Query 039497
Match_columns 642
No_of_seqs 299 out of 3363
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 10:17:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4946 Uncharacterized protei 100.0 3.2E-30 6.9E-35 246.3 37.1 447 3-563 49-510 (668)
2 COG4946 Uncharacterized protei 100.0 1.1E-26 2.4E-31 222.2 37.8 437 95-631 45-521 (668)
3 PRK01029 tolB translocation pr 100.0 1.4E-25 2.9E-30 232.6 32.5 257 311-611 165-426 (428)
4 PRK01029 tolB translocation pr 99.9 4.9E-25 1.1E-29 228.5 29.6 265 4-384 146-426 (428)
5 PRK03629 tolB translocation pr 99.9 1.4E-24 2.9E-29 226.3 32.1 246 312-609 180-427 (429)
6 PRK02889 tolB translocation pr 99.9 3.1E-24 6.8E-29 223.9 31.6 226 333-610 199-425 (427)
7 PRK05137 tolB translocation pr 99.9 3.5E-24 7.6E-29 224.8 31.5 228 332-609 204-432 (435)
8 PRK04043 tolB translocation pr 99.9 6.6E-24 1.4E-28 218.3 31.9 248 311-607 169-419 (419)
9 PRK04792 tolB translocation pr 99.9 7.9E-24 1.7E-28 221.4 32.7 225 333-609 221-446 (448)
10 PRK03629 tolB translocation pr 99.9 4.9E-24 1.1E-28 222.1 30.7 259 5-382 164-427 (429)
11 PRK04922 tolB translocation pr 99.9 1.3E-23 2.8E-28 220.2 31.2 225 333-609 207-432 (433)
12 PRK00178 tolB translocation pr 99.9 2E-23 4.3E-28 219.6 31.6 226 333-610 202-428 (430)
13 PRK05137 tolB translocation pr 99.9 4.7E-23 1E-27 216.3 30.5 241 4-276 165-411 (435)
14 KOG0318 WD40 repeat stress pro 99.9 2.4E-20 5.2E-25 181.4 44.2 491 3-614 29-588 (603)
15 PRK04043 tolB translocation pr 99.9 1.1E-22 2.3E-27 209.3 29.0 238 5-276 155-399 (419)
16 PRK01742 tolB translocation pr 99.9 3.8E-22 8.2E-27 208.6 31.3 219 333-610 207-426 (429)
17 PRK02889 tolB translocation pr 99.9 3E-22 6.6E-27 209.0 29.7 229 342-622 164-393 (427)
18 PRK04792 tolB translocation pr 99.9 9.5E-22 2.1E-26 205.7 30.3 228 342-621 183-414 (448)
19 PRK04922 tolB translocation pr 99.9 1.6E-21 3.4E-26 204.5 29.1 228 342-621 168-400 (433)
20 PRK00178 tolB translocation pr 99.9 2.8E-21 6E-26 203.4 29.8 228 342-621 163-395 (430)
21 KOG0291 WD40-repeat-containing 99.9 4.2E-19 9.1E-24 179.7 43.5 469 39-618 10-601 (893)
22 PRK01742 tolB translocation pr 99.9 4.6E-21 9.9E-26 200.5 29.9 254 4-383 168-426 (429)
23 KOG0271 Notchless-like WD40 re 99.9 6.5E-21 1.4E-25 178.2 23.2 329 122-562 98-472 (480)
24 TIGR02800 propeller_TolB tol-p 99.9 5.5E-20 1.2E-24 193.4 31.5 224 333-608 193-417 (417)
25 KOG0318 WD40 repeat stress pro 99.9 1.5E-18 3.2E-23 169.1 37.1 392 147-617 26-548 (603)
26 PF00930 DPPIV_N: Dipeptidyl p 99.9 1E-18 2.2E-23 177.9 31.3 330 148-563 1-349 (353)
27 KOG0271 Notchless-like WD40 re 99.8 6.3E-20 1.4E-24 171.7 19.3 321 216-618 97-470 (480)
28 TIGR02800 propeller_TolB tol-p 99.8 7.3E-19 1.6E-23 184.9 28.8 229 341-621 155-386 (417)
29 COG0823 TolB Periplasmic compo 99.8 4E-19 8.6E-24 181.1 24.3 225 333-609 196-423 (425)
30 COG0823 TolB Periplasmic compo 99.8 2.3E-18 5E-23 175.6 21.8 219 351-621 170-391 (425)
31 KOG0291 WD40-repeat-containing 99.8 2.6E-15 5.7E-20 152.6 41.5 462 2-561 64-602 (893)
32 PF14583 Pectate_lyase22: Olig 99.8 1.2E-15 2.5E-20 148.7 33.7 323 18-468 10-383 (386)
33 PF00930 DPPIV_N: Dipeptidyl p 99.7 4.6E-16 1E-20 158.4 25.7 241 332-617 45-345 (353)
34 KOG0315 G-protein beta subunit 99.7 2.7E-15 5.9E-20 133.2 24.3 265 204-563 11-280 (311)
35 PF14583 Pectate_lyase22: Olig 99.7 3.5E-15 7.5E-20 145.5 27.3 328 121-521 12-383 (386)
36 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 8.1E-14 1.8E-18 139.6 35.5 289 204-609 3-300 (300)
37 KOG0272 U4/U6 small nuclear ri 99.7 1.4E-15 3E-20 144.8 20.7 267 143-506 179-453 (459)
38 KOG0315 G-protein beta subunit 99.7 4.9E-15 1.1E-19 131.6 19.9 225 333-621 44-280 (311)
39 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 3.5E-13 7.7E-18 135.0 36.0 265 174-527 12-285 (300)
40 KOG0286 G-protein beta subunit 99.7 3E-14 6.5E-19 129.6 24.9 271 278-617 52-333 (343)
41 KOG0272 U4/U6 small nuclear ri 99.6 1.2E-14 2.5E-19 138.6 17.8 264 244-564 177-453 (459)
42 KOG0279 G protein beta subunit 99.6 2E-13 4.2E-18 123.6 24.4 225 334-621 68-305 (315)
43 COG2706 3-carboxymuconate cycl 99.6 2.8E-12 6.1E-17 121.3 31.3 285 267-598 14-333 (346)
44 cd00200 WD40 WD40 domain, foun 99.6 3.5E-13 7.6E-18 133.1 27.2 267 238-563 5-283 (289)
45 KOG0319 WD40-repeat-containing 99.6 3.8E-12 8.1E-17 129.8 33.8 428 122-641 86-566 (775)
46 cd00200 WD40 WD40 domain, foun 99.6 6.1E-13 1.3E-17 131.5 27.1 272 281-621 9-283 (289)
47 KOG0273 Beta-transducin family 99.6 7.1E-13 1.5E-17 128.2 25.9 300 196-563 184-515 (524)
48 KOG4497 Uncharacterized conser 99.6 1.1E-13 2.4E-18 127.8 19.4 341 144-617 13-420 (447)
49 KOG2096 WD40 repeat protein [G 99.6 3.3E-13 7.1E-18 124.2 22.3 279 237-562 81-394 (420)
50 PRK11028 6-phosphogluconolacto 99.6 6.5E-12 1.4E-16 127.5 34.6 194 334-562 84-294 (330)
51 KOG0293 WD40 repeat-containing 99.6 9.1E-14 2E-18 132.0 18.2 277 130-504 215-503 (519)
52 COG2706 3-carboxymuconate cycl 99.6 1.8E-11 3.9E-16 115.9 33.2 284 121-481 19-332 (346)
53 KOG0293 WD40 repeat-containing 99.6 4.4E-14 9.6E-19 134.1 15.2 268 236-564 218-505 (519)
54 KOG0279 G protein beta subunit 99.6 1.2E-12 2.6E-17 118.6 23.4 272 244-565 17-307 (315)
55 KOG2314 Translation initiation 99.6 5.3E-12 1.1E-16 124.6 28.7 335 142-524 213-576 (698)
56 KOG0296 Angio-associated migra 99.6 6E-12 1.3E-16 118.2 27.5 278 131-506 98-391 (399)
57 KOG0273 Beta-transducin family 99.6 8.6E-13 1.9E-17 127.7 22.4 264 195-520 240-522 (524)
58 PF10282 Lactonase: Lactonase, 99.6 1.8E-11 3.9E-16 124.3 33.0 220 334-596 91-332 (345)
59 KOG0263 Transcription initiati 99.5 1.8E-13 3.9E-18 140.7 17.8 268 142-522 381-650 (707)
60 KOG1407 WD40 repeat protein [F 99.5 4.4E-12 9.5E-17 113.9 23.4 275 37-393 14-293 (313)
61 PF10282 Lactonase: Lactonase, 99.5 6.9E-12 1.5E-16 127.4 28.3 295 173-530 13-333 (345)
62 KOG0319 WD40-repeat-containing 99.5 3E-11 6.5E-16 123.4 32.1 458 3-562 115-610 (775)
63 KOG0286 G-protein beta subunit 99.5 4.8E-11 1E-15 109.0 29.4 270 196-563 61-337 (343)
64 PRK11028 6-phosphogluconolacto 99.5 8.6E-11 1.9E-15 119.3 35.1 277 121-471 13-309 (330)
65 KOG2055 WD40 repeat protein [G 99.5 2.7E-12 5.9E-17 124.0 21.9 284 195-563 218-504 (514)
66 KOG0266 WD40 repeat-containing 99.5 6.9E-12 1.5E-16 131.9 25.1 228 333-618 207-441 (456)
67 KOG0266 WD40 repeat-containing 99.5 9E-12 1.9E-16 131.1 25.3 267 143-504 163-443 (456)
68 KOG2048 WD40 repeat protein [G 99.5 9.9E-10 2.2E-14 111.5 37.8 470 39-610 21-528 (691)
69 KOG1446 Histone H3 (Lys4) meth 99.5 2.9E-10 6.2E-15 105.5 30.8 272 195-561 19-293 (311)
70 KOG2314 Translation initiation 99.5 5.5E-11 1.2E-15 117.6 27.5 336 195-632 215-570 (698)
71 KOG0306 WD40-repeat-containing 99.5 4.3E-10 9.2E-15 115.3 34.4 231 335-619 418-654 (888)
72 KOG1407 WD40 repeat protein [F 99.5 2.8E-11 6E-16 108.8 22.3 220 333-617 68-290 (313)
73 KOG0306 WD40-repeat-containing 99.5 1.9E-09 4.1E-14 110.6 38.3 471 45-621 67-614 (888)
74 KOG2096 WD40 repeat protein [G 99.5 2.3E-11 4.9E-16 112.3 21.9 281 135-504 82-394 (420)
75 KOG0772 Uncharacterized conser 99.4 1.5E-11 3.3E-16 120.4 20.7 301 237-621 162-480 (641)
76 KOG0296 Angio-associated migra 99.4 5.7E-11 1.2E-15 111.8 23.8 308 236-621 58-390 (399)
77 KOG0263 Transcription initiati 99.4 1.1E-11 2.4E-16 127.7 19.1 187 372-618 451-638 (707)
78 TIGR02658 TTQ_MADH_Hv methylam 99.4 3.5E-09 7.6E-14 104.8 35.6 293 215-595 27-338 (352)
79 KOG1539 WD repeat protein [Gen 99.4 2.2E-09 4.9E-14 111.4 34.5 367 121-563 225-639 (910)
80 KOG0973 Histone transcription 99.4 5.6E-11 1.2E-15 126.9 23.4 243 333-635 73-357 (942)
81 KOG4497 Uncharacterized conser 99.4 7.3E-11 1.6E-15 109.4 21.0 356 121-563 30-424 (447)
82 KOG0284 Polyadenylation factor 99.4 3.2E-12 6.9E-17 121.6 11.1 223 333-617 142-368 (464)
83 KOG1063 RNA polymerase II elon 99.4 3.3E-09 7.2E-14 108.0 32.3 524 2-617 23-636 (764)
84 KOG0973 Histone transcription 99.4 1.8E-10 3.9E-15 123.1 24.4 299 197-563 20-347 (942)
85 KOG1446 Histone H3 (Lys4) meth 99.4 1.3E-09 2.8E-14 101.2 26.6 274 241-617 13-293 (311)
86 PF08662 eIF2A: Eukaryotic tra 99.4 5.9E-11 1.3E-15 109.2 18.0 164 334-526 10-184 (194)
87 KOG0265 U5 snRNP-specific prot 99.3 7.9E-10 1.7E-14 101.6 24.3 279 135-506 43-331 (338)
88 PLN00181 protein SPA1-RELATED; 99.3 1.3E-09 2.7E-14 123.8 31.1 225 334-621 537-785 (793)
89 PLN00181 protein SPA1-RELATED; 99.3 1.9E-09 4.2E-14 122.3 31.8 285 138-520 482-792 (793)
90 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.7E-08 3.7E-13 100.0 33.7 287 120-480 27-339 (352)
91 KOG0265 U5 snRNP-specific prot 99.3 4E-10 8.6E-15 103.5 20.1 282 236-619 41-328 (338)
92 KOG0305 Anaphase promoting com 99.3 7E-10 1.5E-14 112.5 23.5 259 121-469 198-462 (484)
93 KOG0645 WD40 repeat protein [G 99.3 3.8E-09 8.3E-14 95.8 25.5 275 135-505 10-303 (312)
94 PF02239 Cytochrom_D1: Cytochr 99.3 1.1E-09 2.4E-14 111.1 25.0 324 172-596 15-356 (369)
95 KOG2048 WD40 repeat protein [G 99.3 4.3E-08 9.3E-13 99.9 35.4 166 372-592 382-552 (691)
96 KOG2055 WD40 repeat protein [G 99.3 1.7E-10 3.7E-15 111.8 17.0 227 333-615 217-451 (514)
97 KOG0305 Anaphase promoting com 99.3 9.1E-10 2E-14 111.7 22.9 269 195-564 182-454 (484)
98 COG5354 Uncharacterized protei 99.3 4.1E-09 9E-14 103.7 26.5 328 142-526 35-400 (561)
99 KOG1274 WD40 repeat protein [G 99.3 7.7E-10 1.7E-14 116.1 22.7 213 337-613 62-284 (933)
100 PF02239 Cytochrom_D1: Cytochr 99.3 2E-08 4.3E-13 102.0 31.9 317 121-528 17-354 (369)
101 PTZ00421 coronin; Provisional 99.2 9.5E-09 2.1E-13 108.0 30.0 206 333-595 79-297 (493)
102 KOG0275 Conserved WD40 repeat- 99.2 1.9E-10 4.1E-15 106.3 13.7 227 333-619 217-457 (508)
103 KOG0643 Translation initiation 99.2 7.8E-09 1.7E-13 93.6 23.5 272 196-564 16-309 (327)
104 KOG0284 Polyadenylation factor 99.2 1.5E-10 3.3E-15 110.4 13.2 264 244-563 98-372 (464)
105 KOG2315 Predicted translation 99.2 2.4E-08 5.3E-13 99.7 29.0 321 121-523 56-392 (566)
106 PF08662 eIF2A: Eukaryotic tra 99.2 1.8E-09 3.9E-14 99.4 19.6 175 376-595 9-186 (194)
107 PTZ00421 coronin; Provisional 99.2 5.1E-09 1.1E-13 110.0 25.4 199 372-617 75-277 (493)
108 KOG2106 Uncharacterized conser 99.2 2E-07 4.4E-12 91.8 34.2 183 333-560 411-615 (626)
109 KOG2315 Predicted translation 99.2 3.2E-08 6.9E-13 98.9 28.6 315 245-617 37-372 (566)
110 KOG0639 Transducin-like enhanc 99.2 3.1E-10 6.8E-15 110.9 14.3 245 335-642 425-682 (705)
111 KOG0772 Uncharacterized conser 99.2 6.8E-09 1.5E-13 102.1 23.2 199 334-564 273-480 (641)
112 PF02897 Peptidase_S9_N: Proly 99.2 2.8E-08 6.1E-13 104.3 29.9 260 247-530 128-413 (414)
113 KOG0645 WD40 repeat protein [G 99.2 7.6E-09 1.6E-13 93.9 21.1 192 334-565 19-219 (312)
114 PTZ00420 coronin; Provisional 99.2 2.7E-08 5.9E-13 105.2 28.9 221 333-612 78-319 (568)
115 KOG0282 mRNA splicing factor [ 99.2 1.6E-09 3.4E-14 105.8 17.8 274 195-564 219-497 (503)
116 KOG0292 Vesicle coat complex C 99.2 1E-06 2.2E-11 92.7 38.3 460 36-616 44-545 (1202)
117 KOG0275 Conserved WD40 repeat- 99.2 7.8E-10 1.7E-14 102.3 14.0 280 244-621 215-501 (508)
118 KOG0282 mRNA splicing factor [ 99.1 1.2E-09 2.6E-14 106.7 15.8 225 333-618 262-494 (503)
119 KOG1445 Tumor-specific antigen 99.1 1.1E-07 2.4E-12 96.0 29.6 232 337-617 587-832 (1012)
120 PRK10115 protease 2; Provision 99.1 1.9E-07 4.1E-12 102.9 34.5 258 245-531 129-404 (686)
121 KOG0643 Translation initiation 99.1 3.5E-08 7.6E-13 89.5 23.0 235 337-621 60-309 (327)
122 PTZ00420 coronin; Provisional 99.1 7.9E-08 1.7E-12 101.8 28.5 256 251-553 35-318 (568)
123 COG5354 Uncharacterized protei 99.1 4.7E-08 1E-12 96.5 23.9 313 241-617 31-377 (561)
124 KOG1274 WD40 repeat protein [G 99.1 1.5E-08 3.4E-13 106.5 21.1 231 334-621 18-254 (933)
125 KOG2106 Uncharacterized conser 99.1 1.1E-06 2.3E-11 86.8 31.5 140 436-617 369-509 (626)
126 KOG1539 WD repeat protein [Gen 99.0 1.6E-06 3.4E-11 90.8 33.8 190 373-622 449-640 (910)
127 KOG0640 mRNA cleavage stimulat 99.0 1.3E-08 2.9E-13 93.9 16.4 273 234-562 104-417 (430)
128 KOG0283 WD40 repeat-containing 99.0 3.1E-08 6.7E-13 103.6 21.1 196 334-589 374-577 (712)
129 KOG0295 WD40 repeat-containing 99.0 2.9E-08 6.3E-13 93.8 17.9 221 334-617 155-394 (406)
130 KOG1063 RNA polymerase II elon 99.0 1.4E-07 2.9E-12 96.5 24.0 120 428-563 519-640 (764)
131 KOG2139 WD40 repeat protein [G 99.0 4.6E-08 9.9E-13 92.4 19.2 233 333-618 102-364 (445)
132 KOG0640 mRNA cleavage stimulat 99.0 3.1E-08 6.7E-13 91.5 16.9 284 131-504 104-417 (430)
133 KOG0310 Conserved WD40 repeat- 99.0 3.9E-08 8.4E-13 96.5 18.3 228 333-621 72-301 (487)
134 KOG0295 WD40 repeat-containing 99.0 5.1E-08 1.1E-12 92.2 17.7 258 196-503 114-396 (406)
135 KOG0277 Peroxisomal targeting 99.0 3.9E-08 8.4E-13 88.6 15.9 236 330-621 9-256 (311)
136 PF08450 SGL: SMP-30/Gluconola 98.9 2.1E-07 4.6E-12 90.0 22.2 222 334-618 4-245 (246)
137 PRK13616 lipoprotein LpqB; Pro 98.9 1.1E-07 2.4E-12 101.8 21.5 170 373-597 350-536 (591)
138 KOG0639 Transducin-like enhanc 98.9 6E-08 1.3E-12 95.3 17.0 266 197-563 426-696 (705)
139 KOG1273 WD40 repeat protein [G 98.9 5.2E-07 1.1E-11 83.9 21.7 267 194-501 27-311 (405)
140 KOG2139 WD40 repeat protein [G 98.9 1E-06 2.2E-11 83.6 23.0 171 333-528 199-390 (445)
141 PF06433 Me-amine-dh_H: Methyl 98.9 2.5E-06 5.4E-11 82.6 26.0 220 333-597 98-329 (342)
142 KOG0278 Serine/threonine kinas 98.9 5.5E-08 1.2E-12 87.3 13.6 184 334-565 105-291 (334)
143 PF07433 DUF1513: Protein of u 98.9 2.1E-06 4.5E-11 82.2 25.0 239 334-619 9-276 (305)
144 KOG0289 mRNA splicing factor [ 98.8 2.1E-07 4.5E-12 90.1 17.8 215 354-635 241-462 (506)
145 KOG0276 Vesicle coat complex C 98.8 6.8E-05 1.5E-09 76.4 36.0 228 38-304 8-250 (794)
146 KOG0276 Vesicle coat complex C 98.8 5.2E-05 1.1E-09 77.2 34.7 418 17-562 33-482 (794)
147 PRK13616 lipoprotein LpqB; Pro 98.8 3.2E-07 7E-12 98.3 20.6 169 333-528 353-534 (591)
148 KOG2919 Guanine nucleotide-bin 98.8 5.2E-07 1.1E-11 84.2 18.5 182 334-560 163-359 (406)
149 KOG0283 WD40 repeat-containing 98.8 3.5E-07 7.5E-12 95.9 18.9 289 41-410 265-577 (712)
150 KOG0292 Vesicle coat complex C 98.8 5.9E-05 1.3E-09 79.9 34.5 453 42-614 8-504 (1202)
151 KOG0288 WD40 repeat protein Ti 98.8 9.5E-08 2.1E-12 91.8 13.1 229 334-620 180-452 (459)
152 KOG0289 mRNA splicing factor [ 98.8 1.7E-06 3.6E-11 84.0 21.4 223 335-619 267-496 (506)
153 KOG1524 WD40 repeat-containing 98.8 5.5E-06 1.2E-10 82.5 25.1 132 139-304 145-279 (737)
154 PF02897 Peptidase_S9_N: Proly 98.8 1.1E-05 2.3E-10 84.9 29.5 266 288-596 130-412 (414)
155 KOG4378 Nuclear protein COP1 [ 98.8 1.2E-06 2.6E-11 86.3 20.0 210 353-621 100-314 (673)
156 KOG0771 Prolactin regulatory e 98.7 2.6E-07 5.7E-12 89.4 15.0 191 334-563 149-346 (398)
157 PF04762 IKI3: IKI3 family; I 98.7 0.00023 4.9E-09 80.9 40.7 112 143-276 213-332 (928)
158 KOG2919 Guanine nucleotide-bin 98.7 2.9E-06 6.4E-11 79.3 20.7 199 338-591 120-331 (406)
159 KOG1273 WD40 repeat protein [G 98.7 4.3E-06 9.4E-11 77.9 21.4 271 245-617 26-311 (405)
160 KOG0771 Prolactin regulatory e 98.7 2.4E-07 5.1E-12 89.7 13.8 183 376-616 148-341 (398)
161 KOG0316 Conserved WD40 repeat- 98.7 6.1E-06 1.3E-10 73.8 21.0 218 336-616 66-287 (307)
162 KOG0288 WD40 repeat protein Ti 98.7 2.2E-07 4.7E-12 89.4 12.9 263 242-563 175-453 (459)
163 PLN02919 haloacid dehalogenase 98.7 9E-06 2E-10 93.8 28.0 234 334-619 572-878 (1057)
164 KOG0310 Conserved WD40 repeat- 98.7 3.1E-06 6.8E-11 83.4 20.4 261 244-564 28-302 (487)
165 PF08450 SGL: SMP-30/Gluconola 98.7 1.9E-05 4.1E-10 76.4 26.1 186 336-561 46-245 (246)
166 KOG0278 Serine/threonine kinas 98.7 1.6E-07 3.4E-12 84.4 10.3 188 372-621 100-289 (334)
167 KOG1408 WD40 repeat protein [F 98.7 5.3E-06 1.2E-10 85.4 22.1 230 331-620 461-704 (1080)
168 PRK10115 protease 2; Provision 98.7 1.1E-05 2.5E-10 89.0 26.7 218 334-596 131-354 (686)
169 KOG0641 WD40 repeat protein [G 98.6 2.1E-05 4.6E-10 69.8 22.0 236 333-617 36-291 (350)
170 KOG4328 WD40 protein [Function 98.6 1.9E-05 4.1E-10 77.4 23.6 301 185-589 181-496 (498)
171 COG3386 Gluconolactonase [Carb 98.6 3.3E-05 7.2E-10 75.8 25.5 231 333-622 28-279 (307)
172 KOG2110 Uncharacterized conser 98.6 5.1E-06 1.1E-10 79.2 18.9 180 342-564 57-241 (391)
173 KOG0641 WD40 repeat protein [G 98.6 2.5E-05 5.3E-10 69.4 21.6 232 280-563 88-341 (350)
174 COG1770 PtrB Protease II [Amin 98.6 0.00052 1.1E-08 71.8 34.4 261 244-531 130-406 (682)
175 KOG0313 Microtubule binding pr 98.6 3.5E-05 7.6E-10 73.8 23.0 297 139-505 105-410 (423)
176 KOG1009 Chromatin assembly com 98.5 2.2E-05 4.9E-10 75.8 21.1 101 334-456 70-186 (434)
177 KOG0264 Nucleosome remodeling 98.5 2E-05 4.4E-10 77.2 20.5 200 374-620 179-394 (422)
178 KOG0650 WD40 repeat nucleolar 98.5 2.3E-05 5E-10 79.3 20.9 132 333-492 525-659 (733)
179 KOG0299 U3 snoRNP-associated p 98.5 3.3E-05 7.1E-10 75.9 20.6 228 334-617 207-443 (479)
180 PF04762 IKI3: IKI3 family; I 98.5 0.00085 1.8E-08 76.3 35.2 69 333-409 260-333 (928)
181 KOG0264 Nucleosome remodeling 98.5 5.3E-05 1.1E-09 74.4 21.9 196 332-565 180-397 (422)
182 KOG1009 Chromatin assembly com 98.5 7.7E-05 1.7E-09 72.2 22.6 138 17-207 36-182 (434)
183 KOG0650 WD40 repeat nucleolar 98.5 1.4E-05 3.1E-10 80.8 18.3 308 240-621 398-727 (733)
184 KOG0316 Conserved WD40 repeat- 98.4 1.3E-05 2.7E-10 71.9 15.8 185 372-617 17-201 (307)
185 KOG4378 Nuclear protein COP1 [ 98.4 6.5E-05 1.4E-09 74.4 22.2 175 336-553 128-305 (673)
186 KOG0294 WD40 repeat-containing 98.4 2.3E-05 4.9E-10 73.3 18.0 220 252-523 51-283 (362)
187 PF07433 DUF1513: Protein of u 98.4 0.00029 6.2E-09 67.8 26.0 253 144-469 9-286 (305)
188 KOG0299 U3 snoRNP-associated p 98.4 3.1E-05 6.7E-10 76.0 19.7 227 138-455 201-445 (479)
189 KOG0303 Actin-binding protein 98.4 1.8E-05 3.8E-10 76.2 17.5 225 341-614 44-278 (472)
190 PLN02919 haloacid dehalogenase 98.4 0.00029 6.3E-09 81.6 30.7 207 333-592 627-892 (1057)
191 KOG1445 Tumor-specific antigen 98.4 3.4E-06 7.3E-11 85.6 12.4 189 333-560 631-832 (1012)
192 PRK02888 nitrous-oxide reducta 98.4 0.00017 3.8E-09 75.7 25.1 193 336-589 199-405 (635)
193 KOG0313 Microtubule binding pr 98.4 0.00015 3.3E-09 69.6 22.4 150 372-562 260-409 (423)
194 KOG1524 WD40 repeat-containing 98.4 1.3E-05 2.9E-10 79.9 15.9 169 334-563 109-278 (737)
195 COG3386 Gluconolactonase [Carb 98.4 0.00035 7.6E-09 68.7 25.9 179 354-564 85-278 (307)
196 PF10647 Gmad1: Lipoprotein Lp 98.4 7.2E-05 1.6E-09 72.1 20.7 158 45-225 25-199 (253)
197 KOG0277 Peroxisomal targeting 98.4 1.2E-05 2.5E-10 73.0 13.6 219 334-610 65-289 (311)
198 KOG1007 WD repeat protein TSSC 98.4 0.00014 3E-09 67.4 20.6 144 333-505 127-280 (370)
199 KOG0285 Pleiotropic regulator 98.3 5.4E-05 1.2E-09 72.0 18.4 271 239-564 148-432 (460)
200 PF06433 Me-amine-dh_H: Methyl 98.3 0.0021 4.5E-08 62.7 29.2 127 334-480 188-329 (342)
201 KOG0307 Vesicle coat complex C 98.3 5.3E-06 1.2E-10 90.2 12.5 288 145-505 12-319 (1049)
202 KOG4283 Transcription-coupled 98.3 0.00038 8.3E-09 64.7 22.5 160 334-525 106-280 (397)
203 KOG0268 Sof1-like rRNA process 98.3 1.8E-05 3.8E-10 75.4 13.7 170 354-565 167-339 (433)
204 TIGR02171 Fb_sc_TIGR02171 Fibr 98.3 5.2E-05 1.1E-09 82.2 19.0 134 4-152 318-464 (912)
205 KOG1538 Uncharacterized conser 98.3 5.2E-05 1.1E-09 77.7 17.9 216 334-617 58-281 (1081)
206 KOG0269 WD40 repeat-containing 98.3 2.9E-05 6.2E-10 81.0 16.3 201 334-590 92-298 (839)
207 PF10647 Gmad1: Lipoprotein Lp 98.3 0.00039 8.4E-09 67.1 23.2 172 333-529 27-205 (253)
208 KOG1538 Uncharacterized conser 98.3 6.7E-05 1.4E-09 76.9 18.2 255 195-506 17-286 (1081)
209 KOG0268 Sof1-like rRNA process 98.3 1.4E-05 3.1E-10 76.0 12.5 169 400-621 166-337 (433)
210 KOG2394 WD40 protein DMR-N9 [G 98.3 6.3E-05 1.4E-09 75.4 17.4 140 243-410 220-363 (636)
211 KOG1332 Vesicle coat complex C 98.2 0.00011 2.5E-09 66.4 17.1 211 121-363 36-289 (299)
212 KOG1332 Vesicle coat complex C 98.2 0.00031 6.8E-09 63.6 19.8 188 340-563 69-278 (299)
213 PF07676 PD40: WD40-like Beta 98.2 1.7E-06 3.7E-11 56.3 4.2 36 37-73 2-39 (39)
214 KOG1963 WD40 repeat protein [G 98.2 0.0026 5.7E-08 67.9 29.2 153 334-522 165-323 (792)
215 KOG0647 mRNA export protein (c 98.2 0.00075 1.6E-08 63.1 21.9 267 195-505 32-315 (347)
216 KOG0307 Vesicle coat complex C 98.2 7.7E-06 1.7E-10 89.0 10.2 230 333-619 68-316 (1049)
217 PRK02888 nitrous-oxide reducta 98.2 0.0014 3E-08 69.1 26.0 250 250-530 200-483 (635)
218 KOG1523 Actin-related protein 98.1 0.00019 4.1E-09 67.5 17.0 199 334-563 15-228 (361)
219 KOG2110 Uncharacterized conser 98.1 0.00025 5.5E-09 68.0 18.0 144 342-519 98-248 (391)
220 KOG0294 WD40 repeat-containing 98.1 0.00023 5E-09 66.8 17.3 215 339-621 51-273 (362)
221 KOG1408 WD40 repeat protein [F 98.1 9.4E-05 2E-09 76.5 16.1 116 372-521 596-713 (1080)
222 KOG0308 Conserved WD40 repeat- 98.1 0.00011 2.4E-09 75.3 15.8 244 200-530 35-295 (735)
223 KOG0646 WD40 repeat protein [G 98.1 0.00021 4.5E-09 70.6 16.9 211 353-621 60-299 (476)
224 KOG1523 Actin-related protein 98.1 0.00041 9E-09 65.3 17.9 160 334-525 60-240 (361)
225 KOG0646 WD40 repeat protein [G 98.1 0.0003 6.4E-09 69.5 17.8 222 334-607 86-327 (476)
226 COG3391 Uncharacterized conser 98.1 0.0024 5.2E-08 65.8 25.7 225 335-615 36-268 (381)
227 KOG2394 WD40 protein DMR-N9 [G 98.1 4.6E-05 9.9E-10 76.3 12.2 64 484-563 291-354 (636)
228 KOG1036 Mitotic spindle checkp 98.1 0.0043 9.3E-08 58.4 24.1 288 142-521 16-316 (323)
229 COG1506 DAP2 Dipeptidyl aminop 98.0 0.0058 1.3E-07 67.3 29.5 288 245-587 15-343 (620)
230 TIGR02171 Fb_sc_TIGR02171 Fibr 98.0 0.00084 1.8E-08 73.2 21.2 137 100-261 318-469 (912)
231 KOG0647 mRNA export protein (c 98.0 0.002 4.3E-08 60.4 20.2 257 46-348 30-312 (347)
232 KOG1963 WD40 repeat protein [G 97.9 0.048 1E-06 58.7 38.0 112 281-408 205-321 (792)
233 KOG0285 Pleiotropic regulator 97.9 0.00031 6.7E-09 67.0 14.2 186 372-617 151-337 (460)
234 KOG0303 Actin-binding protein 97.9 0.0019 4E-08 62.7 19.4 197 279-505 79-285 (472)
235 COG1506 DAP2 Dipeptidyl aminop 97.9 0.01 2.2E-07 65.4 27.7 293 284-621 15-332 (620)
236 KOG1007 WD repeat protein TSSC 97.9 0.00071 1.5E-08 62.8 14.9 204 372-617 63-277 (370)
237 KOG0300 WD40 repeat-containing 97.8 0.0018 4E-08 60.7 17.8 200 36-276 183-385 (481)
238 KOG0269 WD40 repeat-containing 97.8 0.00026 5.6E-09 74.2 13.5 195 375-624 90-289 (839)
239 KOG4283 Transcription-coupled 97.8 0.00087 1.9E-08 62.4 15.4 147 436-617 102-264 (397)
240 KOG1036 Mitotic spindle checkp 97.8 0.0065 1.4E-07 57.2 20.8 219 336-615 61-290 (323)
241 COG3391 Uncharacterized conser 97.8 0.018 3.9E-07 59.4 26.5 205 334-593 78-288 (381)
242 KOG4328 WD40 protein [Function 97.8 0.0017 3.7E-08 64.1 17.5 190 333-563 190-391 (498)
243 KOG0302 Ribosome Assembly prot 97.8 0.00068 1.5E-08 65.2 14.1 159 332-522 214-379 (440)
244 KOG2111 Uncharacterized conser 97.8 0.0078 1.7E-07 57.0 20.5 173 354-565 75-250 (346)
245 COG3490 Uncharacterized protei 97.7 0.011 2.5E-07 55.2 20.7 219 333-596 71-318 (366)
246 COG1770 PtrB Protease II [Amin 97.7 0.045 9.7E-07 57.8 27.0 220 334-597 133-357 (682)
247 TIGR03300 assembly_YfgL outer 97.7 0.094 2E-06 54.3 34.6 103 95-226 60-166 (377)
248 KOG0308 Conserved WD40 repeat- 97.7 0.0018 3.8E-08 66.9 15.8 224 338-616 33-272 (735)
249 KOG2321 WD40 repeat protein [G 97.6 0.016 3.5E-07 59.2 21.9 151 436-622 176-337 (703)
250 KOG0281 Beta-TrCP (transducin 97.6 0.00038 8.2E-09 66.1 9.2 189 335-591 241-431 (499)
251 PF07676 PD40: WD40-like Beta 97.6 0.00014 3.1E-09 47.1 4.4 35 429-464 3-39 (39)
252 KOG0300 WD40 repeat-containing 97.5 0.015 3.3E-07 54.8 18.7 177 374-610 274-455 (481)
253 KOG0267 Microtubule severing p 97.5 0.00021 4.6E-09 74.2 7.2 181 333-559 74-256 (825)
254 KOG0290 Conserved WD40 repeat- 97.5 0.046 1E-06 51.2 20.9 189 334-562 155-357 (364)
255 KOG0302 Ribosome Assembly prot 97.5 0.0027 5.8E-08 61.3 13.1 142 436-612 212-360 (440)
256 KOG4227 WD40 repeat protein [G 97.4 0.032 7E-07 54.2 20.1 233 336-617 112-375 (609)
257 KOG0649 WD40 repeat protein [G 97.4 0.016 3.6E-07 52.7 16.8 139 437-610 116-257 (325)
258 KOG2321 WD40 repeat protein [G 97.4 0.018 3.9E-07 58.9 18.7 221 333-610 55-282 (703)
259 KOG3881 Uncharacterized conser 97.4 0.013 2.7E-07 57.1 16.9 190 340-562 115-311 (412)
260 COG2319 FOG: WD40 repeat [Gene 97.4 0.062 1.3E-06 55.8 24.4 223 335-616 71-301 (466)
261 KOG2100 Dipeptidyl aminopeptid 97.4 0.12 2.7E-06 57.8 27.1 113 441-564 345-460 (755)
262 KOG1034 Transcriptional repres 97.4 0.0055 1.2E-07 58.2 13.8 94 352-468 113-211 (385)
263 KOG0321 WD40 repeat-containing 97.3 0.016 3.5E-07 59.9 17.8 235 338-621 60-339 (720)
264 PF06977 SdiA-regulated: SdiA- 97.3 0.02 4.4E-07 54.4 17.7 200 373-618 22-240 (248)
265 KOG0281 Beta-TrCP (transducin 97.3 0.0011 2.3E-08 63.1 8.6 199 34-278 228-429 (499)
266 KOG0321 WD40 repeat-containing 97.3 0.04 8.6E-07 57.2 19.9 248 279-563 98-383 (720)
267 KOG0290 Conserved WD40 repeat- 97.3 0.055 1.2E-06 50.7 18.9 222 333-609 100-345 (364)
268 KOG0267 Microtubule severing p 97.3 0.00053 1.2E-08 71.4 6.5 189 372-621 70-260 (825)
269 KOG2111 Uncharacterized conser 97.3 0.016 3.6E-07 54.9 15.6 152 334-522 99-257 (346)
270 COG3490 Uncharacterized protei 97.2 0.11 2.4E-06 48.9 20.6 203 144-371 72-319 (366)
271 KOG1272 WD40-repeat-containing 97.2 0.0019 4E-08 64.0 9.4 221 329-617 129-352 (545)
272 TIGR03300 assembly_YfgL outer 97.2 0.36 7.8E-06 49.9 36.5 93 446-563 278-371 (377)
273 COG3204 Uncharacterized protei 97.2 0.081 1.8E-06 50.2 19.4 205 373-620 86-305 (316)
274 PF06977 SdiA-regulated: SdiA- 97.2 0.11 2.3E-06 49.6 20.7 199 334-561 26-240 (248)
275 KOG4547 WD40 repeat-containing 97.2 0.021 4.5E-07 58.7 16.4 133 458-628 78-218 (541)
276 KOG0270 WD40 repeat-containing 97.1 0.041 8.8E-07 54.6 17.6 201 286-523 248-451 (463)
277 KOG4227 WD40 repeat protein [G 97.1 0.017 3.6E-07 56.1 14.5 198 372-619 56-264 (609)
278 COG2319 FOG: WD40 repeat [Gene 97.1 0.45 9.7E-06 49.2 36.4 350 142-616 68-429 (466)
279 KOG0274 Cdc4 and related F-box 97.1 0.23 5E-06 53.1 24.6 140 352-531 309-451 (537)
280 KOG1920 IkappaB kinase complex 97.1 0.27 5.7E-06 55.4 24.7 121 333-469 199-323 (1265)
281 KOG4547 WD40 repeat-containing 97.0 0.058 1.3E-06 55.5 18.3 139 351-523 77-224 (541)
282 KOG0301 Phospholipase A2-activ 97.0 0.03 6.5E-07 58.6 15.7 194 354-616 81-276 (745)
283 PF15492 Nbas_N: Neuroblastoma 96.9 0.38 8.2E-06 45.5 23.2 36 333-371 47-82 (282)
284 KOG1587 Cytoplasmic dynein int 96.9 0.12 2.6E-06 55.0 20.4 120 372-522 398-517 (555)
285 KOG1920 IkappaB kinase complex 96.9 0.14 3E-06 57.5 20.8 197 335-562 74-310 (1265)
286 KOG2041 WD40 repeat protein [G 96.9 0.12 2.6E-06 54.5 19.1 266 195-505 19-330 (1189)
287 PF15492 Nbas_N: Neuroblastoma 96.8 0.45 9.8E-06 45.0 23.1 66 144-225 2-75 (282)
288 PF04053 Coatomer_WDAD: Coatom 96.8 0.049 1.1E-06 56.7 16.4 204 333-619 36-253 (443)
289 COG3204 Uncharacterized protei 96.8 0.49 1.1E-05 45.1 21.5 199 333-561 89-302 (316)
290 PF13360 PQQ_2: PQQ-like domai 96.8 0.45 9.8E-06 45.4 21.8 188 338-593 33-235 (238)
291 KOG2100 Dipeptidyl aminopeptid 96.8 0.49 1.1E-05 53.1 24.6 109 489-621 345-459 (755)
292 KOG1272 WD40-repeat-containing 96.7 0.011 2.3E-07 58.9 9.9 172 334-553 175-346 (545)
293 PRK11138 outer membrane biogen 96.7 1 2.3E-05 46.8 32.1 48 174-226 131-181 (394)
294 TIGR02604 Piru_Ver_Nterm putat 96.6 0.18 3.9E-06 51.8 19.0 168 437-618 15-202 (367)
295 TIGR03606 non_repeat_PQQ dehyd 96.6 0.21 4.7E-06 51.8 19.0 173 436-617 30-247 (454)
296 PF11768 DUF3312: Protein of u 96.6 0.71 1.5E-05 48.2 22.0 146 352-525 182-333 (545)
297 COG4257 Vgb Streptogramin lyas 96.4 0.86 1.9E-05 42.9 22.2 49 196-255 67-116 (353)
298 KOG0274 Cdc4 and related F-box 96.4 0.26 5.6E-06 52.8 18.7 179 353-597 270-450 (537)
299 KOG0649 WD40 repeat protein [G 96.4 0.78 1.7E-05 42.2 23.4 129 334-494 119-257 (325)
300 COG4257 Vgb Streptogramin lyas 96.3 1 2.2E-05 42.5 20.8 157 335-530 67-227 (353)
301 KOG3881 Uncharacterized conser 96.3 0.21 4.6E-06 48.9 15.2 174 400-617 124-308 (412)
302 KOG1310 WD40 repeat protein [G 96.2 0.2 4.2E-06 51.3 15.4 121 333-468 54-178 (758)
303 KOG0301 Phospholipase A2-activ 96.2 0.87 1.9E-05 48.2 20.2 186 235-466 94-288 (745)
304 PRK13614 lipoprotein LpqB; Pro 96.2 0.43 9.3E-06 51.2 18.7 170 333-526 346-523 (573)
305 KOG0270 WD40 repeat-containing 96.1 0.35 7.6E-06 48.2 16.3 148 376-562 247-394 (463)
306 KOG4532 WD40-like repeat conta 96.1 0.54 1.2E-05 43.9 16.4 119 333-472 162-286 (344)
307 PF04053 Coatomer_WDAD: Coatom 96.1 0.23 5E-06 51.8 16.0 138 341-505 117-254 (443)
308 KOG1188 WD40 repeat protein [G 96.1 0.35 7.5E-06 46.7 15.4 178 353-564 49-235 (376)
309 KOG1912 WD40 repeat protein [G 96.1 2.8 6E-05 45.3 24.3 97 459-563 446-543 (1062)
310 KOG2041 WD40 repeat protein [G 96.0 0.15 3.2E-06 53.9 13.8 173 334-525 120-301 (1189)
311 KOG1520 Predicted alkaloid syn 96.0 0.62 1.3E-05 46.3 17.2 150 435-617 114-282 (376)
312 PRK13613 lipoprotein LpqB; Pro 95.9 2.3 5E-05 46.3 22.7 169 283-471 364-542 (599)
313 KOG2445 Nuclear pore complex c 95.9 1.8 3.9E-05 41.4 21.5 196 341-565 73-312 (361)
314 KOG1034 Transcriptional repres 95.8 0.29 6.3E-06 46.9 13.6 111 436-563 90-203 (385)
315 KOG4532 WD40-like repeat conta 95.8 1.7 3.7E-05 40.7 19.0 123 374-528 160-289 (344)
316 PF07995 GSDH: Glucose / Sorbo 95.8 2.6 5.6E-05 42.5 21.7 168 334-519 6-212 (331)
317 PRK13613 lipoprotein LpqB; Pro 95.7 2.4 5.2E-05 46.1 22.1 167 333-526 366-544 (599)
318 KOG3914 WD repeat protein WDR4 95.6 0.39 8.4E-06 47.4 14.0 156 335-525 68-227 (390)
319 PF04841 Vps16_N: Vps16, N-ter 95.5 3.9 8.4E-05 42.6 25.4 65 336-408 35-108 (410)
320 PF13360 PQQ_2: PQQ-like domai 95.3 2.7 5.8E-05 39.9 20.7 67 446-526 75-145 (238)
321 PF07995 GSDH: Glucose / Sorbo 95.3 0.43 9.4E-06 48.1 14.0 165 438-617 4-199 (331)
322 PRK13615 lipoprotein LpqB; Pro 95.3 2.2 4.7E-05 45.8 19.6 166 333-526 337-507 (557)
323 KOG4499 Ca2+-binding protein R 95.1 2.8 6.1E-05 38.6 19.0 145 437-610 110-264 (310)
324 KOG1520 Predicted alkaloid syn 94.9 1.7 3.7E-05 43.3 16.2 146 373-559 115-282 (376)
325 KOG1912 WD40 repeat protein [G 94.8 3.4 7.5E-05 44.7 18.8 143 333-504 19-177 (1062)
326 PF03088 Str_synth: Strictosid 94.8 0.12 2.7E-06 40.1 6.5 71 441-522 3-88 (89)
327 KOG2445 Nuclear pore complex c 94.7 4.2 9.1E-05 39.0 21.9 193 334-553 18-235 (361)
328 KOG1587 Cytoplasmic dynein int 94.7 4.5 9.9E-05 43.4 20.1 242 333-621 246-508 (555)
329 KOG3914 WD repeat protein WDR4 94.6 1.2 2.7E-05 44.0 14.3 63 439-505 111-173 (390)
330 PRK13614 lipoprotein LpqB; Pro 94.6 2.8 6.2E-05 45.1 18.4 172 374-596 344-526 (573)
331 KOG1354 Serine/threonine prote 94.6 1.5 3.2E-05 42.6 14.2 208 373-617 85-347 (433)
332 KOG0322 G-protein beta subunit 94.5 0.39 8.5E-06 44.7 10.1 70 437-520 253-322 (323)
333 PRK13615 lipoprotein LpqB; Pro 94.3 9.4 0.0002 41.1 21.6 163 285-471 337-505 (557)
334 KOG0322 G-protein beta subunit 94.1 0.4 8.6E-06 44.6 9.1 59 544-619 254-313 (323)
335 KOG3621 WD40 repeat-containing 94.0 3.3 7.1E-05 44.3 16.7 95 146-260 40-142 (726)
336 TIGR02604 Piru_Ver_Nterm putat 94.0 4.3 9.3E-05 41.7 17.9 116 428-561 65-202 (367)
337 KOG0644 Uncharacterized conser 94.0 0.17 3.7E-06 54.5 7.5 227 335-618 196-457 (1113)
338 KOG0644 Uncharacterized conser 94.0 0.19 4.1E-06 54.1 7.9 85 459-561 374-458 (1113)
339 PF03088 Str_synth: Strictosid 93.9 0.74 1.6E-05 35.8 9.1 76 489-589 3-88 (89)
340 PRK11138 outer membrane biogen 93.8 9.8 0.00021 39.5 35.0 65 446-526 293-358 (394)
341 KOG1354 Serine/threonine prote 93.6 7.6 0.00017 37.9 19.6 69 333-410 276-360 (433)
342 KOG3621 WD40 repeat-containing 93.4 0.76 1.6E-05 48.9 10.9 110 336-467 40-155 (726)
343 PF08553 VID27: VID27 cytoplas 93.1 3.8 8.2E-05 45.7 16.4 138 444-616 489-635 (794)
344 PF08553 VID27: VID27 cytoplas 93.1 1.4 3E-05 49.0 13.0 143 343-520 494-646 (794)
345 PF11768 DUF3312: Protein of u 93.0 14 0.0003 39.0 28.3 91 355-471 237-332 (545)
346 PHA03098 kelch-like protein; P 92.8 14 0.00031 40.1 20.8 113 460-597 406-520 (534)
347 PF05694 SBP56: 56kDa selenium 92.7 3 6.5E-05 42.5 13.6 202 338-561 138-393 (461)
348 KOG1334 WD40 repeat protein [G 92.6 3 6.6E-05 42.5 13.3 261 236-528 136-431 (559)
349 KOG0974 WD-repeat protein WDR6 92.5 1.2 2.7E-05 49.4 11.5 140 442-621 140-280 (967)
350 PF13449 Phytase-like: Esteras 92.4 11 0.00023 38.0 17.6 183 436-621 20-236 (326)
351 KOG1214 Nidogen and related ba 92.3 14 0.0003 40.6 18.2 197 335-591 1030-1229(1289)
352 KOG0974 WD-repeat protein WDR6 92.1 5.4 0.00012 44.6 15.6 150 337-526 95-251 (967)
353 KOG2377 Uncharacterized conser 92.0 9.9 0.00021 38.8 15.8 139 336-503 28-173 (657)
354 KOG2281 Dipeptidyl aminopeptid 91.8 8.7 0.00019 41.0 16.0 55 477-534 494-552 (867)
355 PF03022 MRJP: Major royal jel 91.7 3.8 8.2E-05 40.3 13.0 160 342-562 77-255 (287)
356 PF03022 MRJP: Major royal jel 91.5 15 0.00033 36.1 17.2 135 449-621 78-257 (287)
357 PF00400 WD40: WD domain, G-be 91.1 0.39 8.4E-06 30.5 3.8 36 476-519 4-39 (39)
358 PF05787 DUF839: Bacterial pro 91.1 9.7 0.00021 40.9 16.3 39 515-560 482-520 (524)
359 KOG1188 WD40 repeat protein [G 90.8 9.5 0.00021 37.3 13.9 169 400-614 49-228 (376)
360 PF05096 Glu_cyclase_2: Glutam 90.6 16 0.00036 34.9 20.1 188 336-562 51-251 (264)
361 KOG1214 Nidogen and related ba 89.9 24 0.00052 38.8 17.3 181 338-561 987-1175(1289)
362 PF13449 Phytase-like: Esteras 89.7 24 0.00053 35.5 19.7 110 354-469 112-252 (326)
363 COG1505 Serine proteases of th 89.2 34 0.00074 36.6 24.4 51 249-299 116-171 (648)
364 PF00400 WD40: WD domain, G-be 88.6 0.69 1.5E-05 29.3 3.5 36 36-73 4-39 (39)
365 KOG2066 Vacuolar assembly/sort 88.2 17 0.00037 39.8 15.0 169 341-560 49-223 (846)
366 PF05694 SBP56: 56kDa selenium 88.1 9.9 0.00021 39.0 12.6 67 436-504 312-394 (461)
367 KOG0642 Cell-cycle nuclear pro 88.1 4 8.6E-05 42.4 9.9 70 197-276 301-373 (577)
368 KOG1240 Protein kinase contain 87.9 57 0.0012 38.0 19.2 80 372-472 1195-1277(1431)
369 PF02333 Phytase: Phytase; In 87.5 36 0.00077 34.7 20.0 144 353-521 77-237 (381)
370 PF14870 PSII_BNR: Photosynthe 87.3 32 0.0007 34.0 18.5 120 461-619 125-252 (302)
371 PF05787 DUF839: Bacterial pro 87.2 9.5 0.00021 41.0 12.8 131 488-619 354-521 (524)
372 KOG1334 WD40 repeat protein [G 87.2 24 0.00053 36.3 14.5 107 133-259 136-249 (559)
373 KOG4649 PQQ (pyrrolo-quinoline 86.9 28 0.00061 32.9 14.7 134 440-615 15-152 (354)
374 COG3211 PhoX Predicted phospha 86.7 23 0.0005 37.5 14.5 70 488-564 504-576 (616)
375 TIGR03606 non_repeat_PQQ dehyd 86.4 16 0.00035 38.3 13.6 114 485-621 31-167 (454)
376 KOG1310 WD40 repeat protein [G 86.2 2.6 5.7E-05 43.6 7.4 82 477-589 44-126 (758)
377 KOG0642 Cell-cycle nuclear pro 86.1 21 0.00045 37.4 13.7 242 334-621 299-553 (577)
378 KOG0309 Conserved WD40 repeat- 85.7 6.5 0.00014 42.4 10.2 163 333-530 28-197 (1081)
379 KOG2395 Protein involved in va 85.6 11 0.00024 39.3 11.4 151 344-521 347-500 (644)
380 PF15390 DUF4613: Domain of un 84.5 61 0.0013 34.6 17.9 158 334-523 24-188 (671)
381 PF15390 DUF4613: Domain of un 83.6 45 0.00098 35.5 14.9 61 487-562 116-176 (671)
382 PF07250 Glyoxal_oxid_N: Glyox 83.3 42 0.00092 31.9 15.2 149 353-525 45-201 (243)
383 KOG2395 Protein involved in va 83.3 26 0.00056 36.7 12.8 141 448-616 345-488 (644)
384 PF14870 PSII_BNR: Photosynthe 81.3 37 0.0008 33.6 13.0 161 354-557 124-291 (302)
385 KOG1645 RING-finger-containing 81.2 31 0.00067 34.7 12.1 76 372-471 193-269 (463)
386 KOG1230 Protein containing rep 79.5 45 0.00098 33.8 12.6 138 461-616 99-248 (521)
387 PLN00033 photosystem II stabil 79.3 74 0.0016 32.9 15.1 140 440-619 243-390 (398)
388 PHA03098 kelch-like protein; P 78.1 1.1E+02 0.0024 33.3 19.6 135 460-617 358-494 (534)
389 PF05096 Glu_cyclase_2: Glutam 77.7 48 0.001 31.8 12.0 111 439-589 48-158 (264)
390 PF12566 DUF3748: Protein of u 77.4 30 0.00065 28.0 8.7 19 545-563 71-89 (122)
391 KOG1832 HIV-1 Vpr-binding prot 76.8 3.7 8.1E-05 45.1 4.9 174 334-560 1106-1285(1516)
392 KOG3617 WD40 and TPR repeat-co 76.1 11 0.00023 41.6 7.9 114 438-589 18-134 (1416)
393 TIGR03032 conserved hypothetic 75.9 55 0.0012 32.2 12.0 83 437-529 204-298 (335)
394 KOG4649 PQQ (pyrrolo-quinoline 75.5 76 0.0016 30.2 22.2 140 336-505 17-157 (354)
395 TIGR02276 beta_rpt_yvtn 40-res 75.3 11 0.00025 24.0 5.4 26 445-472 1-26 (42)
396 TIGR02276 beta_rpt_yvtn 40-res 75.1 9.7 0.00021 24.3 5.0 26 551-592 1-26 (42)
397 KOG1645 RING-finger-containing 74.7 1E+02 0.0022 31.3 16.9 70 333-410 197-267 (463)
398 PF09910 DUF2139: Uncharacteri 73.0 22 0.00047 34.4 8.3 75 511-599 76-150 (339)
399 KOG3617 WD40 and TPR repeat-co 72.2 14 0.0003 40.8 7.6 115 376-521 19-133 (1416)
400 KOG4441 Proteins containing BT 72.2 1.6E+02 0.0034 32.4 18.6 201 353-596 348-554 (571)
401 KOG2377 Uncharacterized conser 71.9 37 0.00081 34.8 10.0 104 482-615 65-169 (657)
402 cd00216 PQQ_DH Dehydrogenases 71.9 1.5E+02 0.0032 31.9 31.7 145 449-621 302-459 (488)
403 PF12894 Apc4_WD40: Anaphase-p 71.3 16 0.00034 24.5 5.2 21 543-563 13-33 (47)
404 PF15525 DUF4652: Domain of un 70.4 82 0.0018 28.3 12.9 83 148-241 66-158 (200)
405 COG5167 VID27 Protein involved 70.4 49 0.0011 34.6 10.6 153 341-522 478-633 (776)
406 KOG4640 Anaphase-promoting com 69.7 18 0.00038 38.6 7.6 73 196-284 26-99 (665)
407 COG4590 ABC-type uncharacteriz 68.9 85 0.0018 32.3 11.8 31 372-410 357-387 (733)
408 KOG4640 Anaphase-promoting com 68.7 27 0.00059 37.2 8.7 75 373-472 21-96 (665)
409 PF00780 CNH: CNH domain; Int 68.6 1.2E+02 0.0025 29.4 15.5 162 340-530 6-174 (275)
410 PF12894 Apc4_WD40: Anaphase-p 67.9 16 0.00036 24.4 4.7 30 485-522 13-42 (47)
411 PLN02193 nitrile-specifier pro 67.4 1.8E+02 0.0039 31.1 22.0 82 445-530 327-419 (470)
412 PF07250 Glyoxal_oxid_N: Glyox 66.1 1.2E+02 0.0027 28.8 13.5 79 426-505 57-139 (243)
413 KOG1240 Protein kinase contain 64.8 2.9E+02 0.0064 32.6 19.7 128 372-525 1098-1229(1431)
414 smart00135 LY Low-density lipo 63.8 22 0.00048 22.6 4.9 32 485-523 10-41 (43)
415 KOG2237 Predicted serine prote 62.1 2.4E+02 0.0053 30.8 23.3 67 250-320 145-218 (712)
416 KOG2280 Vacuolar assembly/sort 62.1 1.7E+02 0.0038 32.4 13.2 40 477-524 210-249 (829)
417 COG2133 Glucose/sorbosone dehy 62.0 1.6E+02 0.0035 30.3 12.6 69 545-617 180-257 (399)
418 PF09910 DUF2139: Uncharacteri 61.8 1.6E+02 0.0036 28.7 14.2 100 351-472 75-185 (339)
419 KOG4499 Ca2+-binding protein R 61.3 1.5E+02 0.0032 27.9 22.2 155 374-562 110-275 (310)
420 KOG2066 Vacuolar assembly/sort 60.6 2.7E+02 0.0059 31.1 14.3 53 543-615 162-221 (846)
421 TIGR03032 conserved hypothetic 59.7 70 0.0015 31.5 9.1 89 88-187 200-296 (335)
422 PHA02713 hypothetical protein; 59.2 2.7E+02 0.0059 30.4 18.5 65 460-530 432-498 (557)
423 KOG1517 Guanine nucleotide bin 58.4 3.6E+02 0.0077 31.5 20.8 184 378-617 1171-1369(1387)
424 PHA02713 hypothetical protein; 58.0 2.9E+02 0.0062 30.3 20.9 149 444-617 349-519 (557)
425 COG5167 VID27 Protein involved 56.8 1.6E+02 0.0036 30.9 11.4 140 441-619 472-624 (776)
426 PF12566 DUF3748: Protein of u 56.6 82 0.0018 25.6 7.4 23 373-395 68-90 (122)
427 PF12458 DUF3686: ATPase invol 55.5 74 0.0016 32.6 8.7 68 197-276 313-383 (448)
428 PF00780 CNH: CNH domain; Int 55.3 2E+02 0.0044 27.7 18.0 61 383-470 6-66 (275)
429 smart00135 LY Low-density lipo 54.9 29 0.00062 22.0 4.2 31 544-590 11-41 (43)
430 KOG0882 Cyclophilin-related pe 53.9 2.5E+02 0.0054 29.1 12.0 79 436-529 202-313 (558)
431 PF03178 CPSF_A: CPSF A subuni 53.6 2.4E+02 0.0052 28.1 16.8 97 447-563 98-194 (321)
432 PLN02193 nitrile-specifier pro 53.1 3.1E+02 0.0067 29.2 21.7 122 460-597 294-419 (470)
433 KOG0379 Kelch repeat-containin 51.9 3.3E+02 0.0071 29.2 13.9 139 461-620 140-286 (482)
434 KOG2114 Vacuolar assembly/sort 51.9 4E+02 0.0087 30.2 21.6 230 336-614 30-268 (933)
435 COG5276 Uncharacterized conser 51.1 2.5E+02 0.0054 27.5 16.6 118 372-525 86-203 (370)
436 PF01731 Arylesterase: Arylest 51.0 74 0.0016 24.7 6.4 37 477-520 47-83 (86)
437 PRK13684 Ycf48-like protein; P 50.8 2.8E+02 0.006 28.0 16.7 105 372-505 172-280 (334)
438 PF01731 Arylesterase: Arylest 50.8 82 0.0018 24.4 6.6 40 131-181 45-84 (86)
439 PF04841 Vps16_N: Vps16, N-ter 50.6 3.2E+02 0.0068 28.6 26.2 32 484-523 217-248 (410)
440 COG5276 Uncharacterized conser 50.2 2.6E+02 0.0055 27.4 22.1 172 352-564 104-278 (370)
441 smart00320 WD40 WD40 repeats. 49.7 32 0.0007 19.9 3.8 23 483-505 12-34 (40)
442 cd00216 PQQ_DH Dehydrogenases 49.1 3.7E+02 0.0079 28.9 32.5 57 459-526 365-429 (488)
443 PF15525 DUF4652: Domain of un 49.0 2E+02 0.0044 25.9 11.4 73 338-410 66-149 (200)
444 KOG1832 HIV-1 Vpr-binding prot 48.7 30 0.00065 38.6 5.1 142 436-617 1102-1248(1516)
445 PF05935 Arylsulfotrans: Aryls 48.3 3.7E+02 0.0081 28.7 18.9 214 336-563 154-438 (477)
446 KOG2281 Dipeptidyl aminopeptid 47.9 2.9E+02 0.0062 30.3 11.8 54 549-615 511-565 (867)
447 TIGR03548 mutarot_permut cycli 47.7 3E+02 0.0065 27.4 13.8 124 447-596 72-202 (323)
448 COG4247 Phy 3-phytase (myo-ino 47.3 1.6E+02 0.0034 28.0 8.8 79 492-598 64-144 (364)
449 PF05935 Arylsulfotrans: Aryls 47.3 3.9E+02 0.0083 28.6 17.8 131 441-597 153-310 (477)
450 PF02191 OLF: Olfactomedin-lik 47.3 2.7E+02 0.0058 26.8 16.9 143 344-504 81-239 (250)
451 KOG0309 Conserved WD40 repeat- 47.2 1.6E+02 0.0034 32.5 9.9 58 372-449 24-81 (1081)
452 PF07569 Hira: TUP1-like enhan 46.2 1.7E+02 0.0036 27.5 9.3 83 490-598 17-105 (219)
453 PLN02153 epithiospecifier prot 46.1 3.3E+02 0.0071 27.4 20.8 124 461-596 160-292 (341)
454 PF03178 CPSF_A: CPSF A subuni 45.0 1.1E+02 0.0023 30.6 8.5 90 495-617 98-190 (321)
455 PLN00033 photosystem II stabil 44.2 3.9E+02 0.0084 27.8 17.7 137 376-557 242-386 (398)
456 PF05567 Neisseria_PilC: Neiss 44.0 89 0.0019 31.5 7.6 73 150-225 158-241 (335)
457 PF10313 DUF2415: Uncharacteri 43.2 85 0.0018 20.6 4.7 29 486-522 3-34 (43)
458 PF10168 Nup88: Nuclear pore c 43.1 4.5E+02 0.0097 29.8 13.4 22 484-505 85-106 (717)
459 KOG1230 Protein containing rep 42.5 1E+02 0.0022 31.5 7.3 77 512-599 97-173 (521)
460 PLN02153 epithiospecifier prot 42.3 3.7E+02 0.0081 27.0 20.5 66 460-529 217-292 (341)
461 COG5170 CDC55 Serine/threonine 40.4 1.1E+02 0.0023 29.8 6.9 67 486-561 283-357 (460)
462 PF07569 Hira: TUP1-like enhan 39.6 2.2E+02 0.0049 26.6 9.1 77 442-530 17-104 (219)
463 PF10584 Proteasome_A_N: Prote 38.9 14 0.00031 20.4 0.6 9 145-153 6-14 (23)
464 PF10168 Nup88: Nuclear pore c 38.7 4.3E+02 0.0093 29.9 12.4 75 436-522 85-180 (717)
465 PF14269 Arylsulfotran_2: Aryl 38.4 4.1E+02 0.0088 26.3 13.6 85 439-529 147-248 (299)
466 PF12234 Rav1p_C: RAVE protein 37.4 5.1E+02 0.011 28.7 12.3 107 343-467 42-155 (631)
467 PRK13684 Ycf48-like protein; P 37.2 4.5E+02 0.0097 26.5 13.6 77 461-558 153-231 (334)
468 PF10214 Rrn6: RNA polymerase 36.8 5E+02 0.011 29.8 13.0 99 437-552 147-257 (765)
469 TIGR03075 PQQ_enz_alc_DH PQQ-d 36.2 6E+02 0.013 27.6 24.0 38 489-526 239-284 (527)
470 COG3211 PhoX Predicted phospha 35.1 6.1E+02 0.013 27.4 19.5 124 488-620 421-575 (616)
471 KOG2114 Vacuolar assembly/sort 34.4 7.5E+02 0.016 28.2 21.4 148 375-564 128-276 (933)
472 KOG4714 Nucleoporin [Nuclear s 32.2 96 0.0021 29.5 5.1 73 438-522 182-255 (319)
473 COG3823 Glutamine cyclotransfe 31.8 4.2E+02 0.0092 24.6 16.5 48 515-562 198-249 (262)
474 KOG1064 RAVE (regulator of V-A 31.7 1.7E+02 0.0036 36.3 7.9 116 373-526 2252-2371(2439)
475 KOG0280 Uncharacterized conser 31.5 5.1E+02 0.011 25.4 15.2 74 438-522 124-197 (339)
476 KOG0918 Selenium-binding prote 30.7 1.5E+02 0.0031 30.2 6.3 35 436-472 312-346 (476)
477 KOG2280 Vacuolar assembly/sort 30.5 8.2E+02 0.018 27.5 14.0 50 352-409 62-112 (829)
478 KOG2695 WD40 repeat protein [G 30.0 5.3E+02 0.011 25.9 9.8 159 308-494 231-399 (425)
479 smart00284 OLF Olfactomedin-li 30.0 5.1E+02 0.011 24.9 16.7 143 344-504 86-244 (255)
480 KOG1275 PAB-dependent poly(A) 28.8 9.6E+02 0.021 27.7 14.1 78 173-262 157-235 (1118)
481 KOG4714 Nucleoporin [Nuclear s 27.1 1.4E+02 0.003 28.5 5.2 73 375-469 182-255 (319)
482 KOG0882 Cyclophilin-related pe 27.1 1.2E+02 0.0026 31.2 5.2 89 484-598 202-315 (558)
483 PHA02790 Kelch-like protein; P 26.9 8E+02 0.017 26.2 20.3 142 354-530 287-432 (480)
484 COG4831 Roadblock/LC7 domain [ 26.8 50 0.0011 25.6 1.9 23 41-64 10-32 (109)
485 PF12768 Rax2: Cortical protei 25.8 5.3E+02 0.012 25.2 9.4 105 513-639 16-127 (281)
486 KOG2079 Vacuolar assembly/sort 25.8 1.4E+02 0.0031 34.5 5.9 94 495-621 99-197 (1206)
487 PF05262 Borrelia_P83: Borreli 24.7 6.4E+02 0.014 27.0 10.1 59 347-410 368-427 (489)
488 KOG1517 Guanine nucleotide bin 24.5 1.2E+03 0.026 27.5 22.2 191 336-562 1172-1372(1387)
489 COG3823 Glutamine cyclotransfe 24.1 5.9E+02 0.013 23.7 14.6 135 447-621 100-251 (262)
490 PF13570 PQQ_3: PQQ-like domai 24.0 1.7E+02 0.0037 18.3 3.9 25 95-129 16-40 (40)
491 KOG4441 Proteins containing BT 23.8 1E+03 0.022 26.2 22.8 146 447-618 380-530 (571)
492 PF12234 Rav1p_C: RAVE protein 23.3 1E+03 0.023 26.4 11.8 43 513-562 51-95 (631)
493 KOG0280 Uncharacterized conser 22.3 7.5E+02 0.016 24.3 14.0 140 375-554 124-266 (339)
494 PHA02790 Kelch-like protein; P 22.0 9.8E+02 0.021 25.5 19.0 76 445-530 317-393 (480)
495 KOG2237 Predicted serine prote 21.4 1.1E+03 0.025 26.0 13.2 73 442-523 144-219 (712)
No 1
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=100.00 E-value=3.2e-30 Score=246.27 Aligned_cols=447 Identities=19% Similarity=0.237 Sum_probs=317.6
Q ss_pred CcceEEEEeecCCceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCC----CcceEEEcCCC
Q 039497 3 PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSG----SPRIYQTRPGS 78 (642)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g----~~~l~~~~~~g 78 (642)
.|++|.|+ +..|+|..++.. |.++|||.+-+.+-+|+|| |||+.|||+...-| ..+||++...+
T Consensus 49 ~GD~IiFt------~~DdlWe~slk~-----g~~~ritS~lGVvnn~kf~-pdGrkvaf~rv~~~ss~~taDly~v~~e~ 116 (668)
T COG4946 49 YGDRIIFT------CCDDLWEYSLKD-----GKPLRITSGLGVVNNPKFS-PDGRKVAFSRVMLGSSLQTADLYVVPSED 116 (668)
T ss_pred cCcEEEEE------echHHHHhhhcc-----CCeeEEecccceeccccCC-CCCcEEEEEEEEecCCCccccEEEEeCCC
Confidence 58999999 999999999998 9999999999999999999 99999999533322 57899994443
Q ss_pred CcccccCCCCCCcccccccc--CCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEE
Q 039497 79 SKTELLPSIPCSLFHDRPVA--RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAV 156 (642)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~ 156 (642)
..+.+++-. +..+.+..-| +|..++.+.... ++..|.+||.++.++.+..+|..+++.. . +-.|| .|+.
T Consensus 117 Ge~kRiTyf-Gr~fT~VaG~~~dg~iiV~TD~~t----PF~q~~~lYkv~~dg~~~e~LnlGpath--i-v~~dg-~ivi 187 (668)
T COG4946 117 GEAKRITYF-GRRFTRVAGWIPDGEIIVSTDFHT----PFSQWTELYKVNVDGIKTEPLNLGPATH--I-VIKDG-IIVI 187 (668)
T ss_pred CcEEEEEEe-ccccceeeccCCCCCEEEEeccCC----CcccceeeeEEccCCceeeeccCCceee--E-EEeCC-EEEE
Confidence 322222211 1112222222 555555544432 6777889999999999999998776543 2 34577 3444
Q ss_pred Ee--cCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC--CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCC
Q 039497 157 AS--YESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG--GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFP 232 (642)
Q Consensus 157 ~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~ 232 (642)
.+ .+.+.|+++..+..+.||+-...+...+++..-.+ .+|..-.+ ++||.. +.+|.-+||.+|+++.
T Consensus 188 gRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~-RvYFls-D~eG~GnlYSvdldGk------- 258 (668)
T COG4946 188 GRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGE-RVYFLS-DHEGVGNLYSVDLDGK------- 258 (668)
T ss_pred ccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcc-eEEEEe-cccCccceEEeccCCc-------
Confidence 43 46779999988888899887766656666665433 45665544 888888 7788889999999997
Q ss_pred ccceeeCCC-CCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcc
Q 039497 233 IAPTRVTPP-GVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQST 311 (642)
Q Consensus 233 ~~~~~l~~~-~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~ 311 (642)
...+.|.. ++...+ .+.|||+|+|. . ...|++||..+.....
T Consensus 259 -DlrrHTnFtdYY~R~--~nsDGkrIvFq--~----~GdIylydP~td~lek---------------------------- 301 (668)
T COG4946 259 -DLRRHTNFTDYYPRN--ANSDGKRIVFQ--N----AGDIYLYDPETDSLEK---------------------------- 301 (668)
T ss_pred -hhhhcCCchhccccc--cCCCCcEEEEe--c----CCcEEEeCCCcCccee----------------------------
Confidence 66777765 433332 35799999993 2 3389999873322000
Q ss_pred cceEe-eccCCCceeEEeeeCCCcc-EEcC-CCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEE
Q 039497 312 IPHLE-PVASPVKELRMLRLNGSFP-SFSP-DGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVI 388 (642)
Q Consensus 312 ~~~~~-~~~~~~~~~~~~~~~~~~~-~~sp-dg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~ 388 (642)
+.+. ++..+... ...-...... .|++ +|++|++++. ++.++++...+-..++...+.+....+.-|++.++
T Consensus 302 -ldI~lpl~rk~k~-~k~~~pskyledfa~~~Gd~ia~VSR----GkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~v 375 (668)
T COG4946 302 -LDIGLPLDRKKKQ-PKFVNPSKYLEDFAVVNGDYIALVSR----GKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDV 375 (668)
T ss_pred -eecCCcccccccc-ccccCHHHhhhhhccCCCcEEEEEec----CcEEEECCCCCeeEEcCCCCceEEEEEccCCcceE
Confidence 0000 11111000 0000000011 2333 6899999885 78999999888888888777788888998998887
Q ss_pred EEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC
Q 039497 389 YTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV 468 (642)
Q Consensus 389 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~ 468 (642)
...+ +...+.+++.+. + +.+++...- +.+..+..||||++++.+.+ +.+||++|++
T Consensus 376 igt~------dgD~l~iyd~~~---------~-----e~kr~e~~l-g~I~av~vs~dGK~~vvaNd---r~el~vidid 431 (668)
T COG4946 376 IGTN------DGDKLGIYDKDG---------G-----EVKRIEKDL-GNIEAVKVSPDGKKVVVAND---RFELWVIDID 431 (668)
T ss_pred Eecc------CCceEEEEecCC---------c-----eEEEeeCCc-cceEEEEEcCCCcEEEEEcC---ceEEEEEEec
Confidence 7764 345777877754 3 566666665 77888999999999988764 4599999999
Q ss_pred CCccccceeeCCCCC-CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccce
Q 039497 469 NGEFNGDIRQLTDGP-WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV 547 (642)
Q Consensus 469 ~g~~~~~~~~l~~~~-~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 547 (642)
+|+. +.+.... +-+..+.|||++++|+|+--.+- ...+|.++|+++++.-.+|.... +-.++
T Consensus 432 ngnv----~~idkS~~~lItdf~~~~nsr~iAYafP~gy----~tq~Iklydm~~~Kiy~vTT~ta---------~DfsP 494 (668)
T COG4946 432 NGNV----RLIDKSEYGLITDFDWHPNSRWIAYAFPEGY----YTQSIKLYDMDGGKIYDVTTPTA---------YDFSP 494 (668)
T ss_pred CCCe----eEecccccceeEEEEEcCCceeEEEecCcce----eeeeEEEEecCCCeEEEecCCcc---------cccCc
Confidence 9993 7776543 45678899999999999987653 67889999999999988886543 33789
Q ss_pred EEcCCCCEEEEEEecC
Q 039497 548 CFSADGEWLLFTANLG 563 (642)
Q Consensus 548 ~~S~Dg~~l~~~~~~~ 563 (642)
+|.|||++|||.+.+.
T Consensus 495 aFD~d~ryLYfLs~Rs 510 (668)
T COG4946 495 AFDPDGRYLYFLSARS 510 (668)
T ss_pred ccCCCCcEEEEEeccc
Confidence 9999999999999765
No 2
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.97 E-value=1.1e-26 Score=222.22 Aligned_cols=437 Identities=17% Similarity=0.199 Sum_probs=299.5
Q ss_pred ccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeee
Q 039497 95 RPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTD 174 (642)
Q Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~ 174 (642)
.|.+-|.+++|+... +||..++..|++.+||.+-+....|.|||||++|||.+--. +. .....+
T Consensus 45 ~PDI~GD~IiFt~~D-----------dlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~----~s-s~~taD 108 (668)
T COG4946 45 NPDIYGDRIIFTCCD-----------DLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVML----GS-SLQTAD 108 (668)
T ss_pred CCcccCcEEEEEech-----------HHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEe----cC-CCcccc
Confidence 577789999999976 69999999999999999999999999999999999954211 00 124679
Q ss_pred EEEEEecCCCceeEeecCC---CcceEeeCCeEEEEEecCCC---ceEEEEEecCCCcccccCCccceeeCCCCCccccc
Q 039497 175 IVVFQESDPNKRVIVCERG---GWPTWSGDSTIYFHRQADDG---WWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTP 248 (642)
Q Consensus 175 l~~~~~~~g~~~~l~~~~~---~~~~wspdg~~~~~~~~~~g---~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 248 (642)
||+++.++|+.+++|.... ..+.|+|||.++++...... .-.+|+++.++. ..++|.-.. +.++
T Consensus 109 ly~v~~e~Ge~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~--------~~e~LnlGp--athi 178 (668)
T COG4946 109 LYVVPSEDGEAKRITYFGRRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGI--------KTEPLNLGP--ATHI 178 (668)
T ss_pred EEEEeCCCCcEEEEEEeccccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCc--------eeeeccCCc--eeeE
Confidence 9999999999999998633 35699999998888743322 238999998886 344543322 2223
Q ss_pred eeecCCcEEEEEEe---------ccCCceeeEEEEEe-------ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCccc
Q 039497 249 AAFHDGKRLAVATR---------RKNRNFRHIEIYDL-------TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTI 312 (642)
Q Consensus 249 ~~SpdG~~l~~~~~---------~~~~~~~~i~~~d~-------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 312 (642)
.+ .|| .++..+. .+|+....||+-.- ...-..++++|.+- |.+++|...-... -.
T Consensus 179 v~-~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV--~~RvYFlsD~eG~-----Gn 249 (668)
T COG4946 179 VI-KDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIV--GERVYFLSDHEGV-----GN 249 (668)
T ss_pred EE-eCC-EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEE--cceEEEEecccCc-----cc
Confidence 33 577 3444321 23455556555332 11223445555554 5677777543332 24
Q ss_pred ceEeeccCCCceeEEeeeCCCcc-EEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeec-----C----Cce----ee
Q 039497 313 PHLEPVASPVKELRMLRLNGSFP-SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD-----R----TAF----YN 378 (642)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~-~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~-----~----~~~----~~ 378 (642)
++..+++++--. ..+.+....+ ..+.||++|+|.. .+.||++|.++.....+... . ... .+
T Consensus 250 lYSvdldGkDlr-rHTnFtdYY~R~~nsDGkrIvFq~----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyl 324 (668)
T COG4946 250 LYSVDLDGKDLR-RHTNFTDYYPRNANSDGKRIVFQN----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYL 324 (668)
T ss_pred eEEeccCCchhh-hcCCchhccccccCCCCcEEEEec----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhh
Confidence 455666654111 1223333333 3588999999944 57899999988876665431 0 000 01
Q ss_pred -eeec-CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCC
Q 039497 379 -SWSP-TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR 456 (642)
Q Consensus 379 -~~sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~ 456 (642)
.|++ +|..+++++++ +..|.+... + -.-++... +.+..-.++-|++.++....+
T Consensus 325 edfa~~~Gd~ia~VSRG--------kaFi~~~~~---------~-----~~iqv~~~--~~VrY~r~~~~~e~~vigt~d 380 (668)
T COG4946 325 EDFAVVNGDYIALVSRG--------KAFIMRPWD---------G-----YSIQVGKK--GGVRYRRIQVDPEGDVIGTND 380 (668)
T ss_pred hhhccCCCcEEEEEecC--------cEEEECCCC---------C-----eeEEcCCC--CceEEEEEccCCcceEEeccC
Confidence 1333 78999999954 333333211 1 22222222 345556677777776666543
Q ss_pred CCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCC
Q 039497 457 SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS 536 (642)
Q Consensus 457 ~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 536 (642)
. ..|-++|..+|+ ++.+...-+.+..+..+|||++++.+.++. +||++|+++++.+.+.... .+
T Consensus 381 g--D~l~iyd~~~~e----~kr~e~~lg~I~av~vs~dGK~~vvaNdr~--------el~vididngnv~~idkS~-~~- 444 (668)
T COG4946 381 G--DKLGIYDKDGGE----VKRIEKDLGNIEAVKVSPDGKKVVVANDRF--------ELWVIDIDNGNVRLIDKSE-YG- 444 (668)
T ss_pred C--ceEEEEecCCce----EEEeeCCccceEEEEEcCCCcEEEEEcCce--------EEEEEEecCCCeeEecccc-cc-
Confidence 2 268888999888 588888878888999999999998887665 4999999999999887633 34
Q ss_pred CCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceE--
Q 039497 537 GDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLD-- 614 (642)
Q Consensus 537 ~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~-- 614 (642)
.+....|+|++++|+|.-.++-. .+.|.++|.+++++-.+|.......+|+|.|||+++
T Consensus 445 ------lItdf~~~~nsr~iAYafP~gy~-------------tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 445 ------LITDFDWHPNSRWIAYAFPEGYY-------------TQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred ------eeEEEEEcCCceeEEEecCccee-------------eeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEE
Confidence 57889999999999998776543 358999999999999999877778999999999664
Q ss_pred EeecCCCcccccceeee
Q 039497 615 LGKLRLEDDIGDKLRGQ 631 (642)
Q Consensus 615 ~~~~~~~~~~~~~~~~~ 631 (642)
++.+.+. ++.+...-.
T Consensus 506 Ls~RsLd-Ps~Drv~fn 521 (668)
T COG4946 506 LSARSLD-PSNDRVIFN 521 (668)
T ss_pred EeccccC-CCCCeeEEE
Confidence 8888887 666655433
No 3
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.95 E-value=1.4e-25 Score=232.61 Aligned_cols=257 Identities=19% Similarity=0.239 Sum_probs=188.5
Q ss_pred ccceEeeccCCC-ceeEEeeeCCCccEEcCCCCE--EEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCE
Q 039497 311 TIPHLEPVASPV-KELRMLRLNGSFPSFSPDGGL--IVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKH 386 (642)
Q Consensus 311 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~--l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~ 386 (642)
..+|+.+.++.. ..++........|.|||||++ ++|++.+.+..+||++++++++.++++. .+....+.|||||++
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~ 244 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL 244 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence 345666665543 223222223367899999987 5568887888999999999999888887 556678999999999
Q ss_pred EEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEE
Q 039497 387 VIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLD 466 (642)
Q Consensus 387 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d 466 (642)
|+|+... .+...+.+..++. +. ..++ ..++++.........+.|||||++|+|.+.+++..+||+++
T Consensus 245 Laf~s~~----~g~~di~~~~~~~--~~--g~~g-----~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 245 LAFISDR----YGNPDLFIQSFSL--ET--GAIG-----KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred EEEEECC----CCCcceeEEEeec--cc--CCCC-----cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence 9999853 1122333322232 10 0012 45666654323456799999999999999888888999998
Q ss_pred CCC-CccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCccccccc
Q 039497 467 AVN-GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERIN 545 (642)
Q Consensus 467 ~~~-g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 545 (642)
+.. +.. .+.++........+.|||||++|+|..... +..+|+++|+++++.++++... . ...
T Consensus 312 ~~~~g~~---~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~-----g~~~I~v~dl~~g~~~~Lt~~~--~-------~~~ 374 (428)
T PRK01029 312 IDPEGQS---PRLLTKKYRNSSCPAWSPDGKKIAFCSVIK-----GVRQICVYDLATGRDYQLTTSP--E-------NKE 374 (428)
T ss_pred Ccccccc---eEEeccCCCCccceeECCCCCEEEEEEcCC-----CCcEEEEEECCCCCeEEccCCC--C-------Ccc
Confidence 853 222 477776655667899999999999998754 3467999999999998887532 1 246
Q ss_pred ceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCC
Q 039497 546 HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGN 611 (642)
Q Consensus 546 ~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg 611 (642)
.+.|||||+.|+|.+...+. ..||.+++++++.++|+...+....|+|||-.
T Consensus 375 ~p~wSpDG~~L~f~~~~~g~--------------~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 375 SPSWAIDSLHLVYSAGNSNE--------------SELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred ceEECCCCCEEEEEECCCCC--------------ceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 79999999999998876543 38999999999999999877777899999854
No 4
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.94 E-value=4.9e-25 Score=228.49 Aligned_cols=265 Identities=20% Similarity=0.259 Sum_probs=190.7
Q ss_pred cceEEEEeecCC----ceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCe--EEEEEccCCCcceEEEcCC
Q 039497 4 KGTIVFTTVGRP----YYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQT--IAFISERSGSPRIYQTRPG 77 (642)
Q Consensus 4 ~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~--laf~~~~~g~~~l~~~~~~ 77 (642)
+++|||+..... .+...||+++..| +.+++||...+....|+|| |||+. ++|++.+.|..+
T Consensus 146 ~~~iayv~~~~~~~~~~~~~~l~~~d~dG-----~~~~~lt~~~~~~~sP~wS-PDG~~~~~~y~S~~~g~~~------- 212 (428)
T PRK01029 146 SGKIIFSLSTTNSDTELKQGELWSVDYDG-----QNLRPLTQEHSLSITPTWM-HIGSGFPYLYVSYKLGVPK------- 212 (428)
T ss_pred cCEEEEEEeeCCcccccccceEEEEcCCC-----CCceEcccCCCCcccceEc-cCCCceEEEEEEccCCCce-------
Confidence 688999955321 1246899999999 9999999998889999999 99987 555776555443
Q ss_pred CCcccccCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEE
Q 039497 78 SSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVA 157 (642)
Q Consensus 78 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~ 157 (642)
||++++.+|+.++|+........|+|||||++|||.
T Consensus 213 --------------------------------------------I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~ 248 (428)
T PRK01029 213 --------------------------------------------IFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFI 248 (428)
T ss_pred --------------------------------------------EEEEECCCCCceEeecCCCCccceEECCCCCEEEEE
Confidence 555567777778888776667789999999999999
Q ss_pred ecCCCCCCCCCCCCeeeEEEE--EecC---CCceeEeecC-C--CcceEeeCCe-EEEEEecCCCceEEEEEecCCCccc
Q 039497 158 SYESRPWPGEFHELNTDIVVF--QESD---PNKRVIVCER-G--GWPTWSGDST-IYFHRQADDGWWSIFRVSFPENLEF 228 (642)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~--~~~~---g~~~~l~~~~-~--~~~~wspdg~-~~~~~~~~~g~~~l~~~~~~~~~~~ 228 (642)
.... +..++|+. ++.+ ++.++++... + ..|.|||||+ ++|+. ..+|..+||.++..+...
T Consensus 249 s~~~---------g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s-~~~g~~~ly~~~~~~~g~- 317 (428)
T PRK01029 249 SDRY---------GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVS-NKDGRPRIYIMQIDPEGQ- 317 (428)
T ss_pred ECCC---------CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEE-CCCCCceEEEEECccccc-
Confidence 8654 34467774 5554 4667787543 2 4689999995 66666 556778999998753210
Q ss_pred ccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCC
Q 039497 229 LGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEG 308 (642)
Q Consensus 229 ~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~ 308 (642)
..++++........++|||||++|+|+....+ ...|+++|+..+. .
T Consensus 318 -----~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g--~~~I~v~dl~~g~--------------~------------- 363 (428)
T PRK01029 318 -----SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKG--VRQICVYDLATGR--------------D------------- 363 (428)
T ss_pred -----ceEEeccCCCCccceeECCCCCEEEEEEcCCC--CcEEEEEECCCCC--------------e-------------
Confidence 45677766555678999999999999765543 3467777662211 0
Q ss_pred CcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCC
Q 039497 309 QSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTE 384 (642)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg 384 (642)
..++........+.|+|||+.|+|.....+...||++++++++.++++. .+....+.|||-.
