococcus xanthus (strain DK 1622) GN=tolB PE=3
SV=1
Length = 431
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 108/278 (38%), Gaps = 53/278 (19%)
Query: 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTG 393
P+ S DG + F + I + G + + + A ++SP K + Y+
Sbjct: 200 LPALSQDGSQVAFTTYRKNRPDIYVQSPGGEAKAVISGGQMATGAAFSPDGKRIAYS--- 256
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453
+ + E A V +A + LT G N P+ SPDGK + F
Sbjct: 257 -LAEGESAQVYVANAD--------------GSGARALTDTPYGLNTSPTWSPDGKRIAFV 301
Query: 454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF 513
S R G ++++ N + G +R+LT + P WSP+GDLI F++ D AF
Sbjct: 302 SNRGGSPQVYIM---NADGTG-VRRLTFQGNYNQTPDWSPRGDLIVFTAR----DERNAF 353
Query: 514 SLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA--NLGAVMAEPVS 571
L+ + + + R+ D+ FS +G ++FT+ N G+
Sbjct: 354 DLFTVSVETGKVTRLT---------QDQGSNEEPAFSPNGRLIVFTSTRNGGS------- 397
Query: 572 WPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
LYV+ DG+ L TP W P
Sbjct: 398 ---------QLYVMTADGNNQLPLRTEKGTYQTPDWSP 426
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 80/188 (42%), Gaps = 34/188 (18%)
Query: 426 DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWI 485
+ + LTK G N P+ S DG + F + R +++V G+ + + G +
Sbjct: 188 NARALTK--GGINILPALSQDGSQVAFTTYRKNRPDIYVQSP-----GGEAKAVISGGQM 240
Query: 486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERIN 545
T ++SP G IA+S E+ +YV DGSG R + D
Sbjct: 241 ATGAAFSPDGKRIAYSLAEG-----ESAQVYVANADGSGARALT--------DTPYGLNT 287
Query: 546 HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTP 605
+S DG+ + F +N G P +Y++ DG+G+RRLT+ G N TP
Sbjct: 288 SPTWSPDGKRIAFVSNRGG---SP-----------QVYIMNADGTGVRRLTFQGNYNQTP 333
Query: 606 AWHPGNQL 613
W P L
Sbjct: 334 DWSPRGDL 341
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 34/172 (19%)
Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW-IDTMPSWSPKGDLIAFSS 502
SPDGK + + ++V N + +G R LTD P+ ++T P+WSP G IAF S
Sbjct: 247 SPDGKRIAYSLAEGESAQVYV---ANADGSG-ARALTDTPYGLNTSPTWSPDGKRIAFVS 302
Query: 503 NRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVC-FSADGEWLLFTAN 561
NR V Y++ DG+G+RR+ G N +S G+ ++FTA
Sbjct: 303 NRGGSPQV-----YIMNADGTGVRRLTFQG----------NYNQTPDWSPRGDLIVFTAR 347
Query: 562 LGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
N F DL+ V ++ + RLT + N PA+ P +L
Sbjct: 348 ---------DERNAF----DLFTVSVETGKVTRLTQDQGSNEEPAFSPNGRL 386
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 114/265 (43%), Gaps = 39/265 (14%)
Query: 238 VTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI----YDLTLNPNFHHYNPFVSANS 293
+T G++ PA DG ++A T RKNR +++ ++ S +
Sbjct: 192 LTKGGINIL-PALSQDGSQVAFTTYRKNRPDIYVQSPGGEAKAVISGGQMATGAAFSPDG 250
Query: 294 EFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN 353
+ I Y GES Q + + + + LN S P++SPDG I F + +
Sbjct: 251 KRIAYSLAEGESA--QVYVANADGSGARALTDTPYGLNTS-PTWSPDGKRIAFVSNRGGS 307
Query: 354 AGIKIAKSDGS--KRWTLIKDRTAFYNS---WSPTEKHVIYTSTGPIFQSERATVQIARV 408
+ I +DG+ +R T + YN WSP +++T+ + ER + V
Sbjct: 308 PQVYIMNADGTGVRRLTFQGN----YNQTPDWSPRGDLIVFTA-----RDERNAFDLFTV 358
Query: 409 SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV 468
S + V LT+++ G+N P+ SP+G+ +VF S R+G L+V+ A
Sbjct: 359 SVET------------GKVTRLTQDQ-GSNEEPAFSPNGRLIVFTSTRNGGSQLYVMTA- 404
Query: 469 NGEFNGDIRQLTDGPWIDTMPSWSP 493
+ N + T+ T P WSP
Sbjct: 405 --DGNNQLPLRTEKGTYQT-PDWSP 426
>sp|Q84FF7|TOLB_MYXXA Protein TolB OS=Myxococcus xanthus GN=tolB PE=3 SV=1
Length = 431
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 108/278 (38%), Gaps = 53/278 (19%)
Query: 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTG 393
P+ S DG + F + I + G + + + A ++SP K + Y+
Sbjct: 200 LPALSQDGSQVAFTTYRKNRPDIYVQSPGGEAKAVISGGQMATGAAFSPDGKRIAYS--- 256
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453
+ + E A V +A + LT G N P+ SPDGK + F
Sbjct: 257 -LAEGESAQVYVANAD--------------GSGARALTDTPYGLNTSPTWSPDGKRIAFV 301
Query: 454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF 513
S R G ++++ N + G +R+LT + P WSP+GDLI F++ D AF
Sbjct: 302 SNRGGSPQVYIM---NADGTG-VRRLTFQGNYNQTPDWSPRGDLIVFTAR----DERNAF 353
Query: 514 SLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA--NLGAVMAEPVS 571
L+ + + + R+ D+ FS +G ++FT+ N G+
Sbjct: 354 DLFTVSVETGKVTRLT---------QDQGSNEEPAFSPNGRLIVFTSTRNGGS------- 397
Query: 572 WPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
LYV+ DG+ L TP W P
Sbjct: 398 ---------QLYVMTADGNNQLPLRTEKGTYQTPDWSP 426
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 80/188 (42%), Gaps = 34/188 (18%)
Query: 426 DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWI 485
+ + LTK G N P+ S DG + F + R +++V G+ + + G +
Sbjct: 188 NARALTK--GGINILPALSQDGSQVAFTTYRKNRPDIYVQSP-----GGEAKAVISGGQM 240
Query: 486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERIN 545
T ++SP G IA+S E+ +YV DGSG R + D
Sbjct: 241 ATGAAFSPDGKRIAYSLAEG-----ESAQVYVANADGSGARALT--------DTPYGLNT 287
Query: 546 HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTP 605
+S DG+ + F +N G P +Y++ DG+G+RRLT+ G N TP
Sbjct: 288 SPTWSPDGKRIAFVSNRGG---SP-----------QVYIMNADGTGVRRLTFQGNYNQTP 333
Query: 606 AWHPGNQL 613
W P L
Sbjct: 334 DWSPRGDL 341
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 34/172 (19%)
Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW-IDTMPSWSPKGDLIAFSS 502
SPDGK + + ++V N + +G R LTD P+ ++T P+WSP G IAF S
Sbjct: 247 SPDGKRIAYSLAEGESAQVYV---ANADGSG-ARALTDTPYGLNTSPTWSPDGKRIAFVS 302
Query: 503 NRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVC-FSADGEWLLFTAN 561
NR V Y++ DG+G+RR+ G N +S G+ ++FTA
Sbjct: 303 NRGGSPQV-----YIMNADGTGVRRLTFQG----------NYNQTPDWSPRGDLIVFTAR 347
Query: 562 LGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
N F DL+ V ++ + RLT + N PA+ P +L
Sbjct: 348 ---------DERNAF----DLFTVSVETGKVTRLTQDQGSNEEPAFSPNGRL 386
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 114/265 (43%), Gaps = 39/265 (14%)
Query: 238 VTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI----YDLTLNPNFHHYNPFVSANS 293
+T G++ PA DG ++A T RKNR +++ ++ S +
Sbjct: 192 LTKGGINIL-PALSQDGSQVAFTTYRKNRPDIYVQSPGGEAKAVISGGQMATGAAFSPDG 250
Query: 294 EFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN 353
+ I Y GES Q + + + + LN S P++SPDG I F + +
Sbjct: 251 KRIAYSLAEGESA--QVYVANADGSGARALTDTPYGLNTS-PTWSPDGKRIAFVSNRGGS 307
Query: 354 AGIKIAKSDGS--KRWTLIKDRTAFYNS---WSPTEKHVIYTSTGPIFQSERATVQIARV 408
+ I +DG+ +R T + YN WSP +++T+ + ER + V
Sbjct: 308 PQVYIMNADGTGVRRLTFQGN----YNQTPDWSPRGDLIVFTA-----RDERNAFDLFTV 358
Query: 409 SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV 468
S + V LT+++ G+N P+ SP+G+ +VF S R+G L+V+ A
Sbjct: 359 SVET------------GKVTRLTQDQ-GSNEEPAFSPNGRLIVFTSTRNGGSQLYVMTA- 404
Query: 469 NGEFNGDIRQLTDGPWIDTMPSWSP 493
+ N + T+ T P WSP
Sbjct: 405 --DGNNQLPLRTEKGTYQT-PDWSP 426
>sp|Q3SP21|TOLB_NITWN Protein TolB OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC
25391) GN=tolB PE=3 SV=1
Length = 450
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 81/173 (46%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P +PDG+ ++ + G+ NLFV+D + +LTD P IDT PS+SP G I F
Sbjct: 267 PRFAPDGQRIIMSLQQGGNSNLFVMDLRSKSTT----RLTDTPAIDTSPSYSPDGARICF 322
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ G G +RI EGS + +S G+++ FT
Sbjct: 323 ESDRGGKPQI-----YVMGATGGGAQRISFG--EGS-------YSTPVWSPRGDYIAFTK 368
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + ++K DGSG R LT +G+ N P + P ++
Sbjct: 369 QGGG----------QF----SIGIIKPDGSGERILT-SGFHNEGPTFAPNGRV 406
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Query: 39 LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA 98
LT G + +F Q + ++ G PR+Y + + E++ + P F R A
Sbjct: 213 LTRGADLVITPRFSP-STQEVTYMEFGQGDPRVYLFNIETGQREIVGNFPGMSFSPR-FA 270
Query: 99 RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVAS 158
+ + +S + + S L+ DL++ TRLT +D SPS S G I S
Sbjct: 271 PDGQRIIMSLQQGGN------SNLFVMDLRSKSTTRLTDTPAIDTSPSYSPDGARICFES 324
>sp|Q2SCL8|TOLB_HAHCH Protein TolB OS=Hahella chejuensis (strain KCTC 2396) GN=tolB PE=3
SV=1
Length = 430
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 29/178 (16%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+++A +DG + L+K + +WSP K + Y S F+S+R + + V
Sbjct: 180 LEVADADGRRSTELLKRSMPIISPAWSPDGKKLAYVS----FESQRPAIYVQDV------ 229
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
D R ++ G N+ P+ SPDG L + G+ L+VLD N
Sbjct: 230 -DTGTRTQVTS--------FKGLNSAPTWSPDGTKLAVTLSKDGNAELYVLDL----RNN 276
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
+++LT+ IDT SWSP G IAF+S+R + Y++ G RR+ G
Sbjct: 277 SLKRLTNHWAIDTEASWSPDGRTIAFTSDRGGGPQI-----YLVDASGGSPRRLTFEG 329