T Consensus 364 --------------~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 364 --------------YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred --------------EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 0000000112357999999999998776677899999999999888876 4557789999854
No 5
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.94 E-value=1.4e-24 Score=226.31 Aligned_cols=246 Identities=15% Similarity=0.196 Sum_probs=189.0
Q ss_pred cceEeeccCCCc-eeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEE
Q 039497 312 IPHLEPVASPVK-ELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIY 389 (642)
Q Consensus 312 ~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~ 389 (642)
.+|+.+.++... .++........|.|||||++|+|.+...+..+|+++++++++.+.+.. .+....+.|||||++|+|
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~ 259 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAF 259 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEE
Confidence 456666555432 222111123578999999999998766677899999999998777765 455678999999999999
Q ss_pred EEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC
Q 039497 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN 469 (642)
Q Consensus 390 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~ 469 (642)
+... .+...||.++. + ++ ..++++... .....+.|||||++|+|.+.+.+..+||++++.+
T Consensus 260 ~~~~------~g~~~I~~~d~--~-----tg-----~~~~lt~~~-~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 260 ALSK------TGSLNLYVMDL--A-----SG-----QIRQVTDGR-SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred EEcC------CCCcEEEEEEC--C-----CC-----CEEEccCCC-CCcCceEECCCCCEEEEEeCCCCCceEEEEECCC
Confidence 8642 33334555554 2 33 667777665 5677899999999999999888888999999998
Q ss_pred CccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEE
Q 039497 470 GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCF 549 (642)
Q Consensus 470 g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 549 (642)
|+. ++++........+.|||||++|+|.+... +..+|+++|+++++.+.++... . ...+.|
T Consensus 321 g~~----~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-----g~~~I~~~dl~~g~~~~Lt~~~-~---------~~~p~~ 381 (429)
T PRK03629 321 GAP----QRITWEGSQNQDADVSSDGKFMVMVSSNG-----GQQHIAKQDLATGGVQVLTDTF-L---------DETPSI 381 (429)
T ss_pred CCe----EEeecCCCCccCEEECCCCCEEEEEEccC-----CCceEEEEECCCCCeEEeCCCC-C---------CCCceE
Confidence 874 77776555556789999999999988654 3467999999999988887422 1 247899
Q ss_pred cCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEec
Q 039497 550 SADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609 (642)
Q Consensus 550 S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~ 609 (642)
||||+.|+|.+.+++. ..|++++++|+..++|+.+.+....|+|||
T Consensus 382 SpDG~~i~~~s~~~~~--------------~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 382 APNGTMVIYSSSQGMG--------------SVLNLVSTDGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCCCEEEEEEcCCCc--------------eEEEEEECCCCCeEECccCCCCcCCcccCC
Confidence 9999999999987653 279999999999999988777788999997
No 6
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.94 E-value=3.1e-24 Score=223.93 Aligned_cols=226 Identities=25% Similarity=0.391 Sum_probs=181.7
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
..++|||||++|+|.+...+..+||++|+.+++.+++.. .+....+.|||||++|++... .++..+||.++.
T Consensus 199 ~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~------~~g~~~Iy~~d~- 271 (427)
T PRK02889 199 ISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALS------RDGNSQIYTVNA- 271 (427)
T ss_pred ccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEc------cCCCceEEEEEC-
Confidence 578999999999998876667889999999998777764 555678999999999998764 255678888876
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeE
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~ 491 (642)
+ ++ ..++++... .....+.|||||++|+|.+++.+..+||.+++.+++. +.++........+.|
T Consensus 272 -~-----~~-----~~~~lt~~~-~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~----~~lt~~g~~~~~~~~ 335 (427)
T PRK02889 272 -D-----GS-----GLRRLTQSS-GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA----QRVTFTGSYNTSPRI 335 (427)
T ss_pred -C-----CC-----CcEECCCCC-CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce----EEEecCCCCcCceEE
Confidence 3 33 567777655 5567799999999999999888888999999987763 666544344557899
Q ss_pred ecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCC
Q 039497 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS 571 (642)
Q Consensus 492 spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~ 571 (642)
||||++|+|.+..+ +..+|+++|+.+++.+.++... ....+.|||||+.|+|.+.+++..
T Consensus 336 SpDG~~Ia~~s~~~-----g~~~I~v~d~~~g~~~~lt~~~----------~~~~p~~spdg~~l~~~~~~~g~~----- 395 (427)
T PRK02889 336 SPDGKLLAYISRVG-----GAFKLYVQDLATGQVTALTDTT----------RDESPSFAPNGRYILYATQQGGRS----- 395 (427)
T ss_pred CCCCCEEEEEEccC-----CcEEEEEEECCCCCeEEccCCC----------CccCceECCCCCEEEEEEecCCCE-----
Confidence 99999999988764 3468999999999888876432 125789999999999999877643
Q ss_pred CCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecC
Q 039497 572 WPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPG 610 (642)
Q Consensus 572 ~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~d 610 (642)
.|+.+++++...++++...+....|+|||-
T Consensus 396 ---------~l~~~~~~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 396 ---------VLAAVSSDGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ---------EEEEEECCCCceEEeecCCCCCCCCccCCC
Confidence 799999988778888776677889999983
No 7
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.94 E-value=3.5e-24 Score=224.76 Aligned_cols=228 Identities=27% Similarity=0.425 Sum_probs=180.9
Q ss_pred CCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 332 GSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 332 ~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
...+.|||||++|+|.+...+..+||++++.+++.++++. .+....+.|||||++|+|.... ++...||.++.
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~------~g~~~Iy~~d~ 277 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQ------GGNTDIYTMDL 277 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEec------CCCceEEEEEC
Confidence 3578999999999999876677899999999998877765 5566789999999999988642 44566777766
Q ss_pred ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccccee
Q 039497 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS 490 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~ 490 (642)
+ ++ ..++|+... .....+.|||||++|+|.+.+.+..+||++|+.+++ .+.++........+.
T Consensus 278 --~-----~~-----~~~~Lt~~~-~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~----~~~lt~~~~~~~~~~ 340 (435)
T PRK05137 278 --R-----SG-----TTTRLTDSP-AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN----PRRISFGGGRYSTPV 340 (435)
T ss_pred --C-----CC-----ceEEccCCC-CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC----eEEeecCCCcccCeE
Confidence 3 33 667787766 566779999999999999988888899999998777 478876555567799
Q ss_pred EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCC
Q 039497 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV 570 (642)
Q Consensus 491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~ 570 (642)
|||||++|+|..... +..+|+++|++++..+.++.. . ....+.|||||+.|+|.+...+..
T Consensus 341 ~SpdG~~ia~~~~~~-----~~~~i~~~d~~~~~~~~lt~~-~---------~~~~p~~spDG~~i~~~~~~~~~~---- 401 (435)
T PRK05137 341 WSPRGDLIAFTKQGG-----GQFSIGVMKPDGSGERILTSG-F---------LVEGPTWAPNGRVIMFFRQTPGSG---- 401 (435)
T ss_pred ECCCCCEEEEEEcCC-----CceEEEEEECCCCceEeccCC-C---------CCCCCeECCCCCEEEEEEccCCCC----
Confidence 999999999988654 346899999988877766542 1 236799999999999988765320
Q ss_pred CCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEec
Q 039497 571 SWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609 (642)
Q Consensus 571 ~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~ 609 (642)
....||.++++++..++|+. .+....|+|||
T Consensus 402 -------~~~~L~~~dl~g~~~~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 402 -------GAPKLYTVDLTGRNEREVPT-PGDASDPAWSP 432 (435)
T ss_pred -------CcceEEEEECCCCceEEccC-CCCccCcccCC
Confidence 01379999999988888885 45678999987
No 8
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.94 E-value=6.6e-24 Score=218.27 Aligned_cols=248 Identities=18% Similarity=0.184 Sum_probs=187.1
Q ss_pred ccceEeeccCCCceeEEeeeCCCccEEcCCCCE-EEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEE
Q 039497 311 TIPHLEPVASPVKELRMLRLNGSFPSFSPDGGL-IVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVI 388 (642)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~ 388 (642)
..+++.+.++...+..........|.|||||++ ++|.+...+..+||++|+.+++.++++. .+....+.|||||++|+
T Consensus 169 ~~l~~~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la 248 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLL 248 (419)
T ss_pred ceEEEECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEE
Confidence 345555555553332122112246899999996 6666665457899999999999888876 44456789999999999
Q ss_pred EEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC
Q 039497 389 YTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV 468 (642)
Q Consensus 389 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~ 468 (642)
|.... .+...||.++. + ++ ..++|+... .....+.|||||++|+|.+++.+..+||++++.
T Consensus 249 ~~~~~------~g~~~Iy~~dl--~-----~g-----~~~~LT~~~-~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~ 309 (419)
T PRK04043 249 LTMAP------KGQPDIYLYDT--N-----TK-----TLTQITNYP-GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN 309 (419)
T ss_pred EEEcc------CCCcEEEEEEC--C-----CC-----cEEEcccCC-CccCccEECCCCCEEEEEECCCCCceEEEEECC
Confidence 98753 34566777765 3 34 678888766 556678999999999999999888999999999
Q ss_pred CCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCC-CceeEEEEeCCCCceEEeeecCCCCCCCcccccccce
Q 039497 469 NGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV-EAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV 547 (642)
Q Consensus 469 ~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 547 (642)
+|+. ++++..... .+.|||||++|+|.......... +..+||++|++++..+.|+.... ...+
T Consensus 310 ~g~~----~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~----------~~~p 373 (419)
T PRK04043 310 SGSV----EQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGV----------NQFP 373 (419)
T ss_pred CCCe----EeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCC----------cCCe
Confidence 8884 777754222 46999999999999875431111 23689999999999999886432 2469
Q ss_pred EEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEE
Q 039497 548 CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607 (642)
Q Consensus 548 ~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~ 607 (642)
.|||||+.|+|.+..++. ..|+.++++|....+|....+.+..|+|
T Consensus 374 ~~SPDG~~I~f~~~~~~~--------------~~L~~~~l~g~~~~~l~~~~g~~~~p~W 419 (419)
T PRK04043 374 RFSSDGGSIMFIKYLGNQ--------------SALGIIRLNYNKSFLFPLKVGKIQSIDW 419 (419)
T ss_pred EECCCCCEEEEEEccCCc--------------EEEEEEecCCCeeEEeecCCCccCCCCC
Confidence 999999999999887654 3899999999888888876777788877
No 9
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.94 E-value=7.9e-24 Score=221.37 Aligned_cols=225 Identities=20% Similarity=0.274 Sum_probs=180.2
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
..+.|||||++|+|.....+..+||++|+++++.++++. .+....+.|||||++|+|+... ++...||.++.
T Consensus 221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~------~g~~~Iy~~dl- 293 (448)
T PRK04792 221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSK------DGQPEIYVVDI- 293 (448)
T ss_pred cCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeC------CCCeEEEEEEC-
Confidence 578999999999998876677899999999988777765 4445688999999999998642 45566777766
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeE
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~ 491 (642)
+ ++ ..++++... .....+.|||||++|+|.+.+.+..+||++++.+|+. +.|+........+.|
T Consensus 294 -~-----tg-----~~~~lt~~~-~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~----~~Lt~~g~~~~~~~~ 357 (448)
T PRK04792 294 -A-----TK-----ALTRITRHR-AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV----SRLTFEGEQNLGGSI 357 (448)
T ss_pred -C-----CC-----CeEECccCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEEecCCCCCcCeeE
Confidence 3 33 667777665 5567799999999999999888888999999998884 777643334456899
Q ss_pred ecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCC
Q 039497 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS 571 (642)
Q Consensus 492 spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~ 571 (642)
||||++|+|.+... +..+|+++|+++++.+.++.... ...+.|+|||+.|+|.+..++..
T Consensus 358 SpDG~~l~~~~~~~-----g~~~I~~~dl~~g~~~~lt~~~~----------d~~ps~spdG~~I~~~~~~~g~~----- 417 (448)
T PRK04792 358 TPDGRSMIMVNRTN-----GKFNIARQDLETGAMQVLTSTRL----------DESPSVAPNGTMVIYSTTYQGKQ----- 417 (448)
T ss_pred CCCCCEEEEEEecC-----CceEEEEEECCCCCeEEccCCCC----------CCCceECCCCCEEEEEEecCCce-----
Confidence 99999999987654 45679999999998887764321 23679999999999999876542
Q ss_pred CCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEec
Q 039497 572 WPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609 (642)
Q Consensus 572 ~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~ 609 (642)
.||.++.+++..++++...+....|+|||
T Consensus 418 ---------~l~~~~~~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 418 ---------VLAAVSIDGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ---------EEEEEECCCCceEECcCCCCCcCCCccCC
Confidence 79999999988888987767778999998
No 10
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.94 E-value=4.9e-24 Score=222.12 Aligned_cols=259 Identities=18% Similarity=0.304 Sum_probs=192.9
Q ss_pred ceEEEEeec-CCceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccc
Q 039497 5 GTIVFTTVG-RPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTEL 83 (642)
Q Consensus 5 ~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~ 83 (642)
++|||+... +..+...||+++..| ...++||.+......|+|| |||++|||.+...+..
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg-----~~~~~lt~~~~~~~~p~wS-PDG~~la~~s~~~g~~-------------- 223 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDG-----YNQFVVHRSPQPLMSPAWS-PDGSKLAYVTFESGRS-------------- 223 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCC-----CCCEEeecCCCceeeeEEc-CCCCEEEEEEecCCCc--------------
Confidence 678999663 223456899999999 8899999998899999999 9999999987543333
Q ss_pred cCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCC
Q 039497 84 LPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRP 163 (642)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~ 163 (642)
+||++++.+|+.++|+........|+|||||++|||.....
T Consensus 224 -------------------------------------~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~-- 264 (429)
T PRK03629 224 -------------------------------------ALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT-- 264 (429)
T ss_pred -------------------------------------EEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCC--
Confidence 35555667777777776655566799999999999986543
Q ss_pred CCCCCCCCeeeEEEEEecCCCceeEeecCC--CcceEeeCCe-EEEEEecCCCceEEEEEecCCCcccccCCccceeeCC
Q 039497 164 WPGEFHELNTDIVVFQESDPNKRVIVCERG--GWPTWSGDST-IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTP 240 (642)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~wspdg~-~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~ 240 (642)
+..+||++++++++.++++.... ..+.|+|||+ ++|+. +..+..+||.+++.++ ..++++.
T Consensus 265 -------g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s-~~~g~~~Iy~~d~~~g--------~~~~lt~ 328 (429)
T PRK03629 265 -------GSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTS-DQAGRPQVYKVNINGG--------APQRITW 328 (429)
T ss_pred -------CCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEe-CCCCCceEEEEECCCC--------CeEEeec
Confidence 34579999999999998887543 4689999996 55666 5567789999999988 6677766
Q ss_pred CCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC
Q 039497 241 PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS 320 (642)
Q Consensus 241 ~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 320 (642)
.+.....+.|||||++|++.....+ ...++++|+..+.
T Consensus 329 ~~~~~~~~~~SpDG~~Ia~~~~~~g--~~~I~~~dl~~g~---------------------------------------- 366 (429)
T PRK03629 329 EGSQNQDADVSSDGKFMVMVSSNGG--QQHIAKQDLATGG---------------------------------------- 366 (429)
T ss_pred CCCCccCEEECCCCCEEEEEEccCC--CceEEEEECCCCC----------------------------------------
Confidence 5545567899999999999765433 2356666652110
Q ss_pred CCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeec
Q 039497 321 PVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSP 382 (642)
Q Consensus 321 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~sp 382 (642)
...++ .......+.|||||++|+|.....+...|+++++++...+.+.. .+.+..++|||
T Consensus 367 -~~~Lt-~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 367 -VQVLT-DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred -eEEeC-CCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCcccCC
Confidence 00000 00122367999999999998876666789999999988777765 56678899997
No 11
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.93 E-value=1.3e-23 Score=220.19 Aligned_cols=225 Identities=24% Similarity=0.332 Sum_probs=177.7
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
..+.|||||++|+|.+...+..+||++++++++.+++.. .+....+.|||||++|+|.... ++...||.++.
T Consensus 207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~------~g~~~Iy~~d~- 279 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSR------DGNPEIYVMDL- 279 (433)
T ss_pred ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeC------CCCceEEEEEC-
Confidence 578999999999998876677899999999988777765 4455678999999999987642 33344555554
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeE
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~ 491 (642)
+ ++ ..++++... .....+.|||||++|+|.+++.+..+||++++.+++. +.++........++|
T Consensus 280 -~-----~g-----~~~~lt~~~-~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~----~~lt~~g~~~~~~~~ 343 (433)
T PRK04922 280 -G-----SR-----QLTRLTNHF-GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA----ERLTFQGNYNARASV 343 (433)
T ss_pred -C-----CC-----CeEECccCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe----EEeecCCCCccCEEE
Confidence 2 33 567777655 4556799999999999999888888999999988874 777654444557899
Q ss_pred ecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCC
Q 039497 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS 571 (642)
Q Consensus 492 spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~ 571 (642)
||||++|+|.+... +..+|+++|+.+++.+.++... . ...+.|||||+.|+|.+...+.
T Consensus 344 SpDG~~Ia~~~~~~-----~~~~I~v~d~~~g~~~~Lt~~~-~---------~~~p~~spdG~~i~~~s~~~g~------ 402 (433)
T PRK04922 344 SPDGKKIAMVHGSG-----GQYRIAVMDLSTGSVRTLTPGS-L---------DESPSFAPNGSMVLYATREGGR------ 402 (433)
T ss_pred CCCCCEEEEEECCC-----CceeEEEEECCCCCeEECCCCC-C---------CCCceECCCCCEEEEEEecCCc------
Confidence 99999999987643 3458999999999888777532 1 2468999999999999987543
Q ss_pred CCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEec
Q 039497 572 WPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609 (642)
Q Consensus 572 ~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~ 609 (642)
..||.++++++..++|+...+....|+|||
T Consensus 403 --------~~L~~~~~~g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 403 --------GVLAAVSTDGRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred --------eEEEEEECCCCceEEcccCCCCCCCCccCC
Confidence 389999999988888987767778999987
No 12
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.93 E-value=2e-23 Score=219.60 Aligned_cols=226 Identities=18% Similarity=0.283 Sum_probs=179.5
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
..+.|||||++|+|++...+..+||++++++++.+++.. .+....+.|||||++|+|.... .+...||.++.
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~------~g~~~Iy~~d~- 274 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSK------DGNPEIYVMDL- 274 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEcc------CCCceEEEEEC-
Confidence 467999999999998876677899999999998877765 4455679999999999988742 33455666665
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeE
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~ 491 (642)
+ ++ ..++++... .....+.|||||++|+|.+++.+..+||++++.+|+. ++++........+.|
T Consensus 275 -~-----~~-----~~~~lt~~~-~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~----~~lt~~~~~~~~~~~ 338 (430)
T PRK00178 275 -A-----SR-----QLSRVTNHP-AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA----ERVTFVGNYNARPRL 338 (430)
T ss_pred -C-----CC-----CeEEcccCC-CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEeecCCCCccceEE
Confidence 3 33 567777665 5667799999999999999888888999999998884 666644444557899
Q ss_pred ecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCC
Q 039497 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS 571 (642)
Q Consensus 492 spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~ 571 (642)
||||++|+|..... +..+|+++|+++++.+.++.... ...+.|||||+.|+|++.+++.
T Consensus 339 Spdg~~i~~~~~~~-----~~~~l~~~dl~tg~~~~lt~~~~----------~~~p~~spdg~~i~~~~~~~g~------ 397 (430)
T PRK00178 339 SADGKTLVMVHRQD-----GNFHVAAQDLQRGSVRILTDTSL----------DESPSVAPNGTMLIYATRQQGR------ 397 (430)
T ss_pred CCCCCEEEEEEccC-----CceEEEEEECCCCCEEEccCCCC----------CCCceECCCCCEEEEEEecCCc------
Confidence 99999999998654 34579999999998888875321 2367999999999999987654
Q ss_pred CCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecC
Q 039497 572 WPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPG 610 (642)
Q Consensus 572 ~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~d 610 (642)
..||.++++++..++|+...+....|+|||-
T Consensus 398 --------~~l~~~~~~g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 398 --------GVLMLVSINGRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred --------eEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence 3899999999888788866677789999973
No 13
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.92 E-value=4.7e-23 Score=216.28 Aligned_cols=241 Identities=23% Similarity=0.291 Sum_probs=181.8
Q ss_pred cceEEEEeecCC--ceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcc
Q 039497 4 KGTIVFTTVGRP--YYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKT 81 (642)
Q Consensus 4 ~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~ 81 (642)
..+|+|+..... .....||+++..| ...++||.+......|+|| |||++|||.+...|..+||+++..+...
T Consensus 165 ~~~iafv~~~~~~~~~~~~l~~~d~dg-----~~~~~lt~~~~~v~~p~wS-pDG~~lay~s~~~g~~~i~~~dl~~g~~ 238 (435)
T PRK05137 165 DTRIVYVAESGPKNKRIKRLAIMDQDG-----ANVRYLTDGSSLVLTPRFS-PNRQEITYMSYANGRPRVYLLDLETGQR 238 (435)
T ss_pred CCeEEEEEeeCCCCCcceEEEEECCCC-----CCcEEEecCCCCeEeeEEC-CCCCEEEEEEecCCCCEEEEEECCCCcE
Confidence 457999966322 1245999999998 8899999999999999999 9999999999877888999997655444
Q ss_pred cccCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCC
Q 039497 82 ELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYES 161 (642)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~ 161 (642)
..+............+.+|+.|+|+...+.. .+||.+++.+++.++|+........|+|||||++|+|.++..
T Consensus 239 ~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~-------~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~ 311 (435)
T PRK05137 239 ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGN-------TDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRS 311 (435)
T ss_pred EEeecCCCcccCcEECCCCCEEEEEEecCCC-------ceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCC
Confidence 4444333322222334478889888764321 279999999999999998887778899999999999998654
Q ss_pred CCCCCCCCCCeeeEEEEEecCCCceeEeecCC--CcceEeeCCe-EEEEEecCCCceEEEEEecCCCcccccCCccceee
Q 039497 162 RPWPGEFHELNTDIVVFQESDPNKRVIVCERG--GWPTWSGDST-IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRV 238 (642)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~wspdg~-~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l 238 (642)
+..+||++++.+++.++++...+ ..+.|||||+ ++|+. ...+...|+.+++.++ ....+
T Consensus 312 ---------g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~-~~~~~~~i~~~d~~~~--------~~~~l 373 (435)
T PRK05137 312 ---------GSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTK-QGGGQFSIGVMKPDGS--------GERIL 373 (435)
T ss_pred ---------CCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEE-cCCCceEEEEEECCCC--------ceEec
Confidence 45689999999999999987543 3579999996 44554 4455679999998776 44555
Q ss_pred CCCCCccccceeecCCcEEEEEEeccCCce-eeEEEEEe
Q 039497 239 TPPGVHCFTPAAFHDGKRLAVATRRKNRNF-RHIEIYDL 276 (642)
Q Consensus 239 ~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~-~~i~~~d~ 276 (642)
+.. .....+.|||||+.|+|.....+... ..++++|+
T Consensus 374 t~~-~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 374 TSG-FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred cCC-CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 543 34678999999999999876543322 46788877
No 14
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.92 E-value=2.4e-20 Score=181.40 Aligned_cols=491 Identities=12% Similarity=0.069 Sum_probs=275.2
Q ss_pred CcceEEEEeecCCceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcC-CCCcc
Q 039497 3 PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRP-GSSKT 81 (642)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~-~g~~~ 81 (642)
.|+.|+|. .+.-+++.++.- + ..+...|.|....--+++| |.|-++| ..+..|..+||...- +.-.-
T Consensus 29 kgd~ilY~------nGksv~ir~i~~-~---~~~~iYtEH~~~vtVAkyS-PsG~yiA-SGD~sG~vRIWdtt~~~hiLK 96 (603)
T KOG0318|consen 29 KGDNILYT------NGKSVIIRNIDN-P---ASVDIYTEHAHQVTVAKYS-PSGFYIA-SGDVSGKVRIWDTTQKEHILK 96 (603)
T ss_pred CCCeEEEe------CCCEEEEEECCC-c---cceeeeccccceeEEEEeC-CCceEEe-ecCCcCcEEEEeccCcceeee
Confidence 57889999 788899999985 3 4578899999999999999 9999999 677789999998721 11000
Q ss_pred cccCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCc-EEEEEecC
Q 039497 82 ELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGK-FIAVASYE 160 (642)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~-~la~~~~~ 160 (642)
.......+.--.-....++++|+.+..+... .+..+..+.- ...-.++.+........|-|.-- +|+..+++
T Consensus 97 nef~v~aG~I~Di~Wd~ds~RI~avGEGrer------fg~~F~~DSG-~SvGei~GhSr~ins~~~KpsRPfRi~T~sdD 169 (603)
T KOG0318|consen 97 NEFQVLAGPIKDISWDFDSKRIAAVGEGRER------FGHVFLWDSG-NSVGEITGHSRRINSVDFKPSRPFRIATGSDD 169 (603)
T ss_pred eeeeecccccccceeCCCCcEEEEEecCccc------eeEEEEecCC-CccceeeccceeEeeeeccCCCceEEEeccCC
Confidence 0011000000000123378888888775432 3466665532 22333444333333444444333 25555554
Q ss_pred CCCCCCCCCCCeeeEEEEEecCCCceeEeec---CC---CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCcc
Q 039497 161 SRPWPGEFHELNTDIVVFQESDPNKRVIVCE---RG---GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIA 234 (642)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~---~~---~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~ 234 (642)
. .+-++ .|.+.+.... +. ....|+|||..+++. +.|| +++.+|-.+++ +
T Consensus 170 n------------~v~ff---eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~-gsDg--ki~iyDGktge-------~ 224 (603)
T KOG0318|consen 170 N------------TVAFF---EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATA-GSDG--KIYIYDGKTGE-------K 224 (603)
T ss_pred C------------eEEEe---eCCCeeeeecccccccceeeEEECCCCCeEEEe-cCCc--cEEEEcCCCcc-------E
Confidence 4 22222 2333333321 11 245999999888887 5677 88888888874 4
Q ss_pred ceeeC---CCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeec---------------------------------
Q 039497 235 PTRVT---PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL--------------------------------- 278 (642)
Q Consensus 235 ~~~l~---~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~--------------------------------- 278 (642)
...+. .+...++.++||||+++++.++.++ .+.+||+.+
T Consensus 225 vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk-----t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~ 299 (603)
T KOG0318|consen 225 VGELEDSDAHKGSIFALSWSPDSTQFLTVSADK-----TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLS 299 (603)
T ss_pred EEEecCCCCccccEEEEEECCCCceEEEecCCc-----eEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcC
Confidence 55555 4566888999999999999976555 788888821
Q ss_pred ------------------CCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCC--CccEEc
Q 039497 279 ------------------NPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNG--SFPSFS 338 (642)
Q Consensus 279 ------------------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s 338 (642)
+++-.+..+..+||+++|+....+|- ...|.... +....+.-..... ..+.-+
T Consensus 300 G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~------I~~W~~~~-g~~~~~~g~~h~nqI~~~~~~ 372 (603)
T KOG0318|consen 300 GTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH------INSWDSGS-GTSDRLAGKGHTNQIKGMAAS 372 (603)
T ss_pred cEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce------EEEEecCC-ccccccccccccceEEEEeec
Confidence 12222333344444444444333332 11111100 0000000000000 001111
Q ss_pred CCCCEEEEEecCCCceeEEEEECCCCCeeE---EeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCC
Q 039497 339 PDGGLIVFNHDFELNAGIKIAKSDGSKRWT---LIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS 415 (642)
Q Consensus 339 pdg~~l~~~~~~~~~~~l~~~d~~~~~~~~---l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 415 (642)
..+. |+..+. ...|++.++.++.... +....-...++..+|+..++.+. ...+.|..- .
T Consensus 373 ~~~~-~~t~g~---Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~--------~~~iv~l~~-~----- 434 (603)
T KOG0318|consen 373 ESGE-LFTIGW---DDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVAC--------ISDIVLLQD-Q----- 434 (603)
T ss_pred CCCc-EEEEec---CCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEe--------cCcEEEEec-C-----
Confidence 1121 222211 2345555543322111 11122233566777776666665 233333321 1
Q ss_pred CCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCC
Q 039497 416 DDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495 (642)
Q Consensus 416 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG 495 (642)
+ ....+... ......+++||++.++.... ++ .|+++.+.+++. .+...+..+.+.+..++|||||
T Consensus 435 ----~-----~~~~~~~~--y~~s~vAv~~~~~~vaVGG~-Dg--kvhvysl~g~~l-~ee~~~~~h~a~iT~vaySpd~ 499 (603)
T KOG0318|consen 435 ----T-----KVSSIPIG--YESSAVAVSPDGSEVAVGGQ-DG--KVHVYSLSGDEL-KEEAKLLEHRAAITDVAYSPDG 499 (603)
T ss_pred ----C-----cceeeccc--cccceEEEcCCCCEEEEecc-cc--eEEEEEecCCcc-cceeeeecccCCceEEEECCCC
Confidence 1 22222221 34567899999999987764 34 466666665442 1134566677888999999999
Q ss_pred CEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCC
Q 039497 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQ 575 (642)
Q Consensus 496 ~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~ 575 (642)
.+|+....... +.+||+.+.+.....-.-+.. .+..++|||+.+.++..+-+.
T Consensus 500 ~yla~~Da~rk--------vv~yd~~s~~~~~~~w~FHta-------kI~~~aWsP~n~~vATGSlDt------------ 552 (603)
T KOG0318|consen 500 AYLAAGDASRK--------VVLYDVASREVKTNRWAFHTA-------KINCVAWSPNNKLVATGSLDT------------ 552 (603)
T ss_pred cEEEEeccCCc--------EEEEEcccCceecceeeeeee-------eEEEEEeCCCceEEEeccccc------------
Confidence 99988876654 899999887663211111223 567899999999888877664
Q ss_pred CCCCCcEEEEEcCCCc--eeeccCCCCCCCCcEEecCCceE
Q 039497 576 FQPYGDLYVVKLDGSG--LRRLTWNGYENGTPAWHPGNQLD 614 (642)
Q Consensus 576 ~~~~~~l~~~~~~~~~--~~~lt~~~~~~~~~~~s~dg~~~ 614 (642)
.|+.|+++... ++-.-.+...+..+.|-.+..++
T Consensus 553 -----~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvv 588 (603)
T KOG0318|consen 553 -----NVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVV 588 (603)
T ss_pred -----eEEEEEccChhhheEeccccccCceeEEEecCceEE
Confidence 56666665533 33333455557888997665533
No 15
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.92 E-value=1.1e-22 Score=209.35 Aligned_cols=238 Identities=16% Similarity=0.153 Sum_probs=178.4
Q ss_pred ceEEEEeecCCceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCe-EEEEEccCCCcceEEEcCCCCcccc
Q 039497 5 GTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQT-IAFISERSGSPRIYQTRPGSSKTEL 83 (642)
Q Consensus 5 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~-laf~~~~~g~~~l~~~~~~g~~~~~ 83 (642)
.+|+|+.........+||+++..| ...+++|.+. ....|+|| |||++ ++|++.+.+..+||+++..+...+.
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg-----~~~~~~~~~~-~~~~p~wS-pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~ 227 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTL-----TYQKVIVKGG-LNIFPKWA-NKEQTAFYYTSYGERKPTLYKYNLYTGKKEK 227 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCC-----CceeEEccCC-CeEeEEEC-CCCCcEEEEEEccCCCCEEEEEECCCCcEEE
Confidence 467777552211356999999999 8888898875 88899999 99996 7777765567899999766544455
Q ss_pred cCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCC
Q 039497 84 LPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRP 163 (642)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~ 163 (642)
+............+.+|++|+|+...... .+||.+++.+++.++||.....+..|.|||||++|+|.+++.
T Consensus 228 lt~~~g~~~~~~~SPDG~~la~~~~~~g~-------~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~-- 298 (419)
T PRK04043 228 IASSQGMLVVSDVSKDGSKLLLTMAPKGQ-------PDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRL-- 298 (419)
T ss_pred EecCCCcEEeeEECCCCCEEEEEEccCCC-------cEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCC--
Confidence 54433332222344478899998765321 389999999999999998877677899999999999998765
Q ss_pred CCCCCCCCeeeEEEEEecCCCceeEeecCCCcceEeeCCe-EEEEEecCC-----CceEEEEEecCCCcccccCCcccee
Q 039497 164 WPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDST-IYFHRQADD-----GWWSIFRVSFPENLEFLGFPIAPTR 237 (642)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~wspdg~-~~~~~~~~~-----g~~~l~~~~~~~~~~~~~~~~~~~~ 237 (642)
+..+||++++.+|+.++++......+.|||||+ ++|+....+ +..+|+.+++.++ ..++
T Consensus 299 -------g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g--------~~~~ 363 (419)
T PRK04043 299 -------GYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD--------YIRR 363 (419)
T ss_pred -------CCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC--------CeEE
Confidence 456999999999999899875434579999995 666653221 3479999999988 6788
Q ss_pred eCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEe
Q 039497 238 VTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL 276 (642)
Q Consensus 238 l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~ 276 (642)
|+..+ ....+.|||||+.|+|....++ ...+.++++
T Consensus 364 LT~~~-~~~~p~~SPDG~~I~f~~~~~~--~~~L~~~~l 399 (419)
T PRK04043 364 LTANG-VNQFPRFSSDGGSIMFIKYLGN--QSALGIIRL 399 (419)
T ss_pred CCCCC-CcCCeEECCCCCEEEEEEccCC--cEEEEEEec
Confidence 88764 3447999999999999876533 335666655
No 16
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=3.8e-22 Score=208.62 Aligned_cols=219 Identities=20% Similarity=0.260 Sum_probs=172.5
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
..+.|||||++|+|.+..++..+|+++|+.+++.+.+.. .+....+.|||||++|+++... ++...||.++.
T Consensus 207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~------~g~~~Iy~~d~- 279 (429)
T PRK01742 207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSK------DGVLNIYVMGA- 279 (429)
T ss_pred ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEec------CCcEEEEEEEC-
Confidence 578999999999998876667889999999888766665 4455689999999999998632 45567887776
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeE
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~ 491 (642)
+ ++ ..++++.+. .....+.|||||++|+|.+.+.+..+||.++..++.. +.+.. .. ..+.|
T Consensus 280 -~-----~~-----~~~~lt~~~-~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~----~~l~~-~~--~~~~~ 340 (429)
T PRK01742 280 -N-----GG-----TPSQLTSGA-GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA----SLVGG-RG--YSAQI 340 (429)
T ss_pred -C-----CC-----CeEeeccCC-CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe----EEecC-CC--CCccC
Confidence 3 33 667777765 6677899999999999999888889999999887663 55532 22 45789
Q ss_pred ecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCC
Q 039497 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS 571 (642)
Q Consensus 492 spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~ 571 (642)
||||++|++.+... ++++|+.+++.+.++.. .. ...+.|||||+.|++.+.+++.
T Consensus 341 SpDG~~ia~~~~~~---------i~~~Dl~~g~~~~lt~~-~~---------~~~~~~sPdG~~i~~~s~~g~~------ 395 (429)
T PRK01742 341 SADGKTLVMINGDN---------VVKQDLTSGSTEVLSST-FL---------DESPSISPNGIMIIYSSTQGLG------ 395 (429)
T ss_pred CCCCCEEEEEcCCC---------EEEEECCCCCeEEecCC-CC---------CCCceECCCCCEEEEEEcCCCc------
Confidence 99999999987633 88999999888776642 22 2468999999999999887654
Q ss_pred CCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecC
Q 039497 572 WPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPG 610 (642)
Q Consensus 572 ~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~d 610 (642)
..++.++.++...++|+.+.+....|+|||-
T Consensus 396 --------~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 396 --------KVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred --------eEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 2566778889889999887777789999984
No 17
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=3e-22 Score=209.01 Aligned_cols=229 Identities=24% Similarity=0.407 Sum_probs=178.4
Q ss_pred CEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCC
Q 039497 342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR 420 (642)
Q Consensus 342 ~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 420 (642)
.+|+|+....+..+||++|.++...++++. ...+..+.|||||++|+|++.. .+...+.++++.. +
T Consensus 164 ~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~----~~~~~I~~~dl~~---------g 230 (427)
T PRK02889 164 TRIAYVIKTGNRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFE----SKKPVVYVHDLAT---------G 230 (427)
T ss_pred cEEEEEEccCCccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEcc----CCCcEEEEEECCC---------C
Confidence 568998765566899999999888777765 5667899999999999999853 2233455555432 3
Q ss_pred CccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEE
Q 039497 421 EEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500 (642)
Q Consensus 421 ~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~ 500 (642)
....++... +....+.|||||++|+|+..+++..+||++|+++++ .++|+........+.|||||++|+|
T Consensus 231 -----~~~~l~~~~-g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~----~~~lt~~~~~~~~~~wSpDG~~l~f 300 (427)
T PRK02889 231 -----RRRVVANFK-GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG----LRRLTQSSGIDTEPFFSPDGRSIYF 300 (427)
T ss_pred -----CEEEeecCC-CCccceEECCCCCEEEEEEccCCCceEEEEECCCCC----cEECCCCCCCCcCeEEcCCCCEEEE
Confidence 556666554 566789999999999998888888899999998777 4888877666778999999999999
Q ss_pred EecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCC
Q 039497 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG 580 (642)
Q Consensus 501 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 580 (642)
.+++. +..+||++++++++.++++..+. ....+.|||||++|+|.+..++. .
T Consensus 301 ~s~~~-----g~~~Iy~~~~~~g~~~~lt~~g~---------~~~~~~~SpDG~~Ia~~s~~~g~--------------~ 352 (427)
T PRK02889 301 TSDRG-----GAPQIYRMPASGGAAQRVTFTGS---------YNTSPRISPDGKLLAYISRVGGA--------------F 352 (427)
T ss_pred EecCC-----CCcEEEEEECCCCceEEEecCCC---------CcCceEECCCCCEEEEEEccCCc--------------E
Confidence 87654 45689999999888887774321 23468999999999999876543 2
Q ss_pred cEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeecCCCc
Q 039497 581 DLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLED 622 (642)
Q Consensus 581 ~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~~ 622 (642)
+|+++++.+++.++++... ....|.|+|||+.++...+.++
T Consensus 353 ~I~v~d~~~g~~~~lt~~~-~~~~p~~spdg~~l~~~~~~~g 393 (427)
T PRK02889 353 KLYVQDLATGQVTALTDTT-RDESPSFAPNGRYILYATQQGG 393 (427)
T ss_pred EEEEEECCCCCeEEccCCC-CccCceECCCCCEEEEEEecCC
Confidence 8999999999999998653 4479999999998877665553
No 18
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=9.5e-22 Score=205.71 Aligned_cols=228 Identities=21% Similarity=0.322 Sum_probs=176.0
Q ss_pred CEEEEEecCCC---ceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCC
Q 039497 342 GLIVFNHDFEL---NAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDD 417 (642)
Q Consensus 342 ~~l~~~~~~~~---~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 417 (642)
.+|+|+....+ ..+|+++|.++...+.++. ...+..+.|||||++|+|++.. .+...||.++. +
T Consensus 183 ~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~------~g~~~L~~~dl--~---- 250 (448)
T PRK04792 183 TRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFE------NRKAEIFVQDI--Y---- 250 (448)
T ss_pred CEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEec------CCCcEEEEEEC--C----
Confidence 56777654332 3689999999988777766 5567889999999999999853 33455666655 2
Q ss_pred CCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCE
Q 039497 418 NNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497 (642)
Q Consensus 418 ~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~ 497 (642)
++ +.+.++... +....+.|||||++|+|....++..+||++|+++++ .++++........+.|||||++
T Consensus 251 -tg-----~~~~lt~~~-g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~----~~~lt~~~~~~~~p~wSpDG~~ 319 (448)
T PRK04792 251 -TQ-----VREKVTSFP-GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA----LTRITRHRAIDTEPSWHPDGKS 319 (448)
T ss_pred -CC-----CeEEecCCC-CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC----eEECccCCCCccceEECCCCCE
Confidence 33 556666554 455679999999999998888888899999999888 4888877666778999999999
Q ss_pred EEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCC
Q 039497 498 IAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQ 577 (642)
Q Consensus 498 l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~ 577 (642)
|+|.+... +..+||++|+++++.+.++..+. ....+.|||||++|+|.+...+.
T Consensus 320 I~f~s~~~-----g~~~Iy~~dl~~g~~~~Lt~~g~---------~~~~~~~SpDG~~l~~~~~~~g~------------ 373 (448)
T PRK04792 320 LIFTSERG-----GKPQIYRVNLASGKVSRLTFEGE---------QNLGGSITPDGRSMIMVNRTNGK------------ 373 (448)
T ss_pred EEEEECCC-----CCceEEEEECCCCCEEEEecCCC---------CCcCeeECCCCCEEEEEEecCCc------------
Confidence 99998765 45789999999998888874322 22457999999999998765442
Q ss_pred CCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497 578 PYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 578 ~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
.+||.+++++++++.|+... ....|.|+|||++++...+.+
T Consensus 374 --~~I~~~dl~~g~~~~lt~~~-~d~~ps~spdG~~I~~~~~~~ 414 (448)
T PRK04792 374 --FNIARQDLETGAMQVLTSTR-LDESPSVAPNGTMVIYSTTYQ 414 (448)
T ss_pred --eEEEEEECCCCCeEEccCCC-CCCCceECCCCCEEEEEEecC
Confidence 38999999999988888653 446899999998886654444
No 19
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=1.6e-21 Score=204.45 Aligned_cols=228 Identities=25% Similarity=0.422 Sum_probs=174.1
Q ss_pred CEEEEEecCC----CceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCC
Q 039497 342 GLIVFNHDFE----LNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD 416 (642)
Q Consensus 342 ~~l~~~~~~~----~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 416 (642)
.+|+|+.... ...+|+++|.++...++++. ...+..+.|||||++|+|++.. .....+.++++.
T Consensus 168 ~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~----~~~~~l~~~dl~------- 236 (433)
T PRK04922 168 TRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFE----RGRSAIYVQDLA------- 236 (433)
T ss_pred ceEEEEEEeCCCCCceEEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecC----CCCcEEEEEECC-------
Confidence 5688865421 24679999999888888876 4567899999999999999853 223344444443
Q ss_pred CCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCC
Q 039497 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496 (642)
Q Consensus 417 ~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~ 496 (642)
++ ..+.++... +....+.|||||++|+|....++..+||++|+.+|+ +++++........+.|||||+
T Consensus 237 --~g-----~~~~l~~~~-g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~----~~~lt~~~~~~~~~~~spDG~ 304 (433)
T PRK04922 237 --TG-----QRELVASFR-GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ----LTRLTNHFGIDTEPTWAPDGK 304 (433)
T ss_pred --CC-----CEEEeccCC-CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC----eEECccCCCCccceEECCCCC
Confidence 23 556666554 556679999999999998877788899999999888 488887766667899999999
Q ss_pred EEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCC
Q 039497 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQF 576 (642)
Q Consensus 497 ~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~ 576 (642)
+|+|.+.+. +..+||++++++++.++++..+. ....++|||||++|+|.+..++.
T Consensus 305 ~l~f~sd~~-----g~~~iy~~dl~~g~~~~lt~~g~---------~~~~~~~SpDG~~Ia~~~~~~~~----------- 359 (433)
T PRK04922 305 SIYFTSDRG-----GRPQIYRVAASGGSAERLTFQGN---------YNARASVSPDGKKIAMVHGSGGQ----------- 359 (433)
T ss_pred EEEEEECCC-----CCceEEEEECCCCCeEEeecCCC---------CccCEEECCCCCEEEEEECCCCc-----------
Confidence 999998764 34689999999988888875332 23468999999999998765432
Q ss_pred CCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497 577 QPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 577 ~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
..|+++++.++++++|+... ...++.|||||++++...+.+
T Consensus 360 ---~~I~v~d~~~g~~~~Lt~~~-~~~~p~~spdG~~i~~~s~~~ 400 (433)
T PRK04922 360 ---YRIAVMDLSTGSVRTLTPGS-LDESPSFAPNGSMVLYATREG 400 (433)
T ss_pred ---eeEEEEECCCCCeEECCCCC-CCCCceECCCCCEEEEEEecC
Confidence 28999999999999998654 457899999999876554433
No 20
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=2.8e-21 Score=203.37 Aligned_cols=228 Identities=24% Similarity=0.375 Sum_probs=175.9
Q ss_pred CEEEEEecC----CCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCC
Q 039497 342 GLIVFNHDF----ELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD 416 (642)
Q Consensus 342 ~~l~~~~~~----~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 416 (642)
++|+|+... ....+|+++|.+++..++++. ...+..+.|||||++|+|++.. .....||.++. +
T Consensus 163 ~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~------~~~~~l~~~~l--~--- 231 (430)
T PRK00178 163 TRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFE------QKRPRIFVQNL--D--- 231 (430)
T ss_pred eeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcC------CCCCEEEEEEC--C---
Confidence 568886542 235679999999988777766 4567889999999999998853 23334555544 2
Q ss_pred CCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCC
Q 039497 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496 (642)
Q Consensus 417 ~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~ 496 (642)
++ ..+.++... +....+.|||||++|+|...+++..+||++|+++++ .++|+........+.|||||+
T Consensus 232 --~g-----~~~~l~~~~-g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~----~~~lt~~~~~~~~~~~spDg~ 299 (430)
T PRK00178 232 --TG-----RREQITNFE-GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ----LSRVTNHPAIDTEPFWGKDGR 299 (430)
T ss_pred --CC-----CEEEccCCC-CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC----eEEcccCCCCcCCeEECCCCC
Confidence 33 566676554 556679999999999999888888899999999887 488887766777899999999
Q ss_pred EEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCC
Q 039497 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQF 576 (642)
Q Consensus 497 ~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~ 576 (642)
.|+|.+... +..+||++++.+++.++++..+. ....+.|||||++|+|.....+.
T Consensus 300 ~i~f~s~~~-----g~~~iy~~d~~~g~~~~lt~~~~---------~~~~~~~Spdg~~i~~~~~~~~~----------- 354 (430)
T PRK00178 300 TLYFTSDRG-----GKPQIYKVNVNGGRAERVTFVGN---------YNARPRLSADGKTLVMVHRQDGN----------- 354 (430)
T ss_pred EEEEEECCC-----CCceEEEEECCCCCEEEeecCCC---------CccceEECCCCCEEEEEEccCCc-----------
Confidence 999998754 45689999999998888875331 23468999999999999865432
Q ss_pred CCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497 577 QPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 577 ~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
.+|+++|+.+++.++|+... ....+.|||||++++...+.+
T Consensus 355 ---~~l~~~dl~tg~~~~lt~~~-~~~~p~~spdg~~i~~~~~~~ 395 (430)
T PRK00178 355 ---FHVAAQDLQRGSVRILTDTS-LDESPSVAPNGTMLIYATRQQ 395 (430)
T ss_pred ---eEEEEEECCCCCEEEccCCC-CCCCceECCCCCEEEEEEecC
Confidence 27999999999999998753 446899999999886655443
No 21
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.90 E-value=4.2e-19 Score=179.73 Aligned_cols=469 Identities=15% Similarity=0.093 Sum_probs=261.2
Q ss_pred ecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCcccccccc-CCCEEEEEEeccCCCcccc
Q 039497 39 LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA-RNNKLFFISAHEQPDQIFK 117 (642)
Q Consensus 39 lt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~ 117 (642)
|.+..-...+..|+ |||..|.+-. | .+|.+.+........++-..+..+. ..++ +++.++.+.....
T Consensus 10 llGTvyr~Gnl~ft-~dG~sviSPv---G-Nrvsv~dLknN~S~Tl~~e~~~NI~-~ialSp~g~lllavdE~g------ 77 (893)
T KOG0291|consen 10 LLGTVYRAGNLVFT-KDGNSVISPV---G-NRVSVFDLKNNKSYTLPLETRYNIT-RIALSPDGTLLLAVDERG------ 77 (893)
T ss_pred cccceeecCcEEEC-CCCCEEEecc---C-CEEEEEEccCCcceeEEeecCCceE-EEEeCCCceEEEEEcCCC------
Confidence 34455556788899 9999998643 2 2344442222111111110111111 1222 4555555444321
Q ss_pred cccceEEEEccCCc-eEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee------
Q 039497 118 SWSALYSTDLKASK-FTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC------ 190 (642)
Q Consensus 118 ~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~------ 190 (642)
....+++.... ...... .....+..|||||+.+|..... .|-+|...+.....+..
T Consensus 78 ---~~~lvs~~~r~Vlh~f~f-k~~v~~i~fSPng~~fav~~gn-------------~lqiw~~P~~~~~~~~pFvl~r~ 140 (893)
T KOG0291|consen 78 ---RALLVSLLSRSVLHRFNF-KRGVGAIKFSPNGKFFAVGCGN-------------LLQIWHAPGEIKNEFNPFVLHRT 140 (893)
T ss_pred ---cEEEEecccceeeEEEee-cCccceEEECCCCcEEEEEecc-------------eeEEEecCcchhcccCcceEeee
Confidence 22233433322 222222 2234568999999999987533 34555544332211111
Q ss_pred cCC-----CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccC
Q 039497 191 ERG-----GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKN 265 (642)
Q Consensus 191 ~~~-----~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~ 265 (642)
..+ .++.||.|++++.+. ..|-...||-++...+. ....+..+...+....|+.|...|+.+..++
T Consensus 141 ~~g~fddi~si~Ws~DSr~l~~g-srD~s~rl~~v~~~k~~-------~~~~l~gHkd~VvacfF~~~~~~l~tvskdG- 211 (893)
T KOG0291|consen 141 YLGHFDDITSIDWSDDSRLLVTG-SRDLSARLFGVDGNKNL-------FTYALNGHKDYVVACFFGANSLDLYTVSKDG- 211 (893)
T ss_pred ecCCccceeEEEeccCCceEEec-cccceEEEEEecccccc-------ceEeccCCCcceEEEEeccCcceEEEEecCc-
Confidence 001 256999999988886 45666677777655442 4556666655565555666666666655444
Q ss_pred CceeeEEEEEeecC-----------------------CC-------------------CcccCCeecCCCCEEEEEEeec
Q 039497 266 RNFRHIEIYDLTLN-----------------------PN-------------------FHHYNPFVSANSEFIGYHRFRG 303 (642)
Q Consensus 266 ~~~~~i~~~d~~~~-----------------------~~-------------------~~~~~~~~spDg~~l~~~~~~~ 303 (642)
.+.+|..... .+ .......+.+.-..|+.. ...
T Consensus 212 ----~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvg-Fss 286 (893)
T KOG0291|consen 212 ----ALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVG-FSS 286 (893)
T ss_pred ----eEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEE-ecC
Confidence 3333333100 00 000111111111111111 111
Q ss_pred CCCCCCcccceEeeccCC--CceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCC--eeEEeecCCceeee
Q 039497 304 ESTEGQSTIPHLEPVASP--VKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK--RWTLIKDRTAFYNS 379 (642)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~ 379 (642)
+ ...+..+..- ...+.+.........|+..|++|+|.+.+ .++|.+|+-.... .++-.+-..+..++
T Consensus 287 G-------~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k--lgQLlVweWqsEsYVlKQQgH~~~i~~l~ 357 (893)
T KOG0291|consen 287 G-------EFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK--LGQLLVWEWQSESYVLKQQGHSDRITSLA 357 (893)
T ss_pred C-------eeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCc--cceEEEEEeeccceeeeccccccceeeEE
Confidence 0 0001111110 11111112223456888899999997744 4566666654432 22222245678899
Q ss_pred eecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCC--
Q 039497 380 WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRS-- 457 (642)
Q Consensus 380 ~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~-- 457 (642)
+||||+.|+... +++++++|+... +. ....++.+. ..+..+.|+..|+.|+-.+.+.
T Consensus 358 YSpDgq~iaTG~-------eDgKVKvWn~~S--------gf-----C~vTFteHt-s~Vt~v~f~~~g~~llssSLDGtV 416 (893)
T KOG0291|consen 358 YSPDGQLIATGA-------EDGKVKVWNTQS--------GF-----CFVTFTEHT-SGVTAVQFTARGNVLLSSSLDGTV 416 (893)
T ss_pred ECCCCcEEEecc-------CCCcEEEEeccC--------ce-----EEEEeccCC-CceEEEEEEecCCEEEEeecCCeE
Confidence 999999998876 488999999865 33 555566655 5566666766666555433211
Q ss_pred ---------------------------------------CceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEE
Q 039497 458 ---------------------------------------GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498 (642)
Q Consensus 458 ---------------------------------------g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l 498 (642)
...+|++|+++||+. +..|..+.+.+..+.|+|+|..|
T Consensus 417 RAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql---lDiLsGHEgPVs~l~f~~~~~~L 493 (893)
T KOG0291|consen 417 RAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL---LDILSGHEGPVSGLSFSPDGSLL 493 (893)
T ss_pred EeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee---eehhcCCCCcceeeEEccccCeE
Confidence 245899999999998 77888888999999999999988
Q ss_pred EEEecCCCCCCCCceeEEEEeCCCC--ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCC
Q 039497 499 AFSSNRHNPDNVEAFSLYVIKPDGS--GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQF 576 (642)
Q Consensus 499 ~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~ 576 (642)
+-.+-+.+ |.+||+-.. ..+.+... . .+..++|+|||+.|++..-++
T Consensus 494 aS~SWDkT--------VRiW~if~s~~~vEtl~i~---s-------dvl~vsfrPdG~elaVaTldg------------- 542 (893)
T KOG0291|consen 494 ASGSWDKT--------VRIWDIFSSSGTVETLEIR---S-------DVLAVSFRPDGKELAVATLDG------------- 542 (893)
T ss_pred Eeccccce--------EEEEEeeccCceeeeEeec---c-------ceeEEEEcCCCCeEEEEEecc-------------
Confidence 87775554 777777443 44444331 1 457899999999999988775
Q ss_pred CCCCcEEEEEcCCCce-----------------eeccCC----CCCCCCcEEecCCceEEeec
Q 039497 577 QPYGDLYVVKLDGSGL-----------------RRLTWN----GYENGTPAWHPGNQLDLGKL 618 (642)
Q Consensus 577 ~~~~~l~~~~~~~~~~-----------------~~lt~~----~~~~~~~~~s~dg~~~~~~~ 618 (642)
+|-.||...+.. -++|.. +-....+.||+||.++++..
T Consensus 543 ----qItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG 601 (893)
T KOG0291|consen 543 ----QITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGG 601 (893)
T ss_pred ----eEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecC
Confidence 566666543211 122221 11236789999999998853
No 22
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=4.6e-21 Score=200.47 Aligned_cols=254 Identities=19% Similarity=0.287 Sum_probs=179.9
Q ss_pred cceEEEEeecC-CceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCccc
Q 039497 4 KGTIVFTTVGR-PYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTE 82 (642)
Q Consensus 4 ~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~ 82 (642)
+++|+|+.... ......||+++..| ...++||.+......|+|| |||++|||++..++..+
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg-----~~~~~lt~~~~~v~~p~wS-PDG~~la~~s~~~~~~~------------ 229 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDG-----FNQFIVNRSSQPLMSPAWS-PDGSKLAYVSFENKKSQ------------ 229 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCC-----CCceEeccCCCccccceEc-CCCCEEEEEEecCCCcE------------
Confidence 57899986532 22357999999998 7888999999899999999 99999999875443333
Q ss_pred ccCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCC
Q 039497 83 LLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESR 162 (642)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~ 162 (642)
||++++.+++.++++........|+|||||++||+.....
T Consensus 230 ---------------------------------------i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~- 269 (429)
T PRK01742 230 ---------------------------------------LVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKD- 269 (429)
T ss_pred ---------------------------------------EEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecC-
Confidence 4444555555555554444455699999999999986543
Q ss_pred CCCCCCCCCeeeEEEEEecCCCceeEeecCC--CcceEeeCCe-EEEEEecCCCceEEEEEecCCCcccccCCccceeeC
Q 039497 163 PWPGEFHELNTDIVVFQESDPNKRVIVCERG--GWPTWSGDST-IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVT 239 (642)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~wspdg~-~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~ 239 (642)
+..+||++++.+++.++++.... ..+.|+|||+ ++|++ ..+|..+||.++..++ ....+.
T Consensus 270 --------g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s-~~~g~~~I~~~~~~~~--------~~~~l~ 332 (429)
T PRK01742 270 --------GVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTS-DRSGSPQVYRMSASGG--------GASLVG 332 (429)
T ss_pred --------CcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEE-CCCCCceEEEEECCCC--------CeEEec
Confidence 35689999999999888887543 3689999996 56665 5667889999998876 445553
Q ss_pred CCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeecc
Q 039497 240 PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVA 319 (642)
Q Consensus 240 ~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~ 319 (642)
... ..++|||||++|++... ..+.++|+..+ +.. .+.
T Consensus 333 ~~~---~~~~~SpDG~~ia~~~~------~~i~~~Dl~~g--------------~~~--------------------~lt 369 (429)
T PRK01742 333 GRG---YSAQISADGKTLVMING------DNVVKQDLTSG--------------STE--------------------VLS 369 (429)
T ss_pred CCC---CCccCCCCCCEEEEEcC------CCEEEEECCCC--------------CeE--------------------Eec
Confidence 222 45789999999988643 13555555211 000 000
Q ss_pred CCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecC
Q 039497 320 SPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPT 383 (642)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spd 383 (642)
.......+.|+|||+.|+|.....+...+++++.++...+++.. .+.+..++|||-
T Consensus 370 --------~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 370 --------STFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred --------CCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 00112357899999999998765555567778888887777764 556788999984
No 23
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6.5e-21 Score=178.24 Aligned_cols=329 Identities=16% Similarity=0.170 Sum_probs=209.8
Q ss_pred eEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCCc---ceE
Q 039497 122 LYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGW---PTW 198 (642)
Q Consensus 122 l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~---~~w 198 (642)
++++.+.+.....+..+.....+.+|||||++||..+.+. .+.+||+.+..+......+..| ++|
T Consensus 98 vfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~------------TvR~WD~~TeTp~~t~KgH~~WVlcvaw 165 (480)
T KOG0271|consen 98 VFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDT------------TVRLWDLDTETPLFTCKGHKNWVLCVAW 165 (480)
T ss_pred hhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCc------------eEEeeccCCCCcceeecCCccEEEEEEE
Confidence 4555555555555566666678899999999999877554 7889999887766666666655 499
Q ss_pred eeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCcccccee-----ecCCcEEEEEEeccCCceeeEEE
Q 039497 199 SGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAA-----FHDGKRLAVATRRKNRNFRHIEI 273 (642)
Q Consensus 199 spdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----SpdG~~l~~~~~~~~~~~~~i~~ 273 (642)
||||+.+++. ..+| .|..+++++|++ ....+..+.-.+..++| .|..++|+..+.+ ..+++
T Consensus 166 sPDgk~iASG-~~dg--~I~lwdpktg~~------~g~~l~gH~K~It~Lawep~hl~p~~r~las~skD-----g~vrI 231 (480)
T KOG0271|consen 166 SPDGKKIASG-SKDG--SIRLWDPKTGQQ------IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKD-----GSVRI 231 (480)
T ss_pred CCCcchhhcc-ccCC--eEEEecCCCCCc------ccccccCcccceeEEeecccccCCCccceecccCC-----CCEEE
Confidence 9999999888 6678 566667777753 44566777666666666 5677877774443 38889
Q ss_pred EEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCc
Q 039497 274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN 353 (642)
Q Consensus 274 ~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 353 (642)
||+..+. .++ .+.+-... .....|--+| ++|.+..+
T Consensus 232 Wd~~~~~---------------~~~------------------~lsgHT~~-------VTCvrwGG~g--liySgS~D-- 267 (480)
T KOG0271|consen 232 WDTKLGT---------------CVR------------------TLSGHTAS-------VTCVRWGGEG--LIYSGSQD-- 267 (480)
T ss_pred EEccCce---------------EEE------------------EeccCccc-------eEEEEEcCCc--eEEecCCC--
Confidence 9883211 000 00000000 0122333222 44433222
Q ss_pred eeEEEEECCCCCeeEEee--cCCce-----------eeeeecCC-------------------------CEEEEEEcCCC
Q 039497 354 AGIKIAKSDGSKRWTLIK--DRTAF-----------YNSWSPTE-------------------------KHVIYTSTGPI 395 (642)
Q Consensus 354 ~~l~~~d~~~~~~~~l~~--~~~~~-----------~~~~spdg-------------------------~~l~~~~~~~~ 395 (642)
..|.+++...+..-.... ...+. .-+|.|.| ++|+-.+
T Consensus 268 rtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs---- 343 (480)
T KOG0271|consen 268 RTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS---- 343 (480)
T ss_pred ceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec----
Confidence 233333333322111110 11111 11222333 3355554
Q ss_pred cccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccc
Q 039497 396 FQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGD 475 (642)
Q Consensus 396 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~ 475 (642)
++..+.+|.-.. . .. .+.+++.+. ..+.++.||||+++|+-++.+ ..|.+|+..+|+.
T Consensus 344 ---Dd~tlflW~p~~--~-----kk-----pi~rmtgHq-~lVn~V~fSPd~r~IASaSFD---kSVkLW~g~tGk~--- 401 (480)
T KOG0271|consen 344 ---DDFTLFLWNPFK--S-----KK-----PITRMTGHQ-ALVNHVSFSPDGRYIASASFD---KSVKLWDGRTGKF--- 401 (480)
T ss_pred ---CCceEEEecccc--c-----cc-----chhhhhchh-hheeeEEECCCccEEEEeecc---cceeeeeCCCcch---
Confidence 367788887543 1 11 556777776 788899999999999998854 4799999999987
Q ss_pred eeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCE
Q 039497 476 IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW 555 (642)
Q Consensus 476 ~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~ 555 (642)
+..+-.+-..+..++||.|.+.|+-.+.+.+ |.+|++.++++..-.+ ++.. .+..+-|||||++
T Consensus 402 lasfRGHv~~VYqvawsaDsRLlVS~SkDsT--------LKvw~V~tkKl~~DLp-Gh~D-------EVf~vDwspDG~r 465 (480)
T KOG0271|consen 402 LASFRGHVAAVYQVAWSADSRLLVSGSKDST--------LKVWDVRTKKLKQDLP-GHAD-------EVFAVDWSPDGQR 465 (480)
T ss_pred hhhhhhccceeEEEEeccCccEEEEcCCCce--------EEEEEeeeeeecccCC-CCCc-------eEEEEEecCCCce
Confidence 6777767778889999999987777666654 9999998887765443 4444 6788999999998
Q ss_pred EEEEEec
Q 039497 556 LLFTANL 562 (642)
Q Consensus 556 l~~~~~~ 562 (642)
++-...+
T Consensus 466 V~sggkd 472 (480)
T KOG0271|consen 466 VASGGKD 472 (480)
T ss_pred eecCCCc
Confidence 8765543
No 24
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.88 E-value=5.5e-20 Score=193.43 Aligned_cols=224 Identities=28% Similarity=0.425 Sum_probs=173.7
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
..+.|||||++|+|.....+...|+++++.+++...+.. .+....+.|+|||+.|+|.... .+...||.++.
T Consensus 193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~------~~~~~i~~~d~- 265 (417)
T TIGR02800 193 LSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSK------DGNPDIYVMDL- 265 (417)
T ss_pred ecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECC------CCCccEEEEEC-
Confidence 467899999999998876666899999999887666655 4456679999999999988642 33445555555
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeE
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~ 491 (642)
+ ++ ..+.++... .....+.|+|||++|+|.+.+.+..+||++++.+++. +.++........+.|
T Consensus 266 -~-----~~-----~~~~l~~~~-~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~----~~l~~~~~~~~~~~~ 329 (417)
T TIGR02800 266 -D-----GK-----QLTRLTNGP-GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV----RRLTFRGGYNASPSW 329 (417)
T ss_pred -C-----CC-----CEEECCCCC-CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEeecCCCCccCeEE
Confidence 2 23 556666554 4556789999999999999888888999999998774 777755556678899
Q ss_pred ecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCC
Q 039497 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS 571 (642)
Q Consensus 492 spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~ 571 (642)
||||++|++..... +..+|+++|++++..+.++... ....+.|+|||+.|++.+.+++..
T Consensus 330 spdg~~i~~~~~~~-----~~~~i~~~d~~~~~~~~l~~~~----------~~~~p~~spdg~~l~~~~~~~~~~----- 389 (417)
T TIGR02800 330 SPDGDLIAFVHREG-----GGFNIAVMDLDGGGERVLTDTG----------LDESPSFAPNGRMILYATTRGGRG----- 389 (417)
T ss_pred CCCCCEEEEEEccC-----CceEEEEEeCCCCCeEEccCCC----------CCCCceECCCCCEEEEEEeCCCcE-----
Confidence 99999999998764 4567999999988777665422 124679999999999999877642
Q ss_pred CCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEe
Q 039497 572 WPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWH 608 (642)
Q Consensus 572 ~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s 608 (642)
.|++++.+++..+.++...+....|.||
T Consensus 390 ---------~l~~~~~~g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 390 ---------VLGLVSTDGRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred ---------EEEEEECCCceeeECCCCCCCcCCCCCC
Confidence 7888888888888888766677788875
No 25
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.87 E-value=1.5e-18 Score=169.07 Aligned_cols=392 Identities=18% Similarity=0.191 Sum_probs=230.9
Q ss_pred eCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---cceEeeCCeEEEEEecCCCceEEEEEecC
Q 039497 147 VSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---WPTWSGDSTIYFHRQADDGWWSIFRVSFP 223 (642)
Q Consensus 147 ~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~~~wspdg~~~~~~~~~~g~~~l~~~~~~ 223 (642)
-.|-|..|+|.. +..+++.+++.+....+..++.. .+.+||.|..+++. +..|...||-..-+
T Consensus 26 ~dpkgd~ilY~n-------------Gksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASG-D~sG~vRIWdtt~~ 91 (603)
T KOG0318|consen 26 GDPKGDNILYTN-------------GKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASG-DVSGKVRIWDTTQK 91 (603)
T ss_pred cCCCCCeEEEeC-------------CCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeec-CCcCcEEEEeccCc
Confidence 367799999974 45699999999988777766653 45899999855555 66786666644322
Q ss_pred CCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEee------cCCCCcccCCeecCCCC-EE
Q 039497 224 ENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT------LNPNFHHYNPFVSANSE-FI 296 (642)
Q Consensus 224 ~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~------~~~~~~~~~~~~spDg~-~l 296 (642)
+-. ....+......+..++|++|+++|+.+..-++. ...+.+||-- .++...+....+-|.-- ++
T Consensus 92 ~hi-------LKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer-fg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi 163 (603)
T KOG0318|consen 92 EHI-------LKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER-FGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRI 163 (603)
T ss_pred cee-------eeeeeeecccccccceeCCCCcEEEEEecCccc-eeEEEEecCCCccceeeccceeEeeeeccCCCceEE
Confidence 210 122333344567889999999999998765443 6677888871 12211122222222111 11
Q ss_pred EEEEeecCCCCCCcccceEeeccCCCceeEE-----eeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee
Q 039497 297 GYHRFRGESTEGQSTIPHLEPVASPVKELRM-----LRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK 371 (642)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~ 371 (642)
+....++. . .-..+++=+... ..+ ....+|||||++++.++. ...++++|-.+++..-...
T Consensus 164 ~T~sdDn~-------v---~ffeGPPFKFk~s~r~HskF-V~~VRysPDG~~Fat~gs---Dgki~iyDGktge~vg~l~ 229 (603)
T KOG0318|consen 164 ATGSDDNT-------V---AFFEGPPFKFKSSFREHSKF-VNCVRYSPDGSRFATAGS---DGKIYIYDGKTGEKVGELE 229 (603)
T ss_pred EeccCCCe-------E---EEeeCCCeeeeecccccccc-eeeEEECCCCCeEEEecC---CccEEEEcCCCccEEEEec
Confidence 11111111 0 001111100000 000 135689999999888754 4789999988887655443
Q ss_pred -----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCc----c---------------cc--
Q 039497 372 -----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREE----I---------------PC-- 425 (642)
Q Consensus 372 -----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~---------------~~-- 425 (642)
.+.+..+.||||+++++.++. +...+||++...+--..-+-+.+ + .+
T Consensus 230 ~~~aHkGsIfalsWsPDs~~~~T~Sa-------Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~i 302 (603)
T KOG0318|consen 230 DSDAHKGSIFALSWSPDSTQFLTVSA-------DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTI 302 (603)
T ss_pred CCCCccccEEEEEECCCCceEEEecC-------CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEE
Confidence 678999999999999999874 67788888865200000000000 0 00
Q ss_pred ---------ceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcc------------------------
Q 039497 426 ---------DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF------------------------ 472 (642)
Q Consensus 426 ---------~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~------------------------ 472 (642)
....+..+. ..+..++.+|||++|+-.+.+ | .|-.|+..+|..
T Consensus 303 n~ln~~d~~~~~~i~GHn-K~ITaLtv~~d~~~i~SgsyD-G--~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~ 378 (603)
T KOG0318|consen 303 NYLNPSDPSVLKVISGHN-KSITALTVSPDGKTIYSGSYD-G--HINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELF 378 (603)
T ss_pred EEecccCCChhheecccc-cceeEEEEcCCCCEEEeeccC-c--eEEEEecCCccccccccccccceEEEEeecCCCcEE
Confidence 111222222 456678999999888765432 1 222222222111
Q ss_pred -----------------------------c-----------------cceeeCCC--------CCCcccceeEecCCCEE
Q 039497 473 -----------------------------N-----------------GDIRQLTD--------GPWIDTMPSWSPKGDLI 498 (642)
Q Consensus 473 -----------------------------~-----------------~~~~~l~~--------~~~~~~~~~~spdG~~l 498 (642)
| +.+..|.. ........+.+||++.+
T Consensus 379 t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~v 458 (603)
T KOG0318|consen 379 TIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEV 458 (603)
T ss_pred EEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEE
Confidence 0 00000000 01122345788888888
Q ss_pred EEEecCCCCCCCCceeEEEEeCCCCceEE-eeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCC
Q 039497 499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRR-IHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQ 577 (642)
Q Consensus 499 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~ 577 (642)
+....+.. |++|.+.+++... .....+.+ .+..+++||||++|+.....
T Consensus 459 aVGG~Dgk--------vhvysl~g~~l~ee~~~~~h~a-------~iT~vaySpd~~yla~~Da~--------------- 508 (603)
T KOG0318|consen 459 AVGGQDGK--------VHVYSLSGDELKEEAKLLEHRA-------AITDVAYSPDGAYLAAGDAS--------------- 508 (603)
T ss_pred EEecccce--------EEEEEecCCcccceeeeecccC-------CceEEEECCCCcEEEEeccC---------------
Confidence 88777654 8888887765322 12223344 67899999999998877543
Q ss_pred CCCcEEEEEcCCCc--eeeccCCCCCCCCcEEecCCceEEee
Q 039497 578 PYGDLYVVKLDGSG--LRRLTWNGYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 578 ~~~~l~~~~~~~~~--~~~lt~~~~~~~~~~~s~dg~~~~~~ 617 (642)
..+.+|++...+ ..+.+.+...+..++|||+++++++.
T Consensus 509 --rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATG 548 (603)
T KOG0318|consen 509 --RKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATG 548 (603)
T ss_pred --CcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEec
Confidence 278888887765 44566677778899999999988764
No 26
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.85 E-value=1e-18 Score=177.90 Aligned_cols=330 Identities=20% Similarity=0.316 Sum_probs=206.6
Q ss_pred CCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeec--CCCcceEeeCC-eEEEEEecCCCceEEEEEecCC
Q 039497 148 SYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCE--RGGWPTWSGDS-TIYFHRQADDGWWSIFRVSFPE 224 (642)
Q Consensus 148 SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--~~~~~~wspdg-~~~~~~~~~~g~~~l~~~~~~~ 224 (642)
||||+++++.....+.|+.. ....+|++++++++.+++... ....+.||||| .++|+. ++ +||..+..+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s---~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~---~~--nly~~~~~~ 72 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHS---FKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR---DN--NLYLRDLAT 72 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSE---EEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE---TT--EEEEESSTT
T ss_pred CCCCCeEEEEECcEEeeeec---cceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe---cC--ceEEEECCC
Confidence 89999999988766666554 456899999999998888875 23578999999 566776 33 899999888
Q ss_pred CcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecC
Q 039497 225 NLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGE 304 (642)
Q Consensus 225 ~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~ 304 (642)
+ ...+|+..+... .+ +|. .=|++..+. -.....+.|||||++|+|.+.+..
T Consensus 73 ~--------~~~~lT~dg~~~---i~--nG~--------------~dwvyeEEv--~~~~~~~~WSpd~~~la~~~~d~~ 123 (353)
T PF00930_consen 73 G--------QETQLTTDGEPG---IY--NGV--------------PDWVYEEEV--FDRRSAVWWSPDSKYLAFLRFDER 123 (353)
T ss_dssp S--------EEEESES--TTT---EE--ESB----------------HHHHHHT--SSSSBSEEE-TTSSEEEEEEEE-T
T ss_pred C--------CeEEecccccee---EE--cCc--------------cceeccccc--cccccceEECCCCCEEEEEEECCc
Confidence 7 667777765111 00 110 001111110 011234579999999999987766
Q ss_pred CCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEe--cCCCceeEEEEECCCCCeeEEee-------cCCc
Q 039497 305 STEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH--DFELNAGIKIAKSDGSKRWTLIK-------DRTA 375 (642)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~--~~~~~~~l~~~d~~~~~~~~l~~-------~~~~ 375 (642)
.. ....+........ ..|.. ..+-|-. ..+....|+++++++++...+.. ...+
T Consensus 124 ~v----~~~~~~~~~~~~~---------~yp~~----~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl 186 (353)
T PF00930_consen 124 EV----PEYPLPDYSPPDS---------QYPEV----ESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYL 186 (353)
T ss_dssp TS-----EEEEEEESSSTE---------SS-EE----EEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEE
T ss_pred CC----ceEEeeccCCccc---------cCCcc----cccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCc
Confidence 31 1111111111100 01111 1122211 11345789999999988655443 3456
Q ss_pred eeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc-ccCCCC---ccCcEEC-CCCCeE
Q 039497 376 FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT-KEETGN---NAFPSCS-PDGKFL 450 (642)
Q Consensus 376 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~---~~~~~~S-pDg~~l 450 (642)
..+.|++|++.|++.... .......++.++. . .+ ..+.+. ...... ...+.|. +++..+
T Consensus 187 ~~v~W~~d~~~l~~~~~n----R~q~~~~l~~~d~--~-----tg-----~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~ 250 (353)
T PF00930_consen 187 TRVGWSPDGKRLWVQWLN----RDQNRLDLVLCDA--S-----TG-----ETRVVLEETSDGWVDVYDPPHFLGPDGNEF 250 (353)
T ss_dssp EEEEEEETTEEEEEEEEE----TTSTEEEEEEEEE--C-----TT-----TCEEEEEEESSSSSSSSSEEEE-TTTSSEE
T ss_pred ccceecCCCcEEEEEEcc----cCCCEEEEEEEEC--C-----CC-----ceeEEEEecCCcceeeecccccccCCCCEE
Confidence 788999999966665532 2355666666655 2 22 222221 111122 2234555 899999
Q ss_pred EEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccc-eeEecCCCEEEEEecCCCCCCCCceeEEEEeCC-CCceEEe
Q 039497 451 VFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTM-PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD-GSGLRRI 528 (642)
Q Consensus 451 ~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~-~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l 528 (642)
++.+.++|..+||+++.+++. .++|+.+.+.+.. ..|+++++.|+|.+.... +...+||+++++ +++.++|
T Consensus 251 l~~s~~~G~~hly~~~~~~~~----~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~---p~~r~lY~v~~~~~~~~~~L 323 (353)
T PF00930_consen 251 LWISERDGYRHLYLYDLDGGK----PRQLTSGDWEVTSILGWDEDNNRIYFTANGDN---PGERHLYRVSLDSGGEPKCL 323 (353)
T ss_dssp EEEEETTSSEEEEEEETTSSE----EEESS-SSS-EEEEEEEECTSSEEEEEESSGG---TTSBEEEEEETTETTEEEES
T ss_pred EEEEEcCCCcEEEEEcccccc----eeccccCceeecccceEcCCCCEEEEEecCCC---CCceEEEEEEeCCCCCeEec
Confidence 999999999999999999877 4899999888855 589999999999998754 378999999999 9999999
Q ss_pred eecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 529 HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
+..... ...+.|||||++++.+....
T Consensus 324 T~~~~~---------~~~~~~Spdg~y~v~~~s~~ 349 (353)
T PF00930_consen 324 TCEDGD---------HYSASFSPDGKYYVDTYSGP 349 (353)
T ss_dssp STTSST---------TEEEEE-TTSSEEEEEEESS
T ss_pred cCCCCC---------ceEEEECCCCCEEEEEEcCC
Confidence 864321 14799999999999887654
No 27
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=6.3e-20 Score=171.67 Aligned_cols=321 Identities=17% Similarity=0.149 Sum_probs=213.0
Q ss_pred EEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeec--------CCCCcccCC
Q 039497 216 SIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL--------NPNFHHYNP 287 (642)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~--------~~~~~~~~~ 287 (642)
.+|++...+. ....+.+++..+...+|||+|++|+. |+...++++||+.+ ++...+...
T Consensus 97 avfrvrpvtr--------CssS~~GH~e~Vl~~~fsp~g~~l~t-----GsGD~TvR~WD~~TeTp~~t~KgH~~WVlcv 163 (480)
T KOG0271|consen 97 AVFRVRPVTR--------CSSSIAGHGEAVLSVQFSPTGSRLVT-----GSGDTTVRLWDLDTETPLFTCKGHKNWVLCV 163 (480)
T ss_pred hhhcccccce--------eccccCCCCCcEEEEEecCCCceEEe-----cCCCceEEeeccCCCCcceeecCCccEEEEE
Confidence 4555555444 44567777778889999999999998 66677999999932 445556788
Q ss_pred eecCCCCEEEEEEeecCCCCCCcccceEeeccCCC-ceeEEeeeCCCcc-----EEcCCCCEEEEEecCCCceeEEEEEC
Q 039497 288 FVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPV-KELRMLRLNGSFP-----SFSPDGGLIVFNHDFELNAGIKIAKS 361 (642)
Q Consensus 288 ~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~spdg~~l~~~~~~~~~~~l~~~d~ 361 (642)
+|||||++|+.-..++. ..+|-....... ..+.-..-....+ ...|..++++-.+ ..+.+.++|+
T Consensus 164 awsPDgk~iASG~~dg~------I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~s---kDg~vrIWd~ 234 (480)
T KOG0271|consen 164 AWSPDGKKIASGSKDGS------IRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSS---KDGSVRIWDT 234 (480)
T ss_pred EECCCcchhhccccCCe------EEEecCCCCCcccccccCcccceeEEeecccccCCCccceeccc---CCCCEEEEEc
Confidence 99999999998776665 233321111110 1110000111222 3467777766643 3567888888
Q ss_pred CCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCcc
Q 039497 362 DGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNA 439 (642)
Q Consensus 362 ~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 439 (642)
..+....... ...+..+.|--+| ++|.. ..+.++++|+... |. ..+.|..+. ..+.
T Consensus 235 ~~~~~~~~lsgHT~~VTCvrwGG~g--liySg------S~DrtIkvw~a~d--------G~-----~~r~lkGHa-hwvN 292 (480)
T KOG0271|consen 235 KLGTCVRTLSGHTASVTCVRWGGEG--LIYSG------SQDRTIKVWRALD--------GK-----LCRELKGHA-HWVN 292 (480)
T ss_pred cCceEEEEeccCccceEEEEEcCCc--eEEec------CCCceEEEEEccc--------hh-----HHHhhcccc-hhee
Confidence 8877555544 4557788886444 66665 3478999998754 22 334444433 3333
Q ss_pred CcEEC-----------CCCCe-------------------------EEEEeCCCCceeEEEEECCCCccccceeeCCCCC
Q 039497 440 FPSCS-----------PDGKF-------------------------LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP 483 (642)
Q Consensus 440 ~~~~S-----------pDg~~-------------------------l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~ 483 (642)
+++.| |-|++ ++-.+ .+..+|+|+....+ +++...+.+.
T Consensus 293 ~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs---Dd~tlflW~p~~~k--kpi~rmtgHq 367 (480)
T KOG0271|consen 293 HLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS---DDFTLFLWNPFKSK--KPITRMTGHQ 367 (480)
T ss_pred eeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec---CCceEEEecccccc--cchhhhhchh
Confidence 33333 33433 55554 33589999976433 1256777787
Q ss_pred CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 484 WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 484 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
..++++.|||||++|+-++-+.. |.+|+..+|+.-.... ++-+ .++.++||.|.+.|+-.+.+.
T Consensus 368 ~lVn~V~fSPd~r~IASaSFDkS--------VkLW~g~tGk~lasfR-GHv~-------~VYqvawsaDsRLlVS~SkDs 431 (480)
T KOG0271|consen 368 ALVNHVSFSPDGRYIASASFDKS--------VKLWDGRTGKFLASFR-GHVA-------AVYQVAWSADSRLLVSGSKDS 431 (480)
T ss_pred hheeeEEECCCccEEEEeecccc--------eeeeeCCCcchhhhhh-hccc-------eeEEEEeccCccEEEEcCCCc
Confidence 88899999999999999988765 8999998887643222 4444 678999999999887777664
Q ss_pred CcccCCCCCCCCCCCCCcEEEEEcCCCce-eeccCCCCCCCCcEEecCCceEEeec
Q 039497 564 AVMAEPVSWPNQFQPYGDLYVVKLDGSGL-RRLTWNGYENGTPAWHPGNQLDLGKL 618 (642)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~lt~~~~~~~~~~~s~dg~~~~~~~ 618 (642)
-|-+|++.++++ .-|..+...++.+.|||||+.+++..
T Consensus 432 -----------------TLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sgg 470 (480)
T KOG0271|consen 432 -----------------TLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGG 470 (480)
T ss_pred -----------------eEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCC
Confidence 566667776664 45666778889999999999988753
No 28
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.84 E-value=7.3e-19 Score=184.92 Aligned_cols=229 Identities=28% Similarity=0.478 Sum_probs=173.2
Q ss_pred CCEEEEEecC--CCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCC
Q 039497 341 GGLIVFNHDF--ELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDD 417 (642)
Q Consensus 341 g~~l~~~~~~--~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 417 (642)
+.+++|.... .+...|+++|.++...+++.. ...+..+.|||||++|+|+... .+...++++++..
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~----~~~~~i~v~d~~~------- 223 (417)
T TIGR02800 155 STRIAYVSKSGKSRRYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFE----SGKPEIYVQDLAT------- 223 (417)
T ss_pred CCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcC----CCCcEEEEEECCC-------
Confidence 5678887653 356789999999888788776 4457889999999999998753 2233455555433
Q ss_pred CCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCE
Q 039497 418 NNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497 (642)
Q Consensus 418 ~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~ 497 (642)
+ ....+.... +....+.|||||+.|+|....++..+||++++.+++. ++++........+.|+|||++
T Consensus 224 --g-----~~~~~~~~~-~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~s~dg~~ 291 (417)
T TIGR02800 224 --G-----QREKVASFP-GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL----TRLTNGPGIDTEPSWSPDGKS 291 (417)
T ss_pred --C-----CEEEeecCC-CCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE----EECCCCCCCCCCEEECCCCCE
Confidence 3 345555444 4556789999999999988777778999999998874 788776656668899999999
Q ss_pred EEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCC
Q 039497 498 IAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQ 577 (642)
Q Consensus 498 l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~ 577 (642)
|+|.+.+. +..+||++++++++.++++.... ....+.|||||++|+++....+.
T Consensus 292 l~~~s~~~-----g~~~iy~~d~~~~~~~~l~~~~~---------~~~~~~~spdg~~i~~~~~~~~~------------ 345 (417)
T TIGR02800 292 IAFTSDRG-----GSPQIYMMDADGGEVRRLTFRGG---------YNASPSWSPDGDLIAFVHREGGG------------ 345 (417)
T ss_pred EEEEECCC-----CCceEEEEECCCCCEEEeecCCC---------CccCeEECCCCCEEEEEEccCCc------------
Confidence 99988765 34589999999988877764322 34678999999999999876532
Q ss_pred CCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497 578 PYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 578 ~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
.+|+.++++++..+.++... ....+.|+|||++++...+.+
T Consensus 346 --~~i~~~d~~~~~~~~l~~~~-~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 346 --FNIAVMDLDGGGERVLTDTG-LDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred --eEEEEEeCCCCCeEEccCCC-CCCCceECCCCCEEEEEEeCC
Confidence 38999999998888777543 446889999998876655544
No 29
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.84 E-value=4e-19 Score=181.15 Aligned_cols=225 Identities=25% Similarity=0.392 Sum_probs=179.6
Q ss_pred CccEEcCCCCEEEEEecCCCc-eeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 333 SFPSFSPDGGLIVFNHDFELN-AGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~-~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
..|.|+|+++.++|.....+. ..++++++++++...+.. .+....+.|||||++|+|+..+ ++...||.+++
T Consensus 196 ~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~r------dg~~~iy~~dl 269 (425)
T COG0823 196 LTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSR------DGSPDIYLMDL 269 (425)
T ss_pred eccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECC------CCCccEEEEcC
Confidence 568999999999998765555 799999999998777766 7778899999999999999964 67777888877
Q ss_pred ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccccee
Q 039497 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS 490 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~ 490 (642)
. ++ ...+|+... +....+.|||||++|+|.+++.|..+||+++.++++ .++++........|.
T Consensus 270 --~-----~~-----~~~~Lt~~~-gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~----~~riT~~~~~~~~p~ 332 (425)
T COG0823 270 --D-----GK-----NLPRLTNGF-GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ----VTRLTFSGGGNSNPV 332 (425)
T ss_pred --C-----CC-----cceecccCC-ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc----eeEeeccCCCCcCcc
Confidence 3 23 455577777 777799999999999999999999999999999777 488887766666899
Q ss_pred EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc-eEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCC
Q 039497 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG-LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEP 569 (642)
Q Consensus 491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~ 569 (642)
|||||++|+|.+... +...|.+.|+.++. .+.++.... ...+.|+++|+.|+|.+...+.
T Consensus 333 ~SpdG~~i~~~~~~~-----g~~~i~~~~~~~~~~~~~lt~~~~----------~e~ps~~~ng~~i~~~s~~~~~---- 393 (425)
T COG0823 333 WSPDGDKIVFESSSG-----GQWDIDKNDLASGGKIRILTSTYL----------NESPSWAPNGRMIMFSSGQGGG---- 393 (425)
T ss_pred CCCCCCEEEEEeccC-----CceeeEEeccCCCCcEEEcccccc----------CCCCCcCCCCceEEEeccCCCC----
Confidence 999999999999543 34779999997766 555554322 2478999999999999877643
Q ss_pred CCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEec
Q 039497 570 VSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609 (642)
Q Consensus 570 ~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~ 609 (642)
..|+.+..++.....+....+....++|+|
T Consensus 394 ----------~~l~~~s~~g~~~~~~~~~~~~~~~p~w~~ 423 (425)
T COG0823 394 ----------SVLSLVSLDGRVSRPLPLADGDVRVPAWSP 423 (425)
T ss_pred ----------ceEEEeeccceeEEEEeccCcceecccccC
Confidence 388888888766665555556677888875
No 30
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.81 E-value=2.3e-18 Score=175.58 Aligned_cols=219 Identities=27% Similarity=0.478 Sum_probs=170.0
Q ss_pred CCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCC-CeEEEEEEEeecCCCCCCCCCccccceE
Q 039497 351 ELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSER-ATVQIARVSFQLDPSDDNNREEIPCDVK 428 (642)
Q Consensus 351 ~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 428 (642)
....++++.|-++...+.++. ...+..+.|+|+++.++|.... ... ..+.+++++. + ...
T Consensus 170 ~~~~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~----~~~~~~i~~~~l~~---------g-----~~~ 231 (425)
T COG0823 170 PLPYELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFE----LGGCPRIYYLDLNT---------G-----KRP 231 (425)
T ss_pred CCCceEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEe----cCCCceEEEEeccC---------C-----ccc
Confidence 345789999988766666666 5567789999999999999753 222 3455555544 2 333
Q ss_pred EccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCC
Q 039497 429 ILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD 508 (642)
Q Consensus 429 ~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~ 508 (642)
.+.... +....++|||||++|+|...+++..+||++|+.+++. ..|+...+....|.|||||++|+|.+++.
T Consensus 232 ~i~~~~-g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~----~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~--- 303 (425)
T COG0823 232 VILNFN-GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL----PRLTNGFGINTSPSWSPDGSKIVFTSDRG--- 303 (425)
T ss_pred eeeccC-CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc----eecccCCccccCccCCCCCCEEEEEeCCC---
Confidence 344344 6778899999999999999999999999999998874 77999888888999999999999999887
Q ss_pred CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcC
Q 039497 509 NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLD 588 (642)
Q Consensus 509 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 588 (642)
+..+||+++++++..++++..... ...+.|||||++|+|....++. ..|...++.
T Consensus 304 --G~p~I~~~~~~g~~~~riT~~~~~---------~~~p~~SpdG~~i~~~~~~~g~--------------~~i~~~~~~ 358 (425)
T COG0823 304 --GRPQIYLYDLEGSQVTRLTFSGGG---------NSNPVWSPDGDKIVFESSSGGQ--------------WDIDKNDLA 358 (425)
T ss_pred --CCcceEEECCCCCceeEeeccCCC---------CcCccCCCCCCEEEEEeccCCc--------------eeeEEeccC
Confidence 567999999999999999875432 2479999999999999854332 268888877
Q ss_pred CCc-eeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497 589 GSG-LRRLTWNGYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 589 ~~~-~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
.+. .+.++ .......+.|.++|+.++.....+
T Consensus 359 ~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 359 SGGKIRILT-STYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred CCCcEEEcc-ccccCCCCCcCCCCceEEEeccCC
Confidence 665 55555 455667999999999997766555
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.80 E-value=2.6e-15 Score=152.56 Aligned_cols=462 Identities=13% Similarity=0.123 Sum_probs=269.8
Q ss_pred CCcceEEEEeecCCceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcc
Q 039497 2 EPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKT 81 (642)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~ 81 (642)
+|.++++-+.+ ..|....++..- -...++++ .........|| |||+.+|... ..-.+||.. ++--+.