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 36/167 (21%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SPDGK L + S S ++V D G Q+T +++ P+WSP G +A
Sbjct: 203 PAWSPDGKKLAYVSFESQRPAIYVQDVDTGTRT----QVTSFKGLNSAPTWSPDGTKLAV 258
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRI--HVAGPEGSGDVDRERINHVCFSADGEWLLF 558
+ ++ N E LYV+ + L+R+ H A +D E +S DG + F
Sbjct: 259 TLSKDG--NAE---LYVLDLRNNSLKRLTNHWA-------IDTE----ASWSPDGRTIAF 302
Query: 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTP 605
T++ G P +Y+V G RRLT+ G N P
Sbjct: 303 TSDRGG-------GPQ-------IYLVDASGGSPRRLTFEGRYNSRP 335
>sp|Q89ED5|TOLB_BRAJA Protein TolB OS=Bradyrhizobium japonicum (strain USDA 110) GN=tolB
PE=3 SV=2
Length = 454
Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 29/173 (16%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NLFV+D + +LTD P IDT PS+SP G I F
Sbjct: 262 PRFSPDGQRVIMSLQQGGNSNLFVMDLRSRS----TTRLTDTPAIDTSPSYSPDGTRICF 317
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ G +RI S D + +S G+++ FT
Sbjct: 318 ESDRGGRSQI-----YVMAAGGGAAQRISF-----SKDDTNATYSTPVWSPRGDYIAFTR 367
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + V+K DGSG R LT +G+ N P + P ++
Sbjct: 368 QGGG----------QF----SIGVMKPDGSGERLLT-SGFHNEGPTFSPNGRV 405
Score = 33.1 bits (74), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 39 LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA 98
LT G+ + +F Q I ++ G P++Y + + E++ + P F R +
Sbjct: 208 LTRGSDLVLTPRFSP-NSQEITYMEFGQGDPKVYLFNIETGQREIVGNFPGMTFAPR-FS 265
Query: 99 RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVAS 158
+ + +S + + S L+ DL++ TRLT +D SPS S G I S
Sbjct: 266 PDGQRVIMSLQQGGN------SNLFVMDLRSRSTTRLTDTPAIDTSPSYSPDGTRICFES 319
>sp|Q8U9L4|TOLB_AGRT5 Protein TolB OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970)
GN=tolB PE=3 SV=2
Length = 435
Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + +LT+ IDT PS+SP G +AF
Sbjct: 252 PRFSPDGQKVIMSLQQDGNANIYTMDLRSRT----TTRLTNTAAIDTAPSYSPDGQRVAF 307
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ DGSG +R+ +GS + +S G+ + FT
Sbjct: 308 ESDRGGRQQI-----YVMNADGSGQQRVSFG--DGS-------YSTPVWSPRGDLIAFTK 353
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT +G+ N P W P ++
Sbjct: 354 QSGGKFS--------------IGVMKTDGSGERILT-SGFHNEGPTWAPNGRV 391
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 10/141 (7%)
Query: 34 FHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFH 93
F+ LT+ I +F + Q + ++S PR+Y + + + E++ + P F
Sbjct: 193 FNVRNLTNSNDIVLTPRFSPNR-QEVTYMSFEGQQPRVYLLQLETGQREVVGNFPGMTFS 251
Query: 94 DRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKF 153
R K+ I + +Q + +Y+ DL++ TRLT +D +PS S G+
Sbjct: 252 PRFSPDGQKV--IMSLQQDGN-----ANIYTMDLRSRTTTRLTNTAAIDTAPSYSPDGQR 304
Query: 154 IAVASYESRPWPGEFHELNTD 174
+A S R + + +N D
Sbjct: 305 VAFES--DRGGRQQIYVMNAD 323
>sp|Q5NR65|TOLB_ZYMMO Protein TolB OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821
/ ZM4 / CP4) GN=tolB PE=3 SV=1
Length = 458
Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 79/173 (45%), Gaps = 34/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDGK +VF +G+ +++ + G+ +LT P IDT PS+SP G I F
Sbjct: 276 PRFSPDGKTIVFSMSVAGNTDIYKVPVSGGQAT----RLTTSPGIDTAPSFSPDGSKIVF 331
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + Y++ DGS RI GSG R +S G+ + FT
Sbjct: 332 ESDRSGSQQI-----YIMNADGSNQNRISF----GSG-----RYATPVWSPRGDLIAFTK 377
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + V+K DGSG + LT NG+++ P+W P ++
Sbjct: 378 LGGGF---------------HVGVMKTDGSGEQILT-NGWQDEGPSWSPNGRV 414
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 114/290 (39%), Gaps = 46/290 (15%)
Query: 252 HDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQST 311
H KRLA+ + + + L P F + N + + Y + G S
Sbjct: 204 HRLKRLAIMDQDGANHRFLTNGQSMVLTPRF-------APNQQTVTYLSYVGNSPR---- 252
Query: 312 IPHLEPVASPVKELRMLRLNGSF-PSFSPDGGLIVFNHDFELNAGI-KIAKSDGSKRWTL 369
++ + S L + + N +F P FSPDG IVF+ N I K+ S G
Sbjct: 253 -IYVYTLGSGHVRLVVNKPNTTFAPRFSPDGKTIVFSMSVAGNTDIYKVPVSGGQATRLT 311
Query: 370 IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI 429
S+SP ++ F+S+R+ Q + +D +N+ I
Sbjct: 312 TSPGIDTAPSFSPDGSKIV-------FESDRSGSQ----QIYIMNADGSNQNRISFG--- 357
Query: 430 LTKEETGNNAFPSCSPDGKFLVF-RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTM 488
+G A P SP G + F + G H + D +GE + LT+G W D
Sbjct: 358 -----SGRYATPVWSPRGDLIAFTKLGGGFHVGVMKTDG-SGE-----QILTNG-WQDEG 405
Query: 489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGD 538
PSWSP G +IAF N + E +S+ D +G+ H+ P D
Sbjct: 406 PSWSPNGRVIAFFRTARNSGHTELWSV-----DLTGVNERHIPTPLDGSD 450
Score = 41.6 bits (96), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 67/165 (40%), Gaps = 18/165 (10%)
Query: 37 HR-LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDR 95
HR LT+G S+ +F Q QT+ ++S SPRIY GS L+ + P + F R
Sbjct: 219 HRFLTNGQSMVLTPRFAPNQ-QTVTYLSYVGNSPRIYVYTLGSGHVRLVVNKPNTTFAPR 277
Query: 96 PVARNNKLFF-ISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFI 154
+ F +S D +Y + + TRLT +D +PS S G I
Sbjct: 278 FSPDGKTIVFSMSVAGNTD--------IYKVPVSGGQATRLTTSPGIDTAPSFSPDGSKI 329
Query: 155 AVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWS 199
S R + + +N D S+ N+ R P WS
Sbjct: 330 VFES--DRSGSQQIYIMNAD-----GSNQNRISFGSGRYATPVWS 367
>sp|Q9A3H4|TOLB_CAUCR Protein TolB OS=Caulobacter crescentus (strain ATCC 19089 / CB15)
GN=tolB PE=3 SV=1
Length = 432
Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG + F R+G+ +++V+D + ++T P IDT PS+SP G I F
Sbjct: 250 PRFSPDGSKVAFSVERNGNSDIYVMDLRSRATT----RITTDPAIDTSPSFSPDGTKIVF 305
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
+S+R + YV+ DGSG+RRI G R +S G+++ FT
Sbjct: 306 NSDRGGQAQI-----YVMNTDGSGVRRISYGG---------GRYTTPVWSPRGDFIAFTK 351
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G +F + V++ DG G RL Y + P W P ++
Sbjct: 352 QTGG----------EFH----IGVMRADG-GDERLLTTSYLDEGPTWAPNGRV 389
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 107/243 (44%), Gaps = 29/243 (11%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA 354
Y R GE + + + P + +K L ++ +G+ P + DG IV F
Sbjct: 153 YERLTGEKGYFDTRVAFVAESGPKLNRIKRLAIMDQDGANPQYLTDGSYIVMTPRF---- 208
Query: 355 GIKIAKSDGSKRWTLIKDR----TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410
S S+ T + R + + + + + + G +F + R + ++V+F
Sbjct: 209 ------SSTSQELTYMALRPTGSSIYLLNLETSRQETVGKFPGMVF-APRFSPDGSKVAF 261
Query: 411 QLDPSDDNNREEIPCDVKILTKEET--GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV 468
++ + +++ + + T+ T + PS SPDG +VF S R G ++V+
Sbjct: 262 SVERNGNSDIYVMDLRSRATTRITTDPAIDTSPSFSPDGTKIVFNSDRGGQAQIYVM--- 318
Query: 469 NGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
N + +G +R+++ G T P WSP+GD IAF+ F + V++ DG R +
Sbjct: 319 NTDGSG-VRRISYGGGRYTTPVWSPRGDFIAFTKQTGG-----EFHIGVMRADGGDERLL 372
Query: 529 HVA 531
+
Sbjct: 373 TTS 375
Score = 42.4 bits (98), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 54/135 (40%), Gaps = 30/135 (22%)
Query: 477 RQLTDG--PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
RQ T G P + P +SP G +AFS R+ ++ YV+ RI
Sbjct: 236 RQETVGKFPGMVFAPRFSPDGSKVAFSVERNGNSDI-----YVMDLRSRATTRITT---- 286
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR 594
D FS DG ++F ++ G +YV+ DGSG+RR
Sbjct: 287 -----DPAIDTSPSFSPDGTKIVFNSDRGG--------------QAQIYVMNTDGSGVRR 327
Query: 595 LTWNGYENGTPAWHP 609
+++ G TP W P
Sbjct: 328 ISYGGGRYTTPVWSP 342
Score = 37.4 bits (85), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 10/136 (7%)
Query: 39 LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA 98
LTDG+ I +F Q + +++ R IY +S+ E + P +F R
Sbjct: 196 LTDGSYIVMTPRF-SSTSQELTYMALRPTGSSIYLLNLETSRQETVGKFPGMVFAPRFSP 254
Query: 99 RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVAS 158
+K+ F S + S +Y DL++ TR+T +D SPS S G I S
Sbjct: 255 DGSKVAF-SVERNGN------SDIYVMDLRSRATTRITTDPAIDTSPSFSPDGTKIVFNS 307
Query: 159 YESRPWPGEFHELNTD 174
R + + +NTD
Sbjct: 308 --DRGGQAQIYVMNTD 321
>sp|A5CBX4|TOLB_ORITB Protein TolB OS=Orientia tsutsugamushi (strain Boryong) GN=tolB
PE=3 SV=1
Length = 453
Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 65/118 (55%), Gaps = 18/118 (15%)
Query: 427 VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID 486
+K LTK ++ N + PS SPDG + F S RSG +++++ + G+I++LT P
Sbjct: 297 IKQLTKGQSINTS-PSYSPDGSKIAFVSDRSGSTQIYIMN----DQGGNIKRLTSQPGAY 351
Query: 487 TMPSWSPKGDLIAFSSNRHNPDNVEA--FSLYVIKPDGSGLRRIH----VAGPEGSGD 538
T P+WSP + IAF+ +EA FS+ VIK DGS R I V GP + D
Sbjct: 352 TTPAWSPTNNYIAFTK-------IEAGEFSIGVIKLDGSNKRIIATKYLVEGPSWAPD 402
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 74/177 (41%), Gaps = 48/177 (27%)
Query: 441 PSCSPDG-KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
P SPDG K LV S +++ ++ + G+ I+QLT G I+T PS+SP G IA
Sbjct: 265 PRFSPDGNKILVSNSSTKNVTHIYEINLLTGK----IKQLTKGQSINTSPSYSPDGSKIA 320
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559
F S+R SG +I++ +G G++ R T
Sbjct: 321 FVSDR------------------SGSTQIYIMNDQG-GNIKR----------------LT 345
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLY-------VVKLDGSGLRRLTWNGYENGTPAWHP 609
+ GA S N + + + V+KLDGS +R+ Y P+W P
Sbjct: 346 SQPGAYTTPAWSPTNNYIAFTKIEAGEFSIGVIKLDGSN-KRIIATKYLVEGPSWAP 401
Score = 37.7 bits (86), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 21/157 (13%)
Query: 305 STEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGS 364
ST+ + I + + +K+L + + PS+SPDG I F D + I I G
Sbjct: 280 STKNVTHIYEINLLTGKIKQLTKGQSINTSPSYSPDGSKIAFVSDRSGSTQIYIMNDQGG 339
Query: 365 KRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEI 423
L A+ +WSPT ++ +T ++ S + D +N+ I
Sbjct: 340 NIKRLTSQPGAYTTPAWSPTNNYIAFTK-----------IEAGEFSIGVIKLDGSNKRII 388
Query: 424 PCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHK 460
K L + PS +PDGK ++F K
Sbjct: 389 AT--KYLVEG-------PSWAPDGKTIIFSRAYKATK 416
>sp|A5V876|TOLB_SPHWW Protein TolB OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM
10273) GN=tolB PE=3 SV=1
Length = 439
Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 121/302 (40%), Gaps = 59/302 (19%)
Query: 318 VASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIK---IAKSDGSKRWTLIKDRT 374
A +L RL G P F D ++ + IK I DG+ L +T
Sbjct: 151 AAHKCADLVYTRLTGEGPYF--DSRVVYVSETGPKTNRIKRLAIMDQDGANHRFLTNGQT 208
Query: 375 AFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE 433
++P ++ + Y S + + RA V + +I + L +
Sbjct: 209 IVLTPRFAPNQQTITYMS----YTNNRARVYV---------------YDIGSGSQRLVVD 249
Query: 434 ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
+ P SPDG+ +VF G+ +++ + A G ++LT P IDT S+SP
Sbjct: 250 QPNMTFAPRFSPDGRTIVFSMAVGGNTDIYRVSAGGGT----PQRLTTSPGIDTGASYSP 305
Query: 494 KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADG 553
G I F S+R LYV+ DGS RI GSG R +S G
Sbjct: 306 DGSKIVFESDRSGTQQ-----LYVMNADGSNQNRISF----GSG-----RYGSAAWSPRG 351
Query: 554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
+ + FT G ++ ++ +DGSG + LT NG+++ P+W P ++
Sbjct: 352 DLIAFTKIGGGF---------------NVGIMNIDGSGEKILT-NGWQDEGPSWSPNGRV 395
Query: 614 DL 615
+
Sbjct: 396 IM 397
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 96/233 (41%), Gaps = 24/233 (10%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA 354
Y R GE S + ++ P + +K L ++ +G+ F +G IV F N
Sbjct: 160 YTRLTGEGPYFDSRVVYVSETGPKTNRIKRLAIMDQDGANHRFLTNGQTIVLTPRFAPNQ 219
Query: 355 GIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVI---YTSTGPIFQSERATVQIARVSFQ 411
S +T + R Y+ S +++ V+ + P F + T+ S
Sbjct: 220 QTITYMS-----YTNNRARVYVYDIGSGSQRLVVDQPNMTFAPRFSPDGRTIVF---SMA 271
Query: 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471
+ + D R G + S SPDG +VF S RSG + L+V++A
Sbjct: 272 VGGNTDIYRVSAGGGTPQRLTTSPGIDTGASYSPDGSKIVFESDRSGTQQLYVMNADGSN 331
Query: 472 FNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG 524
N +++ G +WSP+GDLIAF+ F++ ++ DGSG
Sbjct: 332 QN----RISFGSGRYGSAAWSPRGDLIAFTKIGG------GFNVGIMNIDGSG 374
>sp|Q9CM71|TOLB_PASMU Protein TolB OS=Pasteurella multocida (strain Pm70) GN=tolB PE=3
SV=1
Length = 432
Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 29/225 (12%)
Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHV 387
+L G +F IV H ++++ DG ++ + + + +WS K +
Sbjct: 160 KLTGIRGAFRTRIAYIVQKHGGSQPYEVRVSDYDGFNQFVVNRSAQPLMSPAWSHDGKKL 219
Query: 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
Y S F+++++ + + +++ + + G+N P+ SPDG
Sbjct: 220 AYVS----FENKKSQLVV---------------QDLGSGARKVVASFNGHNGAPAFSPDG 260
Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP 507
L F S + G N++V++ +G+ I QLT G +T PSWSP G I F+S+R
Sbjct: 261 SRLAFASSKDGVLNIYVMNLGSGQ----ISQLTSGTGNNTEPSWSPDGQTIVFTSDRSGS 316
Query: 508 DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD 552
V Y + G G + G SG + + + S D
Sbjct: 317 PQV-----YQMSASGGGASLVSTGGRSYSGQMTADGSAIIMISRD 356
Score = 40.4 bits (93), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 12/130 (9%)
Query: 38 RLTDGTSINFNAQFV-DGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRP 96
+LT GT N + DGQ TI F S+RSGSP++YQ L+ S + +
Sbjct: 287 QLTSGTGNNTEPSWSPDGQ--TIVFTSDRSGSPQVYQMSASGGGASLV-STGGRSYSGQM 343
Query: 97 VARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFT----RLTPYGVVDYSPSVSYSGK 152
A + + IS D I K A ST++ +S F ++P G++ S GK
Sbjct: 344 TADGSAIIMISR----DNIVKKDLASGSTEVLSSTFLDENPSISPNGIMIIYSSTQGLGK 399
Query: 153 FIAVASYESR 162
+ + S + R
Sbjct: 400 VLQLVSADGR 409
Score = 33.5 bits (75), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 102/258 (39%), Gaps = 45/258 (17%)
Query: 245 CFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL-------TLNPNFHHYNPFVSANSEFIG 297
+PA HDGK+LA + ++ + + DL + N H+ P S + +
Sbjct: 207 LMSPAWSHDGKKLAYVSFENKKS--QLVVQDLGSGARKVVASFNGHNGAPAFSPDGSRLA 264
Query: 298 YHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGI- 356
+ S +G I + + + +L N + PS+SPDG IVF D + +
Sbjct: 265 F----ASSKDGVLNIYVMNLGSGQISQLTSGTGNNTEPSWSPDGQTIVFTSDRSGSPQVY 320
Query: 357 KIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD 416
+++ S G R+ +G + A + I+R D
Sbjct: 321 QMSASGGGASLVSTGGRSY----------------SGQMTADGSAIIMISR--------D 356
Query: 417 DNNREEIPC-DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGD 475
+ ++++ ++L+ N PS SP+G +++ S + G + L + +G F
Sbjct: 357 NIVKKDLASGSTEVLSSTFLDEN--PSISPNGIMIIYSSTQ-GLGKVLQLVSADGRFKAR 413
Query: 476 IRQLTDGPWIDTMPSWSP 493
+ DG P+WSP
Sbjct: 414 LPG-NDGQV--KFPAWSP 428
>sp|B3CUF6|TOLB_ORITI Protein TolB OS=Orientia tsutsugamushi (strain Ikeda) GN=tolB PE=3
SV=1
Length = 453
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 18/113 (15%)
Query: 427 VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID 486
+K LTK ++ N + PS SPDG + F S RSG +++++ + G+I++LT P
Sbjct: 297 IKQLTKGQSINTS-PSYSPDGSKIAFVSDRSGSTQIYIMN----DQGGNIKRLTSQPGAY 351
Query: 487 TMPSWSPKGDLIAFSSNRHNPDNVEA--FSLYVIKPDGSGLRRIH----VAGP 533
T P+WSP + IAF+ +EA FS+ VIK DGS R I V GP
Sbjct: 352 TTPAWSPTNNYIAFTK-------IEAGEFSIGVIKLDGSNKRIIATKHLVEGP 397
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Query: 441 PSCSPDG-KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
P SPDG K LV S +++ ++ + G+ I+QLT G I+T PS+SP G IA
Sbjct: 265 PRFSPDGNKILVSNSSTKNVTHIYEINLLTGK----IKQLTKGQSINTSPSYSPDGSKIA 320
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
F S+R + +Y++ G ++R+
Sbjct: 321 FVSDRSG-----STQIYIMNDQGGNIKRL 344
Score = 37.0 bits (84), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 21/157 (13%)
Query: 305 STEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGS 364
ST+ + I + + +K+L + + PS+SPDG I F D + I I G
Sbjct: 280 STKNVTHIYEINLLTGKIKQLTKGQSINTSPSYSPDGSKIAFVSDRSGSTQIYIMNDQGG 339
Query: 365 KRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEI 423
L A+ +WSPT ++ +T ++ S + D +N+ I
Sbjct: 340 NIKRLTSQPGAYTTPAWSPTNNYIAFTK-----------IEAGEFSIGVIKLDGSNKRII 388
Query: 424 PCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHK 460
K L + PS +PDGK ++F K
Sbjct: 389 AT--KHLVEG-------PSWAPDGKTIIFSRAYKATK 416
>sp|Q8KEQ0|TOLB_CHLTE Protein TolB OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 /
TLS) GN=tolB PE=3 SV=1
Length = 434
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 31/172 (18%)
Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
G + P+ SPDG + F S R G +F+ D +G+ +R+LT +T PSWSP G
Sbjct: 290 GIDVSPTFSPDGSKMAFVSTRQGGPQIFIQDMNSGQ----VRRLTYSGIYNTQPSWSPNG 345
Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW 555
D I +SS + + + +++ I DGSGL ++ GSG+ + H +S DG
Sbjct: 346 DKILYSSMQKSGE----INIFSINVDGSGLLQL----TSGSGNNE-----HPSWSPDGSM 392
Query: 556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
++F++ LYV+ DGS R L E P+W
Sbjct: 393 IVFSSTRDGRRR--------------LYVMNADGSNQRPLLNMQGEQQQPSW 430
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 27/161 (16%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN---SWSPTEKHVIYTS 391
P+FSPDG + F + I I + + L + YN SWSP ++Y+S
Sbjct: 295 PTFSPDGSKMAFVSTRQGGPQIFIQDMNSGQVRRLTY--SGIYNTQPSWSPNGDKILYSS 352
Query: 392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451
+ + +I S +D S + +GNN PS SPDG +V
Sbjct: 353 M-------QKSGEINIFSINVDGSG-----------LLQLTSGSGNNEHPSWSPDGSMIV 394
Query: 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
F S R G + L+V++A +G + R L + PSWS
Sbjct: 395 FSSTRDGRRRLYVMNA-DGS---NQRPLLNMQGEQQQPSWS 431
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 35/170 (20%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD-LIA 499
P+ SPDG ++ + SG NL++ + G + + + P+W P + L+
Sbjct: 208 PAVSPDGTYIAWTDYTSGKPNLYIKNIATGA-----KVSVNKHGVCISPAWRPGTNTLVT 262
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559