T Consensus 64 Sp~g~lllavd----E~g~~~lvs~~~----r~Vlh~f~-fk~~v~~i~fS-Png~~fav~~--gn~lqiw~~-P~~~~~ 130 (893)
T KOG0291|consen 64 SPDGTLLLAVD----ERGRALLVSLLS----RSVLHRFN-FKRGVGAIKFS-PNGKFFAVGC--GNLLQIWHA-PGEIKN 130 (893)
T ss_pred CCCceEEEEEc----CCCcEEEEeccc----ceeeEEEe-ecCccceEEEC-CCCcEEEEEe--cceeEEEec-Ccchhc
Confidence 56666666644 456666666653 13334444 33446788899 9999998543 345788886 221110
Q ss_pred cccCCCCCCcccc------cccc-CCCEEEEEEeccCCCcccccccceEEEEcc-CCceEecccCCCccCCceeCCCCcE
Q 039497 82 ELLPSIPCSLFHD------RPVA-RNNKLFFISAHEQPDQIFKSWSALYSTDLK-ASKFTRLTPYGVVDYSPSVSYSGKF 153 (642)
Q Consensus 82 ~~~~~~~~~~~~~------~~~~-~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~lt~~~~~~~~~~~SPDG~~ 153 (642)
+-.+-..+.++.. ...| +|.+++.+...+-. ..||.++.. +-.+..+..+..+.....|+.|...
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s-------~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~ 203 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLS-------ARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLD 203 (893)
T ss_pred ccCcceEeeeecCCccceeEEEeccCCceEEeccccce-------EEEEEeccccccceEeccCCCcceEEEEeccCcce
Confidence 1111111122221 2233 56666666555422 246655433 2345667777766666667777766
Q ss_pred EEEEecCCCCCCCCCCCCeeeEEEEEec-----------------------CCCc--ee-----E----eecCC---Ccc
Q 039497 154 IAVASYESRPWPGEFHELNTDIVVFQES-----------------------DPNK--RV-----I----VCERG---GWP 196 (642)
Q Consensus 154 la~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------~g~~--~~-----l----~~~~~---~~~ 196 (642)
|..++.++ .|++|... .++. .+ + ..... ...
T Consensus 204 l~tvskdG------------~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa 271 (893)
T KOG0291|consen 204 LYTVSKDG------------ALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAA 271 (893)
T ss_pred EEEEecCc------------eEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeee
Confidence 66665444 23333222 1111 00 0 00111 123
Q ss_pred eEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEe
Q 039497 197 TWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL 276 (642)
Q Consensus 197 ~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~ 276 (642)
++.+...++++. -..|...||.++--. .+..+.-....+..++|+.-|.+|++....- ..+-+|++
T Consensus 272 ~fH~~t~~lvvg-FssG~f~LyelP~f~---------lih~LSis~~~I~t~~~N~tGDWiA~g~~kl----gQLlVweW 337 (893)
T KOG0291|consen 272 AFHKGTNLLVVG-FSSGEFGLYELPDFN---------LIHSLSISDQKILTVSFNSTGDWIAFGCSKL----GQLLVWEW 337 (893)
T ss_pred eccCCceEEEEE-ecCCeeEEEecCCce---------EEEEeecccceeeEEEecccCCEEEEcCCcc----ceEEEEEe
Confidence 566666666665 345666677654222 3444444455677788888999999965443 36777777
Q ss_pred --------ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEee--eCCCccEEcCCCCEEEE
Q 039497 277 --------TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLR--LNGSFPSFSPDGGLIVF 346 (642)
Q Consensus 277 --------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~ 346 (642)
+.++...+...+.||||+.|+.-..+++. .+|-..- .-=..+... .....+.|+..|+.++.
T Consensus 338 qsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKV------KvWn~~S--gfC~vTFteHts~Vt~v~f~~~g~~lls 409 (893)
T KOG0291|consen 338 QSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKV------KVWNTQS--GFCFVTFTEHTSGVTAVQFTARGNVLLS 409 (893)
T ss_pred eccceeeeccccccceeeEEECCCCcEEEeccCCCcE------EEEeccC--ceEEEEeccCCCceEEEEEEecCCEEEE
Confidence 34556667788999999999998877773 3332221 100111111 12245688999986666
Q ss_pred EecCCCceeEEEEECCCCCee-EEeecCC--ceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCcc
Q 039497 347 NHDFELNAGIKIAKSDGSKRW-TLIKDRT--AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEI 423 (642)
Q Consensus 347 ~~~~~~~~~l~~~d~~~~~~~-~l~~~~~--~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 423 (642)
.+- + +.+..+|+....-. ..+.... ...++..|.|..+.... .+.-.+.+|.+.+ |.
T Consensus 410 sSL-D--GtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~------~d~F~IfvWS~qT--------Gq--- 469 (893)
T KOG0291|consen 410 SSL-D--GTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGA------QDSFEIFVWSVQT--------GQ--- 469 (893)
T ss_pred eec-C--CeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeec------cceEEEEEEEeec--------Ce---
Confidence 543 3 45666677655433 3333332 34566677788766665 3467889999987 44
Q ss_pred ccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC--CccccceeeCCCCCCcccceeEecCCCEEEEE
Q 039497 424 PCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN--GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFS 501 (642)
Q Consensus 424 ~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~--g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~ 501 (642)
....|..++ +.+..+.|+|+|..|+-.+.+ ..|.+||+-. |+ ++.|.-. ..+..++|+|||+.|+++
T Consensus 470 --llDiLsGHE-gPVs~l~f~~~~~~LaS~SWD---kTVRiW~if~s~~~----vEtl~i~-sdvl~vsfrPdG~elaVa 538 (893)
T KOG0291|consen 470 --LLDILSGHE-GPVSGLSFSPDGSLLASGSWD---KTVRIWDIFSSSGT----VETLEIR-SDVLAVSFRPDGKELAVA 538 (893)
T ss_pred --eeehhcCCC-CcceeeEEccccCeEEecccc---ceEEEEEeeccCce----eeeEeec-cceeEEEEcCCCCeEEEE
Confidence 566677777 888889999999988877643 2667777643 34 3444432 356788999999999999
Q ss_pred ecCCCCCCCCceeEEEEeCCCCceE-----------------EeeecCCCCCCCcccccccceEEcCCCCEEEEEEe
Q 039497 502 SNRHNPDNVEAFSLYVIKPDGSGLR-----------------RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN 561 (642)
Q Consensus 502 ~~~~~~~~~~~~~l~~~d~~~~~~~-----------------~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~ 561 (642)
.-++. |-.||...+... .++..+ ......+..+.+|+||+.|+....
T Consensus 539 Tldgq--------Itf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~-----sa~~K~Ftti~ySaDG~~IlAgG~ 602 (893)
T KOG0291|consen 539 TLDGQ--------ITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAEN-----SAKGKTFTTICYSADGKCILAGGE 602 (893)
T ss_pred Eecce--------EEEEEhhhceeeccccchhhccccccccceeehhh-----cccCCceEEEEEcCCCCEEEecCC
Confidence 98864 777877543322 111110 011235678999999998876554
No 32
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.78 E-value=1.2e-15 Score=148.74 Aligned_cols=323 Identities=17% Similarity=0.172 Sum_probs=168.0
Q ss_pred eeeEEEecCCCCCCCCCceeeecCCceee-----eeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCcc
Q 039497 18 GFDVFSIKSPFVNAPKFHEHRLTDGTSIN-----FNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLF 92 (642)
Q Consensus 18 ~~~i~~~~~~~~~~~~~~~~rlt~~~~~~-----~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~ 92 (642)
+..-|.-+..| -+.+|||...+.. .++.|+ +||++|+|.+.++|..
T Consensus 10 ~~~~~~D~~TG-----~~VtrLT~~~~~~h~~YF~~~~ft-~dG~kllF~s~~dg~~----------------------- 60 (386)
T PF14583_consen 10 EFKTWIDPDTG-----HRVTRLTPPDGHSHRLYFYQNCFT-DDGRKLLFASDFDGNR----------------------- 60 (386)
T ss_dssp -EEEEE-TTT-------EEEE-S-TTS-EE---TTS--B--TTS-EEEEEE-TTSS------------------------
T ss_pred ceeEEeCCCCC-----ceEEEecCCCCcccceeecCCCcC-CCCCEEEEEeccCCCc-----------------------
Confidence 45788999998 8899999655533 567788 8888888887765543
Q ss_pred ccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCc-cCCceeCCCCcEEEEEecCCCCCCCCCCCC
Q 039497 93 HDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVV-DYSPSVSYSGKFIAVASYESRPWPGEFHEL 171 (642)
Q Consensus 93 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~-~~~~~~SPDG~~la~~~~~~~~~~~~~~~~ 171 (642)
+||.+++++++++|||..+.. .....+||+.+.|.|.....
T Consensus 61 ----------------------------nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~---------- 102 (386)
T PF14583_consen 61 ----------------------------NLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGR---------- 102 (386)
T ss_dssp ----------------------------EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTT----------
T ss_pred ----------------------------ceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCC----------
Confidence 577779999999999987644 34678999999999887544
Q ss_pred eeeEEEEEecCCCceeEeecCCCc---ceEee--CCeEEE-EEe-cC-----------------CCceEEEEEecCCCcc
Q 039497 172 NTDIVVFQESDPNKRVIVCERGGW---PTWSG--DSTIYF-HRQ-AD-----------------DGWWSIFRVSFPENLE 227 (642)
Q Consensus 172 ~~~l~~~~~~~g~~~~l~~~~~~~---~~wsp--dg~~~~-~~~-~~-----------------~g~~~l~~~~~~~~~~ 227 (642)
.|+.+++++.+.+.|......+ -.|.. |++.++ +.. .. .-...|+.+++.+|
T Consensus 103 --~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG-- 178 (386)
T PF14583_consen 103 --SLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG-- 178 (386)
T ss_dssp --EEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT---
T ss_pred --eEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC--
Confidence 7999999999988887755543 37764 444443 321 11 11238889999988
Q ss_pred cccCCccceeeCCCCCccccceeec-CCcEEEEEEeccCCc-eeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCC
Q 039497 228 FLGFPIAPTRVTPPGVHCFTPAAFH-DGKRLAVATRRKNRN-FRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGES 305 (642)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~~~~~~Sp-dG~~l~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~ 305 (642)
+.+.+........++.+|| |...|+|+-.-.-.. ...||+.+. ++..
T Consensus 179 ------~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~-------------------------dg~~ 227 (386)
T PF14583_consen 179 ------ERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT-------------------------DGSN 227 (386)
T ss_dssp -------EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET-------------------------TS--
T ss_pred ------ceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc-------------------------CCCc
Confidence 6677766666677888887 456666654322111 124444332 1110
Q ss_pred CCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecC--CCceeEEEEECCCCCeeEEeecCCceeeeeecC
Q 039497 306 TEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDF--ELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPT 383 (642)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~--~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spd 383 (642)
.+ .+..... . ....+.-|+|||+.|.|.... .....|.-+++++++.+.+.......++.-++|
T Consensus 228 -------~~--~v~~~~~-~----e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~D 293 (386)
T PF14583_consen 228 -------VK--KVHRRME-G----ESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHFMSSPD 293 (386)
T ss_dssp --------E--ESS---T-T----EEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEEEE-TT
T ss_pred -------ce--eeecCCC-C----cccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeeeEEcCC
Confidence 00 0000000 0 011355899999999997652 223457778898888777665445667888899
Q ss_pred CCEEEEEEcC-CCccc------CCCeEEEEEEEeecCCCCCCCCCccccceEEcccc---------C-CCCccCcEECCC
Q 039497 384 EKHVIYTSTG-PIFQS------ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE---------E-TGNNAFPSCSPD 446 (642)
Q Consensus 384 g~~l~~~~~~-~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~-~~~~~~~~~SpD 446 (642)
|+.++=-... +.... -.....|+.++. . .+ ....|..+ . .....++.||||
T Consensus 294 g~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~--~-----~~-----~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPD 361 (386)
T PF14583_consen 294 GKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDV--E-----AG-----RFRKLARHDTSWKVLDGDRQVTHPHPSFSPD 361 (386)
T ss_dssp SSEEEEEE-------------------EEEEEET--T-----TT-----EEEEEEE-------BTTBSSTT----EE-TT
T ss_pred CCEEEecCCCCCccccccccceecCCcEEEEecc--c-----cC-----ceeeeeeccCcceeecCCCccCCCCCccCCC
Confidence 9865432221 10000 012235555544 2 11 22222221 1 113457899999
Q ss_pred CCeEEEEeCCCCceeEEEEECC
Q 039497 447 GKFLVFRSGRSGHKNLFVLDAV 468 (642)
Q Consensus 447 g~~l~~~~~~~g~~~l~~~d~~ 468 (642)
|++|+|.++..|...||++++.
T Consensus 362 gk~VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 362 GKWVLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp SSEEEEEE-TTSS-EEEEEE--
T ss_pred CCEEEEECCCCCCccEEEEeCc
Confidence 9999999999999999999875
No 33
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.75 E-value=4.6e-16 Score=158.39 Aligned_cols=241 Identities=23% Similarity=0.290 Sum_probs=161.9
Q ss_pred CCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecC-------------------CceeeeeecCCCEEEEEEc
Q 039497 332 GSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDR-------------------TAFYNSWSPTEKHVIYTST 392 (642)
Q Consensus 332 ~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-------------------~~~~~~~spdg~~l~~~~~ 392 (642)
...+.|||||++|+|+.. .+||+.++.++..++++.++ ....+.|||||++|+|...
T Consensus 45 ~~~~~~sP~g~~~~~v~~----~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 45 LQDAKWSPDGKYIAFVRD----NNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp BSEEEE-SSSTEEEEEET----TEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred cccceeecCCCeeEEEec----CceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 356799999999999875 68999999888888888732 2246789999999999886
Q ss_pred CCCcc---------------------------cCCCeEEEEEEEeecCCCCCCCCCccccceEEccc-----cCCCCccC
Q 039497 393 GPIFQ---------------------------SERATVQIARVSFQLDPSDDNNREEIPCDVKILTK-----EETGNNAF 440 (642)
Q Consensus 393 ~~~~~---------------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~ 440 (642)
..... .....+.++.++. + ++ +...+.. ........
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~--~-----~~-----~~~~~~~~~~~~~~~~yl~~ 188 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDL--A-----SG-----KTTELDPPNSLNPQDYYLTR 188 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEES--S-----ST-----CCCEE---HHHHTSSEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEEC--C-----CC-----cEEEeeeccccCCCccCccc
Confidence 31100 0123444555544 2 22 2212211 11245667
Q ss_pred cEECCCCCeEEEEe-CC-CCceeEEEEECCCCccccceeeCC---CCCCc--ccceeEe-cCCCEEEEEecCCCCCCCCc
Q 039497 441 PSCSPDGKFLVFRS-GR-SGHKNLFVLDAVNGEFNGDIRQLT---DGPWI--DTMPSWS-PKGDLIAFSSNRHNPDNVEA 512 (642)
Q Consensus 441 ~~~SpDg~~l~~~~-~~-~g~~~l~~~d~~~g~~~~~~~~l~---~~~~~--~~~~~~s-pdG~~l~~~~~~~~~~~~~~ 512 (642)
+.|++|++.|++.. +| .....|++.|..+|+. +.+. ...+. ...+.|. +++..+++.+... +.
T Consensus 189 v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~----~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~-----G~ 259 (353)
T PF00930_consen 189 VGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET----RVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD-----GY 259 (353)
T ss_dssp EEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC----EEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT-----SS
T ss_pred ceecCCCcEEEEEEcccCCCEEEEEEEECCCCce----eEEEEecCCcceeeecccccccCCCCEEEEEEEcC-----CC
Confidence 89999999555433 33 3455888999988774 3221 22221 1234555 8999998888854 68
Q ss_pred eeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcC-CCc
Q 039497 513 FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLD-GSG 591 (642)
Q Consensus 513 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 591 (642)
.+||+++.+++..+.||...... ...+.|+++++.|+|++..... ...+||.++++ ++.
T Consensus 260 ~hly~~~~~~~~~~~lT~G~~~V--------~~i~~~d~~~~~iyf~a~~~~p------------~~r~lY~v~~~~~~~ 319 (353)
T PF00930_consen 260 RHLYLYDLDGGKPRQLTSGDWEV--------TSILGWDEDNNRIYFTANGDNP------------GERHLYRVSLDSGGE 319 (353)
T ss_dssp EEEEEEETTSSEEEESS-SSS-E--------EEEEEEECTSSEEEEEESSGGT------------TSBEEEEEETTETTE
T ss_pred cEEEEEcccccceeccccCceee--------cccceEcCCCCEEEEEecCCCC------------CceEEEEEEeCCCCC
Confidence 99999999999999998754331 1357899999999999987442 24599999999 999
Q ss_pred eeeccCCCCCCCCcEEecCCceEEee
Q 039497 592 LRRLTWNGYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 592 ~~~lt~~~~~~~~~~~s~dg~~~~~~ 617 (642)
+++||.......++.|||||++++-.
T Consensus 320 ~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 320 PKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp EEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred eEeccCCCCCceEEEECCCCCEEEEE
Confidence 99999876664589999999998543
No 34
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.73 E-value=2.7e-15 Score=133.18 Aligned_cols=265 Identities=17% Similarity=0.180 Sum_probs=178.8
Q ss_pred EEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCc
Q 039497 204 IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFH 283 (642)
Q Consensus 204 ~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~ 283 (642)
++.+..+-|- .|..+...+|. ....+...+..+..+.++||++.|+.+. ...|++||+..+..-
T Consensus 11 viLvsA~YDh--TIRfWqa~tG~-------C~rTiqh~dsqVNrLeiTpdk~~LAaa~------~qhvRlyD~~S~np~- 74 (311)
T KOG0315|consen 11 VILVSAGYDH--TIRFWQALTGI-------CSRTIQHPDSQVNRLEITPDKKDLAAAG------NQHVRLYDLNSNNPN- 74 (311)
T ss_pred eEEEeccCcc--eeeeeehhcCe-------EEEEEecCccceeeEEEcCCcchhhhcc------CCeeEEEEccCCCCC-
Confidence 4444324455 44445556664 5666777788899999999999999854 347999998443211
Q ss_pred ccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC
Q 039497 284 HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG 363 (642)
Q Consensus 284 ~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~ 363 (642)
| .+-|. +. ..+.....|..||++++..++ ++. +.++|+..
T Consensus 75 ---P-------v~t~e--------------------~h-------~kNVtaVgF~~dgrWMyTgse-Dgt--~kIWdlR~ 114 (311)
T KOG0315|consen 75 ---P-------VATFE--------------------GH-------TKNVTAVGFQCDGRWMYTGSE-DGT--VKIWDLRS 114 (311)
T ss_pred ---c-------eeEEe--------------------cc-------CCceEEEEEeecCeEEEecCC-Cce--EEEEeccC
Confidence 0 01111 00 011124578889998766544 444 44556555
Q ss_pred CCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcE
Q 039497 364 SKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPS 442 (642)
Q Consensus 364 ~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 442 (642)
-...++.. ...+..+...|+...|+.... .+.+++|++.. + - ....+..+....+..++
T Consensus 115 ~~~qR~~~~~spVn~vvlhpnQteLis~dq-------sg~irvWDl~~--~------~-----c~~~liPe~~~~i~sl~ 174 (311)
T KOG0315|consen 115 LSCQRNYQHNSPVNTVVLHPNQTELISGDQ-------SGNIRVWDLGE--N------S-----CTHELIPEDDTSIQSLT 174 (311)
T ss_pred cccchhccCCCCcceEEecCCcceEEeecC-------CCcEEEEEccC--C------c-----cccccCCCCCcceeeEE
Confidence 44444433 677889999999988887753 78999999966 2 2 23444444436788899
Q ss_pred ECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC---CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEe
Q 039497 443 CSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT---DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIK 519 (642)
Q Consensus 443 ~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~---~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d 519 (642)
..|||++++.+.++ ...|.|++-+++.+++++.++ .+......+.+|||+++|+..+.+.. +++|+
T Consensus 175 v~~dgsml~a~nnk---G~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt--------v~iwn 243 (311)
T KOG0315|consen 175 VMPDGSMLAAANNK---GNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT--------VKIWN 243 (311)
T ss_pred EcCCCcEEEEecCC---ccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce--------EEEEe
Confidence 99999999877754 378999987666533344443 34556677899999999999998875 89999
Q ss_pred CCCC-ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 520 PDGS-GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 520 ~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
.++- +.+..+. +.+. .+.+.+||.||++|+..+++.
T Consensus 244 ~~~~~kle~~l~-gh~r-------WvWdc~FS~dg~YlvTassd~ 280 (311)
T KOG0315|consen 244 TDDFFKLELVLT-GHQR-------WVWDCAFSADGEYLVTASSDH 280 (311)
T ss_pred cCCceeeEEEee-cCCc-------eEEeeeeccCccEEEecCCCC
Confidence 8876 3333333 4555 678999999999999888875
No 35
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.73 E-value=3.5e-15 Score=145.48 Aligned_cols=328 Identities=20% Similarity=0.205 Sum_probs=165.2
Q ss_pred ceEEEEccCCceEecccCCCc-----cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC-
Q 039497 121 ALYSTDLKASKFTRLTPYGVV-----DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG- 194 (642)
Q Consensus 121 ~l~~~~~~~~~~~~lt~~~~~-----~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~- 194 (642)
+-|.-+..+.++++||..... -..+.|++||++|+|.++.. +..++|++++++++.+|||...+.
T Consensus 12 ~~~~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~d---------g~~nly~lDL~t~~i~QLTdg~g~~ 82 (386)
T PF14583_consen 12 KTWIDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFD---------GNRNLYLLDLATGEITQLTDGPGDN 82 (386)
T ss_dssp EEEE-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TT---------SS-EEEEEETTT-EEEE---SS-B-
T ss_pred eEEeCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccC---------CCcceEEEEcccCEEEECccCCCCC
Confidence 345545566688999987653 36789999999999988755 677999999999999999996542
Q ss_pred --cceEeeCCe-EEEEEecCCCceEEEEEecCCCcccccCCccceee-CCCCCcccccee--ecCCcEEEEEEeccCCce
Q 039497 195 --WPTWSGDST-IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRV-TPPGVHCFTPAA--FHDGKRLAVATRRKNRNF 268 (642)
Q Consensus 195 --~~~wspdg~-~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~--SpdG~~l~~~~~~~~~~~ 268 (642)
...++|+++ ++|+.. ..+|+++++.+. +.+.| ..++.......| ..|+++++.....+. ..
T Consensus 83 ~~g~~~s~~~~~~~Yv~~----~~~l~~vdL~T~--------e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~-d~ 149 (386)
T PF14583_consen 83 TFGGFLSPDDRALYYVKN----GRSLRRVDLDTL--------EERVVYEVPDDWKGYGTWVANSDCTKLVGIEISRE-DW 149 (386)
T ss_dssp TTT-EE-TTSSEEEEEET----TTEEEEEETTT----------EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGG-G-
T ss_pred ccceEEecCCCeEEEEEC----CCeEEEEECCcC--------cEEEEEECCcccccccceeeCCCccEEEEEEEeeh-hc
Confidence 358889985 555552 138999999997 44443 223322222333 457877766543221 00
Q ss_pred eeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC-CCceeEEeeeCCCccEEcC-CCCEEEE
Q 039497 269 RHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS-PVKELRMLRLNGSFPSFSP-DGGLIVF 346 (642)
Q Consensus 269 ~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~sp-dg~~l~~ 346 (642)
..+.-|+- ... .+.. +....+....++. ....+........++.+|| |...|+|
T Consensus 150 ~~l~~~~~-------f~e-~~~a----------------~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~f 205 (386)
T PF14583_consen 150 KPLTKWKG-------FRE-FYEA----------------RPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMF 205 (386)
T ss_dssp ----SHHH-------HHH-HHHC-------------------EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEE
T ss_pred cCccccHH-------HHH-HHhh----------------CCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEE
Confidence 00000000 000 0000 0001111122222 2111111111224678888 4677888
Q ss_pred EecC---CCceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCC
Q 039497 347 NHDF---ELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR 420 (642)
Q Consensus 347 ~~~~---~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 420 (642)
+.+. ....+||+++.+++..+.+.. ...+.+-.|+|||+.|+|.... .......|+.++. + .+
T Consensus 206 CHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~----~~~~~~~i~~~d~--~-----t~ 274 (386)
T PF14583_consen 206 CHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYT----PGGQDFWIAGYDP--D-----TG 274 (386)
T ss_dssp EE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEE----TTT--EEEEEE-T--T-----T-
T ss_pred eccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeec----CCCCceEEEeeCC--C-----CC
Confidence 7653 224589999999998777755 4456678999999999998752 2344556777766 3 23
Q ss_pred CccccceEEccccCCCCccCcEECCCCCeEEEEeCCC-------------CceeEEEEECCCCccccceeeCCCC-----
Q 039497 421 EEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRS-------------GHKNLFVLDAVNGEFNGDIRQLTDG----- 482 (642)
Q Consensus 421 ~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~-------------g~~~l~~~d~~~g~~~~~~~~l~~~----- 482 (642)
..+.+...+ ...++.-|+||+.++--.... +..-||++++.+++. ..|..+
T Consensus 275 -----~~~~~~~~p--~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~----~~l~~h~~sw~ 343 (386)
T PF14583_consen 275 -----ERRRLMEMP--WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF----RKLARHDTSWK 343 (386)
T ss_dssp ------EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEE----EEEEE------
T ss_pred -----CceEEEeCC--ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCce----eeeeeccCcce
Confidence 334444333 355788899999887654321 234678889887774 333221
Q ss_pred ------CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC
Q 039497 483 ------PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD 521 (642)
Q Consensus 483 ------~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~ 521 (642)
.....+|.|||||++|+|.++.. +...||.+++.
T Consensus 344 v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~-----G~~~vY~v~i~ 383 (386)
T PF14583_consen 344 VLDGDRQVTHPHPSFSPDGKWVLFRSDME-----GPPAVYLVEIP 383 (386)
T ss_dssp -BTTBSSTT----EE-TTSSEEEEEE-TT-----SS-EEEEEE--
T ss_pred eecCCCccCCCCCccCCCCCEEEEECCCC-----CCccEEEEeCc
Confidence 11345789999999999999986 67889998874
No 36
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.71 E-value=8.1e-14 Score=139.64 Aligned_cols=289 Identities=17% Similarity=0.178 Sum_probs=171.3
Q ss_pred EEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCc
Q 039497 204 IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFH 283 (642)
Q Consensus 204 ~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~ 283 (642)
++++. ..++ .|+.++..++. ....+.. ......++|+|||+.++++... ...+.+||+...
T Consensus 3 ~~~s~-~~d~--~v~~~d~~t~~-------~~~~~~~-~~~~~~l~~~~dg~~l~~~~~~----~~~v~~~d~~~~---- 63 (300)
T TIGR03866 3 AYVSN-EKDN--TISVIDTATLE-------VTRTFPV-GQRPRGITLSKDGKLLYVCASD----SDTIQVIDLATG---- 63 (300)
T ss_pred EEEEe-cCCC--EEEEEECCCCc-------eEEEEEC-CCCCCceEECCCCCEEEEEECC----CCeEEEEECCCC----
Confidence 44444 4456 67777777662 2233332 2235568899999987664332 236777776211
Q ss_pred ccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC
Q 039497 284 HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG 363 (642)
Q Consensus 284 ~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~ 363 (642)
+.+ ..+... .......|+|+|+.++.... ....|+++|+.+
T Consensus 64 ----------~~~-------------------~~~~~~--------~~~~~~~~~~~g~~l~~~~~--~~~~l~~~d~~~ 104 (300)
T TIGR03866 64 ----------EVI-------------------GTLPSG--------PDPELFALHPNGKILYIANE--DDNLVTVIDIET 104 (300)
T ss_pred ----------cEE-------------------EeccCC--------CCccEEEECCCCCEEEEEcC--CCCeEEEEECCC
Confidence 100 000000 01123578999997766543 235799999987
Q ss_pred CCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcE
Q 039497 364 SKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPS 442 (642)
Q Consensus 364 ~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 442 (642)
.+...... ......+.|+|||+.+++.... ...+.+|+... +. ....+... .....+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~------~~~~~~~d~~~---------~~----~~~~~~~~--~~~~~~~ 163 (300)
T TIGR03866 105 RKVLAEIPVGVEPEGMAVSPDGKIVVNTSET------TNMAHFIDTKT---------YE----IVDNVLVD--QRPRFAE 163 (300)
T ss_pred CeEEeEeeCCCCcceEEECCCCCEEEEEecC------CCeEEEEeCCC---------Ce----EEEEEEcC--CCccEEE
Confidence 65333222 3346778999999998887631 23344444422 21 11222211 2345689
Q ss_pred ECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC-------CCcccceeEecCCCEEEEEecCCCCCCCCceeE
Q 039497 443 CSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-------PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSL 515 (642)
Q Consensus 443 ~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~-------~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l 515 (642)
|+|||++|++.+..+ ..|++||+.+++. +..+... ......+.|+|||+.+++..... ..|
T Consensus 164 ~s~dg~~l~~~~~~~--~~v~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~-------~~i 231 (300)
T TIGR03866 164 FTADGKELWVSSEIG--GTVSVIDVATRKV---IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA-------NRV 231 (300)
T ss_pred ECCCCCEEEEEcCCC--CEEEEEEcCccee---eeeeeecccccccccCCccceEECCCCCEEEEEcCCC-------CeE
Confidence 999999988776433 3799999998874 3443311 11123578999999876654432 248
Q ss_pred EEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce-ee
Q 039497 516 YVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL-RR 594 (642)
Q Consensus 516 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~ 594 (642)
.+||+.+++.......+ . .+..+.|+|||++|+.+.... +.|.+||+.++++ .+
T Consensus 232 ~v~d~~~~~~~~~~~~~--~-------~~~~~~~~~~g~~l~~~~~~~----------------~~i~v~d~~~~~~~~~ 286 (300)
T TIGR03866 232 AVVDAKTYEVLDYLLVG--Q-------RVWQLAFTPDEKYLLTTNGVS----------------NDVSVIDVAALKVIKS 286 (300)
T ss_pred EEEECCCCcEEEEEEeC--C-------CcceEEECCCCCEEEEEcCCC----------------CeEEEEECCCCcEEEE
Confidence 99999877665433222 2 356899999999988765432 2799999998874 55
Q ss_pred ccCCCCCCCCcEEec
Q 039497 595 LTWNGYENGTPAWHP 609 (642)
Q Consensus 595 lt~~~~~~~~~~~s~ 609 (642)
+.. +.....++++|
T Consensus 287 ~~~-~~~~~~~~~~~ 300 (300)
T TIGR03866 287 IKV-GRLPWGVVVRP 300 (300)
T ss_pred EEc-ccccceeEeCC
Confidence 543 34445666654
No 37
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.71 E-value=1.4e-15 Score=144.77 Aligned_cols=267 Identities=16% Similarity=0.120 Sum_probs=191.0
Q ss_pred CCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC---CcceEeeCC--eEEEEEecCCCceEE
Q 039497 143 YSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG---GWPTWSGDS--TIYFHRQADDGWWSI 217 (642)
Q Consensus 143 ~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~wspdg--~~~~~~~~~~g~~~l 217 (642)
....||+|++.||..+..+ .+-+|...+....+....+. +.+.|+|.. .-+++. ..||...|
T Consensus 179 s~~~fS~ds~~laT~swsG------------~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~-s~Dgtvkl 245 (459)
T KOG0272|consen 179 SGCSFSRDSKHLATGSWSG------------LVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATA-SADGTVKL 245 (459)
T ss_pred eeeEeecCCCeEEEeecCC------------ceeEeecCCcceeEEEeccccceeeEEEccCCCccceeee-ccCCceee
Confidence 3468999999999988765 67788888886666655443 456999983 344444 67999999
Q ss_pred EEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEE
Q 039497 218 FRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIG 297 (642)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~ 297 (642)
|.++..+ ....++++...+..++|.|+|++|+.+.-+. .-++||+.+......
T Consensus 246 w~~~~e~---------~l~~l~gH~~RVs~VafHPsG~~L~TasfD~-----tWRlWD~~tk~ElL~------------- 298 (459)
T KOG0272|consen 246 WKLSQET---------PLQDLEGHLARVSRVAFHPSGKFLGTASFDS-----TWRLWDLETKSELLL------------- 298 (459)
T ss_pred eccCCCc---------chhhhhcchhhheeeeecCCCceeeeccccc-----chhhcccccchhhHh-------------
Confidence 9887654 4677888888899999999999999865444 778888843221100
Q ss_pred EEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCc
Q 039497 298 YHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTA 375 (642)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~ 375 (642)
. .+- .......+|.|||..++..+ -+....| +|+.++....... ...+
T Consensus 299 -Q-------------------EGH-------s~~v~~iaf~~DGSL~~tGG-lD~~~Rv--WDlRtgr~im~L~gH~k~I 348 (459)
T KOG0272|consen 299 -Q-------------------EGH-------SKGVFSIAFQPDGSLAATGG-LDSLGRV--WDLRTGRCIMFLAGHIKEI 348 (459)
T ss_pred -h-------------------ccc-------ccccceeEecCCCceeeccC-ccchhhe--eecccCcEEEEecccccce
Confidence 0 000 01113568999998555432 2333444 4777776544443 5568
Q ss_pred eeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCC-CCeEEEEe
Q 039497 376 FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD-GKFLVFRS 454 (642)
Q Consensus 376 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD-g~~l~~~~ 454 (642)
..+.|||+|-.|+..+ .++..+||++.. .. ....+..+. ..+..+.|+|+ |++|+..+
T Consensus 349 ~~V~fsPNGy~lATgs-------~Dnt~kVWDLR~--------r~-----~ly~ipAH~-nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 349 LSVAFSPNGYHLATGS-------SDNTCKVWDLRM--------RS-----ELYTIPAHS-NLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred eeEeECCCceEEeecC-------CCCcEEEeeecc--------cc-----cceeccccc-chhhheEecccCCeEEEEcc
Confidence 8999999999998876 488999999976 12 556666666 78899999995 55555444
Q ss_pred CCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCC
Q 039497 455 GRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHN 506 (642)
Q Consensus 455 ~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~ 506 (642)
. ++ .+-+|...+.+. ++.|..+...+.++.+|+||.+|+..+-+..
T Consensus 408 y-D~--t~kiWs~~~~~~---~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT 453 (459)
T KOG0272|consen 408 Y-DN--TVKIWSTRTWSP---LKSLAGHEGKVISLDISPDSQAIATSSFDRT 453 (459)
T ss_pred c-Cc--ceeeecCCCccc---chhhcCCccceEEEEeccCCceEEEeccCce
Confidence 3 33 677788888887 8889999899999999999999998887653
No 38
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.68 E-value=4.9e-15 Score=131.59 Aligned_cols=225 Identities=15% Similarity=0.088 Sum_probs=165.7
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEE
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV 408 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~ 408 (642)
..+.++||++.|+. .+..+|.++|+.++...++.. ...+..+.|--||+++|..+ +++.++||++
T Consensus 44 NrLeiTpdk~~LAa----a~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgs-------eDgt~kIWdl 112 (311)
T KOG0315|consen 44 NRLEITPDKKDLAA----AGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGS-------EDGTVKIWDL 112 (311)
T ss_pred eeEEEcCCcchhhh----ccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecC-------CCceEEEEec
Confidence 35678999999988 556899999999888755544 46788999999999998776 4899999999
Q ss_pred EeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-CCCCccc
Q 039497 409 SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDT 487 (642)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~~~ 487 (642)
.. - ...++.... ..+..+...|+-..|+... ++| .|++||+..... ..++. .....+.
T Consensus 113 R~--~------------~~qR~~~~~-spVn~vvlhpnQteLis~d-qsg--~irvWDl~~~~c---~~~liPe~~~~i~ 171 (311)
T KOG0315|consen 113 RS--L------------SCQRNYQHN-SPVNTVVLHPNQTELISGD-QSG--NIRVWDLGENSC---THELIPEDDTSIQ 171 (311)
T ss_pred cC--c------------ccchhccCC-CCcceEEecCCcceEEeec-CCC--cEEEEEccCCcc---ccccCCCCCccee
Confidence 76 2 344444444 5677889999888876543 333 899999976543 34444 3344667
Q ss_pred ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc----eEEeeec-CCCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG----LRRIHVA-GPEGSGDVDRERINHVCFSADGEWLLFTANL 562 (642)
Q Consensus 488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~----~~~l~~~-~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~ 562 (642)
++...|||+.|+-..+.++ .|+|++-+.. ++++++. .+++ ......+|||+++|+..+.+
T Consensus 172 sl~v~~dgsml~a~nnkG~--------cyvW~l~~~~~~s~l~P~~k~~ah~~-------~il~C~lSPd~k~lat~ssd 236 (311)
T KOG0315|consen 172 SLTVMPDGSMLAAANNKGN--------CYVWRLLNHQTASELEPVHKFQAHNG-------HILRCLLSPDVKYLATCSSD 236 (311)
T ss_pred eEEEcCCCcEEEEecCCcc--------EEEEEccCCCccccceEhhheecccc-------eEEEEEECCCCcEEEeecCC
Confidence 8899999999988887775 9999986542 2333332 2333 56778999999999999887
Q ss_pred CCcccCCCCCCCCCCCCCcEEEEEcCC--CceeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497 563 GAVMAEPVSWPNQFQPYGDLYVVKLDG--SGLRRLTWNGYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
. .++.|+.++ +...+|+.+..++.+.+||.||+||++..+.+
T Consensus 237 k-----------------tv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~ 280 (311)
T KOG0315|consen 237 K-----------------TVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDH 280 (311)
T ss_pred c-----------------eEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCC
Confidence 6 455555554 34567777878889999999999999876543
No 39
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.68 E-value=3.5e-13 Score=135.00 Aligned_cols=265 Identities=16% Similarity=0.132 Sum_probs=161.4
Q ss_pred eEEEEEecCCCceeEeecCC--CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceee
Q 039497 174 DIVVFQESDPNKRVIVCERG--GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAF 251 (642)
Q Consensus 174 ~l~~~~~~~g~~~~l~~~~~--~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 251 (642)
.|++|++.+++..+...... ..+.|+|||+.+|+....++ .|+.++..++ +.............++++
T Consensus 12 ~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~--~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~ 81 (300)
T TIGR03866 12 TISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSD--TIQVIDLATG--------EVIGTLPSGPDPELFALH 81 (300)
T ss_pred EEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCC--eEEEEECCCC--------cEEEeccCCCCccEEEEC
Confidence 78899998887655544322 34699999976655434445 6777787776 333222222234567889
Q ss_pred cCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeC
Q 039497 252 HDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLN 331 (642)
Q Consensus 252 pdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (642)
|||+.+++.... ...+.+||+... +.+.. +.. ...
T Consensus 82 ~~g~~l~~~~~~----~~~l~~~d~~~~--------------~~~~~-------------------~~~--------~~~ 116 (300)
T TIGR03866 82 PNGKILYIANED----DNLVTVIDIETR--------------KVLAE-------------------IPV--------GVE 116 (300)
T ss_pred CCCCEEEEEcCC----CCeEEEEECCCC--------------eEEeE-------------------eeC--------CCC
Confidence 999987664322 236777776221 00000 000 011
Q ss_pred CCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 332 GSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 332 ~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
...+.|+|||+.+++.... ...++.++..+++...... ......+.|+|||+.|++... .++.+.+|++..
T Consensus 117 ~~~~~~~~dg~~l~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~~~~v~i~d~~~ 188 (300)
T TIGR03866 117 PEGMAVSPDGKIVVNTSET--TNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSE------IGGTVSVIDVAT 188 (300)
T ss_pred cceEEECCCCCEEEEEecC--CCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcC------CCCEEEEEEcCc
Confidence 1245899999988876532 2346667877765433222 445567899999999887652 356788888754
Q ss_pred ecCCCCCCCCCccccceEEcccc------CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC
Q 039497 411 QLDPSDDNNREEIPCDVKILTKE------ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW 484 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~ 484 (642)
+. ....+... .......+.|+|||++++..... ...|.+||+.+++. ...+.. ..
T Consensus 189 --------~~-----~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~--~~~i~v~d~~~~~~---~~~~~~-~~ 249 (300)
T TIGR03866 189 --------RK-----VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP--ANRVAVVDAKTYEV---LDYLLV-GQ 249 (300)
T ss_pred --------ce-----eeeeeeecccccccccCCccceEECCCCCEEEEEcCC--CCeEEEEECCCCcE---EEEEEe-CC
Confidence 11 22222211 00123357899999987665432 23699999988875 333332 23
Q ss_pred cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEE
Q 039497 485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR 527 (642)
Q Consensus 485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 527 (642)
....+.|+|||++|+...... ..|.+||+.+++...
T Consensus 250 ~~~~~~~~~~g~~l~~~~~~~-------~~i~v~d~~~~~~~~ 285 (300)
T TIGR03866 250 RVWQLAFTPDEKYLLTTNGVS-------NDVSVIDVAALKVIK 285 (300)
T ss_pred CcceEEECCCCCEEEEEcCCC-------CeEEEEECCCCcEEE
Confidence 566789999999988765432 239999999887543
No 40
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.68 E-value=3e-14 Score=129.60 Aligned_cols=271 Identities=14% Similarity=0.060 Sum_probs=184.5
Q ss_pred cCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEE
Q 039497 278 LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIK 357 (642)
Q Consensus 278 ~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~ 357 (642)
.++...+....|++|+++|+..+.++. +++|-.-...++..+.+.......-+|+|.|+.|+...- ++.-.||
T Consensus 52 kGH~~Ki~~~~ws~Dsr~ivSaSqDGk------lIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGL-dN~Csiy 124 (343)
T KOG0286|consen 52 KGHLNKIYAMDWSTDSRRIVSASQDGK------LIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGL-DNKCSIY 124 (343)
T ss_pred cccccceeeeEecCCcCeEEeeccCCe------EEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCc-CceeEEE
Confidence 344444555566777766666655555 444444333343333333333345689999999988543 3334444
Q ss_pred EEECCCC--C-----eeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE
Q 039497 358 IAKSDGS--K-----RWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI 429 (642)
Q Consensus 358 ~~d~~~~--~-----~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 429 (642)
++... + .+.+.. .+.+....|-+|+. |+..+ ++....+|+++. +. ..+.
T Consensus 125 --~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~-ilT~S-------GD~TCalWDie~--------g~-----~~~~ 181 (343)
T KOG0286|consen 125 --PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH-ILTGS-------GDMTCALWDIET--------GQ-----QTQV 181 (343)
T ss_pred --ecccccccccceeeeeecCccceeEEEEEcCCCc-eEecC-------CCceEEEEEccc--------ce-----EEEE
Confidence 44432 1 112222 55677778887665 55554 478899999987 34 6677
Q ss_pred ccccCCCCccCcEECC-CCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCC
Q 039497 430 LTKEETGNNAFPSCSP-DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD 508 (642)
Q Consensus 430 l~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~ 508 (642)
+..+. +.+..+.++| |++.++-.+- +..-++||+..|.. .+.+..+...++.+.|.|+|.-++..+++..
T Consensus 182 f~GH~-gDV~slsl~p~~~ntFvSg~c---D~~aklWD~R~~~c---~qtF~ghesDINsv~ffP~G~afatGSDD~t-- 252 (343)
T KOG0286|consen 182 FHGHT-GDVMSLSLSPSDGNTFVSGGC---DKSAKLWDVRSGQC---VQTFEGHESDINSVRFFPSGDAFATGSDDAT-- 252 (343)
T ss_pred ecCCc-ccEEEEecCCCCCCeEEeccc---ccceeeeeccCcce---eEeecccccccceEEEccCCCeeeecCCCce--
Confidence 77776 8889999999 9998776552 34678999998886 5667778888999999999998888877765
Q ss_pred CCCceeEEEEeCCCCceEEeeec-CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEc
Q 039497 509 NVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKL 587 (642)
Q Consensus 509 ~~~~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 587 (642)
..+||+...+...+... .... .+.++.||..|+.|+..+.+. .+.+||.
T Consensus 253 ------cRlyDlRaD~~~a~ys~~~~~~-------gitSv~FS~SGRlLfagy~d~-----------------~c~vWDt 302 (343)
T KOG0286|consen 253 ------CRLYDLRADQELAVYSHDSIIC-------GITSVAFSKSGRLLFAGYDDF-----------------TCNVWDT 302 (343)
T ss_pred ------eEEEeecCCcEEeeeccCcccC-------CceeEEEcccccEEEeeecCC-----------------ceeEeec
Confidence 78889987665444432 1111 578999999999887776654 6777775
Q ss_pred C-CCceeeccCCCCCCCCcEEecCCceEEee
Q 039497 588 D-GSGLRRLTWNGYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 588 ~-~~~~~~lt~~~~~~~~~~~s~dg~~~~~~ 617 (642)
= +.....|..++..+..+..+|||..+.+.
T Consensus 303 lk~e~vg~L~GHeNRvScl~~s~DG~av~Tg 333 (343)
T KOG0286|consen 303 LKGERVGVLAGHENRVSCLGVSPDGMAVATG 333 (343)
T ss_pred cccceEEEeeccCCeeEEEEECCCCcEEEec
Confidence 4 44567888888888899999999888764
No 41
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.64 E-value=1.2e-14 Score=138.57 Aligned_cols=264 Identities=12% Similarity=0.071 Sum_probs=182.5
Q ss_pred ccccceeecCCcEEEEEEeccCCceeeEEEEEe--------ecCCCCcccCCeecCC--CCEEEEEEeecCCCCCCcccc
Q 039497 244 HCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL--------TLNPNFHHYNPFVSAN--SEFIGYHRFRGESTEGQSTIP 313 (642)
Q Consensus 244 ~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~--------~~~~~~~~~~~~~spD--g~~l~~~~~~~~~~~~~~~~~ 313 (642)
.+....||.|++.|+...-.+ .+.+|.. ..++...+....|.|. +..|+....++. ..+
T Consensus 177 Pis~~~fS~ds~~laT~swsG-----~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgt------vkl 245 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSG-----LVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGT------VKL 245 (459)
T ss_pred cceeeEeecCCCeEEEeecCC-----ceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCc------eee
Confidence 455567899999999866554 6677776 3456677778899997 556888777666 333
Q ss_pred eEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEe--ecCCceeeeeecCCCEEEEEE
Q 039497 314 HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI--KDRTAFYNSWSPTEKHVIYTS 391 (642)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~--~~~~~~~~~~spdg~~l~~~~ 391 (642)
|-..-......++.........+|+|+|++|+..+. +....|| |+.++..-.+. +...+..++|.|||..++...
T Consensus 246 w~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Tasf-D~tWRlW--D~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGG 322 (459)
T KOG0272|consen 246 WKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASF-DSTWRLW--DLETKSELLLQEGHSKGVFSIAFQPDGSLAATGG 322 (459)
T ss_pred eccCCCcchhhhhcchhhheeeeecCCCceeeeccc-ccchhhc--ccccchhhHhhcccccccceeEecCCCceeeccC
Confidence 433222222222211122246789999999988776 3445555 66665533222 266789999999999776654
Q ss_pred cCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCc
Q 039497 392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471 (642)
Q Consensus 392 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~ 471 (642)
. +...+||++.. +. .+..|..+. ..+..+.|||+|-.|+..+.+ ...-+||+..-.
T Consensus 323 l-------D~~~RvWDlRt--------gr-----~im~L~gH~-k~I~~V~fsPNGy~lATgs~D---nt~kVWDLR~r~ 378 (459)
T KOG0272|consen 323 L-------DSLGRVWDLRT--------GR-----CIMFLAGHI-KEILSVAFSPNGYHLATGSSD---NTCKVWDLRMRS 378 (459)
T ss_pred c-------cchhheeeccc--------Cc-----EEEEecccc-cceeeEeECCCceEEeecCCC---CcEEEeeecccc
Confidence 3 67789999987 45 677777766 788899999999888876643 367788887555
Q ss_pred cccceeeCCCCCCcccceeEec-CCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEc
Q 039497 472 FNGDIRQLTDGPWIDTMPSWSP-KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS 550 (642)
Q Consensus 472 ~~~~~~~l~~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S 550 (642)
. +..+..+...+..+.|+| .|++|+..+.++. +.+|...+...-+... ++++ .+.++.+|
T Consensus 379 ~---ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t--------~kiWs~~~~~~~ksLa-GHe~-------kV~s~Dis 439 (459)
T KOG0272|consen 379 E---LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT--------VKIWSTRTWSPLKSLA-GHEG-------KVISLDIS 439 (459)
T ss_pred c---ceecccccchhhheEecccCCeEEEEcccCcc--------eeeecCCCcccchhhc-CCcc-------ceEEEEec
Confidence 4 677888877889999999 5566666665554 7777766654433332 6666 78889999
Q ss_pred CCCCEEEEEEecCC
Q 039497 551 ADGEWLLFTANLGA 564 (642)
Q Consensus 551 ~Dg~~l~~~~~~~~ 564 (642)
+||..|+..+.+..
T Consensus 440 ~d~~~i~t~s~DRT 453 (459)
T KOG0272|consen 440 PDSQAIATSSFDRT 453 (459)
T ss_pred cCCceEEEeccCce
Confidence 99999998886643
No 42
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.63 E-value=2e-13 Score=123.64 Aligned_cols=225 Identities=13% Similarity=0.130 Sum_probs=155.2
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
....++||++.+-.+- ...+.++|+.+++.++... ...+..++||||.++|+..++ +..+.+|++-.
T Consensus 68 dv~~s~dg~~alS~sw---D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSr-------DkTiklwnt~g- 136 (315)
T KOG0279|consen 68 DVVLSSDGNFALSASW---DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSR-------DKTIKLWNTLG- 136 (315)
T ss_pred ceEEccCCceEEeccc---cceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCC-------cceeeeeeecc-
Confidence 4578999996555433 3678888999987666554 567889999999999998875 78899999854
Q ss_pred cCCCCCCCCCccccceEEccccC-CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccccee
Q 039497 412 LDPSDDNNREEIPCDVKILTKEE-TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS 490 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~ 490 (642)
. ....+.... ...+..+.|+|.....++.+.. -+..+.+||+.+-+. ......+.++++.+.
T Consensus 137 --------~-----ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s-~DktvKvWnl~~~~l---~~~~~gh~~~v~t~~ 199 (315)
T KOG0279|consen 137 --------V-----CKYTIHEDSHREWVSCVRFSPNESNPIIVSAS-WDKTVKVWNLRNCQL---RTTFIGHSGYVNTVT 199 (315)
T ss_pred --------c-----EEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc-CCceEEEEccCCcch---hhccccccccEEEEE
Confidence 2 334443332 3678889999985332222211 345899999997765 455666778889999
Q ss_pred EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCC
Q 039497 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV 570 (642)
Q Consensus 491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~ 570 (642)
+||||..++....++ ++++||++.++- +...+... .+.+++|||.--+|......
T Consensus 200 vSpDGslcasGgkdg--------~~~LwdL~~~k~--lysl~a~~-------~v~sl~fspnrywL~~at~~-------- 254 (315)
T KOG0279|consen 200 VSPDGSLCASGGKDG--------EAMLWDLNEGKN--LYSLEAFD-------IVNSLCFSPNRYWLCAATAT-------- 254 (315)
T ss_pred ECCCCCEEecCCCCc--------eEEEEEccCCce--eEeccCCC-------eEeeEEecCCceeEeeccCC--------
Confidence 999999888755554 499999987655 33334344 57899999987766554432
Q ss_pred CCCCCCCCCCcEEEEEcCCCce-eeccCC--C-----CC--CCCcEEecCCceEEeecCCC
Q 039497 571 SWPNQFQPYGDLYVVKLDGSGL-RRLTWN--G-----YE--NGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 571 ~~~~~~~~~~~l~~~~~~~~~~-~~lt~~--~-----~~--~~~~~~s~dg~~~~~~~~~~ 621 (642)
.|-.|+++++.. ..|.-. + .. -.+++||+||+.|++....+
T Consensus 255 ----------sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~ 305 (315)
T KOG0279|consen 255 ----------SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN 305 (315)
T ss_pred ----------ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence 577778877652 222211 1 11 25789999999998766554
No 43
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=2.8e-12 Score=121.27 Aligned_cols=285 Identities=14% Similarity=0.231 Sum_probs=178.5
Q ss_pred ceeeEEEEEee-----------cCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccce-EeeccCCCceeEEeeeCC--
Q 039497 267 NFRHIEIYDLT-----------LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPH-LEPVASPVKELRMLRLNG-- 332 (642)
Q Consensus 267 ~~~~i~~~d~~-----------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-- 332 (642)
....|+.|++. .......+..+|+|++++|+.....+... ....+ +...++....+......+
T Consensus 14 ~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~g---gvaay~iD~~~G~Lt~ln~~~~~g~~ 90 (346)
T COG2706 14 ESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEG---GVAAYRIDPDDGRLTFLNRQTLPGSP 90 (346)
T ss_pred CCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcC---cEEEEEEcCCCCeEEEeeccccCCCC
Confidence 34567777773 23345566778999999998887664421 12222 222222222221111111
Q ss_pred -CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEE---e-ecC----------CceeeeeecCCCEEEEEEcCCCcc
Q 039497 333 -SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTL---I-KDR----------TAFYNSWSPTEKHVIYTSTGPIFQ 397 (642)
Q Consensus 333 -~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l---~-~~~----------~~~~~~~spdg~~l~~~~~~~~~~ 397 (642)
.+.+++++|+.|+......+...++-++.++ ....+ . ..+ ..+...+.||+++|+....+
T Consensus 91 p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG-~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG---- 165 (346)
T COG2706 91 PCYVSVDEDGRFVFVANYHSGSVSVYPLQADG-SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG---- 165 (346)
T ss_pred CeEEEECCCCCEEEEEEccCceEEEEEcccCC-ccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC----
Confidence 5678899999887777655555555554443 22222 1 112 26678999999999999854
Q ss_pred cCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcccccee
Q 039497 398 SERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR 477 (642)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~ 477 (642)
..++.+|+++. +..+ +.....+. +.....++.|+|+|++.+....-++.-.+|.++...|+. ..++
T Consensus 166 --~Dri~~y~~~d--------g~L~-~~~~~~v~--~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~-~~lQ 231 (346)
T COG2706 166 --TDRIFLYDLDD--------GKLT-PADPAEVK--PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKF-EELQ 231 (346)
T ss_pred --CceEEEEEccc--------Cccc-cccccccC--CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceE-EEee
Confidence 67888888864 2211 11222232 224678999999999998888877777888888776774 1222
Q ss_pred eCCCC------CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcC
Q 039497 478 QLTDG------PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSA 551 (642)
Q Consensus 478 ~l~~~------~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~ 551 (642)
.+... ......+..||||++||.. +++. +...+|.+|..+++++.+......+. .+.+..|++
T Consensus 232 ~i~tlP~dF~g~~~~aaIhis~dGrFLYas-NRg~----dsI~~f~V~~~~g~L~~~~~~~teg~------~PR~F~i~~ 300 (346)
T COG2706 232 TIDTLPEDFTGTNWAAAIHISPDGRFLYAS-NRGH----DSIAVFSVDPDGGKLELVGITPTEGQ------FPRDFNINP 300 (346)
T ss_pred eeccCccccCCCCceeEEEECCCCCEEEEe-cCCC----CeEEEEEEcCCCCEEEEEEEeccCCc------CCccceeCC
Confidence 22221 1223456889999976555 4432 56677788888888877665444441 257889999
Q ss_pred CCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCC
Q 039497 552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN 598 (642)
Q Consensus 552 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~ 598 (642)
+|+.|+....+.+.. .+|..|-.+|+++.+...
T Consensus 301 ~g~~Liaa~q~sd~i--------------~vf~~d~~TG~L~~~~~~ 333 (346)
T COG2706 301 SGRFLIAANQKSDNI--------------TVFERDKETGRLTLLGRY 333 (346)
T ss_pred CCCEEEEEccCCCcE--------------EEEEEcCCCceEEecccc
Confidence 999998887766532 778888888888877653
No 44
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.62 E-value=3.5e-13 Score=133.14 Aligned_cols=267 Identities=20% Similarity=0.190 Sum_probs=174.6
Q ss_pred eCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeec--------CCCCcccCCeecCCCCEEEEEEeecCCCCCC
Q 039497 238 VTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL--------NPNFHHYNPFVSANSEFIGYHRFRGESTEGQ 309 (642)
Q Consensus 238 l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~--------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~ 309 (642)
+..+...+..+.|+|+|++|++.... ..+.+|++.. .+........|+|+++.+++...++.
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~-----g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~----- 74 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGD-----GTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKT----- 74 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecC-----cEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCe-----
Confidence 33444567788999999999886543 3788998832 22333457789999988888755433
Q ss_pred cccceEeeccC--CCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCC
Q 039497 310 STIPHLEPVAS--PVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEK 385 (642)
Q Consensus 310 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~ 385 (642)
..+| .+.. ....+.........+.|+++++.++... ....|.++++..++...... ...+..+.|+|+++
T Consensus 75 -i~i~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 148 (289)
T cd00200 75 -IRLW--DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS---RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT 148 (289)
T ss_pred -EEEE--EcCcccceEEEeccCCcEEEEEEcCCCCEEEEec---CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC
Confidence 2222 2222 1111111111224568899977555533 24678889988655444333 44688999999988
Q ss_pred EEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEE
Q 039497 386 HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVL 465 (642)
Q Consensus 386 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~ 465 (642)
.++... .++.+.+|++.. +. ....+..+. ..+..+.|+|+++.|++.+. ...|.+|
T Consensus 149 ~l~~~~-------~~~~i~i~d~~~--------~~-----~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~---~~~i~i~ 204 (289)
T cd00200 149 FVASSS-------QDGTIKLWDLRT--------GK-----CVATLTGHT-GEVNSVAFSPDGEKLLSSSS---DGTIKLW 204 (289)
T ss_pred EEEEEc-------CCCcEEEEEccc--------cc-----cceeEecCc-cccceEEECCCcCEEEEecC---CCcEEEE
Confidence 776654 257888998864 12 334444333 56778999999999988875 3479999
Q ss_pred ECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCccccccc
Q 039497 466 DAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERIN 545 (642)
Q Consensus 466 d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 545 (642)
|+.+++. ...+..+...+..+.|+|++++++....++. |++|++..++...... .... .+.
T Consensus 205 d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--------i~i~~~~~~~~~~~~~-~~~~-------~i~ 265 (289)
T cd00200 205 DLSTGKC---LGTLRGHENGVNSVAFSPDGYLLASGSEDGT--------IRVWDLRTGECVQTLS-GHTN-------SVT 265 (289)
T ss_pred ECCCCce---ecchhhcCCceEEEEEcCCCcEEEEEcCCCc--------EEEEEcCCceeEEEcc-ccCC-------cEE
Confidence 9987775 4555455556778899999776666553443 9999998665544333 3333 567
Q ss_pred ceEEcCCCCEEEEEEecC
Q 039497 546 HVCFSADGEWLLFTANLG 563 (642)
Q Consensus 546 ~~~~S~Dg~~l~~~~~~~ 563 (642)
.+.|+++++.|+..+.++
T Consensus 266 ~~~~~~~~~~l~~~~~d~ 283 (289)
T cd00200 266 SLAWSPDGKRLASGSADG 283 (289)
T ss_pred EEEECCCCCEEEEecCCC
Confidence 899999999888777654
No 45
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.61 E-value=3.8e-12 Score=129.84 Aligned_cols=428 Identities=13% Similarity=0.044 Sum_probs=247.8
Q ss_pred eEEEEccCCceEeccc--CCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---cc
Q 039497 122 LYSTDLKASKFTRLTP--YGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---WP 196 (642)
Q Consensus 122 l~~~~~~~~~~~~lt~--~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~~ 196 (642)
|-.+.+++|+..+.-. +.+...-.+|+|-|..+|....+. .+-+|++.++.-..-....++ .+
T Consensus 86 lrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~------------~v~VWdi~~~~~th~fkG~gGvVssl 153 (775)
T KOG0319|consen 86 LRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADG------------RVKVWDIKNGYCTHSFKGHGGVVSSL 153 (775)
T ss_pred EEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccc------------eEEEEEeeCCEEEEEecCCCceEEEE
Confidence 3444777776554432 344445578999997777765444 788999998876655554443 23
Q ss_pred eEeeCC--eEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEE
Q 039497 197 TWSGDS--TIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIY 274 (642)
Q Consensus 197 ~wspdg--~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~ 274 (642)
.|.|+- .++++. +.++...+|.+..... ....+..+...+..+++++|+..++++.+++ -+.+|
T Consensus 154 ~F~~~~~~~lL~sg-~~D~~v~vwnl~~~~t--------cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDk-----vi~vw 219 (775)
T KOG0319|consen 154 LFHPHWNRWLLASG-ATDGTVRVWNLNDKRT--------CLHTMILHKSAVTSLAFSEDSLELLSVGRDK-----VIIVW 219 (775)
T ss_pred EeCCccchhheeec-CCCceEEEEEcccCch--------HHHHHHhhhhheeeeeeccCCceEEEeccCc-----EEEEe
Confidence 677776 355555 6677555554443322 2344556666788899999999999977665 89999
Q ss_pred EeecCC-------CCcccCCeecCC-----CCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeee---CCC-ccEEc
Q 039497 275 DLTLNP-------NFHHYNPFVSAN-----SEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRL---NGS-FPSFS 338 (642)
Q Consensus 275 d~~~~~-------~~~~~~~~~spD-----g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~s 338 (642)
|+.... .-.......-++ |.++.....++. . .+....+..-.....+. ... .....
T Consensus 220 d~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~------~--~~~d~es~~~~~~~~~~~~~e~~~~~~~~ 291 (775)
T KOG0319|consen 220 DLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGV------V--QYWDSESGKCVYKQRQSDSEEIDHLLAIE 291 (775)
T ss_pred ehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCce------E--EEEecccchhhhhhccCCchhhhcceecc
Confidence 992110 001111222222 223333322221 1 11111111000000000 011 11223
Q ss_pred CCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceee-eeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCC
Q 039497 339 PDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS 415 (642)
Q Consensus 339 pdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~-~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 415 (642)
..++.++... ..+|+++|.++.+...-.. +..+.++ .|-|+.++|++.++ .+.+++|....
T Consensus 292 ~~~~~l~vta----eQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATN-------s~~lr~y~~~~----- 355 (775)
T KOG0319|consen 292 SMSQLLLVTA----EQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATN-------SPELRLYTLPT----- 355 (775)
T ss_pred ccCceEEEEc----cceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeC-------CCceEEEecCC-----
Confidence 3444444433 4789999888766543322 5556666 45778889988875 67888886543
Q ss_pred CCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCC
Q 039497 416 DDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495 (642)
Q Consensus 416 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG 495 (642)
- ..+.+..+. ..+.++....+|-.| .+..++..-.||+++-...+. ..+.+.+.+...+..++++..|
T Consensus 356 ----~-----~c~ii~GH~-e~vlSL~~~~~g~ll-at~sKD~svilWr~~~~~~~~-~~~a~~~gH~~svgava~~~~~ 423 (775)
T KOG0319|consen 356 ----S-----YCQIIPGHT-EAVLSLDVWSSGDLL-ATGSKDKSVILWRLNNNCSKS-LCVAQANGHTNSVGAVAGSKLG 423 (775)
T ss_pred ----C-----ceEEEeCch-hheeeeeecccCcEE-EEecCCceEEEEEecCCcchh-hhhhhhcccccccceeeecccC
Confidence 1 445556655 666666645577444 455566666778775433332 1133445566667778888777
Q ss_pred CEEEEEecCCCCCCCCceeEEEEeCCCCceEE--eee------cCCCCCCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR--IHV------AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA 567 (642)
Q Consensus 496 ~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--l~~------~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~ 567 (642)
--++.+...+ ..|.+|++...+... +.. ..+.. .++.++.+|+.+.|+..+.+...
T Consensus 424 asffvsvS~D-------~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdK-------dIN~Vaia~ndkLiAT~SqDkta-- 487 (775)
T KOG0319|consen 424 ASFFVSVSQD-------CTLKLWDLPKSKETAFPIVLTCRYTERAHDK-------DINCVAIAPNDKLIATGSQDKTA-- 487 (775)
T ss_pred ccEEEEecCC-------ceEEEecCCCcccccccceehhhHHHHhhcc-------cccceEecCCCceEEecccccce--
Confidence 5555444432 237888876532211 111 11222 46789999999988888877654
Q ss_pred CCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEee-----------------cCCCcccccceee
Q 039497 568 EPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGK-----------------LRLEDDIGDKLRG 630 (642)
Q Consensus 568 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~-----------------~~~~~~~~~~~~~ 630 (642)
.||.++ +......|..|...+.++.|+|..+.++++ .++.|+.+.++.-
T Consensus 488 -------------KiW~le-~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra 553 (775)
T KOG0319|consen 488 -------------KIWDLE-QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRA 553 (775)
T ss_pred -------------eeeccc-CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEee
Confidence 888776 555567888888888999999999999876 4455555555555
Q ss_pred eeccc--ceeccC
Q 039497 631 QFDEP--LWISCD 641 (642)
Q Consensus 631 ~~~~~--~~~~~~ 641 (642)
.|=-. ..|||+
T Consensus 554 ~F~~~~~qliS~~ 566 (775)
T KOG0319|consen 554 SFIRNGKQLISAG 566 (775)
T ss_pred eeeeCCcEEEecc
Confidence 55222 246664
No 46
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.60 E-value=6.1e-13 Score=131.45 Aligned_cols=272 Identities=16% Similarity=0.120 Sum_probs=176.8
Q ss_pred CCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEE
Q 039497 281 NFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAK 360 (642)
Q Consensus 281 ~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d 360 (642)
...+..+.|+|+++.|++...++. ..+|-.........+.........+.|+|+++.|+.... ...|++++
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~------i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~~i~i~~ 79 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGT------IKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS---DKTIRLWD 79 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcE------EEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC---CCeEEEEE
Confidence 344556789999999888765433 233322211111111111111236789999988877653 46788889
Q ss_pred CCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCc
Q 039497 361 SDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN 438 (642)
Q Consensus 361 ~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 438 (642)
+..++...... ...+..+.|+|+++.++... .++.+.+|++.. .. ....+..+. ..+
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~--------~~-----~~~~~~~~~-~~i 138 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPDGRILSSSS-------RDKTIKVWDVET--------GK-----CLTTLRGHT-DWV 138 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCCCCEEEEec-------CCCeEEEEECCC--------cE-----EEEEeccCC-CcE
Confidence 88754333322 44688899999977665554 267888888864 12 334444343 567
Q ss_pred cCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEE
Q 039497 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVI 518 (642)
Q Consensus 439 ~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~ 518 (642)
..+.|+|+++.++.... ...|++||+.+++. ...+..+...+..+.|+|+++.|++.+.++. |.+|
T Consensus 139 ~~~~~~~~~~~l~~~~~---~~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~--------i~i~ 204 (289)
T cd00200 139 NSVAFSPDGTFVASSSQ---DGTIKLWDLRTGKC---VATLTGHTGEVNSVAFSPDGEKLLSSSSDGT--------IKLW 204 (289)
T ss_pred EEEEEcCcCCEEEEEcC---CCcEEEEEcccccc---ceeEecCccccceEEECCCcCEEEEecCCCc--------EEEE
Confidence 88999999887776552 23789999987765 4555555556788999999998988887543 9999
Q ss_pred eCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccC
Q 039497 519 KPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTW 597 (642)
Q Consensus 519 d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~ 597 (642)
|+..++...... .... .+..+.|++++..++....++ .|+.|+...+. ...+..
T Consensus 205 d~~~~~~~~~~~-~~~~-------~i~~~~~~~~~~~~~~~~~~~-----------------~i~i~~~~~~~~~~~~~~ 259 (289)
T cd00200 205 DLSTGKCLGTLR-GHEN-------GVNSVAFSPDGYLLASGSEDG-----------------TIRVWDLRTGECVQTLSG 259 (289)
T ss_pred ECCCCceecchh-hcCC-------ceEEEEEcCCCcEEEEEcCCC-----------------cEEEEEcCCceeEEEccc
Confidence 998755443321 2222 467899999976665544232 78888887544 455555
Q ss_pred CCCCCCCcEEecCCceEEeecCCC
Q 039497 598 NGYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 598 ~~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
+...+..+.|+++++++++....+
T Consensus 260 ~~~~i~~~~~~~~~~~l~~~~~d~ 283 (289)
T cd00200 260 HTNSVTSLAWSPDGKRLASGSADG 283 (289)
T ss_pred cCCcEEEEEECCCCCEEEEecCCC
Confidence 556678899999998887765443
No 47
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.60 E-value=7.1e-13 Score=128.23 Aligned_cols=300 Identities=17% Similarity=0.139 Sum_probs=200.4
Q ss_pred ceEeeCCe-EEEEEecCCCceEEEEEecCCCcccccCCccceee------------CCCCCccccceeecCCcEEEEEEe
Q 039497 196 PTWSGDST-IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRV------------TPPGVHCFTPAAFHDGKRLAVATR 262 (642)
Q Consensus 196 ~~wspdg~-~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~SpdG~~l~~~~~ 262 (642)
.+|.|-.. +|.+. ..+-...+|.+...... ...++ .+....+..++|+.||..|++...
T Consensus 184 ~~WnP~~~~llasg-~~~s~ari~~l~e~~~~-------~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 184 CAWNPLRDGLLASG-SGDSTARIWNLLENSNI-------GSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred EecCchhhhhhhcc-CCccceeeeeehhhccc-------cchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 49999875 66555 44555677776542211 11100 111235778999999999999544
Q ss_pred ccCCceeeEEEEEe-------ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCcee-EEeeeCCCc
Q 039497 263 RKNRNFRHIEIYDL-------TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKEL-RMLRLNGSF 334 (642)
Q Consensus 263 ~~~~~~~~i~~~d~-------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 334 (642)
...+++|+. ...+.+.+....|+.+|.+|+....++. .++|- ...+...+. ++.....-.
T Consensus 256 -----~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~t------tilwd-~~~g~~~q~f~~~s~~~lD 323 (524)
T KOG0273|consen 256 -----DGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGT------TILWD-AHTGTVKQQFEFHSAPALD 323 (524)
T ss_pred -----CcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCcc------EEEEe-ccCceEEEeeeeccCCccc
Confidence 348999998 2356677888899999999988755554 33332 222222111 111112233
Q ss_pred cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeE--EeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWT--LIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412 (642)
Q Consensus 335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~--l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (642)
..|-.+.+++.. .....|+++.+....+.. .-+.+.+..+.|.|.|..|+.++. +.+++||.+..
T Consensus 324 VdW~~~~~F~ts----~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd-------D~TlkiWs~~~-- 390 (524)
T KOG0273|consen 324 VDWQSNDEFATS----STDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD-------DGTLKIWSMGQ-- 390 (524)
T ss_pred eEEecCceEeec----CCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC-------CCeeEeeecCC--
Confidence 566554442222 334556666665544332 223678999999999998888874 89999999865
Q ss_pred CCCCCCCCCccccceEEccccCCCCccCcEECCCCC---------eEEEEeCCCCceeEEEEECCCCccccceeeCCCCC
Q 039497 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGK---------FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP 483 (642)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~---------~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~ 483 (642)
++ ....|..+. ..+..+.|||+|. .|+.++ .+..|.+||+..|.. +..++.+.
T Consensus 391 ------~~-----~~~~l~~Hs-kei~t~~wsp~g~v~~n~~~~~~l~sas---~dstV~lwdv~~gv~---i~~f~kH~ 452 (524)
T KOG0273|consen 391 ------SN-----SVHDLQAHS-KEIYTIKWSPTGPVTSNPNMNLMLASAS---FDSTVKLWDVESGVP---IHTLMKHQ 452 (524)
T ss_pred ------Cc-----chhhhhhhc-cceeeEeecCCCCccCCCcCCceEEEee---cCCeEEEEEccCCce---eEeeccCC
Confidence 33 455565555 6677788998764 344444 234789999999987 78888998
Q ss_pred CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 484 WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 484 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
..+..++|||+|++|++.+.++. |.+|+...++..+-... .+ .+..+.|+.+|.+|.....++
T Consensus 453 ~pVysvafS~~g~ylAsGs~dg~--------V~iws~~~~~l~~s~~~--~~-------~Ifel~Wn~~G~kl~~~~sd~ 515 (524)
T KOG0273|consen 453 EPVYSVAFSPNGRYLASGSLDGC--------VHIWSTKTGKLVKSYQG--TG-------GIFELCWNAAGDKLGACASDG 515 (524)
T ss_pred CceEEEEecCCCcEEEecCCCCe--------eEeccccchheeEeecC--CC-------eEEEEEEcCCCCEEEEEecCC
Confidence 89999999999999999988765 89999888776554332 22 467899999999998887765
No 48
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.60 E-value=1.1e-13 Score=127.76 Aligned_cols=341 Identities=14% Similarity=0.117 Sum_probs=190.3
Q ss_pred CceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeec--CCCcceEeeCCeEEEEEecCCCceEEEEEe
Q 039497 144 SPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCE--RGGWPTWSGDSTIYFHRQADDGWWSIFRVS 221 (642)
Q Consensus 144 ~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--~~~~~~wspdg~~~~~~~~~~g~~~l~~~~ 221 (642)
...|||+|+|||.... ..+.+.|..+-+..++..- .-....|+.|...+......++..++|.+.
T Consensus 13 ~c~fSp~g~yiAs~~~-------------yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~ 79 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSR-------------YRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLV 79 (447)
T ss_pred ceeECCCCCeeeeeee-------------eEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEee
Confidence 3689999999998753 3577787777665555432 223579999995444443567766676653
Q ss_pred cCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEe
Q 039497 222 FPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRF 301 (642)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~ 301 (642)
... --..+...........|||||+.|+..+. -...|.+|.+.+.. .++.
T Consensus 80 Qpe---------w~ckIdeg~agls~~~WSPdgrhiL~tse----F~lriTVWSL~t~~---------------~~~~-- 129 (447)
T KOG4497|consen 80 QPE---------WYCKIDEGQAGLSSISWSPDGRHILLTSE----FDLRITVWSLNTQK---------------GYLL-- 129 (447)
T ss_pred cce---------eEEEeccCCCcceeeeECCCcceEeeeec----ceeEEEEEEeccce---------------eEEe--
Confidence 211 12344444446777889999998887542 23355666552211 1111
Q ss_pred ecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-----cCCce
Q 039497 302 RGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-----DRTAF 376 (642)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-----~~~~~ 376 (642)
.-.+ ......+|+|||++.+....++-+.-+-+ ...+...+.. .....
T Consensus 130 --------------~~pK----------~~~kg~~f~~dg~f~ai~sRrDCkdyv~i---~~c~~W~ll~~f~~dT~Dlt 182 (447)
T KOG4497|consen 130 --------------PHPK----------TNVKGYAFHPDGQFCAILSRRDCKDYVQI---SSCKAWILLKEFKLDTIDLT 182 (447)
T ss_pred --------------cccc----------cCceeEEECCCCceeeeeecccHHHHHHH---HhhHHHHHHHhcCCCccccc
Confidence 0000 11124488999998888766432221111 1111111111 22355
Q ss_pred eeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCC
Q 039497 377 YNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR 456 (642)
Q Consensus 377 ~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~ 456 (642)
.+.|||||..|++..+. -...++...- + -.+....|||.++.|+..+.+
T Consensus 183 gieWsPdg~~laVwd~~-------Leykv~aYe~---------~---------------lG~k~v~wsP~~qflavGsyD 231 (447)
T KOG4497|consen 183 GIEWSPDGNWLAVWDNV-------LEYKVYAYER---------G---------------LGLKFVEWSPCNQFLAVGSYD 231 (447)
T ss_pred CceECCCCcEEEEecch-------hhheeeeeee---------c---------------cceeEEEeccccceEEeeccc
Confidence 78899999999887642 1222222211 0 011223444444444433321
Q ss_pred ------------------------CCc-------------------------e--eEE-----EEECCC-Cccc---cce
Q 039497 457 ------------------------SGH-------------------------K--NLF-----VLDAVN-GEFN---GDI 476 (642)
Q Consensus 457 ------------------------~g~-------------------------~--~l~-----~~d~~~-g~~~---~~~ 476 (642)
+-. . .++ ++.... -... +++
T Consensus 232 ~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~ 311 (447)
T KOG4497|consen 232 QMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPP 311 (447)
T ss_pred hhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCC
Confidence 100 0 000 000000 0000 001
Q ss_pred eeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEE
Q 039497 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556 (642)
Q Consensus 477 ~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l 556 (642)
+...+....+..++||+|..+++...+. .++.||+||+...+...+....+ ++....|.|.-.+|
T Consensus 312 tD~pnPk~g~g~lafs~Ds~y~aTrnd~------~PnalW~Wdlq~l~l~avLiQk~---------piraf~WdP~~prL 376 (447)
T KOG4497|consen 312 TDFPNPKCGAGKLAFSCDSTYAATRNDK------YPNALWLWDLQNLKLHAVLIQKH---------PIRAFEWDPGRPRL 376 (447)
T ss_pred CCCCCcccccceeeecCCceEEeeecCC------CCceEEEEechhhhhhhhhhhcc---------ceeEEEeCCCCceE
Confidence 1111222344567999999877665543 56789999998766544432221 45778999999999
Q ss_pred EEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEee
Q 039497 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~ 617 (642)
++..... +||.|.+.+.....+...+..+.++.|.-+|..++-.
T Consensus 377 ~vctg~s-----------------rLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~ 420 (447)
T KOG4497|consen 377 VVCTGKS-----------------RLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLC 420 (447)
T ss_pred EEEcCCc-----------------eEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEE
Confidence 8876542 8999999997777777777788899999999876544
No 49
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=3.3e-13 Score=124.20 Aligned_cols=279 Identities=15% Similarity=0.105 Sum_probs=172.0
Q ss_pred eeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEee------------cCCCCcccCCeecCCCCEEEEEEeecC
Q 039497 237 RVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT------------LNPNFHHYNPFVSANSEFIGYHRFRGE 304 (642)
Q Consensus 237 ~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~------------~~~~~~~~~~~~spDg~~l~~~~~~~~ 304 (642)
.|..++..+..++||.|||+|+.+..++ .|++|++. .-.........|+||-+.+++...++.
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr-----~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDR-----SIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCc-----eEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCC
Confidence 3455666788899999999999987665 89999992 112234556789999998888766544
Q ss_pred CCCCCcccce-Eeec-cCCCceeEEeeeC-----------CCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee
Q 039497 305 STEGQSTIPH-LEPV-ASPVKELRMLRLN-----------GSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK 371 (642)
Q Consensus 305 ~~~~~~~~~~-~~~~-~~~~~~~~~~~~~-----------~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~ 371 (642)
. ...+ +... ++. -.+...... ...+.....+++|+..+. ...|.+|++.|.....+..
T Consensus 156 ~-----l~vyk~~K~~dG~-~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~---dt~i~lw~lkGq~L~~idt 226 (420)
T KOG2096|consen 156 K-----LCVYKLVKKTDGS-GSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASL---DTKICLWDLKGQLLQSIDT 226 (420)
T ss_pred E-----EEEEEeeecccCC-CCcccccccccccchhcccceEEEeecCCceEEEEecC---CCcEEEEecCCceeeeecc
Confidence 2 1111 1111 111 111111111 012233445555555443 4678888998655444443
Q ss_pred -cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeE
Q 039497 372 -DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFL 450 (642)
Q Consensus 372 -~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l 450 (642)
.......+.||||++|+.+.. ...+.+|.+-..++|+. +.......|..+. ..+..++|||+.+++
T Consensus 227 nq~~n~~aavSP~GRFia~~gF-------TpDVkVwE~~f~kdG~f-----qev~rvf~LkGH~-saV~~~aFsn~S~r~ 293 (420)
T KOG2096|consen 227 NQSSNYDAAVSPDGRFIAVSGF-------TPDVKVWEPIFTKDGTF-----QEVKRVFSLKGHQ-SAVLAAAFSNSSTRA 293 (420)
T ss_pred ccccccceeeCCCCcEEEEecC-------CCCceEEEEEeccCcch-----hhhhhhheeccch-hheeeeeeCCCccee
Confidence 334567899999999998875 56788898877444221 1111334445554 567778999999998
Q ss_pred EEEeCCCCceeEEEEECC--CCccccceeeCCC-------CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC
Q 039497 451 VFRSGRSGHKNLFVLDAV--NGEFNGDIRQLTD-------GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD 521 (642)
Q Consensus 451 ~~~~~~~g~~~l~~~d~~--~g~~~~~~~~l~~-------~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~ 521 (642)
+..+ ++|.+.||-.|+. .++- ++.|.. .....-.+..||.|+.|+...... |.++...
T Consensus 294 vtvS-kDG~wriwdtdVrY~~~qD---pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~---------l~~~~se 360 (420)
T KOG2096|consen 294 VTVS-KDGKWRIWDTDVRYEAGQD---PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSD---------LKVFASE 360 (420)
T ss_pred EEEe-cCCcEEEeeccceEecCCC---chHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCc---------eEEEEcc
Confidence 8766 5688888766653 2222 122221 122333568999999998887665 7777766
Q ss_pred CCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497 522 GSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL 562 (642)
Q Consensus 522 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~ 562 (642)
.++...-...-+.. .+..++|++||++++....+
T Consensus 361 ~g~~~~~~e~~h~~-------~Is~is~~~~g~~~atcGdr 394 (420)
T KOG2096|consen 361 DGKDYPELEDIHST-------TISSISYSSDGKYIATCGDR 394 (420)
T ss_pred cCccchhHHHhhcC-------ceeeEEecCCCcEEeeecce
Confidence 65543322222333 46789999999999877654
No 50
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.59 E-value=6.5e-12 Score=127.51 Aligned_cols=194 Identities=11% Similarity=0.073 Sum_probs=111.3
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCC-CCe-eEEe--e-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEE
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDG-SKR-WTLI--K-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV 408 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~-~~~-~~l~--~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~ 408 (642)
++.++|+|++|+..... ...|.+++++. +.. ..+. . ......+.++|||+++++... ..+.+.+|++
T Consensus 84 ~i~~~~~g~~l~v~~~~--~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~------~~~~v~v~d~ 155 (330)
T PRK11028 84 HISTDHQGRFLFSASYN--ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL------KEDRIRLFTL 155 (330)
T ss_pred EEEECCCCCEEEEEEcC--CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC------CCCEEEEEEE
Confidence 56889999988776543 45666676653 211 1111 1 234567789999999988774 4778899988
Q ss_pred EeecCCCCCCCCCcccc--ceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC--CCccccceeeCCCCC-
Q 039497 409 SFQLDPSDDNNREEIPC--DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV--NGEFNGDIRQLTDGP- 483 (642)
Q Consensus 409 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~--~g~~~~~~~~l~~~~- 483 (642)
+. + +.-... ....+..+ ....+++|+|||++++......+ .|.+|+++ +++. .....+...+
T Consensus 156 ~~--~------g~l~~~~~~~~~~~~g--~~p~~~~~~pdg~~lyv~~~~~~--~v~v~~~~~~~~~~-~~~~~~~~~p~ 222 (330)
T PRK11028 156 SD--D------GHLVAQEPAEVTTVEG--AGPRHMVFHPNQQYAYCVNELNS--SVDVWQLKDPHGEI-ECVQTLDMMPA 222 (330)
T ss_pred CC--C------CcccccCCCceecCCC--CCCceEEECCCCCEEEEEecCCC--EEEEEEEeCCCCCE-EEEEEEecCCC
Confidence 65 2 210000 01111122 24567899999999988765444 66666665 3442 0012221111
Q ss_pred -----CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC--CCceEEeeecCCCCCCCcccccccceEEcCCCCEE
Q 039497 484 -----WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD--GSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556 (642)
Q Consensus 484 -----~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l 556 (642)
.....+.++|||++||...... ..|.+++++ ++..+.+....... .+..+.|+|||++|
T Consensus 223 ~~~~~~~~~~i~~~pdg~~lyv~~~~~-------~~I~v~~i~~~~~~~~~~~~~~~~~-------~p~~~~~~~dg~~l 288 (330)
T PRK11028 223 DFSDTRWAADIHITPDGRHLYACDRTA-------SLISVFSVSEDGSVLSFEGHQPTET-------QPRGFNIDHSGKYL 288 (330)
T ss_pred cCCCCccceeEEECCCCCEEEEecCCC-------CeEEEEEEeCCCCeEEEeEEEeccc-------cCCceEECCCCCEE
Confidence 1122467999999888764322 236666664 33333222211111 34678999999999
Q ss_pred EEEEec
Q 039497 557 LFTANL 562 (642)
Q Consensus 557 ~~~~~~ 562 (642)
+.+...
T Consensus 289 ~va~~~ 294 (330)
T PRK11028 289 IAAGQK 294 (330)
T ss_pred EEEEcc
Confidence 887643
No 51
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.59 E-value=9.1e-14 Score=132.02 Aligned_cols=277 Identities=15% Similarity=0.165 Sum_probs=174.1
Q ss_pred CceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee----cCC--CcceEeeCCe
Q 039497 130 SKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC----ERG--GWPTWSGDST 203 (642)
Q Consensus 130 ~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~----~~~--~~~~wspdg~ 203 (642)
.+..-|..+........||++|||||.++.+. ..-||.+..... .++.. ... ....||||.+
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~----------Taiiw~v~~d~~--~kl~~tlvgh~~~V~yi~wSPDdr 282 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDS----------TAIIWIVVYDVH--FKLKKTLVGHSQPVSYIMWSPDDR 282 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCc----------eEEEEEEecCcc--eeeeeeeecccCceEEEEECCCCC
Confidence 34445566666667899999999999887655 333444333332 22222 112 2469999997
Q ss_pred EEEEEecCCCceEEEEEecCCCcccccCCccceeeCCC--CCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCC
Q 039497 204 IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPP--GVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPN 281 (642)
Q Consensus 204 ~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~ 281 (642)
.+++- +.+. .++++|..+| .....-+. +..+.+.+|-|||.+++. |+....+..||+
T Consensus 283 yLlaC-g~~e--~~~lwDv~tg--------d~~~~y~~~~~~S~~sc~W~pDg~~~V~-----Gs~dr~i~~wdl----- 341 (519)
T KOG0293|consen 283 YLLAC-GFDE--VLSLWDVDTG--------DLRHLYPSGLGFSVSSCAWCPDGFRFVT-----GSPDRTIIMWDL----- 341 (519)
T ss_pred eEEec-CchH--heeeccCCcc--------hhhhhcccCcCCCcceeEEccCCceeEe-----cCCCCcEEEecC-----
Confidence 55554 2233 4888888888 33333322 567888899999999888 444557776665
Q ss_pred CcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEEC
Q 039497 282 FHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKS 361 (642)
Q Consensus 282 ~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~ 361 (642)
||..+.- |... ..+. + ..+++++||++++.+.. ...|.+++.
T Consensus 342 ----------Dgn~~~~---------------W~gv---r~~~--v-----~dlait~Dgk~vl~v~~---d~~i~l~~~ 383 (519)
T KOG0293|consen 342 ----------DGNILGN---------------WEGV---RDPK--V-----HDLAITYDGKYVLLVTV---DKKIRLYNR 383 (519)
T ss_pred ----------Ccchhhc---------------cccc---ccce--e-----EEEEEcCCCcEEEEEec---ccceeeech
Confidence 3321100 1000 0001 1 24578999999888653 478889998
Q ss_pred CCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCcc-
Q 039497 362 DGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNA- 439 (642)
Q Consensus 362 ~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 439 (642)
+....+.+.. ...+.++..|.||+.+++-- ....+++|++.. . . .+++...+. ....
T Consensus 384 e~~~dr~lise~~~its~~iS~d~k~~LvnL-------~~qei~LWDl~e--~------~-----lv~kY~Ghk-q~~fi 442 (519)
T KOG0293|consen 384 EARVDRGLISEEQPITSFSISKDGKLALVNL-------QDQEIHLWDLEE--N------K-----LVRKYFGHK-QGHFI 442 (519)
T ss_pred hhhhhhccccccCceeEEEEcCCCcEEEEEc-------ccCeeEEeecch--h------h-----HHHHhhccc-ccceE
Confidence 8877664544 77889999999998666543 378999999964 1 1 333333332 1111
Q ss_pred -CcEECC-CCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecC
Q 039497 440 -FPSCSP-DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504 (642)
Q Consensus 440 -~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~ 504 (642)
.-.|-- |.++|+-.+ .+.+||+|+..+|+. +..|+.+...++.++|+|.....+..+.+
T Consensus 443 IrSCFgg~~~~fiaSGS---ED~kvyIWhr~sgkl---l~~LsGHs~~vNcVswNP~~p~m~ASasD 503 (519)
T KOG0293|consen 443 IRSCFGGGNDKFIASGS---EDSKVYIWHRISGKL---LAVLSGHSKTVNCVSWNPADPEMFASASD 503 (519)
T ss_pred EEeccCCCCcceEEecC---CCceEEEEEccCCce---eEeecCCcceeeEEecCCCCHHHhhccCC
Confidence 112221 334444333 345899999999998 88899998899999999977665444443
No 52
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=1.8e-11 Score=115.89 Aligned_cols=284 Identities=15% Similarity=0.152 Sum_probs=179.7
Q ss_pred ceEEEEccCCceE--ecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC-----
Q 039497 121 ALYSTDLKASKFT--RLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG----- 193 (642)
Q Consensus 121 ~l~~~~~~~~~~~--~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~----- 193 (642)
..|.++.++|+.. ++..........+|+|++++|..+.... ..++...|.+|..+|....+.....
T Consensus 19 ~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~-------~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p 91 (346)
T COG2706 19 YVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPG-------EEGGVAAYRIDPDDGRLTFLNRQTLPGSPP 91 (346)
T ss_pred EEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecC-------CcCcEEEEEEcCCCCeEEEeeccccCCCCC
Confidence 3444444455443 3334455567789999999998765542 1245556666666687776665322
Q ss_pred CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCC----------ccccceeecCCcEEEEEEec
Q 039497 194 GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGV----------HCFTPAAFHDGKRLAVATRR 263 (642)
Q Consensus 194 ~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~SpdG~~l~~~~~~ 263 (642)
..++.+++|+++|+++-..|...++.+..++... ...++..+.. .+....++|||++|+.+.--
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~------~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG 165 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQ------PVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG 165 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccc------cceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC
Confidence 2348889999999987777877888776664311 1212211111 14456689999988885432
Q ss_pred cCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEe-eeCCCccEEcCCCC
Q 039497 264 KNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRML-RLNGSFPSFSPDGG 342 (642)
Q Consensus 264 ~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~spdg~ 342 (642)
...+.+|++.. |+.-.. . +.... ....+++.|+|+|+
T Consensus 166 ----~Dri~~y~~~d--------------g~L~~~-------------~-----------~~~v~~G~GPRHi~FHpn~k 203 (346)
T COG2706 166 ----TDRIFLYDLDD--------------GKLTPA-------------D-----------PAEVKPGAGPRHIVFHPNGK 203 (346)
T ss_pred ----CceEEEEEccc--------------Cccccc-------------c-----------ccccCCCCCcceEEEcCCCc
Confidence 23677777631 110000 0 00011 12235779999999
Q ss_pred EEEEEecCCCceeEEEEECCCCCeeEEee----------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497 343 LIVFNHDFELNAGIKIAKSDGSKRWTLIK----------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412 (642)
Q Consensus 343 ~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (642)
.++.+.+-++...+|.++...++...+.. ......+..+|||++|+.+.++ ...+.++.++.
T Consensus 204 ~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg------~dsI~~f~V~~-- 275 (346)
T COG2706 204 YAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRG------HDSIAVFSVDP-- 275 (346)
T ss_pred EEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCC------CCeEEEEEEcC--
Confidence 76667666667777888877676655543 2345678999999999887753 56777888876
Q ss_pred CCCCCCCCCccccceEEc--cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC
Q 039497 413 DPSDDNNREEIPCDVKIL--TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD 481 (642)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~ 481 (642)
+ ++ +...+ ...+......+.++|+|++|+.+..++..-.+|..|.++|+. ..+..
T Consensus 276 ~-----~g-----~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L----~~~~~ 332 (346)
T COG2706 276 D-----GG-----KLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRL----TLLGR 332 (346)
T ss_pred C-----CC-----EEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceE----Eeccc
Confidence 3 33 22222 222213477899999999999998888888999999999984 66554
No 53
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.58 E-value=4.4e-14 Score=134.11 Aligned_cols=268 Identities=16% Similarity=0.116 Sum_probs=171.7
Q ss_pred eeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEe-----------ecCCCCcccCCeecCCCCEEEEEEeecC
Q 039497 236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL-----------TLNPNFHHYNPFVSANSEFIGYHRFRGE 304 (642)
Q Consensus 236 ~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~-----------~~~~~~~~~~~~~spDg~~l~~~~~~~~ 304 (642)
..+..+..++....||++|++||.++.+. +.-+|++ ..++...+....||||.++|+.+..+..
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~-----Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~ 292 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDS-----TAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV 292 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCc-----eEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence 34455666788899999999999965443 3444444 3455566677899999999988754433
Q ss_pred CCCCCcccceEeeccCCCceeEEe---eeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEE--eecCCceeee
Q 039497 305 STEGQSTIPHLEPVASPVKELRML---RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTL--IKDRTAFYNS 379 (642)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l--~~~~~~~~~~ 379 (642)
. ++.++.......... .+.....+|.|||.+++..+. ..++..+++++.....- .....+.+++
T Consensus 293 ------~--~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~---dr~i~~wdlDgn~~~~W~gvr~~~v~dla 361 (519)
T KOG0293|consen 293 ------L--SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSP---DRTIIMWDLDGNILGNWEGVRDPKVHDLA 361 (519)
T ss_pred ------e--eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCC---CCcEEEecCCcchhhcccccccceeEEEE
Confidence 2 333332221111111 122345689999999777543 47899999998763211 1145688999
Q ss_pred eecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCc
Q 039497 380 WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGH 459 (642)
Q Consensus 380 ~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~ 459 (642)
.++||++++.+.. +..+.++.... . ..+.+.... ..+..+..|.||++++..- ..
T Consensus 362 it~Dgk~vl~v~~-------d~~i~l~~~e~--~------------~dr~lise~-~~its~~iS~d~k~~LvnL---~~ 416 (519)
T KOG0293|consen 362 ITYDGKYVLLVTV-------DKKIRLYNREA--R------------VDRGLISEE-QPITSFSISKDGKLALVNL---QD 416 (519)
T ss_pred EcCCCcEEEEEec-------ccceeeechhh--h------------hhhcccccc-CceeEEEEcCCCcEEEEEc---cc
Confidence 9999999998873 67888888765 1 222233333 5778899999999877654 33
Q ss_pred eeEEEEECCCCccccceeeCCCCCC---cccceeEe-cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCC
Q 039497 460 KNLFVLDAVNGEFNGDIRQLTDGPW---IDTMPSWS-PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEG 535 (642)
Q Consensus 460 ~~l~~~d~~~g~~~~~~~~l~~~~~---~~~~~~~s-pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 535 (642)
.+|++||++..+. +++...+.. .+.+ .|- -|.++|+-.+.+. .||+|+..++++-.... ++..
T Consensus 417 qei~LWDl~e~~l---v~kY~Ghkq~~fiIrS-CFgg~~~~fiaSGSED~--------kvyIWhr~sgkll~~Ls-GHs~ 483 (519)
T KOG0293|consen 417 QEIHLWDLEENKL---VRKYFGHKQGHFIIRS-CFGGGNDKFIASGSEDS--------KVYIWHRISGKLLAVLS-GHSK 483 (519)
T ss_pred CeeEEeecchhhH---HHHhhcccccceEEEe-ccCCCCcceEEecCCCc--------eEEEEEccCCceeEeec-CCcc
Confidence 4899999985443 233222221 1111 232 2334454444443 49999999888765554 5555
Q ss_pred CCCcccccccceEEcCCCCEEEEEEecCC
Q 039497 536 SGDVDRERINHVCFSADGEWLLFTANLGA 564 (642)
Q Consensus 536 ~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~ 564 (642)
.+..++|+|-...++..+.+.+
T Consensus 484 -------~vNcVswNP~~p~m~ASasDDg 505 (519)
T KOG0293|consen 484 -------TVNCVSWNPADPEMFASASDDG 505 (519)
T ss_pred -------eeeEEecCCCCHHHhhccCCCC
Confidence 5778999998888777766654
No 54
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.57 E-value=1.2e-12 Score=118.60 Aligned_cols=272 Identities=17% Similarity=0.151 Sum_probs=168.6
Q ss_pred ccccceeecCCcEEEEEEeccCCceeeEEEEEe-------------ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCc
Q 039497 244 HCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL-------------TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQS 310 (642)
Q Consensus 244 ~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~-------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~ 310 (642)
.+...+..+.+..+++...+ ...+.+|++ ..++.-.+.....|+||...+....++.
T Consensus 17 ~Vt~la~~~~~~~~l~sasr----Dk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~------ 86 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASR----DKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT------ 86 (315)
T ss_pred eEEEEEeecCCCceEEEccc----ceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce------
Confidence 44444444444444443322 225556666 2344555678899999998777655544
Q ss_pred ccceEeeccCCCceeEEeee--CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeeecCCC
Q 039497 311 TIPHLEPVASPVKELRMLRL--NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEK 385 (642)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~ 385 (642)
..+ .++.......++... .....++|+|.++|+..+. ...|-+++..+.-...+.. ..-+..+.|+|+..
T Consensus 87 lrl--WDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSr---DkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 87 LRL--WDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSR---DKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNES 161 (315)
T ss_pred EEE--EEecCCcEEEEEEecCCceEEEEecCCCceeecCCC---cceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCC
Confidence 233 333333222222211 2245789999999988544 4678888988876666654 34588999999964
Q ss_pred EEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEE
Q 039497 386 HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVL 465 (642)
Q Consensus 386 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~ 465 (642)
..++++. ..+..+++|++.. .+ ....+..+. +.+..+++||||...+... + ..++++|
T Consensus 162 ~p~Ivs~-----s~DktvKvWnl~~----------~~---l~~~~~gh~-~~v~t~~vSpDGslcasGg-k--dg~~~Lw 219 (315)
T KOG0279|consen 162 NPIIVSA-----SWDKTVKVWNLRN----------CQ---LRTTFIGHS-GYVNTVTVSPDGSLCASGG-K--DGEAMLW 219 (315)
T ss_pred CcEEEEc-----cCCceEEEEccCC----------cc---hhhcccccc-ccEEEEEECCCCCEEecCC-C--CceEEEE
Confidence 4444443 3588999999965 11 223333444 7788899999998877633 3 3489999
Q ss_pred ECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE-EeeecCCCCCCCcccccc
Q 039497 466 DAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR-RIHVAGPEGSGDVDRERI 544 (642)
Q Consensus 466 d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~ 544 (642)
|+..++. +..+.. ...+..++|+|+--+|..+.... |.+||++++... .+................
T Consensus 220 dL~~~k~---lysl~a-~~~v~sl~fspnrywL~~at~~s---------IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~c 286 (315)
T KOG0279|consen 220 DLNEGKN---LYSLEA-FDIVNSLCFSPNRYWLCAATATS---------IKIWDLESKAVVEELKLDGIGPSSKAGDPIC 286 (315)
T ss_pred EccCCce---eEeccC-CCeEeeEEecCCceeEeeccCCc---------eEEEeccchhhhhhccccccccccccCCcEE
Confidence 9998875 555544 35678899999865555444332 999999887542 222111100000111245
Q ss_pred cceEEcCCCCEEEEEEecCCc
Q 039497 545 NHVCFSADGEWLLFTANLGAV 565 (642)
Q Consensus 545 ~~~~~S~Dg~~l~~~~~~~~~ 565 (642)
..++||+||..|+....++..
T Consensus 287 lslaws~dG~tLf~g~td~~i 307 (315)
T KOG0279|consen 287 LSLAWSADGQTLFAGYTDNVI 307 (315)
T ss_pred EEEEEcCCCcEEEeeecCCcE
Confidence 678999999999988877643
No 55
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=5.3e-12 Score=124.63 Aligned_cols=335 Identities=12% Similarity=0.103 Sum_probs=200.6
Q ss_pred cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCC----ceeEeecCCCcceEeeCCeEEEEEecC------
Q 039497 142 DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPN----KRVIVCERGGWPTWSGDSTIYFHRQAD------ 211 (642)
Q Consensus 142 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~l~~~~~~~~~wspdg~~~~~~~~~------ 211 (642)
+...+|||-|.||+..-..+ |-+| +|+ .++..++......|||..+.|++-+..
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-------------I~lW---GG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~ 276 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-------------IALW---GGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEE 276 (698)
T ss_pred eeeEEecCCceEEEEEeccc-------------eeee---cCccHHHHHhccCCCceeeecCCccceEEEecCCccccCc
Confidence 46689999999999553322 2233 443 233334444567899998777664211
Q ss_pred --CCceEEEEEecCCCcccccCCccceeeCCC-CCccc--cceeecCCcEEEEEEeccC--CceeeEEEEEeecCCCCcc
Q 039497 212 --DGWWSIFRVSFPENLEFLGFPIAPTRVTPP-GVHCF--TPAAFHDGKRLAVATRRKN--RNFRHIEIYDLTLNPNFHH 284 (642)
Q Consensus 212 --~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~--~~~~SpdG~~l~~~~~~~~--~~~~~i~~~d~~~~~~~~~ 284 (642)
+...+|..||+.+|. ....+... +.... .+.||.|+|++|-...+.- -....+.++|...-....+
T Consensus 277 ~d~e~~~l~IWDI~tG~-------lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gI 349 (698)
T KOG2314|consen 277 DDNEGQQLIIWDIATGL-------LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGI 349 (698)
T ss_pred ccCCCceEEEEEccccc-------hhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccc
Confidence 123589999999983 22222221 21222 2457999999886544210 0011234444455667788
Q ss_pred cCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCC--CceeEEeeeCCCccEEcCCCCEEEEEecCCCc-------ee
Q 039497 285 YNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASP--VKELRMLRLNGSFPSFSPDGGLIVFNHDFELN-------AG 355 (642)
Q Consensus 285 ~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~-------~~ 355 (642)
.++.|||-+..|||....... ......+..+... .+...+.......+.|-..|++|++-.++..+ .+
T Consensus 350 r~FswsP~~~llAYwtpe~~~---~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n 426 (698)
T KOG2314|consen 350 RDFSWSPTSNLLAYWTPETNN---IPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSN 426 (698)
T ss_pred cCcccCCCcceEEEEcccccC---CcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEee
Confidence 999999999999997644331 1222233333222 22223334455678899999999995543221 22
Q ss_pred EEEEECCCCCe--eEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcccc
Q 039497 356 IKIAKSDGSKR--WTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE 433 (642)
Q Consensus 356 l~~~d~~~~~~--~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 433 (642)
+-++.+..... ..+.....+..++|-|.|+++++.+.. ....++.+|.+.. + .. +.+.+..-
T Consensus 427 ~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~----~~k~tvsfY~~e~--~-----~~-----~~~lVk~~ 490 (698)
T KOG2314|consen 427 LEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGN----TVKNTVSFYAVET--N-----IK-----KPSLVKEL 490 (698)
T ss_pred EEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcc----ccccceeEEEeec--C-----CC-----chhhhhhh
Confidence 33333333332 222226778899999999999988754 4577889999985 2 22 34433333
Q ss_pred CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccceeEecCCCEEEEEecCCCCCCCCc
Q 039497 434 ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA 512 (642)
Q Consensus 434 ~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~ 512 (642)
.......+.|||.|++++.+........|+.+|++-... +.... .........|.|.|+++...+...... -.
T Consensus 491 dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~----k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk--~d 564 (698)
T KOG2314|consen 491 DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADL----KDTASPEHFAATEVEWDPTGRYVVTSSSSWRHK--VD 564 (698)
T ss_pred cccccceEEEcCCCcEEEEEEecccccceEEEecchhhh----hhccCccccccccceECCCCCEEEEeeehhhhc--cc
Confidence 324566799999999999988765566888888873231 22221 112446789999999998877654211 22
Q ss_pred eeEEEEeCCCCc
Q 039497 513 FSLYVIKPDGSG 524 (642)
Q Consensus 513 ~~l~~~d~~~~~ 524 (642)
..-.++++.|..
T Consensus 565 ~GYri~tfqGrl 576 (698)
T KOG2314|consen 565 NGYRIFTFQGRL 576 (698)
T ss_pred cceEEEEeecHH
Confidence 334556665543
No 56
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.56 E-value=6e-12 Score=118.21 Aligned_cols=278 Identities=15% Similarity=0.122 Sum_probs=174.3
Q ss_pred ceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecC-C--CcceEeeCCeEEEE
Q 039497 131 KFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCER-G--GWPTWSGDSTIYFH 207 (642)
Q Consensus 131 ~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~--~~~~wspdg~~~~~ 207 (642)
.+-.|+.+........||.||.+||.....+ .|.++...+|..+...... . .|..|.|-+.+++.
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG------------~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illA 165 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSG------------KVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLA 165 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCc------------cEEEEEcccCceEEEeecccCceEEEEecccccEEEe
Confidence 4567788888888899999999999876555 7999999998877666532 2 48899998888888
Q ss_pred EecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCC
Q 039497 208 RQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNP 287 (642)
Q Consensus 208 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 287 (642)
. ..+| .+|.+.+..+. ..+.+.++...+....|.||||+|+....++ .|.+|++.++...
T Consensus 166 G-~~DG--svWmw~ip~~~-------~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg-----ti~~Wn~ktg~p~----- 225 (399)
T KOG0296|consen 166 G-STDG--SVWMWQIPSQA-------LCKVMSGHNSPCTCGEFIPDGKRILTGYDDG-----TIIVWNPKTGQPL----- 225 (399)
T ss_pred e-cCCC--cEEEEECCCcc-------eeeEecCCCCCcccccccCCCceEEEEecCc-----eEEEEecCCCcee-----
Confidence 8 5678 77888777642 4556677777888889999999998865544 8899988554311
Q ss_pred eecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCee
Q 039497 288 FVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW 367 (642)
Q Consensus 288 ~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~ 367 (642)
.-. +... .+... ...++.++.. ++.. +.....+..+..+++..
T Consensus 226 ---------~~~-------------------~~~e-~~~~~-----~~~~~~~~~~-~~~g--~~e~~~~~~~~~sgKVv 268 (399)
T KOG0296|consen 226 ---------HKI-------------------TQAE-GLELP-----CISLNLAGST-LTKG--NSEGVACGVNNGSGKVV 268 (399)
T ss_pred ---------EEe-------------------cccc-cCcCC-----ccccccccce-eEec--cCCccEEEEccccceEE
Confidence 000 0000 00000 0111222211 1111 00111222222222111
Q ss_pred --------EEee--cCCceeeeeec---CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC
Q 039497 368 --------TLIK--DRTAFYNSWSP---TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE 434 (642)
Q Consensus 368 --------~l~~--~~~~~~~~~sp---dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 434 (642)
.+.. .....++.++| +=...+.. .-++++.||++.. . +.+.+-.++
T Consensus 269 ~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G-------~vdG~i~iyD~a~--~------------~~R~~c~he 327 (399)
T KOG0296|consen 269 NCNNGTVPELKPSQEELDESVESIPSSSKLPLAACG-------SVDGTIAIYDLAA--S------------TLRHICEHE 327 (399)
T ss_pred EecCCCCccccccchhhhhhhhhcccccccchhhcc-------cccceEEEEeccc--c------------hhheeccCC
Confidence 1111 22233444444 33322332 2478999999866 2 556666665
Q ss_pred CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCC
Q 039497 435 TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHN 506 (642)
Q Consensus 435 ~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~ 506 (642)
..+..+.|-+ -.+|+... -+ ..|+.||..+|+. ....+.+...+..++++|++++++..+.++.
T Consensus 328 -~~V~~l~w~~-t~~l~t~c-~~--g~v~~wDaRtG~l---~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~ 391 (399)
T KOG0296|consen 328 -DGVTKLKWLN-TDYLLTAC-AN--GKVRQWDARTGQL---KFTYTGHQMGILDFALSPQKRLVVTVSDDNT 391 (399)
T ss_pred -CceEEEEEcC-cchheeec-cC--ceEEeeeccccce---EEEEecCchheeEEEEcCCCcEEEEecCCCe
Confidence 5677889987 45555444 33 3899999999997 5667777778888999999999888887754
No 57
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.56 E-value=8.6e-13 Score=127.66 Aligned_cols=264 Identities=17% Similarity=0.172 Sum_probs=170.6
Q ss_pred cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEE
Q 039497 195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIY 274 (642)
Q Consensus 195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~ 274 (642)
.++|+.||.++++. ..+|...|| +..+. ....+-.+...++.+.|+.+|.+|+....++ .+-+|
T Consensus 240 ~L~Wn~~G~~LatG-~~~G~~riw--~~~G~--------l~~tl~~HkgPI~slKWnk~G~yilS~~vD~-----ttilw 303 (524)
T KOG0273|consen 240 SLDWNNDGTLLATG-SEDGEARIW--NKDGN--------LISTLGQHKGPIFSLKWNKKGTYILSGGVDG-----TTILW 303 (524)
T ss_pred eEEecCCCCeEEEe-ecCcEEEEE--ecCch--------hhhhhhccCCceEEEEEcCCCCEEEeccCCc-----cEEEE
Confidence 46999999999988 567855555 55565 5566777777899999999999999855444 88899
Q ss_pred EeecCC--------CCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeecc--CCCceeEEeeeCCCccEEcCCCCEE
Q 039497 275 DLTLNP--------NFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVA--SPVKELRMLRLNGSFPSFSPDGGLI 344 (642)
Q Consensus 275 d~~~~~--------~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~spdg~~l 344 (642)
|...+. .....+..|-.+.+. +.. ..+ ..+.+..+. .+..+..-.......+.|.|.|..|
T Consensus 304 d~~~g~~~q~f~~~s~~~lDVdW~~~~~F-~ts--~td------~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LL 374 (524)
T KOG0273|consen 304 DAHTGTVKQQFEFHSAPALDVDWQSNDEF-ATS--STD------GCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLL 374 (524)
T ss_pred eccCceEEEeeeeccCCccceEEecCceE-eec--CCC------ceEEEEEecCCCcceeeecccCceEEEEECCCCceE
Confidence 983221 111122334333221 111 111 011222222 2322222212223567899999988
Q ss_pred EEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCC---------EEEEEEcCCCcccCCCeEEEEEEEeecCCC
Q 039497 345 VFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEK---------HVIYTSTGPIFQSERATVQIARVSFQLDPS 415 (642)
Q Consensus 345 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~---------~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 415 (642)
+..++ ++.-.||-+.-.+.....-.+...+..+.|||+|. .|+.++. +..+.+|++..
T Consensus 375 aS~Sd-D~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~-------dstV~lwdv~~----- 441 (524)
T KOG0273|consen 375 ASCSD-DGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF-------DSTVKLWDVES----- 441 (524)
T ss_pred EEecC-CCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec-------CCeEEEEEccC-----
Confidence 77765 55555554433322211112256678888888765 3444442 78999999976
Q ss_pred CCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCC
Q 039497 416 DDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495 (642)
Q Consensus 416 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG 495 (642)
+- ....+..+. ..++.++|||||+++++.+.. ..|.+|+.++++. .+-..+...+..+.|+.+|
T Consensus 442 ---gv-----~i~~f~kH~-~pVysvafS~~g~ylAsGs~d---g~V~iws~~~~~l----~~s~~~~~~Ifel~Wn~~G 505 (524)
T KOG0273|consen 442 ---GV-----PIHTLMKHQ-EPVYSVAFSPNGRYLASGSLD---GCVHIWSTKTGKL----VKSYQGTGGIFELCWNAAG 505 (524)
T ss_pred ---Cc-----eeEeeccCC-CceEEEEecCCCcEEEecCCC---CeeEeccccchhe----eEeecCCCeEEEEEEcCCC
Confidence 33 566677777 789999999999999987643 3799999999985 5544455667889999999
Q ss_pred CEEEEEecCCCCCCCCceeEEEEeC
Q 039497 496 DLIAFSSNRHNPDNVEAFSLYVIKP 520 (642)
Q Consensus 496 ~~l~~~~~~~~~~~~~~~~l~~~d~ 520 (642)
++|.....++. ++++|+
T Consensus 506 ~kl~~~~sd~~--------vcvldl 522 (524)
T KOG0273|consen 506 DKLGACASDGS--------VCVLDL 522 (524)
T ss_pred CEEEEEecCCC--------ceEEEe
Confidence 99888877664 777776
No 58
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.55 E-value=1.8e-11 Score=124.34 Aligned_cols=220 Identities=16% Similarity=0.255 Sum_probs=131.0
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCC-CCeeEE---ee------------cCCceeeeeecCCCEEEEEEcCCCcc
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDG-SKRWTL---IK------------DRTAFYNSWSPTEKHVIYTSTGPIFQ 397 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~-~~~~~l---~~------------~~~~~~~~~spdg~~l~~~~~~~~~~ 397 (642)
++.++|||++|+......+. |.+++++. +..... .. ....+.+.++|||++|+....
T Consensus 91 ~i~~~~~g~~l~vany~~g~--v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl----- 163 (345)
T PF10282_consen 91 HIAVDPDGRFLYVANYGGGS--VSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL----- 163 (345)
T ss_dssp EEEECTTSSEEEEEETTTTE--EEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-----
T ss_pred EEEEecCCCEEEEEEccCCe--EEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-----
Confidence 55789999988887765444 55555543 332222 11 234668899999999988875
Q ss_pred cCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcccccee
Q 039497 398 SERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR 477 (642)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~ 477 (642)
+...+.+|+++. . ..++. ....+.........++.|+|||++++......+.-.++.++..+|+. ..+.
T Consensus 164 -G~D~v~~~~~~~--~------~~~l~-~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~-~~~~ 232 (345)
T PF10282_consen 164 -GADRVYVYDIDD--D------TGKLT-PVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL-TEIQ 232 (345)
T ss_dssp -TTTEEEEEEE-T--T------S-TEE-EEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE-EEEE
T ss_pred -CCCEEEEEEEeC--C------CceEE-EeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce-eEEE
Confidence 367888888866 2 21111 11222222224567899999999999888766655555555446653 1111
Q ss_pred eCCCC------CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcC
Q 039497 478 QLTDG------PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSA 551 (642)
Q Consensus 478 ~l~~~------~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~ 551 (642)
.+... ......+.+||||++||++.... +...+|.+|..+++++.+......+ ..+..+.++|
T Consensus 233 ~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~-----~sI~vf~~d~~~g~l~~~~~~~~~G------~~Pr~~~~s~ 301 (345)
T PF10282_consen 233 TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS-----NSISVFDLDPATGTLTLVQTVPTGG------KFPRHFAFSP 301 (345)
T ss_dssp EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT-----TEEEEEEECTTTTTEEEEEEEEESS------SSEEEEEE-T
T ss_pred EeeeccccccccCCceeEEEecCCCEEEEEeccC-----CEEEEEEEecCCCceEEEEEEeCCC------CCccEEEEeC
Confidence 12111 11345678999999888877654 3333444444566776654432222 1467899999
Q ss_pred CCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc
Q 039497 552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596 (642)
Q Consensus 552 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt 596 (642)
||++|+++....+.. .+|.+|.++|.++.+.
T Consensus 302 ~g~~l~Va~~~s~~v--------------~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 302 DGRYLYVANQDSNTV--------------SVFDIDPDTGKLTPVG 332 (345)
T ss_dssp TSSEEEEEETTTTEE--------------EEEEEETTTTEEEEEE
T ss_pred CCCEEEEEecCCCeE--------------EEEEEeCCCCcEEEec
Confidence 999998877665432 5666677787776554
No 59
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.55 E-value=1.8e-13 Score=140.68 Aligned_cols=268 Identities=14% Similarity=0.111 Sum_probs=179.1
Q ss_pred cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCCcceEeeCCeEEEEEecCCCceEEEEEe
Q 039497 142 DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVS 221 (642)
Q Consensus 142 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~wspdg~~~~~~~~~~g~~~l~~~~ 221 (642)
..++.||+|++.||-.-. ...|++|.+...+.+++... .|...-.. ..++ ..+-..|
T Consensus 381 v~ca~fSddssmlA~Gf~------------dS~i~~~Sl~p~kl~~lk~~-----~~l~~~d~-----~sad-~~~~~~D 437 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGFV------------DSSVRVWSLTPKKLKKLKDA-----SDLSNIDT-----ESAD-VDVDMLD 437 (707)
T ss_pred ceeEeecCCcchhhcccc------------ccEEEEEecchhhhccccch-----hhhccccc-----cccc-hhhhhcc
Confidence 466889999998884433 33788888877666666431 11110000 0000 0122223
Q ss_pred cCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEe
Q 039497 222 FPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRF 301 (642)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~ 301 (642)
...+. ..+.+.++...++...|+||.++|+.++.+. .+++|.+.+..
T Consensus 438 ~~~~~-------~~~~L~GH~GPVyg~sFsPd~rfLlScSED~-----svRLWsl~t~s--------------------- 484 (707)
T KOG0263|consen 438 DDSSG-------TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDS-----SVRLWSLDTWS--------------------- 484 (707)
T ss_pred ccCCc-------eeEEeecCCCceeeeeecccccceeeccCCc-----ceeeeecccce---------------------
Confidence 33221 4456888877899999999999999866544 78888873321
Q ss_pred ecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeee
Q 039497 302 RGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNS 379 (642)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~ 379 (642)
.++..++...+ .....|+|-|-++|..+. +....||..|- ....++.. ...+..+.
T Consensus 485 ------------~~V~y~GH~~P-------VwdV~F~P~GyYFatas~-D~tArLWs~d~--~~PlRifaghlsDV~cv~ 542 (707)
T KOG0263|consen 485 ------------CLVIYKGHLAP-------VWDVQFAPRGYYFATASH-DQTARLWSTDH--NKPLRIFAGHLSDVDCVS 542 (707)
T ss_pred ------------eEEEecCCCcc-------eeeEEecCCceEEEecCC-Cceeeeeeccc--CCchhhhcccccccceEE
Confidence 01111111111 123468888866555533 55667776664 33333322 56678899
Q ss_pred eecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCc
Q 039497 380 WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGH 459 (642)
Q Consensus 380 ~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~ 459 (642)
|.|+..+++..+. +..+++|++.. |. ..+.++.+. ..+..++|||+|++|+..+. .
T Consensus 543 FHPNs~Y~aTGSs-------D~tVRlWDv~~--------G~-----~VRiF~GH~-~~V~al~~Sp~Gr~LaSg~e---d 598 (707)
T KOG0263|consen 543 FHPNSNYVATGSS-------DRTVRLWDVST--------GN-----SVRIFTGHK-GPVTALAFSPCGRYLASGDE---D 598 (707)
T ss_pred ECCcccccccCCC-------CceEEEEEcCC--------Cc-----EEEEecCCC-CceEEEEEcCCCceEeeccc---C
Confidence 9999999987753 78999999977 44 566666666 88999999999999987663 3
Q ss_pred eeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497 460 KNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG 522 (642)
Q Consensus 460 ~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~ 522 (642)
..|.+||+.+|+. +.++..+.+.+.++.||.||..|+..+.+.. |.+||+..
T Consensus 599 ~~I~iWDl~~~~~---v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns--------V~lWD~~~ 650 (707)
T KOG0263|consen 599 GLIKIWDLANGSL---VKQLKGHTGTIYSLSFSRDGNVLASGGADNS--------VRLWDLTK 650 (707)
T ss_pred CcEEEEEcCCCcc---hhhhhcccCceeEEEEecCCCEEEecCCCCe--------EEEEEchh
Confidence 4799999999887 7777778888899999999999888887654 88888753
No 60
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.54 E-value=4.4e-12 Score=113.89 Aligned_cols=275 Identities=15% Similarity=0.169 Sum_probs=173.9
Q ss_pred eeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCcccccccc--CCCEEEEEEeccCCCc
Q 039497 37 HRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA--RNNKLFFISAHEQPDQ 114 (642)
Q Consensus 37 ~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~ 114 (642)
+.+-.+.+.....+|. -||.+||- +.-++...+|.++.+... ..+.--.+...-+...+ ...-++++...+.
T Consensus 14 r~~~~~~~~v~Sv~wn-~~g~~las-gs~dktv~v~n~e~~r~~-~~~~~~gh~~svdql~w~~~~~d~~atas~dk--- 87 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWN-CDGTKLAS-GSFDKTVSVWNLERDRFR-KELVYRGHTDSVDQLCWDPKHPDLFATASGDK--- 87 (313)
T ss_pred HHhhhhhhcceEEEEc-ccCceeee-cccCCceEEEEecchhhh-hhhcccCCCcchhhheeCCCCCcceEEecCCc---
Confidence 4455677788888999 99999994 444778889988444211 00000000001112223 1222333333331
Q ss_pred ccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee--cC
Q 039497 115 IFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC--ER 192 (642)
Q Consensus 115 ~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~--~~ 192 (642)
.|-+.+...++.+.-+..........|||||+++++...+. .|-.++...-+...-.. ..
T Consensus 88 ------~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD------------~it~id~r~~~~~~~~~~~~e 149 (313)
T KOG1407|consen 88 ------TIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDD------------RITFIDARTYKIVNEEQFKFE 149 (313)
T ss_pred ------eEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcc------------cEEEEEecccceeehhcccce
Confidence 34444778888777666666667789999999999987555 56666665443222111 11
Q ss_pred CCcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEE
Q 039497 193 GGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIE 272 (642)
Q Consensus 193 ~~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~ 272 (642)
.....|..++.++|..+ ..|..+|..+..-. ....+..+......+.|+|+||++|. |++..-+-
T Consensus 150 ~ne~~w~~~nd~Fflt~-GlG~v~ILsypsLk---------pv~si~AH~snCicI~f~p~GryfA~-----GsADAlvS 214 (313)
T KOG1407|consen 150 VNEISWNNSNDLFFLTN-GLGCVEILSYPSLK---------PVQSIKAHPSNCICIEFDPDGRYFAT-----GSADALVS 214 (313)
T ss_pred eeeeeecCCCCEEEEec-CCceEEEEeccccc---------cccccccCCcceEEEEECCCCceEee-----ccccceee
Confidence 23568988878888873 35777888776322 34556666667778899999999999 55666888
Q ss_pred EEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCC
Q 039497 273 IYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFEL 352 (642)
Q Consensus 273 ~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 352 (642)
|||+.. |+..+ .+.+++.+ .+.++||.||++||..++
T Consensus 215 LWD~~E-----------------LiC~R-------------~isRldwp----------VRTlSFS~dg~~lASaSE--- 251 (313)
T KOG1407|consen 215 LWDVDE-----------------LICER-------------CISRLDWP----------VRTLSFSHDGRMLASASE--- 251 (313)
T ss_pred ccChhH-----------------hhhhe-------------eeccccCc----------eEEEEeccCcceeeccCc---
Confidence 888721 22221 12222333 234589999999988664
Q ss_pred ceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcC
Q 039497 353 NAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTG 393 (642)
Q Consensus 353 ~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~ 393 (642)
..-|-+.++++|....-.. .+....++|.|....|+|+...
T Consensus 252 Dh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 252 DHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecC
Confidence 3567778888776544333 7888999999999999999864
No 61
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.53 E-value=6.9e-12 Score=127.40 Aligned_cols=295 Identities=19% Similarity=0.225 Sum_probs=163.5
Q ss_pred eeEEEEEe--cCCCceeEee-cCC---CcceEeeCCeEEEEEec---CCCceEEEEEecCCCcccccCCccceee---CC
Q 039497 173 TDIVVFQE--SDPNKRVIVC-ERG---GWPTWSGDSTIYFHRQA---DDGWWSIFRVSFPENLEFLGFPIAPTRV---TP 240 (642)
Q Consensus 173 ~~l~~~~~--~~g~~~~l~~-~~~---~~~~wspdg~~~~~~~~---~~g~~~l~~~~~~~~~~~~~~~~~~~~l---~~ 240 (642)
..|+++.+ ++++...+.. ... .+++++|+++++|+... ..|....|.++.+++ ..+.+ ..
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g--------~L~~~~~~~~ 84 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG--------TLTLLNSVPS 84 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT--------EEEEEEEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc--------eeEEeeeecc
Confidence 35666555 6666554443 122 46788999987777644 456677788877744 33332 22
Q ss_pred CCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeecc-
Q 039497 241 PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVA- 319 (642)
Q Consensus 241 ~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~- 319 (642)
.+....+++++|||++|+++.-..+ .+.++++. .+|+...... .....
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g----~v~v~~l~-------------~~g~l~~~~~--------------~~~~~g 133 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGG----SVSVFPLD-------------DDGSLGEVVQ--------------TVRHEG 133 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTT----EEEEEEEC-------------TTSEEEEEEE--------------EEESEE
T ss_pred CCCCcEEEEEecCCCEEEEEEccCC----eEEEEEcc-------------CCcccceeee--------------ecccCC
Confidence 3334456788999998888654333 56666652 2222111100 00000
Q ss_pred -CCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCC--eeEEe---e--cCCceeeeeecCCCEEEEEE
Q 039497 320 -SPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK--RWTLI---K--DRTAFYNSWSPTEKHVIYTS 391 (642)
Q Consensus 320 -~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~--~~~l~---~--~~~~~~~~~spdg~~l~~~~ 391 (642)
+.... ...........++|||++++... .+...|++++++... ..... . .....++.|+|||+++|++.
T Consensus 134 ~g~~~~-rq~~~h~H~v~~~pdg~~v~v~d--lG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~ 210 (345)
T PF10282_consen 134 SGPNPD-RQEGPHPHQVVFSPDGRFVYVPD--LGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN 210 (345)
T ss_dssp EESSTT-TTSSTCEEEEEE-TTSSEEEEEE--TTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEE
T ss_pred CCCccc-ccccccceeEEECCCCCEEEEEe--cCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEec
Confidence 00000 00000012457899999887655 345677777776544 33211 1 56688999999999998887
Q ss_pred cCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcccc---CC--CCccCcEECCCCCeEEEEeCCCCceeEEEEE
Q 039497 392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE---ET--GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLD 466 (642)
Q Consensus 392 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~--~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d 466 (642)
. ..+.+.++.++. . .+ .+. ....+... .. .....+.+||||++|+.+....+.-.+|.+|
T Consensus 211 e------~s~~v~v~~~~~--~-----~g-~~~-~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 211 E------LSNTVSVFDYDP--S-----DG-SLT-EIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp T------TTTEEEEEEEET--T-----TT-EEE-EEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred C------CCCcEEEEeecc--c-----CC-cee-EEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 3 477888888873 1 12 000 11112111 10 1345689999999988776544433444444
Q ss_pred CCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497 467 AVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530 (642)
Q Consensus 467 ~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 530 (642)
..+|+. ..+..+.........+.++|||++|+.+.... +...+|.+|.++|.++.+..
T Consensus 276 ~~~g~l-~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s-----~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 276 PATGTL-TLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS-----NTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp TTTTTE-EEEEEEEESSSSEEEEEE-TTSSEEEEEETTT-----TEEEEEEEETTTTEEEEEEE
T ss_pred cCCCce-EEEEEEeCCCCCccEEEEeCCCCEEEEEecCC-----CeEEEEEEeCCCCcEEEecc
Confidence 456663 11222222222356789999999999988765 45667777878888776653
No 62
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.53 E-value=3e-11 Score=123.38 Aligned_cols=458 Identities=12% Similarity=0.028 Sum_probs=266.1
Q ss_pred CcceEEEEeecCCceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCC-eEEEEEccCCCcceEEEcCCCCcc
Q 039497 3 PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQ-TIAFISERSGSPRIYQTRPGSSKT 81 (642)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~-~laf~~~~~g~~~l~~~~~~g~~~ 81 (642)
|.+.++.+.+ ..+-+-++++.+ ..-.++|-+|++.+....|- |+=. .|.+.+..++...+|.......-.
T Consensus 115 ~~g~LlAtgg----aD~~v~VWdi~~----~~~th~fkG~gGvVssl~F~-~~~~~~lL~sg~~D~~v~vwnl~~~~tcl 185 (775)
T KOG0319|consen 115 PTGTLLATGG----ADGRVKVWDIKN----GYCTHSFKGHGGVVSSLLFH-PHWNRWLLASGATDGTVRVWNLNDKRTCL 185 (775)
T ss_pred CCCceEEecc----ccceEEEEEeeC----CEEEEEecCCCceEEEEEeC-CccchhheeecCCCceEEEEEcccCchHH
Confidence 4445555533 344555555555 14468999999999999999 8854 466677778888889873322100
Q ss_pred ----cccCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCc-eEecccCCCccCCceeCCC-----C
Q 039497 82 ----ELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASK-FTRLTPYGVVDYSPSVSYS-----G 151 (642)
Q Consensus 82 ----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~SPD-----G 151 (642)
.+.+....+ ...-++..++..+... .+++.++..-+ .+.++....- ....+-++ |
T Consensus 186 ~~~~~H~S~vtsL----~~~~d~~~~ls~~RDk----------vi~vwd~~~~~~l~~lp~ye~~-E~vv~l~~~~~~~~ 250 (775)
T KOG0319|consen 186 HTMILHKSAVTSL----AFSEDSLELLSVGRDK----------VIIVWDLVQYKKLKTLPLYESL-ESVVRLREELGGKG 250 (775)
T ss_pred HHHHhhhhheeee----eeccCCceEEEeccCc----------EEEEeehhhhhhhheechhhhe-eeEEEechhcCCcc
Confidence 011111111 1111455566555443 23444654332 2233322222 22333333 4
Q ss_pred cEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecC-C----CcceEeeCCeEEEEEecCCCceEEEEEecCCCc
Q 039497 152 KFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCER-G----GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENL 226 (642)
Q Consensus 152 ~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~----~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~ 226 (642)
.++..+...+ .+-.|+.++++........ . ....-...++++.+.. + .+|+.++.++..
T Consensus 251 ~~~~TaG~~g------------~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vta--e--Qnl~l~d~~~l~ 314 (775)
T KOG0319|consen 251 EYIITAGGSG------------VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTA--E--QNLFLYDEDELT 314 (775)
T ss_pred eEEEEecCCc------------eEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEc--c--ceEEEEEccccE
Confidence 4666665443 6778888888643332211 1 1123333445444442 2 377888777663
Q ss_pred ccccCCccceeeCCCCCcccccee-ecCCcEEEEEEeccCCceeeEEEEEee-------cCCCCcccCCeecCCCCEEEE
Q 039497 227 EFLGFPIAPTRVTPPGVHCFTPAA-FHDGKRLAVATRRKNRNFRHIEIYDLT-------LNPNFHHYNPFVSANSEFIGY 298 (642)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~~~~~~~-SpdG~~l~~~~~~~~~~~~~i~~~d~~-------~~~~~~~~~~~~spDg~~l~~ 298 (642)
...++.+-...+..+.| .|+-++|+++++.. .+++|++. .++...+.....+.+|-.|+.
T Consensus 315 -------i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~-----~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat 382 (775)
T KOG0319|consen 315 -------IVKQIVGYNDEILDMKFLGPEESHLAVATNSP-----ELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLAT 382 (775)
T ss_pred -------EehhhcCCchhheeeeecCCccceEEEEeCCC-----ceEEEecCCCceEEEeCchhheeeeeecccCcEEEE
Confidence 34455554445666665 77888999977655 78888872 233333333443345544444
Q ss_pred EEeecCCCCCCcccceEeeccCCCceeEEe-----eeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCC--CeeEE--
Q 039497 299 HRFRGESTEGQSTIPHLEPVASPVKELRML-----RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGS--KRWTL-- 369 (642)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~--~~~~l-- 369 (642)
.+.+.. .++|..+-+.. ...-.. .......+++..+-.++.....+..-.+|.+..+.. ....+
T Consensus 383 ~sKD~s------vilWr~~~~~~-~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~ 455 (775)
T KOG0319|consen 383 GSKDKS------VILWRLNNNCS-KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTC 455 (775)
T ss_pred ecCCce------EEEEEecCCcc-hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehh
Confidence 433322 45554421111 110000 111134455555543333332233444454443111 11111
Q ss_pred -----eecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEEC
Q 039497 370 -----IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCS 444 (642)
Q Consensus 370 -----~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~S 444 (642)
.++..+..++++|+.+.|+..+. +....||+++. .+ -.-.|..+. ..++.+.|+
T Consensus 456 ~~t~~aHdKdIN~Vaia~ndkLiAT~Sq-------DktaKiW~le~--------~~-----l~~vLsGH~-RGvw~V~Fs 514 (775)
T KOG0319|consen 456 RYTERAHDKDINCVAIAPNDKLIATGSQ-------DKTAKIWDLEQ--------LR-----LLGVLSGHT-RGVWCVSFS 514 (775)
T ss_pred hHHHHhhcccccceEecCCCceEEeccc-------ccceeeecccC--------ce-----EEEEeeCCc-cceEEEEec
Confidence 11677999999999998888774 78899999975 33 556677777 889999999
Q ss_pred CCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc
Q 039497 445 PDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG 524 (642)
Q Consensus 445 pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~ 524 (642)
|..+.++..+ ++..|.+|.+++..- ++.+..+...+-...|-.+|+.|+-...++- |.+|++++++
T Consensus 515 ~~dq~laT~S---gD~TvKIW~is~fSC---lkT~eGH~~aVlra~F~~~~~qliS~~adGl--------iKlWnikt~e 580 (775)
T KOG0319|consen 515 KNDQLLATCS---GDKTVKIWSISTFSC---LKTFEGHTSAVLRASFIRNGKQLISAGADGL--------IKLWNIKTNE 580 (775)
T ss_pred cccceeEecc---CCceEEEEEecccee---eeeecCccceeEeeeeeeCCcEEEeccCCCc--------EEEEeccchh
Confidence 9988887776 566888889888887 7888888777888899999999988887764 8899998876
Q ss_pred eEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497 525 LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL 562 (642)
Q Consensus 525 ~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~ 562 (642)
...-. ..++. .++.+.-++++..++..+.+
T Consensus 581 C~~tl-D~H~D-------rvWaL~~~~~~~~~~tgg~D 610 (775)
T KOG0319|consen 581 CEMTL-DAHND-------RVWALSVSPLLDMFVTGGGD 610 (775)
T ss_pred hhhhh-hhccc-------eeEEEeecCccceeEecCCC
Confidence 65433 24444 67888888988855544444
No 63
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.52 E-value=4.8e-11 Score=109.02 Aligned_cols=270 Identities=16% Similarity=0.107 Sum_probs=180.8
Q ss_pred ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEE
Q 039497 196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD 275 (642)
Q Consensus 196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d 275 (642)
..|++|++.++++ ..+| .|..||.-+.. +...++-+...++.-++||.|+.++-..- .....+|+
T Consensus 61 ~~ws~Dsr~ivSa-SqDG--klIvWDs~Ttn-------K~haipl~s~WVMtCA~sPSg~~VAcGGL-----dN~Csiy~ 125 (343)
T KOG0286|consen 61 MDWSTDSRRIVSA-SQDG--KLIVWDSFTTN-------KVHAIPLPSSWVMTCAYSPSGNFVACGGL-----DNKCSIYP 125 (343)
T ss_pred eEecCCcCeEEee-ccCC--eEEEEEccccc-------ceeEEecCceeEEEEEECCCCCeEEecCc-----CceeEEEe
Confidence 5899999988887 5678 67777776653 45566666778888999999998888433 33556666
Q ss_pred eecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCC--CccEEcCCCCEEEEEecCCCc
Q 039497 276 LTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNG--SFPSFSPDGGLIVFNHDFELN 353 (642)
Q Consensus 276 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~spdg~~l~~~~~~~~~ 353 (642)
+...... | . .++. ++ +....+ ....|-+|+. |+.. .+.
T Consensus 126 ls~~d~~----------g----------~-----------~~v~---r~--l~gHtgylScC~f~dD~~-ilT~---SGD 165 (343)
T KOG0286|consen 126 LSTRDAE----------G----------N-----------VRVS---RE--LAGHTGYLSCCRFLDDNH-ILTG---SGD 165 (343)
T ss_pred ccccccc----------c----------c-----------ceee---ee--ecCccceeEEEEEcCCCc-eEec---CCC
Confidence 6321100 0 0 0000 00 111111 2335666665 4442 455
Q ss_pred eeEEEEECCCCCeeEEee--cCCceeeeeec-CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497 354 AGIKIAKSDGSKRWTLIK--DRTAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL 430 (642)
Q Consensus 354 ~~l~~~d~~~~~~~~l~~--~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 430 (642)
...-++|+++++..+... .+.+..+.++| +++.++-.. -+...+||++.. +. ..+.+
T Consensus 166 ~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~-------cD~~aklWD~R~--------~~-----c~qtF 225 (343)
T KOG0286|consen 166 MTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG-------CDKSAKLWDVRS--------GQ-----CVQTF 225 (343)
T ss_pred ceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc-------cccceeeeeccC--------cc-----eeEee
Confidence 778888999998777665 56788999999 888766554 377889999976 44 66777
Q ss_pred cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC--CCcccceeEecCCCEEEEEecCCCCC
Q 039497 431 TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG--PWIDTMPSWSPKGDLIAFSSNRHNPD 508 (642)
Q Consensus 431 ~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~--~~~~~~~~~spdG~~l~~~~~~~~~~ 508 (642)
..++ ..+..+.|-|+|..++..+++ ....++|+...+. +...... ...+.+++||..|++|+....+.+
T Consensus 226 ~ghe-sDINsv~ffP~G~afatGSDD---~tcRlyDlRaD~~---~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~-- 296 (343)
T KOG0286|consen 226 EGHE-SDINSVRFFPSGDAFATGSDD---ATCRLYDLRADQE---LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFT-- 296 (343)
T ss_pred cccc-cccceEEEccCCCeeeecCCC---ceeEEEeecCCcE---EeeeccCcccCCceeEEEcccccEEEeeecCCc--
Confidence 7777 788899999999887766532 3566778877664 2333222 234678899999997666555543
Q ss_pred CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 509 NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 509 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
+.+||.=.++..-+. .++++ ++..+..+|||.-|+..+-+.
T Consensus 297 ------c~vWDtlk~e~vg~L-~GHeN-------RvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 297 ------CNVWDTLKGERVGVL-AGHEN-------RVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred ------eeEeeccccceEEEe-eccCC-------eeEEEEECCCCcEEEecchhH
Confidence 899997544444333 36776 789999999999887776553
No 64
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.52 E-value=8.6e-11 Score=119.31 Aligned_cols=277 Identities=12% Similarity=0.090 Sum_probs=151.8
Q ss_pred ceEEEEcc-CCceEecc--cCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEec-CCCceeEee-cCC--
Q 039497 121 ALYSTDLK-ASKFTRLT--PYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQES-DPNKRVIVC-ERG-- 193 (642)
Q Consensus 121 ~l~~~~~~-~~~~~~lt--~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~l~~-~~~-- 193 (642)
.|..+++. +++.+.+. .........++||||++|+..... ...|.+|++. +++...+.. ...
T Consensus 13 ~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~-----------~~~i~~~~~~~~g~l~~~~~~~~~~~ 81 (330)
T PRK11028 13 QIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRP-----------EFRVLSYRIADDGALTFAAESPLPGS 81 (330)
T ss_pred CEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECC-----------CCcEEEEEECCCCceEEeeeecCCCC
Confidence 45555654 34433332 222344567899999998766432 2357777776 344332221 112
Q ss_pred -CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEE
Q 039497 194 -GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIE 272 (642)
Q Consensus 194 -~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~ 272 (642)
...+++|||+.+|+....++...+|.++.++... ...............+++|||++++++.... ..|.
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~------~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~----~~v~ 151 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPV------APIQIIEGLEGCHSANIDPDNRTLWVPCLKE----DRIR 151 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC------CceeeccCCCcccEeEeCCCCCEEEEeeCCC----CEEE
Confidence 2458899998888775556756666665333210 1111111222345567899999887755432 3788
Q ss_pred EEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCC
Q 039497 273 IYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFEL 352 (642)
Q Consensus 273 ~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 352 (642)
+||+........ . ........ .......+.|+|||++++.....
T Consensus 152 v~d~~~~g~l~~-------------------~-------~~~~~~~~--------~g~~p~~~~~~pdg~~lyv~~~~-- 195 (330)
T PRK11028 152 LFTLSDDGHLVA-------------------Q-------EPAEVTTV--------EGAGPRHMVFHPNQQYAYCVNEL-- 195 (330)
T ss_pred EEEECCCCcccc-------------------c-------CCCceecC--------CCCCCceEEECCCCCEEEEEecC--
Confidence 888732110000 0 00000000 00112356899999987776543
Q ss_pred ceeEEEEECC--CCCeeEEee----cC------CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCC
Q 039497 353 NAGIKIAKSD--GSKRWTLIK----DR------TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR 420 (642)
Q Consensus 353 ~~~l~~~d~~--~~~~~~l~~----~~------~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 420 (642)
...|.+++++ +++.+.+.. .. ....+.++|||++|+.... ..+.+.+|+++. + ++
T Consensus 196 ~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~------~~~~I~v~~i~~--~-----~~ 262 (330)
T PRK11028 196 NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR------TASLISVFSVSE--D-----GS 262 (330)
T ss_pred CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC------CCCeEEEEEEeC--C-----CC
Confidence 4566666665 334322211 11 1224779999998888753 367888888866 3 11
Q ss_pred CccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCc
Q 039497 421 EEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471 (642)
Q Consensus 421 ~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~ 471 (642)
.+. ....+... .....+.++|||++|+.+...++.-.||.++..+|.
T Consensus 263 -~~~-~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~ 309 (330)
T PRK11028 263 -VLS-FEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGL 309 (330)
T ss_pred -eEE-EeEEEecc--ccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCc
Confidence 000 11111111 244578999999999988765666667777766666
No 65
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=2.7e-12 Score=124.00 Aligned_cols=284 Identities=14% Similarity=0.132 Sum_probs=181.9
Q ss_pred cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCc-EEEEEEeccCCceeeEEE
Q 039497 195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGK-RLAVATRRKNRNFRHIEI 273 (642)
Q Consensus 195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~-~l~~~~~~~~~~~~~i~~ 273 (642)
.+.|.|...++.+. +-++..+||.+|-+... ..+.+--.++.+....|.|+|+ .+++..+++ -++.
T Consensus 218 sv~FHp~~plllva-G~d~~lrifqvDGk~N~-------~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrk-----y~ys 284 (514)
T KOG2055|consen 218 SVQFHPTAPLLLVA-GLDGTLRIFQVDGKVNP-------KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRK-----YLYS 284 (514)
T ss_pred EEEecCCCceEEEe-cCCCcEEEEEecCccCh-------hheeeeeccCccceeeecCCCceEEEecccce-----EEEE
Confidence 46899998888888 77899999999866542 3333333466777889999999 555544443 7888
Q ss_pred EEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCc
Q 039497 274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN 353 (642)
Q Consensus 274 ~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 353 (642)
||++....... .++.+-. ......+..|||+++|++... .
T Consensus 285 yDle~ak~~k~-------------------------------~~~~g~e------~~~~e~FeVShd~~fia~~G~---~ 324 (514)
T KOG2055|consen 285 YDLETAKVTKL-------------------------------KPPYGVE------EKSMERFEVSHDSNFIAIAGN---N 324 (514)
T ss_pred eeccccccccc-------------------------------cCCCCcc------cchhheeEecCCCCeEEEccc---C
Confidence 99854331111 1111100 111234578999999999643 4
Q ss_pred eeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc
Q 039497 354 AGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK 432 (642)
Q Consensus 354 ~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 432 (642)
+.|+++...+++...-.. .+.+..+.|+.||+.|+.+. +.+.+.+|++.. . . ...+...
T Consensus 325 G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~-------~~GeV~v~nl~~--~------~-----~~~rf~D 384 (514)
T KOG2055|consen 325 GHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASG-------GTGEVYVWNLRQ--N------S-----CLHRFVD 384 (514)
T ss_pred ceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEc-------CCceEEEEecCC--c------c-----eEEEEee
Confidence 789999888887544333 78899999999999888775 366888888865 1 2 4455554
Q ss_pred cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC-CCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCC
Q 039497 433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV-NGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVE 511 (642)
Q Consensus 433 ~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~-~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~ 511 (642)
.....-.++..|++|++++..+. .|--+||-.+.. .+..+++++.+.+....+.+++|+||+..|+..+...
T Consensus 385 ~G~v~gts~~~S~ng~ylA~GS~-~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~------ 457 (514)
T KOG2055|consen 385 DGSVHGTSLCISLNGSYLATGSD-SGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK------ 457 (514)
T ss_pred cCccceeeeeecCCCceEEeccC-cceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc------
Confidence 43234456888999999887764 354455543321 1222234555666666788899999999998888753
Q ss_pred ceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 512 AFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 512 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
...|.++.+-+-. ... ++.. .+-.-..+..++|||.|.+|++....+
T Consensus 458 knalrLVHvPS~T--VFs--NfP~-~n~~vg~vtc~aFSP~sG~lAvGNe~g 504 (514)
T KOG2055|consen 458 KNALRLVHVPSCT--VFS--NFPT-SNTKVGHVTCMAFSPNSGYLAVGNEAG 504 (514)
T ss_pred ccceEEEecccee--eec--cCCC-CCCcccceEEEEecCCCceEEeecCCC
Confidence 3446666654311 111 1100 000011577899999999998876654
No 66
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.49 E-value=6.9e-12 Score=131.91 Aligned_cols=228 Identities=22% Similarity=0.221 Sum_probs=161.8
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEEC-CCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKS-DGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVS 409 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~-~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~ 409 (642)
....|||||+.++-.+. ...|+++++ +.+...+... ...+..+.|+|+|+.|+..+ .+..++||++.
T Consensus 207 ~~~~fs~d~~~l~s~s~---D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs-------~D~tvriWd~~ 276 (456)
T KOG0266|consen 207 SDVAFSPDGSYLLSGSD---DKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGS-------DDGTVRIWDVR 276 (456)
T ss_pred eeeEECCCCcEEEEecC---CceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEec-------CCCcEEEEecc
Confidence 45689999997766543 478888888 4434333333 56688999999997666665 38999999997
Q ss_pred eecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC--ccc
Q 039497 410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW--IDT 487 (642)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~--~~~ 487 (642)
. +. ..+.|..+. ..+..+.|++||+.|+..+. +..|.+||+.++... -...+..... .+.
T Consensus 277 ~--------~~-----~~~~l~~hs-~~is~~~f~~d~~~l~s~s~---d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~ 338 (456)
T KOG0266|consen 277 T--------GE-----CVRKLKGHS-DGISGLAFSPDGNLLVSASY---DGTIRVWDLETGSKL-CLKLLSGAENSAPVT 338 (456)
T ss_pred C--------Ce-----EEEeeeccC-CceEEEEECCCCCEEEEcCC---CccEEEEECCCCcee-eeecccCCCCCCcee
Confidence 6 23 667777776 78888999999999987753 348999999988820 0134443333 367
Q ss_pred ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA 567 (642)
Q Consensus 488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~ 567 (642)
...|+|+|++|+....+.. |.+||+..+....... .+.... .....+..+++|++++..+.+.
T Consensus 339 ~~~fsp~~~~ll~~~~d~~--------~~~w~l~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~i~sg~~d~---- 401 (456)
T KOG0266|consen 339 SVQFSPNGKYLLSASLDRT--------LKLWDLRSGKSVGTYT-GHSNLV----RCIFSPTLSTGGKLIYSGSEDG---- 401 (456)
T ss_pred EEEECCCCcEEEEecCCCe--------EEEEEccCCcceeeec-ccCCcc----eeEecccccCCCCeEEEEeCCc----
Confidence 7899999999998887754 8999998665543332 222100 0234556688999888777664
Q ss_pred CCCCCCCCCCCCCcEEEEEcCCCc-eeeccCC-CCCCCCcEEecCCceEEeec
Q 039497 568 EPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWN-GYENGTPAWHPGNQLDLGKL 618 (642)
Q Consensus 568 ~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~-~~~~~~~~~s~dg~~~~~~~ 618 (642)
.|+.|++.++. +.++..+ ...+..+.|+|...++++..
T Consensus 402 -------------~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 402 -------------SVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSS 441 (456)
T ss_pred -------------eEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecC
Confidence 78899988554 5666666 55667889999998887765
No 67
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.49 E-value=9e-12 Score=131.07 Aligned_cols=267 Identities=19% Similarity=0.184 Sum_probs=179.6
Q ss_pred CCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCC--ceeEeecCC---CcceEeeCCeEEEEEecCCCceEE
Q 039497 143 YSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPN--KRVIVCERG---GWPTWSGDSTIYFHRQADDGWWSI 217 (642)
Q Consensus 143 ~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~l~~~~~---~~~~wspdg~~~~~~~~~~g~~~l 217 (642)
....|||||++++....+. .+.+|...+.+ ..+....+. ....|+|||++++.. ..|.+..|
T Consensus 163 ~~~~fs~~g~~l~~~~~~~------------~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~-s~D~tiri 229 (456)
T KOG0266|consen 163 TCVDFSPDGRALAAASSDG------------LIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSG-SDDKTLRI 229 (456)
T ss_pred EEEEEcCCCCeEEEccCCC------------cEEEeecccccchhhccccccccceeeeEECCCCcEEEEe-cCCceEEE
Confidence 4468999999999886555 57777776665 222221111 245999999977776 56776666
Q ss_pred EEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEE
Q 039497 218 FRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIG 297 (642)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~ 297 (642)
|.+ ...+. ..+.+..+...+...+|+|+|+.|+....+ ..+++||+....
T Consensus 230 wd~-~~~~~-------~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D-----~tvriWd~~~~~----------------- 279 (456)
T KOG0266|consen 230 WDL-KDDGR-------NLKTLKGHSTYVTSVAFSPDGNLLVSGSDD-----GTVRIWDVRTGE----------------- 279 (456)
T ss_pred eec-cCCCe-------EEEEecCCCCceEEEEecCCCCEEEEecCC-----CcEEEEeccCCe-----------------
Confidence 666 23332 556777887788999999999777774444 489999983311
Q ss_pred EEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCee---EEee--c
Q 039497 298 YHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW---TLIK--D 372 (642)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~---~l~~--~ 372 (642)
.. . .+...........|++||+.|+..+. .+.|.++|+.++... .+.. .
T Consensus 280 -------------~~---~-------~l~~hs~~is~~~f~~d~~~l~s~s~---d~~i~vwd~~~~~~~~~~~~~~~~~ 333 (456)
T KOG0266|consen 280 -------------CV---R-------KLKGHSDGISGLAFSPDGNLLVSASY---DGTIRVWDLETGSKLCLKLLSGAEN 333 (456)
T ss_pred -------------EE---E-------eeeccCCceEEEEECCCCCEEEEcCC---CccEEEEECCCCceeeeecccCCCC
Confidence 00 0 01111112234589999998887643 578899999998843 2222 2
Q ss_pred C-CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCC--CccCcEECCCCCe
Q 039497 373 R-TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETG--NNAFPSCSPDGKF 449 (642)
Q Consensus 373 ~-~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~SpDg~~ 449 (642)
. .+..+.|+|++++|+.... +..+.+|++.. +. .......+... ....+..+++|++
T Consensus 334 ~~~~~~~~fsp~~~~ll~~~~-------d~~~~~w~l~~--------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (456)
T KOG0266|consen 334 SAPVTSVQFSPNGKYLLSASL-------DRTLKLWDLRS--------GK-----SVGTYTGHSNLVRCIFSPTLSTGGKL 393 (456)
T ss_pred CCceeEEEECCCCcEEEEecC-------CCeEEEEEccC--------Cc-----ceeeecccCCcceeEecccccCCCCe
Confidence 2 4688999999999988863 67999999975 22 33444333311 3345566889998
Q ss_pred EEEEeCCCCceeEEEEECCCCccccceeeCCCC-CCcccceeEecCCCEEEEEecC
Q 039497 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-PWIDTMPSWSPKGDLIAFSSNR 504 (642)
Q Consensus 450 l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~-~~~~~~~~~spdG~~l~~~~~~ 504 (642)
++..+. +..|++|++.++.. +..+..+ ...+..+.|+|..+.++..+..
T Consensus 394 i~sg~~---d~~v~~~~~~s~~~---~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~ 443 (456)
T KOG0266|consen 394 IYSGSE---DGSVYVWDSSSGGI---LQRLEGHSKAAVSDLSSHPTENLIASSSFE 443 (456)
T ss_pred EEEEeC---CceEEEEeCCccch---hhhhcCCCCCceeccccCCCcCeeeecCcC
Confidence 887764 34899999998776 5666666 5566778999999988888744
No 68
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=9.9e-10 Score=111.51 Aligned_cols=470 Identities=13% Similarity=0.089 Sum_probs=241.5
Q ss_pred ecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCC--CcccccCCCCCCcccccccc-CCCEEEEEEeccCCCcc
Q 039497 39 LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGS--SKTELLPSIPCSLFHDRPVA-RNNKLFFISAHEQPDQI 115 (642)
Q Consensus 39 lt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g--~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 115 (642)
++-.++.....++| -+.++|| .++.+|..+||.....= +....++.... -...+| ++++|+-+.-.
T Consensus 21 ~d~~Ps~I~slA~s-~kS~~lA-vsRt~g~IEiwN~~~~w~~~~vi~g~~drs---IE~L~W~e~~RLFS~g~s------ 89 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYS-HKSNQLA-VSRTDGNIEIWNLSNNWFLEPVIHGPEDRS---IESLAWAEGGRLFSSGLS------ 89 (691)
T ss_pred EeeeccceEEEEEe-ccCCcee-eeccCCcEEEEccCCCceeeEEEecCCCCc---eeeEEEccCCeEEeecCC------
Confidence 33456666788899 8888899 67789999999973321 11111111111 113344 35555433322
Q ss_pred cccccceEEEEccCCceEe-cccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCcee--EeecC
Q 039497 116 FKSWSALYSTDLKASKFTR-LTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRV--IVCER 192 (642)
Q Consensus 116 ~~~~~~l~~~~~~~~~~~~-lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--l~~~~ 192 (642)
|.|--+|+-+++... +........+.+++|.++.++...+++ .++.+....++.+- +....
T Consensus 90 ----g~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddG------------vl~~~s~~p~~I~~~r~l~rq 153 (691)
T KOG2048|consen 90 ----GSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDG------------VLYDFSIGPDKITYKRSLMRQ 153 (691)
T ss_pred ----ceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCc------------eEEEEecCCceEEEEeecccc
Confidence 256666777766543 444444556788999999999886654 56666655544221 11111
Q ss_pred -CC--cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCC----CCccccceee----cCCcEEEEEE
Q 039497 193 -GG--WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPP----GVHCFTPAAF----HDGKRLAVAT 261 (642)
Q Consensus 193 -~~--~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~S----pdG~~l~~~~ 261 (642)
+. .+.|.|++..++.. ..||... .+|...+. ....++-. ......+.|| .|+. |+.
T Consensus 154 ~sRvLslsw~~~~~~i~~G-s~Dg~Ir--iwd~~~~~-------t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~s-- 220 (691)
T KOG2048|consen 154 KSRVLSLSWNPTGTKIAGG-SIDGVIR--IWDVKSGQ-------TLHIITMQLDRLSKREPTIVWSVLFLRDST-IAS-- 220 (691)
T ss_pred cceEEEEEecCCccEEEec-ccCceEE--EEEcCCCc-------eEEEeeecccccccCCceEEEEEEEeecCc-EEE--
Confidence 21 46999999877777 5677444 44555542 12211111 1111223332 3332 333
Q ss_pred eccCCceeeEEEEEeec--------CCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEe-----
Q 039497 262 RRKNRNFRHIEIYDLTL--------NPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRML----- 328 (642)
Q Consensus 262 ~~~~~~~~~i~~~d~~~--------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 328 (642)
+.....+.+||... .+...+...+..+++.+++....++.. ..+... ....+....
T Consensus 221 ---gDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~i------i~~~~~--~~~~~wv~~~~r~~ 289 (691)
T KOG2048|consen 221 ---GDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKI------IQYSLT--TNKSEWVINSRRDL 289 (691)
T ss_pred ---ecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCce------EEEEec--CCccceeeeccccC
Confidence 44556899999843 334455556666666666665444441 111111 110000000
Q ss_pred -eeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC---CCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEE
Q 039497 329 -RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG---SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQ 404 (642)
Q Consensus 329 -~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~---~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 404 (642)
....+..+..++ +.+.. .....|++..... ...++......-..+..+|.. +|+.... .....
T Consensus 290 h~hdvrs~av~~~---~l~sg--G~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~-~L~~~w~-------~h~v~ 356 (691)
T KOG2048|consen 290 HAHDVRSMAVIEN---ALISG--GRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPEN-RLLVLWK-------AHGVD 356 (691)
T ss_pred Ccccceeeeeecc---eEEec--ceeeEEEEccccccCchhhhccccccccceeecCccc-eEEEEec-------ccccc
Confidence 000011111211 11111 1112222222111 000110000011112223332 3333322 45566
Q ss_pred EEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC-
Q 039497 405 IARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP- 483 (642)
Q Consensus 405 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~- 483 (642)
+|.+.. .. ..|+.-....-.+...+...+...+.||||++|++..-. ...||.+....... ++.+...+
T Consensus 357 lwrlGS--~~---~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~--~~~iy~L~~~~~vk---~~~v~~~~~ 426 (691)
T KOG2048|consen 357 LWRLGS--VI---LQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS--RTKIYRLQPDPNVK---VINVDDVPL 426 (691)
T ss_pred ceeccC--cc---cccccChhhheeeecCCccceeeeccCCCCCEEEEeecc--ceEEEEeccCccee---EEEeccchh
Confidence 777644 10 011100002222322222567778999999999998753 34777777664221 23333222
Q ss_pred --CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEe
Q 039497 484 --WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN 561 (642)
Q Consensus 484 --~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~ 561 (642)
.......|+-|++.+++.+.+ ...|...++++...+.+....... .+..+..++.|+||++|+..+.
T Consensus 427 ~~~~a~~i~ftid~~k~~~~s~~-------~~~le~~el~~ps~kel~~~~~~~----~~~~I~~l~~SsdG~yiaa~~t 495 (691)
T KOG2048|consen 427 ALLDASAISFTIDKNKLFLVSKN-------IFSLEEFELETPSFKELKSIQSQA----KCPSISRLVVSSDGNYIAAIST 495 (691)
T ss_pred hhccceeeEEEecCceEEEEecc-------cceeEEEEecCcchhhhhcccccc----CCCcceeEEEcCCCCEEEEEec
Confidence 234567899999998888833 234888888776665554322221 1235778999999999999986
Q ss_pred cCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc-CCCCCCCCcEEecC
Q 039497 562 LGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT-WNGYENGTPAWHPG 610 (642)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt-~~~~~~~~~~~s~d 610 (642)
.+ .|++|++.+.+...|. .-+..++..+++|.
T Consensus 496 ~g-----------------~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~ 528 (691)
T KOG2048|consen 496 RG-----------------QIFVYNLETLESHLLKVRLNIDVTAAAFSPF 528 (691)
T ss_pred cc-----------------eEEEEEcccceeecchhccCcceeeeecccc
Confidence 54 8999999998866655 33345566677754
No 69
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.9e-10 Score=105.46 Aligned_cols=272 Identities=13% Similarity=0.180 Sum_probs=166.5
Q ss_pred cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEE
Q 039497 195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIY 274 (642)
Q Consensus 195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~ 274 (642)
.+.|+++|..+.+. ..+...+|| +...+. +...+....+.+..+.|......+...... ...+|+..
T Consensus 19 sl~fs~~G~~lits-s~dDsl~LY--d~~~g~-------~~~ti~skkyG~~~~~Fth~~~~~i~sStk---~d~tIryL 85 (311)
T KOG1446|consen 19 SLDFSDDGLLLITS-SEDDSLRLY--DSLSGK-------QVKTINSKKYGVDLACFTHHSNTVIHSSTK---EDDTIRYL 85 (311)
T ss_pred EEEecCCCCEEEEe-cCCCeEEEE--EcCCCc-------eeeEeecccccccEEEEecCCceEEEccCC---CCCceEEE
Confidence 46899999877775 445544554 555553 445555555556666665444445553331 12356655
Q ss_pred EeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCce
Q 039497 275 DLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA 354 (642)
Q Consensus 275 d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 354 (642)
++.. .++| ....+-...+ ..+..+|-++.++-.+ -..
T Consensus 86 sl~d--------------Nkyl-------------------RYF~GH~~~V-------~sL~~sP~~d~FlS~S---~D~ 122 (311)
T KOG1446|consen 86 SLHD--------------NKYL-------------------RYFPGHKKRV-------NSLSVSPKDDTFLSSS---LDK 122 (311)
T ss_pred Eeec--------------CceE-------------------EEcCCCCceE-------EEEEecCCCCeEEecc---cCC
Confidence 5522 1111 1111111111 1346788777554433 235
Q ss_pred eEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC
Q 039497 355 GIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE 434 (642)
Q Consensus 355 ~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 434 (642)
.|.+||+...+..-+........++|.|.|-.+|.... ...+.||++..- + .| |+..-.+....
T Consensus 123 tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~-------~~~IkLyD~Rs~-d-----kg---PF~tf~i~~~~ 186 (311)
T KOG1446|consen 123 TVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANG-------SELIKLYDLRSF-D-----KG---PFTTFSITDND 186 (311)
T ss_pred eEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecC-------CCeEEEEEeccc-C-----CC---CceeEccCCCC
Confidence 78888888777666666555667899999987777653 448999998651 1 12 22333344233
Q ss_pred CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC---cccceeEecCCCEEEEEecCCCCCCCC
Q 039497 435 TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW---IDTMPSWSPKGDLIAFSSNRHNPDNVE 511 (642)
Q Consensus 435 ~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~---~~~~~~~spdG~~l~~~~~~~~~~~~~ 511 (642)
......+.||||||+|+...+. ..++++|.=+|.. ...+...+. ......|+|||++|+..+.++.
T Consensus 187 ~~ew~~l~FS~dGK~iLlsT~~---s~~~~lDAf~G~~---~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~----- 255 (311)
T KOG1446|consen 187 EAEWTDLEFSPDGKSILLSTNA---SFIYLLDAFDGTV---KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGT----- 255 (311)
T ss_pred ccceeeeEEcCCCCEEEEEeCC---CcEEEEEccCCcE---eeeEeeccCCCCcceeEEECCCCcEEEEecCCCc-----
Confidence 2456679999999999988843 4799999988885 344443322 2245699999998888877765
Q ss_pred ceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEe
Q 039497 512 AFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN 561 (642)
Q Consensus 512 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~ 561 (642)
|++|++++++..........+ .+..+.|.|- +..|.+.
T Consensus 256 ---i~vw~~~tg~~v~~~~~~~~~-------~~~~~~fnP~--~~mf~sa 293 (311)
T KOG1446|consen 256 ---IHVWNLETGKKVAVLRGPNGG-------PVSCVRFNPR--YAMFVSA 293 (311)
T ss_pred ---EEEEEcCCCcEeeEecCCCCC-------CccccccCCc--eeeeeec
Confidence 999999998887766543233 3455667773 4444443
No 70
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=5.5e-11 Score=117.60 Aligned_cols=336 Identities=15% Similarity=0.184 Sum_probs=197.7
Q ss_pred cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEecc------CCce
Q 039497 195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRK------NRNF 268 (642)
Q Consensus 195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~------~~~~ 268 (642)
...|||-|..+++-- ..| ..|| +|. +-....++..++ +..+.|||.-++|+.-+... ....
T Consensus 215 yv~wSP~GTYL~t~H-k~G-I~lW-----GG~----~f~r~~RF~Hp~--Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~ 281 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFH-KQG-IALW-----GGE----SFDRIQRFYHPG--VQFIDFSPNEKYLVTYSPEPIIVEEDDNEG 281 (698)
T ss_pred eEEecCCceEEEEEe-ccc-eeee-----cCc----cHHHHHhccCCC--ceeeecCCccceEEEecCCccccCcccCCC
Confidence 469999998887751 112 2343 221 011345555555 55678999999998754322 1234
Q ss_pred eeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEe
Q 039497 269 RHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH 348 (642)
Q Consensus 269 ~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 348 (642)
..+.+||+.++..-.. | ...+.+..... ...||.|++++|-..
T Consensus 282 ~~l~IWDI~tG~lkrs-------------F-----------------~~~~~~~~~WP-------~frWS~DdKy~Arm~ 324 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRS-------------F-----------------PVIKSPYLKWP-------IFRWSHDDKYFARMT 324 (698)
T ss_pred ceEEEEEccccchhcc-------------e-----------------eccCCCccccc-------eEEeccCCceeEEec
Confidence 5777888744321100 0 00011111111 348999999988755
Q ss_pred cCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccc
Q 039497 349 DFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIP 424 (642)
Q Consensus 349 ~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 424 (642)
. ..|-+++...- ..+-. ..++..+.|||.+..|||.... .++...++-.+.. |.+.
T Consensus 325 ~----~sisIyEtpsf--~lld~Kslki~gIr~FswsP~~~llAYwtpe----~~~~parvtL~ev-------Ps~~--- 384 (698)
T KOG2314|consen 325 G----NSISIYETPSF--MLLDKKSLKISGIRDFSWSPTSNLLAYWTPE----TNNIPARVTLMEV-------PSKR--- 384 (698)
T ss_pred c----ceEEEEecCce--eeecccccCCccccCcccCCCcceEEEEccc----ccCCcceEEEEec-------Cccc---
Confidence 3 56666665441 11111 4578899999999999998743 2222223333332 1121
Q ss_pred cceEEccccCCCCccCcEECCCCCeEEEEeCCCC---------ceeEEEEECCCCccccceeeCCCCCCcccceeEecCC
Q 039497 425 CDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG---------HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495 (642)
Q Consensus 425 ~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g---------~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG 495 (642)
.++.-.-.. .....+.|-..|++|++-..|.. +-+|+++.- ... +.........+..++|-|.|
T Consensus 385 -~iRt~nlfn-VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrire--KdI---pve~velke~vi~FaWEP~g 457 (698)
T KOG2314|consen 385 -EIRTKNLFN-VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIRE--KDI---PVEVVELKESVIAFAWEPHG 457 (698)
T ss_pred -eeeecccee-eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeec--cCC---CceeeecchheeeeeeccCC
Confidence 222211111 33455789999999999765532 124555443 232 12222233446678999999
Q ss_pred CEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCC
Q 039497 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQ 575 (642)
Q Consensus 496 ~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~ 575 (642)
++++..+.+... ...+.|-+....++.+.+...... ..+.+.|||-|++++..+..+.
T Consensus 458 dkF~vi~g~~~k---~tvsfY~~e~~~~~~~lVk~~dk~--------~~N~vfwsPkG~fvvva~l~s~----------- 515 (698)
T KOG2314|consen 458 DKFAVISGNTVK---NTVSFYAVETNIKKPSLVKELDKK--------FANTVFWSPKGRFVVVAALVSR----------- 515 (698)
T ss_pred CeEEEEEccccc---cceeEEEeecCCCchhhhhhhccc--------ccceEEEcCCCcEEEEEEeccc-----------
Confidence 999998877642 455566666555555555433221 4578999999999998876542
Q ss_pred CCCCCcEEEEEcCCCceeeccCCC-CCCCCcEEecCCceEEeecCCCcccccceeeee
Q 039497 576 FQPYGDLYVVKLDGSGLRRLTWNG-YENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQF 632 (642)
Q Consensus 576 ~~~~~~l~~~~~~~~~~~~lt~~~-~~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~ 632 (642)
.++|+.||.+-...+++.... .....+.|.|.|+|++++.+..-+-.+..|-.|
T Consensus 516 ---~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~ 570 (698)
T KOG2314|consen 516 ---RGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIF 570 (698)
T ss_pred ---ccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEE
Confidence 459999998854444333322 234678999999999998877755555555544
No 71
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.47 E-value=4.3e-10 Score=115.26 Aligned_cols=231 Identities=19% Similarity=0.204 Sum_probs=159.3
Q ss_pred cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412 (642)
Q Consensus 335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (642)
..|-|.++.|+.... .+.|.++|+.+........ .+.+..+..+||++.++..+. +..+.+|+.....
T Consensus 418 ~~Fvpgd~~Iv~G~k---~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~sa-------DktVkfWdf~l~~ 487 (888)
T KOG0306|consen 418 SKFVPGDRYIVLGTK---NGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSA-------DKTVKFWDFKLVV 487 (888)
T ss_pred EEecCCCceEEEecc---CCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecC-------CcEEEEEeEEEEe
Confidence 367888887777433 4678888888776554444 778999999999999988874 7899999987622
Q ss_pred CCCCCCCCCc--ccc-ceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccce
Q 039497 413 DPSDDNNREE--IPC-DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489 (642)
Q Consensus 413 ~~~~~~~~~~--~~~-~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~ 489 (642)
+ .|+... +.- ..+.|.-. ..+..+.+||||++|+..--. ..-.||.+| +=+. -..|..+.-.+..+
T Consensus 488 ~---~~gt~~k~lsl~~~rtLel~--ddvL~v~~Spdgk~LaVsLLd-nTVkVyflD--tlKF---flsLYGHkLPV~sm 556 (888)
T KOG0306|consen 488 S---VPGTQKKVLSLKHTRTLELE--DDVLCVSVSPDGKLLAVSLLD-NTVKVYFLD--TLKF---FLSLYGHKLPVLSM 556 (888)
T ss_pred c---cCcccceeeeeccceEEecc--ccEEEEEEcCCCcEEEEEecc-CeEEEEEec--ceee---eeeecccccceeEE
Confidence 2 111110 000 01222222 356678999999999876543 334555555 4443 35567777788889
Q ss_pred eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCC
Q 039497 490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEP 569 (642)
Q Consensus 490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~ 569 (642)
..|||++.|+..+.+.+ +.+|-++-|....-.. .++. .+..+.|-|+ .+++|++...+
T Consensus 557 DIS~DSklivTgSADKn--------VKiWGLdFGDCHKS~f-AHdD-------Svm~V~F~P~-~~~FFt~gKD~----- 614 (888)
T KOG0306|consen 557 DISPDSKLIVTGSADKN--------VKIWGLDFGDCHKSFF-AHDD-------SVMSVQFLPK-THLFFTCGKDG----- 614 (888)
T ss_pred eccCCcCeEEeccCCCc--------eEEeccccchhhhhhh-cccC-------ceeEEEEccc-ceeEEEecCcc-----
Confidence 99999999998888765 7788777666544332 3344 5678999995 45777776543
Q ss_pred CCCCCCCCCCCcEEEEEcCC-CceeeccCCCCCCCCcEEecCCceEEeecC
Q 039497 570 VSWPNQFQPYGDLYVVKLDG-SGLRRLTWNGYENGTPAWHPGNQLDLGKLR 619 (642)
Q Consensus 570 ~~~~~~~~~~~~l~~~~~~~-~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~ 619 (642)
.+-.||-+. ..++.|..+...+..++.+|+|.+++++..
T Consensus 615 -----------kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~sh 654 (888)
T KOG0306|consen 615 -----------KVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH 654 (888)
T ss_pred -----------eEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccC
Confidence 788887543 346778888888899999999999998755
No 72
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.46 E-value=2.8e-11 Score=108.83 Aligned_cols=220 Identities=15% Similarity=0.108 Sum_probs=141.9
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
.+..|+|...-++++. .+...|.++|...++....+. .+.-..+.|+|+|+++++..+ +..+.+.+...
T Consensus 68 dql~w~~~~~d~~ata--s~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~k-------dD~it~id~r~- 137 (313)
T KOG1407|consen 68 DQLCWDPKHPDLFATA--SGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNK-------DDRITFIDART- 137 (313)
T ss_pred hhheeCCCCCcceEEe--cCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecC-------cccEEEEEecc-
Confidence 3567877655455544 234677888887777665554 556678899999999999875 45565555533
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeE
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~ 491 (642)
. ....-.... .....+.|+-++ -+.|..+..|..+|..|. .-+. +..|..++..-..+.|
T Consensus 138 -~------------~~~~~~~~~-~e~ne~~w~~~n-d~Fflt~GlG~v~ILsyp--sLkp---v~si~AH~snCicI~f 197 (313)
T KOG1407|consen 138 -Y------------KIVNEEQFK-FEVNEISWNNSN-DLFFLTNGLGCVEILSYP--SLKP---VQSIKAHPSNCICIEF 197 (313)
T ss_pred -c------------ceeehhccc-ceeeeeeecCCC-CEEEEecCCceEEEEecc--cccc---ccccccCCcceEEEEE
Confidence 1 111111111 234557888555 456666655655666555 3333 5677777777777899
Q ss_pred ecCCCEEEEEecCCCCCCCCceeEEEEeCCCC-ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCC
Q 039497 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS-GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV 570 (642)
Q Consensus 492 spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~ 570 (642)
+|+|++++..+.+.- +-+||++.- ..+.++...+ ++..++||-||+.|+..+.+--.
T Consensus 198 ~p~GryfA~GsADAl--------vSLWD~~ELiC~R~isRldw---------pVRTlSFS~dg~~lASaSEDh~I----- 255 (313)
T KOG1407|consen 198 DPDGRYFATGSADAL--------VSLWDVDELICERCISRLDW---------PVRTLSFSHDGRMLASASEDHFI----- 255 (313)
T ss_pred CCCCceEeeccccce--------eeccChhHhhhheeeccccC---------ceEEEEeccCcceeeccCccceE-----
Confidence 999999999988763 678888643 2344554443 46889999999999877765311
Q ss_pred CCCCCCCCCCcEEEEEcCCC-ceeeccCCCCCCCCcEEecCCceEEee
Q 039497 571 SWPNQFQPYGDLYVVKLDGS-GLRRLTWNGYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 571 ~~~~~~~~~~~l~~~~~~~~-~~~~lt~~~~~~~~~~~s~dg~~~~~~ 617 (642)
+|. ++.+| ++..+. ..+...+++|+|...+|+..
T Consensus 256 ----------DIA--~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA 290 (313)
T KOG1407|consen 256 ----------DIA--EVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYA 290 (313)
T ss_pred ----------EeE--ecccCCeEEEee-ccCCceeEEecCCCceeeEE
Confidence 333 33444 345544 34556799999998777543
No 73
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.46 E-value=1.9e-09 Score=110.65 Aligned_cols=471 Identities=14% Similarity=0.046 Sum_probs=261.5
Q ss_pred eeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCC-CCcccccccc--CCCEEEEEEeccCCCcccccccc
Q 039497 45 INFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIP-CSLFHDRPVA--RNNKLFFISAHEQPDQIFKSWSA 121 (642)
Q Consensus 45 ~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~-~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~ 121 (642)
..-..+-+ ||+-.|| .+=.+|..+||....+- .+..+...+ .++ ...+ .|.+++- +..+ ++
T Consensus 67 evt~l~~~-~d~l~lA-VGYaDGsVqif~~~s~~-~~~tfngHK~AVt---~l~fd~~G~rlaS-GskD---------t~ 130 (888)
T KOG0306|consen 67 EVTCLRSS-DDILLLA-VGYADGSVQIFSLESEE-ILITFNGHKAAVT---TLKFDKIGTRLAS-GSKD---------TD 130 (888)
T ss_pred eEEEeecc-CCcceEE-EEecCceEEeeccCCCc-eeeeecccccceE---EEEEcccCceEee-cCCC---------cc
Confidence 44555566 7777666 55668999999872221 111110001 111 0112 2333332 3222 25
Q ss_pred eEEEEccCCce-EecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC-cceEe
Q 039497 122 LYSTDLKASKF-TRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG-WPTWS 199 (642)
Q Consensus 122 l~~~~~~~~~~-~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~-~~~ws 199 (642)
|..+|+-+... .+|-.+.......-|.-+.++|+.++-+. .|-+|++++..-....-.+.+ .-++.
T Consensus 131 IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs------------~iK~WdL~tqhCf~Thvd~r~Eiw~l~ 198 (888)
T KOG0306|consen 131 IIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDS------------MIKFWDLETQHCFETHVDHRGEIWALV 198 (888)
T ss_pred EEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCc------------eEEEEecccceeeeEEecccceEEEEE
Confidence 66667765432 35555555555666776667777665544 688899988764443332222 11333
Q ss_pred eCCeEEEEEecCCCceEEEEEecCCCcccccCCcccee------e-CCCCCccccceeecCCcEEEEEEeccCCceeeEE
Q 039497 200 GDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTR------V-TPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIE 272 (642)
Q Consensus 200 pdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~------l-~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~ 272 (642)
-+++++++. ..++...+|.+........ ...... + ..........+..+++++++....++ -+.
T Consensus 199 ~~~~~lvt~-~~dse~~v~~L~~~~D~~~---~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~-----~~e 269 (888)
T KOG0306|consen 199 LDEKLLVTA-GTDSELKVWELAFEDDEKE---TNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADK-----VIE 269 (888)
T ss_pred EecceEEEE-ecCCceEEEEeeccccccc---ccccceeeccceeeeccCCceeEEeecCcccEEEEecchh-----hhh
Confidence 333555555 4567778898865543210 000000 1 11112233444567788777753322 222
Q ss_pred EEEe------------------------------------------ecCCCCcccCCeecCCCCEE-EEEEeecCCCCCC
Q 039497 273 IYDL------------------------------------------TLNPNFHHYNPFVSANSEFI-GYHRFRGESTEGQ 309 (642)
Q Consensus 273 ~~d~------------------------------------------~~~~~~~~~~~~~spDg~~l-~~~~~~~~~~~~~ 309 (642)
+|.+ .......+.++.|.|+++.. .+....+.