S + D LY+I+ DG+ RR+ G DV FS DG + F
Sbjct: 263 TLSYEGDQD------LYLIRADGTVERRLTKGGGI---DV------SPTFSPDGSKMAFV 307
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ Q P +++ ++ +RRLT++G N P+W P
Sbjct: 308 ST------------RQGGP--QIFIQDMNSGQVRRLTYSGIYNTQPSWSP 343
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 37/172 (21%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI-RQLTDGPWIDTMPSWSPKGDLIA 499
P+ P LV G ++L+++ A +G + R+LT G ID P++SP G +A
Sbjct: 251 PAWRPGTNTLVTTLSYEGDQDLYLIRA-----DGTVERRLTKGGGIDVSPTFSPDGSKMA 305
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559
F S R + ++ + +RR+ +G + +S +G+ +L++
Sbjct: 306 FVSTRQGGPQI-----FIQDMNSGQVRRLTYSGIYNT---------QPSWSPNGDKILYS 351
Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYV--VKLDGSGLRRLTWNGYENGTPAWHP 609
+ Q G++ + + +DGSGL +LT N P+W P
Sbjct: 352 S---------------MQKSGEINIFSINVDGSGLLQLTSGSGNNEHPSWSP 388
Score = 39.7 bits (91), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 99/255 (38%), Gaps = 26/255 (10%)
Query: 122 LYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQES 181
+Y D +LT + +P+VS G +IA Y S G+ + +I +
Sbjct: 185 IYMCDFDGENVVQLTNSRSISLTPAVSPDGTYIAWTDYTS----GKPNLYIKNIATGAKV 240
Query: 182 DPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPP 241
NK + P W + + +G ++ + +E R+T
Sbjct: 241 SVNKHGVCIS----PAWRPGTNTLVTTLSYEGDQDLYLIRADGTVE--------RRLTKG 288
Query: 242 GVHCFTPAAFHDGKRLAVATRRKN------RNFRHIEIYDLTLNPNFHHYNPFVSANSEF 295
G +P DG ++A + R+ ++ ++ LT + ++ P S N +
Sbjct: 289 GGIDVSPTFSPDGSKMAFVSTRQGGPQIFIQDMNSGQVRRLTYS-GIYNTQPSWSPNGDK 347
Query: 296 IGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG 355
I Y + G+ I + S + +L N PS+SPDG +IVF+ +
Sbjct: 348 ILYSSMQ---KSGEINIFSINVDGSGLLQLTSGSGNNEHPSWSPDGSMIVFSSTRDGRRR 404
Query: 356 IKIAKSDGSKRWTLI 370
+ + +DGS + L+
Sbjct: 405 LYVMNADGSNQRPLL 419
>sp|A0KP93|TOLB_AERHH Protein TolB OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC
7966 / NCIB 9240) GN=tolB PE=3 SV=1
Length = 441
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 121/320 (37%), Gaps = 45/320 (14%)
Query: 310 STIP--HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW 367
+TIP + A + ++ RL G +F + + ++IA DG
Sbjct: 144 ATIPGAQMRQFAHRISDIVYERLTGERGAFLTRLAYVSVQQGTQFPYQLRIADYDGYNEK 203
Query: 368 TLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD 426
TL++ R + +WSP + Y S F+++++ + + ++I
Sbjct: 204 TLLRSREPLMSPAWSPDGSKLAYVS----FENQKSEIYV---------------QDIYTQ 244
Query: 427 VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID 486
+ L G N P SPDG+ L + G NL+V+D + + ++T ID
Sbjct: 245 QRSLITSFRGINGAPEWSPDGRRLAIVLSKDGSPNLYVVDVASKQLT----RVTTSRVID 300
Query: 487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYV-----------------IKPDGSGLRRIH 529
T PSW P G + F+S R + + +L I PDG + +
Sbjct: 301 TEPSWMPDGQNLLFTSERGGKPQIYSVNLATGMTRRMTWEGESNQGASITPDGKIM--VM 358
Query: 530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589
V +G + R+ + + + L + A + + +Q L +V DG
Sbjct: 359 VTRVQGQYRIARQDMENNALLVLTQSALDESPSVAPNGSMIIYATIYQGRKSLALVSTDG 418
Query: 590 SGLRRLTWNGYENGTPAWHP 609
L + E PAW P
Sbjct: 419 RFKAVLPTSSGEIRAPAWSP 438
>sp|A4WQ04|TOLB_RHOS5 Protein TolB OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH
2.4.3) GN=tolB PE=3 SV=1
Length = 444
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 34/182 (18%)
Query: 433 EETGNNAF-PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491
E+ G F P +PDG+ + F + G+ +++ LD +G RQLT+ P I+T PS+
Sbjct: 251 EQPGTMTFAPRFAPDGRTVAFSLEQGGNTDIYTLDTASGTR----RQLTNSPSIETAPSY 306
Query: 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSA 551
SP G I F S+R LY++ G RRI G+G R +S
Sbjct: 307 SPDGSQIVFESDRSGGQQ-----LYIMPAGGGEPRRIS----NGAG-----RYGTPVWSP 352
Query: 552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGN 611
G+ + FT Q Q + V++ DGS R LT + + G P W P
Sbjct: 353 RGDLIAFT--------------KQHQGRFHIGVMRTDGSEERLLTASFLDEG-PTWAPNG 397
Query: 612 QL 613
++
Sbjct: 398 RV 399
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 64/169 (37%), Gaps = 47/169 (27%)
Query: 408 VSFQLDPSDDNNREEIPCDVKILTKEETGNN----AFPSCSPDGKFLVFRSGRSGHKNLF 463
V+F L+ N + D T+ + N+ PS SPDG +VF S RSG + L+
Sbjct: 269 VAFSLE--QGGNTDIYTLDTASGTRRQLTNSPSIETAPSYSPDGSQIVFESDRSGGQQLY 326
Query: 464 VLDAVNGE---------------------------------------FNGDIRQLTDGPW 484
++ A GE +G +L +
Sbjct: 327 IMPAGGGEPRRISNGAGRYGTPVWSPRGDLIAFTKQHQGRFHIGVMRTDGSEERLLTASF 386
Query: 485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP 533
+D P+W+P G ++ F+ R +LY + G L+++ ++ P
Sbjct: 387 LDEGPTWAPNGRVLMFT--REGAGAGGQPALYSVDISGRNLKKVPLSVP 433
>sp|Q1QHQ6|TOLB_NITHX Protein TolB OS=Nitrobacter hamburgensis (strain X14 / DSM 10229)
GN=tolB PE=3 SV=1
Length = 450
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 80/173 (46%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P +PDG+ ++ + G+ NLFV+D + +LTD P IDT PS+SP G I F
Sbjct: 267 PRFAPDGQRIIMSLQQGGNSNLFVMDLRSKSTT----RLTDTPAIDTSPSYSPDGGRICF 322
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + YV+ G +RI EGS + +S G+++ FT
Sbjct: 323 ESDRGGRPQI-----YVMGATGGAAQRISFG--EGS-------YSTPVWSPRGDYIAFTK 368
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G QF + ++K DGSG R LT +G+ N P + P ++
Sbjct: 369 QGGG----------QF----SIGIIKPDGSGERILT-SGFHNEGPTFAPNGRV 406
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Query: 39 LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA 98
LT G + +F Q I ++ G PR+Y + + E++ + P F R A
Sbjct: 213 LTRGADLVITPRFSP-STQEITYMEFGQGDPRVYLFNIETGQREIVGNFPGMSFSPR-FA 270
Query: 99 RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVAS 158
+ + +S + + S L+ DL++ TRLT +D SPS S G I S
Sbjct: 271 PDGQRIIMSLQQGGN------SNLFVMDLRSKSTTRLTDTPAIDTSPSYSPDGGRICFES 324
>sp|B9JRY0|TOLB_AGRVS Protein TolB OS=Agrobacterium vitis (strain S4 / ATCC BAA-846)
GN=tolB PE=3 SV=1
Length = 435
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 55/97 (56%), Gaps = 13/97 (13%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS +PDG+ +VF S R G + L+V+ N + +G R ++ G + P WSP+GDLIAF
Sbjct: 296 PSYAPDGRRIVFESDRGGRQQLYVM---NSDGSGQTR-ISFGEGSYSTPVWSPRGDLIAF 351
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGP 533
+ FS+ V+KPDGSG R + H GP
Sbjct: 352 TKQSGG-----KFSIGVMKPDGSGERLLTTGFHNEGP 383
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 72/173 (41%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + + N++ +D + IDT PS++P G I F
Sbjct: 252 PRFSPDGQRVIMSLQQDANSNIYTMDLRSRTTTRLTSTAA----IDTSPSYAPDGRRIVF 307
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LYV+ DGSG RI EGS + +S G+ + FT
Sbjct: 308 ESDRGGRQQ-----LYVMNSDGSGQTRISFG--EGS-------YSTPVWSPRGDLIAFTK 353
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT G+ N P W P ++
Sbjct: 354 QSGGKFS--------------IGVMKPDGSGERLLT-TGFHNEGPTWAPNGRV 391
>sp|Q9PC84|TOLB_XYLFA Protein TolB OS=Xylella fastidiosa (strain 9a5c) GN=tolB PE=3 SV=2
Length = 439
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 57/284 (20%)
Query: 352 LNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410
+ + +A SDG T+++ + WSP K + Y S F+ +++ I
Sbjct: 182 MRYALMVADSDGYNPQTIVRSAEPLLSPDWSPDGKKLAYVS----FEKGGSSIYI----- 232
Query: 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG 470
++I + L G NA PS +PDG + RSG+ ++V+D V+
Sbjct: 233 ----------QDIATGSRELVSSFRGINAAPSFAPDGHRIALSLSRSGNPEIYVMDLVSK 282
Query: 471 EFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530
+ + QLT+ IDT P+WS G I F+S+R + Y + G R+
Sbjct: 283 Q----LIQLTNSFGIDTEPAWSSDGKFIYFTSDRGGRPQI-----YKVASVGGTATRVTF 333
Query: 531 AG-----------------PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP 573
G +GSG+V R + + G + T + G++ P P
Sbjct: 334 QGNYNATTSVSYDDKKIVVAQGSGNVYRIAMMD---QSSGSTVWNTLSTGSLDESPSFAP 390
Query: 574 NQFQPY--------GDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
N G LY V D +RL + PAW P
Sbjct: 391 NASMVLYAAREGGRGVLYAVSADARVRQRLVSVDSDVREPAWGP 434
>sp|Q167Z6|TOLB_ROSDO Protein TolB OS=Roseobacter denitrificans (strain ATCC 33942 / OCh
114) GN=tolB PE=3 SV=1
Length = 443
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
PS SPDG +VF S RSG + L+V+ A NG G+ R+++ GP P WSP+GDL+AF
Sbjct: 303 PSYSPDGTQIVFESDRSGSQQLYVMPA-NG---GEARRISFGPGRYGTPVWSPRGDLVAF 358
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA----GPEGSGDVDRERINHVCFSADGEWL 556
+ N F + V++ DGS R + + GP S + + A G
Sbjct: 359 TKQ-----NAGRFHIGVMRLDGSEERLLTASFLDEGPTWSPNGRVIMFSRETQGAQGRAT 413
Query: 557 LFTANLGAVMAEPVSWPN 574
L++ ++ PV P
Sbjct: 414 LYSVDITGRNLRPVRTPE 431
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 35/187 (18%)
Query: 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489
L +E + P +PDG+ +VF + G+ +++ ++ VNG G +LT P I+T P