T Consensus 270 ~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nN----- 344 (888)
T KOG0306|consen 270 LFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANN----- 344 (888)
T ss_pred heeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecC-----
Confidence 2222 00112234456677766543 11111111
Q ss_pred cccceEeeccCCC-------ceeEEe--eeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeee
Q 039497 310 STIPHLEPVASPV-------KELRML--RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSW 380 (642)
Q Consensus 310 ~~~~~~~~~~~~~-------~~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 380 (642)
....+-.....+. ..++.. +...+.+.+|.|...++- .....|-+|+.++.+..+....+.+....|
T Consensus 345 tv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~S----ga~~SikiWn~~t~kciRTi~~~y~l~~~F 420 (888)
T KOG0306|consen 345 TVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLAS----GAGESIKIWNRDTLKCIRTITCGYILASKF 420 (888)
T ss_pred ceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeee----cCCCcEEEEEccCcceeEEeccccEEEEEe
Confidence 1111211111111 111111 112245677877653333 334678888888776555545567788899
Q ss_pred ecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCce
Q 039497 381 SPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHK 460 (642)
Q Consensus 381 spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~ 460 (642)
-|.+++++.... .+.+.++++.. .. ....+..+. +.++.++.+||++.++..+.+ .
T Consensus 421 vpgd~~Iv~G~k-------~Gel~vfdlaS--------~~-----l~Eti~AHd-gaIWsi~~~pD~~g~vT~saD---k 476 (888)
T KOG0306|consen 421 VPGDRYIVLGTK-------NGELQVFDLAS--------AS-----LVETIRAHD-GAIWSISLSPDNKGFVTGSAD---K 476 (888)
T ss_pred cCCCceEEEecc-------CCceEEEEeeh--------hh-----hhhhhhccc-cceeeeeecCCCCceEEecCC---c
Confidence 999998887764 78899999876 22 344445555 888999999999999887733 3
Q ss_pred eEEEEECC-----CCccccceeeC-------CCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEe
Q 039497 461 NLFVLDAV-----NGEFNGDIRQL-------TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528 (642)
Q Consensus 461 ~l~~~d~~-----~g~~~~~~~~l-------~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 528 (642)
.+-.|+.. .|.. -+.| ......+..+.+||||++|+..--+++ +.+|-+++-+.. +
T Consensus 477 tVkfWdf~l~~~~~gt~---~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnT--------VkVyflDtlKFf-l 544 (888)
T KOG0306|consen 477 TVKFWDFKLVVSVPGTQ---KKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNT--------VKVYFLDTLKFF-L 544 (888)
T ss_pred EEEEEeEEEEeccCccc---ceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCe--------EEEEEecceeee-e
Confidence 44444421 1221 0111 112334567899999999998887654 555555554443 3
Q ss_pred eecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEE
Q 039497 529 HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAW 607 (642)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~ 607 (642)
...++.- ++..+.+|||++.|+..+.+.+. .|| -++-|. .+-+-.+...+.++.|
T Consensus 545 sLYGHkL-------PV~smDIS~DSklivTgSADKnV---------------KiW--GLdFGDCHKS~fAHdDSvm~V~F 600 (888)
T KOG0306|consen 545 SLYGHKL-------PVLSMDISPDSKLIVTGSADKNV---------------KIW--GLDFGDCHKSFFAHDDSVMSVQF 600 (888)
T ss_pred eeccccc-------ceeEEeccCCcCeEEeccCCCce---------------EEe--ccccchhhhhhhcccCceeEEEE
Confidence 3345544 67889999999999888877643 455 455444 4556667777789999
Q ss_pred ecCCceEEeecCCC
Q 039497 608 HPGNQLDLGKLRLE 621 (642)
Q Consensus 608 s~dg~~~~~~~~~~ 621 (642)
-|+...|.++...+
T Consensus 601 ~P~~~~FFt~gKD~ 614 (888)
T KOG0306|consen 601 LPKTHLFFTCGKDG 614 (888)
T ss_pred cccceeEEEecCcc
Confidence 99888888875555
No 74
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=2.3e-11 Score=112.28 Aligned_cols=281 Identities=16% Similarity=0.165 Sum_probs=157.8
Q ss_pred cccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCce-----eEeecCC--CcceEeeCCeEEEE
Q 039497 135 LTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKR-----VIVCERG--GWPTWSGDSTIYFH 207 (642)
Q Consensus 135 lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~l~~~~~--~~~~wspdg~~~~~ 207 (642)
|..+........||.|||+||....++ .|.+|++.+=..+ +...+.+ ..+.|+||-+-+++
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr------------~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv 149 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDR------------SIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVV 149 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCc------------eEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEE
Confidence 444556667899999999999998776 6778887653211 1111112 24589999864444
Q ss_pred EecCCCceEEEEEecCCCcccccCCccceeeCC---------CCCccccceeecCCcEEEEEEeccCCceeeEEEEEeec
Q 039497 208 RQADDGWWSIFRVSFPENLEFLGFPIAPTRVTP---------PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL 278 (642)
Q Consensus 208 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~---------~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~ 278 (642)
.........+|.++-.+... -....+. +...+..+-+...+++|+.++... .|.+|++.
T Consensus 150 ~~~~g~~l~vyk~~K~~dG~------~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt-----~i~lw~lk- 217 (420)
T KOG2096|consen 150 SVKRGNKLCVYKLVKKTDGS------GSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDT-----KICLWDLK- 217 (420)
T ss_pred EEccCCEEEEEEeeecccCC------CCcccccccccccchhcccceEEEeecCCceEEEEecCCC-----cEEEEecC-
Confidence 42334445666665433210 1111111 011122233345667776654433 77777772
Q ss_pred CCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEE
Q 039497 279 NPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKI 358 (642)
Q Consensus 279 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~ 358 (642)
|+.|- .+...+......+.||+|++|+.... .....+|-
T Consensus 218 --------------Gq~L~--------------------------~idtnq~~n~~aavSP~GRFia~~gF-TpDVkVwE 256 (420)
T KOG2096|consen 218 --------------GQLLQ--------------------------SIDTNQSSNYDAAVSPDGRFIAVSGF-TPDVKVWE 256 (420)
T ss_pred --------------Cceee--------------------------eeccccccccceeeCCCCcEEEEecC-CCCceEEE
Confidence 10000 00011122234467888877766443 22233332
Q ss_pred E--ECCCC--CeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497 359 A--KSDGS--KRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL 430 (642)
Q Consensus 359 ~--d~~~~--~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 430 (642)
. .-+|. +..++.. ...+..++||++.++++.++. ++..+||+.+.+-. .+. .++.|
T Consensus 257 ~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk-------DG~wriwdtdVrY~----~~q-----Dpk~L 320 (420)
T KOG2096|consen 257 PIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK-------DGKWRIWDTDVRYE----AGQ-----DPKIL 320 (420)
T ss_pred EEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec-------CCcEEEeeccceEe----cCC-----CchHh
Confidence 1 11221 1111111 345778899999999999985 78999999865211 111 22222
Q ss_pred cc-------cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-CCCCcccceeEecCCCEEEEEe
Q 039497 431 TK-------EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMPSWSPKGDLIAFSS 502 (642)
Q Consensus 431 ~~-------~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~~~~~~~spdG~~l~~~~ 502 (642)
.. .. ...-.+.+||.|+.|+.+.. ..|.++...+|+. ...+. -+...+..++|++||++++..+
T Consensus 321 k~g~~pl~aag-~~p~RL~lsP~g~~lA~s~g----s~l~~~~se~g~~---~~~~e~~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 321 KEGSAPLHAAG-SEPVRLELSPSGDSLAVSFG----SDLKVFASEDGKD---YPELEDIHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred hcCCcchhhcC-CCceEEEeCCCCcEEEeecC----CceEEEEcccCcc---chhHHHhhcCceeeEEecCCCcEEeeec
Confidence 22 11 23346899999999887763 3688888888874 22232 2445678899999999998776
Q ss_pred cC
Q 039497 503 NR 504 (642)
Q Consensus 503 ~~ 504 (642)
++
T Consensus 393 dr 394 (420)
T KOG2096|consen 393 DR 394 (420)
T ss_pred ce
Confidence 65
No 75
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.44 E-value=1.5e-11 Score=120.37 Aligned_cols=301 Identities=15% Similarity=0.091 Sum_probs=176.9
Q ss_pred eeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEe
Q 039497 237 RVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLE 316 (642)
Q Consensus 237 ~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~ 316 (642)
++..+.--+...++.|.|-+++. |+....+.+||+..-. .. .....
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~s-----Gs~Dy~v~~wDf~gMd----------------------as-------~~~fr 207 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVS-----GSLDYTVKFWDFQGMD----------------------AS-------MRSFR 207 (641)
T ss_pred eccCCceEEEEeeecCCCceeee-----ccccceEEEEeccccc----------------------cc-------chhhh
Confidence 34444334566778899988887 6667799999983211 00 00000
Q ss_pred eccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-----------cC---Cceeeeeec
Q 039497 317 PVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-----------DR---TAFYNSWSP 382 (642)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-----------~~---~~~~~~~sp 382 (642)
.+... -......+.||+.|.+|+.++. ..+..++|.+|.+...... .+ .+....|.|
T Consensus 208 ~l~P~------E~h~i~sl~ys~Tg~~iLvvsg---~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP 278 (641)
T KOG0772|consen 208 QLQPC------ETHQINSLQYSVTGDQILVVSG---SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHP 278 (641)
T ss_pred ccCcc------cccccceeeecCCCCeEEEEec---CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeecccccc
Confidence 00000 0011234578888888777643 4666777777766544332 11 244668999
Q ss_pred CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeE
Q 039497 383 TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNL 462 (642)
Q Consensus 383 dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l 462 (642)
+.+..+.++ ..++.++||+++. ..+++.--......+....+...+|+|||++|+..- .+| .|
T Consensus 279 ~~k~~FlT~------s~DgtlRiWdv~~--------~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc-~DG--SI 341 (641)
T KOG0772|consen 279 DNKEEFLTC------SYDGTLRIWDVNN--------TKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGC-LDG--SI 341 (641)
T ss_pred CcccceEEe------cCCCcEEEEecCC--------chhheeEEeeccCCCcccCceeeecCCCcchhhhcc-cCC--ce
Confidence 988887776 3589999999965 222110000011111113456789999999977554 345 45
Q ss_pred EEEECCC--CccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcc
Q 039497 463 FVLDAVN--GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVD 540 (642)
Q Consensus 463 ~~~d~~~--g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 540 (642)
-+|+..+ -...-.++.-......+.+++||+||++|+-.+.++. |.+||+..-+.......+...
T Consensus 342 Q~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t--------LKvWDLrq~kkpL~~~tgL~t----- 408 (641)
T KOG0772|consen 342 QIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT--------LKVWDLRQFKKPLNVRTGLPT----- 408 (641)
T ss_pred eeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc--------eeeeeccccccchhhhcCCCc-----
Confidence 5555421 1110001111222336788999999999998887765 999999865544433333322
Q ss_pred cccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecC-CceEEeec
Q 039497 541 RERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPG-NQLDLGKL 618 (642)
Q Consensus 541 ~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~d-g~~~~~~~ 618 (642)
+..-.+..||||.+.|+....-.... ..+.|+.++.-+-+ +..|-.....+....|+|- +|.++++.
T Consensus 409 ~~~~tdc~FSPd~kli~TGtS~~~~~-----------~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsg 477 (641)
T KOG0772|consen 409 PFPGTDCCFSPDDKLILTGTSAPNGM-----------TAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSG 477 (641)
T ss_pred cCCCCccccCCCceEEEecccccCCC-----------CCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecC
Confidence 11336889999999777665433221 23479998866543 4445445566678899997 67778777
Q ss_pred CCC
Q 039497 619 RLE 621 (642)
Q Consensus 619 ~~~ 621 (642)
+.+
T Consensus 478 dG~ 480 (641)
T KOG0772|consen 478 DGT 480 (641)
T ss_pred CCc
Confidence 643
No 76
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.44 E-value=5.7e-11 Score=111.77 Aligned_cols=308 Identities=11% Similarity=0.070 Sum_probs=201.2
Q ss_pred eeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEe--------ecCCCCcccCCeecCCCCEEEEEEeecCCCC
Q 039497 236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL--------TLNPNFHHYNPFVSANSEFIGYHRFRGESTE 307 (642)
Q Consensus 236 ~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~--------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 307 (642)
..+..+...++..+++|+..+++. |+.....++|+. .+++...+....||.||..|+.--+.+.
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aT-----GGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~--- 129 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVAT-----GGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGK--- 129 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEe-----cCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCcc---
Confidence 445556667788888897776555 444556778888 4566777888899999999998766665
Q ss_pred CCcccceEeeccCCCceeEEe-ee-CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecC
Q 039497 308 GQSTIPHLEPVASPVKELRML-RL-NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPT 383 (642)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spd 383 (642)
..+|....+. ....+. .. ...-+.|+|-+..|++. .....+|++.+..+...++.. ......-.|.||
T Consensus 130 ---v~v~~~stg~--~~~~~~~e~~dieWl~WHp~a~illAG---~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pd 201 (399)
T KOG0296|consen 130 ---VLVFKVSTGG--EQWKLDQEVEDIEWLKWHPRAHILLAG---STDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPD 201 (399)
T ss_pred ---EEEEEcccCc--eEEEeecccCceEEEEecccccEEEee---cCCCcEEEEECCCcceeeEecCCCCCcccccccCC
Confidence 3333333222 222221 11 11346789988766554 345789999998865555555 445667789999
Q ss_pred CCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEE
Q 039497 384 EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLF 463 (642)
Q Consensus 384 g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~ 463 (642)
|++++.... ++.+.+|+..+ +. ....+...+......+.++-++. +++..++++ ..+
T Consensus 202 GKr~~tgy~-------dgti~~Wn~kt--------g~-----p~~~~~~~e~~~~~~~~~~~~~~-~~~~g~~e~--~~~ 258 (399)
T KOG0296|consen 202 GKRILTGYD-------DGTIIVWNPKT--------GQ-----PLHKITQAEGLELPCISLNLAGS-TLTKGNSEG--VAC 258 (399)
T ss_pred CceEEEEec-------CceEEEEecCC--------Cc-----eeEEecccccCcCCccccccccc-eeEeccCCc--cEE
Confidence 999988763 78999999876 33 44445433323344456666664 445555443 566
Q ss_pred EEECCCCccccceeeCCCC---------C---CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497 464 VLDAVNGEFNGDIRQLTDG---------P---WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA 531 (642)
Q Consensus 464 ~~d~~~g~~~~~~~~l~~~---------~---~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 531 (642)
..+..+|+. ...... . ..+..+.||.+=...+..+.++. |.+||+....+|.+...
T Consensus 259 ~~~~~sgKV----v~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~--------i~iyD~a~~~~R~~c~h 326 (399)
T KOG0296|consen 259 GVNNGSGKV----VNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGT--------IAIYDLAASTLRHICEH 326 (399)
T ss_pred EEccccceE----EEecCCCCccccccchhhhhhhhhcccccccchhhcccccce--------EEEEecccchhheeccC
Confidence 677766763 332221 1 12333455655555666666664 99999998888877642
Q ss_pred CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecC
Q 039497 532 GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPG 610 (642)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~d 610 (642)
+. .+..+.|-+ -.+|+....++ .|+.||..+|+ +..++.+...+...+++|+
T Consensus 327 --e~-------~V~~l~w~~-t~~l~t~c~~g-----------------~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~ 379 (399)
T KOG0296|consen 327 --ED-------GVTKLKWLN-TDYLLTACANG-----------------KVRQWDARTGQLKFTYTGHQMGILDFALSPQ 379 (399)
T ss_pred --CC-------ceEEEEEcC-cchheeeccCc-----------------eEEeeeccccceEEEEecCchheeEEEEcCC
Confidence 32 467889988 55666555443 89999988877 5577778888899999999
Q ss_pred CceEEeecCCC
Q 039497 611 NQLDLGKLRLE 621 (642)
Q Consensus 611 g~~~~~~~~~~ 621 (642)
.+++++....+
T Consensus 380 ~~~vvT~s~D~ 390 (399)
T KOG0296|consen 380 KRLVVTVSDDN 390 (399)
T ss_pred CcEEEEecCCC
Confidence 99998865443
No 77
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.41 E-value=1.1e-11 Score=127.75 Aligned_cols=187 Identities=14% Similarity=0.154 Sum_probs=142.6
Q ss_pred cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEE
Q 039497 372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451 (642)
Q Consensus 372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~ 451 (642)
.+.+....|+||.++|+-++. +..++||.+.+ . . .......+. ..++.+.|+|-|=|++
T Consensus 451 ~GPVyg~sFsPd~rfLlScSE-------D~svRLWsl~t--~------s-----~~V~y~GH~-~PVwdV~F~P~GyYFa 509 (707)
T KOG0263|consen 451 SGPVYGCSFSPDRRFLLSCSE-------DSSVRLWSLDT--W------S-----CLVIYKGHL-APVWDVQFAPRGYYFA 509 (707)
T ss_pred CCceeeeeecccccceeeccC-------Ccceeeeeccc--c------e-----eEEEecCCC-cceeeEEecCCceEEE
Confidence 566888999999999988873 78999999977 2 1 233334343 6788899999997776
Q ss_pred EEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA 531 (642)
Q Consensus 452 ~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 531 (642)
.++ .+....||..| .-.. ++.+..+...+..+.|+|+..+++..+.+.. +.+||+.+|...++..
T Consensus 510 tas-~D~tArLWs~d--~~~P---lRifaghlsDV~cv~FHPNs~Y~aTGSsD~t--------VRlWDv~~G~~VRiF~- 574 (707)
T KOG0263|consen 510 TAS-HDQTARLWSTD--HNKP---LRIFAGHLSDVDCVSFHPNSNYVATGSSDRT--------VRLWDVSTGNSVRIFT- 574 (707)
T ss_pred ecC-CCceeeeeecc--cCCc---hhhhcccccccceEEECCcccccccCCCCce--------EEEEEcCCCcEEEEec-
Confidence 664 33334555544 3343 4556666667777999999999988877654 8999999998888775
Q ss_pred CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecC
Q 039497 532 GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPG 610 (642)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~d 610 (642)
++.+ .+.++.|||+|++|+..+.++ .|.+||+.++. +.++-.+.+.+.++.||.|
T Consensus 575 GH~~-------~V~al~~Sp~Gr~LaSg~ed~-----------------~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~d 630 (707)
T KOG0263|consen 575 GHKG-------PVTALAFSPCGRYLASGDEDG-----------------LIKIWDLANGSLVKQLKGHTGTIYSLSFSRD 630 (707)
T ss_pred CCCC-------ceEEEEEcCCCceEeecccCC-----------------cEEEEEcCCCcchhhhhcccCceeEEEEecC
Confidence 5666 789999999999998877664 78888998865 6677777778899999999
Q ss_pred CceEEeec
Q 039497 611 NQLDLGKL 618 (642)
Q Consensus 611 g~~~~~~~ 618 (642)
|..|++..
T Consensus 631 g~vLasgg 638 (707)
T KOG0263|consen 631 GNVLASGG 638 (707)
T ss_pred CCEEEecC
Confidence 99998753
No 78
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.41 E-value=3.5e-09 Score=104.82 Aligned_cols=293 Identities=13% Similarity=0.154 Sum_probs=148.7
Q ss_pred eEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEe-----ccCCceeeEEEEEeecCCCCcccCCee
Q 039497 215 WSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATR-----RKNRNFRHIEIYDLTLNPNFHHYNPFV 289 (642)
Q Consensus 215 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~-----~~~~~~~~i~~~d~~~~~~~~~~~~~~ 289 (642)
-+|+.+|.++. +.......+..... .+||||+.|+++.. ..|.....|.++|..+....
T Consensus 27 ~~v~ViD~~~~--------~v~g~i~~G~~P~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~------- 90 (352)
T TIGR02658 27 TQVYTIDGEAG--------RVLGMTDGGFLPNP-VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI------- 90 (352)
T ss_pred ceEEEEECCCC--------EEEEEEEccCCCce-eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE-------
Confidence 48889998887 33333333333333 49999999998765 11333446777776332100
Q ss_pred cCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEE
Q 039497 290 SANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTL 369 (642)
Q Consensus 290 spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l 369 (642)
....+..+++. +.........+||||++|++.. .+....+-++|+.+++....
T Consensus 91 ------------------------~~i~~p~~p~~--~~~~~~~~~~ls~dgk~l~V~n-~~p~~~V~VvD~~~~kvv~e 143 (352)
T TIGR02658 91 ------------------------ADIELPEGPRF--LVGTYPWMTSLTPDNKTLLFYQ-FSPSPAVGVVDLEGKAFVRM 143 (352)
T ss_pred ------------------------eEEccCCCchh--hccCccceEEECCCCCEEEEec-CCCCCEEEEEECCCCcEEEE
Confidence 00011001000 0111113568999999776543 24467899999998876553
Q ss_pred eecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcccc-CCCCccCcEECC-CC
Q 039497 370 IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE-ETGNNAFPSCSP-DG 447 (642)
Q Consensus 370 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~Sp-Dg 447 (642)
..-.....+.-+++.+..+.+. ++....+.++. + |+. ......+... .......+.+++ ||
T Consensus 144 i~vp~~~~vy~t~e~~~~~~~~--------Dg~~~~v~~d~--~------g~~-~~~~~~vf~~~~~~v~~rP~~~~~dg 206 (352)
T TIGR02658 144 MDVPDCYHIFPTANDTFFMHCR--------DGSLAKVGYGT--K------GNP-KIKPTEVFHPEDEYLINHPAYSNKSG 206 (352)
T ss_pred EeCCCCcEEEEecCCccEEEee--------cCceEEEEecC--C------Cce-EEeeeeeecCCccccccCCceEcCCC
Confidence 3311111111111111111121 22222222222 1 110 0011122111 101223446677 88
Q ss_pred CeEEEEeCCCCceeEEEEECCCCccc--cceeeCCCC-------CCcccceeEecCCCEEEEEecCCCCC--CCCceeEE
Q 039497 448 KFLVFRSGRSGHKNLFVLDAVNGEFN--GDIRQLTDG-------PWIDTMPSWSPKGDLIAFSSNRHNPD--NVEAFSLY 516 (642)
Q Consensus 448 ~~l~~~~~~~g~~~l~~~d~~~g~~~--~~~~~l~~~-------~~~~~~~~~spdG~~l~~~~~~~~~~--~~~~~~l~ 516 (642)
++++.+.. ..|+.+|+.+.+.. .....++.. ++....++++|||+++++.......+ .....+|+
T Consensus 207 ~~~~vs~e----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ 282 (352)
T TIGR02658 207 RLVWPTYT----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLF 282 (352)
T ss_pred cEEEEecC----CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEE
Confidence 76655543 48999996543320 001112211 11122379999999999854322100 11346899
Q ss_pred EEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeec
Q 039497 517 VIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRL 595 (642)
Q Consensus 517 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~l 595 (642)
++|..+++...-...+. .+..+++||||+.++|..+... ..|.++|..+++ ++.+
T Consensus 283 ViD~~t~kvi~~i~vG~---------~~~~iavS~Dgkp~lyvtn~~s---------------~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 283 VVDAKTGKRLRKIELGH---------EIDSINVSQDAKPLLYALSTGD---------------KTLYIFDAETGKELSSV 338 (352)
T ss_pred EEECCCCeEEEEEeCCC---------ceeeEEECCCCCeEEEEeCCCC---------------CcEEEEECcCCeEEeee
Confidence 99998877655443332 4578999999994445554322 279999988765 4444
No 79
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.40 E-value=2.2e-09 Score=111.40 Aligned_cols=367 Identities=11% Similarity=0.027 Sum_probs=207.0
Q ss_pred ceEEEEccCCceEeccc-CCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee-cC-C--Cc
Q 039497 121 ALYSTDLKASKFTRLTP-YGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC-ER-G--GW 195 (642)
Q Consensus 121 ~l~~~~~~~~~~~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~-~--~~ 195 (642)
+|.+.++..++...-.. ..+.....+|.-||..+..+... .+.+.+||++..+..-++. .+ + ..
T Consensus 225 ~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~-----------~G~m~~wDLe~kkl~~v~~nah~~sv~~ 293 (910)
T KOG1539|consen 225 TVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRS-----------NGDMAFWDLEKKKLINVTRNAHYGSVTG 293 (910)
T ss_pred eEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccC-----------CceEEEEEcCCCeeeeeeeccccCCccc
Confidence 45555666554432222 23556778999999998766533 3479999999987666654 22 2 24
Q ss_pred ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceee-CCCCCccccceee-cCCcEEEEEEeccCCceeeEEE
Q 039497 196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRV-TPPGVHCFTPAAF-HDGKRLAVATRRKNRNFRHIEI 273 (642)
Q Consensus 196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~S-pdG~~l~~~~~~~~~~~~~i~~ 273 (642)
..+.|...+++++ ..|....+|..|...|.+ +..+. .++......+.+. ..|..|..+..++ .++.
T Consensus 294 ~~fl~~epVl~ta-~~DnSlk~~vfD~~dg~p------R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Dr-----t~r~ 361 (910)
T KOG1539|consen 294 ATFLPGEPVLVTA-GADNSLKVWVFDSGDGVP------RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDR-----TLRS 361 (910)
T ss_pred ceecCCCceEeec-cCCCceeEEEeeCCCCcc------hheeeccCCCCCchheeeeccCcEEEEecccCc-----chhh
Confidence 4788887888887 677888999999776632 22222 2223334445553 5666666654433 3444
Q ss_pred EEee-------cCC--------CCccc------C---CeecCCCCEE-----EEEEeecCCCCCCcccceEeeccCCCce
Q 039497 274 YDLT-------LNP--------NFHHY------N---PFVSANSEFI-----GYHRFRGESTEGQSTIPHLEPVASPVKE 324 (642)
Q Consensus 274 ~d~~-------~~~--------~~~~~------~---~~~spDg~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (642)
+++. ... ..... . ..+.-++.+. ++..+.++.. ...|-...+.. .+
T Consensus 362 fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~----~~tW~~~n~~~-G~ 436 (910)
T KOG1539|consen 362 FSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRS----AYTWNFRNKTS-GR 436 (910)
T ss_pred hhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcce----EEEEeccCccc-cc
Confidence 4440 000 00000 0 0000000000 0000111100 01111110000 00
Q ss_pred eEEe-------eeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-----cCCceeeeeecCCCEEEEEEc
Q 039497 325 LRML-------RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-----DRTAFYNSWSPTEKHVIYTST 392 (642)
Q Consensus 325 ~~~~-------~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-----~~~~~~~~~spdg~~l~~~~~ 392 (642)
..+. .......+.|+-|++. |++ ...+.|-++|+.+|-.+.-.. ...+..++..--++.++.+.
T Consensus 437 ~~L~~~~~~~~~~~~~av~vs~CGNF~-~IG--~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~- 512 (910)
T KOG1539|consen 437 HVLDPKRFKKDDINATAVCVSFCGNFV-FIG--YSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAG- 512 (910)
T ss_pred EEecCccccccCcceEEEEEeccCceE-EEe--ccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEcc-
Confidence 0010 1112356778889854 443 235788899999887655431 44566666554455455443
Q ss_pred CCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcc
Q 039497 393 GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472 (642)
Q Consensus 393 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~ 472 (642)
-++-+.+|+... . . -...+.-+. ....+..+.....++..- +...|.++|..+-+.
T Consensus 513 ------~~Gilkfw~f~~--k--------~---l~~~l~l~~--~~~~iv~hr~s~l~a~~~---ddf~I~vvD~~t~kv 568 (910)
T KOG1539|consen 513 ------ADGILKFWDFKK--K--------V---LKKSLRLGS--SITGIVYHRVSDLLAIAL---DDFSIRVVDVVTRKV 568 (910)
T ss_pred ------CcceEEEEecCC--c--------c---eeeeeccCC--Ccceeeeeehhhhhhhhc---CceeEEEEEchhhhh
Confidence 367888888854 1 0 112221111 233344444444444333 455899999988776
Q ss_pred ccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCC
Q 039497 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD 552 (642)
Q Consensus 473 ~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~D 552 (642)
++.+..+...++...|||||+||+.++.+.. |.+||+-++..--... ... ....+.|||.
T Consensus 569 ---vR~f~gh~nritd~~FS~DgrWlisasmD~t--------Ir~wDlpt~~lID~~~--vd~-------~~~sls~SPn 628 (910)
T KOG1539|consen 569 ---VREFWGHGNRITDMTFSPDGRWLISASMDST--------IRTWDLPTGTLIDGLL--VDS-------PCTSLSFSPN 628 (910)
T ss_pred ---hHHhhccccceeeeEeCCCCcEEEEeecCCc--------EEEEeccCcceeeeEe--cCC-------cceeeEECCC
Confidence 6777777778899999999999999998876 9999998876543222 222 4578999999
Q ss_pred CCEEEEEEecC
Q 039497 553 GEWLLFTANLG 563 (642)
Q Consensus 553 g~~l~~~~~~~ 563 (642)
|.+|+.+..+.
T Consensus 629 gD~LAT~Hvd~ 639 (910)
T KOG1539|consen 629 GDFLATVHVDQ 639 (910)
T ss_pred CCEEEEEEecC
Confidence 99999888664
No 80
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.39 E-value=5.6e-11 Score=126.89 Aligned_cols=243 Identities=18% Similarity=0.169 Sum_probs=149.3
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEEC------CC--CC--------eeEEee--cCCceeeeeecCCCEEEEEEcCC
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKS------DG--SK--------RWTLIK--DRTAFYNSWSPTEKHVIYTSTGP 394 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~------~~--~~--------~~~l~~--~~~~~~~~~spdg~~l~~~~~~~ 394 (642)
....|||||+++|..++ +....||-+.. -+ +. ...+.. ...+.++.|+||+.+|+-++.
T Consensus 73 ~CVR~S~dG~~lAsGSD-D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~-- 149 (942)
T KOG0973|consen 73 NCVRFSPDGSYLASGSD-DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSL-- 149 (942)
T ss_pred eEEEECCCCCeEeeccC-cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecc--
Confidence 46789999999999765 33334455541 11 11 111111 567889999999999998875
Q ss_pred CcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcccc
Q 039497 395 IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474 (642)
Q Consensus 395 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~ 474 (642)
++.+.||+... -. ..+.+..+. ..+..++|-|=|+||+..+++ ..|.+|.+.+-..
T Consensus 150 -----DnsViiwn~~t--------F~-----~~~vl~~H~-s~VKGvs~DP~Gky~ASqsdD---rtikvwrt~dw~i-- 205 (942)
T KOG0973|consen 150 -----DNSVIIWNAKT--------FE-----LLKVLRGHQ-SLVKGVSWDPIGKYFASQSDD---RTLKVWRTSDWGI-- 205 (942)
T ss_pred -----cceEEEEcccc--------ce-----eeeeeeccc-ccccceEECCccCeeeeecCC---ceEEEEEccccee--
Confidence 78899999865 11 566777776 888899999999999988743 4677777544222
Q ss_pred ceeeCCCCC------CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceE
Q 039497 475 DIRQLTDGP------WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVC 548 (642)
Q Consensus 475 ~~~~l~~~~------~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 548 (642)
.+.++..- .....+.|||||++|+....-++ ....+-+++.++=+. ....-++.. .+..++
T Consensus 206 -~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~----~~~~~~IieR~tWk~-~~~LvGH~~-------p~evvr 272 (942)
T KOG0973|consen 206 -EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG----GKSTIAIIERGTWKV-DKDLVGHSA-------PVEVVR 272 (942)
T ss_pred -eEeeccchhhCCCcceeeecccCCCcCeecchhhccC----CcceeEEEecCCcee-eeeeecCCC-------ceEEEE
Confidence 34454321 23455799999999998876554 455666666533221 111224444 344555
Q ss_pred EcC--------CCCE--------EEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCC--CCCCCCcEEecC
Q 039497 549 FSA--------DGEW--------LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN--GYENGTPAWHPG 610 (642)
Q Consensus 549 ~S~--------Dg~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~--~~~~~~~~~s~d 610 (642)
|+| +|.. ++.+.... ..|-+|......+..+... .-.+.+++||||
T Consensus 273 FnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD----------------rSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspd 336 (942)
T KOG0973|consen 273 FNPKLFERNNKNGTSTQPNCYYCIAAVGSQD----------------RSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPD 336 (942)
T ss_pred eChHHhccccccCCccCCCcceEEEEEecCC----------------ccEEEEecCCCCchhhhhhhhcCceeeeeEcCC
Confidence 544 2211 33333222 2677776655444433332 345689999999
Q ss_pred CceEEeecCCCcccccceeeeeccc
Q 039497 611 NQLDLGKLRLEDDIGDKLRGQFDEP 635 (642)
Q Consensus 611 g~~~~~~~~~~~~~~~~~~~~~~~~ 635 (642)
|..|+.+...| .+..-.|+|.
T Consensus 337 G~~LfacS~DG----tV~~i~Fee~ 357 (942)
T KOG0973|consen 337 GFSLFACSLDG----TVALIHFEEK 357 (942)
T ss_pred CCeEEEEecCC----eEEEEEcchH
Confidence 98887776555 2344556554
No 81
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.39 E-value=7.3e-11 Score=109.45 Aligned_cols=356 Identities=15% Similarity=0.143 Sum_probs=197.2
Q ss_pred ceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeec-CCC--cce
Q 039497 121 ALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCE-RGG--WPT 197 (642)
Q Consensus 121 ~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~~--~~~ 197 (642)
.+.+.+..+-+..+|...-.......|+.|.-+|.-+.... .-|.+|++...+..--..+ ..+ ...
T Consensus 30 rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~-----------~~vqvwsl~Qpew~ckIdeg~agls~~~ 98 (447)
T KOG4497|consen 30 RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKD-----------PKVQVWSLVQPEWYCKIDEGQAGLSSIS 98 (447)
T ss_pred EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeecc-----------ceEEEEEeecceeEEEeccCCCcceeee
Confidence 46666777666666654433456678999999987554332 2588999988875544332 222 569
Q ss_pred EeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEE---EE
Q 039497 198 WSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIE---IY 274 (642)
Q Consensus 198 wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~---~~ 274 (642)
|||||+.+...+..+-...+|.++...+ .-+..+...+...+|.|||++.+...++.-...-.|. -|
T Consensus 99 WSPdgrhiL~tseF~lriTVWSL~t~~~----------~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W 168 (447)
T KOG4497|consen 99 WSPDGRHILLTSEFDLRITVWSLNTQKG----------YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW 168 (447)
T ss_pred ECCCcceEeeeecceeEEEEEEecccee----------EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence 9999965544435556667777765544 4455555556678999999999998766411110110 01
Q ss_pred Ee---ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCC
Q 039497 275 DL---TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFE 351 (642)
Q Consensus 275 d~---~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 351 (642)
.+ ............|||||..|+....--+. .+.... . ........|||-++.|+..+..
T Consensus 169 ~ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley-----kv~aYe---~--------~lG~k~v~wsP~~qflavGsyD- 231 (447)
T KOG4497|consen 169 ILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY-----KVYAYE---R--------GLGLKFVEWSPCNQFLAVGSYD- 231 (447)
T ss_pred HHHHhcCCCcccccCceECCCCcEEEEecchhhh-----eeeeee---e--------ccceeEEEeccccceEEeeccc-
Confidence 11 01112233467899999999886321110 000000 0 0111245899999998886552
Q ss_pred CceeEEEEECCCCCe----eEEee-c----------------CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 352 LNAGIKIAKSDGSKR----WTLIK-D----------------RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 352 ~~~~l~~~d~~~~~~----~~l~~-~----------------~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
..+.++|--+-+. -.+.. . -....+.|.|. +....+|....
T Consensus 232 --~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~----------------~~~a~~~~~se 293 (447)
T KOG4497|consen 232 --QMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPT----------------DLEAHIWEESE 293 (447)
T ss_pred --hhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCC----------------ccccCccccch
Confidence 2222222111000 00000 0 00111122221 11111111110
Q ss_pred ecCCCCCCCCCc---ccc---ceEE---ccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC
Q 039497 411 QLDPSDDNNREE---IPC---DVKI---LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD 481 (642)
Q Consensus 411 ~~~~~~~~~~~~---~~~---~~~~---l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~ 481 (642)
..-+ .+- +.++ ..... -.+..++||+|..+++... +.-...||+||++.-+. ..+..
T Consensus 294 --------~~YE~~~~pv~~~~lkp~tD~pnPk-~g~g~lafs~Ds~y~aTrn-d~~PnalW~Wdlq~l~l----~avLi 359 (447)
T KOG4497|consen 294 --------TIYEQQMTPVKVHKLKPPTDFPNPK-CGAGKLAFSCDSTYAATRN-DKYPNALWLWDLQNLKL----HAVLI 359 (447)
T ss_pred --------hhhhhhhcceeeecccCCCCCCCcc-cccceeeecCCceEEeeec-CCCCceEEEEechhhhh----hhhhh
Confidence 0000 000 1111 11222 3456789999998877554 34456899999997663 44333
Q ss_pred CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEe
Q 039497 482 GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN 561 (642)
Q Consensus 482 ~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~ 561 (642)
....+..+.|.|.-.+|+.-... .+||.|.+.+.....+...+. .+..+.|.-+|..|+..+.
T Consensus 360 Qk~piraf~WdP~~prL~vctg~--------srLY~W~psg~~~V~vP~~GF---------~i~~l~W~~~g~~i~l~~k 422 (447)
T KOG4497|consen 360 QKHPIRAFEWDPGRPRLVVCTGK--------SRLYFWAPSGPRVVGVPKKGF---------NIQKLQWLQPGEFIVLCGK 422 (447)
T ss_pred hccceeEEEeCCCCceEEEEcCC--------ceEEEEcCCCceEEecCCCCc---------eeeeEEecCCCcEEEEEcC
Confidence 33456778999988888777644 349999998855444444332 4678999999999988876
Q ss_pred cC
Q 039497 562 LG 563 (642)
Q Consensus 562 ~~ 563 (642)
+.
T Consensus 423 Da 424 (447)
T KOG4497|consen 423 DA 424 (447)
T ss_pred Cc
Confidence 53
No 82
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.37 E-value=3.2e-12 Score=121.61 Aligned_cols=223 Identities=11% Similarity=0.080 Sum_probs=156.1
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
+...||++|.+++-.. ...-|-+++..-.....+.. ...+..++|||+..+++.++ +++.+.||+..-
T Consensus 142 r~m~ws~~g~wmiSgD---~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~S-------dDg~ikiWdf~~ 211 (464)
T KOG0284|consen 142 RTMKWSHNGTWMISGD---KGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCS-------DDGTIKIWDFRM 211 (464)
T ss_pred eeEEEccCCCEEEEcC---CCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEec-------CCCeEEEEeccC
Confidence 4568999999887643 23445555554443332222 46788999999888888776 489999999865
Q ss_pred ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccccee
Q 039497 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS 490 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~ 490 (642)
.. ..+.|..+. ..+..+.|.|.-..|+ ...++. -|-+||..+|+. +..|..+...+....
T Consensus 212 --------~k-----ee~vL~GHg-wdVksvdWHP~kgLia-sgskDn--lVKlWDprSg~c---l~tlh~HKntVl~~~ 271 (464)
T KOG0284|consen 212 --------PK-----EERVLRGHG-WDVKSVDWHPTKGLIA-SGSKDN--LVKLWDPRSGSC---LATLHGHKNTVLAVK 271 (464)
T ss_pred --------Cc-----hhheeccCC-CCcceeccCCccceeE-EccCCc--eeEeecCCCcch---hhhhhhccceEEEEE
Confidence 22 556676665 7889999999755444 444433 788999999987 677777878888999
Q ss_pred EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCC
Q 039497 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV 570 (642)
Q Consensus 491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~ 570 (642)
|+|+|++|+..+.+.. +.++|+.+.+.-.... ++.. .+..+.|+|=..-|+.+....+
T Consensus 272 f~~n~N~Llt~skD~~--------~kv~DiR~mkEl~~~r-~Hkk-------dv~~~~WhP~~~~lftsgg~Dg------ 329 (464)
T KOG0284|consen 272 FNPNGNWLLTGSKDQS--------CKVFDIRTMKELFTYR-GHKK-------DVTSLTWHPLNESLFTSGGSDG------ 329 (464)
T ss_pred EcCCCCeeEEccCCce--------EEEEehhHhHHHHHhh-cchh-------hheeeccccccccceeeccCCC------
Confidence 9999999998887754 8899987433322221 3333 5678999999888877765443
Q ss_pred CCCCCCCCCCcEEEEEcCCCceeecc--CCCCCCCCcEEecCCceEEee
Q 039497 571 SWPNQFQPYGDLYVVKLDGSGLRRLT--WNGYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 571 ~~~~~~~~~~~l~~~~~~~~~~~~lt--~~~~~~~~~~~s~dg~~~~~~ 617 (642)
.|+.+.+...++.... .+...+.+++|+|=|-.|++.
T Consensus 330 ----------svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tg 368 (464)
T KOG0284|consen 330 ----------SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATG 368 (464)
T ss_pred ----------ceEEEeccccccccCCCcccccceeeeeccccceeEeec
Confidence 5555555533333222 356778899999999888775
No 83
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.36 E-value=3.3e-09 Score=107.98 Aligned_cols=524 Identities=13% Similarity=0.100 Sum_probs=251.5
Q ss_pred CCcceEEEEeecCCceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEE--EccCCCcceEEEcCCCC
Q 039497 2 EPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFI--SERSGSPRIYQTRPGSS 79 (642)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~--~~~~g~~~l~~~~~~g~ 79 (642)
.+++.++|. .+-.|-+.+-.- ....+.|-+|.+.+-..++- |+.+..+|. +..||...+|......-
T Consensus 23 ~~~~~vafG------a~~~Iav~dp~k----~~i~t~l~GH~a~VnC~~~l-~~s~~~a~~vsG~sD~~v~lW~l~~~~~ 91 (764)
T KOG1063|consen 23 GPGGLVAFG------AGPAIAVADPEK----ILIVTTLDGHVARVNCVHWL-PTSEIVAEMVSGDSDGRVILWKLRDEYL 91 (764)
T ss_pred cccceEEec------CCceEEEeCccc----ceeEEeccCCccceEEEEEc-ccccccceEEEccCCCcEEEEEEeehhe
Confidence 477888888 555565543322 03456677899999999999 999866653 34456777898742221
Q ss_pred cccccCCCCCCccccccccCCCE-EEEEEeccCCCcccccccceEEEEccCCc-----eEecccCCCccCCceeCCCCcE
Q 039497 80 KTELLPSIPCSLFHDRPVARNNK-LFFISAHEQPDQIFKSWSALYSTDLKASK-----FTRLTPYGVVDYSPSVSYSGKF 153 (642)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~lt~~~~~~~~~~~SPDG~~ 153 (642)
..+.+.+...- .-..+.... +.+.... +....+| +.+..+ ..+.........+.++.|+-+.
T Consensus 92 --~~i~~~~g~~~-~~~cv~a~~~~~~~~~a-------d~~v~vw--~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~ 159 (764)
T KOG1063|consen 92 --IKIYTIQGHCK-ECVCVVARSSVMTCKAA-------DGTVSVW--DKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKT 159 (764)
T ss_pred --EEEEeecCcce-eEEEEEeeeeEEEeecc-------CceEEEe--ecCCCceeeehheehhhhhHhhHHHhhhccCCc
Confidence 11111111000 001111221 2221111 1111344 433333 2233333344566677775555
Q ss_pred EEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC--Cc---ceEeeCC--eEEEEEecCCCceEEEEEecCCCc
Q 039497 154 IAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG--GW---PTWSGDS--TIYFHRQADDGWWSIFRVSFPENL 226 (642)
Q Consensus 154 la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~---~~wspdg--~~~~~~~~~~g~~~l~~~~~~~~~ 226 (642)
++.+.... ...|.++.-..++.+++..-.+ .| ++|..-+ .+++.+...|-..+||++-+.+..
T Consensus 160 ~lla~Ggs----------~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~ 229 (764)
T KOG1063|consen 160 FLLACGGS----------KFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDE 229 (764)
T ss_pred EEEEecCc----------ceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCc
Confidence 44443222 2344444444444555554333 23 4666444 455555466777899998877642
Q ss_pred ccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCC
Q 039497 227 EFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGEST 306 (642)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 306 (642)
. ...... ....-+++...+. . .. -...|.+--+..++...+....|.|++..|+..+.+..
T Consensus 230 --------~-~~~~e~----~~t~~~~~~~f~~-l-~~--i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDks-- 290 (764)
T KOG1063|consen 230 --------D-SNERED----SLTTLSNLPVFMI-L-EE--IQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKS-- 290 (764)
T ss_pred --------c-cccccc----ccccccCCceeee-e-ee--EEEEEehhhhhcCcccceEEEEEccchhhheecccCcc--
Confidence 1 111000 0111112111111 0 00 00122222335567777778889999977777766555
Q ss_pred CCCcccceEeeccCC--CceeEEeeeCC-----CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCc
Q 039497 307 EGQSTIPHLEPVASP--VKELRMLRLNG-----SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTA 375 (642)
Q Consensus 307 ~~~~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~ 375 (642)
.++|....+.. ...+.+....+ ....|+|+++.|+-.+. .+.-++|. +.+.....+... -..+
T Consensus 291 ----miiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~-~Gg~hlWk-t~d~~~w~~~~~iSGH~~~V 364 (764)
T KOG1063|consen 291 ----MIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR-TGGFHLWK-TKDKTFWTQEPVISGHVDGV 364 (764)
T ss_pred ----eEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecc-cCcEEEEe-ccCccceeeccccccccccc
Confidence 34443332211 11222222221 23579999986665443 55566666 233333233222 4568
Q ss_pred eeeeeecCCCEEEEEEcCC---Cccc----------CCCeEEEEEEEee---c-CCCCCCCCCccccceEEccccCCC--
Q 039497 376 FYNSWSPTEKHVIYTSTGP---IFQS----------ERATVQIARVSFQ---L-DPSDDNNREEIPCDVKILTKEETG-- 436 (642)
Q Consensus 376 ~~~~~spdg~~l~~~~~~~---~~~~----------~~~~~~l~~~~~~---~-~~~~~~~~~~~~~~~~~l~~~~~~-- 436 (642)
.++.|+|.|++|+.++... +|.. .+.+++=|++.-. . +..+..+..+ ++.+....+..
T Consensus 365 ~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdE---KVlRvF~aPk~fv 441 (764)
T KOG1063|consen 365 KDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADE---KVLRVFEAPKSFV 441 (764)
T ss_pred eeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccc---eeeeeecCcHHHH
Confidence 8999999999998877531 0100 1122222222110 0 0000001111 11111111100
Q ss_pred ---------CccCcEECCCCCeEEE--EeCCCCceeEEEEECCCCcc-------------------c-----------cc
Q 039497 437 ---------NNAFPSCSPDGKFLVF--RSGRSGHKNLFVLDAVNGEF-------------------N-----------GD 475 (642)
Q Consensus 437 ---------~~~~~~~SpDg~~l~~--~~~~~g~~~l~~~d~~~g~~-------------------~-----------~~ 475 (642)
......-.|+|--+=. .+++ .++.-+..+|.. + -+
T Consensus 442 ~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnK----a~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPE 517 (764)
T KOG1063|consen 442 KSLMAICGKCFKGSDELPDGANVPALGLSNK----AFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPE 517 (764)
T ss_pred HHHHHHhCccccCchhcccccccccccccCC----CCcccccccccccceeeecccccCchhccCCChHHHHHHhccchh
Confidence 0001112233221111 1111 111111112211 0 01
Q ss_pred eeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEE-eeecCCCCCCCcccccccceEEcCCCC
Q 039497 476 IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR-IHVAGPEGSGDVDRERINHVCFSADGE 554 (642)
Q Consensus 476 ~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~S~Dg~ 554 (642)
++.|..+...+..++.||+|+.|+........ ....|++|+..+=.... |. .+.- -++.+.|||||+
T Consensus 518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~---ehAvI~lw~t~~W~~~~~L~--~HsL-------TVT~l~FSpdg~ 585 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISPTGNLIASACKSSLK---EHAVIRLWNTANWLQVQELE--GHSL-------TVTRLAFSPDGR 585 (764)
T ss_pred hHHhccCceeEEEEEecCCCCEEeehhhhCCc---cceEEEEEeccchhhhheec--ccce-------EEEEEEECCCCc
Confidence 23334445566778999999988877665533 67789999876533332 32 2222 468899999999
Q ss_pred EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee---eccCCCCCCCCcEEecCCceEEee
Q 039497 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR---RLTWNGYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~lt~~~~~~~~~~~s~dg~~~~~~ 617 (642)
+|+..+.+-. ..||..-.+-..-. .+..+...+.+..|+||+.+|++.
T Consensus 586 ~LLsvsRDRt---------------~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTa 636 (764)
T KOG1063|consen 586 YLLSVSRDRT---------------VSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATA 636 (764)
T ss_pred EEEEeecCce---------------EEeeeeecccchhhhhccccccceEEEEcccCcccceeEEe
Confidence 9998886642 25665422111111 244455666789999999998875
No 84
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.36 E-value=1.8e-10 Score=123.10 Aligned_cols=299 Identities=18% Similarity=0.070 Sum_probs=168.5
Q ss_pred eEeeCCeEEEEEe-cCCCceEEEEEecCCCcccccC---CccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEE
Q 039497 197 TWSGDSTIYFHRQ-ADDGWWSIFRVSFPENLEFLGF---PIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIE 272 (642)
Q Consensus 197 ~wspdg~~~~~~~-~~~g~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~ 272 (642)
.-+|||..+.+.. ..+|...||..+.-.......+ +.....+..+...+..+.|||||++||+ |+..+-+.
T Consensus 20 dv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs-----GSDD~~v~ 94 (942)
T KOG0973|consen 20 DVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS-----GSDDRLVM 94 (942)
T ss_pred EecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee-----ccCcceEE
Confidence 4567776666651 1344445676554332110000 0122334445557778889999999999 44445777
Q ss_pred EEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCC
Q 039497 273 IYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFEL 352 (642)
Q Consensus 273 ~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 352 (642)
+|+.... ......+|-.|.. .+..|-.. ..+.-.........|+||+.+++..+.
T Consensus 95 iW~~~~~---~~~~~fgs~g~~~--------------~vE~wk~~-----~~l~~H~~DV~Dv~Wsp~~~~lvS~s~--- 149 (942)
T KOG0973|consen 95 IWERAEI---GSGTVFGSTGGAK--------------NVESWKVV-----SILRGHDSDVLDVNWSPDDSLLVSVSL--- 149 (942)
T ss_pred Eeeeccc---CCccccccccccc--------------ccceeeEE-----EEEecCCCccceeccCCCccEEEEecc---
Confidence 7876321 1111122211110 01111111 001111122346799999998888754
Q ss_pred ceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497 353 NAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL 430 (642)
Q Consensus 353 ~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 430 (642)
.+.|.+++..+-+...... ...+-.+.|.|-|++++..+ ++..+.+|+... -+ ..+.+
T Consensus 150 DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqs-------dDrtikvwrt~d--------w~-----i~k~I 209 (942)
T KOG0973|consen 150 DNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQS-------DDRTLKVWRTSD--------WG-----IEKSI 209 (942)
T ss_pred cceEEEEccccceeeeeeecccccccceEECCccCeeeeec-------CCceEEEEEccc--------ce-----eeEee
Confidence 4778888887775444443 45677899999999999886 478999999532 12 33333
Q ss_pred cccCC-----CCccCcEECCCCCeEEEEeCC-CCceeEEEEECCCCccccceeeCCCCCCcccceeEec--------CCC
Q 039497 431 TKEET-----GNNAFPSCSPDGKFLVFRSGR-SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP--------KGD 496 (642)
Q Consensus 431 ~~~~~-----~~~~~~~~SpDg~~l~~~~~~-~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~sp--------dG~ 496 (642)
+.... .....+.|||||++|+....- .+...+-+++-++-+. -..|..+........|+| +|.
T Consensus 210 t~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~---~~~LvGH~~p~evvrFnP~lfe~~~~ng~ 286 (942)
T KOG0973|consen 210 TKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKV---DKDLVGHSAPVEVVRFNPKLFERNNKNGT 286 (942)
T ss_pred ccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCcee---eeeeecCCCceEEEEeChHHhccccccCC
Confidence 33220 245568999999999876532 3444666666544432 244555555555566665 111
Q ss_pred ---------EEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 497 ---------LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 497 ---------~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
.++..+.+. .|-+|.....++-.+...-.+. .+.+++|||||-.|+..+.++
T Consensus 287 ~~~~~~~y~i~AvgSqDr--------SlSVW~T~~~RPl~vi~~lf~~-------SI~DmsWspdG~~LfacS~DG 347 (942)
T KOG0973|consen 287 STQPNCYYCIAAVGSQDR--------SLSVWNTALPRPLFVIHNLFNK-------SIVDMSWSPDGFSLFACSLDG 347 (942)
T ss_pred ccCCCcceEEEEEecCCc--------cEEEEecCCCCchhhhhhhhcC-------ceeeeeEcCCCCeEEEEecCC
Confidence 122333332 3777775433332222222222 578999999999999999887
No 85
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.3e-09 Score=101.17 Aligned_cols=274 Identities=15% Similarity=0.191 Sum_probs=168.0
Q ss_pred CCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC
Q 039497 241 PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS 320 (642)
Q Consensus 241 ~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 320 (642)
....+..+.++++|..|+.+..+. .+.+||...+. .+-.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dD-----sl~LYd~~~g~--------------~~~t---------------------- 51 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDD-----SLRLYDSLSGK--------------QVKT---------------------- 51 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCC-----eEEEEEcCCCc--------------eeeE----------------------
Confidence 356788888999999888855443 78888873221 1111
Q ss_pred CCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCccc
Q 039497 321 PVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQS 398 (642)
Q Consensus 321 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~ 398 (642)
+....+......|....+.+.+.+. -....|..+++...+-.+... ...+..+..+|-+..++-.+.
T Consensus 52 ----i~skkyG~~~~~Fth~~~~~i~sSt-k~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~------ 120 (311)
T KOG1446|consen 52 ----INSKKYGVDLACFTHHSNTVIHSST-KEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSL------ 120 (311)
T ss_pred ----eecccccccEEEEecCCceEEEccC-CCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEeccc------
Confidence 1111122223355444555555443 234678888887776555444 556888999998887776654
Q ss_pred CCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee
Q 039497 399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ 478 (642)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~ 478 (642)
+..+++|++.. . . ..-.+... ...-++|.|.|-.+|.+... ..|.++|+..=.. ++-..
T Consensus 121 -D~tvrLWDlR~--~------~-----cqg~l~~~---~~pi~AfDp~GLifA~~~~~---~~IkLyD~Rs~dk-gPF~t 179 (311)
T KOG1446|consen 121 -DKTVRLWDLRV--K------K-----CQGLLNLS---GRPIAAFDPEGLIFALANGS---ELIKLYDLRSFDK-GPFTT 179 (311)
T ss_pred -CCeEEeeEecC--C------C-----CceEEecC---CCcceeECCCCcEEEEecCC---CeEEEEEecccCC-CCcee
Confidence 78999999986 2 2 22222221 22347899999666655532 2788888753110 00122
Q ss_pred C--C-CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCE
Q 039497 479 L--T-DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW 555 (642)
Q Consensus 479 l--~-~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~ 555 (642)
+ . ........+.|||||++|+...+.+. ++++|.-.|....-....... ..-.....|+|||+.
T Consensus 180 f~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~--------~~~lDAf~G~~~~tfs~~~~~-----~~~~~~a~ftPds~F 246 (311)
T KOG1446|consen 180 FSITDNDEAEWTDLEFSPDGKSILLSTNASF--------IYLLDAFDGTVKSTFSGYPNA-----GNLPLSATFTPDSKF 246 (311)
T ss_pred EccCCCCccceeeeEEcCCCCEEEEEeCCCc--------EEEEEccCCcEeeeEeeccCC-----CCcceeEEECCCCcE
Confidence 2 2 12334567899999999999887664 899998777643322211111 012357899999999
Q ss_pred EEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceee-ccC-CCCCCCCcEEecCCceEEee
Q 039497 556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR-LTW-NGYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 556 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-lt~-~~~~~~~~~~s~dg~~~~~~ 617 (642)
|+..+.++ .|++|++..+.... +.. ..+...-+.|.|.--.+++.
T Consensus 247 vl~gs~dg-----------------~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa 293 (311)
T KOG1446|consen 247 VLSGSDDG-----------------TIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA 293 (311)
T ss_pred EEEecCCC-----------------cEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec
Confidence 88887765 78999988776443 333 23445566788876555554
No 86
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.35 E-value=5.9e-11 Score=109.17 Aligned_cols=164 Identities=17% Similarity=0.138 Sum_probs=112.6
Q ss_pred ccEEcCCCCEEEEEecC---------CCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCe
Q 039497 334 FPSFSPDGGLIVFNHDF---------ELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERAT 402 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~---------~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 402 (642)
.+.|+|+|+.|++.... -+...||.++..+.....+.. .+.+.+++|+|+|+.++++.. .....
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g-----~~~~~ 84 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYG-----SMPAK 84 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEc-----cCCcc
Confidence 45899999999885441 234678888877766555544 446999999999999988753 12447
Q ss_pred EEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC
Q 039497 403 VQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG 482 (642)
Q Consensus 403 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~ 482 (642)
+.||++.. . ....+.. .....+.|||+|++|+.++..+....|.+||..+.+. +.... +
T Consensus 85 v~lyd~~~--~------------~i~~~~~---~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~---i~~~~-~ 143 (194)
T PF08662_consen 85 VTLYDVKG--K------------KIFSFGT---QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK---ISTFE-H 143 (194)
T ss_pred cEEEcCcc--c------------EeEeecC---CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE---eeccc-c
Confidence 88888854 2 4444432 3445689999999999988655556899999986653 22222 2
Q ss_pred CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE
Q 039497 483 PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526 (642)
Q Consensus 483 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 526 (642)
.....+.|||||++|+....... ....+.+.+|+..|....
T Consensus 144 -~~~t~~~WsPdGr~~~ta~t~~r--~~~dng~~Iw~~~G~~l~ 184 (194)
T PF08662_consen 144 -SDATDVEWSPDGRYLATATTSPR--LRVDNGFKIWSFQGRLLY 184 (194)
T ss_pred -CcEEEEEEcCCCCEEEEEEeccc--eeccccEEEEEecCeEeE
Confidence 34577899999999998876421 113355777777665443
No 87
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.34 E-value=7.9e-10 Score=101.60 Aligned_cols=279 Identities=13% Similarity=0.083 Sum_probs=178.4
Q ss_pred cccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCcee--EeecCCC--cceEeeCCeEEEEEec
Q 039497 135 LTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRV--IVCERGG--WPTWSGDSTIYFHRQA 210 (642)
Q Consensus 135 lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--l~~~~~~--~~~wspdg~~~~~~~~ 210 (642)
+..+.+......|+|||.++|....+. .|++|++-+...-. +....+. .+.|++|+..+++. +
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr------------~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~-g 109 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDR------------AIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSC-G 109 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcc------------eEEEEeccccccceeeeccccceeEeeeeccCCCEEEEe-c
Confidence 344555566789999999999887766 79999976654322 2222222 35999999888887 3
Q ss_pred CCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeec
Q 039497 211 DDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVS 290 (642)
Q Consensus 211 ~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~s 290 (642)
.|- .++.+|..+|+ ...+...+..-+.....+--|-.|+... +...++.+||+......
T Consensus 110 tDk--~v~~wD~~tG~-------~~rk~k~h~~~vNs~~p~rrg~~lv~Sg----sdD~t~kl~D~R~k~~~-------- 168 (338)
T KOG0265|consen 110 TDK--TVRGWDAETGK-------RIRKHKGHTSFVNSLDPSRRGPQLVCSG----SDDGTLKLWDIRKKEAI-------- 168 (338)
T ss_pred CCc--eEEEEecccce-------eeehhccccceeeecCccccCCeEEEec----CCCceEEEEeecccchh--------
Confidence 444 77888888885 5555555543333333333455555432 33447888887321100
Q ss_pred CCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEe
Q 039497 291 ANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI 370 (642)
Q Consensus 291 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~ 370 (642)
+....+.+++ .+.|..++..+....- .+.|-++|+..+....+.
T Consensus 169 ----------------------------~t~~~kyqlt-----Av~f~d~s~qv~sggI---dn~ikvWd~r~~d~~~~l 212 (338)
T KOG0265|consen 169 ----------------------------KTFENKYQLT-----AVGFKDTSDQVISGGI---DNDIKVWDLRKNDGLYTL 212 (338)
T ss_pred ----------------------------hccccceeEE-----EEEecccccceeeccc---cCceeeeccccCcceEEe
Confidence 0000111222 4467777777665332 356777788666655555
Q ss_pred e--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccc-eEEccccC---CCCccCcEEC
Q 039497 371 K--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD-VKILTKEE---TGNNAFPSCS 444 (642)
Q Consensus 371 ~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~---~~~~~~~~~S 444 (642)
. ...+..+..||+|.++.--+- +..+++|++..- . ++. . ......+. .......+||
T Consensus 213 sGh~DtIt~lsls~~gs~llsnsM-------d~tvrvwd~rp~-~----p~~-----R~v~if~g~~hnfeknlL~csws 275 (338)
T KOG0265|consen 213 SGHADTITGLSLSRYGSFLLSNSM-------DNTVRVWDVRPF-A----PSQ-----RCVKIFQGHIHNFEKNLLKCSWS 275 (338)
T ss_pred ecccCceeeEEeccCCCccccccc-------cceEEEEEeccc-C----CCC-----ceEEEeecchhhhhhhcceeecc
Confidence 4 567889999999998876543 788999998651 1 111 2 22222111 0122346999
Q ss_pred CCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCC
Q 039497 445 PDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHN 506 (642)
Q Consensus 445 pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~ 506 (642)
|+++++.+.+. +..+|+||..+... +..|..+.+.+...+|+|....|...+.+.+
T Consensus 276 p~~~~i~ags~---dr~vyvwd~~~r~~---lyklpGh~gsvn~~~Fhp~e~iils~~sdk~ 331 (338)
T KOG0265|consen 276 PNGTKITAGSA---DRFVYVWDTTSRRI---LYKLPGHYGSVNEVDFHPTEPIILSCSSDKT 331 (338)
T ss_pred CCCCccccccc---cceEEEeecccccE---EEEcCCcceeEEEeeecCCCcEEEEeccCce
Confidence 99999988773 45899999987565 6888888889999999999998887777654
No 88
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.33 E-value=1.3e-09 Score=123.84 Aligned_cols=225 Identities=11% Similarity=0.092 Sum_probs=143.4
Q ss_pred ccEEcCC-CCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeec-CCCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497 334 FPSFSPD-GGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIARVS 409 (642)
Q Consensus 334 ~~~~spd-g~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~ 409 (642)
...|++. +++|+.... ...|.++|+.+++...... ...+..+.|+| ++..|+..+ .++.+++|++.
T Consensus 537 ~l~~~~~~~~~las~~~---Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs-------~Dg~v~iWd~~ 606 (793)
T PLN00181 537 GICWNSYIKSQVASSNF---EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS-------DDGSVKLWSIN 606 (793)
T ss_pred eEEeccCCCCEEEEEeC---CCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEc-------CCCEEEEEECC
Confidence 4477764 566665443 4678888988765443332 56688999997 677776665 37899999986
Q ss_pred eecCCCCCCCCCccccceEEccccCCCCccCcEE-CCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccc
Q 039497 410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSC-SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTM 488 (642)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~ 488 (642)
. +. ....+... ..+..+.| +++|+.|+..+. +..|++||+.+++. ....+..+...+..
T Consensus 607 ~--------~~-----~~~~~~~~--~~v~~v~~~~~~g~~latgs~---dg~I~iwD~~~~~~--~~~~~~~h~~~V~~ 666 (793)
T PLN00181 607 Q--------GV-----SIGTIKTK--ANICCVQFPSESGRSLAFGSA---DHKVYYYDLRNPKL--PLCTMIGHSKTVSY 666 (793)
T ss_pred C--------Cc-----EEEEEecC--CCeEEEEEeCCCCCEEEEEeC---CCeEEEEECCCCCc--cceEecCCCCCEEE
Confidence 5 22 33333322 34556777 567888887763 34899999976541 13455556566778
Q ss_pred eeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc----eEEee-ecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG----LRRIH-VAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 489 ~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~----~~~l~-~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
+.|+ ++.+|+..+.++. |.+||+..+. ...+. ..++.. .+..+.|++++++|+..+.++
T Consensus 667 v~f~-~~~~lvs~s~D~~--------ikiWd~~~~~~~~~~~~l~~~~gh~~-------~i~~v~~s~~~~~lasgs~D~ 730 (793)
T PLN00181 667 VRFV-DSSTLVSSSTDNT--------LKLWDLSMSISGINETPLHSFMGHTN-------VKNFVGLSVSDGYIATGSETN 730 (793)
T ss_pred EEEe-CCCEEEEEECCCE--------EEEEeCCCCccccCCcceEEEcCCCC-------CeeEEEEcCCCCEEEEEeCCC
Confidence 8897 7788887776654 8899986421 11121 123333 456789999999888877654
Q ss_pred CcccCCCCCCCCCCCCCcEEEEEcCCCcee--------------eccCCCCCCCCcEEecCCceEEeecCCC
Q 039497 564 AVMAEPVSWPNQFQPYGDLYVVKLDGSGLR--------------RLTWNGYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------~lt~~~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
.|++|+.....+. .+..+...+.++.|+|++..+++....|
T Consensus 731 -----------------~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG 785 (793)
T PLN00181 731 -----------------EVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTG 785 (793)
T ss_pred -----------------EEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCC
Confidence 6777765443211 0111223457889999999888776555
No 89
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.32 E-value=1.9e-09 Score=122.33 Aligned_cols=285 Identities=13% Similarity=0.164 Sum_probs=170.4
Q ss_pred CCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCC----c-----eeEeecCC-CcceEeeC-CeEEE
Q 039497 138 YGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPN----K-----RVIVCERG-GWPTWSGD-STIYF 206 (642)
Q Consensus 138 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~-----~~l~~~~~-~~~~wspd-g~~~~ 206 (642)
+.......+|+|||++||.+..+. .|.+|+..... . ..+..... ....|++. +.+++
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~------------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~la 549 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNK------------KIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVA 549 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCC------------EEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEE
Confidence 334456689999999999887665 67888865321 0 01111111 24589875 46666
Q ss_pred EEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeec-CCcEEEEEEeccCCceeeEEEEEeecCCCCccc
Q 039497 207 HRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFH-DGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHY 285 (642)
Q Consensus 207 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp-dG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 285 (642)
+. ..+|...|| +..++. ....+..+...+..++|+| +|..|+....+ ..+.+||+...
T Consensus 550 s~-~~Dg~v~lW--d~~~~~-------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D-----g~v~iWd~~~~------ 608 (793)
T PLN00181 550 SS-NFEGVVQVW--DVARSQ-------LVTEMKEHEKRVWSIDYSSADPTLLASGSDD-----GSVKLWSINQG------ 608 (793)
T ss_pred EE-eCCCeEEEE--ECCCCe-------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCC-----CEEEEEECCCC------
Confidence 66 567855555 555542 4455666666788899986 78877775443 38999997321
Q ss_pred CCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEE-cCCCCEEEEEecCCCceeEEEEECCCC
Q 039497 286 NPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSF-SPDGGLIVFNHDFELNAGIKIAKSDGS 364 (642)
Q Consensus 286 ~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~~~l~~~d~~~~ 364 (642)
..+.... .. .......| +++|+.|+..+. ...|+++|+...
T Consensus 609 --------~~~~~~~-------------------~~--------~~v~~v~~~~~~g~~latgs~---dg~I~iwD~~~~ 650 (793)
T PLN00181 609 --------VSIGTIK-------------------TK--------ANICCVQFPSESGRSLAFGSA---DHKVYYYDLRNP 650 (793)
T ss_pred --------cEEEEEe-------------------cC--------CCeEEEEEeCCCCCEEEEEeC---CCeEEEEECCCC
Confidence 1111100 00 00112355 467888877653 468888998765
Q ss_pred Ce-e-EEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCc
Q 039497 365 KR-W-TLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFP 441 (642)
Q Consensus 365 ~~-~-~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 441 (642)
.. . .+.. ...+..+.|. ++..|+..+. ++.++||++.. ........ ....+..+. .....+
T Consensus 651 ~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~-------D~~ikiWd~~~--~~~~~~~~-----~l~~~~gh~-~~i~~v 714 (793)
T PLN00181 651 KLPLCTMIGHSKTVSYVRFV-DSSTLVSSST-------DNTLKLWDLSM--SISGINET-----PLHSFMGHT-NVKNFV 714 (793)
T ss_pred CccceEecCCCCCEEEEEEe-CCCEEEEEEC-------CCEEEEEeCCC--CccccCCc-----ceEEEcCCC-CCeeEE
Confidence 42 1 2221 4567788897 7777777663 78899999864 10000001 344555544 555678
Q ss_pred EECCCCCeEEEEeCCCCceeEEEEECCCCcccc--------cee--eCCCCCCcccceeEecCCCEEEEEecCCCCCCCC
Q 039497 442 SCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG--------DIR--QLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVE 511 (642)
Q Consensus 442 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~--------~~~--~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~ 511 (642)
.|+|+|++|+..+.+ ..|++|+...+.... .+. .+......+..+.|+|+|+.|+..+.++.
T Consensus 715 ~~s~~~~~lasgs~D---~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~----- 786 (793)
T PLN00181 715 GLSVSDGYIATGSET---NEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGN----- 786 (793)
T ss_pred EEcCCCCEEEEEeCC---CEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCc-----
Confidence 999999988877743 378888876443100 000 01112234677899999998888877664
Q ss_pred ceeEEEEeC
Q 039497 512 AFSLYVIKP 520 (642)
Q Consensus 512 ~~~l~~~d~ 520 (642)
|.+|++
T Consensus 787 ---I~i~~~ 792 (793)
T PLN00181 787 ---IKILEM 792 (793)
T ss_pred ---EEEEec
Confidence 777765
No 90
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.31 E-value=1.7e-08 Score=99.97 Aligned_cols=287 Identities=13% Similarity=0.077 Sum_probs=156.5
Q ss_pred cceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCcee-EeecCC-----
Q 039497 120 SALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRV-IVCERG----- 193 (642)
Q Consensus 120 ~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-l~~~~~----- 193 (642)
+.++.+|.++++...-...+..... .+||||+.|+.+....++ +.+......|-++|+++.+... |..+..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~~spDg~~lyva~~~~~R--~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-VVASDGSFFAHASTVYSR--IARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-eECCCCCEEEEEeccccc--cccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 4799999998876543333333333 499999999877652110 1111234578899999988653 332211
Q ss_pred ----CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCcee
Q 039497 194 ----GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFR 269 (642)
Q Consensus 194 ----~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~ 269 (642)
...+.||||+.+|+.+ .+....+-.+|+.+++ ....+.- |++..++.+....
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n-~~p~~~V~VvD~~~~k-------vv~ei~v-----------p~~~~vy~t~e~~----- 159 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQ-FSPSPAVGVVDLEGKA-------FVRMMDV-----------PDCYHIFPTANDT----- 159 (352)
T ss_pred cCccceEEECCCCCEEEEec-CCCCCEEEEEECCCCc-------EEEEEeC-----------CCCcEEEEecCCc-----
Confidence 1458999999888774 2223377888888773 2222222 5655544432221
Q ss_pred eEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcC-CCCEEEEEe
Q 039497 270 HIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSP-DGGLIVFNH 348 (642)
Q Consensus 270 ~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~ 348 (642)
....+.||+.+.+........ ........+.. . ..-...|.+++ ||+ .+|++
T Consensus 160 ----------------~~~~~~Dg~~~~v~~d~~g~~----~~~~~~vf~~~--~----~~v~~rP~~~~~dg~-~~~vs 212 (352)
T TIGR02658 160 ----------------FFMHCRDGSLAKVGYGTKGNP----KIKPTEVFHPE--D----EYLINHPAYSNKSGR-LVWPT 212 (352)
T ss_pred ----------------cEEEeecCceEEEEecCCCce----EEeeeeeecCC--c----cccccCCceEcCCCc-EEEEe
Confidence 123456666555443222210 00000000000 0 00113445666 776 55555
Q ss_pred cCCCceeEEEEECCCCCeeEEee--------------cCCceeeeeecCCCEEEEEEcCCC-cccCCCeEEEEEEEeecC
Q 039497 349 DFELNAGIKIAKSDGSKRWTLIK--------------DRTAFYNSWSPTEKHVIYTSTGPI-FQSERATVQIARVSFQLD 413 (642)
Q Consensus 349 ~~~~~~~l~~~d~~~~~~~~l~~--------------~~~~~~~~~spdg~~l~~~~~~~~-~~~~~~~~~l~~~~~~~~ 413 (642)
.. +.|+++|+.+........ .+....++++|||+++++...+.. ..-..+.-++|.++. .
T Consensus 213 ~e---G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~--~ 287 (352)
T TIGR02658 213 YT---GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA--K 287 (352)
T ss_pred cC---CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC--C
Confidence 43 889999976554332211 122334899999999998653211 001122335666655 2
Q ss_pred CCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC
Q 039497 414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT 480 (642)
Q Consensus 414 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~ 480 (642)
+++ ....+..+ .....+++||||+.++|..+. ....|.++|..+++. ++.+.
T Consensus 288 -----t~k----vi~~i~vG--~~~~~iavS~Dgkp~lyvtn~-~s~~VsViD~~t~k~---i~~i~ 339 (352)
T TIGR02658 288 -----TGK----RLRKIELG--HEIDSINVSQDAKPLLYALST-GDKTLYIFDAETGKE---LSSVN 339 (352)
T ss_pred -----CCe----EEEEEeCC--CceeeEEECCCCCeEEEEeCC-CCCcEEEEECcCCeE---Eeeec
Confidence 221 34444433 367789999999955555543 234799999999876 55553
No 91
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.30 E-value=4e-10 Score=103.53 Aligned_cols=282 Identities=13% Similarity=0.020 Sum_probs=185.1
Q ss_pred eeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceE
Q 039497 236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHL 315 (642)
Q Consensus 236 ~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~ 315 (642)
..+..+...+....|+|||..++. ++....|.+|++.... + ..|.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aS-----gG~Dr~I~LWnv~gdc---------------------e---------N~~~ 85 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFAS-----GGSDRAIVLWNVYGDC---------------------E---------NFWV 85 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEee-----cCCcceEEEEeccccc---------------------c---------ceee
Confidence 455666778889999999999888 4555688888862111 0 0010
Q ss_pred eeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcC
Q 039497 316 EPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTG 393 (642)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~ 393 (642)
. ++ .........|++|++.|+..+. ...|+.+|+++++...--. ...+..+.-+.-|-.++...
T Consensus 86 l--kg-------HsgAVM~l~~~~d~s~i~S~gt---Dk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~Sg-- 151 (338)
T KOG0265|consen 86 L--KG-------HSGAVMELHGMRDGSHILSCGT---DKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSG-- 151 (338)
T ss_pred e--cc-------ccceeEeeeeccCCCEEEEecC---CceEEEEecccceeeehhccccceeeecCccccCCeEEEec--
Confidence 0 00 0111134588999998877653 4789999999887544322 23344444333455555554
Q ss_pred CCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccc
Q 039497 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473 (642)
Q Consensus 394 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~ 473 (642)
.++.+++||++.. + . .++.+. .. .....+.|..++..+....-+ .+|-+||+..+..
T Consensus 152 ----sdD~t~kl~D~R~--k------~-----~~~t~~-~k-yqltAv~f~d~s~qv~sggId---n~ikvWd~r~~d~- 208 (338)
T KOG0265|consen 152 ----SDDGTLKLWDIRK--K------E-----AIKTFE-NK-YQLTAVGFKDTSDQVISGGID---NDIKVWDLRKNDG- 208 (338)
T ss_pred ----CCCceEEEEeecc--c------c-----hhhccc-cc-eeEEEEEecccccceeecccc---CceeeeccccCcc-
Confidence 4689999999976 2 1 222222 22 466778899888887655432 3688899876654
Q ss_pred cceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC--ceEEeee-cCCCCCCCcccccccceEEc
Q 039497 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS--GLRRIHV-AGPEGSGDVDRERINHVCFS 550 (642)
Q Consensus 474 ~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~-~~~~~~~~~~~~~~~~~~~S 550 (642)
...+..+...+.++..||+|.++.-.+.+.. +.+||+.-- ..+.+.. .+... +-.......+||
T Consensus 209 --~~~lsGh~DtIt~lsls~~gs~llsnsMd~t--------vrvwd~rp~~p~~R~v~if~g~~h---nfeknlL~csws 275 (338)
T KOG0265|consen 209 --LYTLSGHADTITGLSLSRYGSFLLSNSMDNT--------VRVWDVRPFAPSQRCVKIFQGHIH---NFEKNLLKCSWS 275 (338)
T ss_pred --eEEeecccCceeeEEeccCCCccccccccce--------EEEEEecccCCCCceEEEeecchh---hhhhhcceeecc
Confidence 5667777778899999999999887776654 888887532 1221211 12111 000134567999
Q ss_pred CCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC-CceeeccCCCCCCCCcEEecCCceEEeecC
Q 039497 551 ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG-SGLRRLTWNGYENGTPAWHPGNQLDLGKLR 619 (642)
Q Consensus 551 ~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~ 619 (642)
|+++.+-+.+.+. .+|+||..+ .-+-.|..+.+.+....|+|....++++..
T Consensus 276 p~~~~i~ags~dr-----------------~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 276 PNGTKITAGSADR-----------------FVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSS 328 (338)
T ss_pred CCCCccccccccc-----------------eEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEecc
Confidence 9999998877653 799999877 446788888888899999999998887654
No 92
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=7e-10 Score=112.52 Aligned_cols=259 Identities=15% Similarity=0.137 Sum_probs=176.5
Q ss_pred ceEEEEccCCceEecccC-CCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeec-CC---Cc
Q 039497 121 ALYSTDLKASKFTRLTPY-GVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCE-RG---GW 195 (642)
Q Consensus 121 ~l~~~~~~~~~~~~lt~~-~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~---~~ 195 (642)
.+|+.+..++.++.|... ........|+++|++||.....+ .|.+||.+..+..+-... +. +.
T Consensus 198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g------------~v~iwD~~~~k~~~~~~~~h~~rvg~ 265 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDG------------TVQIWDVKEQKKTRTLRGSHASRVGS 265 (484)
T ss_pred eEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCC------------eEEEEehhhccccccccCCcCceeEE
Confidence 577779999999998876 44567889999999999987655 799999887665444333 22 45
Q ss_pred ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEE
Q 039497 196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD 275 (642)
Q Consensus 196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d 275 (642)
.+|. +.++.+. ..++.+..+.+..... ....+..+..++-.+.|++||+++|. |+....+.+||
T Consensus 266 laW~--~~~lssG-sr~~~I~~~dvR~~~~--------~~~~~~~H~qeVCgLkws~d~~~lAS-----GgnDN~~~Iwd 329 (484)
T KOG0305|consen 266 LAWN--SSVLSSG-SRDGKILNHDVRISQH--------VVSTLQGHRQEVCGLKWSPDGNQLAS-----GGNDNVVFIWD 329 (484)
T ss_pred Eecc--CceEEEe-cCCCcEEEEEEecchh--------hhhhhhcccceeeeeEECCCCCeecc-----CCCccceEecc
Confidence 6887 3455554 4567555555443332 22235566667888999999999998 44555788887
Q ss_pred eecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCcee
Q 039497 276 LTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG 355 (642)
Q Consensus 276 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 355 (642)
..... ....+.. .......++|+|=..-|+-.+.+.....
T Consensus 330 ~~~~~------------------------------p~~~~~~----------H~aAVKA~awcP~q~~lLAsGGGs~D~~ 369 (484)
T KOG0305|consen 330 GLSPE------------------------------PKFTFTE----------HTAAVKALAWCPWQSGLLATGGGSADRC 369 (484)
T ss_pred CCCcc------------------------------ccEEEec----------cceeeeEeeeCCCccCceEEcCCCcccE
Confidence 61100 0000000 0111124588886655666555566788
Q ss_pred EEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC
Q 039497 356 IKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE 434 (642)
Q Consensus 356 l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 434 (642)
|..+|..++....... ...+..+.|++..+.|+.+.. .....+.||.... - . ....+..+.
T Consensus 370 i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG-----~s~n~i~lw~~ps--~------~-----~~~~l~gH~ 431 (484)
T KOG0305|consen 370 IKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHG-----YSENQITLWKYPS--M------K-----LVAELLGHT 431 (484)
T ss_pred EEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecC-----CCCCcEEEEeccc--c------c-----eeeeecCCc
Confidence 9999998877555444 667899999999998887754 3466889999865 1 1 566677776
Q ss_pred CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC
Q 039497 435 TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN 469 (642)
Q Consensus 435 ~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~ 469 (642)
..+.++++||||..|+.++.+ ..|..|++-+
T Consensus 432 -~RVl~la~SPdg~~i~t~a~D---ETlrfw~~f~ 462 (484)
T KOG0305|consen 432 -SRVLYLALSPDGETIVTGAAD---ETLRFWNLFD 462 (484)
T ss_pred -ceeEEEEECCCCCEEEEeccc---CcEEeccccC
Confidence 789999999999999988743 4677777654
No 93
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=3.8e-09 Score=95.81 Aligned_cols=275 Identities=14% Similarity=0.118 Sum_probs=160.4
Q ss_pred cccCCCccCCceeCCC-CcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCce---eEeec-CC---CcceEeeCCeEEE
Q 039497 135 LTPYGVVDYSPSVSYS-GKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKR---VIVCE-RG---GWPTWSGDSTIYF 206 (642)
Q Consensus 135 lt~~~~~~~~~~~SPD-G~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~l~~~-~~---~~~~wspdg~~~~ 206 (642)
+..+.......+|.|- |..||..+.+. .|.+|+..++..- .+... +. ...+|+|.|++++
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk------------~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La 77 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDK------------AVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLA 77 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCc------------eEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEE
Confidence 3333444455788887 88888777655 6888888754322 12211 11 2579999999888
Q ss_pred EEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccC
Q 039497 207 HRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYN 286 (642)
Q Consensus 207 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 286 (642)
++ ..+.+..||.-.-..- +....|.++..++..++||++|.+||.+++.+ .+|+|..........
T Consensus 78 ~a-SFD~t~~Iw~k~~~ef-------ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDK-----SVWiWe~deddEfec-- 142 (312)
T KOG0645|consen 78 SA-SFDATVVIWKKEDGEF-------ECVATLEGHENEVKCVAWSASGNYLATCSRDK-----SVWIWEIDEDDEFEC-- 142 (312)
T ss_pred Ee-eccceEEEeecCCCce-------eEEeeeeccccceeEEEEcCCCCEEEEeeCCC-----eEEEEEecCCCcEEE--
Confidence 77 5677777876442221 14556778888899999999999999998877 799998742221111
Q ss_pred CeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCe
Q 039497 287 PFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR 366 (642)
Q Consensus 287 ~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~ 366 (642)
++. |+..........|+|....|+-.++ ++...+|.-.. ...-
T Consensus 143 ---------~aV--------------------------L~~HtqDVK~V~WHPt~dlL~S~SY-DnTIk~~~~~~-dddW 185 (312)
T KOG0645|consen 143 ---------IAV--------------------------LQEHTQDVKHVIWHPTEDLLFSCSY-DNTIKVYRDED-DDDW 185 (312)
T ss_pred ---------Eee--------------------------eccccccccEEEEcCCcceeEEecc-CCeEEEEeecC-CCCe
Confidence 000 0011112235589998876655554 44445554332 3322
Q ss_pred --eEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcE
Q 039497 367 --WTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPS 442 (642)
Q Consensus 367 --~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 442 (642)
.+... ...+..+.|.|.|.+|+.++. +..+.||.... + ...+. .+..+.+.
T Consensus 186 ~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd-------D~tv~Iw~~~~--~-------------~~~~~---sr~~Y~v~ 240 (312)
T KOG0645|consen 186 ECVQTLDGHENTVWSLAFDNIGSRLVSCSD-------DGTVSIWRLYT--D-------------LSGMH---SRALYDVP 240 (312)
T ss_pred eEEEEecCccceEEEEEecCCCceEEEecC-------CcceEeeeecc--C-------------cchhc---ccceEeee
Confidence 22222 347889999999999998874 78899998644 1 11111 13455566
Q ss_pred ECCCCCeEEEEeCCCCceeEEEEEC--CCCccccceeeC----CCCCCcccceeEecCC-CEEEEEecCC
Q 039497 443 CSPDGKFLVFRSGRSGHKNLFVLDA--VNGEFNGDIRQL----TDGPWIDTMPSWSPKG-DLIAFSSNRH 505 (642)
Q Consensus 443 ~SpDg~~l~~~~~~~g~~~l~~~d~--~~g~~~~~~~~l----~~~~~~~~~~~~spdG-~~l~~~~~~~ 505 (642)
|- +| .|+ +...++...||.-.. +... ...+ ..+...+++++|.|.+ ++|+..++++
T Consensus 241 W~-~~-~Ia-S~ggD~~i~lf~~s~~~d~p~----~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG 303 (312)
T KOG0645|consen 241 WD-NG-VIA-SGGGDDAIRLFKESDSPDEPS----WNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDG 303 (312)
T ss_pred ec-cc-ceE-eccCCCEEEEEEecCCCCCch----HHHHHhhhcccccccceEEEcCCCCCceeecCCCc
Confidence 76 33 333 333333334444331 1111 1222 2244577899999964 4454444443
No 94
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.29 E-value=1.1e-09 Score=111.08 Aligned_cols=324 Identities=16% Similarity=0.159 Sum_probs=159.6
Q ss_pred eeeEEEEEecCCCceeEeecCCC---cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccc
Q 039497 172 NTDIVVFQESDPNKRVIVCERGG---WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTP 248 (642)
Q Consensus 172 ~~~l~~~~~~~g~~~~l~~~~~~---~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 248 (642)
...|.++|.++.+.......... .+.++|||+.+|+.+ .+| .|..+|+.+.+ ...++. .+.....+
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~-rdg--~vsviD~~~~~-------~v~~i~-~G~~~~~i 83 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVAN-RDG--TVSVIDLATGK-------VVATIK-VGGNPRGI 83 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEE-TTS--EEEEEETTSSS-------EEEEEE--SSEEEEE
T ss_pred CCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEc-CCC--eEEEEECCccc-------EEEEEe-cCCCcceE
Confidence 34788999888775554443222 347899998888773 466 78889998873 333443 34456678
Q ss_pred eeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEe
Q 039497 249 AAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRML 328 (642)
Q Consensus 249 ~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (642)
++|+||++++.+....+ .+.++|..+.. .+..... +. .........
T Consensus 84 ~~s~DG~~~~v~n~~~~----~v~v~D~~tle--------------~v~~I~~-~~-----------~~~~~~~~R---- 129 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPG----TVSVIDAETLE--------------PVKTIPT-GG-----------MPVDGPESR---- 129 (369)
T ss_dssp EE--TTTEEEEEEEETT----EEEEEETTT----------------EEEEEE---E-----------E-TTTS-------
T ss_pred EEcCCCCEEEEEecCCC----ceeEecccccc--------------ceeeccc-cc-----------ccccccCCC----
Confidence 99999999988654433 66676652211 0000000 00 000000000
Q ss_pred eeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEE
Q 039497 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQI 405 (642)
Q Consensus 329 ~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l 405 (642)
...+.-+|....+++... ...+||++|........... ....+...|+|++++++..... ...+.+
T Consensus 130 ---v~aIv~s~~~~~fVv~lk--d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~------sn~i~v 198 (369)
T PF02239_consen 130 ---VAAIVASPGRPEFVVNLK--DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG------SNKIAV 198 (369)
T ss_dssp ---EEEEEE-SSSSEEEEEET--TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG------GTEEEE
T ss_pred ---ceeEEecCCCCEEEEEEc--cCCeEEEEEeccccccceeeecccccccccccCcccceeeecccc------cceeEE
Confidence 012344777776666543 25789999977654333222 5667889999999999887642 333333
Q ss_pred EEEEeecCCCCCCCCCccccceEEc-cccC---CCCccCcEECCCCCeEEEEeCCC-------CceeEEEEECCCCcccc
Q 039497 406 ARVSFQLDPSDDNNREEIPCDVKIL-TKEE---TGNNAFPSCSPDGKFLVFRSGRS-------GHKNLFVLDAVNGEFNG 474 (642)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~---~~~~~~~~~SpDg~~l~~~~~~~-------g~~~l~~~d~~~g~~~~ 474 (642)
++... + +...+ .... ...... ..+|..-.+....... +...+.+++..+.+.
T Consensus 199 iD~~~---------~-----k~v~~i~~g~~p~~~~~~~-~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv-- 261 (369)
T PF02239_consen 199 IDTKT---------G-----KLVALIDTGKKPHPGPGAN-FPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV-- 261 (369)
T ss_dssp EETTT---------T-----EEEEEEE-SSSBEETTEEE-EEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSE--
T ss_pred Eeecc---------c-----eEEEEeecccccccccccc-ccCCCcceEEeeccccceecccccCCccccchhhcCeE--
Confidence 33211 1 11111 1110 000000 1222222222222111 001122334444443
Q ss_pred ceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCC
Q 039497 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554 (642)
Q Consensus 475 ~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~ 554 (642)
++.+...... ..+.-+||+++|++....+. ....|.++|.++-+...-....... .+.++.|++||+
T Consensus 262 -v~~I~~~G~g-lFi~thP~s~~vwvd~~~~~----~~~~v~viD~~tl~~~~~i~~~~~~-------~~~h~ef~~dG~ 328 (369)
T PF02239_consen 262 -VKTIPTQGGG-LFIKTHPDSRYVWVDTFLNP----DADTVQVIDKKTLKVVKTITPGPGK-------RVVHMEFNPDGK 328 (369)
T ss_dssp -EEEEE-SSSS---EE--TT-SEEEEE-TT-S----SHT-EEEEECCGTEEEE-HHHHHT---------EEEEEE-TTSS
T ss_pred -EEEEECCCCc-ceeecCCCCccEEeeccCCC----CCceEEEEECcCcceeEEEeccCCC-------cEeccEECCCCC
Confidence 4555543333 55678999999998843322 3567999999876432211111111 357899999999
Q ss_pred EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeecc
Q 039497 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLT 596 (642)
Q Consensus 555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt 596 (642)
.++++..+.+ ..|.++|..+.+ +.+++
T Consensus 329 ~v~vS~~~~~---------------~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 329 EVWVSVWDGN---------------GAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEEEEE--T---------------TEEEEEETTTTEEEEEEE
T ss_pred EEEEEEecCC---------------CEEEEEECCCcEEEEEEE
Confidence 9999877653 279999988765 44544
No 95
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=4.3e-08 Score=99.90 Aligned_cols=166 Identities=14% Similarity=0.122 Sum_probs=109.3
Q ss_pred cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC--CCCccCcEECCCCCe
Q 039497 372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE--TGNNAFPSCSPDGKF 449 (642)
Q Consensus 372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~SpDg~~ 449 (642)
...+...+.||||+.|++.+ -.+..||.+.. + ... +...+.... ......+.|+-|+..
T Consensus 382 ~~nIs~~aiSPdg~~Ia~st--------~~~~~iy~L~~--~------~~v---k~~~v~~~~~~~~~a~~i~ftid~~k 442 (691)
T KOG2048|consen 382 KENISCAAISPDGNLIAIST--------VSRTKIYRLQP--D------PNV---KVINVDDVPLALLDASAISFTIDKNK 442 (691)
T ss_pred ccceeeeccCCCCCEEEEee--------ccceEEEEecc--C------cce---eEEEeccchhhhccceeeEEEecCce
Confidence 45677889999999999987 56778888876 3 111 222222111 124556789999999
Q ss_pred EEEEeCCCCceeEEEEECCCCccccceeeCCCC--CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEE
Q 039497 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG--PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR 527 (642)
Q Consensus 450 l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~--~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 527 (642)
+++.+.. ..++..+++.+... +++..+... ...+..+.-||||++|+..+..+. |++|++++.+.+.
T Consensus 443 ~~~~s~~--~~~le~~el~~ps~-kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~--------I~v~nl~~~~~~~ 511 (691)
T KOG2048|consen 443 LFLVSKN--IFSLEEFELETPSF-KELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQ--------IFVYNLETLESHL 511 (691)
T ss_pred EEEEecc--cceeEEEEecCcch-hhhhccccccCCCcceeEEEcCCCCEEEEEeccce--------EEEEEcccceeec
Confidence 9888843 34667777666553 113333322 234567789999999999997765 9999999988877
Q ss_pred eeecCCCCCCCcccccccceEEcCC-CCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce
Q 039497 528 IHVAGPEGSGDVDRERINHVCFSAD-GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL 592 (642)
Q Consensus 528 l~~~~~~~~~~~~~~~~~~~~~S~D-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 592 (642)
+... .+. .++.+.|+|. -..|+.....+ ++|.+|++..++
T Consensus 512 l~~r-ln~-------~vTa~~~~~~~~~~lvvats~n-----------------Qv~efdi~~~~l 552 (691)
T KOG2048|consen 512 LKVR-LNI-------DVTAAAFSPFVRNRLVVATSNN-----------------QVFEFDIEARNL 552 (691)
T ss_pred chhc-cCc-------ceeeeeccccccCcEEEEecCC-----------------eEEEEecchhhh
Confidence 6531 122 4678889954 45555554432 788888854443
No 96
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=1.7e-10 Score=111.77 Aligned_cols=227 Identities=14% Similarity=0.141 Sum_probs=147.0
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
..+.|+|.-. |+.+..-++..+||.+|-+.....+-.. .-.+....|+|+|+..++++. ...-++.|++..
T Consensus 217 ~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~------rrky~ysyDle~ 289 (514)
T KOG2055|consen 217 TSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSG------RRKYLYSYDLET 289 (514)
T ss_pred eEEEecCCCc-eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecc------cceEEEEeeccc
Confidence 3567888766 4454444666666666655444333322 556888999999996666653 255667777755
Q ss_pred ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccccee
Q 039497 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS 490 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~ 490 (642)
. ... +..++...+...+..+.+|||+++|++... ...|+++...|++. ..-....+.+..+.
T Consensus 290 --a------k~~---k~~~~~g~e~~~~e~FeVShd~~fia~~G~---~G~I~lLhakT~el----i~s~KieG~v~~~~ 351 (514)
T KOG2055|consen 290 --A------KVT---KLKPPYGVEEKSMERFEVSHDSNFIAIAGN---NGHIHLLHAKTKEL----ITSFKIEGVVSDFT 351 (514)
T ss_pred --c------ccc---cccCCCCcccchhheeEecCCCCeEEEccc---CceEEeehhhhhhh----hheeeeccEEeeEE
Confidence 1 111 222222222245667899999999988763 34899999888875 33233457788899
Q ss_pred EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee-cCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCC
Q 039497 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV-AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEP 569 (642)
Q Consensus 491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~ 569 (642)
|+.||+.|+..+..+ +||+||+.......... .+.. .-..++.|++|.+|+..+..+-.
T Consensus 352 fsSdsk~l~~~~~~G--------eV~v~nl~~~~~~~rf~D~G~v--------~gts~~~S~ng~ylA~GS~~GiV---- 411 (514)
T KOG2055|consen 352 FSSDSKELLASGGTG--------EVYVWNLRQNSCLHRFVDDGSV--------HGTSLCISLNGSYLATGSDSGIV---- 411 (514)
T ss_pred EecCCcEEEEEcCCc--------eEEEEecCCcceEEEEeecCcc--------ceeeeeecCCCceEEeccCcceE----
Confidence 999999888877655 39999998765443322 2211 23678889999988888776533
Q ss_pred CCCCCCCCCCCcEEEEE--cCCCceeeccC---CCCCCCCcEEecCCceEE
Q 039497 570 VSWPNQFQPYGDLYVVK--LDGSGLRRLTW---NGYENGTPAWHPGNQLDL 615 (642)
Q Consensus 570 ~~~~~~~~~~~~l~~~~--~~~~~~~~lt~---~~~~~~~~~~s~dg~~~~ 615 (642)
+||-.+ ..+..++.+.. -...+.++.|++|+|.++
T Consensus 412 -----------NIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLA 451 (514)
T KOG2055|consen 412 -----------NIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILA 451 (514)
T ss_pred -----------EEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhh
Confidence 666543 23344444443 223467999999999874
No 97
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=9.1e-10 Score=111.68 Aligned_cols=269 Identities=16% Similarity=0.094 Sum_probs=176.1
Q ss_pred cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCC-CCccccceeecCCcEEEEEEeccCCceeeEEE
Q 039497 195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPP-GVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI 273 (642)
Q Consensus 195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~ 273 (642)
.+.|+..+- ++++.+ ..+|.++..++ ....+... ...+..+.|+++|++|++....+ .+.+
T Consensus 182 lldWss~n~-laValg----~~vylW~~~s~--------~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g-----~v~i 243 (484)
T KOG0305|consen 182 LLDWSSANV-LAVALG----QSVYLWSASSG--------SVTELCSFGEELVTSVKWSPDGSHLAVGTSDG-----TVQI 243 (484)
T ss_pred HhhcccCCe-EEEEec----ceEEEEecCCC--------ceEEeEecCCCceEEEEECCCCCEEEEeecCC-----eEEE
Confidence 358996654 444322 27899998887 66666555 55788899999999999955443 8999
Q ss_pred EEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCc
Q 039497 274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN 353 (642)
Q Consensus 274 ~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 353 (642)
||......... +... ........+|. +. ++....+ .
T Consensus 244 wD~~~~k~~~~---------------------------------~~~~------h~~rvg~laW~--~~-~lssGsr--~ 279 (484)
T KOG0305|consen 244 WDVKEQKKTRT---------------------------------LRGS------HASRVGSLAWN--SS-VLSSGSR--D 279 (484)
T ss_pred Eehhhcccccc---------------------------------ccCC------cCceeEEEecc--Cc-eEEEecC--C
Confidence 99733221100 0000 00011133454 22 2222222 2
Q ss_pred eeEEEEECCCCCe--eEEe-ecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497 354 AGIKIAKSDGSKR--WTLI-KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL 430 (642)
Q Consensus 354 ~~l~~~d~~~~~~--~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 430 (642)
..|..+|+...+. ..+. +...+..+.|++|+++++-.. .++.+.||+... .. ....+
T Consensus 280 ~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGg-------nDN~~~Iwd~~~--------~~-----p~~~~ 339 (484)
T KOG0305|consen 280 GKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGG-------NDNVVFIWDGLS--------PE-----PKFTF 339 (484)
T ss_pred CcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCC-------CccceEeccCCC--------cc-----ccEEE
Confidence 3444444433322 1111 256788899999999998765 378999999843 12 56667
Q ss_pred cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCC
Q 039497 431 TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV 510 (642)
Q Consensus 431 ~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~ 510 (642)
..+. ..+..++|+|=-+-|+.+.....+..|..||..+|+. +..+..+ ..+.++.|++..+.|+.+.....
T Consensus 340 ~~H~-aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~---i~~vdtg-sQVcsL~Wsk~~kEi~sthG~s~---- 410 (484)
T KOG0305|consen 340 TEHT-AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR---IDSVDTG-SQVCSLIWSKKYKELLSTHGYSE---- 410 (484)
T ss_pred eccc-eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE---ecccccC-CceeeEEEcCCCCEEEEecCCCC----
Confidence 7776 7888899999887788777766778999999999986 4445444 45788999999999998887643
Q ss_pred CceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497 511 EAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA 564 (642)
Q Consensus 511 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~ 564 (642)
.+|-+|+..+-+..... .++.. .+..+++||||+.|+..+.+++
T Consensus 411 --n~i~lw~~ps~~~~~~l-~gH~~-------RVl~la~SPdg~~i~t~a~DET 454 (484)
T KOG0305|consen 411 --NQITLWKYPSMKLVAEL-LGHTS-------RVLYLALSPDGETIVTGAADET 454 (484)
T ss_pred --CcEEEEeccccceeeee-cCCcc-------eeEEEEECCCCCEEEEecccCc
Confidence 34666666553333222 25555 7889999999999999998764
No 98
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.27 E-value=4.1e-09 Score=103.73 Aligned_cols=328 Identities=11% Similarity=0.051 Sum_probs=193.8
Q ss_pred cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCC-ceeEeecCCCcceEeeCCeEEEEEecC-------CC
Q 039497 142 DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPN-KRVIVCERGGWPTWSGDSTIYFHRQAD-------DG 213 (642)
Q Consensus 142 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~l~~~~~~~~~wspdg~~~~~~~~~-------~g 213 (642)
....++||-|++|+...... |-+|.-.... ..+..+...-...+||.+++|.+-..+ ++
T Consensus 35 ~~~~~~SP~G~~l~~~~~~~-------------V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~ 101 (561)
T COG5354 35 VAYVSESPLGTYLFSEHAAG-------------VECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEI 101 (561)
T ss_pred hhheeecCcchheehhhccc-------------eEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhcc
Confidence 35678999999998764332 4444433332 222222333456888888777653211 01
Q ss_pred ---c--eEEEEEecCCCcccccCCcccee-eCCCCC-c-cc-cceeecCCcEEEEEEeccCCceeeEEEEEee-------
Q 039497 214 ---W--WSIFRVSFPENLEFLGFPIAPTR-VTPPGV-H-CF-TPAAFHDGKRLAVATRRKNRNFRHIEIYDLT------- 277 (642)
Q Consensus 214 ---~--~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~-~-~~-~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~------- 277 (642)
+ -+++.+|..+|. +.. ...... . .. ...||-|.++++... ...+.++++.
T Consensus 102 sp~~~~n~~~vwd~~sg~--------iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv------~~sl~i~e~t~n~~~~p 167 (561)
T COG5354 102 SPFTSKNNVFVWDIASGM--------IVFSFNGISQPYLGWPVLKFSIDDKYVARVV------GSSLYIHEITDNIEEHP 167 (561)
T ss_pred CCccccCceeEEeccCce--------eEeeccccCCcccccceeeeeecchhhhhhc------cCeEEEEecCCccccCc
Confidence 1 168899988883 222 111111 1 11 356788888777642 2367788851
Q ss_pred --cCCCCcccCCeecCCCC--EEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecC---
Q 039497 278 --LNPNFHHYNPFVSANSE--FIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDF--- 350 (642)
Q Consensus 278 --~~~~~~~~~~~~spDg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~--- 350 (642)
.-...++..+.|||-|. .|+|..-..... -..+.++....+.......+....+..+.|.+.|+.|++....
T Consensus 168 ~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~k-pa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~k 246 (561)
T COG5354 168 FKNLRPVGILDFSISPEGNHDELAYWTPEKLNK-PAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTK 246 (561)
T ss_pred hhhccccceeeEEecCCCCCceEEEEccccCCC-CcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeee
Confidence 11234566788999654 455543222211 1123333333333344445556667788999999999884431
Q ss_pred -----CCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccc
Q 039497 351 -----ELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIP 424 (642)
Q Consensus 351 -----~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 424 (642)
-+..+|+++++.....+.... .+.++.+.|.|+++.+++++. .....+.++++..
T Consensus 247 snKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g-----~~pa~~s~~~lr~-------------- 307 (561)
T COG5354 247 SNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISG-----YMPASVSVFDLRG-------------- 307 (561)
T ss_pred cccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEec-----ccccceeeccccc--------------
Confidence 134789999988666544423 678999999999999998873 1234455555543
Q ss_pred cceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccceeEecCCCEEEEEec
Q 039497 425 CDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSWSPKGDLIAFSSN 503 (642)
Q Consensus 425 ~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~~~~ 503 (642)
..+..... ..-..+.|||.+++++++.-.+-...+-+++.. |+. ..+.. .......+.|||||.++.....
T Consensus 308 -Nl~~~~Pe--~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~-~rf----~~~~~~~~~n~s~~~wspd~qF~~~~~t 379 (561)
T COG5354 308 -NLRFYFPE--QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA-GRF----KVAGAFNGLNTSYCDWSPDGQFYDTDTT 379 (561)
T ss_pred -ceEEecCC--cccccccccCcccEEEEecCCccccceEEeccC-Cce----EEEEEeecCCceEeeccCCceEEEecCC
Confidence 33333222 233458899999999998877666688889987 443 33322 1123355689999997766554
Q ss_pred CCCCCCCCceeEEEEeCCCCceE
Q 039497 504 RHNPDNVEAFSLYVIKPDGSGLR 526 (642)
Q Consensus 504 ~~~~~~~~~~~l~~~d~~~~~~~ 526 (642)
... ....+.+-+||+.+...-
T Consensus 380 s~k--~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 380 SEK--LRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred Ccc--cccCcceEEEEecCchhh
Confidence 432 113455777887665443
No 99
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=7.7e-10 Score=116.06 Aligned_cols=213 Identities=17% Similarity=0.195 Sum_probs=144.0
Q ss_pred EcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCC
Q 039497 337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414 (642)
Q Consensus 337 ~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 414 (642)
+.-++.+++..+. .+.|.++....++...+.. .-.+..++++.+|+.+++.+. +..+.+..+..
T Consensus 62 ia~~s~~f~~~s~---~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsd-------D~~vK~~~~~D---- 127 (933)
T KOG1274|consen 62 IACYSNHFLTGSE---QNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSD-------DTAVKLLNLDD---- 127 (933)
T ss_pred EeecccceEEeec---cceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecC-------ceeEEEEeccc----
Confidence 3444555555443 3677788887777654433 456788999999999999874 66777777654
Q ss_pred CCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC---C-----CCcc
Q 039497 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD---G-----PWID 486 (642)
Q Consensus 415 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~---~-----~~~~ 486 (642)
+. ..+.+..+. ..+..+.|+|.|+.|+..+ .++.|++|+++++.. ...++. . ....
T Consensus 128 ----~s-----~~~~lrgh~-apVl~l~~~p~~~fLAvss---~dG~v~iw~~~~~~~---~~tl~~v~k~n~~~~s~i~ 191 (933)
T KOG1274|consen 128 ----SS-----QEKVLRGHD-APVLQLSYDPKGNFLAVSS---CDGKVQIWDLQDGIL---SKTLTGVDKDNEFILSRIC 191 (933)
T ss_pred ----cc-----hheeecccC-CceeeeeEcCCCCEEEEEe---cCceEEEEEcccchh---hhhcccCCcccccccccee
Confidence 23 445555555 8889999999999999887 445899999998876 344432 1 2234
Q ss_pred cceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcc
Q 039497 487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVM 566 (642)
Q Consensus 487 ~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~ 566 (642)
..++|+|+|..+++...++. |.+|+.++-+..-....+...+ .+..++|||.|++|+....++
T Consensus 192 ~~~aW~Pk~g~la~~~~d~~--------Vkvy~r~~we~~f~Lr~~~~ss------~~~~~~wsPnG~YiAAs~~~g--- 254 (933)
T KOG1274|consen 192 TRLAWHPKGGTLAVPPVDNT--------VKVYSRKGWELQFKLRDKLSSS------KFSDLQWSPNGKYIAASTLDG--- 254 (933)
T ss_pred eeeeecCCCCeEEeeccCCe--------EEEEccCCceeheeeccccccc------ceEEEEEcCCCcEEeeeccCC---
Confidence 56799999877877776654 8888887765543322222220 367899999999999888665
Q ss_pred cCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCce
Q 039497 567 AEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613 (642)
Q Consensus 567 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~ 613 (642)
.|-+||.++-.. ......+...+|-|+...
T Consensus 255 --------------~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~ 284 (933)
T KOG1274|consen 255 --------------QILVWNVDTHER---HEFKRAVCCEAWKPNANA 284 (933)
T ss_pred --------------cEEEEecccchh---ccccceeEEEecCCCCCe
Confidence 788888876221 112234456677776633
No 100
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.26 E-value=2e-08 Score=102.01 Aligned_cols=317 Identities=16% Similarity=0.163 Sum_probs=157.3
Q ss_pred ceEEEEccCCceE-ecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC--Ccce
Q 039497 121 ALYSTDLKASKFT-RLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG--GWPT 197 (642)
Q Consensus 121 ~l~~~~~~~~~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~ 197 (642)
.+..++.++.+.. ++.........+.+||||++++....++ .|-++|+.+.+..+-..... ...+
T Consensus 17 ~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg------------~vsviD~~~~~~v~~i~~G~~~~~i~ 84 (369)
T PF02239_consen 17 SVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDG------------TVSVIDLATGKVVATIKVGGNPRGIA 84 (369)
T ss_dssp EEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTS------------EEEEEETTSSSEEEEEE-SSEEEEEE
T ss_pred EEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCC------------eEEEEECCcccEEEEEecCCCcceEE
Confidence 7999998887654 4544333334467999999988775433 68899999988544433222 2469
Q ss_pred EeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCC-------ccccceeecCCcEEEEEEeccCCceee
Q 039497 198 WSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGV-------HCFTPAAFHDGKRLAVATRRKNRNFRH 270 (642)
Q Consensus 198 wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~SpdG~~l~~~~~~~~~~~~~ 270 (642)
+|+||+++++++...+ ++..+|..+.+ ..+.+...+. .+..+..+|....+++...+.+ .
T Consensus 85 ~s~DG~~~~v~n~~~~--~v~v~D~~tle-------~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~----~ 151 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPG--TVSVIDAETLE-------PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTG----E 151 (369)
T ss_dssp E--TTTEEEEEEEETT--EEEEEETTT---------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTT----E
T ss_pred EcCCCCEEEEEecCCC--ceeEecccccc-------ceeecccccccccccCCCceeEEecCCCCEEEEEEccCC----e
Confidence 9999998888765556 67777877763 2333322211 1122233666665555333322 4
Q ss_pred EEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeC--CCccEEcCCCCEEEEEe
Q 039497 271 IEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLN--GSFPSFSPDGGLIVFNH 348 (642)
Q Consensus 271 i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~spdg~~l~~~~ 348 (642)
+++.|.... +.+.. ...... .....|+|+|++++...
T Consensus 152 I~vVdy~d~--------------~~~~~---------------------------~~i~~g~~~~D~~~dpdgry~~va~ 190 (369)
T PF02239_consen 152 IWVVDYSDP--------------KNLKV---------------------------TTIKVGRFPHDGGFDPDGRYFLVAA 190 (369)
T ss_dssp EEEEETTTS--------------SCEEE---------------------------EEEE--TTEEEEEE-TTSSEEEEEE
T ss_pred EEEEEeccc--------------cccce---------------------------eeecccccccccccCcccceeeecc
Confidence 555443110 00000 000000 01347999999876654
Q ss_pred cCCCceeEEEEECCCCCeeEEeecC-Cce---ee-eeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCC--CCCCC
Q 039497 349 DFELNAGIKIAKSDGSKRWTLIKDR-TAF---YN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD--DNNRE 421 (642)
Q Consensus 349 ~~~~~~~l~~~d~~~~~~~~l~~~~-~~~---~~-~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~ 421 (642)
. ....|-++|.++++...+...+ ... .. ...|..-.+..... .....+-.+.. +... .....
T Consensus 191 ~--~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~-------~~~~~~~~ig~--~~v~v~d~~~w 259 (369)
T PF02239_consen 191 N--GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSG-------LGYFAIPLIGT--DPVSVHDDYAW 259 (369)
T ss_dssp G--GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEB-------SSSSEEEEEE----TTT-STTTBT
T ss_pred c--ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecc-------ccceecccccC--CccccchhhcC
Confidence 3 3458888898887765554311 111 11 12233222332221 11111111211 1000 00000
Q ss_pred ccccceEEccccCCCCccCcEECCCCCeEEEEeC-CCCceeEEEEECCCCccccceeeCCCCCC-cccceeEecCCCEEE
Q 039497 422 EIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSG-RSGHKNLFVLDAVNGEFNGDIRQLTDGPW-IDTMPSWSPKGDLIA 499 (642)
Q Consensus 422 ~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~-~~g~~~l~~~d~~~g~~~~~~~~l~~~~~-~~~~~~~spdG~~l~ 499 (642)
+ ..+.+.... .. ..+..+||++++++... ......|.++|.++-+. ...+....+ ...++.|++||++++
T Consensus 260 k---vv~~I~~~G-~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~---~~~i~~~~~~~~~h~ef~~dG~~v~ 331 (369)
T PF02239_consen 260 K---VVKTIPTQG-GG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKV---VKTITPGPGKRVVHMEFNPDGKEVW 331 (369)
T ss_dssp S---EEEEEE-SS-SS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEE---EE-HHHHHT--EEEEEE-TTSSEEE
T ss_pred e---EEEEEECCC-Cc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcce---eEEEeccCCCcEeccEECCCCCEEE
Confidence 0 334444332 22 45678999999988721 12355899999988664 455543322 367899999999999
Q ss_pred EEecCCCCCCCCceeEEEEeCCCCceEEe
Q 039497 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528 (642)
Q Consensus 500 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 528 (642)
++....+ ..|.++|..+-++...
T Consensus 332 vS~~~~~------~~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 332 VSVWDGN------GAIVVYDAKTLKEKKR 354 (369)
T ss_dssp EEEE--T------TEEEEEETTTTEEEEE
T ss_pred EEEecCC------CEEEEEECCCcEEEEE
Confidence 9877653 1699999988665443
No 101
>PTZ00421 coronin; Provisional
Probab=99.25 E-value=9.5e-09 Score=108.02 Aligned_cols=206 Identities=13% Similarity=0.111 Sum_probs=131.7
Q ss_pred CccEEcC-CCCEEEEEecCCCceeEEEEECCCCCe--------eEEee-cCCceeeeeecCCC-EEEEEEcCCCcccCCC
Q 039497 333 SFPSFSP-DGGLIVFNHDFELNAGIKIAKSDGSKR--------WTLIK-DRTAFYNSWSPTEK-HVIYTSTGPIFQSERA 401 (642)
Q Consensus 333 ~~~~~sp-dg~~l~~~~~~~~~~~l~~~d~~~~~~--------~~l~~-~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~ 401 (642)
....|+| +++.|+..+. ...|.++++..+.. ..+.. ...+..+.|+|++. .|+..+ .++
T Consensus 79 ~~v~fsP~d~~~LaSgS~---DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs-------~Dg 148 (493)
T PTZ00421 79 IDVAFNPFDPQKLFTASE---DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG-------ADM 148 (493)
T ss_pred EEEEEcCCCCCEEEEEeC---CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe-------CCC
Confidence 4568999 8887777654 35666777654321 11211 45678899999875 555444 378
Q ss_pred eEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC
Q 039497 402 TVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD 481 (642)
Q Consensus 402 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~ 481 (642)
.++||++.. +. ....+..+. ..+..+.|+|||+.|+..+. +..|.+||+.+++. +..+..
T Consensus 149 tVrIWDl~t--------g~-----~~~~l~~h~-~~V~sla~spdG~lLatgs~---Dg~IrIwD~rsg~~---v~tl~~ 208 (493)
T PTZ00421 149 VVNVWDVER--------GK-----AVEVIKCHS-DQITSLEWNLDGSLLCTTSK---DKKLNIIDPRDGTI---VSSVEA 208 (493)
T ss_pred EEEEEECCC--------Ce-----EEEEEcCCC-CceEEEEEECCCCEEEEecC---CCEEEEEECCCCcE---EEEEec
Confidence 999999965 22 344555454 66888999999998876653 34799999998875 455554
Q ss_pred CCCc-ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE-EeeecCCCCCCCcccccccceEEcCCCCEEEEE
Q 039497 482 GPWI-DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR-RIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559 (642)
Q Consensus 482 ~~~~-~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~ 559 (642)
+... .....|.+++..|+..+.... ....|.+||+...... ......... ....+.|++|++.|+..
T Consensus 209 H~~~~~~~~~w~~~~~~ivt~G~s~s----~Dr~VklWDlr~~~~p~~~~~~d~~~-------~~~~~~~d~d~~~L~lg 277 (493)
T PTZ00421 209 HASAKSQRCLWAKRKDLIITLGCSKS----QQRQIMLWDTRKMASPYSTVDLDQSS-------ALFIPFFDEDTNLLYIG 277 (493)
T ss_pred CCCCcceEEEEcCCCCeEEEEecCCC----CCCeEEEEeCCCCCCceeEeccCCCC-------ceEEEEEcCCCCEEEEE
Confidence 4332 345789999888776553321 2345999999754322 111111111 23456899999988877
Q ss_pred EecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeec
Q 039497 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL 595 (642)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 595 (642)
....+ .|..|++..+.+...
T Consensus 278 gkgDg----------------~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 278 SKGEG----------------NIRCFELMNERLTFC 297 (493)
T ss_pred EeCCC----------------eEEEEEeeCCceEEE
Confidence 64222 688888887765443
No 102
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.22 E-value=1.9e-10 Score=106.31 Aligned_cols=227 Identities=15% Similarity=0.162 Sum_probs=161.6
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee----------cCCceeeeeecCCCEEEEEEcCCCcccCCCe
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----------DRTAFYNSWSPTEKHVIYTSTGPIFQSERAT 402 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 402 (642)
....|||||++++..+. .+-|-++|..+|+.+.-.. +..+..+.||.|...|+..+ .++.
T Consensus 217 EcA~FSPDgqyLvsgSv---DGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs-------qDGk 286 (508)
T KOG0275|consen 217 ECARFSPDGQYLVSGSV---DGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS-------QDGK 286 (508)
T ss_pred hheeeCCCCceEeeccc---cceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC-------cCCc
Confidence 35689999998887543 3556667777776554222 55677889999999888776 3899
Q ss_pred EEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC
Q 039497 403 VQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG 482 (642)
Q Consensus 403 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~ 482 (642)
+.+|.+.+ |. ..+++.......+..+.||.|+..|+-++.+ ..+.+.-+++|+. ++.+..+
T Consensus 287 IKvWri~t--------G~-----ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD---~tvRiHGlKSGK~---LKEfrGH 347 (508)
T KOG0275|consen 287 IKVWRIET--------GQ-----CLRRFDRAHTKGVTCLSFSRDNSQILSASFD---QTVRIHGLKSGKC---LKEFRGH 347 (508)
T ss_pred EEEEEEec--------ch-----HHHHhhhhhccCeeEEEEccCcchhhccccc---ceEEEeccccchh---HHHhcCc
Confidence 99999987 44 6777764444778899999999999877743 4677778888887 7778888
Q ss_pred CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEee-ecCCCCCCCcccccccceEEcCCCCEEEEEEe
Q 039497 483 PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH-VAGPEGSGDVDRERINHVCFSADGEWLLFTAN 561 (642)
Q Consensus 483 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~ 561 (642)
...++...|++||.+|+..+.++. +.+|+.++.+...-. ..+..- .+..+-.-|.+.--++..+
T Consensus 348 sSyvn~a~ft~dG~~iisaSsDgt--------vkvW~~KtteC~~Tfk~~~~d~-------~vnsv~~~PKnpeh~iVCN 412 (508)
T KOG0275|consen 348 SSYVNEATFTDDGHHIISASSDGT--------VKVWHGKTTECLSTFKPLGTDY-------PVNSVILLPKNPEHFIVCN 412 (508)
T ss_pred cccccceEEcCCCCeEEEecCCcc--------EEEecCcchhhhhhccCCCCcc-------cceeEEEcCCCCceEEEEc
Confidence 888899999999999999998876 899998776532211 111111 3344544454433333444
Q ss_pred cCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCC---CCCCCCcEEecCCceEEeecC
Q 039497 562 LGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN---GYENGTPAWHPGNQLDLGKLR 619 (642)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~---~~~~~~~~~s~dg~~~~~~~~ 619 (642)
+. ..||.+++.|.-++..+.+ ++.......||.|.|+.....
T Consensus 413 rs----------------ntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigE 457 (508)
T KOG0275|consen 413 RS----------------NTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGE 457 (508)
T ss_pred CC----------------CeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEcc
Confidence 33 2799999999877777764 344567789999998755433
No 103
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.22 E-value=7.8e-09 Score=93.60 Aligned_cols=272 Identities=14% Similarity=0.135 Sum_probs=168.2
Q ss_pred ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEE
Q 039497 196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD 275 (642)
Q Consensus 196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d 275 (642)
+.+.-+|.++|+. +.+...++|... .+. ..-...++...+....++-+.++++. +++...+.|||
T Consensus 16 iKyN~eGDLlFsc-aKD~~~~vw~s~-nGe--------rlGty~GHtGavW~~Did~~s~~liT-----GSAD~t~kLWD 80 (327)
T KOG0643|consen 16 IKYNREGDLLFSC-AKDSTPTVWYSL-NGE--------RLGTYDGHTGAVWCCDIDWDSKHLIT-----GSADQTAKLWD 80 (327)
T ss_pred EEecCCCcEEEEe-cCCCCceEEEec-CCc--------eeeeecCCCceEEEEEecCCcceeee-----ccccceeEEEE
Confidence 6888899999987 667777888652 222 44555666656777777888888887 56667999999
Q ss_pred eecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecC--CCc
Q 039497 276 LTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDF--ELN 353 (642)
Q Consensus 276 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~--~~~ 353 (642)
+. .|+.|+.... . .......|+++|+++++..+. ...
T Consensus 81 v~--------------tGk~la~~k~-----------------~----------~~Vk~~~F~~~gn~~l~~tD~~mg~~ 119 (327)
T KOG0643|consen 81 VE--------------TGKQLATWKT-----------------N----------SPVKRVDFSFGGNLILASTDKQMGYT 119 (327)
T ss_pred cC--------------CCcEEEEeec-----------------C----------CeeEEEeeccCCcEEEEEehhhcCcc
Confidence 93 3444444311 0 011134789999998886653 233
Q ss_pred eeEEEEECC-------CCCe-eEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccc
Q 039497 354 AGIKIAKSD-------GSKR-WTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIP 424 (642)
Q Consensus 354 ~~l~~~d~~-------~~~~-~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 424 (642)
..|.++++. +.++ ..+.. ...+..+.|+|-++.|++... ++.+.+|++.. |.+
T Consensus 120 ~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe-------~G~is~~da~~---------g~~-- 181 (327)
T KOG0643|consen 120 CFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHE-------DGSISIYDART---------GKE-- 181 (327)
T ss_pred eEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecC-------CCcEEEEEccc---------Cce--
Confidence 456666665 2332 22222 566788999999999988763 78999999875 211
Q ss_pred cceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecC
Q 039497 425 CDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504 (642)
Q Consensus 425 ~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~ 504 (642)
.......+. ..+..+.+|||..+++..+.+ .+-.++|..+=+. ++.... ...++..+++|--..++.....
T Consensus 182 -~v~s~~~h~-~~Ind~q~s~d~T~FiT~s~D---ttakl~D~~tl~v---~Kty~t-e~PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 182 -LVDSDEEHS-SKINDLQFSRDRTYFITGSKD---TTAKLVDVRTLEV---LKTYTT-ERPVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred -eeechhhhc-cccccccccCCcceEEecccC---ccceeeeccceee---EEEeee-cccccceecccccceEEecCCc
Confidence 222222333 467789999999998876643 2556677766543 333322 2456778999988877776654
Q ss_pred CCCCCCCceeEEEEeCCCCceEE-----eee------cCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497 505 HNPDNVEAFSLYVIKPDGSGLRR-----IHV------AGPEGSGDVDRERINHVCFSADGEWLLFTANLGA 564 (642)
Q Consensus 505 ~~~~~~~~~~l~~~d~~~~~~~~-----l~~------~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~ 564 (642)
+. ..+---+...++.+. +.. .++.+ +++.++|+|||+... +..+.+
T Consensus 253 eA------~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-------PINsvAfhPdGksYs-SGGEDG 309 (327)
T KOG0643|consen 253 EA------MDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-------PINSVAFHPDGKSYS-SGGEDG 309 (327)
T ss_pred ee------eeeeeecccccchhhhHHHHHHHHHhcccccccc-------CcceeEECCCCcccc-cCCCCc
Confidence 32 122222222222110 000 14455 678999999998543 333333
No 104
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.22 E-value=1.5e-10 Score=110.43 Aligned_cols=264 Identities=14% Similarity=0.057 Sum_probs=172.4
Q ss_pred ccccceeecCCcEEEEEEeccCCceeeEEEEEe--------ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceE
Q 039497 244 HCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL--------TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHL 315 (642)
Q Consensus 244 ~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~--------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~ 315 (642)
.+..+.|.|+|++|+.....+ ++.||+. ...+...+....||++|.+++.....+- ...|.
T Consensus 98 ~V~~v~WtPeGRRLltgs~SG-----EFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~------iKyWq 166 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSG-----EFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGM------IKYWQ 166 (464)
T ss_pred ceeeEEEcCCCceeEeecccc-----cEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCce------EEecc
Confidence 456688999999999954433 7888887 2356667788999999998876522211 22332
Q ss_pred eeccCCCceeE-EeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCe-eEEee-cCCceeeeeecCCCEEEEEEc
Q 039497 316 EPVASPVKELR-MLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR-WTLIK-DRTAFYNSWSPTEKHVIYTST 392 (642)
Q Consensus 316 ~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~-~~l~~-~~~~~~~~~spdg~~l~~~~~ 392 (642)
...+.- .... ......+..+|||...+++..++ .+.|.++|..-.+. ++|.. ...+.++.|.|....|+..+.
T Consensus 167 pnmnnV-k~~~ahh~eaIRdlafSpnDskF~t~Sd---Dg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk 242 (464)
T KOG0284|consen 167 PNMNNV-KIIQAHHAEAIRDLAFSPNDSKFLTCSD---DGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK 242 (464)
T ss_pred cchhhh-HHhhHhhhhhhheeccCCCCceeEEecC---CCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC
Confidence 222110 0000 01122356789997666655544 35677777654443 44433 567889999998887776653
Q ss_pred CCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcc
Q 039497 393 GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472 (642)
Q Consensus 393 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~ 472 (642)
+.-+.+|+-.. +. ....+..+. ..+..+.|+|++.+|+..+.+ ..+-++|+.+-+.
T Consensus 243 -------DnlVKlWDprS--------g~-----cl~tlh~HK-ntVl~~~f~~n~N~Llt~skD---~~~kv~DiR~mkE 298 (464)
T KOG0284|consen 243 -------DNLVKLWDPRS--------GS-----CLATLHGHK-NTVLAVKFNPNGNWLLTGSKD---QSCKVFDIRTMKE 298 (464)
T ss_pred -------CceeEeecCCC--------cc-----hhhhhhhcc-ceEEEEEEcCCCCeeEEccCC---ceEEEEehhHhHH
Confidence 55888888765 33 556666666 778889999999999988743 4788889875333
Q ss_pred ccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCC
Q 039497 473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD 552 (642)
Q Consensus 473 ~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~D 552 (642)
+...-.+...+....|+|=-.-|+.+..... .|+.+.+...++.......+.+ .+.+++|.|=
T Consensus 299 ---l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg-------svvh~~v~~~~p~~~i~~AHd~-------~iwsl~~hPl 361 (464)
T KOG0284|consen 299 ---LFTYRGHKKDVTSLTWHPLNESLFTSGGSDG-------SVVHWVVGLEEPLGEIPPAHDG-------EIWSLAYHPL 361 (464)
T ss_pred ---HHHhhcchhhheeeccccccccceeeccCCC-------ceEEEeccccccccCCCccccc-------ceeeeecccc
Confidence 4555556677888999997666666555432 2677766544443333344555 6789999999
Q ss_pred CCEEEEEEecC
Q 039497 553 GEWLLFTANLG 563 (642)
Q Consensus 553 g~~l~~~~~~~ 563 (642)
|..|+..+++.
T Consensus 362 Ghil~tgsnd~ 372 (464)
T KOG0284|consen 362 GHILATGSNDR 372 (464)
T ss_pred ceeEeecCCCc
Confidence 98887766654
No 105
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=2.4e-08 Score=99.67 Aligned_cols=321 Identities=14% Similarity=0.152 Sum_probs=178.9
Q ss_pred ceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeec--CCC-cce
Q 039497 121 ALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCE--RGG-WPT 197 (642)
Q Consensus 121 ~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--~~~-~~~ 197 (642)
.+++.+...+. ..|+..........|||-|.+|..-.-.. ++ .+.......+-+|+++++..+--... ..+ .+.
T Consensus 56 ~v~i~~~~~~~-~~lt~~~~~~~~L~fSP~g~yL~T~e~~~-i~-~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~q 132 (566)
T KOG2315|consen 56 VVKVFEIATLK-VVLCVELKKTYDLLFSPKGNYLLTWEPWA-IY-GPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQ 132 (566)
T ss_pred eEEEEEccCCc-EEEEeccceeeeeeecccccccccccccc-cc-cCCCCCCCceeeeeeccceehhheehhhhcCcccc
Confidence 56776766664 44444444556689999999998432111 11 11123346788888888543222221 112 469
Q ss_pred EeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCC--cEEEEEEeccCCceeeEEEEE
Q 039497 198 WSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDG--KRLAVATRRKNRNFRHIEIYD 275 (642)
Q Consensus 198 wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG--~~l~~~~~~~~~~~~~i~~~d 275 (642)
|+.|..+.+-- ..+..++|..+-..+ ...++-..+ +..+.+||.+ -.+++-.-..++....+++|.
T Consensus 133 fs~dEsl~arl--v~nev~f~~~~~f~~--------~~~kl~~~~--i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~ 200 (566)
T KOG2315|consen 133 FSIDESLAARL--VSNEVQFYDLGSFKT--------IQHKLSVSG--ITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYK 200 (566)
T ss_pred cccchhhhhhh--hcceEEEEecCCccc--------eeeeeeccc--eeeEEecCCCCCceEEEEccCCCCCCcEEEEec
Confidence 99996433221 134344544433222 333444333 4455666653 445554444555666666665
Q ss_pred eecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEec------
Q 039497 276 LTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHD------ 349 (642)
Q Consensus 276 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~------ 349 (642)
........ ....-.....+-..+.|++-|+-|+....
T Consensus 201 ~~~~~~~~-------------------------------------~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 201 YPEEGQHQ-------------------------------------PVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred cccccccc-------------------------------------hhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 52110000 00000011111123467776665555221
Q ss_pred ---CCCceeEEEEECCCCCee-EEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCcccc
Q 039497 350 ---FELNAGIKIAKSDGSKRW-TLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPC 425 (642)
Q Consensus 350 ---~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 425 (642)
.-+...||+++.++...+ ++...+.++++.|+|+|+.++++-. ---..+.|++++- +
T Consensus 244 n~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyG-----fMPAkvtifnlr~--~------------ 304 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYG-----FMPAKVTIFNLRG--K------------ 304 (566)
T ss_pred CccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEe-----cccceEEEEcCCC--C------------
Confidence 125678999999854432 3333788999999999999887753 2245666666633 1
Q ss_pred ceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC-CcccceeEecCCCEEEEEecC
Q 039497 426 DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP-WIDTMPSWSPKGDLIAFSSNR 504 (642)
Q Consensus 426 ~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~-~~~~~~~~spdG~~l~~~~~~ 504 (642)
....+.. +.-..+.|+|.|+.|+++...+-.+++-+||+.+- +.|.... .....+.|+|||.+|+.+...
T Consensus 305 ~v~df~e---gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~------K~i~~~~a~~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 305 PVFDFPE---GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR------KLIAKFKAANTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred EeEeCCC---CCccceEECCCCCEEEEeecCCCCCceEEEeccch------hhccccccCCceEEEEcCCCcEEEEEecc
Confidence 3333333 33446889999999999998776778889998863 3444322 233567999999999888765
Q ss_pred CCCCCCCceeEEEEeCCCC
Q 039497 505 HNPDNVEAFSLYVIKPDGS 523 (642)
Q Consensus 505 ~~~~~~~~~~l~~~d~~~~ 523 (642)
..-+ -.+.+.+|+..|.
T Consensus 376 PRlr--vdNg~KiwhytG~ 392 (566)
T KOG2315|consen 376 PRLR--VDNGIKIWHYTGS 392 (566)
T ss_pred ccEE--ecCCeEEEEecCc
Confidence 3211 1233555555543
No 106
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.21 E-value=1.8e-09 Score=99.38 Aligned_cols=175 Identities=15% Similarity=0.173 Sum_probs=110.2
Q ss_pred eeeeeecCCCEEEEEEcCCCccc---CCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEE
Q 039497 376 FYNSWSPTEKHVIYTSTGPIFQS---ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452 (642)
Q Consensus 376 ~~~~~spdg~~l~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~ 452 (642)
..+.|+|+|+.|++......-.. --+...|+.++. . +. ....+.....+.+..++|+|+|+.+++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~--~-----~~-----~~~~i~l~~~~~I~~~~WsP~g~~fav 76 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNE--K-----NI-----PVESIELKKEGPIHDVAWSPNGNEFAV 76 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEec--C-----CC-----ccceeeccCCCceEEEEECcCCCEEEE
Confidence 46789999999988765210001 123567777765 2 22 344443332245888999999999987
Q ss_pred EeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC
Q 039497 453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532 (642)
Q Consensus 453 ~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~ 532 (642)
.... ....+.++|++ ++. +..+.. .....+.|||+|++|++++..+ ....|.+||+... +.+....
T Consensus 77 i~g~-~~~~v~lyd~~-~~~---i~~~~~--~~~n~i~wsP~G~~l~~~g~~n-----~~G~l~~wd~~~~--~~i~~~~ 142 (194)
T PF08662_consen 77 IYGS-MPAKVTLYDVK-GKK---IFSFGT--QPRNTISWSPDGRFLVLAGFGN-----LNGDLEFWDVRKK--KKISTFE 142 (194)
T ss_pred EEcc-CCcccEEEcCc-ccE---eEeecC--CCceEEEECCCCCEEEEEEccC-----CCcEEEEEECCCC--EEeeccc
Confidence 7642 22378888887 443 455543 3446789999999999987543 2235899999743 3343323
Q ss_pred CCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeec
Q 039497 533 PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL 595 (642)
Q Consensus 533 ~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 595 (642)
+. ....+.|||||++|+......... ....+.+|+..|..+.+.
T Consensus 143 ~~--------~~t~~~WsPdGr~~~ta~t~~r~~-----------~dng~~Iw~~~G~~l~~~ 186 (194)
T PF08662_consen 143 HS--------DATDVEWSPDGRYLATATTSPRLR-----------VDNGFKIWSFQGRLLYKK 186 (194)
T ss_pred cC--------cEEEEEEcCCCCEEEEEEecccee-----------ccccEEEEEecCeEeEec
Confidence 22 357899999999999876542110 112556667777655443
No 107
>PTZ00421 coronin; Provisional
Probab=99.21 E-value=5.1e-09 Score=110.03 Aligned_cols=199 Identities=11% Similarity=0.094 Sum_probs=127.8
Q ss_pred cCCceeeeeec-CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeE
Q 039497 372 DRTAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFL 450 (642)
Q Consensus 372 ~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l 450 (642)
.+.+..+.|+| |++.|+..+. ++.+++|++.. .+. ..........+..+. ..+..+.|+|++..+
T Consensus 75 ~~~V~~v~fsP~d~~~LaSgS~-------DgtIkIWdi~~--~~~----~~~~~~~l~~L~gH~-~~V~~l~f~P~~~~i 140 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTASE-------DGTIMGWGIPE--EGL----TQNISDPIVHLQGHT-KKVGIVSFHPSAMNV 140 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEEeC-------CCEEEEEecCC--Ccc----ccccCcceEEecCCC-CcEEEEEeCcCCCCE
Confidence 56788999999 8888877763 78999999965 200 000000234555555 677889999987544
Q ss_pred EEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497 451 VFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530 (642)
Q Consensus 451 ~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 530 (642)
++++.. +..|.+||+.+++. +..+..+...+..++|+|||+.|+..+.++. |.+||+.+++...-..
T Consensus 141 LaSgs~--DgtVrIWDl~tg~~---~~~l~~h~~~V~sla~spdG~lLatgs~Dg~--------IrIwD~rsg~~v~tl~ 207 (493)
T PTZ00421 141 LASAGA--DMVVNVWDVERGKA---VEVIKCHSDQITSLEWNLDGSLLCTTSKDKK--------LNIIDPRDGTIVSSVE 207 (493)
T ss_pred EEEEeC--CCEEEEEECCCCeE---EEEEcCCCCceEEEEEECCCCEEEEecCCCE--------EEEEECCCCcEEEEEe
Confidence 444433 34799999998875 5666666667888999999998888876654 9999998776533222
Q ss_pred cCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeec-cCC-CCCCCCcEE
Q 039497 531 AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRL-TWN-GYENGTPAW 607 (642)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~l-t~~-~~~~~~~~~ 607 (642)
.+.+. ....+.|.+++..|+.+...... ...|.+||+.... +... ..+ ......+.|
T Consensus 208 -~H~~~------~~~~~~w~~~~~~ivt~G~s~s~-------------Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~ 267 (493)
T PTZ00421 208 -AHASA------KSQRCLWAKRKDLIITLGCSKSQ-------------QRQIMLWDTRKMASPYSTVDLDQSSALFIPFF 267 (493)
T ss_pred -cCCCC------cceEEEEcCCCCeEEEEecCCCC-------------CCeEEEEeCCCCCCceeEeccCCCCceEEEEE
Confidence 22220 22357899998887765532211 2378888886432 2222 111 123345789
Q ss_pred ecCCceEEee
Q 039497 608 HPGNQLDLGK 617 (642)
Q Consensus 608 s~dg~~~~~~ 617 (642)
++|+.+++..
T Consensus 268 d~d~~~L~lg 277 (493)
T PTZ00421 268 DEDTNLLYIG 277 (493)
T ss_pred cCCCCEEEEE
Confidence 9999776543
No 108
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.21 E-value=2e-07 Score=91.77 Aligned_cols=183 Identities=17% Similarity=0.190 Sum_probs=112.9
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
....|.|.| .|+... ..+..+++|.++....++-. +..+..+.|+|||..|++.+. ++.++||.++.
T Consensus 411 ~~~~fhpsg-~va~Gt---~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~-------d~~iyiy~Vs~- 478 (626)
T KOG2106|consen 411 ECADFHPSG-VVAVGT---ATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSH-------DNHIYIYRVSA- 478 (626)
T ss_pred eEeeccCcc-eEEEee---ccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecC-------CCeEEEEEECC-
Confidence 456788888 565532 34677888988865555544 566788999999999999985 78999999987
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC---------
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG--------- 482 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~--------- 482 (642)
+ +. +..++.......+.++.||+|+++|...+ ++.+|..|... .. .++++.
T Consensus 479 -~-----g~-----~y~r~~k~~gs~ithLDwS~Ds~~~~~~S---~d~eiLyW~~~--~~----~~~ts~kDvkW~t~~ 538 (626)
T KOG2106|consen 479 -N-----GR-----KYSRVGKCSGSPITHLDWSSDSQFLVSNS---GDYEILYWKPS--EC----KQITSVKDVKWATYT 538 (626)
T ss_pred -C-----Cc-----EEEEeeeecCceeEEeeecCCCceEEecc---CceEEEEEccc--cC----cccceecceeeeeeE
Confidence 3 22 34444333324677899999999987665 56677777432 21 232221
Q ss_pred ------------CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEc
Q 039497 483 ------------PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS 550 (642)
Q Consensus 483 ------------~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S 550 (642)
...+...+-|.+.+.++.... .+..+||.+.-..-...-....++.. .+..++|+
T Consensus 539 c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd------~g~v~lf~yPc~s~rA~~he~~ghs~-------~vt~V~Fl 605 (626)
T KOG2106|consen 539 CTLGFEVFGGSDGTDINAVARSHCEKLLASGDD------FGKVHLFSYPCSSPRAPSHEYGGHSS-------HVTNVAFL 605 (626)
T ss_pred EEEEEEEecccCCchHHHhhhhhhhhhhhcccc------CceEEEEccccCCCcccceeeccccc-------eeEEEEEe
Confidence 111122233444443333322 25677887776543332222234444 67788998
Q ss_pred CCCCEEEEEE
Q 039497 551 ADGEWLLFTA 560 (642)
Q Consensus 551 ~Dg~~l~~~~ 560 (642)
-+-..++.+.
T Consensus 606 ~~d~~li~tg 615 (626)
T KOG2106|consen 606 CKDSHLISTG 615 (626)
T ss_pred eCCceEEecC
Confidence 7777666555
No 109
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=3.2e-08 Score=98.86 Aligned_cols=315 Identities=16% Similarity=0.143 Sum_probs=180.0
Q ss_pred cccceeecCCcEEEEEEeccCCceeeEEEEEeecC------CCCcccCCeecCCCCEEEEEEeecCCCC----CCcccce
Q 039497 245 CFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLN------PNFHHYNPFVSANSEFIGYHRFRGESTE----GQSTIPH 314 (642)
Q Consensus 245 ~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~------~~~~~~~~~~spDg~~l~~~~~~~~~~~----~~~~~~~ 314 (642)
....++|++|+.+++.... .+++++.... .........+||-|.+|........... +.....|
T Consensus 37 ~~v~~~S~~G~lfA~~~~~------~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQ------VVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred ceeEEEcCCCcEEEEEcCC------eEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 4456789999999996433 4556655211 1124566788888888766432221110 1111122
Q ss_pred EeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEE-eecCCceeeeeecCCCEEEEEEcC
Q 039497 315 LEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTL-IKDRTAFYNSWSPTEKHVIYTSTG 393 (642)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~~~~spdg~~l~~~~~~ 393 (642)
-....-....++.....+..+.||+|....+... .+.++.++..+.....- .....+..+.+||-+..-.++...
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv----~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyv 186 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAARLV----SNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYV 186 (566)
T ss_pred eeccceehhheehhhhcCcccccccchhhhhhhh----cceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEc
Confidence 1111111111222222335789999998666643 46788888776432221 125677888888864433333322
Q ss_pred CCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCC---------CCceeEEE
Q 039497 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR---------SGHKNLFV 464 (642)
Q Consensus 394 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~---------~g~~~l~~ 464 (642)
+.-.+....++||.+.. .+..-+-..+.+... .--.+.|.+-|.-|+..... -|...||+
T Consensus 187 Pe~kGaPa~vri~~~~~--------~~~~~~~a~ksFFka---dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyl 255 (566)
T KOG2315|consen 187 PEKKGAPASVRIYKYPE--------EGQHQPVANKSFFKA---DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYL 255 (566)
T ss_pred cCCCCCCcEEEEecccc--------ccccchhhhcccccc---ceeEEEeccCCceEEEEEEEeecCCCccccccceEEE
Confidence 21122345677777754 121000011111111 12246788888876654321 25669999
Q ss_pred EECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccc
Q 039497 465 LDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERI 544 (642)
Q Consensus 465 ~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 544 (642)
++++ |+. ....|.. .+.++.+.|+|+|+.+++...- ++..+-++|+++.-.- ....+ .-
T Consensus 256 l~t~-g~s--~~V~L~k-~GPVhdv~W~~s~~EF~VvyGf------MPAkvtifnlr~~~v~-df~eg----------pR 314 (566)
T KOG2315|consen 256 LATQ-GES--VSVPLLK-EGPVHDVTWSPSGREFAVVYGF------MPAKVTIFNLRGKPVF-DFPEG----------PR 314 (566)
T ss_pred EEec-Cce--EEEecCC-CCCceEEEECCCCCEEEEEEec------ccceEEEEcCCCCEeE-eCCCC----------Cc
Confidence 9998 542 1344543 4678899999999998877654 4556889998764332 22222 33
Q ss_pred cceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCC-CCCCCcEEecCCceEEee
Q 039497 545 NHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNG-YENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 545 ~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~-~~~~~~~~s~dg~~~~~~ 617 (642)
..+.|+|-|+.|++..-.. ..+++-+||... .+.|.... .+..-..|+|||++|++.
T Consensus 315 N~~~fnp~g~ii~lAGFGN--------------L~G~mEvwDv~n--~K~i~~~~a~~tt~~eW~PdGe~flTA 372 (566)
T KOG2315|consen 315 NTAFFNPHGNIILLAGFGN--------------LPGDMEVWDVPN--RKLIAKFKAANTTVFEWSPDGEYFLTA 372 (566)
T ss_pred cceEECCCCCEEEEeecCC--------------CCCceEEEeccc--hhhccccccCCceEEEEcCCCcEEEEE
Confidence 5789999999888876543 356888888766 23333322 233567999999999875
No 110
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.20 E-value=3.1e-10 Score=110.86 Aligned_cols=245 Identities=15% Similarity=0.102 Sum_probs=171.6
Q ss_pred cEEcCCCCEEEEEecCCCceeEEEEECCCCCee-EEe------ecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW-TLI------KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR 407 (642)
Q Consensus 335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~-~l~------~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~ 407 (642)
..+|...++++. .++..|-+||+.....+ .+. .+..+.....+|||+.|++... ...+.||+
T Consensus 425 vtIS~~trhVyT----gGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGe-------astlsiWD 493 (705)
T KOG0639|consen 425 VTISNPTRHVYT----GGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE-------ASTLSIWD 493 (705)
T ss_pred EEecCCcceeEe----cCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccc-------cceeeeee
Confidence 356666666555 45677777787654322 221 2567888999999999998763 67899999
Q ss_pred EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccc
Q 039497 408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT 487 (642)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~ 487 (642)
+...+. . ....|+... -....++.|||.+ ++|+.-.+| .|.+||+..... ++++..+.....
T Consensus 494 LAapTp------r-----ikaeltssa-paCyALa~spDak-vcFsccsdG--nI~vwDLhnq~~---VrqfqGhtDGas 555 (705)
T KOG0639|consen 494 LAAPTP------R-----IKAELTSSA-PACYALAISPDAK-VCFSCCSDG--NIAVWDLHNQTL---VRQFQGHTDGAS 555 (705)
T ss_pred ccCCCc------c-----hhhhcCCcc-hhhhhhhcCCccc-eeeeeccCC--cEEEEEccccee---eecccCCCCCce
Confidence 976111 0 222333332 3455689999985 677776555 788899987665 788888877888
Q ss_pred ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA 567 (642)
Q Consensus 488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~ 567 (642)
.+..|+||..|+...-++. |..||+..+.. +....... .+.++...|.+.||++.-...
T Consensus 556 cIdis~dGtklWTGGlDnt--------vRcWDlregrq--lqqhdF~S-------QIfSLg~cP~~dWlavGMens---- 614 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGGLDNT--------VRCWDLREGRQ--LQQHDFSS-------QIFSLGYCPTGDWLAVGMENS---- 614 (705)
T ss_pred eEEecCCCceeecCCCccc--------eeehhhhhhhh--hhhhhhhh-------hheecccCCCccceeeecccC----
Confidence 8999999999988877664 89999976543 32223333 567888999999999876533
Q ss_pred CCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeecCCCc-ccccceeee--e--ccc-ceeccC
Q 039497 568 EPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLED-DIGDKLRGQ--F--DEP-LWISCD 641 (642)
Q Consensus 568 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~~-~~~~~~~~~--~--~~~-~~~~~~ 641 (642)
++++....+.+..+|.-+..-+.++.|++=|+||++-....- ..=.-+||+ | .|. ..++||
T Consensus 615 -------------~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCD 681 (705)
T KOG0639|consen 615 -------------NVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCD 681 (705)
T ss_pred -------------cEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeee
Confidence 889999899889999998888899999999999987532210 112224444 3 233 479998
Q ss_pred C
Q 039497 642 F 642 (642)
Q Consensus 642 ~ 642 (642)
+
T Consensus 682 I 682 (705)
T KOG0639|consen 682 I 682 (705)
T ss_pred e
Confidence 5
No 111
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.19 E-value=6.8e-09 Score=102.15 Aligned_cols=199 Identities=16% Similarity=0.098 Sum_probs=115.8
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEE
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIA 406 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~ 406 (642)
...|+|+.+..+.....++.-.||-++-...+ .++.. .-.+..-+|+|||+.|+.... ++.+++|
T Consensus 273 ~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q-~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~-------DGSIQ~W 344 (641)
T KOG0772|consen 273 CGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ-LQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCL-------DGSIQIW 344 (641)
T ss_pred ccccccCcccceEEecCCCcEEEEecCCchhh-eeEEeeccCCCcccCceeeecCCCcchhhhccc-------CCceeee
Confidence 44899998887776655555555544432222 33332 123556799999999887764 7899999
Q ss_pred EEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC--CCC
Q 039497 407 RVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD--GPW 484 (642)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~--~~~ 484 (642)
+... - ...-....+.-.... ..+..++||+||++|+..+. +..|.+||+..-+. .+...+. ...
T Consensus 345 ~~~~--~------~v~p~~~vk~AH~~g-~~Itsi~FS~dg~~LlSRg~---D~tLKvWDLrq~kk--pL~~~tgL~t~~ 410 (641)
T KOG0772|consen 345 DKGS--R------TVRPVMKVKDAHLPG-QDITSISFSYDGNYLLSRGF---DDTLKVWDLRQFKK--PLNVRTGLPTPF 410 (641)
T ss_pred ecCC--c------ccccceEeeeccCCC-CceeEEEeccccchhhhccC---CCceeeeecccccc--chhhhcCCCccC
Confidence 9633 1 100000112222222 36788999999999986664 44799999875442 0121121 123
Q ss_pred cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497 485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA 564 (642)
Q Consensus 485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~ 564 (642)
.-..+.||||.+.|+....-.+. .....|+.+|..+=....-. .... -.+....|.|-=..|+..+.+++
T Consensus 411 ~~tdc~FSPd~kli~TGtS~~~~--~~~g~L~f~d~~t~d~v~ki--~i~~------aSvv~~~WhpkLNQi~~gsgdG~ 480 (641)
T KOG0772|consen 411 PGTDCCFSPDDKLILTGTSAPNG--MTAGTLFFFDRMTLDTVYKI--DIST------ASVVRCLWHPKLNQIFAGSGDGT 480 (641)
T ss_pred CCCccccCCCceEEEecccccCC--CCCceEEEEeccceeeEEEe--cCCC------ceEEEEeecchhhheeeecCCCc
Confidence 34678999999877666554332 13335888887553332211 1111 04556678776666666666653
No 112
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=99.18 E-value=2.8e-08 Score=104.26 Aligned_cols=260 Identities=16% Similarity=0.130 Sum_probs=162.4
Q ss_pred cceeecCCcEEEEEEeccCCceeeEEEEEeecCCC-------CcccCCeecCCCCEEEEEEeecCCC---CCCcccceEe
Q 039497 247 TPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPN-------FHHYNPFVSANSEFIGYHRFRGEST---EGQSTIPHLE 316 (642)
Q Consensus 247 ~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~-------~~~~~~~~spDg~~l~~~~~~~~~~---~~~~~~~~~~ 316 (642)
...+||||++|+|.....|+....++++|+..+.. .....+.|++||+.++|.+.+.... .+....++..
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 45679999999999999999999999999943321 1111279999999999998766422 1113456666
Q ss_pred eccCCCce-eEEeeeCC--C---ccEEcCCCCEEEEEecCCCc-eeEEEEECCCC-----CeeEEeec-CCceeeeeecC
Q 039497 317 PVASPVKE-LRMLRLNG--S---FPSFSPDGGLIVFNHDFELN-AGIKIAKSDGS-----KRWTLIKD-RTAFYNSWSPT 383 (642)
Q Consensus 317 ~~~~~~~~-~~~~~~~~--~---~~~~spdg~~l~~~~~~~~~-~~l~~~d~~~~-----~~~~l~~~-~~~~~~~~spd 383 (642)
.+...... ..+..... . .+..|+||++|++....... ..+|++++..+ ..+.+... ....... ...
T Consensus 208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v-~~~ 286 (414)
T PF02897_consen 208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV-DHH 286 (414)
T ss_dssp ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE-EEE
T ss_pred ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE-Ecc
Confidence 76655443 22222222 1 34679999998886665555 89999999875 44555542 2222222 223
Q ss_pred CCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceE-EccccCCCCccCcEECCCCCeEEEEeCCCCceeE
Q 039497 384 EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK-ILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNL 462 (642)
Q Consensus 384 g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l 462 (642)
|..+++.++ .+....+|+.++. + .. ... ... .+..+. ....--.++..+++|++...+++..+|
T Consensus 287 ~~~~yi~Tn-----~~a~~~~l~~~~l--~-----~~-~~~-~~~~~l~~~~-~~~~l~~~~~~~~~Lvl~~~~~~~~~l 351 (414)
T PF02897_consen 287 GDRLYILTN-----DDAPNGRLVAVDL--A-----DP-SPA-EWWTVLIPED-EDVSLEDVSLFKDYLVLSYRENGSSRL 351 (414)
T ss_dssp TTEEEEEE------TT-TT-EEEEEET--T-----ST-SGG-GEEEEEE--S-SSEEEEEEEEETTEEEEEEEETTEEEE
T ss_pred CCEEEEeeC-----CCCCCcEEEEecc--c-----cc-ccc-cceeEEcCCC-CceeEEEEEEECCEEEEEEEECCccEE
Confidence 777777775 3456677888877 2 11 100 122 344333 322333556678899998888899999
Q ss_pred EEEECC-CCccccceeeCCC-CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497 463 FVLDAV-NGEFNGDIRQLTD-GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530 (642)
Q Consensus 463 ~~~d~~-~g~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 530 (642)
.++++. +... ..+.- ..+.+......++++.+.|....-. .+..+|.+|+++++.+.+..
T Consensus 352 ~v~~~~~~~~~----~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~----~P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 352 RVYDLDDGKES----REIPLPEAGSVSGVSGDFDSDELRFSYSSFT----TPPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp EEEETT-TEEE----EEEESSSSSEEEEEES-TT-SEEEEEEEETT----EEEEEEEEETTTTCEEEEEE
T ss_pred EEEECCCCcEE----eeecCCcceEEeccCCCCCCCEEEEEEeCCC----CCCEEEEEECCCCCEEEEEe
Confidence 999998 4442 33332 2233445566778888888877654 67899999999999887753
No 113
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=7.6e-09 Score=93.92 Aligned_cols=192 Identities=20% Similarity=0.266 Sum_probs=128.4
Q ss_pred ccEEcCC-CCEEEEEecCCCceeEEEEECCCCCeeEEe---e---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEE
Q 039497 334 FPSFSPD-GGLIVFNHDFELNAGIKIAKSDGSKRWTLI---K---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIA 406 (642)
Q Consensus 334 ~~~~spd-g~~l~~~~~~~~~~~l~~~d~~~~~~~~l~---~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~ 406 (642)
..+|+|- |..|+.. .....|.+++..++...... . ...+..++|+|.|++|+..+. +....||
T Consensus 19 ~~awhp~~g~ilAsc---g~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF-------D~t~~Iw 88 (312)
T KOG0645|consen 19 SVAWHPGKGVILASC---GTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF-------DATVVIW 88 (312)
T ss_pred EEEeccCCceEEEee---cCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec-------cceEEEe
Confidence 4588998 7644443 33467777777754333222 1 457889999999999999886 5677777
Q ss_pred EEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcc
Q 039497 407 RVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID 486 (642)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~ 486 (642)
.-.. . .=+ ....|..++ ..+..++||++|++|+..+. ...+|+|.++.+..-.-...|..+...+
T Consensus 89 ~k~~--~------efe---cv~~lEGHE-nEVK~Vaws~sG~~LATCSR---DKSVWiWe~deddEfec~aVL~~HtqDV 153 (312)
T KOG0645|consen 89 KKED--G------EFE---CVATLEGHE-NEVKCVAWSASGNYLATCSR---DKSVWIWEIDEDDEFECIAVLQEHTQDV 153 (312)
T ss_pred ecCC--C------cee---EEeeeeccc-cceeEEEEcCCCCEEEEeeC---CCeEEEEEecCCCcEEEEeeeccccccc
Confidence 6432 1 100 445555565 77888999999999998874 3479999987554311234567788889
Q ss_pred cceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC-CCceEEee-ecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497 487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD-GSGLRRIH-VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA 564 (642)
Q Consensus 487 ~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~-~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~ 564 (642)
..+.|+|....|+-.+.++. |.+|.-. .+....+. ..+..+ -+..+.|.+.|.+|+..+++..
T Consensus 154 K~V~WHPt~dlL~S~SYDnT--------Ik~~~~~~dddW~c~~tl~g~~~-------TVW~~~F~~~G~rl~s~sdD~t 218 (312)
T KOG0645|consen 154 KHVIWHPTEDLLFSCSYDNT--------IKVYRDEDDDDWECVQTLDGHEN-------TVWSLAFDNIGSRLVSCSDDGT 218 (312)
T ss_pred cEEEEcCCcceeEEeccCCe--------EEEEeecCCCCeeEEEEecCccc-------eEEEEEecCCCceEEEecCCcc
Confidence 99999998776665555543 5555544 44443322 234443 4788999999999998888765
Q ss_pred c
Q 039497 565 V 565 (642)
Q Consensus 565 ~ 565 (642)
.
T Consensus 219 v 219 (312)
T KOG0645|consen 219 V 219 (312)
T ss_pred e
Confidence 4
No 114
>PTZ00420 coronin; Provisional
Probab=99.17 E-value=2.7e-08 Score=105.24 Aligned_cols=221 Identities=10% Similarity=0.056 Sum_probs=134.6
Q ss_pred CccEEcCC-CCEEEEEecCCCceeEEEEECCCCCe--e-------EEee-cCCceeeeeecCCCEEEEEEcCCCcccCCC
Q 039497 333 SFPSFSPD-GGLIVFNHDFELNAGIKIAKSDGSKR--W-------TLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERA 401 (642)
Q Consensus 333 ~~~~~spd-g~~l~~~~~~~~~~~l~~~d~~~~~~--~-------~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 401 (642)
....|+|+ ++.|+..+. ...|.++++..+.. . .+.. ...+..+.|+|++..++.+. ..++
T Consensus 78 ~~lafsP~~~~lLASgS~---DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg------S~Dg 148 (568)
T PTZ00420 78 LDLQFNPCFSEILASGSE---DLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS------GFDS 148 (568)
T ss_pred EEEEEcCCCCCEEEEEeC---CCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE------eCCC
Confidence 35689997 666666543 34666777654321 1 1111 45688999999998776554 2378
Q ss_pred eEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC
Q 039497 402 TVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD 481 (642)
Q Consensus 402 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~ 481 (642)
.++||++.. +. ....+. .. ..+..+.|+|||+.|+.++. ...|.+||+.+++. +..+..
T Consensus 149 tIrIWDl~t--------g~-----~~~~i~-~~-~~V~SlswspdG~lLat~s~---D~~IrIwD~Rsg~~---i~tl~g 207 (568)
T PTZ00420 149 FVNIWDIEN--------EK-----RAFQIN-MP-KKLSSLKWNIKGNLLSGTCV---GKHMHIIDPRKQEI---ASSFHI 207 (568)
T ss_pred eEEEEECCC--------Cc-----EEEEEe-cC-CcEEEEEECCCCCEEEEEec---CCEEEEEECCCCcE---EEEEec
Confidence 999999965 22 233333 22 46778999999998876652 23799999998875 555554
Q ss_pred CCCcccc-----eeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC-CceEEe-eecCCCCCCCcccccccceEEcCC-C
Q 039497 482 GPWIDTM-----PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG-SGLRRI-HVAGPEGSGDVDRERINHVCFSAD-G 553 (642)
Q Consensus 482 ~~~~~~~-----~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l-~~~~~~~~~~~~~~~~~~~~~S~D-g 553 (642)
+.+.... ..|++|+++|+..+.+.. ...+|.+||+.. ++.... ......+ ...+.|.++ |
T Consensus 208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~----~~R~VkLWDlr~~~~pl~~~~ld~~~~--------~L~p~~D~~tg 275 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKN----NMREMKLWDLKNTTSALVTMSIDNASA--------PLIPHYDESTG 275 (568)
T ss_pred ccCCceeEEEEeeeEcCCCCEEEEEEcCCC----CccEEEEEECCCCCCceEEEEecCCcc--------ceEEeeeCCCC
Confidence 4433211 235689998888776542 234699999974 333222 2211111 123455455 5
Q ss_pred CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCC--CCCCCcEEecCCc
Q 039497 554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNG--YENGTPAWHPGNQ 612 (642)
Q Consensus 554 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~--~~~~~~~~s~dg~ 612 (642)
..++....++ .|++|++..+.+..|.... .....++|.|...
T Consensus 276 ~l~lsGkGD~-----------------tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 276 LIYLIGKGDG-----------------NCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred CEEEEEECCC-----------------eEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence 5444444333 6888888777777776533 2235678888753
No 115
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.17 E-value=1.6e-09 Score=105.84 Aligned_cols=274 Identities=12% Similarity=0.073 Sum_probs=175.6
Q ss_pred cceEee-CCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEE
Q 039497 195 WPTWSG-DSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI 273 (642)
Q Consensus 195 ~~~wsp-dg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~ 273 (642)
.+.|.| .+.++.+. ..++...||-+--++. ..+.+..+...+..+.|+.+|..++.++-+. .+.+
T Consensus 219 ai~~fp~~~hLlLS~-gmD~~vklW~vy~~~~--------~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~-----~lKl 284 (503)
T KOG0282|consen 219 AIQWFPKKGHLLLSG-GMDGLVKLWNVYDDRR--------CLRTFKGHRKPVRDASFNNCGTSFLSASFDR-----FLKL 284 (503)
T ss_pred hhhhccceeeEEEec-CCCceEEEEEEecCcc--------eehhhhcchhhhhhhhccccCCeeeeeecce-----eeee
Confidence 468999 55666665 6677555554333333 5566677777788999999999999865444 8999
Q ss_pred EEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCc
Q 039497 274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN 353 (642)
Q Consensus 274 ~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 353 (642)
||++++.. ..+... ........+.||+..+++++. ..
T Consensus 285 wDtETG~~----------------~~~f~~-------------------------~~~~~cvkf~pd~~n~fl~G~--sd 321 (503)
T KOG0282|consen 285 WDTETGQV----------------LSRFHL-------------------------DKVPTCVKFHPDNQNIFLVGG--SD 321 (503)
T ss_pred eccccceE----------------EEEEec-------------------------CCCceeeecCCCCCcEEEEec--CC
Confidence 99855320 000000 011124478999976777653 35
Q ss_pred eeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497 354 AGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT 431 (642)
Q Consensus 354 ~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 431 (642)
..|..+|..+++..+-.. -+.+..+.|-++|++++.++. +..++||.... . - ..+.+.
T Consensus 322 ~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD-------dks~riWe~~~--~------v-----~ik~i~ 381 (503)
T KOG0282|consen 322 KKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD-------DKSVRIWENRI--P------V-----PIKNIA 381 (503)
T ss_pred CcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc-------CccEEEEEcCC--C------c-----cchhhc
Confidence 678889998888554433 456888999999999988874 67999999865 1 1 333343
Q ss_pred ccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC--CCCcccceeEecCCCEEEEEecCCCCCC
Q 039497 432 KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD--GPWIDTMPSWSPKGDLIAFSSNRHNPDN 509 (642)
Q Consensus 432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~--~~~~~~~~~~spdG~~l~~~~~~~~~~~ 509 (642)
.........+..+|++++++..+..+ .|+++.+.-.-....-+.... ..+....+.|||||++|+....++.
T Consensus 382 ~~~~hsmP~~~~~P~~~~~~aQs~dN---~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~--- 455 (503)
T KOG0282|consen 382 DPEMHTMPCLTLHPNGKWFAAQSMDN---YIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK--- 455 (503)
T ss_pred chhhccCcceecCCCCCeehhhccCc---eEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc---
Confidence 33323455678999999998777543 566665431100000011221 2345566799999999988887765
Q ss_pred CCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497 510 VEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA 564 (642)
Q Consensus 510 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~ 564 (642)
++.||-++-++..... .+.. .+..+.|.|-....+.++.-.+
T Consensus 456 -----v~~wdwkt~kl~~~lk-ah~~-------~ci~v~wHP~e~Skvat~~w~G 497 (503)
T KOG0282|consen 456 -----VNFWDWKTTKLVSKLK-AHDQ-------PCIGVDWHPVEPSKVATCGWDG 497 (503)
T ss_pred -----EEEeechhhhhhhccc-cCCc-------ceEEEEecCCCcceeEecccCc
Confidence 9999987655443333 2233 5678899998777666665544
No 116
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=1e-06 Score=92.73 Aligned_cols=460 Identities=12% Similarity=0.116 Sum_probs=247.6
Q ss_pred eeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCccccccccCCCE--EEEEEeccCCC
Q 039497 36 EHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNK--LFFISAHEQPD 113 (642)
Q Consensus 36 ~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~ 113 (642)
..|+-.|.+.++...|. |++...+ ++..|-...+|.+.... + ..+-..++.|-+...+.-.. |+-++. ++
T Consensus 44 i~rFdeHdGpVRgv~FH-~~qplFV-SGGDDykIkVWnYk~rr--c-lftL~GHlDYVRt~~FHheyPWIlSASD-DQ-- 115 (1202)
T KOG0292|consen 44 IDRFDEHDGPVRGVDFH-PTQPLFV-SGGDDYKIKVWNYKTRR--C-LFTLLGHLDYVRTVFFHHEYPWILSASD-DQ-- 115 (1202)
T ss_pred HhhhhccCCccceeeec-CCCCeEE-ecCCccEEEEEecccce--e-hhhhccccceeEEeeccCCCceEEEccC-CC--
Confidence 57888999999999999 9998544 44444567889873222 0 11111233333333333332 222222 11
Q ss_pred cccccccceEEEEccCCc-eEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCcee-----
Q 039497 114 QIFKSWSALYSTDLKASK-FTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRV----- 187 (642)
Q Consensus 114 ~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----- 187 (642)
.|.+.+-.+++ .-.||.+..+.++++|-|--..|+.++-+. .|.+||+.+-..+.
T Consensus 116 -------TIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQ------------TVRVWDisGLRkk~~~pg~ 176 (1202)
T KOG0292|consen 116 -------TIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQ------------TVRVWDISGLRKKNKAPGS 176 (1202)
T ss_pred -------eEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccc------------eEEEEeecchhccCCCCCC
Confidence 34444766655 455777888899999999888999887665 56677764432221
Q ss_pred ------------------------EeecC--C-CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCC
Q 039497 188 ------------------------IVCER--G-GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTP 240 (642)
Q Consensus 188 ------------------------l~~~~--~-~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~ 240 (642)
+...+ + +|.+|.|.-.++++. +.|-...+|+++....= +....-+
T Consensus 177 ~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG-~DDRqVKlWrmnetKaW-------EvDtcrg 248 (1202)
T KOG0292|consen 177 LEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSG-ADDRQVKLWRMNETKAW-------EVDTCRG 248 (1202)
T ss_pred chhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEec-CCcceeeEEEeccccce-------eehhhhc
Confidence 11111 1 467888877777776 55667799999754320 2222334
Q ss_pred CCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC
Q 039497 241 PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS 320 (642)
Q Consensus 241 ~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 320 (642)
+-..+....|.|.-..|+..+. ...|++||+........ +-.+..+..+....... .++-..-++
T Consensus 249 H~nnVssvlfhp~q~lIlSnsE-----DksirVwDm~kRt~v~t----frrendRFW~laahP~l------NLfAAgHDs 313 (1202)
T KOG0292|consen 249 HYNNVSSVLFHPHQDLILSNSE-----DKSIRVWDMTKRTSVQT----FRRENDRFWILAAHPEL------NLFAAGHDS 313 (1202)
T ss_pred ccCCcceEEecCccceeEecCC-----CccEEEEecccccceee----eeccCCeEEEEEecCCc------ceeeeecCC
Confidence 4446777788887777777443 44899999943321111 21222222222221110 000000000
Q ss_pred CCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-------cCCceeeeeecCCCEEEEEEcC
Q 039497 321 PVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-------DRTAFYNSWSPTEKHVIYTSTG 393 (642)
Q Consensus 321 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-------~~~~~~~~~spdg~~l~~~~~~ 393 (642)
.+......-..|++.=.++.|.|+.+ ..|+.+|+.+.+...+.. .....++.++|..+.++.+++
T Consensus 314 ---Gm~VFkleRErpa~~v~~n~LfYvkd----~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~- 385 (1202)
T KOG0292|consen 314 ---GMIVFKLERERPAYAVNGNGLFYVKD----RFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSN- 385 (1202)
T ss_pred ---ceEEEEEcccCceEEEcCCEEEEEcc----ceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEec-
Confidence 01111122223444445677888653 688888988765555544 234667899999888888874
Q ss_pred CCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccc
Q 039497 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN 473 (642)
Q Consensus 394 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~ 473 (642)
.+.+...++.+...++ +.. ..+....++ + .. ..|-.-++..++..+ ..++.+-++....
T Consensus 386 ----~~n~~y~L~~ipk~~~-----~~~----~~~~~~k~t-G-~~-a~fvarNrfavl~k~---~~~v~ik~l~N~v-- 444 (1202)
T KOG0292|consen 386 ----LDNGEYELVQIPKDSD-----GVS----DGKDVKKGT-G-EG-ALFVARNRFAVLDKS---NEQVVIKNLKNKV-- 444 (1202)
T ss_pred ----cCCCeEEEEEecCccc-----ccC----CchhhhcCC-C-Cc-eEEEEecceEEEEec---CcceEEecccchh--
Confidence 3567778888765222 110 111112222 1 11 222222333333331 2245555655333
Q ss_pred cceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCC
Q 039497 474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADG 553 (642)
Q Consensus 474 ~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg 553 (642)
.+.+... .....+.+.-.|..|+ .+.+. |.++|+..++..--.. .. .+.-+.||.|+
T Consensus 445 --tkkl~~~-~~~~~IF~ag~g~lll-~~~~~---------v~lfdvQq~~~~~si~--~s--------~vkyvvws~dm 501 (1202)
T KOG0292|consen 445 --TKKLLLP-ESTDDIFYAGTGNLLL-RSPDS---------VTLFDVQQKKKVGSIK--VS--------KVKYVVWSNDM 501 (1202)
T ss_pred --hhcccCc-ccccceeeccCccEEE-EcCCe---------EEEEEeecceEEEEEe--cC--------ceeEEEEcCcc
Confidence 2333322 2233456666666443 33332 8888987654432221 11 45678999999
Q ss_pred CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEe
Q 039497 554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLG 616 (642)
Q Consensus 554 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~ 616 (642)
.++++.+.- .|..++..=..+..+. ....+.+-+|..+|-++-+
T Consensus 502 ~~vAll~Kh------------------~i~i~~kkL~l~~sih-Etiriksgawde~gVfiYt 545 (1202)
T KOG0292|consen 502 SRVALLSKH------------------TITIADKKLELLCSIH-ETIRIKSGAWDEDGVFIYT 545 (1202)
T ss_pred chhhhcccc------------------eEEEEecchhheecch-heeEeeeceeccCceEEEE
Confidence 999888743 5776664322222111 1234567789888876643
No 117
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.15 E-value=7.8e-10 Score=102.29 Aligned_cols=280 Identities=16% Similarity=0.183 Sum_probs=173.4
Q ss_pred ccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCc
Q 039497 244 HCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVK 323 (642)
Q Consensus 244 ~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (642)
.+....|||||++|+..+. ..-|.+|+...+..... |-|...+
T Consensus 215 h~EcA~FSPDgqyLvsgSv-----DGFiEVWny~~GKlrKD-----------LkYQAqd--------------------- 257 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSV-----DGFIEVWNYTTGKLRKD-----------LKYQAQD--------------------- 257 (508)
T ss_pred chhheeeCCCCceEeeccc-----cceeeeehhccchhhhh-----------hhhhhhc---------------------
Confidence 4556789999999998443 44788888744321100 1111000
Q ss_pred eeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeE-Ee--ecCCceeeeeecCCCEEEEEEcCCCcccCC
Q 039497 324 ELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWT-LI--KDRTAFYNSWSPTEKHVIYTSTGPIFQSER 400 (642)
Q Consensus 324 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~-l~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 400 (642)
..-........+.||.|...++..+. ++ .|-++.+.+|...+ .. ...++..+.||.|+..|+-.+. +
T Consensus 258 ~fMMmd~aVlci~FSRDsEMlAsGsq-DG--kIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sf-------D 327 (508)
T KOG0275|consen 258 NFMMMDDAVLCISFSRDSEMLASGSQ-DG--KIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASF-------D 327 (508)
T ss_pred ceeecccceEEEeecccHHHhhccCc-CC--cEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccc-------c
Confidence 00001111124578999888777544 34 44444555655322 21 2567889999999999988775 5
Q ss_pred CeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC
Q 039497 401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT 480 (642)
Q Consensus 401 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~ 480 (642)
..+++.-+.. |+ ..+.+..+. ..+....|++||.+|+.++.+ ..+.+|+.++++- +..+.
T Consensus 328 ~tvRiHGlKS--------GK-----~LKEfrGHs-Syvn~a~ft~dG~~iisaSsD---gtvkvW~~KtteC---~~Tfk 387 (508)
T KOG0275|consen 328 QTVRIHGLKS--------GK-----CLKEFRGHS-SYVNEATFTDDGHHIISASSD---GTVKVWHGKTTEC---LSTFK 387 (508)
T ss_pred ceEEEecccc--------ch-----hHHHhcCcc-ccccceEEcCCCCeEEEecCC---ccEEEecCcchhh---hhhcc
Confidence 5666666654 33 556666666 778889999999999988743 3788889888764 33332
Q ss_pred CC--CCcccceeEecCC-CEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEE
Q 039497 481 DG--PWIDTMPSWSPKG-DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL 557 (642)
Q Consensus 481 ~~--~~~~~~~~~spdG-~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~ 557 (642)
.. ...+.++..-|.. ..+++....+ .||++++.+--.+......-++ ..+.....||-|.++|
T Consensus 388 ~~~~d~~vnsv~~~PKnpeh~iVCNrsn--------tv~imn~qGQvVrsfsSGkREg------GdFi~~~lSpkGewiY 453 (508)
T KOG0275|consen 388 PLGTDYPVNSVILLPKNPEHFIVCNRSN--------TVYIMNMQGQVVRSFSSGKREG------GDFINAILSPKGEWIY 453 (508)
T ss_pred CCCCcccceeEEEcCCCCceEEEEcCCC--------eEEEEeccceEEeeeccCCccC------CceEEEEecCCCcEEE
Confidence 22 2334444444433 3344443333 3999999775555554432222 1455678999999998
Q ss_pred EEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497 558 FTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
....++ .+|.+...+|. .+.|..+...+..++.+|-..++++-...|
T Consensus 454 cigED~-----------------vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDg 501 (508)
T KOG0275|consen 454 CIGEDG-----------------VLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDG 501 (508)
T ss_pred EEccCc-----------------EEEEEEeecCceeeeeecccccccccccCcccchhhhhcccc
Confidence 887654 78888766555 556666777777888888777666554433
No 118
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.15 E-value=1.2e-09 Score=106.70 Aligned_cols=225 Identities=13% Similarity=0.107 Sum_probs=153.1
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
....|+++|..++.++. ...|.++|+++|+...-.. +..+..+.|.||+..++++. ..+..+..|++..
T Consensus 262 rd~~~s~~g~~fLS~sf---D~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G------~sd~ki~~wDiRs- 331 (503)
T KOG0282|consen 262 RDASFNNCGTSFLSASF---DRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVG------GSDKKIRQWDIRS- 331 (503)
T ss_pred hhhhccccCCeeeeeec---ceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEe------cCCCcEEEEeccc-
Confidence 45689999999888765 3678889999998766554 67788899999997777776 3488999999976
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC-Cccccee
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP-WIDTMPS 490 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~-~~~~~~~ 490 (642)
+. ..+....+- +.+..+.|-++|++++.+++. ..+.+|+...+-. ++.+.... .....+.
T Consensus 332 -------~k-----vvqeYd~hL-g~i~~i~F~~~g~rFissSDd---ks~riWe~~~~v~---ik~i~~~~~hsmP~~~ 392 (503)
T KOG0282|consen 332 -------GK-----VVQEYDRHL-GAILDITFVDEGRRFISSSDD---KSVRIWENRIPVP---IKNIADPEMHTMPCLT 392 (503)
T ss_pred -------hH-----HHHHHHhhh-hheeeeEEccCCceEeeeccC---ccEEEEEcCCCcc---chhhcchhhccCccee
Confidence 22 333333333 667789999999999887754 3666777665543 33333222 2334557
Q ss_pred EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc---eEEeee-cCCCCCCCcccccccceEEcCCCCEEEEEEecCCcc
Q 039497 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG---LRRIHV-AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVM 566 (642)
Q Consensus 491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~-~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~ 566 (642)
.+|.|++++..+.++. |+++.+.-.- .+.... ....+ ....+.|||||++|+....++
T Consensus 393 ~~P~~~~~~aQs~dN~--------i~ifs~~~~~r~nkkK~feGh~vaG-------ys~~v~fSpDG~~l~SGdsdG--- 454 (503)
T KOG0282|consen 393 LHPNGKWFAAQSMDNY--------IAIFSTVPPFRLNKKKRFEGHSVAG-------YSCQVDFSPDGRTLCSGDSDG--- 454 (503)
T ss_pred cCCCCCeehhhccCce--------EEEEecccccccCHhhhhcceeccC-------ceeeEEEcCCCCeEEeecCCc---
Confidence 8999999988887654 6666543210 011111 01122 456789999999998887765
Q ss_pred cCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCce-EEeec
Q 039497 567 AEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQL-DLGKL 618 (642)
Q Consensus 567 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~~-~~~~~ 618 (642)
.++.||..+-+ ...+-.+........|+|...- ++++.
T Consensus 455 --------------~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~ 494 (503)
T KOG0282|consen 455 --------------KVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCG 494 (503)
T ss_pred --------------cEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecc
Confidence 78888877644 5566666667788999998743 44444
No 119
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.14 E-value=1.1e-07 Score=96.01 Aligned_cols=232 Identities=17% Similarity=0.154 Sum_probs=139.9
Q ss_pred EcCCCCEEEEEecCCCceeEEEEECCCCC--e----eEEeecCCceeeeeec-CCCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497 337 FSPDGGLIVFNHDFELNAGIKIAKSDGSK--R----WTLIKDRTAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIARVS 409 (642)
Q Consensus 337 ~spdg~~l~~~~~~~~~~~l~~~d~~~~~--~----~~l~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~ 409 (642)
|..+.++++.--. ...+.|-++++.... . -.+.....+.++.|.| |..+|++.. +++.+.||.+.