Sbjct: 248 LESQEGTMSFAPRFAPDGQTIVFSLSQGGNTDIYRMN-VNG---GSATRLTSAPSIETAP 303
Query: 490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCF 549
S+SP G I F S+R LYV+ +G RRI GP R +
Sbjct: 304 SYSPDGTQIVFESDRSGSQQ-----LYVMPANGGEARRISF-GP--------GRYGTPVW 349
Query: 550 SADGEWLLFTA-NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWH 608
S G+ + FT N G +F + V++LDGS R LT + + G P W
Sbjct: 350 SPRGDLVAFTKQNAG-----------RFH----IGVMRLDGSEERLLTASFLDEG-PTWS 393
Query: 609 PGNQLDL 615
P ++ +
Sbjct: 394 PNGRVIM 400
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 78/205 (38%), Gaps = 29/205 (14%)
Query: 335 PSFSPDGGLIVFNHDFELNAGI-KIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTG 393
P F+PDG IVF+ N I ++ + GS S+SP +
Sbjct: 259 PRFAPDGQTIVFSLSQGGNTDIYRMNVNGGSATRLTSAPSIETAPSYSPDGTQI------ 312
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453
+F+S+R+ Q + P++ I G P SP G + F
Sbjct: 313 -VFESDRSGSQ----QLYVMPANGGEARRISFG--------PGRYGTPVWSPRGDLVAFT 359
Query: 454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF 513
+G ++ V+ +G +L ++D P+WSP G +I FS R
Sbjct: 360 KQNAGRFHIGVM-----RLDGSEERLLTASFLDEGPTWSPNGRVIMFS--RETQGAQGRA 412
Query: 514 SLYVIKPDGSGLRRIHVAGPEGSGD 538
+LY + G LR + PEG D
Sbjct: 413 TLYSVDITGRNLRPVRT--PEGGSD 435
>sp|Q926C2|TOLB_RHIME Protein TolB OS=Rhizobium meliloti (strain 1021) GN=tolB PE=3 SV=1
Length = 436
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 54/98 (55%), Gaps = 15/98 (15%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR-QLTDGPWIDTMPSWSPKGDLIA 499
PS SPDG +VF S R G + L+V+ A + +G R DG + + P WSP+GDLIA
Sbjct: 297 PSYSPDGSRIVFESDRGGKQQLYVMGA---DGSGQTRISFGDGSY--STPVWSPRGDLIA 351
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGP 533
F+ FS+ V+KPDGSG R + H GP
Sbjct: 352 FTKQSGG-----KFSIGVMKPDGSGERILTTGFHNEGP 384
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 77/173 (44%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ N++ +D + +LT+ IDT PS+SP G I F
Sbjct: 253 PRFSPDGQRVIMSLQQEGNANIYTMDLRSRTTT----RLTNTAAIDTSPSYSPDGSRIVF 308
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R LYV+ DGSG RI +GS + +S G+ + FT
Sbjct: 309 ESDRGGKQQ-----LYVMGADGSGQTRISFG--DGS-------YSTPVWSPRGDLIAFTK 354
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G + + V+K DGSG R LT G+ N P W P ++
Sbjct: 355 QSGGKFS--------------IGVMKPDGSGERILT-TGFHNEGPTWAPNGRV 392
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 57 QTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIF 116
Q I ++S + PR+Y + + + E++ + P F R + + + +S ++ +
Sbjct: 216 QEITYMSFENQQPRVYLLQLETGQREVVGNFPGMTFAPR-FSPDGQRVIMSLQQEGN--- 271
Query: 117 KSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVAS 158
+ +Y+ DL++ TRLT +D SPS S G I S
Sbjct: 272 ---ANIYTMDLRSRTTTRLTNTAAIDTSPSYSPDGSRIVFES 310
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 32/164 (19%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNS--WSPTEKHVIYTST 392
PS+SPDG IVF D + + +DGS + T I Y++ WSP + +T
Sbjct: 297 PSYSPDGSRIVFESDRGGKQQLYVMGADGSGQ-TRISFGDGSYSTPVWSPRGDLIAFTKQ 355
Query: 393 GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETG-NNAFPSCSPDGKFLV 451
+ S + D + +ILT TG +N P+ +P+G+ L+
Sbjct: 356 SG-----------GKFSIGVMKPDGSGE-------RILT---TGFHNEGPTWAPNGRVLM 394
Query: 452 F--RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
F ++ +G L+ +D G QL + P+WSP
Sbjct: 395 FFRQNAGAGGPQLYSID-----LTGYNEQLVQTQGFASDPAWSP 433
>sp|A6UCS7|TOLB_SINMW Protein TolB OS=Sinorhizobium medicae (strain WSM419) GN=tolB PE=3
SV=1
Length = 436
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 54/98 (55%), Gaps = 15/98 (15%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR-QLTDGPWIDTMPSWSPKGDLIA 499
PS SPDG +VF S R G + L+V+ A + +G R DG + + P WSP+GDLIA
Sbjct: 297 PSYSPDGSRVVFESDRGGRQQLYVMGA---DGSGQTRISFGDGSY--STPVWSPRGDLIA 351
Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGP 533
F+ FS+ V+KPDGSG R + H GP
Sbjct: 352 FTKQSGG-----KFSIGVMKPDGSGERILTTGFHNEGP 384
Score = 37.4 bits (85), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 57 QTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIF 116
Q I ++S + PR+Y + + + E++ + P F R + + + +S ++ +
Sbjct: 216 QEITYMSFENQQPRVYLLQLETGQREVVGNFPGMTFAPR-FSPDGQRVIMSLQQEGN--- 271
Query: 117 KSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVAS 158
+ +Y+ DL++ TRLT +D SPS S G + S
Sbjct: 272 ---ANIYTMDLRSRTTTRLTNTAAIDTSPSYSPDGSRVVFES 310
Score = 33.1 bits (74), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 32/164 (19%)
Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNS--WSPTEKHVIYTST 392
PS+SPDG +VF D + + +DGS + T I Y++ WSP + +T
Sbjct: 297 PSYSPDGSRVVFESDRGGRQQLYVMGADGSGQ-TRISFGDGSYSTPVWSPRGDLIAFTKQ 355
Query: 393 GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETG-NNAFPSCSPDGKFLV 451
+ S + D + +ILT TG +N P+ +P+G+ L+
Sbjct: 356 SG-----------GKFSIGVMKPDGSGE-------RILT---TGFHNEGPTWAPNGRVLM 394
Query: 452 F--RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
F ++ +G L+ +D G QL + P+WSP
Sbjct: 395 FFRQNAGAGGPQLYSID-----LTGYNEQLVPTQGFASDPAWSP 433
>sp|Q474K8|TOLB_CUPPJ Protein TolB OS=Cupriavidus pinatubonensis (strain JMP134 / LMG
1197) GN=tolB PE=3 SV=1
Length = 450
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 111/284 (39%), Gaps = 69/284 (24%)
Query: 358 IAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD 416
I+ SDG + + L + SWSP + V Y S F++++ V +
Sbjct: 201 ISDSDGQNSQVALTSNEPIISPSWSPDGRRVAYVS----FEAKKPVVYV----------- 245
Query: 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI 476
++ + L + GNN+ PS SPDG+ L R G+ ++ VN + +G I
Sbjct: 246 ----HDLATGKRTLVSNQKGNNSAPSWSPDGQHLAVALSRDGNTQVY---QVNADGSG-I 297
Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV--------EAFSLY------------ 516
R+LT IDT P +SP G I F+S+R V EA S
Sbjct: 298 RRLTRSSAIDTEPQYSPDGKSIYFTSDRGGAPQVYRMPAGGEEAGSAQRVTFKGSYNVSP 357
Query: 517 VIKPDGSGLRRIHVAG-------PEGSGDV----DRERINHVCFSADGEWLLFTANLGAV 565
I PDG L I +G +GDV D F+A+G+++L+ +G
Sbjct: 358 RISPDGKYLAYITRSGGFKLQLQDLTNGDVTSLTDTSNDEAPSFAANGKYILYATRVGGR 417
Query: 566 MAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
L V DG + L+ + P+W P
Sbjct: 418 SV--------------LAAVSTDGRTRQVLSLQSGDVREPSWGP 447
>sp|Q5P4Z6|TOLB_AROAE Protein TolB OS=Aromatoleum aromaticum (strain EbN1) GN=tolB PE=3
SV=1
Length = 426
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 29/178 (16%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
++IA +DG T + R + +W+P + + Y S F++++ V + ++
Sbjct: 177 LQIADADGMNAQTALASREPIISPAWAPDGQRLAYVS----FEAKKPVVYVHTLA----- 227
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+ + + K G+N+ P+ +PDG+ L + G L+VL N + +G
Sbjct: 228 ---TGQRHVVANFK-------GSNSAPTWAPDGQRLAVVLTKDGQSQLYVL---NADGSG 274
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
+R++ P IDT P+WSP G+ I FSS+R + +Y I G +R+ G
Sbjct: 275 -LRRMATSPGIDTEPAWSPDGEWIYFSSDRGG-----SAQIYRIPASGGSAQRVTFEG 326
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 44/175 (25%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE------FNGDIRQLTDGPWIDTMPSWSPK 494
P+ +PDG+ L + S + ++V G+ F G ++ P+W+P
Sbjct: 200 PAWAPDGQRLAYVSFEAKKPVVYVHTLATGQRHVVANFKGS----------NSAPTWAPD 249
Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
G +A + LYV+ DGSGLRR+ S +D E +S DGE
Sbjct: 250 GQRLAVVLTKDGQSQ-----LYVLNADGSGLRRMAT-----SPGIDTE----PAWSPDGE 295
Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
W+ F+++ G +Y + G +R+T+ G N TP P
Sbjct: 296 WIYFSSDRGG--------------SAQIYRIPASGGSAQRVTFEGNYNVTPRLSP 336
Score = 33.1 bits (74), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 29/185 (15%)
Query: 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTS 391
S P+++PDG + + + + + +DGS R +WSP + IY
Sbjct: 242 SAPTWAPDGQRLAVVLTKDGQSQLYVLNADGSGLRRMATSPGIDTEPAWSP-DGEWIY-- 298
Query: 392 TGPIFQSERA-TVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGN-NAFPSCSPDGKF 449
F S+R + QI R+ P+ + + + + GN N P SPDG+
Sbjct: 299 ----FSSDRGGSAQIYRI-----PASGGSAQRVTFE---------GNYNVTPRLSPDGRS 340
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDN 509
L F + +G + V+D + LTD D PS++P G +I +++
Sbjct: 341 LAFITRNNGRFQVAVMDLATRQTT----ILTDSSR-DESPSFAPNGRMILYATESGGRGV 395
Query: 510 VEAFS 514
+ A S
Sbjct: 396 LAAVS 400
>sp|Q3J041|TOLB_RHOS4 Protein TolB OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1
/ NCIB 8253 / DSM 158) GN=tolB PE=3 SV=1
Length = 444
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 34/182 (18%)
Query: 433 EETGNNAF-PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491
E+ G F P +PDG+ + F + G+ +++ LD +G RQLT+ P I+T PS+
Sbjct: 251 EQPGTMTFAPRFAPDGRTVAFSLEQGGNTDIYTLDTGSGTR----RQLTNSPSIETAPSY 306
Query: 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSA 551
SP G I F S+R LY++ G RRI G+G R +S