T Consensus 587 fcan~~rvAVPL~-g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~-------ddg~i~lWr~~ 658 (1012)
T KOG1445|consen 587 FCANNKRVAVPLA-GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVAT-------DDGQINLWRLT 658 (1012)
T ss_pred eeeccceEEEEec-CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecc-------cCceEEEEEec
Confidence 4445556655222 223455555554321 1 1122245578899999 778888876 48999999998
Q ss_pred eecCCCCCCCCCcccc-ceEEccccCCCCccCcEECCCCCe-EEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccc
Q 039497 410 FQLDPSDDNNREEIPC-DVKILTKEETGNNAFPSCSPDGKF-LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT 487 (642)
Q Consensus 410 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~SpDg~~-l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~ 487 (642)
. + +..+... ....|+.+. ..+..+.|+|=..- |+.++ -+..|-+||+.+++. --.|..+...+.
T Consensus 659 a--~-----gl~e~~~tPe~~lt~h~-eKI~slRfHPLAadvLa~as---yd~Ti~lWDl~~~~~---~~~l~gHtdqIf 724 (1012)
T KOG1445|consen 659 A--N-----GLPENEMTPEKILTIHG-EKITSLRFHPLAADVLAVAS---YDSTIELWDLANAKL---YSRLVGHTDQIF 724 (1012)
T ss_pred c--C-----CCCcccCCcceeeeccc-ceEEEEEecchhhhHhhhhh---ccceeeeeehhhhhh---hheeccCcCcee
Confidence 7 4 2222111 334455554 66788889884433 33333 345899999998875 455777777788
Q ss_pred ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA 567 (642)
Q Consensus 488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~ 567 (642)
.++|||||++++....++. |.+|....++...-.-.+..+ ..--.+.|.-||+.|+.+.-+...
T Consensus 725 ~~AWSpdGr~~AtVcKDg~--------~rVy~Prs~e~pv~Eg~gpvg------tRgARi~wacdgr~viv~Gfdk~S-- 788 (1012)
T KOG1445|consen 725 GIAWSPDGRRIATVCKDGT--------LRVYEPRSREQPVYEGKGPVG------TRGARILWACDGRIVIVVGFDKSS-- 788 (1012)
T ss_pred EEEECCCCcceeeeecCce--------EEEeCCCCCCCccccCCCCcc------CcceeEEEEecCcEEEEecccccc--
Confidence 9999999999999988875 899988766543222112111 033468899999999888765432
Q ss_pred CCCCCCCCCCCCCcEEEEEcCCCceeeccC----CCCCCCCcEEecCCc-eEEee
Q 039497 568 EPVSWPNQFQPYGDLYVVKLDGSGLRRLTW----NGYENGTPAWHPGNQ-LDLGK 617 (642)
Q Consensus 568 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~----~~~~~~~~~~s~dg~-~~~~~ 617 (642)
..+|-+|+...-....|.. ..-...-|.|.+|.. +|++.
T Consensus 789 -----------eRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltG 832 (1012)
T KOG1445|consen 789 -----------ERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTG 832 (1012)
T ss_pred -----------hhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEec
Confidence 2356666654433222222 112234456666653 33443
No 120
>PRK10115 protease 2; Provisional
Probab=99.14 E-value=1.9e-07 Score=102.90 Aligned_cols=258 Identities=12% Similarity=0.060 Sum_probs=157.1
Q ss_pred cccceeecCCcEEEEEEeccCCceeeEEEEEeecCC--CCc----ccCCeecCCCCEEEEEEeecCCCCCCcccceEeec
Q 039497 245 CFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNP--NFH----HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPV 318 (642)
Q Consensus 245 ~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~--~~~----~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~ 318 (642)
+....+||||++|+|.....|.....|++.|+..+. ... .....|++|++.++|.+.+.... ....++...+
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~--~~~~v~~h~l 206 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTL--LPYQVWRHTI 206 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCC--CCCEEEEEEC
Confidence 445678999999999988889999999999995433 111 13579999999999988753211 1245677777
Q ss_pred cCCC--ceeEEeeeCC-C--ccEEcCCCCEEEEEecCCCceeEEEEEC--CCCCeeEEee-cCCceeeeeecCCCEEEEE
Q 039497 319 ASPV--KELRMLRLNG-S--FPSFSPDGGLIVFNHDFELNAGIKIAKS--DGSKRWTLIK-DRTAFYNSWSPTEKHVIYT 390 (642)
Q Consensus 319 ~~~~--~~~~~~~~~~-~--~~~~spdg~~l~~~~~~~~~~~l~~~d~--~~~~~~~l~~-~~~~~~~~~spdg~~l~~~ 390 (642)
.... ..+....... . ....+.|++++++.........+++++. ..++.+.+.. ..... ......+..+++.
T Consensus 207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ly~~ 285 (686)
T PRK10115 207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHE-YSLDHYQHRFYLR 285 (686)
T ss_pred CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCE-EEEEeCCCEEEEE
Confidence 6552 2222221111 1 1123558998877555555567888774 2333333333 22222 2222345667776
Q ss_pred EcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcccc-CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC
Q 039497 391 STGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE-ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN 469 (642)
Q Consensus 391 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~ 469 (642)
++. +..+..|+.++. .. .+ ..+.+..+ ....+..+.++ +++|++...+++...|++++..+
T Consensus 286 tn~-----~~~~~~l~~~~~--~~----~~-----~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~ 347 (686)
T PRK10115 286 SNR-----HGKNFGLYRTRV--RD----EQ-----QWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKT 347 (686)
T ss_pred EcC-----CCCCceEEEecC--CC----cc-----cCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCC
Confidence 642 345666777765 20 01 34455444 21345556665 66899988888999999999875
Q ss_pred CccccceeeCC-CCCCcccceeEe--cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497 470 GEFNGDIRQLT-DGPWIDTMPSWS--PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA 531 (642)
Q Consensus 470 g~~~~~~~~l~-~~~~~~~~~~~s--pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 531 (642)
++ +..|. ..+.......++ ++++.+++....-. .+..+|.+|+++++.+.++..
T Consensus 348 ~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~----~P~~~y~~d~~~~~~~~l~~~ 404 (686)
T PRK10115 348 RE----VIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMT----TPDTLFELDMDTGERRVLKQT 404 (686)
T ss_pred Cc----eEEecCCCCceEeeecccCCCCCceEEEEEecCC----CCCEEEEEECCCCcEEEEEec
Confidence 55 36555 333222333344 56666666665543 578899999998887777653
No 121
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.13 E-value=3.5e-08 Score=89.46 Aligned_cols=235 Identities=11% Similarity=0.060 Sum_probs=150.8
Q ss_pred EcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCC
Q 039497 337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS 415 (642)
Q Consensus 337 ~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 415 (642)
..-+.++++.. .....+.+||+++|+...... +..+..+.|+++|+.++++... .+.....+.++++.. +.+
T Consensus 60 id~~s~~liTG---SAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~--~mg~~~~v~~fdi~~--~~~ 132 (327)
T KOG0643|consen 60 IDWDSKHLITG---SADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDK--QMGYTCFVSVFDIRD--DSS 132 (327)
T ss_pred ecCCcceeeec---cccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehh--hcCcceEEEEEEccC--Chh
Confidence 34455655553 334678888999988655554 6778899999999999988753 223355677777764 211
Q ss_pred CCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee-CCCCCCcccceeEecC
Q 039497 416 DDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ-LTDGPWIDTMPSWSPK 494 (642)
Q Consensus 416 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~-l~~~~~~~~~~~~spd 494 (642)
.. ..++ ....+.... .......|+|-|+.|++... ...|-+||+.+|+. ... ...+...++.+++|||
T Consensus 133 ~~-~s~e---p~~kI~t~~-skit~a~Wg~l~~~ii~Ghe---~G~is~~da~~g~~---~v~s~~~h~~~Ind~q~s~d 201 (327)
T KOG0643|consen 133 DI-DSEE---PYLKIPTPD-SKITSALWGPLGETIIAGHE---DGSISIYDARTGKE---LVDSDEEHSSKINDLQFSRD 201 (327)
T ss_pred hh-cccC---ceEEecCCc-cceeeeeecccCCEEEEecC---CCcEEEEEcccCce---eeechhhhccccccccccCC
Confidence 00 1111 244454444 56677899999999887653 33789999999863 232 2334456788999999
Q ss_pred CCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCC
Q 039497 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPN 574 (642)
Q Consensus 495 G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~ 574 (642)
..+++..+.+.+ -.++|+.+-+... ....+. +++..+++|--..++.....+..
T Consensus 202 ~T~FiT~s~Dtt--------akl~D~~tl~v~K--ty~te~-------PvN~aaisP~~d~VilgGGqeA~--------- 255 (327)
T KOG0643|consen 202 RTYFITGSKDTT--------AKLVDVRTLEVLK--TYTTER-------PVNTAAISPLLDHVILGGGQEAM--------- 255 (327)
T ss_pred cceEEecccCcc--------ceeeeccceeeEE--Eeeecc-------cccceecccccceEEecCCceee---------
Confidence 998888887765 5788876543322 211122 56788999988888776544321
Q ss_pred CCCCCCcEEEEEcCCC-------------ceeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497 575 QFQPYGDLYVVKLDGS-------------GLRRLTWNGYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 575 ~~~~~~~l~~~~~~~~-------------~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
++-.-....+ +.-++-.+=+.+.+++|+|||+.+.+....|
T Consensus 256 ------dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG 309 (327)
T KOG0643|consen 256 ------DVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDG 309 (327)
T ss_pred ------eeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCc
Confidence 2222221112 2345555556678999999999988765554
No 122
>PTZ00420 coronin; Provisional
Probab=99.10 E-value=7.9e-08 Score=101.80 Aligned_cols=256 Identities=11% Similarity=0.037 Sum_probs=147.3
Q ss_pred ecCCcEEEEEEec-cCCceeeEEEEEe--------ecCCCCcccCCeecCC-CCEEEEEEeecCCCCCCcccceEeeccC
Q 039497 251 FHDGKRLAVATRR-KNRNFRHIEIYDL--------TLNPNFHHYNPFVSAN-SEFIGYHRFRGESTEGQSTIPHLEPVAS 320 (642)
Q Consensus 251 SpdG~~l~~~~~~-~~~~~~~i~~~d~--------~~~~~~~~~~~~~spD-g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 320 (642)
+..++++++...- .|+....+.+|+. ..++...+....|+|+ +..|+....++. ..+|-.....
T Consensus 35 a~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~Dgt------IrIWDi~t~~ 108 (568)
T PTZ00420 35 ACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLT------IRVWEIPHND 108 (568)
T ss_pred eeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCe------EEEEECCCCC
Confidence 4456666664432 3445556677764 2345666778899997 667776655444 3444332211
Q ss_pred C-Cc----ee-EEee--eCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEe-ecCCceeeeeecCCCEEEEEE
Q 039497 321 P-VK----EL-RMLR--LNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI-KDRTAFYNSWSPTEKHVIYTS 391 (642)
Q Consensus 321 ~-~~----~~-~~~~--~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~~~~~spdg~~l~~~~ 391 (642)
. .. .+ .+.. .......|+|++..++.... ....|.++|+.+++..... ....+..+.|+|||+.|+.++
T Consensus 109 ~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS--~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s 186 (568)
T PTZ00420 109 ESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG--FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTC 186 (568)
T ss_pred ccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe--CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEe
Confidence 1 00 01 1111 12246789999987765432 2367888898877643322 255688999999999887765
Q ss_pred cCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCc-----cCcEECCCCCeEEEEeCCC-CceeEEEE
Q 039497 392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN-----AFPSCSPDGKFLVFRSGRS-GHKNLFVL 465 (642)
Q Consensus 392 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~SpDg~~l~~~~~~~-g~~~l~~~ 465 (642)
. +..++||++.. +. ....+..+. +.. ....|++|+++|+.++... ...+|.+|
T Consensus 187 ~-------D~~IrIwD~Rs--------g~-----~i~tl~gH~-g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLW 245 (568)
T PTZ00420 187 V-------GKHMHIIDPRK--------QE-----IASSFHIHD-GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLW 245 (568)
T ss_pred c-------CCEEEEEECCC--------Cc-----EEEEEeccc-CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEE
Confidence 3 67899999865 22 334444443 221 1124569999988766432 23479999
Q ss_pred ECCC-CccccceeeCCCCC-CcccceeEecC-CCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccc
Q 039497 466 DAVN-GEFNGDIRQLTDGP-WIDTMPSWSPK-GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRE 542 (642)
Q Consensus 466 d~~~-g~~~~~~~~l~~~~-~~~~~~~~spd-G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 542 (642)
|+.. ++. +..+.-.. ...-.|.|.++ |.+++....+.. |++|++..+....+.......
T Consensus 246 Dlr~~~~p---l~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t--------Ir~~e~~~~~~~~l~~~~s~~------- 307 (568)
T PTZ00420 246 DLKNTTSA---LVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN--------CRYYQHSLGSIRKVNEYKSCS------- 307 (568)
T ss_pred ECCCCCCc---eEEEEecCCccceEEeeeCCCCCEEEEEECCCe--------EEEEEccCCcEEeecccccCC-------
Confidence 9884 332 33322111 12224566665 555544444443 889998777666665433222
Q ss_pred cccceEEcCCC
Q 039497 543 RINHVCFSADG 553 (642)
Q Consensus 543 ~~~~~~~S~Dg 553 (642)
....++|.|+-
T Consensus 308 p~~g~~f~Pkr 318 (568)
T PTZ00420 308 PFRSFGFLPKQ 318 (568)
T ss_pred CccceEEcccc
Confidence 34556777754
No 123
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.09 E-value=4.7e-08 Score=96.50 Aligned_cols=313 Identities=16% Similarity=0.076 Sum_probs=183.8
Q ss_pred CCCccccceeecCCcEEEEEEeccCCceeeEEEEEe------ecCCCCcccCCeecCCCCEEEEEEeecCCC-CCCcccc
Q 039497 241 PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL------TLNPNFHHYNPFVSANSEFIGYHRFRGEST-EGQSTIP 313 (642)
Q Consensus 241 ~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~-~~~~~~~ 313 (642)
....+...++||-|++|++.... .|.+|.- .......+....+||.+++|......+... .......
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~------~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA------GVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred cCcchhheeecCcchheehhhcc------ceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCc
Confidence 45566778899999998875433 3333333 112233455678999999988865433310 0000000
Q ss_pred ----eEeeccCCCceeEEeeeC-------CC-ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCcee
Q 039497 314 ----HLEPVASPVKELRMLRLN-------GS-FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFY 377 (642)
Q Consensus 314 ----~~~~~~~~~~~~~~~~~~-------~~-~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~ 377 (642)
.+...+.....+ +..+. +. ...||-|.++++.+. ...|+++++ ++...+... ..++..
T Consensus 105 ~~~n~~~vwd~~sg~i-v~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv----~~sl~i~e~-t~n~~~~p~~~lr~~gi~d 178 (561)
T COG5354 105 TSKNNVFVWDIASGMI-VFSFNGISQPYLGWPVLKFSIDDKYVARVV----GSSLYIHEI-TDNIEEHPFKNLRPVGILD 178 (561)
T ss_pred cccCceeEEeccCcee-EeeccccCCcccccceeeeeecchhhhhhc----cCeEEEEec-CCccccCchhhccccceee
Confidence 011111111111 11111 11 456788888777754 367888886 444333222 467888
Q ss_pred eeeecCC--CEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeC
Q 039497 378 NSWSPTE--KHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSG 455 (642)
Q Consensus 378 ~~~spdg--~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~ 455 (642)
+.|||-| ..|+|.... -......+.+|.+.. +. ....-+-.. .....+.|.+.|++|++...
T Consensus 179 FsisP~~n~~~la~~tPE--k~~kpa~~~i~sIp~--------~s-----~l~tk~lfk-~~~~qLkW~~~g~~ll~l~~ 242 (561)
T COG5354 179 FSISPEGNHDELAYWTPE--KLNKPAMVRILSIPK--------NS-----VLVTKNLFK-VSGVQLKWQVLGKYLLVLVM 242 (561)
T ss_pred EEecCCCCCceEEEEccc--cCCCCcEEEEEEccC--------CC-----eeeeeeeEe-ecccEEEEecCCceEEEEEE
Confidence 9999964 345555432 112355677888865 12 222212222 33456899999999988543
Q ss_pred CC--------CceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEE
Q 039497 456 RS--------GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR 527 (642)
Q Consensus 456 ~~--------g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 527 (642)
++ |..+||++++..... .......+.+..+.|.|+++.++..+.- ....+-.+|+.+. ++.
T Consensus 243 t~~ksnKsyfgesnLyl~~~~e~~i----~V~~~~~~pVhdf~W~p~S~~F~vi~g~------~pa~~s~~~lr~N-l~~ 311 (561)
T COG5354 243 THTKSNKSYFGESNLYLLRITERSI----PVEKDLKDPVHDFTWEPLSSRFAVISGY------MPASVSVFDLRGN-LRF 311 (561)
T ss_pred EeeecccceeccceEEEEeeccccc----ceeccccccceeeeecccCCceeEEecc------cccceeecccccc-eEE
Confidence 32 346899999884332 2222445678899999999999888743 3345888888775 544
Q ss_pred eeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeec-cCCCCCCCCcE
Q 039497 528 IHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL-TWNGYENGTPA 606 (642)
Q Consensus 528 l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l-t~~~~~~~~~~ 606 (642)
..+... -..+.|||.++++++..-+. ..+++-.++..+.- ..+ +..+....-..
T Consensus 312 ~~Pe~~----------rNT~~fsp~~r~il~agF~n--------------l~gni~i~~~~~rf-~~~~~~~~~n~s~~~ 366 (561)
T COG5354 312 YFPEQK----------RNTIFFSPHERYILFAGFDN--------------LQGNIEIFDPAGRF-KVAGAFNGLNTSYCD 366 (561)
T ss_pred ecCCcc----------cccccccCcccEEEEecCCc--------------cccceEEeccCCce-EEEEEeecCCceEee
Confidence 433222 24689999999999876554 24588888877643 333 33333444568
Q ss_pred EecCCceEEee
Q 039497 607 WHPGNQLDLGK 617 (642)
Q Consensus 607 ~s~dg~~~~~~ 617 (642)
|||||++|...
T Consensus 367 wspd~qF~~~~ 377 (561)
T COG5354 367 WSPDGQFYDTD 377 (561)
T ss_pred ccCCceEEEec
Confidence 99999999764
No 124
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=1.5e-08 Score=106.53 Aligned_cols=231 Identities=16% Similarity=0.138 Sum_probs=148.0
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCC--CeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGS--KRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
.+.|.|+|+.|+.... + +.|.+++.... ++..+. ........+.-++.+++.++. +..+.+|.+..
T Consensus 18 ~i~~d~~gefi~tcgs-d--g~ir~~~~~sd~e~P~ti~-~~g~~v~~ia~~s~~f~~~s~-------~~tv~~y~fps- 85 (933)
T KOG1274|consen 18 LICYDPDGEFICTCGS-D--GDIRKWKTNSDEEEPETID-ISGELVSSIACYSNHFLTGSE-------QNTVLRYKFPS- 85 (933)
T ss_pred EEEEcCCCCEEEEecC-C--CceEEeecCCcccCCchhh-ccCceeEEEeecccceEEeec-------cceEEEeeCCC-
Confidence 4589999996666543 3 44444443332 222222 122233444556666766653 67778887754
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeE
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~ 491 (642)
+. .-..|+... -....++++-+|+++++.+.+ ..|.+++..++.. .+.+..+...+..+.|
T Consensus 86 --------~~----~~~iL~Rft-lp~r~~~v~g~g~~iaagsdD---~~vK~~~~~D~s~---~~~lrgh~apVl~l~~ 146 (933)
T KOG1274|consen 86 --------GE----EDTILARFT-LPIRDLAVSGSGKMIAAGSDD---TAVKLLNLDDSSQ---EKVLRGHDAPVLQLSY 146 (933)
T ss_pred --------CC----ccceeeeee-ccceEEEEecCCcEEEeecCc---eeEEEEeccccch---heeecccCCceeeeeE
Confidence 21 222333333 456778999999999998854 4688888877654 5777778888899999
Q ss_pred ecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCC-CcccccccceEEcCCCCEEEEEEecCCcccCCC
Q 039497 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSG-DVDRERINHVCFSADGEWLLFTANLGAVMAEPV 570 (642)
Q Consensus 492 spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~ 570 (642)
+|.|+.|+..+-++. |++|++..+....... +..... ....+....++|+|+|..+++...++
T Consensus 147 ~p~~~fLAvss~dG~--------v~iw~~~~~~~~~tl~-~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~------- 210 (933)
T KOG1274|consen 147 DPKGNFLAVSSCDGK--------VQIWDLQDGILSKTLT-GVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN------- 210 (933)
T ss_pred cCCCCEEEEEecCce--------EEEEEcccchhhhhcc-cCCccccccccceeeeeeecCCCCeEEeeccCC-------
Confidence 999999999988775 9999998765432211 111100 01123567899999988888777665
Q ss_pred CCCCCCCCCCcEEEEEcCCCcee-eccCC--CCCCCCcEEecCCceEEeecCCC
Q 039497 571 SWPNQFQPYGDLYVVKLDGSGLR-RLTWN--GYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 571 ~~~~~~~~~~~l~~~~~~~~~~~-~lt~~--~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
.|-+|+..+.++. .|... ......+.|||.|+||+++.-.|
T Consensus 211 ----------~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g 254 (933)
T KOG1274|consen 211 ----------TVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDG 254 (933)
T ss_pred ----------eEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCC
Confidence 5667777776533 23322 12256789999999998864443
No 125
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.05 E-value=1.1e-06 Score=86.85 Aligned_cols=140 Identities=16% Similarity=0.251 Sum_probs=95.5
Q ss_pred CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeE
Q 039497 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSL 515 (642)
Q Consensus 436 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l 515 (642)
.....++..|+...++..+. +.++.+|+-..-+ -..+... ......|+|.| .|+.....+. .
T Consensus 369 delwgla~hps~~q~~T~gq---dk~v~lW~~~k~~----wt~~~~d--~~~~~~fhpsg-~va~Gt~~G~--------w 430 (626)
T KOG2106|consen 369 DELWGLATHPSKNQLLTCGQ---DKHVRLWNDHKLE----WTKIIED--PAECADFHPSG-VVAVGTATGR--------W 430 (626)
T ss_pred cceeeEEcCCChhheeeccC---cceEEEccCCcee----EEEEecC--ceeEeeccCcc-eEEEeeccce--------E
Confidence 46677888998877776552 3477777722111 1233332 34567999999 7777766553 7
Q ss_pred EEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeec
Q 039497 516 YVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL 595 (642)
Q Consensus 516 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 595 (642)
+++|.++.....+... .. +...+.|||||..|++.+.++-. .||.++.++....++
T Consensus 431 ~V~d~e~~~lv~~~~d--~~-------~ls~v~ysp~G~~lAvgs~d~~i---------------yiy~Vs~~g~~y~r~ 486 (626)
T KOG2106|consen 431 FVLDTETQDLVTIHTD--NE-------QLSVVRYSPDGAFLAVGSHDNHI---------------YIYRVSANGRKYSRV 486 (626)
T ss_pred EEEecccceeEEEEec--CC-------ceEEEEEcCCCCEEEEecCCCeE---------------EEEEECCCCcEEEEe
Confidence 8889887655555544 22 56889999999999999987633 566666666655555
Q ss_pred cCCC-CCCCCcEEecCCceEEee
Q 039497 596 TWNG-YENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 596 t~~~-~~~~~~~~s~dg~~~~~~ 617 (642)
-... ..+..+.||+|++++++.
T Consensus 487 ~k~~gs~ithLDwS~Ds~~~~~~ 509 (626)
T KOG2106|consen 487 GKCSGSPITHLDWSSDSQFLVSN 509 (626)
T ss_pred eeecCceeEEeeecCCCceEEec
Confidence 5432 456789999999999875
No 126
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.04 E-value=1.6e-06 Score=90.80 Aligned_cols=190 Identities=17% Similarity=0.111 Sum_probs=117.6
Q ss_pred CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc--ccCCCCccCcEECCCCCeE
Q 039497 373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT--KEETGNNAFPSCSPDGKFL 450 (642)
Q Consensus 373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~SpDg~~l 450 (642)
..+.++..|+-|++.+.... .+.+.++++.. |- ....+. ....+.+..++..-=++.+
T Consensus 449 ~~~~av~vs~CGNF~~IG~S-------~G~Id~fNmQS--------Gi-----~r~sf~~~~ah~~~V~gla~D~~n~~~ 508 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYS-------KGTIDRFNMQS--------GI-----HRKSFGDSPAHKGEVTGLAVDGTNRLL 508 (910)
T ss_pred cceEEEEEeccCceEEEecc-------CCeEEEEEccc--------Ce-----eecccccCccccCceeEEEecCCCceE
Confidence 34667788888887666542 67788888865 21 122221 1111445555554333445
Q ss_pred EEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497 451 VFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530 (642)
Q Consensus 451 ~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 530 (642)
+.+. .+| .|-.|+..++.. ...+.-. .....+.++-....++...++- .|.++|..+.+..+...
T Consensus 509 vsa~-~~G--ilkfw~f~~k~l---~~~l~l~-~~~~~iv~hr~s~l~a~~~ddf--------~I~vvD~~t~kvvR~f~ 573 (910)
T KOG1539|consen 509 VSAG-ADG--ILKFWDFKKKVL---KKSLRLG-SSITGIVYHRVSDLLAIALDDF--------SIRVVDVVTRKVVREFW 573 (910)
T ss_pred EEcc-Ccc--eEEEEecCCcce---eeeeccC-CCcceeeeeehhhhhhhhcCce--------eEEEEEchhhhhhHHhh
Confidence 4443 333 677888876553 2333322 2345566676666666665544 49999987655543322
Q ss_pred cCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecC
Q 039497 531 AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPG 610 (642)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~d 610 (642)
++.+ .++++.|||||+||+..+.+. .|..||+.++.+.-.-.-.....++.|||+
T Consensus 574 -gh~n-------ritd~~FS~DgrWlisasmD~-----------------tIr~wDlpt~~lID~~~vd~~~~sls~SPn 628 (910)
T KOG1539|consen 574 -GHGN-------RITDMTFSPDGRWLISASMDS-----------------TIRTWDLPTGTLIDGLLVDSPCTSLSFSPN 628 (910)
T ss_pred -cccc-------ceeeeEeCCCCcEEEEeecCC-----------------cEEEEeccCcceeeeEecCCcceeeEECCC
Confidence 4555 788999999999999998765 788889887764322222334578999999
Q ss_pred CceEEeecCCCc
Q 039497 611 NQLDLGKLRLED 622 (642)
Q Consensus 611 g~~~~~~~~~~~ 622 (642)
|.++++.+....
T Consensus 629 gD~LAT~Hvd~~ 640 (910)
T KOG1539|consen 629 GDFLATVHVDQN 640 (910)
T ss_pred CCEEEEEEecCc
Confidence 999988766543
No 127
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.03 E-value=1.3e-08 Score=93.91 Aligned_cols=273 Identities=12% Similarity=0.122 Sum_probs=175.2
Q ss_pred cceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEee--------------------------cCCCCcccCC
Q 039497 234 APTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT--------------------------LNPNFHHYNP 287 (642)
Q Consensus 234 ~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~--------------------------~~~~~~~~~~ 287 (642)
+..-++.+.......+|||||..++. |+....|.++|++ ..+...+...
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvAT-----GsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l 178 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVAT-----GSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDL 178 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEc-----cCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccce
Confidence 33456677767778899999998877 5666789999982 0123344556
Q ss_pred eecCCCCEEEEEEeecCCCCCCcccceEeeccCC-Cce-eEE--eeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC
Q 039497 288 FVSANSEFIGYHRFRGESTEGQSTIPHLEPVASP-VKE-LRM--LRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG 363 (642)
Q Consensus 288 ~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~ 363 (642)
.|.|..+.|+-.+.++.. .+.+.... .+. ... -......+.|+|.|.+|+... ....+.++|+++
T Consensus 179 ~FHPre~ILiS~srD~tv--------KlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT---dHp~~rlYdv~T 247 (430)
T KOG0640|consen 179 DFHPRETILISGSRDNTV--------KLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT---DHPTLRLYDVNT 247 (430)
T ss_pred eecchhheEEeccCCCeE--------EEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec---CCCceeEEeccc
Confidence 677777666554433321 11111111 000 000 011224678999999888754 357788888887
Q ss_pred CCeeEEee-----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC-CCC
Q 039497 364 SKRWTLIK-----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE-TGN 437 (642)
Q Consensus 364 ~~~~~l~~-----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 437 (642)
-+...-.. .+.+..+.+|+.|+..+..+. ++.++||+--. ++ .++.+.... ...
T Consensus 248 ~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSk-------DG~IklwDGVS--------~r-----Cv~t~~~AH~gse 307 (430)
T KOG0640|consen 248 YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASK-------DGAIKLWDGVS--------NR-----CVRTIGNAHGGSE 307 (430)
T ss_pred eeEeeecCcccccccceeEEEecCCccEEEEecc-------CCcEEeecccc--------HH-----HHHHHHhhcCCce
Confidence 66433222 456888999999985555553 78999998644 23 445554333 135
Q ss_pred ccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC--C---cccceeEecCCCEEEEEecCCCCCCCCc
Q 039497 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP--W---IDTMPSWSPKGDLIAFSSNRHNPDNVEA 512 (642)
Q Consensus 438 ~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~--~---~~~~~~~spdG~~l~~~~~~~~~~~~~~ 512 (642)
+....|+.|||+|+... .+..+++|.+.+|.. ++.-+... + --....|.....+++|-....
T Consensus 308 vcSa~Ftkn~kyiLsSG---~DS~vkLWEi~t~R~---l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas------- 374 (430)
T KOG0640|consen 308 VCSAVFTKNGKYILSSG---KDSTVKLWEISTGRM---LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEAS------- 374 (430)
T ss_pred eeeEEEccCCeEEeecC---CcceeeeeeecCCce---EEEEecCCcccchhhhhhhhhcCccceEEcccccc-------
Confidence 67789999999987554 345788999999985 44433211 1 123446777777777765543
Q ss_pred eeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497 513 FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL 562 (642)
Q Consensus 513 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~ 562 (642)
..++.||..++....+...++++ .+..+.-||.+--++..+.+
T Consensus 375 ~slcsWdaRtadr~~l~slgHn~-------a~R~i~HSP~~p~FmTcsdD 417 (430)
T KOG0640|consen 375 NSLCSWDARTADRVALLSLGHNG-------AVRWIVHSPVEPAFMTCSDD 417 (430)
T ss_pred CceeeccccchhhhhhcccCCCC-------CceEEEeCCCCCceeeeccc
Confidence 45999999888777777777777 56777889999877666654
No 128
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.03 E-value=3.1e-08 Score=103.64 Aligned_cols=196 Identities=16% Similarity=0.121 Sum_probs=120.1
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEe-ecCCceeeeeecC-CCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI-KDRTAFYNSWSPT-EKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
.+.||.++ +|+-.+. +.+ +.+|++...+.-.+. +...+..++|.|- .++++-.+. +.+++||.|..
T Consensus 374 DlSWSKn~-fLLSSSM-DKT--VRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSL-------D~KvRiWsI~d- 441 (712)
T KOG0283|consen 374 DLSWSKNN-FLLSSSM-DKT--VRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSL-------DGKVRLWSISD- 441 (712)
T ss_pred ecccccCC-eeEeccc-ccc--EEeecCCCcceeeEEecCCeeEEEEecccCCCcEeeccc-------ccceEEeecCc-
Confidence 56888766 3333332 444 444555555544443 3788999999994 555555443 89999999965
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccc-eeeCCC----CCCcc
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGD-IRQLTD----GPWID 486 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~-~~~l~~----~~~~~ 486 (642)
. ++..-..-. ..+..+.|+|||++.+..+.. | ....|++.+-+.... ...+.. ....+
T Consensus 442 -~------------~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~-G--~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rI 504 (712)
T KOG0283|consen 442 -K------------KVVDWNDLR-DLITAVCYSPDGKGAVIGTFN-G--YCRFYDTEGLKLVSDFHIRLHNKKKKQGKRI 504 (712)
T ss_pred -C------------eeEeehhhh-hhheeEEeccCCceEEEEEec-c--EEEEEEccCCeEEEeeeEeeccCccccCcee
Confidence 2 444445544 678889999999998887743 3 455566554332000 000110 01246
Q ss_pred cceeEecC-CCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCc
Q 039497 487 TMPSWSPK-GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV 565 (642)
Q Consensus 487 ~~~~~spd-G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~ 565 (642)
+.++|.|. -..|++++++.. |.++|+...++.+......+. ..-....|+.||++|+.++.+.
T Consensus 505 TG~Q~~p~~~~~vLVTSnDSr--------IRI~d~~~~~lv~KfKG~~n~------~SQ~~Asfs~Dgk~IVs~seDs-- 568 (712)
T KOG0283|consen 505 TGLQFFPGDPDEVLVTSNDSR--------IRIYDGRDKDLVHKFKGFRNT------SSQISASFSSDGKHIVSASEDS-- 568 (712)
T ss_pred eeeEecCCCCCeEEEecCCCc--------eEEEeccchhhhhhhcccccC------CcceeeeEccCCCEEEEeecCc--
Confidence 77777763 335777777654 999998655554333311111 0224678999999999999553
Q ss_pred ccCCCCCCCCCCCCCcEEEEEcCC
Q 039497 566 MAEPVSWPNQFQPYGDLYVVKLDG 589 (642)
Q Consensus 566 ~~~~~~~~~~~~~~~~l~~~~~~~ 589 (642)
.+|+|+.+.
T Consensus 569 ---------------~VYiW~~~~ 577 (712)
T KOG0283|consen 569 ---------------WVYIWKNDS 577 (712)
T ss_pred ---------------eEEEEeCCC
Confidence 788887643
No 129
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.00 E-value=2.9e-08 Score=93.80 Aligned_cols=221 Identities=15% Similarity=0.141 Sum_probs=148.7
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCC-e-eEE-eecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK-R-WTL-IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~-~-~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
.+.|+..|+.|+-.+.. -.+.++|.++.. . +.+ .....+..+.|-|-|.+|+-.++ +..+..|+++.
T Consensus 155 di~~~a~Gk~l~tcSsD---l~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~sr-------D~tik~We~~t 224 (406)
T KOG0295|consen 155 DISFDASGKYLATCSSD---LSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSR-------DNTIKAWECDT 224 (406)
T ss_pred EEEEecCccEEEecCCc---cchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeeccc-------ccceeEEeccc
Confidence 44778888887776542 225555655531 1 111 12567889999999999988875 67889999987
Q ss_pred ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccccee
Q 039497 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS 490 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~ 490 (642)
+- ....+..+. ..+..+..+.||..++..++ ...|.+|-+.+++- ...+..+...+..++
T Consensus 225 --------g~-----cv~t~~~h~-ewvr~v~v~~DGti~As~s~---dqtl~vW~~~t~~~---k~~lR~hEh~vEci~ 284 (406)
T KOG0295|consen 225 --------GY-----CVKTFPGHS-EWVRMVRVNQDGTIIASCSN---DQTLRVWVVATKQC---KAELREHEHPVECIA 284 (406)
T ss_pred --------ce-----eEEeccCch-HhEEEEEecCCeeEEEecCC---CceEEEEEeccchh---hhhhhccccceEEEE
Confidence 44 778888877 78888899999977665553 34777777777743 133444444444445
Q ss_pred EecC--------------C-CEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCE
Q 039497 491 WSPK--------------G-DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW 555 (642)
Q Consensus 491 ~spd--------------G-~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~ 555 (642)
|.|. | .++...+.+. .|.+||+.++.. .++..++.. .+..++|+|-|++
T Consensus 285 wap~~~~~~i~~at~~~~~~~~l~s~SrDk--------tIk~wdv~tg~c-L~tL~ghdn-------wVr~~af~p~Gky 348 (406)
T KOG0295|consen 285 WAPESSYPSISEATGSTNGGQVLGSGSRDK--------TIKIWDVSTGMC-LFTLVGHDN-------WVRGVAFSPGGKY 348 (406)
T ss_pred ecccccCcchhhccCCCCCccEEEeecccc--------eEEEEeccCCeE-EEEEecccc-------eeeeeEEcCCCeE
Confidence 5443 2 2333333333 389999988744 344446665 7889999999999
Q ss_pred EEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCceEEee
Q 039497 556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 556 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~~~~~~ 617 (642)
|+-.++++ .|.+||+..++ .+.+..+......+.|..+--++++.
T Consensus 349 i~ScaDDk-----------------tlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTG 394 (406)
T KOG0295|consen 349 ILSCADDK-----------------TLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTG 394 (406)
T ss_pred EEEEecCC-----------------cEEEEEeccceeeeccCCCcceeEEEecCCCCceEEec
Confidence 99888776 56666776654 66677777777888888777666553
No 130
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.00 E-value=1.4e-07 Score=96.53 Aligned_cols=120 Identities=13% Similarity=0.096 Sum_probs=77.1
Q ss_pred EEccccCCCCccCcEECCCCCeEEEEeCC--CCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCC
Q 039497 428 KILTKEETGNNAFPSCSPDGKFLVFRSGR--SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH 505 (642)
Q Consensus 428 ~~l~~~~~~~~~~~~~SpDg~~l~~~~~~--~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~ 505 (642)
.+|-.+. ..+..++.||+|+.|+.+-.. .....|++|+..+-.. ...|..+...+..++|||||++|+..+.+.
T Consensus 519 ~KLYGHG-yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~---~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR 594 (764)
T KOG1063|consen 519 HKLYGHG-YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ---VQELEGHSLTVTRLAFSPDGRYLLSVSRDR 594 (764)
T ss_pred HHhccCc-eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh---hheecccceEEEEEEECCCCcEEEEeecCc
Confidence 3344444 567788999999987754321 2345899999876554 456888888899999999999999888775
Q ss_pred CCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 506 NPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 506 ~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
. +.+|.......-.+.... .....+.+.+..|+||+++++..+.+.
T Consensus 595 t--------~sl~~~~~~~~~e~~fa~----~k~HtRIIWdcsW~pde~~FaTaSRDK 640 (764)
T KOG1063|consen 595 T--------VSLYEVQEDIKDEFRFAC----LKAHTRIIWDCSWSPDEKYFATASRDK 640 (764)
T ss_pred e--------EEeeeeecccchhhhhcc----ccccceEEEEcccCcccceeEEecCCc
Confidence 3 444443211110000000 011123567889999999977666654
No 131
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=4.6e-08 Score=92.44 Aligned_cols=233 Identities=21% Similarity=0.277 Sum_probs=143.8
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCC-CEEEEEEcCCCcccCCCeEEEEEEE
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTE-KHVIYTSTGPIFQSERATVQIARVS 409 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~l~~~~ 409 (642)
+..+|++ ..++|+.. .....|.+++........+.. ...+..++|-|.+ +.|++.. ...+.||..+
T Consensus 102 r~~aWhq--H~~~fava-~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgC--------r~gIciW~~s 170 (445)
T KOG2139|consen 102 RGVAWHQ--HIIAFAVA-TNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGC--------RAGICIWSDS 170 (445)
T ss_pred eeEeech--hhhhhhhh-ccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeee--------cceeEEEEcC
Confidence 4567776 33444332 345677788877766666665 5678899999975 4556665 6788999886
Q ss_pred eecCCCCC-CCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-CCCCccc
Q 039497 410 FQLDPSDD-NNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDT 487 (642)
Q Consensus 410 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~~~ 487 (642)
...+.... ..+... ..+.+.......+..+.|.+||..++.++. +...|.+||+++|.. ..|. ...+...
T Consensus 171 ~tln~~r~~~~~s~~--~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~--gsssi~iWdpdtg~~----~pL~~~glgg~s 242 (445)
T KOG2139|consen 171 RTLNANRNIRMMSTH--HLQVLQDPGHNPVTSMQWNEDGTILVTASF--GSSSIMIWDPDTGQK----IPLIPKGLGGFS 242 (445)
T ss_pred ccccccccccccccc--chhheeCCCCceeeEEEEcCCCCEEeeccc--CcceEEEEcCCCCCc----ccccccCCCcee
Confidence 51110000 000100 111111111135778899999999988776 556899999999885 5555 5556677
Q ss_pred ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC--ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCc
Q 039497 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS--GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV 565 (642)
Q Consensus 488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~ 565 (642)
...|||||.+|+.+.-+.. ..+|..... +++-++. .+ ++....|||+|++|+|+.....
T Consensus 243 lLkwSPdgd~lfaAt~dav--------frlw~e~q~wt~erw~lg---sg-------rvqtacWspcGsfLLf~~sgsp- 303 (445)
T KOG2139|consen 243 LLKWSPDGDVLFAATCDAV--------FRLWQENQSWTKERWILG---SG-------RVQTACWSPCGSFLLFACSGSP- 303 (445)
T ss_pred eEEEcCCCCEEEEecccce--------eeeehhcccceecceecc---CC-------ceeeeeecCCCCEEEEEEcCCc-
Confidence 8899999998877766542 344433221 1222221 22 5677899999999999876532
Q ss_pred ccCCCCCCCCCCCCCcEEEEEcCCCcee----------ec-------c--CC----CCCCCCcEEecCCceEEeec
Q 039497 566 MAEPVSWPNQFQPYGDLYVVKLDGSGLR----------RL-------T--WN----GYENGTPAWHPGNQLDLGKL 618 (642)
Q Consensus 566 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~l-------t--~~----~~~~~~~~~s~dg~~~~~~~ 618 (642)
.||....++.... .+ + .. .+....++|.|.|.+++..-
T Consensus 304 ---------------~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 304 ---------------RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred ---------------eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 6776665442211 01 1 11 34567899999999986543
No 132
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.98 E-value=3.1e-08 Score=91.54 Aligned_cols=284 Identities=15% Similarity=0.136 Sum_probs=174.8
Q ss_pred ceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecC----CCceeEe--------------ecC
Q 039497 131 KFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESD----PNKRVIV--------------CER 192 (642)
Q Consensus 131 ~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~l~--------------~~~ 192 (642)
+...|+.+...-..++|||||..+|..+.+. .|-+++++. .+.+++. ..+
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~------------SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH 171 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADA------------SIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDH 171 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcc------------eEEEeehhhhhhhcchhhhccCCcccCCceEeehhhc
Confidence 4566777776667789999999999877555 566666540 0111111 111
Q ss_pred C---CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCcee
Q 039497 193 G---GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFR 269 (642)
Q Consensus 193 ~---~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~ 269 (642)
. ..+.|.|-..|+++. ..+++..+|.+...+-+ +..++...-..+..+.|.|.|.+|++.. ...
T Consensus 172 ~devn~l~FHPre~ILiS~-srD~tvKlFDfsK~saK-------rA~K~~qd~~~vrsiSfHPsGefllvgT-----dHp 238 (430)
T KOG0640|consen 172 VDEVNDLDFHPRETILISG-SRDNTVKLFDFSKTSAK-------RAFKVFQDTEPVRSISFHPSGEFLLVGT-----DHP 238 (430)
T ss_pred cCcccceeecchhheEEec-cCCCeEEEEecccHHHH-------HHHHHhhccceeeeEeecCCCceEEEec-----CCC
Confidence 1 346899998999888 67888888877544332 2233344444677889999999999944 445
Q ss_pred eEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEec
Q 039497 270 HIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHD 349 (642)
Q Consensus 270 ~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 349 (642)
.+++||+.+.. .|+....+. ..........+|+.|+..+..+.
T Consensus 239 ~~rlYdv~T~Q----------------cfvsanPd~---------------------qht~ai~~V~Ys~t~~lYvTaSk 281 (430)
T KOG0640|consen 239 TLRLYDVNTYQ----------------CFVSANPDD---------------------QHTGAITQVRYSSTGSLYVTASK 281 (430)
T ss_pred ceeEEecccee----------------EeeecCccc---------------------ccccceeEEEecCCccEEEEecc
Confidence 89999984321 222221110 00111234578999984444332
Q ss_pred CCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCcccc
Q 039497 350 FELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPC 425 (642)
Q Consensus 350 ~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 425 (642)
+ +.|.++|--+++...... ...+.+..|+.||++|+... .+..+++|.+.+ ++
T Consensus 282 -D--G~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG-------~DS~vkLWEi~t--------~R----- 338 (430)
T KOG0640|consen 282 -D--GAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG-------KDSTVKLWEIST--------GR----- 338 (430)
T ss_pred -C--CcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC-------CcceeeeeeecC--------Cc-----
Confidence 3 556666644444322221 44578899999999887664 378899999987 44
Q ss_pred ceEEccccC----CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-CCCCcccceeEecCCCEEEE
Q 039497 426 DVKILTKEE----TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMPSWSPKGDLIAF 500 (642)
Q Consensus 426 ~~~~l~~~~----~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~~~~~~~spdG~~l~~ 500 (642)
..+..+... ...-....|.....+++|-..+. ..+.-||..++.. ...+. .+.+.+..+.-||.+--+..
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas--~slcsWdaRtadr---~~l~slgHn~a~R~i~HSP~~p~FmT 413 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEAS--NSLCSWDARTADR---VALLSLGHNGAVRWIVHSPVEPAFMT 413 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEcccccc--Cceeeccccchhh---hhhcccCCCCCceEEEeCCCCCceee
Confidence 444444321 01233456777778888776544 4799999988875 23332 34445566677888876665
Q ss_pred EecC
Q 039497 501 SSNR 504 (642)
Q Consensus 501 ~~~~ 504 (642)
.+.+
T Consensus 414 csdD 417 (430)
T KOG0640|consen 414 CSDD 417 (430)
T ss_pred eccc
Confidence 5554
No 133
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.98 E-value=3.9e-08 Score=96.48 Aligned_cols=228 Identities=14% Similarity=0.078 Sum_probs=153.4
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCe-eEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR-WTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~-~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
....|-.||+.++.. +..+.+.++|.++... +.+.. ...+....|+|+++.++... .++...++|+++.
T Consensus 72 ~s~~fR~DG~LlaaG---D~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~------sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 72 YSVDFRSDGRLLAAG---DESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSG------SDDKVVKYWDLST 142 (487)
T ss_pred eEEEeecCCeEEEcc---CCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEec------CCCceEEEEEcCC
Confidence 345788999866553 3346677778544222 12211 55677889999988887766 3577888899865
Q ss_pred ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccccee
Q 039497 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS 490 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~ 490 (642)
. - ....+..++ ..+...+|+|-...|+++..-+| .|.+||+.+... .+..+ ++...+..+.
T Consensus 143 --a------~-----v~~~l~~ht-DYVR~g~~~~~~~hivvtGsYDg--~vrl~DtR~~~~--~v~el-nhg~pVe~vl 203 (487)
T KOG0310|consen 143 --A------Y-----VQAELSGHT-DYVRCGDISPANDHIVVTGSYDG--KVRLWDTRSLTS--RVVEL-NHGCPVESVL 203 (487)
T ss_pred --c------E-----EEEEecCCc-ceeEeeccccCCCeEEEecCCCc--eEEEEEeccCCc--eeEEe-cCCCceeeEE
Confidence 1 1 333566666 78889999999999999887655 677777765422 02333 3445677888
Q ss_pred EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCC
Q 039497 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV 570 (642)
Q Consensus 491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~ 570 (642)
+-|.|..|+.++.+. +.+||+.+|.........+.. .++.+.+..|+++|+..+-++
T Consensus 204 ~lpsgs~iasAgGn~---------vkVWDl~~G~qll~~~~~H~K-------tVTcL~l~s~~~rLlS~sLD~------- 260 (487)
T KOG0310|consen 204 ALPSGSLIASAGGNS---------VKVWDLTTGGQLLTSMFNHNK-------TVTCLRLASDSTRLLSGSLDR------- 260 (487)
T ss_pred EcCCCCEEEEcCCCe---------EEEEEecCCceehhhhhcccc-------eEEEEEeecCCceEeeccccc-------
Confidence 999999888776554 999999866544332223444 578899999999999888775
Q ss_pred CCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497 571 SWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 571 ~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
++-+++...-+...=-...+.+.+++.|||++.++.....|
T Consensus 261 ----------~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 261 ----------HVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred ----------ceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccc
Confidence 55566644433322222456678999999998887655444
No 134
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.96 E-value=5.1e-08 Score=92.21 Aligned_cols=258 Identities=14% Similarity=0.096 Sum_probs=161.1
Q ss_pred ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEE
Q 039497 196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD 275 (642)
Q Consensus 196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d 275 (642)
.-+.|+-.+++++ .+++ .|..+|..+++ ....+.++...+..++|+..|++|+.+..+. .+.+||
T Consensus 114 v~~hp~~~~v~~a-s~d~--tikv~D~~tg~-------~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl-----~~~LWd 178 (406)
T KOG0295|consen 114 VIFHPSEALVVSA-SEDA--TIKVFDTETGE-------LERSLRGHTDSVFDISFDASGKYLATCSSDL-----SAKLWD 178 (406)
T ss_pred eeeccCceEEEEe-cCCc--eEEEEEccchh-------hhhhhhccccceeEEEEecCccEEEecCCcc-----chhhee
Confidence 3456776677766 3455 66667777773 4445566655688899999999999865543 588999
Q ss_pred e---------ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEE
Q 039497 276 L---------TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVF 346 (642)
Q Consensus 276 ~---------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 346 (642)
+ ..++.-.++.+.+-|-|.+|+-...+.. ...|.........++...+.-...++.+.||..++-
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~t------ik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As 252 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNT------IKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIAS 252 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccc------eeEEecccceeEEeccCchHhEEEEEecCCeeEEEe
Confidence 8 3456666788899999988877754443 223332221111111100001134466888876655
Q ss_pred EecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecC--------------CCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 347 NHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPT--------------EKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 347 ~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spd--------------g~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
.+ ....|.++-+.+++...+.. ...+..++|.|. +..+.... ..+..+++|++.+
T Consensus 253 ~s---~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~------SrDktIk~wdv~t 323 (406)
T KOG0295|consen 253 CS---NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSG------SRDKTIKIWDVST 323 (406)
T ss_pred cC---CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEee------cccceEEEEeccC
Confidence 43 33455555555553222221 233444444432 22333332 2378999999987
Q ss_pred ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccccee
Q 039497 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS 490 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~ 490 (642)
+. ..-.|..+. ..+..++|+|.|+||+-.++ +..|.+||+++++- ++.+..++.-+....
T Consensus 324 --------g~-----cL~tL~ghd-nwVr~~af~p~Gkyi~ScaD---Dktlrvwdl~~~~c---mk~~~ah~hfvt~lD 383 (406)
T KOG0295|consen 324 --------GM-----CLFTLVGHD-NWVRGVAFSPGGKYILSCAD---DKTLRVWDLKNLQC---MKTLEAHEHFVTSLD 383 (406)
T ss_pred --------Ce-----EEEEEeccc-ceeeeeEEcCCCeEEEEEec---CCcEEEEEecccee---eeccCCCcceeEEEe
Confidence 44 666677776 78999999999999988774 34799999998886 677777777777778
Q ss_pred EecCCCEEEEEec
Q 039497 491 WSPKGDLIAFSSN 503 (642)
Q Consensus 491 ~spdG~~l~~~~~ 503 (642)
|..+--+++..+-
T Consensus 384 fh~~~p~VvTGsV 396 (406)
T KOG0295|consen 384 FHKTAPYVVTGSV 396 (406)
T ss_pred cCCCCceEEeccc
Confidence 8776655544443
No 135
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=3.9e-08 Score=88.57 Aligned_cols=236 Identities=12% Similarity=0.105 Sum_probs=159.2
Q ss_pred eCCCccEEcCC-CCEEEEEec----CCCceeEEEEECC-CCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCC
Q 039497 330 LNGSFPSFSPD-GGLIVFNHD----FELNAGIKIAKSD-GSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSER 400 (642)
Q Consensus 330 ~~~~~~~~spd-g~~l~~~~~----~~~~~~l~~~d~~-~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 400 (642)
+.+....|||= .++|+.... -.+.+.|++.+++ .+..+.... ......++|+++-..++++.. ++
T Consensus 9 f~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~------GD 82 (311)
T KOG0277|consen 9 FHGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAAS------GD 82 (311)
T ss_pred cccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEe------cC
Confidence 34455677772 345665432 2467899999996 333333333 677899999999877777773 58
Q ss_pred CeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC
Q 039497 401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT 480 (642)
Q Consensus 401 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~ 480 (642)
+.++||+... . .+ .+..+..+. ..+..+.|++-.++.+.++.-++ .|.+|+..-++. +....
T Consensus 83 GSLrl~d~~~--~-----s~-----Pi~~~kEH~-~EV~Svdwn~~~r~~~ltsSWD~--TiKLW~~~r~~S---v~Tf~ 144 (311)
T KOG0277|consen 83 GSLRLFDLTM--P-----SK-----PIHKFKEHK-REVYSVDWNTVRRRIFLTSSWDG--TIKLWDPNRPNS---VQTFN 144 (311)
T ss_pred ceEEEeccCC--C-----Cc-----chhHHHhhh-hheEEeccccccceeEEeeccCC--ceEeecCCCCcc---eEeec
Confidence 9999999654 1 22 444445555 77888899998778777776555 566677665554 67777
Q ss_pred CCCCcccceeEec-CCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEE
Q 039497 481 DGPWIDTMPSWSP-KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559 (642)
Q Consensus 481 ~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~ 559 (642)
.+...+...+||| ..+.++..+.+.. +.+||++......... .+.. .+....|+.-...++++
T Consensus 145 gh~~~Iy~a~~sp~~~nlfas~Sgd~~--------l~lwdvr~~gk~~~i~-ah~~-------Eil~cdw~ky~~~vl~T 208 (311)
T KOG0277|consen 145 GHNSCIYQAAFSPHIPNLFASASGDGT--------LRLWDVRSPGKFMSIE-AHNS-------EILCCDWSKYNHNVLAT 208 (311)
T ss_pred CCccEEEEEecCCCCCCeEEEccCCce--------EEEEEecCCCceeEEE-eccc-------eeEeecccccCCcEEEe
Confidence 7767778889999 5666777766654 7778876543333322 2222 45677899988888888
Q ss_pred EecCCcccCCCCCCCCCCCCCcEEEEEcCCCc--eeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG--LRRLTWNGYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
....+ -|+.||+..-. +..|..++..++.+.|||-..-++++.+..
T Consensus 209 g~vd~----------------~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD 256 (311)
T KOG0277|consen 209 GGVDN----------------LVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYD 256 (311)
T ss_pred cCCCc----------------eEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhcccc
Confidence 75543 67788876532 556777778889999999886666655544
No 136
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.94 E-value=2.1e-07 Score=90.04 Aligned_cols=222 Identities=18% Similarity=0.244 Sum_probs=136.9
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeee-cCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWS-PTEKHVIYTSTGPIFQSERATVQIARVSFQL 412 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (642)
.|.|.+....|+++.. ....|+.++.+++....+.... ...+.+. ++ ..|+++. .....++ +.
T Consensus 4 gp~~d~~~g~l~~~D~--~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~-g~l~v~~--------~~~~~~~--d~-- 67 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDI--PGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPD-GRLYVAD--------SGGIAVV--DP-- 67 (246)
T ss_dssp EEEEETTTTEEEEEET--TTTEEEEEETTTTEEEEEESSS-EEEEEEECTT-SEEEEEE--------TTCEEEE--ET--
T ss_pred ceEEECCCCEEEEEEc--CCCEEEEEECCCCeEEEEecCC-CceEEEEccC-CEEEEEE--------cCceEEE--ec--
Confidence 5689986666877763 3578999999998765544433 6667777 55 5566666 2344444 33
Q ss_pred CCCCCCCCCccccceEEcccc-----CCCCccCcEECCCCCeEEEEeCCCC----c--eeEEEEECCCCccccceeeCCC
Q 039497 413 DPSDDNNREEIPCDVKILTKE-----ETGNNAFPSCSPDGKFLVFRSGRSG----H--KNLFVLDAVNGEFNGDIRQLTD 481 (642)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~SpDg~~l~~~~~~~g----~--~~l~~~d~~~g~~~~~~~~l~~ 481 (642)
+ ++ +.+.+... .......+++.|||+ |+++..... . ..||+++.+ ++. ..+..
T Consensus 68 ~-----~g-----~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~----~~~~~ 131 (246)
T PF08450_consen 68 D-----TG-----KVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKV----TVVAD 131 (246)
T ss_dssp T-----TT-----EEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEE----EEEEE
T ss_pred C-----CC-----cEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeE----EEEec
Confidence 1 22 33333332 113456689999998 666654321 1 579999998 663 55544
Q ss_pred CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc--e---EEeeec-CCCCCCCcccccccceEEcCCCCE
Q 039497 482 GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG--L---RRIHVA-GPEGSGDVDRERINHVCFSADGEW 555 (642)
Q Consensus 482 ~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~--~---~~l~~~-~~~~~~~~~~~~~~~~~~S~Dg~~ 555 (642)
.-...+.++|+|||+.|++...... .|+.++++... . +.+... ...+ .+..+++..+|+
T Consensus 132 ~~~~pNGi~~s~dg~~lyv~ds~~~-------~i~~~~~~~~~~~~~~~~~~~~~~~~~g-------~pDG~~vD~~G~- 196 (246)
T PF08450_consen 132 GLGFPNGIAFSPDGKTLYVADSFNG-------RIWRFDLDADGGELSNRRVFIDFPGGPG-------YPDGLAVDSDGN- 196 (246)
T ss_dssp EESSEEEEEEETTSSEEEEEETTTT-------EEEEEEEETTTCCEEEEEEEEE-SSSSC-------EEEEEEEBTTS--
T ss_pred CcccccceEECCcchheeecccccc-------eeEEEeccccccceeeeeeEEEcCCCCc-------CCCcceEcCCCC-
Confidence 4345577899999999988876553 49999886322 2 222221 1111 356789999997
Q ss_pred EEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEe-cC-CceEEeec
Q 039497 556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWH-PG-NQLDLGKL 618 (642)
Q Consensus 556 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s-~d-g~~~~~~~ 618 (642)
|+++.... ..|++++.+|..+..+........+++|. +| ..+|++..
T Consensus 197 l~va~~~~----------------~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 197 LWVADWGG----------------GRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEEEEETT----------------TEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred EEEEEcCC----------------CEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 54444332 28999999976666666553466789995 55 36667653
No 137
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.93 E-value=1.1e-07 Score=101.77 Aligned_cols=170 Identities=12% Similarity=0.023 Sum_probs=114.7
Q ss_pred CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEE
Q 039497 373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452 (642)
Q Consensus 373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~ 452 (642)
..+..+.+||||++++|+..... ...+....||..+. ++ ..+.++... ....|.|||||++|+|
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~-~~~d~~s~Lwv~~~--------gg-----~~~~lt~g~--~~t~PsWspDG~~lw~ 413 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGR-GAPDPASSLWVGPL--------GG-----VAVQVLEGH--SLTRPSWSLDADAVWV 413 (591)
T ss_pred cCcccceECCCCCEEEEEEeecC-CCCCcceEEEEEeC--------CC-----cceeeecCC--CCCCceECCCCCceEE
Confidence 35678999999999999984221 12245567888766 34 446666654 4788999999998888
Q ss_pred EeCC---------CCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEE---EeC
Q 039497 453 RSGR---------SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYV---IKP 520 (642)
Q Consensus 453 ~~~~---------~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~---~d~ 520 (642)
.++. .+..+||++++++|+. .+ .....+..+.|||||++|+|.... +||+ ...
T Consensus 414 v~dg~~~~~v~~~~~~gql~~~~vd~ge~----~~--~~~g~Issl~wSpDG~RiA~i~~g---------~v~Va~Vvr~ 478 (591)
T PRK13616 414 VVDGNTVVRVIRDPATGQLARTPVDASAV----AS--RVPGPISELQLSRDGVRAAMIIGG---------KVYLAVVEQT 478 (591)
T ss_pred EecCcceEEEeccCCCceEEEEeccCchh----hh--ccCCCcCeEEECCCCCEEEEEECC---------EEEEEEEEeC
Confidence 8643 2456888888887764 43 334558899999999999998842 3777 554
Q ss_pred CCCceEEeee-----cCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeec
Q 039497 521 DGSGLRRIHV-----AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL 595 (642)
Q Consensus 521 ~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 595 (642)
.+|. ..++. ..... .+.++.|..|++ |+......+ ..+|.++++|...+.+
T Consensus 479 ~~G~-~~l~~~~~l~~~l~~-------~~~~l~W~~~~~-L~V~~~~~~---------------~~v~~v~vDG~~~~~~ 534 (591)
T PRK13616 479 EDGQ-YALTNPREVGPGLGD-------TAVSLDWRTGDS-LVVGRSDPE---------------HPVWYVNLDGSNSDAL 534 (591)
T ss_pred CCCc-eeecccEEeecccCC-------ccccceEecCCE-EEEEecCCC---------------CceEEEecCCcccccc
Confidence 5555 33321 12222 246789999998 444443322 2799999998876654
Q ss_pred cC
Q 039497 596 TW 597 (642)
Q Consensus 596 t~ 597 (642)
..
T Consensus 535 ~~ 536 (591)
T PRK13616 535 PS 536 (591)
T ss_pred CC
Confidence 44
No 138
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.92 E-value=6e-08 Score=95.27 Aligned_cols=266 Identities=15% Similarity=0.111 Sum_probs=167.5
Q ss_pred eEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceee--CCCCCccccceeecCCcEEEEEEeccCCceeeEEEE
Q 039497 197 TWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRV--TPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIY 274 (642)
Q Consensus 197 ~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~ 274 (642)
+.|...+.+|+. ..|...||.+.-.+.+. .+.+| ...+..+...-++|||+.|++ |+....+.+|
T Consensus 426 tIS~~trhVyTg--GkgcVKVWdis~pg~k~------PvsqLdcl~rdnyiRSckL~pdgrtLiv-----GGeastlsiW 492 (705)
T KOG0639|consen 426 TISNPTRHVYTG--GKGCVKVWDISQPGNKS------PVSQLDCLNRDNYIRSCKLLPDGRTLIV-----GGEASTLSIW 492 (705)
T ss_pred EecCCcceeEec--CCCeEEEeeccCCCCCC------ccccccccCcccceeeeEecCCCceEEe-----ccccceeeee
Confidence 566666666665 24656777765443321 11222 233455666778999999998 5557789999
Q ss_pred EeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCce
Q 039497 275 DLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA 354 (642)
Q Consensus 275 d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 354 (642)
||.... ..++. +++-.......++.|||.+ ++|..-. .+
T Consensus 493 DLAapT-----------------------------------prika---eltssapaCyALa~spDak-vcFsccs--dG 531 (705)
T KOG0639|consen 493 DLAAPT-----------------------------------PRIKA---ELTSSAPACYALAISPDAK-VCFSCCS--DG 531 (705)
T ss_pred eccCCC-----------------------------------cchhh---hcCCcchhhhhhhcCCccc-eeeeecc--CC
Confidence 982211 00000 0000111224568899997 7775532 36
Q ss_pred eEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc
Q 039497 355 GIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK 432 (642)
Q Consensus 355 ~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 432 (642)
+|.+||+.....++-.. ..+...+.+|+||.+|+.... ++.++.|++.. ++ ...+-.
T Consensus 532 nI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGl-------DntvRcWDlre--------gr-----qlqqhd- 590 (705)
T KOG0639|consen 532 NIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGL-------DNTVRCWDLRE--------GR-----QLQQHD- 590 (705)
T ss_pred cEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCC-------ccceeehhhhh--------hh-----hhhhhh-
Confidence 78888887665444333 567889999999999987653 78899999865 22 222111
Q ss_pred cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCc
Q 039497 433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA 512 (642)
Q Consensus 433 ~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~ 512 (642)
.. ..+..+..+|.|.||++.-. ..+++++.....+. .+|..+..-+-++.|++-|+|++-+..++-
T Consensus 591 F~-SQIfSLg~cP~~dWlavGMe---ns~vevlh~skp~k----yqlhlheScVLSlKFa~cGkwfvStGkDnl------ 656 (705)
T KOG0639|consen 591 FS-SQIFSLGYCPTGDWLAVGME---NSNVEVLHTSKPEK----YQLHLHESCVLSLKFAYCGKWFVSTGKDNL------ 656 (705)
T ss_pred hh-hhheecccCCCccceeeecc---cCcEEEEecCCccc----eeecccccEEEEEEecccCceeeecCchhh------
Confidence 11 35667888999999998653 34788888775553 888887777888999999999887776642
Q ss_pred eeEEEEeCC-CCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 513 FSLYVIKPD-GSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 513 ~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
|-.|..- +..+-+.. ... .+....+|.|.++|+..+.+.
T Consensus 657 --LnawrtPyGasiFqsk---E~S-------sVlsCDIS~ddkyIVTGSGdk 696 (705)
T KOG0639|consen 657 --LNAWRTPYGASIFQSK---ESS-------SVLSCDISFDDKYIVTGSGDK 696 (705)
T ss_pred --hhhccCccccceeecc---ccC-------cceeeeeccCceEEEecCCCc
Confidence 3333322 22222221 122 456677899999998887664
No 139
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=5.2e-07 Score=83.90 Aligned_cols=267 Identities=13% Similarity=0.106 Sum_probs=155.5
Q ss_pred CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEE
Q 039497 194 GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI 273 (642)
Q Consensus 194 ~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~ 273 (642)
....|++-|.++++. ..+|..-|| |..+-. ....+..+-..+.+++||+||++|+.++++. .+.+
T Consensus 27 ~~~~Fs~~G~~lAvG-c~nG~vvI~--D~~T~~-------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~-----si~l 91 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVG-CANGRVVIY--DFDTFR-------IARMLSAHVRPITSLCWSRDGRKLLTSSRDW-----SIKL 91 (405)
T ss_pred ceEEeccCcceeeee-ccCCcEEEE--Eccccc-------hhhhhhccccceeEEEecCCCCEeeeecCCc-----eeEE
Confidence 356999999999988 567855555 444431 3345566666788899999999999976655 8999
Q ss_pred EEeecCC-------CCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEe------eeCCCccEEcCC
Q 039497 274 YDLTLNP-------NFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRML------RLNGSFPSFSPD 340 (642)
Q Consensus 274 ~d~~~~~-------~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~spd 340 (642)
||+..+. ...+....|.|-.+..+....-... ..+..+..+...+... ........|.+-
T Consensus 92 wDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~s-------p~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~ 164 (405)
T KOG1273|consen 92 WDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEES-------PVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRR 164 (405)
T ss_pred EeccCCCceeEEEccCccceeeeccccCCeEEEEEecCC-------cEEEEecCCceeeccCCCccccccccccccccCC
Confidence 9994332 2233344556644443333221111 1222222221111111 011123357888
Q ss_pred CCEEEEEecCCCceeEEEEECCCCCeeEE---eecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCC
Q 039497 341 GGLIVFNHDFELNAGIKIAKSDGSKRWTL---IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDD 417 (642)
Q Consensus 341 g~~l~~~~~~~~~~~l~~~d~~~~~~~~l---~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 417 (642)
|++|+.. ..++.|.+++.++-+.+.- +....+.++.++-.|+.|++-+. +..++.|.+..- +. ..
T Consensus 165 g~yIitG---tsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts-------DRvIR~ye~~di-~~-~~ 232 (405)
T KOG1273|consen 165 GKYIITG---TSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS-------DRVIRTYEISDI-DD-EG 232 (405)
T ss_pred CCEEEEe---cCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC-------CceEEEEehhhh-cc-cC
Confidence 9877663 4568899999888765432 22356778899999998887653 567777776410 10 00
Q ss_pred CCCCc-cccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC-cccceeEecCC
Q 039497 418 NNREE-IPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW-IDTMPSWSPKG 495 (642)
Q Consensus 418 ~~~~~-~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~-~~~~~~~spdG 495 (642)
.+++. ...+.+.+.... .-...-||.||.||+..+. ..-.||+|....|.. ++.|....+ ....+.|.|=-
T Consensus 233 r~~e~e~~~K~qDvVNk~--~Wk~ccfs~dgeYv~a~s~--~aHaLYIWE~~~GsL---VKILhG~kgE~l~DV~whp~r 305 (405)
T KOG1273|consen 233 RDGEVEPEHKLQDVVNKL--QWKKCCFSGDGEYVCAGSA--RAHALYIWEKSIGSL---VKILHGTKGEELLDVNWHPVR 305 (405)
T ss_pred ccCCcChhHHHHHHHhhh--hhhheeecCCccEEEeccc--cceeEEEEecCCcce---eeeecCCchhheeecccccce
Confidence 11200 000111111111 2234688999999987763 335899999999997 555554442 33456788876
Q ss_pred CEEEEE
Q 039497 496 DLIAFS 501 (642)
Q Consensus 496 ~~l~~~ 501 (642)
-.|+-.
T Consensus 306 p~i~si 311 (405)
T KOG1273|consen 306 PIIASI 311 (405)
T ss_pred eeeeec
Confidence 555544
No 140
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=1e-06 Score=83.56 Aligned_cols=171 Identities=16% Similarity=0.202 Sum_probs=108.6
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
..+.|.+||..++-.+ -+...|.++|.+++...++.. .+++.-+.|||||.+|+.++- +...++|....
T Consensus 199 tsmqwn~dgt~l~tAS--~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~-------davfrlw~e~q 269 (445)
T KOG2139|consen 199 TSMQWNEDGTILVTAS--FGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC-------DAVFRLWQENQ 269 (445)
T ss_pred eEEEEcCCCCEEeecc--cCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc-------cceeeeehhcc
Confidence 3568999999888766 345788899999998888875 566778999999998887763 67788885533
Q ss_pred ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccc-------cceeeCC---
Q 039497 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN-------GDIRQLT--- 480 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-------~~~~~l~--- 480 (642)
.-. +.+.+. .. +.+....|||+|++|+|+.. +...||.+........ +.+..+.
T Consensus 270 --------~wt----~erw~l-gs-grvqtacWspcGsfLLf~~s--gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 270 --------SWT----KERWIL-GS-GRVQTACWSPCGSFLLFACS--GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred --------cce----ecceec-cC-CceeeeeecCCCCEEEEEEc--CCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 110 222222 23 57888999999999999886 4456666654321110 0011110
Q ss_pred -----CC----CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEe
Q 039497 481 -----DG----PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528 (642)
Q Consensus 481 -----~~----~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 528 (642)
.+ .+....++|.|.|.+|+..-....--......|-++|........+
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel 390 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL 390 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence 11 2345667999999999988765421011334455566544333333
No 141
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.87 E-value=2.5e-06 Score=82.57 Aligned_cols=220 Identities=15% Similarity=0.101 Sum_probs=122.7
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (642)
....+|.||+++++... .....|-++|++.++.........+..+.-+++.+ +...+. ++.+.-+.++.
T Consensus 98 ~~~~ls~dgk~~~V~N~-TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~-F~~lC~-------DGsl~~v~Ld~-- 166 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNF-TPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRG-FSMLCG-------DGSLLTVTLDA-- 166 (342)
T ss_dssp GGEEE-TTSSEEEEEEE-SSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTE-EEEEET-------TSCEEEEEETS--
T ss_pred cceEEccCCcEEEEEcc-CCCCeEEEEECCCCceeeeecCCCEEEEEecCCCc-eEEEec-------CCceEEEEECC--
Confidence 35588999998877543 56688999999998876655534444333333333 333332 66777777765
Q ss_pred CCCCCCCCCccccceEEcccc-CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccc-cceeeCCC-----C---
Q 039497 413 DPSDDNNREEIPCDVKILTKE-ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN-GDIRQLTD-----G--- 482 (642)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-~~~~~l~~-----~--- 482 (642)
+ |++.. +...+... .+....++.++.++.+++|.+.. ..||..++...... .....+.. .
T Consensus 167 ~------Gk~~~-~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~---G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~Wr 236 (342)
T PF06433_consen 167 D------GKEAQ-KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYE---GNVYSADLSGDSAKFGKPWSLLTDAEKADGWR 236 (342)
T ss_dssp T------SSEEE-EEEEESSTTTS-B-S--EEETTTTEEEEEBTT---SEEEEEEETTSSEEEEEEEESS-HHHHHTTEE
T ss_pred C------CCEeE-eeccccCCCCcccccccceECCCCeEEEEecC---CEEEEEeccCCcccccCcccccCccccccCcC
Confidence 3 33211 11122221 11233456777788888888854 48999998754420 00111111 1
Q ss_pred CCcccceeEecCCCEEEEEecCCCCC--CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEE
Q 039497 483 PWIDTMPSWSPKGDLIAFSSNRHNPD--NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560 (642)
Q Consensus 483 ~~~~~~~~~spdG~~l~~~~~~~~~~--~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~ 560 (642)
++...-.++++..++||+.-..+... .....+||++|+++++........ . .+.+++.|.|.+=++|..
T Consensus 237 PGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~-------~~~Si~Vsqd~~P~L~~~ 307 (342)
T PF06433_consen 237 PGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--H-------PIDSIAVSQDDKPLLYAL 307 (342)
T ss_dssp E-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--E-------EESEEEEESSSS-EEEEE
T ss_pred CcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--C-------ccceEEEccCCCcEEEEE
Confidence 11223358888777777664432211 246789999999987654333221 1 346799999999777765
Q ss_pred ecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccC
Q 039497 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW 597 (642)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~ 597 (642)
+.+. ..|+++|..++++.+-..
T Consensus 308 ~~~~---------------~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 308 SAGD---------------GTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp ETTT---------------TEEEEEETTT--EEEEE-
T ss_pred cCCC---------------CeEEEEeCcCCcEEeehh
Confidence 5432 279999998887554443
No 142
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.86 E-value=5.5e-08 Score=87.31 Aligned_cols=184 Identities=17% Similarity=0.179 Sum_probs=125.3
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeE--Eee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWT--LIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~--l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
..+|+.|.++|+.... ..-|.+++++..+..+ +.. .+.+..+.|-...+.|+-.. ++..+++|+..+
T Consensus 105 ~~af~~ds~~lltgg~---ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSa-------dd~tVRLWD~rT 174 (334)
T KOG0278|consen 105 AVAFSQDSNYLLTGGQ---EKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSA-------DDKTVRLWDHRT 174 (334)
T ss_pred eEEecccchhhhccch---HHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeec-------cCCceEEEEecc
Confidence 4578999888877332 2334556665554322 222 56788888887777776554 378999999987
Q ss_pred ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccccee
Q 039497 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS 490 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~ 490 (642)
+. ..+.|... ..+.++.+|+||++|..+.. ..|..||.++=.. ..-...+..+.+.+
T Consensus 175 --------gt-----~v~sL~~~--s~VtSlEvs~dG~ilTia~g----ssV~Fwdaksf~~----lKs~k~P~nV~SAS 231 (334)
T KOG0278|consen 175 --------GT-----EVQSLEFN--SPVTSLEVSQDGRILTIAYG----SSVKFWDAKSFGL----LKSYKMPCNVESAS 231 (334)
T ss_pred --------Cc-----EEEEEecC--CCCcceeeccCCCEEEEecC----ceeEEeccccccc----eeeccCcccccccc
Confidence 33 45555444 36788999999998876652 2577788775432 33344567788889
Q ss_pred EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCc
Q 039497 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV 565 (642)
Q Consensus 491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~ 565 (642)
.+|+...++....+. -+|.+|..+++.......++.+ ++..+.|||||...+..+.++..
T Consensus 232 L~P~k~~fVaGged~--------~~~kfDy~TgeEi~~~nkgh~g-------pVhcVrFSPdGE~yAsGSEDGTi 291 (334)
T KOG0278|consen 232 LHPKKEFFVAGGEDF--------KVYKFDYNTGEEIGSYNKGHFG-------PVHCVRFSPDGELYASGSEDGTI 291 (334)
T ss_pred ccCCCceEEecCcce--------EEEEEeccCCceeeecccCCCC-------ceEEEEECCCCceeeccCCCceE
Confidence 999986554444433 3899999999887665445666 78899999999966666666644
No 143
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.86 E-value=2.1e-06 Score=82.21 Aligned_cols=239 Identities=15% Similarity=0.100 Sum_probs=149.1
Q ss_pred ccEEcCCC-CEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEE
Q 039497 334 FPSFSPDG-GLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV 408 (642)
Q Consensus 334 ~~~~spdg-~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~ 408 (642)
.+..+|+. ..++|.. +- ..-++++|..+++..+... .....+..|||||++||.+.+. +....+.+-+|+.
T Consensus 9 ~~a~~p~~~~avafaR-RP-G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd--~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFAR-RP-GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTEND--YETGRGVIGVYDA 84 (305)
T ss_pred ceeeCCCCCeEEEEEe-CC-CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccc--cCCCcEEEEEEEC
Confidence 44678844 4445544 22 3567788998888765544 2234578999999988877653 4456777888887
Q ss_pred EeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCC------C---------CceeEEEEECCCCccc
Q 039497 409 SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR------S---------GHKNLFVLDAVNGEFN 473 (642)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~------~---------g~~~l~~~d~~~g~~~ 473 (642)
.. +-+ .+..+.... -..-.+.+.|||+.|+++... . -...|..+|..+|+.
T Consensus 85 ~~---------~~~---ri~E~~s~G-IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~l- 150 (305)
T PF07433_consen 85 AR---------GYR---RIGEFPSHG-IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGAL- 150 (305)
T ss_pred cC---------CcE---EEeEecCCC-cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCce-
Confidence 63 100 344444433 334457899999999887531 1 145788898899986
Q ss_pred cceee--CCC--CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec-----CCCCCCCcccccc
Q 039497 474 GDIRQ--LTD--GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-----GPEGSGDVDRERI 544 (642)
Q Consensus 474 ~~~~~--l~~--~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-----~~~~~~~~~~~~~ 544 (642)
+.+ |.. +...+.++++++||. ++|.............-|.+.+... ..+.+... ...+ ++
T Consensus 151 --l~q~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~-~~~~~~~p~~~~~~l~~-------Y~ 219 (305)
T PF07433_consen 151 --LEQVELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGG-ALRLLPAPEEQWRRLNG-------YI 219 (305)
T ss_pred --eeeeecCccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCC-cceeccCChHHHHhhCC-------ce
Confidence 555 422 334678899999997 5555444333234455566665533 23333221 1223 67
Q ss_pred cceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeecC
Q 039497 545 NHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLR 619 (642)
Q Consensus 545 ~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~ 619 (642)
.+++++.||..+++++.+++ .+.+||..++.+.....- -+...++-.+++ +++++..
T Consensus 220 gSIa~~~~g~~ia~tsPrGg----------------~~~~~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 220 GSIAADRDGRLIAVTSPRGG----------------RVAVWDAATGRLLGSVPL-PDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred EEEEEeCCCCEEEEECCCCC----------------EEEEEECCCCCEeecccc-CceeeeeecCCc-eEEeCCC
Confidence 89999999999999998876 577888888876655432 122344444444 4455433
No 144
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.85 E-value=2.1e-07 Score=90.06 Aligned_cols=215 Identities=14% Similarity=0.156 Sum_probs=141.7
Q ss_pred eeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497 354 AGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT 431 (642)
Q Consensus 354 ~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 431 (642)
..+.++|...++...+.. ...+..+.++|+...++..+ .+..+++|.+.. .. ....+.
T Consensus 241 ~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aS-------ad~~i~vws~~~--------~s-----~~~~~~ 300 (506)
T KOG0289|consen 241 KTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITAS-------ADEIIRVWSVPL--------SS-----EPTSSR 300 (506)
T ss_pred CceEEEecchhhhhhhccCcceEEEEEEeccchhheeecC-------CcceEEeecccc--------cc-----Cccccc
Confidence 356667766665444433 34577888999988777665 367889998866 22 333333
Q ss_pred ccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC--CCcccceeEecCCCEEEEEecCCCCCC
Q 039497 432 KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG--PWIDTMPSWSPKGDLIAFSSNRHNPDN 509 (642)
Q Consensus 432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~--~~~~~~~~~spdG~~l~~~~~~~~~~~ 509 (642)
.+. ..+..+...|.|.||+.++++ + ..-..|..+|.. +...... .-.....+|+|||..+.....++
T Consensus 301 ~h~-~~V~~ls~h~tgeYllsAs~d-~--~w~Fsd~~~g~~---lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~---- 369 (506)
T KOG0289|consen 301 PHE-EPVTGLSLHPTGEYLLSASND-G--TWAFSDISSGSQ---LTVVSDETSDVEYTSAAFHPDGLIFGTGTPDG---- 369 (506)
T ss_pred ccc-ccceeeeeccCCcEEEEecCC-c--eEEEEEccCCcE---EEEEeeccccceeEEeeEcCCceEEeccCCCc----
Confidence 343 677888999999999988865 3 444556677764 4444432 23457789999997555444443
Q ss_pred CCceeEEEEeCCCCceEEeee-cCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcC
Q 039497 510 VEAFSLYVIKPDGSGLRRIHV-AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLD 588 (642)
Q Consensus 510 ~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 588 (642)
.|.+||++... .+.. .++.+ .+..++||.+|-+|+..++++ .|..||+.
T Consensus 370 ----~vkiwdlks~~--~~a~Fpght~-------~vk~i~FsENGY~Lat~add~-----------------~V~lwDLR 419 (506)
T KOG0289|consen 370 ----VVKIWDLKSQT--NVAKFPGHTG-------PVKAISFSENGYWLATAADDG-----------------SVKLWDLR 419 (506)
T ss_pred ----eEEEEEcCCcc--ccccCCCCCC-------ceeEEEeccCceEEEEEecCC-----------------eEEEEEeh
Confidence 48999997655 2322 24555 788999999999999988775 57788886
Q ss_pred CCc-eeeccC-CCCCCCCcEEecCCceEEeecCCCcccccceeeeeccc
Q 039497 589 GSG-LRRLTW-NGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEP 635 (642)
Q Consensus 589 ~~~-~~~lt~-~~~~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~ 635 (642)
.-+ .+.++- ....+.++.|.+.|++++.. ..+++.+.|.+.
T Consensus 420 Kl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~------g~~l~Vy~~~k~ 462 (506)
T KOG0289|consen 420 KLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA------GSDLQVYICKKK 462 (506)
T ss_pred hhcccceeeccccccceeEEEcCCCCeEEee------cceeEEEEEecc
Confidence 543 233332 22356789999999998665 234455555543
No 145
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=6.8e-05 Score=76.42 Aligned_cols=228 Identities=10% Similarity=0.037 Sum_probs=132.4
Q ss_pred eecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCccccccccCCCEEEEEEeccCCCcccc
Q 039497 38 RLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFK 117 (642)
Q Consensus 38 rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 117 (642)
.+..+...+..-.+. |--.++. .+-.+|..+||.++..-. .......+-...........+.++.-+..
T Consensus 8 k~~~rSdRVKsVd~H-PtePw~l-a~LynG~V~IWnyetqtm-VksfeV~~~PvRa~kfiaRknWiv~GsDD-------- 76 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFH-PTEPWIL-AALYNGDVQIWNYETQTM-VKSFEVSEVPVRAAKFIARKNWIVTGSDD-------- 76 (794)
T ss_pred HhhccCCceeeeecC-CCCceEE-EeeecCeeEEEeccccee-eeeeeecccchhhheeeeccceEEEecCC--------
Confidence 344566666677777 8877776 566789999999833220 00000000000000111133344443322
Q ss_pred cccceEEEEccCC-ceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee-cCCC-
Q 039497 118 SWSALYSTDLKAS-KFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC-ERGG- 194 (642)
Q Consensus 118 ~~~~l~~~~~~~~-~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~~- 194 (642)
.+|-+.+..++ +.+....+..+..+.++-|---+++.++++- .|-+|+-+.+-...-++ .+..
T Consensus 77 --~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm------------~iKlW~we~~wa~~qtfeGH~Hy 142 (794)
T KOG0276|consen 77 --MQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDM------------TIKLWDWENEWACEQTFEGHEHY 142 (794)
T ss_pred --ceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCcc------------EEEEeeccCceeeeeEEcCcceE
Confidence 15666677665 4556667777778888899999999888776 45566665554433333 3332
Q ss_pred --cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCc--EEEEEEeccCCceee
Q 039497 195 --WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGK--RLAVATRRKNRNFRH 270 (642)
Q Consensus 195 --~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~--~l~~~~~~~~~~~~~ 270 (642)
.+++.|...--|.+..-|.+..+|.+.... ....+..+...+..+.+-+-|. +|+. +.....
T Consensus 143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~---------~nfTl~gHekGVN~Vdyy~~gdkpylIs-----gaDD~t 208 (794)
T KOG0276|consen 143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPH---------PNFTLEGHEKGVNCVDYYTGGDKPYLIS-----GADDLT 208 (794)
T ss_pred EEEEEecCCCccceeeeeccccEEEEEcCCCC---------CceeeeccccCcceEEeccCCCcceEEe-----cCCCce
Confidence 358888875444443678888898875433 3356667765677777755553 4555 445569
Q ss_pred EEEEEeec--------CCCCcccCCeecCCCCEEEEEEeecC
Q 039497 271 IEIYDLTL--------NPNFHHYNPFVSANSEFIGYHRFRGE 304 (642)
Q Consensus 271 i~~~d~~~--------~~~~~~~~~~~spDg~~l~~~~~~~~ 304 (642)
+.+||.++ ++...+....+.|.=..|+..++++.
T Consensus 209 iKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGT 250 (794)
T KOG0276|consen 209 IKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGT 250 (794)
T ss_pred EEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCcc
Confidence 99999942 44444555555555544555444444
No 146
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=5.2e-05 Score=77.23 Aligned_cols=418 Identities=12% Similarity=0.074 Sum_probs=223.6
Q ss_pred eeeeEEEecCCCCCCCCCce-eeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCccccc
Q 039497 17 YGFDVFSIKSPFVNAPKFHE-HRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDR 95 (642)
Q Consensus 17 ~~~~i~~~~~~~~~~~~~~~-~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~ 95 (642)
|+|+|-+++... ... +-+--....++.++|- +--++|+. ...|...++|.++...+ ..... .+..|-+.
T Consensus 33 ynG~V~IWnyet-----qtmVksfeV~~~PvRa~kfi-aRknWiv~-GsDD~~IrVfnynt~ek-V~~Fe--AH~DyIR~ 102 (794)
T KOG0276|consen 33 YNGDVQIWNYET-----QTMVKSFEVSEVPVRAAKFI-ARKNWIVT-GSDDMQIRVFNYNTGEK-VKTFE--AHSDYIRS 102 (794)
T ss_pred ecCeeEEEeccc-----ceeeeeeeecccchhhheee-eccceEEE-ecCCceEEEEeccccee-eEEee--ccccceee
Confidence 788888888776 443 4444566778889999 88889994 44578888888744331 11111 12223333
Q ss_pred ccc-CCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCC-CCcEEEEEecCCCCCCCCCCCCee
Q 039497 96 PVA-RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSY-SGKFIAVASYESRPWPGEFHELNT 173 (642)
Q Consensus 96 ~~~-~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SP-DG~~la~~~~~~~~~~~~~~~~~~ 173 (642)
... +-.-.+.+++.+- ...+|..+-.=........+..+.++.+|.| |-...|.++-+.
T Consensus 103 iavHPt~P~vLtsSDDm-------~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr------------ 163 (794)
T KOG0276|consen 103 IAVHPTLPYVLTSSDDM-------TIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR------------ 163 (794)
T ss_pred eeecCCCCeEEecCCcc-------EEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc------------
Confidence 333 3333444444331 1246644433334555666777789999999 556677776555
Q ss_pred eEEEEEecCCCceeEee--cCC-CcceEeeCC-e-EEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccc
Q 039497 174 DIVVFQESDPNKRVIVC--ERG-GWPTWSGDS-T-IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTP 248 (642)
Q Consensus 174 ~l~~~~~~~g~~~~l~~--~~~-~~~~wspdg-~-~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 248 (642)
.|-+|.+.+..+-.... ..+ ..+.+-+-| + .+++. +.|....||.+..++ ..+.+.++...+...
T Consensus 164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsg-aDD~tiKvWDyQtk~---------CV~TLeGHt~Nvs~v 233 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISG-ADDLTIKVWDYQTKS---------CVQTLEGHTNNVSFV 233 (794)
T ss_pred cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEec-CCCceEEEeecchHH---------HHHHhhcccccceEE
Confidence 68899988776443332 222 345777666 4 44444 556666777665443 666777776566666
Q ss_pred eeecCCcEEEEEEeccCCceeeEEEEEeecCCCCc--------ccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC
Q 039497 249 AAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFH--------HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS 320 (642)
Q Consensus 249 ~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~--------~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 320 (642)
.|.|.=-.|+. ++...++++|+-.+-.... +...+-.+++..++.-- +... ....+..