Sbjct: 307 SPDGSQIVFESDRSGGQQ-----LYIMPAGGGEPRRIS----NGAG-----RYGTPVWSP 352
Query: 552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGN 611
G+ + FT Q Q + V++ DGS R LT + + G P W P
Sbjct: 353 RGDLIAFT--------------KQHQGRFHIGVMRTDGSEERLLTASFLDEG-PTWAPNG 397
Query: 612 QL 613
++
Sbjct: 398 RV 399
Score = 38.5 bits (88), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 47/169 (27%)
Query: 408 VSFQLDPSDDNNREEIPCDVKILTKEETGNN----AFPSCSPDGKFLVFRSGRSGHKNLF 463
V+F L+ N + D T+ + N+ PS SPDG +VF S RSG + L+
Sbjct: 269 VAFSLE--QGGNTDIYTLDTGSGTRRQLTNSPSIETAPSYSPDGSQIVFESDRSGGQQLY 326
Query: 464 VLDAVNGE---------------------------------------FNGDIRQLTDGPW 484
++ A GE +G +L +
Sbjct: 327 IMPAGGGEPRRISNGAGRYGTPVWSPRGDLIAFTKQHQGRFHIGVMRTDGSEERLLTASF 386
Query: 485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP 533
+D P+W+P G ++ F+ A LY + G L+++ ++ P
Sbjct: 387 LDEGPTWAPNGRVLMFTREGAGAGGQPA--LYSVDISGRNLKKVPLSVP 433
>sp|A3PM58|TOLB_RHOS1 Protein TolB OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH
2.4.9) GN=tolB PE=3 SV=1
Length = 444
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 34/182 (18%)
Query: 433 EETGNNAF-PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491
E+ G F P +PDG+ + F + G+ +++ LD +G RQLT+ P I+T PS+
Sbjct: 251 EQPGTMTFAPRFAPDGRTVAFSLEQGGNTDIYTLDTGSGTR----RQLTNSPSIETAPSY 306
Query: 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSA 551
SP G I F S+R LY++ G RRI G+G R +S
Sbjct: 307 SPDGSQIVFESDRSGGQQ-----LYIMPAGGGEPRRIS----NGAG-----RYGTPVWSP 352
Query: 552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGN 611
G+ + FT Q Q + V++ DGS R LT + + G P W P
Sbjct: 353 RGDLIAFT--------------KQHQGRFHIGVMRTDGSEERLLTASFLDEG-PTWAPNG 397
Query: 612 QL 613
++
Sbjct: 398 RV 399
Score = 38.5 bits (88), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 47/169 (27%)
Query: 408 VSFQLDPSDDNNREEIPCDVKILTKEETGNN----AFPSCSPDGKFLVFRSGRSGHKNLF 463
V+F L+ N + D T+ + N+ PS SPDG +VF S RSG + L+
Sbjct: 269 VAFSLE--QGGNTDIYTLDTGSGTRRQLTNSPSIETAPSYSPDGSQIVFESDRSGGQQLY 326
Query: 464 VLDAVNGE---------------------------------------FNGDIRQLTDGPW 484
++ A GE +G +L +
Sbjct: 327 IMPAGGGEPRRISNGAGRYGTPVWSPRGDLIAFTKQHQGRFHIGVMRTDGSEERLLTASF 386
Query: 485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP 533
+D P+W+P G ++ F+ A LY + G L+++ ++ P
Sbjct: 387 LDEGPTWAPNGRVLMFTREGAGAGGQPA--LYSVDISGRNLKKVPLSVP 433
>sp|Q1RJW5|TOLB_RICBR Protein TolB OS=Rickettsia bellii (strain RML369-C) GN=tolB PE=3
SV=1
Length = 444
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 130/320 (40%), Gaps = 41/320 (12%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA 354
Y + G++ S I ++ P VK + ++ +G+ + DG +V F +A
Sbjct: 151 YEKITGDTGYFDSKIIYVAESGPDLKKVKRIALMDYDGANNRYITDGKSLVLTPRFSGSA 210
Query: 355 GIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
S +KR TL+ Y T K I I + R + +
Sbjct: 211 DKIFYVSYATKRRTLV------YEKDLKTGKESIVGDFAGISFAPRFAPDGRKAVMSIAK 264
Query: 415 SDDNNREEIPCDVKILTK--EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
+ + EI K L K + G N PS SPDG+ +VF S R+G L+++++
Sbjct: 265 NGSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGRRIVFNSDRNGVPQLYIMNSD---- 320
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP---DGSGLRRIH 529
++++++ G PSWSP+GD IAF+ + + F++ V+KP D R+
Sbjct: 321 GSNVQRISFGGGSYMAPSWSPRGDYIAFTKIIRGSEG-KTFNIGVMKPYPQDDENSERVI 379
Query: 530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGD--LYVVKL 587
+G + C+S +G ++F WP+ + G +Y + L
Sbjct: 380 ASG---------YLVESPCWSPNGRVIMFAK----------GWPSNGKSSGKNRIYAIDL 420
Query: 588 DGSGLRRLTWNGYENGTPAW 607
G R + G + P W
Sbjct: 421 TGHNEREIKTPG-DASDPEW 439
>sp|A8GXK7|TOLB_RICB8 Protein TolB OS=Rickettsia bellii (strain OSU 85-389) GN=tolB PE=3
SV=1
Length = 444
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 130/320 (40%), Gaps = 41/320 (12%)
Query: 298 YHRFRGESTEGQSTIPHLE---PVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA 354
Y + G++ S I ++ P VK + ++ +G+ + DG +V F +A
Sbjct: 151 YEKITGDTGYFDSKIIYVAESGPDLKKVKRIALMDYDGANNRYITDGKSLVLTPRFSGSA 210
Query: 355 GIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
S +KR TL+ Y T K I I + R + +
Sbjct: 211 DKIFYVSYATKRRTLV------YEKDLKTGKESIVGDFAGISFAPRFAPDGRKAVMSIAK 264
Query: 415 SDDNNREEIPCDVKILTK--EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
+ + EI K L K + G N PS SPDG+ +VF S R+G L+++++
Sbjct: 265 NGSTHIYEIDLATKRLHKLTDGFGINTSPSYSPDGRRIVFNSDRNGVPQLYIMNSD---- 320
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP---DGSGLRRIH 529
++++++ G PSWSP+GD IAF+ + + F++ V+KP D R+
Sbjct: 321 GSNVQRISFGGGSYMAPSWSPRGDYIAFTKIIRGSEG-KTFNIGVMKPYPQDDENSERVI 379
Query: 530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGD--LYVVKL 587
+G + C+S +G ++F WP+ + G +Y + L
Sbjct: 380 ASG---------YLVESPCWSPNGRVIMFAK----------GWPSNGKSSGKNRIYAIDL 420
Query: 588 DGSGLRRLTWNGYENGTPAW 607
G R + G + P W
Sbjct: 421 TGHNEREIKTPG-DASDPEW 439
>sp|Q4QNG0|TOLB_HAEI8 Protein TolB OS=Haemophilus influenzae (strain 86-028NP) GN=tolB
PE=3 SV=1
Length = 427
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 46/206 (22%)
Query: 356 IKIAKSDGSKRWTLIKDRTA---FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412
+++A DG ++ I +R+A +WSP + + Y S F+++++ + +
Sbjct: 184 VRVADYDGYNQF--IVNRSAQPIMSPAWSPDGQRLAYVS----FENKKSQLVV------- 230
Query: 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
+++ + + G+N P+ SPDG L F S R G N++V+ A NG
Sbjct: 231 --------QDLNSGARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGA-NG-- 279
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
G QLT G +T P+WSP G+ I F+S+R S V + D SG V G
Sbjct: 280 -GTPTQLTSGAGNNTEPAWSPDGNSILFTSDRSG-------SPQVYRMDASGGSATAVGG 331
Query: 533 PEGSGDVDRERINHVCFSADGEWLLF 558
GS + SADG+ L+
Sbjct: 332 -RGSAQI----------SADGKTLVM 346
Score = 36.6 bits (83), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 32/102 (31%)
Query: 435 TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA-------------------------VN 469
GNN P+ SPDG ++F S RSG ++ +DA +N
Sbjct: 289 AGNNTEPAWSPDGNSILFTSDRSGSPQVYRMDASGGSATAVGGRGSAQISADGKTLVMIN 348
Query: 470 GEFNGDIRQLTDG-------PWIDTMPSWSPKGDLIAFSSNR 504
G N + LT G ++ PS SP G +I +SS +
Sbjct: 349 GNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQ 390
Score = 33.1 bits (74), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 29/126 (23%)
Query: 489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVC 548
P+WSP G +A+ S + S V++ SG R++ VA +G
Sbjct: 207 PAWSPDGQRLAYVSFENKK------SQLVVQDLNSGARKV-VASFQGHNGAP-------A 252
Query: 549 FSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWH 608
FS DG L F ++ V+ ++YV+ +G +LT N PAW
Sbjct: 253 FSPDGSRLAFASSRDGVL--------------NIYVMGANGGTPTQLTSGAGNNTEPAWS 298
Query: 609 P-GNQL 613
P GN +
Sbjct: 299 PDGNSI 304
>sp|P44677|TOLB_HAEIN Protein TolB OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=tolB PE=3 SV=1
Length = 427
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 46/206 (22%)
Query: 356 IKIAKSDGSKRWTLIKDRTA---FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412
+++A DG ++ I +R+A +WSP + + Y S F+++++ + +
Sbjct: 184 VRVADYDGYNQF--IVNRSAQPIMSPAWSPDGQRLAYVS----FENKKSQLVV------- 230
Query: 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
+++ + + G+N P+ SPDG L F S R G N++V+ A NG
Sbjct: 231 --------QDLNSGARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGA-NG-- 279
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
G QLT G +T P+WSP G+ I F+S+R S V + D SG V G
Sbjct: 280 -GTPTQLTSGAGNNTEPAWSPDGNSILFTSDRSG-------SPQVYRMDASGGSATAVGG 331
Query: 533 PEGSGDVDRERINHVCFSADGEWLLF 558
GS + SADG+ L+
Sbjct: 332 -RGSAQI----------SADGKTLVM 346
Score = 36.2 bits (82), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 32/102 (31%)
Query: 435 TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA-------------------------VN 469
GNN P+ SPDG ++F S RSG ++ +DA +N
Sbjct: 289 AGNNTEPAWSPDGNSILFTSDRSGSPQVYRMDASGGSATAVGGRGSAQISADGKTLVMIN 348
Query: 470 GEFNGDIRQLTDG-------PWIDTMPSWSPKGDLIAFSSNR 504
G N + LT G ++ PS SP G +I +SS +
Sbjct: 349 GNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQ 390
Score = 33.1 bits (74), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 29/126 (23%)
Query: 489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVC 548
P+WSP G +A+ S + S V++ SG R++ VA +G
Sbjct: 207 PAWSPDGQRLAYVSFENKK------SQLVVQDLNSGARKV-VASFQGHNGAP-------A 252
Query: 549 FSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWH 608
FS DG L F ++ V+ ++YV+ +G +LT N PAW
Sbjct: 253 FSPDGSRLAFASSRDGVL--------------NIYVMGANGGTPTQLTSGAGNNTEPAWS 298
Query: 609 P-GNQL 613
P GN +
Sbjct: 299 PDGNSI 304
>sp|B0U2E8|TOLB_XYLFM Protein TolB OS=Xylella fastidiosa (strain M12) GN=tolB PE=3 SV=1
Length = 439
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 109/284 (38%), Gaps = 57/284 (20%)
Query: 352 LNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410
+ + +A SDG T+++ + WSP K + Y S F+ +++ I
Sbjct: 182 MRYALMVADSDGYNPQTIVRSAEPLLSPDWSPDGKKLAYVS----FEKGGSSIYI----- 232
Query: 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG 470
++I + L G NA PS +PDG + RSG+ ++V+D V+
Sbjct: 233 ----------QDIATGSRELVSSFRGINAAPSFAPDGHRIALSLSRSGNPEIYVMDLVSK 282
Query: 471 EFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530
+ + QLT+ IDT P WS G I F+S+R + Y + G R+
Sbjct: 283 Q----LIQLTNSFGIDTEPVWSSDGKFIYFTSDRGGRPQI-----YKVASVGGTATRVTF 333
Query: 531 AG-----------------PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP 573
G +GSG+V R + + G + T + G++ P P
Sbjct: 334 QGNYNATASVSYDDKKIVVAQGSGNVYRIAMMD---QSSGSTVWNTLSTGSLDESPSFAP 390
Query: 574 NQFQPY--------GDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
N G LY V D +RL + PAW P
Sbjct: 391 NASMVLYAAREGGRGVLYAVSADARVRQRLVSVDSDVREPAWGP 434
>sp|Q0AC40|TOLB_ALHEH Protein TolB OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=tolB
PE=3 SV=1
Length = 428
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 115/261 (44%), Gaps = 44/261 (16%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A +DG + +++ R + +WSP + Y S F+ R+ + + +
Sbjct: 183 LMVADADGQRPREILESRQPIMSPAWSPERDRLAYVS----FEGGRSEIYVQNLR----- 233
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
R+ I G N+ P+ SPDG+ L R G N+++L +G
Sbjct: 234 --SGQRDRIAS--------FRGINSAPAWSPDGRHLAVTLSRDGRANIYLLRLDDGH--- 280
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-- 532
+R+LTD IDT P++SP G+ IAF+S+R V ++L V P G+ R+ G
Sbjct: 281 -VRRLTDHWAIDTEPTFSPDGERIAFTSDRGGRPQV--YTLAVNGP--GGVERVTFDGDY 335
Query: 533 ---PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS---WPNQ--FQPYGDLYV 584
P S D R + H +G + + +L + ++ W F P GD+ +
Sbjct: 336 NARPNWSPDGRRIAMVH---RHNGSFRIAVHDLESDRTRVLTDGPWDESPVFAPNGDMIM 392
Query: 585 VKLDGSG---LRRLTWNGYEN 602
GSG LR ++ +G N
Sbjct: 393 YSAGGSGDSRLRTVSVHGRAN 413
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 37/172 (21%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P+ SP+ L + S G ++V + +G+ + ++ I++ P+WSP G +A
Sbjct: 206 PAWSPERDRLAYVSFEGGRSEIYVQNLRSGQRD----RIASFRGINSAPAWSPDGRHLAV 261
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRI--HVAGPEGSGDVDRERINHVCFSADGEWLLF 558
+ +R N+ Y+++ D +RR+ H A +D E FS DGE + F
Sbjct: 262 TLSRDGRANI-----YLLRLDDGHVRRLTDHWA-------IDTE----PTFSPDGERIAF 305
Query: 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDG-SGLRRLTWNGYENGTPAWHP 609
T++ G +P +Y + ++G G+ R+T++G N P W P
Sbjct: 306 TSDRGG------------RP--QVYTLAVNGPGGVERVTFDGDYNARPNWSP 343
>sp|Q8P6F2|TOLB_XANCP Protein TolB OS=Xanthomonas campestris pv. campestris (strain ATCC
33913 / NCPPB 528 / LMG 568) GN=tolB PE=3 SV=1
Length = 439
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 107/277 (38%), Gaps = 51/277 (18%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A SDG T+++ + +WSP K + Y S F+ +++ +
Sbjct: 186 LMVADSDGYNPQTIVRSAEPLLSPNWSPDGKKLAYVS----FERGNSSIYL--------- 232
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++I + L G N PS SPDG+ L RSG+ ++V+D + +
Sbjct: 233 ------QDIASGARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLT- 285
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI------ 528
QLT+ IDT P+W+P G I F+S+R + Y + G R+
Sbjct: 286 ---QLTNHFGIDTEPTWAPDGGSIYFTSDRGGRPQI-----YQVAASGGSANRVTFQGNY 337
Query: 529 -----------HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG-----AVMAEPVSW 572
VA +GSG+ R + + L +L A A V +
Sbjct: 338 NATASVSFDGKKVAVAQGSGNTYRIAMMDRSLGSPSWSTLSPGSLDESPSFAPNASMVLY 397
Query: 573 PNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ G LY V D +RL + PAW P
Sbjct: 398 AAREGGRGVLYAVSADARVRQRLVLADGDVREPAWGP 434
>sp|B0RPZ2|TOLB_XANCB Protein TolB OS=Xanthomonas campestris pv. campestris (strain B100)
GN=tolB PE=3 SV=1
Length = 439
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 107/277 (38%), Gaps = 51/277 (18%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A SDG T+++ + +WSP K + Y S F+ +++ +
Sbjct: 186 LMVADSDGYNPQTIVRSAEPLLSPNWSPDGKKLAYVS----FERGNSSIYL--------- 232
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++I + L G N PS SPDG+ L RSG+ ++V+D + +
Sbjct: 233 ------QDIASGARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLT- 285
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI------ 528
QLT+ IDT P+W+P G I F+S+R + Y + G R+
Sbjct: 286 ---QLTNHFGIDTEPTWAPDGGSIYFTSDRGGRPQI-----YQVAASGGSANRVTFQGNY 337
Query: 529 -----------HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG-----AVMAEPVSW 572
VA +GSG+ R + + L +L A A V +
Sbjct: 338 NATASVSFDGKKVAVAQGSGNTYRIAMMDRSLGSPSWSTLSPGSLDESPSFAPNASMVLY 397
Query: 573 PNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ G LY V D +RL + PAW P
Sbjct: 398 AAREGGRGVLYAVSADARVRQRLVLADGDVREPAWGP 434
>sp|Q4UXL2|TOLB_XANC8 Protein TolB OS=Xanthomonas campestris pv. campestris (strain 8004)
GN=tolB PE=3 SV=1
Length = 439
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 107/277 (38%), Gaps = 51/277 (18%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ +A SDG T+++ + +WSP K + Y S F+ +++ +
Sbjct: 186 LMVADSDGYNPQTIVRSAEPLLSPNWSPDGKKLAYVS----FERGNSSIYL--------- 232
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++I + L G N PS SPDG+ L RSG+ ++V+D + +
Sbjct: 233 ------QDIASGARELVSSFRGINGAPSFSPDGRRLALALSRSGNPEIYVMDLGSKQLT- 285
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI------ 528
QLT+ IDT P+W+P G I F+S+R + Y + G R+
Sbjct: 286 ---QLTNHFGIDTEPTWAPDGGSIYFTSDRGGRPQI-----YQVAASGGSANRVTFQGNY 337
Query: 529 -----------HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG-----AVMAEPVSW 572
VA +GSG+ R + + L +L A A V +
Sbjct: 338 NATASVSFDGKKVAVAQGSGNTYRIAMMDRSLGSPSWSTLSPGSLDESPSFAPNASMVLY 397
Query: 573 PNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
+ G LY V D +RL + PAW P
Sbjct: 398 AAREGGRGVLYAVSADARVRQRLVLADGDVREPAWGP 434
>sp|A5UAA5|TOLB_HAEIE Protein TolB OS=Haemophilus influenzae (strain PittEE) GN=tolB PE=3
SV=1
Length = 427
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 46/206 (22%)
Query: 356 IKIAKSDGSKRWTLIKDRTA---FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412
+++A DG ++ I +R+A +WSP + + Y S F+++++ + + ++F
Sbjct: 184 VRVADYDGYNQF--IVNRSAQPIMSPAWSPDGQRLAYVS----FENKKSQLVVQDLNF-- 235
Query: 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
+ + G+N P+ SPDG L F S R G N++V+ A NG
Sbjct: 236 -------------GARKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGA-NG-- 279
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
G QLT G +T P+WSP G+ I F+S+R S V + D SG V G
Sbjct: 280 -GTPTQLTSGAGNNTEPAWSPDGNSILFTSDRSG-------SPQVYRMDASG-GSATVVG 330
Query: 533 PEGSGDVDRERINHVCFSADGEWLLF 558
GS + SADG+ L+
Sbjct: 331 GRGSAQI----------SADGKTLVM 346
Score = 36.2 bits (82), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 32/102 (31%)
Query: 435 TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA-------------------------VN 469
GNN P+ SPDG ++F S RSG ++ +DA +N
Sbjct: 289 AGNNTEPAWSPDGNSILFTSDRSGSPQVYRMDASGGSATVVGGRGSAQISADGKTLVMIN 348
Query: 470 GEFNGDIRQLTDG-------PWIDTMPSWSPKGDLIAFSSNR 504
G N + LT G ++ PS SP G +I +SS +
Sbjct: 349 GNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQ 390
>sp|Q65UN0|TOLB_MANSM Protein TolB OS=Mannheimia succiniciproducens (strain MBEL55E)
GN=tolB PE=3 SV=1
Length = 431
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 24/150 (16%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
I++A DG ++ + + + +WSP K + Y S F++ ++ + +
Sbjct: 187 IRVADYDGFNQFIVNRSSQPIMSPAWSPDGKRLAYVS----FENRKSQLVV--------- 233
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
+++ + + G+N P+ SPDG L F S + G N++V+ A NG G
Sbjct: 234 ------QDLGSGARKVVASFQGHNGAPAFSPDGSRLAFASNKEGQLNIYVMGA-NG---G 283
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
QLT G +T PSWSP G I F+S+R
Sbjct: 284 QPTQLTSGSGNNTEPSWSPDGSSILFTSDR 313
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 71/187 (37%), Gaps = 35/187 (18%)
Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIY 389
NG+ P+FSPDG + F + E I + ++G + L SWSP +++
Sbjct: 251 NGA-PAFSPDGSRLAFASNKEGQLNIYVMGANGGQPTQLTSGSGNNTEPSWSPDGSSILF 309
Query: 390 TSTGPIFQSERATVQIARVSFQ---LDPSDDNNREEIPCDVKILTKEETGNNAF------ 440
TS + Q+ R+S P +I D K L NN
Sbjct: 310 TS------DRGGSPQVYRMSSSGGAASPVGGRGSAQISSDGKTLVMINGNNNVVKQDVTS 363
Query: 441 --------------PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID 486
PS SP+G +++ S + G + L + +G F + TDG
Sbjct: 364 GASEVLSTSFLGESPSLSPNGIMIIYSSTQ-GLGKVLQLVSADGRFKARLPG-TDGQV-- 419
Query: 487 TMPSWSP 493
P+WSP
Sbjct: 420 KFPAWSP 426
Score = 33.1 bits (74), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 32/123 (26%)
Query: 489 PSWSPKGDLIAFSS--NRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINH 546
P+WSP G +A+ S NR S V++ GSG R++ VA +G
Sbjct: 210 PAWSPDGKRLAYVSFENRK--------SQLVVQDLGSGARKV-VASFQGHNGAP------ 254
Query: 547 VCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPA 606
FS DG L F +N + ++YV+ +G +LT N P+
Sbjct: 255 -AFSPDGSRLAFASNKEGQL--------------NIYVMGANGGQPTQLTSGSGNNTEPS 299
Query: 607 WHP 609
W P
Sbjct: 300 WSP 302
>sp|Q3A097|TOLB_PELCD Protein TolB OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd
1) GN=tolB PE=3 SV=1
Length = 443
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 114/296 (38%), Gaps = 94/296 (31%)
Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTS----TGPIFQSERATVQIARVSF 410
+ + +DG+ L R+ N +SP + VIYTS +++ + +T Q AR++F
Sbjct: 194 LYLMDTDGANALRLTDHRSIVLNPDFSPNGREVIYTSYRRGNPDLYRKQLSTGQEARLAF 253
Query: 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG 470
+ G N PDG+ + +G+ L +L G
Sbjct: 254 K-----------------------KGLNIAARFRPDGREIALTQSATGNPELMLL----G 286
Query: 471 EFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH------------------------- 505
R+LT ID PSWSP GD +AF S+R
Sbjct: 287 TDGSRRRRLTSHWGIDVDPSWSPAGDRLAFVSDRQGNPHIFVMDLLGGQTARLTANGKYN 346
Query: 506 -----NPDNVE---------AFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSA 551
+PD F +Y ++PDG+ RR+ G G+ + H +S
Sbjct: 347 ATPAWSPDGKRIAFTRLEKGVFDIYTVRPDGTDERRLTF----GPGNKE-----HPRWSP 397
Query: 552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
D +L+++++ +Y+++ DG+G+RR++ G + PAW
Sbjct: 398 DSRFLVYSSDQDGRKG--------------IYIMRADGTGIRRISAGGGQCQHPAW 439
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 79/204 (38%), Gaps = 39/204 (19%)
Query: 337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGP- 394
F PDG I N + + +DGS+R L + SWSP + + S
Sbjct: 263 FRPDGREIALTQSATGNPELMLLGTDGSRRRRLTSHWGIDVDPSWSPAGDRLAFVSDRQG 322
Query: 395 ---IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451
IF + Q AR++ NA P+ SPDGK +
Sbjct: 323 NPHIFVMDLLGGQTARLT-----------------------ANGKYNATPAWSPDGKRIA 359
Query: 452 FRSGRSGHKNLFVLDAVNGEFNG-DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV 510
F G V D +G D R+LT GP P WSP + +SS++ +
Sbjct: 360 FTRLEKG-----VFDIYTVRPDGTDERRLTFGPGNKEHPRWSPDSRFLVYSSDQDGRKGI 414
Query: 511 EAFSLYVIKPDGSGLRRIHVAGPE 534
Y+++ DG+G+RRI G +
Sbjct: 415 -----YIMRADGTGIRRISAGGGQ 433
Score = 40.8 bits (94), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 82/201 (40%), Gaps = 37/201 (18%)
Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS-NRHNPD 508
+ + R+GHK L+++D + +LTD I P +SP G + ++S R NPD
Sbjct: 182 IAYIDNRTGHKELYLMDTDGA----NALRLTDHRSIVLNPDFSPNGREVIYTSYRRGNPD 237
Query: 509 NVE-----------AFSLYV-----IKPDGS--GLRRIHVAGPE----GSGDVDRERI-N 545
AF + +PDG L + PE G+ R R+ +
Sbjct: 238 LYRKQLSTGQEARLAFKKGLNIAARFRPDGREIALTQSATGNPELMLLGTDGSRRRRLTS 297
Query: 546 HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTP 605
H D W + + +++ + Q ++V+ L G RLT NG N TP
Sbjct: 298 HWGIDVDPSW--------SPAGDRLAFVSDRQGNPHIFVMDLLGGQTARLTANGKYNATP 349
Query: 606 AWHPGNQLDLGKLRLEDDIGD 626
AW P + + RLE + D
Sbjct: 350 AWSPDGK-RIAFTRLEKGVFD 369
>sp|Q2GBD2|TOLB1_NOVAD Protein TolB 1 OS=Novosphingobium aromaticivorans (strain DSM
12444) GN=tolB1 PE=3 SV=1
Length = 451
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 106/259 (40%), Gaps = 54/259 (20%)
Query: 356 IKIAKSDGSK-RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
+ I SDG+ R+ TA +SP K ++Y S + + R + +
Sbjct: 202 LAIMDSDGANHRYLTSGQATALTPRFSPDYKSILYLS----YLNGRPRIYV--------- 248
Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
++ + + L E G P SPDGK++++ +G+ +++ + A G
Sbjct: 249 ------YDLAANTQRLVTETPGPTFAPRWSPDGKWILYSMATAGNTDIYKVPASGGAS-- 300
Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
++LTD P ID S+SP G I F S+R + YV+ DGS RRI G
Sbjct: 301 --QRLTDTPGIDVGGSFSPDGSRIVFESDRSGSQQI-----YVMNADGSDHRRISFFG-- 351
Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR 594
R +S G+ + FT +G + + VV G LR
Sbjct: 352 -------GRAATPEWSPRGDQIAFTHIVGNLR---------------IAVVSPGGGDLRY 389
Query: 595 LTWNGYENGTPAWHPGNQL 613
LT + +++ P W P ++
Sbjct: 390 LT-DSWQDEAPTWSPNGRI 407
Score = 39.7 bits (91), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 74/199 (37%), Gaps = 29/199 (14%)
Query: 335 PSFSPDGGLIVFNHDFELNAGI-KIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTG 393
P +SPDG I+++ N I K+ S G+ + S+SP ++
Sbjct: 269 PRWSPDGKWILYSMATAGNTDIYKVPASGGASQRLTDTPGIDVGGSFSPDGSRIV----- 323
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453
F+S+R+ Q V D SD G A P SP G + F
Sbjct: 324 --FESDRSGSQQIYV-MNADGSDHRRISFF-----------GGRAATPEWSPRGDQIAFT 369
Query: 454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF 513
H + AV GD+R LTD W D P+WSP G +I F
Sbjct: 370 -----HIVGNLRIAVVSPGGGDLRYLTDS-WQDEAPTWSPNGRIIQFFRTEKGSGKA--- 420
Query: 514 SLYVIKPDGSGLRRIHVAG 532
S++ + G RR+ G
Sbjct: 421 SVWQVDLTGRNERRLSTPG 439
Score = 33.1 bits (74), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 31/162 (19%)
Query: 336 SFSPDGGLIVFNHDFELNAGIKIAKSDGS--KRWTLIKDRTAFYNSWSPTEKHVIYTSTG 393
SFSPDG IVF D + I + +DGS +R + R A WSP + +T
Sbjct: 314 SFSPDGSRIVFESDRSGSQQIYVMNADGSDHRRISFFGGRAA-TPEWSPRGDQIAFTHI- 371
Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFL-VF 452
++IA VS P D++ LT ++ + P+ SP+G+ + F
Sbjct: 372 ------VGNLRIAVVS----PGG--------GDLRYLT--DSWQDEAPTWSPNGRIIQFF 411
Query: 453 RSGR-SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
R+ + SG +++ +D G + P + P+W P
Sbjct: 412 RTEKGSGKASVWQVD-----LTGRNERRLSTPGDASDPAWGP 448
>sp|Q6NAR1|TOLB_RHOPA Protein TolB OS=Rhodopseudomonas palustris (strain ATCC BAA-98 /
CGA009) GN=tolB PE=3 SV=1
Length = 444
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 33/173 (19%)
Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
P SPDG+ ++ + G+ NLFV+D + +LTD P IDT PS++P G I F
Sbjct: 261 PRFSPDGQRIIMSLQQGGNSNLFVMDLRSKATT----RLTDTPAIDTSPSYAPDGSRICF 316
Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
S+R + Y++ G +RI +GS + +S G+++ FT
Sbjct: 317 ESDRGGKPQI-----YIMPASGGQAQRISFG--DGS-------YSTPVWSPRGDYIAFTK 362
Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
G A + ++K DGSG R LT +G+ N P + P ++
Sbjct: 363 QGGGQFA--------------IGIMKPDGSGERILT-SGFHNEGPTFAPNGRV 400
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 39 LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA 98
LT G+ + +F +Q I ++ G PR+Y + + E++ + P F R +
Sbjct: 207 LTRGSDLVLTPRFSP-TNQEITYMEFGQGEPRVYLFNVETGQREIVGNFPGMSFAPR-FS 264
Query: 99 RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVAS 158
+ + +S + + S L+ DL++ TRLT +D SPS + G I S
Sbjct: 265 PDGQRIIMSLQQGGN------SNLFVMDLRSKATTRLTDTPAIDTSPSYAPDGSRICFES 318
>sp|A5UGQ1|TOLB_HAEIG Protein TolB OS=Haemophilus influenzae (strain PittGG) GN=tolB PE=3
SV=1
Length = 427
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 46/206 (22%)
Query: 356 IKIAKSDGSKRWTLIKDRTA---FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412
+++A DG ++ I +R+A +WSP + + Y S F+++++ + +
Sbjct: 184 VRVADYDGYNQF--IVNRSAQPIMSPAWSPDGQRLAYVS----FENKKSQLVV------- 230
Query: 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472
+++ + + G+N P+ SPDG L F S R G N++V+ A NG
Sbjct: 231 --------QDLNSGSRKVVASFQGHNGAPAFSPDGSRLAFASSRDGVLNIYVMGA-NG-- 279
Query: 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532
G QLT G +T P+WSP G+ I F+S+R S V + D SG V G
Sbjct: 280 -GTPTQLTSGAGNNTEPAWSPDGNSILFTSDRSG-------SPQVYRMDASGGNATAVGG 331
Query: 533 PEGSGDVDRERINHVCFSADGEWLLF 558
GS + SADG+ L+
Sbjct: 332 -RGSAQI----------SADGKTLVM 346
Score = 36.6 bits (83), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 32/102 (31%)
Query: 435 TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA-------------------------VN 469
GNN P+ SPDG ++F S RSG ++ +DA +N
Sbjct: 289 AGNNTEPAWSPDGNSILFTSDRSGSPQVYRMDASGGNATAVGGRGSAQISADGKTLVMIN 348
Query: 470 GEFNGDIRQLTDG-------PWIDTMPSWSPKGDLIAFSSNR 504
G N + LT G ++ PS SP G +I +SS +
Sbjct: 349 GNNNVVKQDLTTGVSEVLSTSFLGESPSLSPNGIMIIYSSTQ 390
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 271,923,119
Number of Sequences: 539616
Number of extensions: 12697604
Number of successful extensions: 24438
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 141
Number of HSP's that attempted gapping in prelim test: 21388
Number of HSP's gapped (non-prelim): 1946
length of query: 642
length of database: 191,569,459
effective HSP length: 124
effective length of query: 518
effective length of database: 124,657,075
effective search space: 64572364850
effective search space used: 64572364850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)