T Consensus 234 ~fhp~lpiiis-----gsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~-Deg~--------i~v~lgr 299 (794)
T KOG0276|consen 234 FFHPELPIIIS-----GSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGF-DEGS--------VTVKLGR 299 (794)
T ss_pred EecCCCcEEEE-----ecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEec-cCCc--------EEEEccC
Confidence 66666555555 3444588888873211100 00111112222222211 1110 0111111
Q ss_pred CCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECC---------CCCeeEEee------cCCceeeeeecCCC
Q 039497 321 PVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD---------GSKRWTLIK------DRTAFYNSWSPTEK 385 (642)
Q Consensus 321 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~---------~~~~~~l~~------~~~~~~~~~spdg~ 385 (642)
.. -..+.++.|+ |++.. ..+|.-.+++ .++.-.+.. .-....++-||+|+
T Consensus 300 ee----------P~vsMd~~gK-Iiwa~----~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGr 364 (794)
T KOG0276|consen 300 EE----------PAVSMDSNGK-IIWAV----HSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGR 364 (794)
T ss_pred CC----------CceeecCCcc-EEEEc----CceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCc
Confidence 11 1224455564 66633 2334433332 233222222 12344678899999
Q ss_pred EEEEEEcCCCcccCCCeEEEEEE-EeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEE
Q 039497 386 HVIYTSTGPIFQSERATVQIARV-SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFV 464 (642)
Q Consensus 386 ~l~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~ 464 (642)
.++++. ++...||.. .. ..+. .+....+.|++|....+..... + .|.+
T Consensus 365 fV~Vcg--------dGEyiIyTala~---------------RnK~-----fG~~~eFvw~~dsne~avRes~-~--~vki 413 (794)
T KOG0276|consen 365 FVVVCG--------DGEYIIYTALAL---------------RNKA-----FGSGLEFVWAADSNEFAVRESN-G--NVKI 413 (794)
T ss_pred EEEEec--------CccEEEEEeeeh---------------hhcc-----cccceeEEEcCCCCeEEEEecC-C--ceEE
Confidence 998886 566666653 22 1111 1345578999996665554321 3 3444
Q ss_pred EECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccc
Q 039497 465 LDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERI 544 (642)
Q Consensus 465 ~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 544 (642)
+ +..+. .+.+... .. ..--| .|-+|.+.+++. |+.+|-+++.+.+-..- ..
T Consensus 414 ~--knfke---~ksi~~~-~~-~e~i~--gg~Llg~~ss~~---------~~fydW~~~~lVrrI~v-----------~~ 464 (794)
T KOG0276|consen 414 F--KNFKE---HKSIRPD-MS-AEGIF--GGPLLGVRSSDF---------LCFYDWESGELVRRIEV-----------TS 464 (794)
T ss_pred E--eccee---ccccccc-cc-eeeec--CCceEEEEeCCe---------EEEEEcccceEEEEEee-----------cc
Confidence 4 22332 2333322 11 11122 366666666654 88888777766443321 23
Q ss_pred cceEEcCCCCEEEEEEec
Q 039497 545 NHVCFSADGEWLLFTANL 562 (642)
Q Consensus 545 ~~~~~S~Dg~~l~~~~~~ 562 (642)
.++.|+.+|..++....+
T Consensus 465 k~v~w~d~g~lVai~~d~ 482 (794)
T KOG0276|consen 465 KHVYWSDNGELVAIAGDD 482 (794)
T ss_pred ceeEEecCCCEEEEEecC
Confidence 579999999977777654
No 147
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.82 E-value=3.2e-07 Score=98.31 Aligned_cols=169 Identities=17% Similarity=0.235 Sum_probs=107.6
Q ss_pred CccEEcCCCCEEEEEec-----CCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCC--c-ccCCCeEE
Q 039497 333 SFPSFSPDGGLIVFNHD-----FELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPI--F-QSERATVQ 404 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~-----~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~--~-~~~~~~~~ 404 (642)
..+.+||||++++|+.. .+...+||+.+..+ ..++++.......+.|+|||+.|+|+..+.. + .......+
T Consensus 353 sspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gq 431 (591)
T PRK13616 353 TSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQ 431 (591)
T ss_pred ccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCCCce
Confidence 47789999999999763 23457999999744 4477766556889999999999999875310 0 01112334
Q ss_pred EEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEE---EECCCCccc-cceeeCC
Q 039497 405 IARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFV---LDAVNGEFN-GDIRQLT 480 (642)
Q Consensus 405 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~---~d~~~g~~~-~~~~~l~ 480 (642)
+|.+.. + ++ .... ... +.+..+.|||||++|+|... + +||+ .....|+.. ..++.|.
T Consensus 432 l~~~~v--d-----~g-----e~~~--~~~-g~Issl~wSpDG~RiA~i~~--g--~v~Va~Vvr~~~G~~~l~~~~~l~ 492 (591)
T PRK13616 432 LARTPV--D-----AS-----AVAS--RVP-GPISELQLSRDGVRAAMIIG--G--KVYLAVVEQTEDGQYALTNPREVG 492 (591)
T ss_pred EEEEec--c-----Cc-----hhhh--ccC-CCcCeEEECCCCCEEEEEEC--C--EEEEEEEEeCCCCceeecccEEee
Confidence 444443 2 22 2222 222 46888999999999999883 3 6777 555556520 1112244
Q ss_pred CCCCc-ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEe
Q 039497 481 DGPWI-DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528 (642)
Q Consensus 481 ~~~~~-~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 528 (642)
..... ...+.|..++..+ ..... ....+|.+++++...+.+
T Consensus 493 ~~l~~~~~~l~W~~~~~L~-V~~~~------~~~~v~~v~vDG~~~~~~ 534 (591)
T PRK13616 493 PGLGDTAVSLDWRTGDSLV-VGRSD------PEHPVWYVNLDGSNSDAL 534 (591)
T ss_pred cccCCccccceEecCCEEE-EEecC------CCCceEEEecCCcccccc
Confidence 33333 4678999999854 44332 234589999998766543
No 148
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.81 E-value=5.2e-07 Score=84.20 Aligned_cols=182 Identities=15% Similarity=0.160 Sum_probs=109.8
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECC-CCCeeE----Eee-----cCCceeeeeecCCC-EEEEEEcCCCcccCCCe
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSD-GSKRWT----LIK-----DRTAFYNSWSPTEK-HVIYTSTGPIFQSERAT 402 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~-~~~~~~----l~~-----~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~ 402 (642)
.+.|||||.+|+. .-+..|.++|+. .+..-. ++. .+.+..++|+|-.. .+++.+. ...
T Consensus 163 sL~Fs~DGeqlfa----GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY-------~q~ 231 (406)
T KOG2919|consen 163 SLQFSPDGEQLFA----GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSY-------GQR 231 (406)
T ss_pred eEEecCCCCeEee----cccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecc-------cce
Confidence 4689999998866 335678888873 222111 111 34577889999655 5666554 234
Q ss_pred EEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC
Q 039497 403 VQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG 482 (642)
Q Consensus 403 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~ 482 (642)
+-||.-+. .+ ....+..+. +.+.++.|.+||++|+..+.++ ..|-.||+..-.. .+..|..+
T Consensus 232 ~giy~~~~--------~~-----pl~llggh~-gGvThL~~~edGn~lfsGaRk~--dkIl~WDiR~~~~--pv~~L~rh 293 (406)
T KOG2919|consen 232 VGIYNDDG--------RR-----PLQLLGGHG-GGVTHLQWCEDGNKLFSGARKD--DKILCWDIRYSRD--PVYALERH 293 (406)
T ss_pred eeeEecCC--------CC-----ceeeecccC-CCeeeEEeccCcCeecccccCC--CeEEEEeehhccc--hhhhhhhh
Confidence 44554422 12 444445444 8899999999999987666543 4788899864321 13334333
Q ss_pred CC-ccc--ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC-CceEEeeecCCCCCCCcccccccceEEcCCCCEEEE
Q 039497 483 PW-IDT--MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG-SGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLF 558 (642)
Q Consensus 483 ~~-~~~--~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~ 558 (642)
.. ... .+...|+|++|+-...++. |.+||+++ ++...++.. ... -+..+++.|--..++.
T Consensus 294 v~~TNQRI~FDld~~~~~LasG~tdG~--------V~vwdlk~~gn~~sv~~~-~sd-------~vNgvslnP~mpilat 357 (406)
T KOG2919|consen 294 VGDTNQRILFDLDPKGEILASGDTDGS--------VRVWDLKDLGNEVSVTGN-YSD-------TVNGVSLNPIMPILAT 357 (406)
T ss_pred ccCccceEEEecCCCCceeeccCCCcc--------EEEEecCCCCCccccccc-ccc-------cccceecCcccceeee
Confidence 22 122 2456799998887766654 88999987 664444432 222 3456777777554444
Q ss_pred EE
Q 039497 559 TA 560 (642)
Q Consensus 559 ~~ 560 (642)
.+
T Consensus 358 ss 359 (406)
T KOG2919|consen 358 SS 359 (406)
T ss_pred cc
Confidence 44
No 149
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.79 E-value=3.5e-07 Score=95.95 Aligned_cols=289 Identities=13% Similarity=0.096 Sum_probs=155.5
Q ss_pred CCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCC-CCcc------------cccCCCCCCccccccccCCCEEEEEE
Q 039497 41 DGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPG-SSKT------------ELLPSIPCSLFHDRPVARNNKLFFIS 107 (642)
Q Consensus 41 ~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~-g~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~~ 107 (642)
.|.+....-.|| +||++|| ++..||..+||.+... -... ...+..+...... -...+.......
T Consensus 265 ah~gaIw~mKFS-~DGKyLA-saGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~-~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 265 AHKGAIWAMKFS-HDGKYLA-SAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSE-EKISSRTSSSRK 341 (712)
T ss_pred ccCCcEEEEEeC-CCCceee-ecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccc-cccccccccccc
Confidence 688888999999 9999999 6677999999998221 1000 0000000000000 000011111100
Q ss_pred eccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCcee
Q 039497 108 AHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRV 187 (642)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 187 (642)
......... ..+.......-...+..+.+.....+||-++ +|+.++.+. .+.+|.+...+-..
T Consensus 342 ~~~s~~~~~----p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDK------------TVRLWh~~~~~CL~ 404 (712)
T KOG0283|consen 342 GSQSPCVLL----PLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDK------------TVRLWHPGRKECLK 404 (712)
T ss_pred ccCCccccC----CCccccccccchhhhhccchhheecccccCC-eeEeccccc------------cEEeecCCCcceee
Confidence 000000000 0000001111112223344445778999765 667777666 68889888777777
Q ss_pred EeecCC--CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccC
Q 039497 188 IVCERG--GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKN 265 (642)
Q Consensus 188 l~~~~~--~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~ 265 (642)
++.+.. ..++|.|-..-||++..-||..+||.+. .. ++........-+..+.++|||+..++..-.+
T Consensus 405 ~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~--d~--------~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G- 473 (712)
T KOG0283|consen 405 VFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS--DK--------KVVDWNDLRDLITAVCYSPDGKGAVIGTFNG- 473 (712)
T ss_pred EEecCCeeEEEEecccCCCcEeecccccceEEeecC--cC--------eeEeehhhhhhheeEEeccCCceEEEEEecc-
Confidence 766555 4579999887777765778977887663 21 2222233333566788999999888744333
Q ss_pred CceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC----CCceeEEeeeCCCccEEcCC-
Q 039497 266 RNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS----PVKELRMLRLNGSFPSFSPD- 340 (642)
Q Consensus 266 ~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~spd- 340 (642)
..++|+..... +... +...+.. ....++ .+.+.|.
T Consensus 474 ----~C~fY~t~~lk---------------~~~~--------------~~I~~~~~Kk~~~~rIT-------G~Q~~p~~ 513 (712)
T KOG0283|consen 474 ----YCRFYDTEGLK---------------LVSD--------------FHIRLHNKKKKQGKRIT-------GLQFFPGD 513 (712)
T ss_pred ----EEEEEEccCCe---------------EEEe--------------eeEeeccCccccCceee-------eeEecCCC
Confidence 66777652111 1110 0111110 111122 2233322
Q ss_pred CCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 341 GGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 341 g~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
-+.|++++ ...+|.++|........... ........|+.||++|+.++. +..++||.++.
T Consensus 514 ~~~vLVTS---nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se-------Ds~VYiW~~~~ 577 (712)
T KOG0283|consen 514 PDEVLVTS---NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE-------DSWVYIWKNDS 577 (712)
T ss_pred CCeEEEec---CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeec-------CceEEEEeCCC
Confidence 22455544 34788999975544332222 334567889999999999984 78999999855
No 150
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=5.9e-05 Score=79.95 Aligned_cols=453 Identities=10% Similarity=0.047 Sum_probs=238.8
Q ss_pred CceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCC---cccccCCCCCCccccccccCCCEEEEEEeccCCCccccc
Q 039497 42 GTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSS---KTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKS 118 (642)
Q Consensus 42 ~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 118 (642)
-.+.+....|. |.--+|. ++--+|..++|.+.-+-- -.++-+++. ...+..+.-+|++.+++-
T Consensus 8 kSsRvKglsFH-P~rPwIL-tslHsG~IQlWDYRM~tli~rFdeHdGpVR------gv~FH~~qplFVSGGDDy------ 73 (1202)
T KOG0292|consen 8 KSSRVKGLSFH-PKRPWIL-TSLHSGVIQLWDYRMGTLIDRFDEHDGPVR------GVDFHPTQPLFVSGGDDY------ 73 (1202)
T ss_pred ccccccceecC-CCCCEEE-EeecCceeeeehhhhhhHHhhhhccCCccc------eeeecCCCCeEEecCCcc------
Confidence 34455667788 8888888 667789999998722210 011112222 233444555666665532
Q ss_pred ccceEEEEccCCc-eEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---
Q 039497 119 WSALYSTDLKASK-FTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG--- 194 (642)
Q Consensus 119 ~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~--- 194 (642)
...+| +.+..+ .-.|..+..+.....|-+.=-||+.++++. .|.+|+-.+++...+...+..
T Consensus 74 kIkVW--nYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQ------------TIrIWNwqsr~~iavltGHnHYVM 139 (1202)
T KOG0292|consen 74 KIKVW--NYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQ------------TIRIWNWQSRKCIAVLTGHNHYVM 139 (1202)
T ss_pred EEEEE--ecccceehhhhccccceeEEeeccCCCceEEEccCCC------------eEEEEeccCCceEEEEecCceEEE
Confidence 22466 444332 345556666667777888888999999887 788999999887776665553
Q ss_pred cceEeeCCeEEEEEecCCCceEEEEEecCC--Ccccc------------------cCCccceeeCCCCCccccceeecCC
Q 039497 195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPE--NLEFL------------------GFPIAPTRVTPPGVHCFTPAAFHDG 254 (642)
Q Consensus 195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~--~~~~~------------------~~~~~~~~l~~~~~~~~~~~~SpdG 254 (642)
..+|.|...+++++ .-|.+..+|.+.--. ..++. .|......+.+++..+...+|.|--
T Consensus 140 cAqFhptEDlIVSa-SLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl 218 (1202)
T KOG0292|consen 140 CAQFHPTEDLIVSA-SLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL 218 (1202)
T ss_pred eeccCCccceEEEe-cccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc
Confidence 35899977777776 456666666442100 00000 0222223345566667777887776
Q ss_pred cEEEEEEeccCCceeeEEEEEe----------ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCce
Q 039497 255 KRLAVATRRKNRNFRHIEIYDL----------TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKE 324 (642)
Q Consensus 255 ~~l~~~~~~~~~~~~~i~~~d~----------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (642)
-.|+. |...+.+.+|.+ ..++...++...+.|....|+...+++. ...|-........
T Consensus 219 pliVS-----G~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks------irVwDm~kRt~v~- 286 (1202)
T KOG0292|consen 219 PLIVS-----GADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS------IRVWDMTKRTSVQ- 286 (1202)
T ss_pred ceEEe-----cCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCcc------EEEEeccccccee-
Confidence 65555 444557778777 2355666677777787766666654443 3333322111111
Q ss_pred eEEeeeCCC--ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCe
Q 039497 325 LRMLRLNGS--FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERAT 402 (642)
Q Consensus 325 ~~~~~~~~~--~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 402 (642)
+..+..++ .++-+|..+. +-.--++|-....... ..+++.-+++.|+|+. +..
T Consensus 287 -tfrrendRFW~laahP~lNL-------------fAAgHDsGm~VFkleR---Erpa~~v~~n~LfYvk--------d~~ 341 (1202)
T KOG0292|consen 287 -TFRRENDRFWILAAHPELNL-------------FAAGHDSGMIVFKLER---ERPAYAVNGNGLFYVK--------DRF 341 (1202)
T ss_pred -eeeccCCeEEEEEecCCcce-------------eeeecCCceEEEEEcc---cCceEEEcCCEEEEEc--------cce
Confidence 11111111 1223444443 2222233322222110 1233334567788876 445
Q ss_pred EEEEEEEeecCCCCCCCCCccccceEEccccC--CCCccCcEECCCCCeEEEEeC-CCCceeEEEEECC-CCccccceee
Q 039497 403 VQIARVSFQLDPSDDNNREEIPCDVKILTKEE--TGNNAFPSCSPDGKFLVFRSG-RSGHKNLFVLDAV-NGEFNGDIRQ 478 (642)
Q Consensus 403 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~SpDg~~l~~~~~-~~g~~~l~~~d~~-~g~~~~~~~~ 478 (642)
++.+++.. . ... ....+.... .....+++++|-...+...++ .++...|+.+.-+ .|.. ..+.
T Consensus 342 i~~~d~~t--~------~d~---~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~--~~~~ 408 (1202)
T KOG0292|consen 342 IRSYDLRT--Q------KDT---AVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVS--DGKD 408 (1202)
T ss_pred EEeeeccc--c------ccc---eeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccC--Cchh
Confidence 55555544 1 111 222222211 134456788887777766654 3455677777655 2221 0112
Q ss_pred CCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEE
Q 039497 479 LTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLF 558 (642)
Q Consensus 479 l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~ 558 (642)
...+++. ...|-.-.+..++..... ++.+-++..+..+.+.... ....+.+.-+|..|+.
T Consensus 409 ~~k~tG~--~a~fvarNrfavl~k~~~--------~v~ik~l~N~vtkkl~~~~----------~~~~IF~ag~g~lll~ 468 (1202)
T KOG0292|consen 409 VKKGTGE--GALFVARNRFAVLDKSNE--------QVVIKNLKNKVTKKLLLPE----------STDDIFYAGTGNLLLR 468 (1202)
T ss_pred hhcCCCC--ceEEEEecceEEEEecCc--------ceEEecccchhhhcccCcc----------cccceeeccCccEEEE
Confidence 2222221 234433333333333222 2666677665555443321 2345677777764443
Q ss_pred EEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee-eccCCCCCCCCcEEecCCceE
Q 039497 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR-RLTWNGYENGTPAWHPGNQLD 614 (642)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~lt~~~~~~~~~~~s~dg~~~ 614 (642)
+.+ .|.++++..+... .+.. ..+....||.|++++
T Consensus 469 -~~~------------------~v~lfdvQq~~~~~si~~--s~vkyvvws~dm~~v 504 (1202)
T KOG0292|consen 469 -SPD------------------SVTLFDVQQKKKVGSIKV--SKVKYVVWSNDMSRV 504 (1202)
T ss_pred -cCC------------------eEEEEEeecceEEEEEec--CceeEEEEcCccchh
Confidence 322 6778888775533 2222 345678999998654
No 151
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.78 E-value=9.5e-08 Score=91.84 Aligned_cols=229 Identities=17% Similarity=0.097 Sum_probs=143.0
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVS 409 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~ 409 (642)
...|-++...++.... ...|.+|+..+.+...+.. .+.+..+.|.+++++++..++ +...++|.++
T Consensus 180 ~v~~l~~sdtlatgg~---Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~-------d~~~r~Wnvd 249 (459)
T KOG0288|consen 180 DVEFLRNSDTLATGGS---DRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASN-------DKNLRLWNVD 249 (459)
T ss_pred eeEEccCcchhhhcch---hhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecC-------CCceeeeecc
Confidence 3466666555554322 2445556665555222211 566889999999999988764 7788999986
Q ss_pred eecCCCCCCCCCccccceEEccccCCCCccCcEE---------------------------------CCCCCeE----EE
Q 039497 410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSC---------------------------------SPDGKFL----VF 452 (642)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------------------------------SpDg~~l----~~ 452 (642)
. .. ....|+.+. ..+..+.| |.+...+ .+
T Consensus 250 ~--------~r-----~~~TLsGHt-dkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~ 315 (459)
T KOG0288|consen 250 S--------LR-----LRHTLSGHT-DKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDV 315 (459)
T ss_pred c--------hh-----hhhhhcccc-cceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceee
Confidence 5 12 122222222 11111111 1111111 12
Q ss_pred EeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC
Q 039497 453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532 (642)
Q Consensus 453 ~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~ 532 (642)
.+.. ....|..||..++.. .......+.+.++..+++|..|+..+.++. |-++|+.+.+.++.....
T Consensus 316 ~SgH-~DkkvRfwD~Rs~~~----~~sv~~gg~vtSl~ls~~g~~lLsssRDdt--------l~viDlRt~eI~~~~sA~ 382 (459)
T KOG0288|consen 316 ISGH-FDKKVRFWDIRSADK----TRSVPLGGRVTSLDLSMDGLELLSSSRDDT--------LKVIDLRTKEIRQTFSAE 382 (459)
T ss_pred eecc-cccceEEEeccCCce----eeEeecCcceeeEeeccCCeEEeeecCCCc--------eeeeecccccEEEEeecc
Confidence 2221 234688899887764 444444467889999999999888866654 899999998887655421
Q ss_pred CCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee-eccCCCC--CCCCcEEec
Q 039497 533 PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR-RLTWNGY--ENGTPAWHP 609 (642)
Q Consensus 533 ~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~lt~~~~--~~~~~~~s~ 609 (642)
-.. .......+.||||+.+++..+.++ .||+|++.++++. ++..... .+.+++|+|
T Consensus 383 g~k----~asDwtrvvfSpd~~YvaAGS~dg-----------------sv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~ 441 (459)
T KOG0288|consen 383 GFK----CASDWTRVVFSPDGSYVAAGSADG-----------------SVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP 441 (459)
T ss_pred ccc----cccccceeEECCCCceeeeccCCC-----------------cEEEEEccCceEEEEeccCCCCcceEEEEEcC
Confidence 000 011346789999999999888765 8999999888754 3333322 368999999
Q ss_pred CCceEEeecCC
Q 039497 610 GNQLDLGKLRL 620 (642)
Q Consensus 610 dg~~~~~~~~~ 620 (642)
-|.++++..+.
T Consensus 442 sG~~Llsadk~ 452 (459)
T KOG0288|consen 442 SGSGLLSADKQ 452 (459)
T ss_pred CCchhhcccCC
Confidence 99999887663
No 152
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.78 E-value=1.7e-06 Score=83.97 Aligned_cols=223 Identities=13% Similarity=0.119 Sum_probs=144.1
Q ss_pred cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412 (642)
Q Consensus 335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (642)
..++|+...++..+. ...|+++.........+.. ...+..+...|.|++|+..++ ++...+.++..
T Consensus 267 v~~~~~~~~v~~aSa---d~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~-------d~~w~Fsd~~~-- 334 (506)
T KOG0289|consen 267 VKFHKDLDTVITASA---DEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASN-------DGTWAFSDISS-- 334 (506)
T ss_pred EEeccchhheeecCC---cceEEeeccccccCccccccccccceeeeeccCCcEEEEecC-------CceEEEEEccC--
Confidence 366777765544332 3455555544333233222 667888889999999998874 55666666654
Q ss_pred CCCCCCCCCccccceEEcccc-CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeE
Q 039497 413 DPSDDNNREEIPCDVKILTKE-ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491 (642)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~ 491 (642)
+. ........ ........+|+|||-.+.... -+..|-+||+..+.. +..+..+.+.+..++|
T Consensus 335 ------g~-----~lt~vs~~~s~v~~ts~~fHpDgLifgtgt---~d~~vkiwdlks~~~---~a~Fpght~~vk~i~F 397 (506)
T KOG0289|consen 335 ------GS-----QLTVVSDETSDVEYTSAAFHPDGLIFGTGT---PDGVVKIWDLKSQTN---VAKFPGHTGPVKAISF 397 (506)
T ss_pred ------Cc-----EEEEEeeccccceeEEeeEcCCceEEeccC---CCceEEEEEcCCccc---cccCCCCCCceeEEEe
Confidence 22 33333332 113467789999995443322 234888999987765 6778888888999999
Q ss_pred ecCCCEEEEEecCCCCCCCCceeEEEEeCCCC-ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCC
Q 039497 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS-GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV 570 (642)
Q Consensus 492 spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~ 570 (642)
+.+|-||+...+++. |.+||+..- ..+.+...... .+..+.|...|++|+...++-
T Consensus 398 sENGY~Lat~add~~--------V~lwDLRKl~n~kt~~l~~~~--------~v~s~~fD~SGt~L~~~g~~l------- 454 (506)
T KOG0289|consen 398 SENGYWLATAADDGS--------VKLWDLRKLKNFKTIQLDEKK--------EVNSLSFDQSGTYLGIAGSDL------- 454 (506)
T ss_pred ccCceEEEEEecCCe--------EEEEEehhhcccceeeccccc--------cceeEEEcCCCCeEEeeccee-------
Confidence 999999999988764 999999643 33333332211 357899999999998774321
Q ss_pred CCCCCCCCCCcEEEEEcCCCc---eeeccCCCCCCCCcEEecCCceEEeecC
Q 039497 571 SWPNQFQPYGDLYVVKLDGSG---LRRLTWNGYENGTPAWHPGNQLDLGKLR 619 (642)
Q Consensus 571 ~~~~~~~~~~~l~~~~~~~~~---~~~lt~~~~~~~~~~~s~dg~~~~~~~~ 619 (642)
.||.++-.++. ...+..+.+....+.|...-+++++..+
T Consensus 455 ----------~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~sm 496 (506)
T KOG0289|consen 455 ----------QVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSM 496 (506)
T ss_pred ----------EEEEEecccccceeeehhhhcccccceeeecccceEEeeccc
Confidence 67766655544 3344445555567778777777766543
No 153
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.77 E-value=5.5e-06 Score=82.53 Aligned_cols=132 Identities=11% Similarity=-0.031 Sum_probs=82.5
Q ss_pred CCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCC-CceeEeecCCC--cceEeeCCeEEEEEecCCCce
Q 039497 139 GVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDP-NKRVIVCERGG--WPTWSGDSTIYFHRQADDGWW 215 (642)
Q Consensus 139 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~l~~~~~~--~~~wspdg~~~~~~~~~~g~~ 215 (642)
.....+++|.|+...|+|.. +..+++.+++-. +..+.-...+- ...|++.+.++++. ++|-.+
T Consensus 145 ~~~v~c~~W~p~S~~vl~c~-------------g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sg-GED~kf 210 (737)
T KOG1524|consen 145 EESIRCARWAPNSNSIVFCQ-------------GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASG-GEDFRF 210 (737)
T ss_pred CceeEEEEECCCCCceEEec-------------CCeEEEeecccccceeEEeccCcEEEEeecCccccceeec-CCceeE
Confidence 33456689999999999985 346788777543 33333333332 35999999888887 566655
Q ss_pred EEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCE
Q 039497 216 SIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEF 295 (642)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~ 295 (642)
.|| |..+. ....-..+++.+.+++|.||-.+++. ... .++ +.....+++...+||+||+.
T Consensus 211 KvW--D~~G~--------~Lf~S~~~ey~ITSva~npd~~~~v~--S~n-----t~R---~~~p~~GSifnlsWS~DGTQ 270 (737)
T KOG1524|consen 211 KIW--DAQGA--------NLFTSAAEEYAITSVAFNPEKDYLLW--SYN-----TAR---FSSPRVGSIFNLSWSADGTQ 270 (737)
T ss_pred Eee--cccCc--------ccccCChhccceeeeeeccccceeee--eee-----eee---ecCCCccceEEEEEcCCCce
Confidence 665 33332 22222344677889999999433333 111 222 44445567788899999999
Q ss_pred EEEEEeecC
Q 039497 296 IGYHRFRGE 304 (642)
Q Consensus 296 l~~~~~~~~ 304 (642)
++.....|.
T Consensus 271 ~a~gt~~G~ 279 (737)
T KOG1524|consen 271 ATCGTSTGQ 279 (737)
T ss_pred eeccccCce
Confidence 877544433
No 154
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.76 E-value=1.1e-05 Score=84.87 Aligned_cols=266 Identities=16% Similarity=0.088 Sum_probs=155.0
Q ss_pred eecCCCCEEEEEEeecCCCCCCcccceEeeccCCCc-eeEEeeeCCCccEEcCCCCEEEEEecCCC--------ceeEEE
Q 039497 288 FVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVK-ELRMLRLNGSFPSFSPDGGLIVFNHDFEL--------NAGIKI 358 (642)
Q Consensus 288 ~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~--------~~~l~~ 358 (642)
.+||||++++|....++. ....+.+..+..... .-.+.......+.|++||+.++|...... ...||+
T Consensus 130 ~~Spdg~~la~~~s~~G~---e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 130 SVSPDGKRLAYSLSDGGS---EWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EETTTSSEEEEEEEETTS---SEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eECCCCCEEEEEecCCCC---ceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 689999999998766653 223445555544411 11111222233899999999999775432 678999
Q ss_pred EECCCCCee--EEee---cCC-ceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc
Q 039497 359 AKSDGSKRW--TLIK---DRT-AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK 432 (642)
Q Consensus 359 ~d~~~~~~~--~l~~---~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 432 (642)
+.+.+.... .+.. ... ...+..|+|+++|++.... ... ...+|.++. . .+.......+.+..
T Consensus 207 ~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~----~~~-~s~v~~~d~--~-----~~~~~~~~~~~l~~ 274 (414)
T PF02897_consen 207 HKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSS----GTS-ESEVYLLDL--D-----DGGSPDAKPKLLSP 274 (414)
T ss_dssp EETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEES----SSS-EEEEEEEEC--C-----CTTTSS-SEEEEEE
T ss_pred EECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEc----ccc-CCeEEEEec--c-----ccCCCcCCcEEEeC
Confidence 999877654 3333 222 4477889999999887753 122 467777776 2 11000014555554
Q ss_pred cCCCCccCcEECCCCCeEEEEeCCC-CceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCC
Q 039497 433 EETGNNAFPSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVE 511 (642)
Q Consensus 433 ~~~~~~~~~~~SpDg~~l~~~~~~~-g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~ 511 (642)
...+....+.. .|..+++.++++ ....|+.+++.+.........+........--.++..+++|++....+ .
T Consensus 275 ~~~~~~~~v~~--~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~-----~ 347 (414)
T PF02897_consen 275 REDGVEYYVDH--HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYREN-----G 347 (414)
T ss_dssp SSSS-EEEEEE--ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEET-----T
T ss_pred CCCceEEEEEc--cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEEC-----C
Confidence 33122222222 266676666654 356999999987652000124444333223335566677888777765 5
Q ss_pred ceeEEEEeCC-CCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497 512 AFSLYVIKPD-GSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590 (642)
Q Consensus 512 ~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 590 (642)
..+|+++++. +.....+.... .+ .+......+++..+.|....-.. ...+|.+|+.++
T Consensus 348 ~~~l~v~~~~~~~~~~~~~~p~-~g-------~v~~~~~~~~~~~~~~~~ss~~~-------------P~~~y~~d~~t~ 406 (414)
T PF02897_consen 348 SSRLRVYDLDDGKESREIPLPE-AG-------SVSGVSGDFDSDELRFSYSSFTT-------------PPTVYRYDLATG 406 (414)
T ss_dssp EEEEEEEETT-TEEEEEEESSS-SS-------EEEEEES-TT-SEEEEEEEETTE-------------EEEEEEEETTTT
T ss_pred ccEEEEEECCCCcEEeeecCCc-ce-------EEeccCCCCCCCEEEEEEeCCCC-------------CCEEEEEECCCC
Confidence 7889999999 55555554432 22 23445556788888887764332 349999999999
Q ss_pred ceeecc
Q 039497 591 GLRRLT 596 (642)
Q Consensus 591 ~~~~lt 596 (642)
+.+.+.
T Consensus 407 ~~~~~k 412 (414)
T PF02897_consen 407 ELTLLK 412 (414)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 887764
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.75 E-value=1.2e-06 Score=86.28 Aligned_cols=210 Identities=15% Similarity=0.163 Sum_probs=138.4
Q ss_pred ceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497 353 NAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL 430 (642)
Q Consensus 353 ~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 430 (642)
.+.+-+||+......+... ...+..+.+.-...+|+-++. .+.+.|..+.+ +. ....+
T Consensus 100 ~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~-------gGdiiih~~~t--------~~-----~tt~f 159 (673)
T KOG4378|consen 100 SGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSD-------GGDIIIHGTKT--------KQ-----KTTTF 159 (673)
T ss_pred CceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEecc-------CCcEEEEeccc--------Cc-----cccce
Confidence 3556667776443322222 345677788888888988874 46666666655 22 45556
Q ss_pred cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCC
Q 039497 431 TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV 510 (642)
Q Consensus 431 ~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~ 510 (642)
.......+..+.+||--+.++.....+| .+.+||++ |.. ........+......+.|||....|+..-.-.
T Consensus 160 ~~~sgqsvRll~ys~skr~lL~~asd~G--~VtlwDv~-g~s-p~~~~~~~HsAP~~gicfspsne~l~vsVG~D----- 230 (673)
T KOG4378|consen 160 TIDSGQSVRLLRYSPSKRFLLSIASDKG--AVTLWDVQ-GMS-PIFHASEAHSAPCRGICFSPSNEALLVSVGYD----- 230 (673)
T ss_pred ecCCCCeEEEeecccccceeeEeeccCC--eEEEEecc-CCC-cccchhhhccCCcCcceecCCccceEEEeccc-----
Confidence 5554345668899999999988877665 67788887 442 01122334555667789999887766655433
Q ss_pred CceeEEEEeCCCCceE-EeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC
Q 039497 511 EAFSLYVIKPDGSGLR-RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589 (642)
Q Consensus 511 ~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 589 (642)
..|++||....+.. .|+- .. +...++|+++|.+|+.....+ +|+.||+.+
T Consensus 231 --kki~~yD~~s~~s~~~l~y---~~-------Plstvaf~~~G~~L~aG~s~G-----------------~~i~YD~R~ 281 (673)
T KOG4378|consen 231 --KKINIYDIRSQASTDRLTY---SH-------PLSTVAFSECGTYLCAGNSKG-----------------ELIAYDMRS 281 (673)
T ss_pred --ceEEEeecccccccceeee---cC-------CcceeeecCCceEEEeecCCc-----------------eEEEEeccc
Confidence 34999999765443 3332 22 557899999999998877654 899999987
Q ss_pred Cc--eeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497 590 SG--LRRLTWNGYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 590 ~~--~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
.. ++.+..+...+..++|-+-- .+++..++.
T Consensus 282 ~k~Pv~v~sah~~sVt~vafq~s~-tvltkssln 314 (673)
T KOG4378|consen 282 TKAPVAVRSAHDASVTRVAFQPSP-TVLTKSSLN 314 (673)
T ss_pred CCCCceEeeecccceeEEEeeecc-eeeeccccc
Confidence 54 55666677778888886654 555554443
No 156
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=2.6e-07 Score=89.36 Aligned_cols=191 Identities=12% Similarity=0.055 Sum_probs=120.4
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCC--eeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK--RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
..++++||..|+.... ...+.+++...-. .........+.++.|||||+.|++++ ....++|+++.
T Consensus 149 ~vaf~~~gs~latgg~---dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig--------~d~~~VW~~~~- 216 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGT---DGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIG--------ADSARVWSVNT- 216 (398)
T ss_pred EEEEcCCCCEeeeccc---cceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEec--------CCceEEEEecc-
Confidence 4588999998888543 3455555532222 12222267899999999999999987 34889999976
Q ss_pred cCCCCCCCCCccccceEEcc-ccCCCCccCcEECCCC---CeEEEEeCCC-CceeEEEEECCCCccccceeeCCCCCCcc
Q 039497 412 LDPSDDNNREEIPCDVKILT-KEETGNNAFPSCSPDG---KFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDGPWID 486 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~SpDg---~~l~~~~~~~-g~~~l~~~d~~~g~~~~~~~~l~~~~~~~ 486 (642)
+. .....+ ...+.......|+-|+ ...+++.... +...++..-+..+....+..+.......+
T Consensus 217 -------g~-----~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~si 284 (398)
T KOG0771|consen 217 -------GA-----ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSI 284 (398)
T ss_pred -------Cc-----hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcc
Confidence 32 444444 2222455667888887 4444444322 22222222222221000124444444456
Q ss_pred cceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 487 ~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
..++.|+||++++....++. |-+++...-+.-++.+..+.. -++.+.|+||.++++-++.+.
T Consensus 285 Ssl~VS~dGkf~AlGT~dGs--------Vai~~~~~lq~~~~vk~aH~~-------~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 285 SSLAVSDDGKFLALGTMDGS--------VAIYDAKSLQRLQYVKEAHLG-------FVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred eeEEEcCCCcEEEEeccCCc--------EEEEEeceeeeeEeehhhhee-------eeeeEEEcCCcCcccccccCC
Confidence 78899999999999998764 788887665555555555555 678999999999998776654
No 157
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.74 E-value=0.00023 Score=80.91 Aligned_cols=112 Identities=15% Similarity=0.103 Sum_probs=69.5
Q ss_pred CCceeCCCCcEEEEEecCCCCCCCCCCCC-eeeEEEEEecCCCceeEeecCC---CcceEeeCCeEEEEEecCCCceEEE
Q 039497 143 YSPSVSYSGKFIAVASYESRPWPGEFHEL-NTDIVVFQESDPNKRVIVCERG---GWPTWSGDSTIYFHRQADDGWWSIF 218 (642)
Q Consensus 143 ~~~~~SPDG~~la~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~l~~~~~---~~~~wspdg~~~~~~~~~~g~~~l~ 218 (642)
...+|=.||+|+|...-.. ..+ ...|.+|+.+ |...-...+.. +.++|.|.|.++++.....+...|.
T Consensus 213 ~~ISWRGDG~yFAVss~~~-------~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~Vv 284 (928)
T PF04762_consen 213 VRISWRGDGEYFAVSSVEP-------ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVV 284 (928)
T ss_pred eEEEECCCCcEEEEEEEEc-------CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEE
Confidence 4568999999999776422 112 4677788876 33333322222 3569999998777764445555666
Q ss_pred EEecCCCcccccCCcccee--eC--CCCCccccceeecCCcEEEEEEeccCCceeeEEEEEe
Q 039497 219 RVSFPENLEFLGFPIAPTR--VT--PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL 276 (642)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~--l~--~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~ 276 (642)
-+...|- +-.. +. ..+..+..+.|++|+..|++...+ .+.+|..
T Consensus 285 FfErNGL--------rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~------~vqLWt~ 332 (928)
T PF04762_consen 285 FFERNGL--------RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED------RVQLWTR 332 (928)
T ss_pred EEecCCc--------EeeeEecCCCCCCceeeEEEECCCCCEEEEEecC------CceEEEe
Confidence 6655543 1111 11 234467789999999999885532 3777766
No 158
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.73 E-value=2.9e-06 Score=79.32 Aligned_cols=199 Identities=15% Similarity=0.105 Sum_probs=117.0
Q ss_pred cCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 338 SPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 338 spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
-|+...++..+. ..-|.++|.-+++.+.... -....++.|||||.+|+..- ...++++++..
T Consensus 120 qP~t~l~a~ssr---~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy--------krcirvFdt~R 188 (406)
T KOG2919|consen 120 QPSTNLFAVSSR---DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY--------KRCIRVFDTSR 188 (406)
T ss_pred CCccceeeeccc---cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc--------cceEEEeeccC
Confidence 455554444332 4668888988887655433 22456889999999998765 56788888754
Q ss_pred ecCCCCCCCCCccccceE-EccccC---CCCccCcEECCCCC-eEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCc
Q 039497 411 QLDPSDDNNREEIPCDVK-ILTKEE---TGNNAFPSCSPDGK-FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWI 485 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~~SpDg~-~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~ 485 (642)
. |... ... .++... .+.+..++|||-.. .++..+.. ....||..+ .+.. +..|-.+.+.
T Consensus 189 --p-----Gr~c---~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~-q~~giy~~~--~~~p---l~llggh~gG 252 (406)
T KOG2919|consen 189 --P-----GRDC---PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYG-QRVGIYNDD--GRRP---LQLLGGHGGG 252 (406)
T ss_pred --C-----CCCC---cchhhhhcccccccceeeeeeccCCCCcceeeeccc-ceeeeEecC--CCCc---eeeecccCCC
Confidence 2 2211 111 111111 14566789999654 55554431 223455544 3443 5667777788
Q ss_pred ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCc
Q 039497 486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV 565 (642)
Q Consensus 486 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~ 565 (642)
++++.|.+||++|+..+.... .|..||+............+.++ .+ .-...-..|+|++|+-...++
T Consensus 253 vThL~~~edGn~lfsGaRk~d-------kIl~WDiR~~~~pv~~L~rhv~~-TN---QRI~FDld~~~~~LasG~tdG-- 319 (406)
T KOG2919|consen 253 VTHLQWCEDGNKLFSGARKDD-------KILCWDIRYSRDPVYALERHVGD-TN---QRILFDLDPKGEILASGDTDG-- 319 (406)
T ss_pred eeeEEeccCcCeecccccCCC-------eEEEEeehhccchhhhhhhhccC-cc---ceEEEecCCCCceeeccCCCc--
Confidence 999999999998877666443 49999986543221111111110 00 111234478899887766654
Q ss_pred ccCCCCCCCCCCCCCcEEEEEcCC-Cc
Q 039497 566 MAEPVSWPNQFQPYGDLYVVKLDG-SG 591 (642)
Q Consensus 566 ~~~~~~~~~~~~~~~~l~~~~~~~-~~ 591 (642)
.|.+||+.+ +.
T Consensus 320 ---------------~V~vwdlk~~gn 331 (406)
T KOG2919|consen 320 ---------------SVRVWDLKDLGN 331 (406)
T ss_pred ---------------cEEEEecCCCCC
Confidence 677888876 44
No 159
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.72 E-value=4.3e-06 Score=77.93 Aligned_cols=271 Identities=17% Similarity=0.176 Sum_probs=161.4
Q ss_pred cccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCce
Q 039497 245 CFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKE 324 (642)
Q Consensus 245 ~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (642)
+....||+-|.+||+.-.+ ..+-+||+.+...+.. +.+...
T Consensus 26 a~~~~Fs~~G~~lAvGc~n-----G~vvI~D~~T~~iar~---------------------------------lsaH~~- 66 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCAN-----GRVVIYDFDTFRIARM---------------------------------LSAHVR- 66 (405)
T ss_pred cceEEeccCcceeeeeccC-----CcEEEEEccccchhhh---------------------------------hhcccc-
Confidence 6678899999999984443 3888888844331111 001111
Q ss_pred eEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCe-eEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeE
Q 039497 325 LRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR-WTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATV 403 (642)
Q Consensus 325 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 403 (642)
....++||+||++|+..+. .+.+-++|+-.+.. .++..+..+....|.|-.+..+++..- +...
T Consensus 67 ------pi~sl~WS~dgr~LltsS~---D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~------~~sp 131 (405)
T KOG1273|consen 67 ------PITSLCWSRDGRKLLTSSR---DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIM------EESP 131 (405)
T ss_pred ------ceeEEEecCCCCEeeeecC---CceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEe------cCCc
Confidence 1135699999998887654 47788889876654 344447788899999966555544421 2234
Q ss_pred EEEEEEeecCCCCCCCCCccccceEEccccCCC-C---ccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC
Q 039497 404 QIARVSFQLDPSDDNNREEIPCDVKILTKEETG-N---NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL 479 (642)
Q Consensus 404 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~---~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l 479 (642)
.+..+.. . +.+.|.....+ . ..+..|.+-|++|+... +++.|.+++..+-+.+. .-.+
T Consensus 132 ~vi~~s~---------~-----~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGt---sKGkllv~~a~t~e~va-s~ri 193 (405)
T KOG1273|consen 132 VVIDFSD---------P-----KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGT---SKGKLLVYDAETLECVA-SFRI 193 (405)
T ss_pred EEEEecC---------C-----ceeeccCCCccccccccccccccCCCCEEEEec---CcceEEEEecchheeee-eeee
Confidence 4444432 1 33444333211 1 22235889999998765 34478888877655310 0112
Q ss_pred CCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC-------CceEEeeec-CCCCCCCcccccccceEEcC
Q 039497 480 TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG-------SGLRRIHVA-GPEGSGDVDRERINHVCFSA 551 (642)
Q Consensus 480 ~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~-------~~~~~l~~~-~~~~~~~~~~~~~~~~~~S~ 551 (642)
+. ...+.++.++-.|+.|++...+.. |..|++.. ++.+...+. +..+ +..-....||.
T Consensus 194 ts-~~~IK~I~~s~~g~~liiNtsDRv--------IR~ye~~di~~~~r~~e~e~~~K~qDvVN-----k~~Wk~ccfs~ 259 (405)
T KOG1273|consen 194 TS-VQAIKQIIVSRKGRFLIINTSDRV--------IRTYEISDIDDEGRDGEVEPEHKLQDVVN-----KLQWKKCCFSG 259 (405)
T ss_pred ch-heeeeEEEEeccCcEEEEecCCce--------EEEEehhhhcccCccCCcChhHHHHHHHh-----hhhhhheeecC
Confidence 22 245677899999999999887653 66666531 122111110 0000 00113578999
Q ss_pred CCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCC-CC-CCCCcEEecCCceEEee
Q 039497 552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN-GY-ENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 552 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~-~~-~~~~~~~s~dg~~~~~~ 617 (642)
||.+++..+... -.||.|....|.+.++..+ .+ ...++.|+|=.-.+++.
T Consensus 260 dgeYv~a~s~~a----------------HaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si 311 (405)
T KOG1273|consen 260 DGEYVCAGSARA----------------HALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI 311 (405)
T ss_pred CccEEEeccccc----------------eeEEEEecCCcceeeeecCCchhheeecccccceeeeeec
Confidence 999998877432 2899999887776666543 32 34577788877666665
No 160
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=2.4e-07 Score=89.65 Aligned_cols=183 Identities=14% Similarity=0.030 Sum_probs=119.1
Q ss_pred eeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeC
Q 039497 376 FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSG 455 (642)
Q Consensus 376 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~ 455 (642)
..++|++||..|+... .++.+++|.... . . .......+. ..+..+.|||||+.|++.+.
T Consensus 148 k~vaf~~~gs~latgg-------~dg~lRv~~~Ps--~------~-----t~l~e~~~~-~eV~DL~FS~dgk~lasig~ 206 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGG-------TDGTLRVWEWPS--M------L-----TILEEIAHH-AEVKDLDFSPDGKFLASIGA 206 (398)
T ss_pred eEEEEcCCCCEeeecc-------ccceEEEEecCc--c------h-----hhhhhHhhc-CccccceeCCCCcEEEEecC
Confidence 5789999999998875 378999999654 1 1 233333444 67889999999999999874
Q ss_pred CCCceeEEEEECCCCccccceeeCCCC--CCcccceeEecCC---CEEEEEecCCCCCCCCceeEEEEeCCCC----ceE
Q 039497 456 RSGHKNLFVLDAVNGEFNGDIRQLTDG--PWIDTMPSWSPKG---DLIAFSSNRHNPDNVEAFSLYVIKPDGS----GLR 526 (642)
Q Consensus 456 ~~g~~~l~~~d~~~g~~~~~~~~l~~~--~~~~~~~~~spdG---~~l~~~~~~~~~~~~~~~~l~~~d~~~~----~~~ 526 (642)
. ...+|++++|.. +..++.. ++....+.|+.|+ .+.+++..... +...++...+-.+ +.+
T Consensus 207 d----~~~VW~~~~g~~---~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~----~~v~~~~~~~w~~~~~l~~~ 275 (398)
T KOG0771|consen 207 D----SARVWSVNTGAA---LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPG----GGVRLCDISLWSGSNFLRLR 275 (398)
T ss_pred C----ceEEEEeccCch---hhhcCCcccchhhhhceecccCCCceEEEEEecCCC----CceeEEEeeeeccccccchh
Confidence 3 677888888865 5555532 2345667898887 54555544432 2222222222112 122
Q ss_pred EeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccC--CCCCCCC
Q 039497 527 RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW--NGYENGT 604 (642)
Q Consensus 527 ~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~--~~~~~~~ 604 (642)
+... ... .+..+..|+||++++..+.++ .+-+++...-+..++.. |...++.
T Consensus 276 ~~~~-~~~--------siSsl~VS~dGkf~AlGT~dG-----------------sVai~~~~~lq~~~~vk~aH~~~VT~ 329 (398)
T KOG0771|consen 276 KKIK-RFK--------SISSLAVSDDGKFLALGTMDG-----------------SVAIYDAKSLQRLQYVKEAHLGFVTG 329 (398)
T ss_pred hhhh-ccC--------cceeEEEcCCCcEEEEeccCC-----------------cEEEEEeceeeeeEeehhhheeeeee
Confidence 2211 111 467899999999999998865 56666655544444432 5678899
Q ss_pred cEEecCCceEEe
Q 039497 605 PAWHPGNQLDLG 616 (642)
Q Consensus 605 ~~~s~dg~~~~~ 616 (642)
+.|+||.++.++
T Consensus 330 ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 330 LTFSPDSRYLAS 341 (398)
T ss_pred EEEcCCcCcccc
Confidence 999999998876
No 161
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.70 E-value=6.1e-06 Score=73.83 Aligned_cols=218 Identities=14% Similarity=0.094 Sum_probs=134.4
Q ss_pred EEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecC
Q 039497 336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD 413 (642)
Q Consensus 336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 413 (642)
+.+.|..+++-. .+...++++|+.+++..+-.. .+.+..+.|..+...++-.+. +..+++|+-.. .
T Consensus 66 ~~s~Dnskf~s~---GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sgsf-------D~s~r~wDCRS--~ 133 (307)
T KOG0316|consen 66 ALSSDNSKFASC---GGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSF-------DSSVRLWDCRS--R 133 (307)
T ss_pred cccccccccccC---CCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccc-------cceeEEEEccc--C
Confidence 456666666553 456789999999988654433 566888999877766655553 78999999866 2
Q ss_pred CCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEec
Q 039497 414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493 (642)
Q Consensus 414 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~sp 493 (642)
.- + .++.|.... ..+..+.++ +..|+..+ -+| .+..+|+..|+. ........++...||+
T Consensus 134 -----s~-e---PiQildea~-D~V~Si~v~--~heIvaGS-~DG--tvRtydiR~G~l-----~sDy~g~pit~vs~s~ 193 (307)
T KOG0316|consen 134 -----SF-E---PIQILDEAK-DGVSSIDVA--EHEIVAGS-VDG--TVRTYDIRKGTL-----SSDYFGHPITSVSFSK 193 (307)
T ss_pred -----CC-C---ccchhhhhc-CceeEEEec--ccEEEeec-cCC--cEEEEEeeccee-----ehhhcCCcceeEEecC
Confidence 11 1 334444333 445555554 33444443 334 678888887763 2222334577889999
Q ss_pred CCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCC
Q 039497 494 KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP 573 (642)
Q Consensus 494 dG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~ 573 (642)
||+.++..+.+.. |.+.|-++|++-.... ++.+. +.-.+..++..-..+ +...+.+
T Consensus 194 d~nc~La~~l~st--------lrLlDk~tGklL~sYk-Ghkn~-----eykldc~l~qsdthV-~sgSEDG--------- 249 (307)
T KOG0316|consen 194 DGNCSLASSLDST--------LRLLDKETGKLLKSYK-GHKNM-----EYKLDCCLNQSDTHV-FSGSEDG--------- 249 (307)
T ss_pred CCCEEEEeeccce--------eeecccchhHHHHHhc-ccccc-----eeeeeeeecccceeE-EeccCCc---------
Confidence 9999888887765 8999998887644333 22110 011234555444444 4443332
Q ss_pred CCCCCCCcEEEEEcCCC-ceeeccCCCCC-CCCcEEecCCceEEe
Q 039497 574 NQFQPYGDLYVVKLDGS-GLRRLTWNGYE-NGTPAWHPGNQLDLG 616 (642)
Q Consensus 574 ~~~~~~~~l~~~~~~~~-~~~~lt~~~~~-~~~~~~s~dg~~~~~ 616 (642)
.+|.||+... .+..+...... +.++.+.|--..|++
T Consensus 250 -------~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~ 287 (307)
T KOG0316|consen 250 -------KVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFIT 287 (307)
T ss_pred -------eEEEEEeccceeeeeeccCCceeEEeeecccCccceeE
Confidence 8999997654 35555555443 578889988755543
No 162
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.70 E-value=2.2e-07 Score=89.43 Aligned_cols=263 Identities=13% Similarity=0.040 Sum_probs=148.7
Q ss_pred CCccccceeecCCcEEEEEEeccCCceeeEEEEEee----------cCCCCcccCCeecCCCCEEEEEEeecCCCCCCcc
Q 039497 242 GVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT----------LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQST 311 (642)
Q Consensus 242 ~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~----------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~ 311 (642)
...+....|-++...|+. ++....|.+|++. .+..+.+....+-++++++.-...++. .
T Consensus 175 ~gev~~v~~l~~sdtlat-----gg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~------~ 243 (459)
T KOG0288|consen 175 EGEVHDVEFLRNSDTLAT-----GGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKN------L 243 (459)
T ss_pred ccccceeEEccCcchhhh-----cchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCc------e
Confidence 334555555555455555 3344467777772 233445666777788887666544443 2
Q ss_pred cceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEe-ecCCceeeeeecCCCEEEEE
Q 039497 312 IPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI-KDRTAFYNSWSPTEKHVIYT 390 (642)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~~~~~spdg~~l~~~ 390 (642)
.+|-+.--....++....-......|.....+++-. .....|-.+|+.......-. ......++.-+ ...++.
T Consensus 244 r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsg---s~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~---~~~~~S 317 (459)
T KOG0288|consen 244 RLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSG---SADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS---ISDVIS 317 (459)
T ss_pred eeeeccchhhhhhhcccccceeeehhhccccceeec---cccchhhhhhhhhhheeccccccccccceEec---ceeeee
Confidence 233222111111111100111122333333332221 22345666666654432221 13334444443 223333
Q ss_pred EcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCC
Q 039497 391 STGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG 470 (642)
Q Consensus 391 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g 470 (642)
.. .+.++++|++.. . . ....+.. . +.+..+..++||..|...+.++ .|-++|+.+.
T Consensus 318 gH------~DkkvRfwD~Rs--~------~-----~~~sv~~-g-g~vtSl~ls~~g~~lLsssRDd---tl~viDlRt~ 373 (459)
T KOG0288|consen 318 GH------FDKKVRFWDIRS--A------D-----KTRSVPL-G-GRVTSLDLSMDGLELLSSSRDD---TLKVIDLRTK 373 (459)
T ss_pred cc------cccceEEEeccC--C------c-----eeeEeec-C-cceeeEeeccCCeEEeeecCCC---ceeeeecccc
Confidence 32 367799999866 1 1 2333333 3 5888999999999988765333 6888898877
Q ss_pred ccccceeeC-CCC----CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCccccccc
Q 039497 471 EFNGDIRQL-TDG----PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERIN 545 (642)
Q Consensus 471 ~~~~~~~~l-~~~----~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 545 (642)
+. .+. ... ........|||||.|++..+.++. ||+|++.+++.+.+....... ..+.
T Consensus 374 eI----~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs--------v~iW~v~tgKlE~~l~~s~s~------~aI~ 435 (459)
T KOG0288|consen 374 EI----RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS--------VYIWSVFTGKLEKVLSLSTSN------AAIT 435 (459)
T ss_pred cE----EEEeeccccccccccceeEECCCCceeeeccCCCc--------EEEEEccCceEEEEeccCCCC------cceE
Confidence 64 443 221 123466799999999999888775 999999999988776543221 0367
Q ss_pred ceEEcCCCCEEEEEEecC
Q 039497 546 HVCFSADGEWLLFTANLG 563 (642)
Q Consensus 546 ~~~~S~Dg~~l~~~~~~~ 563 (642)
.++|+|.|+.|+..+.+.
T Consensus 436 s~~W~~sG~~Llsadk~~ 453 (459)
T KOG0288|consen 436 SLSWNPSGSGLLSADKQK 453 (459)
T ss_pred EEEEcCCCchhhcccCCc
Confidence 899999999998776543
No 163
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.69 E-value=9e-06 Score=93.80 Aligned_cols=234 Identities=12% Similarity=0.093 Sum_probs=137.1
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeec---------------CCceeeeeecCCCEEEEEEcCCCccc
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD---------------RTAFYNSWSPTEKHVIYTSTGPIFQS 398 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~---------------~~~~~~~~spdg~~l~~~~~~~~~~~ 398 (642)
.+++++++..|++.. .+...|.+++.++.....+... .....++++++++.|+++..
T Consensus 572 gvavd~~~g~lyVaD--s~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt------ 643 (1057)
T PLN02919 572 KLAIDLLNNRLFISD--SNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADT------ 643 (1057)
T ss_pred eEEEECCCCeEEEEE--CCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeC------
Confidence 356777666565544 4567888999877654333220 12467789999888877763
Q ss_pred CCCeEEEEEEEeecCCCCCCCCCccccceEEcccc----------------CCCCccCcEECCCCCeEEEEeCCCCceeE
Q 039497 399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE----------------ETGNNAFPSCSPDGKFLVFRSGRSGHKNL 462 (642)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------------~~~~~~~~~~SpDg~~l~~~~~~~g~~~l 462 (642)
....++.++... + ....+... .......++++|++..|+++.. +..+|
T Consensus 644 ~n~~Ir~id~~~---------~-----~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~--~~~~I 707 (1057)
T PLN02919 644 ENHALREIDFVN---------E-----TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA--GQHQI 707 (1057)
T ss_pred CCceEEEEecCC---------C-----EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC--CCCeE
Confidence 234444444322 1 22222110 0012345789997777776654 44589
Q ss_pred EEEECCCCccccceeeCCCC---------------CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEE
Q 039497 463 FVLDAVNGEFNGDIRQLTDG---------------PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR 527 (642)
Q Consensus 463 ~~~d~~~g~~~~~~~~l~~~---------------~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 527 (642)
++++..+|.. ..+... -.....++++|||++|+++.... ..|.++|++++....
T Consensus 708 ~v~d~~~g~v----~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n-------~~Irv~D~~tg~~~~ 776 (1057)
T PLN02919 708 WEYNISDGVT----RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES-------SSIRALDLKTGGSRL 776 (1057)
T ss_pred EEEECCCCeE----EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC-------CeEEEEECCCCcEEE
Confidence 9999887753 322110 01224578999999888887654 349999998776543
Q ss_pred eeecCC------------CCC-CCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceee
Q 039497 528 IHVAGP------------EGS-GDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR 594 (642)
Q Consensus 528 l~~~~~------------~~~-~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 594 (642)
+..... .+. .......+..+++++||+ ||++.... ..|.+++.+++.+..
T Consensus 777 ~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N----------------~rIrviD~~tg~v~t 839 (1057)
T PLN02919 777 LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYN----------------HKIKKLDPATKRVTT 839 (1057)
T ss_pred EEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCC----------------CEEEEEECCCCeEEE
Confidence 321000 000 000011345788999997 55544332 289999998887665
Q ss_pred ccCCC--------------CCCCCcEEecCCceEEeecC
Q 039497 595 LTWNG--------------YENGTPAWHPGNQLDLGKLR 619 (642)
Q Consensus 595 lt~~~--------------~~~~~~~~s~dg~~~~~~~~ 619 (642)
+...+ .....+++++||++|++...
T Consensus 840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 840 LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence 55322 12356799999998887643
No 164
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.68 E-value=3.1e-06 Score=83.43 Aligned_cols=261 Identities=12% Similarity=0.087 Sum_probs=162.4
Q ss_pred ccccceeecCCc-EEEEEEeccCCceeeEEEEEeecC--------CCCcccCCeecCCCCEEEEEEeecCCCCCCcccce
Q 039497 244 HCFTPAAFHDGK-RLAVATRRKNRNFRHIEIYDLTLN--------PNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPH 314 (642)
Q Consensus 244 ~~~~~~~SpdG~-~l~~~~~~~~~~~~~i~~~d~~~~--------~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~ 314 (642)
.+..+.|||.-- .++++.. ..+.+|+..+. .........+-.||+.++..-..|-. .
T Consensus 28 ~vssl~fsp~~P~d~aVt~S------~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V--------~ 93 (487)
T KOG0310|consen 28 SVSSLCFSPKHPYDFAVTSS------VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHV--------K 93 (487)
T ss_pred cceeEecCCCCCCceEEecc------cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcE--------E
Confidence 466677777332 2444322 15667766211 12223455677888877765333321 1
Q ss_pred EeeccCC--CceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEE
Q 039497 315 LEPVASP--VKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIY 389 (642)
Q Consensus 315 ~~~~~~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~ 389 (642)
+...+.. ...+...+.......|+|+++.++.....+ ..+.++|+++... ++.. ...+....|+|-...+++
T Consensus 94 vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd--~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivv 170 (487)
T KOG0310|consen 94 VFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDD--KVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVV 170 (487)
T ss_pred EeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCC--ceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEE
Confidence 1112221 111111122223457899888776655433 3445556666664 4332 567888999998888877
Q ss_pred EEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC
Q 039497 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN 469 (642)
Q Consensus 390 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~ 469 (642)
+.. =++.+++|+... . +. ....+..+ ..+..+-+-|.|..|+.++ ...+-+||+.+
T Consensus 171 tGs------YDg~vrl~DtR~--~-----~~-----~v~elnhg--~pVe~vl~lpsgs~iasAg----Gn~vkVWDl~~ 226 (487)
T KOG0310|consen 171 TGS------YDGKVRLWDTRS--L-----TS-----RVVELNHG--CPVESVLALPSGSLIASAG----GNSVKVWDLTT 226 (487)
T ss_pred ecC------CCceEEEEEecc--C-----Cc-----eeEEecCC--CceeeEEEcCCCCEEEEcC----CCeEEEEEecC
Confidence 763 278999999977 2 11 33444333 4677788899998888664 35899999986
Q ss_pred CccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEE
Q 039497 470 GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCF 549 (642)
Q Consensus 470 g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 549 (642)
|.. .+....++.-.+++..+..|+..|+-.+-++. +.++|. ...+.+......+ ++.+++.
T Consensus 227 G~q--ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~--------VKVfd~--t~~Kvv~s~~~~~-------pvLsiav 287 (487)
T KOG0310|consen 227 GGQ--LLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH--------VKVFDT--TNYKVVHSWKYPG-------PVLSIAV 287 (487)
T ss_pred Cce--ehhhhhcccceEEEEEeecCCceEeecccccc--------eEEEEc--cceEEEEeeeccc-------ceeeEEe
Confidence 652 02333345567888999999999988887764 788884 4566666656666 7889999
Q ss_pred cCCCCEEEEEEecCC
Q 039497 550 SADGEWLLFTANLGA 564 (642)
Q Consensus 550 S~Dg~~l~~~~~~~~ 564 (642)
|||++.++..-.++.
T Consensus 288 s~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 288 SPDDQTVVIGMSNGL 302 (487)
T ss_pred cCCCceEEEecccce
Confidence 999999998876654
No 165
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.67 E-value=1.9e-05 Score=76.37 Aligned_cols=186 Identities=23% Similarity=0.285 Sum_probs=110.3
Q ss_pred EEc-CCCCEEEEEecCCCceeEEEEECCCCCeeEEeec-------CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497 336 SFS-PDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD-------RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR 407 (642)
Q Consensus 336 ~~s-pdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~-------~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~ 407 (642)
.+. ++|+ +++... ..+.++|.++++.+.+... .....+++.|+|+ |+++............-.+|.
T Consensus 46 ~~~~~~g~-l~v~~~----~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 46 AFDRPDGR-LYVADS----GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEECTTSE-EEEEET----TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEE
T ss_pred EEEccCCE-EEEEEc----CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEE
Confidence 455 5654 555432 4556669888877666551 2355789999999 666654321111111167888
Q ss_pred EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC--CCccccceee---CCCC
Q 039497 408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV--NGEFNGDIRQ---LTDG 482 (642)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~--~g~~~~~~~~---l~~~ 482 (642)
++. .+ +...+...- .....++|+|||+.|+++.... ..||+++++ +++. ...+. +...
T Consensus 120 ~~~--------~~-----~~~~~~~~~-~~pNGi~~s~dg~~lyv~ds~~--~~i~~~~~~~~~~~~-~~~~~~~~~~~~ 182 (246)
T PF08450_consen 120 IDP--------DG-----KVTVVADGL-GFPNGIAFSPDGKTLYVADSFN--GRIWRFDLDADGGEL-SNRRVFIDFPGG 182 (246)
T ss_dssp EET--------TS-----EEEEEEEEE-SSEEEEEEETTSSEEEEEETTT--TEEEEEEEETTTCCE-EEEEEEEE-SSS
T ss_pred ECC--------CC-----eEEEEecCc-ccccceEECCcchheeeccccc--ceeEEEeccccccce-eeeeeEEEcCCC
Confidence 877 33 444444333 4566799999999998877643 468888885 3311 10122 2222
Q ss_pred CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEE-cCCCCEEEEEEe
Q 039497 483 PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCF-SADGEWLLFTAN 561 (642)
Q Consensus 483 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-S~Dg~~l~~~~~ 561 (642)
.+....+++.++|+ |+.+.... ..|++++.++.....+... .. .+..++| -+|.+.|++++.
T Consensus 183 ~g~pDG~~vD~~G~-l~va~~~~-------~~I~~~~p~G~~~~~i~~p-~~--------~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 183 PGYPDGLAVDSDGN-LWVADWGG-------GRIVVFDPDGKLLREIELP-VP--------RPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp SCEEEEEEEBTTS--EEEEEETT-------TEEEEEETTSCEEEEEE-S-SS--------SEEEEEEESTTSSEEEEEEB
T ss_pred CcCCCcceEcCCCC-EEEEEcCC-------CEEEEECCCccEEEEEcCC-CC--------CEEEEEEECCCCCEEEEEeC
Confidence 22345679999997 45544332 2499999996555555543 11 4678999 578899988864
No 166
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.67 E-value=1.6e-07 Score=84.45 Aligned_cols=188 Identities=9% Similarity=0.019 Sum_probs=130.4
Q ss_pred cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEE
Q 039497 372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451 (642)
Q Consensus 372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~ 451 (642)
...+..++|+.|.++|+.... ..-+++++++.+ .. .++.+..+. +.+..+.|-...+.|+
T Consensus 100 khivk~~af~~ds~~lltgg~-------ekllrvfdln~p-------~A-----pp~E~~ght-g~Ir~v~wc~eD~~iL 159 (334)
T KOG0278|consen 100 KHIVKAVAFSQDSNYLLTGGQ-------EKLLRVFDLNRP-------KA-----PPKEISGHT-GGIRTVLWCHEDKCIL 159 (334)
T ss_pred hheeeeEEecccchhhhccch-------HHHhhhhhccCC-------CC-----CchhhcCCC-CcceeEEEeccCceEE
Confidence 566788999999999987654 445677777651 11 566667776 7777777776666776
Q ss_pred EEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA 531 (642)
Q Consensus 452 ~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 531 (642)
-.+ ....|.+||..+|+. +..|. .+..+.+...|+||++|..+.... |..||.++=. .|...
T Consensus 160 SSa---dd~tVRLWD~rTgt~---v~sL~-~~s~VtSlEvs~dG~ilTia~gss---------V~Fwdaksf~--~lKs~ 221 (334)
T KOG0278|consen 160 SSA---DDKTVRLWDHRTGTE---VQSLE-FNSPVTSLEVSQDGRILTIAYGSS---------VKFWDAKSFG--LLKSY 221 (334)
T ss_pred eec---cCCceEEEEeccCcE---EEEEe-cCCCCcceeeccCCCEEEEecCce---------eEEecccccc--ceeec
Confidence 554 334789999999986 44444 335678899999999877766554 8888876532 33322
Q ss_pred CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc--CCCCCCCCcEEec
Q 039497 532 GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT--WNGYENGTPAWHP 609 (642)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt--~~~~~~~~~~~s~ 609 (642)
...- .+.+.+++|+...++....+ ..+|.+|.++++-.... .+-+.+..+.|||
T Consensus 222 k~P~-------nV~SASL~P~k~~fVaGged-----------------~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP 277 (334)
T KOG0278|consen 222 KMPC-------NVESASLHPKKEFFVAGGED-----------------FKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP 277 (334)
T ss_pred cCcc-------ccccccccCCCceEEecCcc-----------------eEEEEEeccCCceeeecccCCCCceEEEEECC
Confidence 2222 56788999998544433322 27899999888755543 3446678999999
Q ss_pred CCceEEeecCCC
Q 039497 610 GNQLDLGKLRLE 621 (642)
Q Consensus 610 dg~~~~~~~~~~ 621 (642)
||+.+++..+.|
T Consensus 278 dGE~yAsGSEDG 289 (334)
T KOG0278|consen 278 DGELYASGSEDG 289 (334)
T ss_pred CCceeeccCCCc
Confidence 999999887766
No 167
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.66 E-value=5.3e-06 Score=85.37 Aligned_cols=230 Identities=10% Similarity=0.097 Sum_probs=144.0
Q ss_pred CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecC--CCEEEEEEcCCCcccCCCeEEEE
Q 039497 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPT--EKHVIYTSTGPIFQSERATVQIA 406 (642)
Q Consensus 331 ~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~l~ 406 (642)
..+.+..||+|+.|+-. +..++|.++++..-+...... ...+..+.+|-- +++|+... ..+.-++++
T Consensus 461 G~R~~~vSp~gqhLAsG---Dr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASa------srdRlIHV~ 531 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASG---DRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASA------SRDRLIHVY 531 (1080)
T ss_pred ceEEEEECCCcceeccc---CccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhc------cCCceEEEE
Confidence 33567899999998874 345788888887655332222 445666666542 33343332 125677888
Q ss_pred EEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCC--CeEEEEeCCCCceeEEEEECCCCccccceeeCCCC--
Q 039497 407 RVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG--KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-- 482 (642)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg--~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~-- 482 (642)
++..+.+ ..+.|..+. ..+..+.|--.| .+++-.. ..+...|+..-+.+. ...++.+
T Consensus 532 Dv~rny~------------l~qtld~HS-ssITsvKFa~~gln~~MiscG--ADksimFr~~qk~~~----g~~f~r~t~ 592 (1080)
T KOG1408|consen 532 DVKRNYD------------LVQTLDGHS-SSITSVKFACNGLNRKMISCG--ADKSIMFRVNQKASS----GRLFPRHTQ 592 (1080)
T ss_pred ecccccc------------hhhhhcccc-cceeEEEEeecCCceEEEecc--CchhhheehhccccC----ceecccccc
Confidence 8865212 344455544 556666666555 3332221 112233333332222 1222221
Q ss_pred ---CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC--CCCCCCcccccccceEEcCCCCEEE
Q 039497 483 ---PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG--PEGSGDVDRERINHVCFSADGEWLL 557 (642)
Q Consensus 483 ---~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~S~Dg~~l~ 557 (642)
..........|..++++....+.+ |.++++..++.++..+.. .++ ....+...|.|.+|+
T Consensus 593 t~~ktTlYDm~Vdp~~k~v~t~cQDrn--------irif~i~sgKq~k~FKgs~~~eG-------~lIKv~lDPSgiY~a 657 (1080)
T KOG1408|consen 593 TLSKTTLYDMAVDPTSKLVVTVCQDRN--------IRIFDIESGKQVKSFKGSRDHEG-------DLIKVILDPSGIYLA 657 (1080)
T ss_pred ccccceEEEeeeCCCcceEEEEecccc--------eEEEeccccceeeeecccccCCC-------ceEEEEECCCccEEE
Confidence 233456678899999988887765 999999999888776532 223 345677899999988
Q ss_pred EEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCceEEeecCC
Q 039497 558 FTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQLDLGKLRL 620 (642)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~~~~~~~~~ 620 (642)
....+. .|-.+|.-+++ ..+++.+...+..+.|++|=++|++....
T Consensus 658 tScsdk-----------------tl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgD 704 (1080)
T KOG1408|consen 658 TSCSDK-----------------TLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGD 704 (1080)
T ss_pred EeecCC-----------------ceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCC
Confidence 887664 67788887776 67888888888899999999988875433
No 168
>PRK10115 protease 2; Provisional
Probab=98.66 E-value=1.1e-05 Score=88.98 Aligned_cols=218 Identities=13% Similarity=0.175 Sum_probs=129.2
Q ss_pred ccEEcCCCCEEEEEecCC--CceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 334 FPSFSPDGGLIVFNHDFE--LNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~--~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
...|||||++|+|..+.. ...+|+++++.++.............+.|++|++.|+|+.... .......+|..+.
T Consensus 131 ~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~---~~~~~~~v~~h~l- 206 (686)
T PRK10115 131 GMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHP---VTLLPYQVWRHTI- 206 (686)
T ss_pred EEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecC---CCCCCCEEEEEEC-
Confidence 457899999999977643 3467999999887632211122225699999999999998631 0012245666555
Q ss_pred cCCCCCCCCCccccceEEccccCCCCcc-CcEECCCCCeEEEEeCCCCceeEEEEECC--CCccccceeeCCCCCCcccc
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNA-FPSCSPDGKFLVFRSGRSGHKNLFVLDAV--NGEFNGDIRQLTDGPWIDTM 488 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~SpDg~~l~~~~~~~g~~~l~~~d~~--~g~~~~~~~~l~~~~~~~~~ 488 (642)
. ++.+ ....+......... ....+.|++++++.+......++++++.. +++. ..+........
T Consensus 207 -g-----t~~~---~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~- 272 (686)
T PRK10115 207 -G-----TPAS---QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEP----FVFLPRRKDHE- 272 (686)
T ss_pred -C-----CChh---HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCc----eEEEECCCCCE-
Confidence 1 1110 12233322212222 23445599998877766556688888842 3442 32222222111
Q ss_pred eeEecCCCEEEEEecCCCCCCCCceeEEEEeCC-CCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497 489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD-GSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA 567 (642)
Q Consensus 489 ~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~ 567 (642)
......+..|++.++.+. ....|+.+++. .++.+.+....... .+..+.++ +++|++...+.+..
T Consensus 273 ~~~~~~~~~ly~~tn~~~----~~~~l~~~~~~~~~~~~~l~~~~~~~-------~i~~~~~~--~~~l~~~~~~~g~~- 338 (686)
T PRK10115 273 YSLDHYQHRFYLRSNRHG----KNFGLYRTRVRDEQQWEELIPPRENI-------MLEGFTLF--TDWLVVEERQRGLT- 338 (686)
T ss_pred EEEEeCCCEEEEEEcCCC----CCceEEEecCCCcccCeEEECCCCCC-------EEEEEEEE--CCEEEEEEEeCCEE-
Confidence 222234567777776543 45678888887 45556665532222 34455555 66888888877654
Q ss_pred CCCCCCCCCCCCCcEEEEEcCCCceeecc
Q 039497 568 EPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596 (642)
Q Consensus 568 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lt 596 (642)
.|+.+++.++.+..|+
T Consensus 339 -------------~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 339 -------------SLRQINRKTREVIGIA 354 (686)
T ss_pred -------------EEEEEcCCCCceEEec
Confidence 8999998777777766
No 169
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=98.63 E-value=2.1e-05 Score=69.78 Aligned_cols=236 Identities=15% Similarity=0.177 Sum_probs=135.7
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEE----CCCCC-----e-eEEee-----cCCceeeeeecCCCEEEEEEcCCCcc
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAK----SDGSK-----R-WTLIK-----DRTAFYNSWSPTEKHVIYTSTGPIFQ 397 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d----~~~~~-----~-~~l~~-----~~~~~~~~~spdg~~l~~~~~~~~~~ 397 (642)
+...|.|.|...+..+. ...-.|..+. +..+. . ..+.. .+.+...+|||+|+.|+..++
T Consensus 36 rav~fhp~g~lyavgsn-skt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn----- 109 (350)
T KOG0641|consen 36 RAVAFHPAGGLYAVGSN-SKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN----- 109 (350)
T ss_pred eeEEecCCCceEEeccC-CceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC-----
Confidence 45689999986555432 3333443332 21111 1 11111 567889999999998887764
Q ss_pred cCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCC---CCeEEEEeCCCCceeEEEEECCCCcccc
Q 039497 398 SERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD---GKFLVFRSGRSGHKNLFVLDAVNGEFNG 474 (642)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD---g~~l~~~~~~~g~~~l~~~d~~~g~~~~ 474 (642)
+..+++..++. + .+++.+....+.-+. +.+..++|..| |..|+ ++...|+-.||+-|-.+|+.
T Consensus 110 --dk~ik~l~fn~--d------t~~~~g~dle~nmhd-gtirdl~fld~~~s~~~il-~s~gagdc~iy~tdc~~g~~-- 175 (350)
T KOG0641|consen 110 --DKTIKVLPFNA--D------TCNATGHDLEFNMHD-GTIRDLAFLDDPESGGAIL-ASAGAGDCKIYITDCGRGQG-- 175 (350)
T ss_pred --CceEEEEeccc--c------cccccCcceeeeecC-CceeeeEEecCCCcCceEE-EecCCCcceEEEeecCCCCc--
Confidence 55666655544 1 111111223333333 55666666543 22333 34445677999999998886
Q ss_pred ceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-CCCCCCcccccccceEEcCCC
Q 039497 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEGSGDVDRERINHVCFSADG 553 (642)
Q Consensus 475 ~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~S~Dg 553 (642)
...+..+.+.+-. -++-+|-.++-.+.+. .|..||+.-.......... ..+ ...-..+..++..|.|
T Consensus 176 -~~a~sghtghila-lyswn~~m~~sgsqdk--------tirfwdlrv~~~v~~l~~~~~~~--glessavaav~vdpsg 243 (350)
T KOG0641|consen 176 -FHALSGHTGHILA-LYSWNGAMFASGSQDK--------TIRFWDLRVNSCVNTLDNDFHDG--GLESSAVAAVAVDPSG 243 (350)
T ss_pred -ceeecCCcccEEE-EEEecCcEEEccCCCc--------eEEEEeeeccceeeeccCcccCC--CcccceeEEEEECCCc
Confidence 6667666553322 2333465444444333 3788887644332222111 111 0000135678899999
Q ss_pred CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCceEEee
Q 039497 554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 554 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~~~~~~ 617 (642)
+.|+....+. ...+||+.|+. +++...+...+..+.|||..-|++++
T Consensus 244 rll~sg~~ds-----------------sc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~ 291 (350)
T KOG0641|consen 244 RLLASGHADS-----------------SCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTC 291 (350)
T ss_pred ceeeeccCCC-----------------ceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEe
Confidence 9776554432 56677888887 45566677788999999999888775
No 170
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.62 E-value=1.9e-05 Score=77.41 Aligned_cols=301 Identities=14% Similarity=0.097 Sum_probs=168.3
Q ss_pred ceeEeecCCCcceEeeCC--eEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEe
Q 039497 185 KRVIVCERGGWPTWSGDS--TIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATR 262 (642)
Q Consensus 185 ~~~l~~~~~~~~~wspdg--~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~ 262 (642)
..+++..+-...+|.|-- +++++. +..|+..+|-++.... +-......+.+...+..+.|+|...--++...
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~G-dK~G~VG~Wn~~~~~~-----d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVG-DKGGQVGLWNFGTQEK-----DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEc-cCCCcEEEEecCCCCC-----ccCceEEeccCCccccceEecCCChhheeeec
Confidence 344444344457999877 455555 7788777776642221 01134455677778888999987765555444
Q ss_pred ccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCC
Q 039497 263 RKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGG 342 (642)
Q Consensus 263 ~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 342 (642)
..| .|++.|+....- ....+-|...+.| ....++.+..
T Consensus 255 yDG----tiR~~D~~~~i~----e~v~s~~~d~~~f----------------------------------s~~d~~~e~~ 292 (498)
T KOG4328|consen 255 YDG----TIRLQDFEGNIS----EEVLSLDTDNIWF----------------------------------SSLDFSAESR 292 (498)
T ss_pred cCc----eeeeeeecchhh----HHHhhcCccceee----------------------------------eeccccCCCc
Confidence 333 777777732210 0011111111111 1224555555
Q ss_pred EEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCC
Q 039497 343 LIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNRE 421 (642)
Q Consensus 343 ~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 421 (642)
.++|...- +.-+++....++.+...+.. ...+.++.+.|-..+++.+. ..+...+||++.. - .+
T Consensus 293 ~vl~~~~~-G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~------s~D~T~kIWD~R~--l-----~~- 357 (498)
T KOG4328|consen 293 SVLFGDNV-GNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATA------SLDQTAKIWDLRQ--L-----RG- 357 (498)
T ss_pred cEEEeecc-cceEEEEeecCCccchhhhhhhcccceeecCCCCchheeec------ccCcceeeeehhh--h-----cC-
Confidence 56665432 23345545555554333333 55789999999888877766 3478899999865 2 12
Q ss_pred ccccceE---EccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC---CCccccceeeCCCCC--Cc---cccee
Q 039497 422 EIPCDVK---ILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV---NGEFNGDIRQLTDGP--WI---DTMPS 490 (642)
Q Consensus 422 ~~~~~~~---~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~---~g~~~~~~~~l~~~~--~~---~~~~~ 490 (642)
+.. ....+. ..+....|||+|-.|+.+..++ .|-++|.. ..-. ....|.... +. .....
T Consensus 358 ----K~sp~lst~~Hr-rsV~sAyFSPs~gtl~TT~~D~---~IRv~dss~~sa~~~--p~~~I~Hn~~t~RwlT~fKA~ 427 (498)
T KOG4328|consen 358 ----KASPFLSTLPHR-RSVNSAYFSPSGGTLLTTCQDN---EIRVFDSSCISAKDE--PLGTIPHNNRTGRWLTPFKAA 427 (498)
T ss_pred ----CCCcceeccccc-ceeeeeEEcCCCCceEeeccCC---ceEEeecccccccCC--ccceeeccCcccccccchhhe
Confidence 221 112333 5677889999998877766433 67777762 1111 012222111 11 12348
Q ss_pred EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE-EeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCC
Q 039497 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR-RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEP 569 (642)
Q Consensus 491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~ 569 (642)
|.||-.+|+....... |=++|-.+++.. .+....... ......|.|=+..++..++..+
T Consensus 428 W~P~~~li~vg~~~r~--------IDv~~~~~~q~v~el~~P~~~t-------I~~vn~~HP~~~~~~aG~~s~G----- 487 (498)
T KOG4328|consen 428 WDPDYNLIVVGRYPRP--------IDVFDGNGGQMVCELHDPESST-------IPSVNEFHPMRDTLAAGGNSSG----- 487 (498)
T ss_pred eCCCccEEEEeccCcc--------eeEEcCCCCEEeeeccCccccc-------cccceeecccccceeccCCccc-----
Confidence 9999888777765432 788888777632 223222111 2234578888876776666543
Q ss_pred CCCCCCCCCCCcEEEEEcCC
Q 039497 570 VSWPNQFQPYGDLYVVKLDG 589 (642)
Q Consensus 570 ~~~~~~~~~~~~l~~~~~~~ 589 (642)
.||++...+
T Consensus 488 -----------ki~vft~k~ 496 (498)
T KOG4328|consen 488 -----------KIYVFTNKK 496 (498)
T ss_pred -----------eEEEEecCC
Confidence 788886544
No 171
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.61 E-value=3.3e-05 Score=75.82 Aligned_cols=231 Identities=19% Similarity=0.245 Sum_probs=138.5
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (642)
..|.|.++.+.|+++. -....|+.++.++++.+.............-.++..|+.+.. .+.+++.+.
T Consensus 28 EgP~w~~~~~~L~w~D--I~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~---------g~~~~~~~~-- 94 (307)
T COG3386 28 EGPVWDPDRGALLWVD--ILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEH---------GVRLLDPDT-- 94 (307)
T ss_pred cCccCcCCCCEEEEEe--CCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEcc---------ccEEEeccC--
Confidence 5779999999888876 346789999998777666655444444444444555555542 333344332
Q ss_pred CCCCCCCCCccccceEEccccC----CCCccCcEECCCCCeEEEEeCC---------CCceeEEEEECCCCccccceeeC
Q 039497 413 DPSDDNNREEIPCDVKILTKEE----TGNNAFPSCSPDGKFLVFRSGR---------SGHKNLFVLDAVNGEFNGDIRQL 479 (642)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~SpDg~~l~~~~~~---------~g~~~l~~~d~~~g~~~~~~~~l 479 (642)
++ ..+.+.... ..........|||+.. |.... .....||+++.. |.. .+.+
T Consensus 95 ------~~-----~~t~~~~~~~~~~~~r~ND~~v~pdG~~w-fgt~~~~~~~~~~~~~~G~lyr~~p~-g~~---~~l~ 158 (307)
T COG3386 95 ------GG-----KITLLAEPEDGLPLNRPNDGVVDPDGRIW-FGDMGYFDLGKSEERPTGSLYRVDPD-GGV---VRLL 158 (307)
T ss_pred ------Cc-----eeEEeccccCCCCcCCCCceeEcCCCCEE-EeCCCccccCccccCCcceEEEEcCC-CCE---EEee
Confidence 22 112222211 1234457888998654 44333 123379999985 443 3556
Q ss_pred CCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC--C---ceE-EeeecCCCCCCCcccccccceEEcCCC
Q 039497 480 TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG--S---GLR-RIHVAGPEGSGDVDRERINHVCFSADG 553 (642)
Q Consensus 480 ~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~--~---~~~-~l~~~~~~~~~~~~~~~~~~~~~S~Dg 553 (642)
..+-...+.++|||||+.||++..... .|++++++- + ..+ .+......+ .+..++...||
T Consensus 159 ~~~~~~~NGla~SpDg~tly~aDT~~~-------~i~r~~~d~~~g~~~~~~~~~~~~~~~G-------~PDG~~vDadG 224 (307)
T COG3386 159 DDDLTIPNGLAFSPDGKTLYVADTPAN-------RIHRYDLDPATGPIGGRRGFVDFDEEPG-------LPDGMAVDADG 224 (307)
T ss_pred cCcEEecCceEECCCCCEEEEEeCCCC-------eEEEEecCcccCccCCcceEEEccCCCC-------CCCceEEeCCC
Confidence 654556678999999999998887543 488888762 1 111 111111222 44567777888
Q ss_pred CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEe-cCC-ceEEeecCCCc
Q 039497 554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWH-PGN-QLDLGKLRLED 622 (642)
Q Consensus 554 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s-~dg-~~~~~~~~~~~ 622 (642)
...+ .+..++ ..|.+++.++..+.++.-.......++|- ++. .+|+++.+.++
T Consensus 225 ~lw~-~a~~~g---------------~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~~~ 279 (307)
T COG3386 225 NLWV-AAVWGG---------------GRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARSGM 279 (307)
T ss_pred CEEE-ecccCC---------------ceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCCCC
Confidence 7443 333322 17889999976666666554556788885 444 66677777664
No 172
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.61 E-value=5.1e-06 Score=79.24 Aligned_cols=180 Identities=12% Similarity=0.126 Sum_probs=115.7
Q ss_pred CEEEEEecCCCceeEEEEECCCCCee-EEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCC
Q 039497 342 GLIVFNHDFELNAGIKIAKSDGSKRW-TLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR 420 (642)
Q Consensus 342 ~~l~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 420 (642)
..++++... ....+.+++.+.+... .+.....+.++.+. -++|+++- ...++||++.. -
T Consensus 57 SLvaiV~~~-qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmN--r~RLvV~L--------ee~IyIydI~~---------M 116 (391)
T KOG2110|consen 57 SLVAIVSIK-QPRKLKVVHFKKKTTICEIFFPTSILAVRMN--RKRLVVCL--------EESIYIYDIKD---------M 116 (391)
T ss_pred ceeEEEecC-CCceEEEEEcccCceEEEEecCCceEEEEEc--cceEEEEE--------cccEEEEeccc---------c
Confidence 456666652 2356777777654432 23335666677764 45676665 34588888854 1
Q ss_pred CccccceEEcc---ccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCE
Q 039497 421 EEIPCDVKILT---KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497 (642)
Q Consensus 421 ~~~~~~~~~l~---~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~ 497 (642)
+ ....|. ... .....+++++.+.+++|-...+ ..+|+++|+.+-+. +..|..+.+.+..++|+|||..
T Consensus 117 -k---lLhTI~t~~~n~-~gl~AlS~n~~n~ylAyp~s~t-~GdV~l~d~~nl~~---v~~I~aH~~~lAalafs~~G~l 187 (391)
T KOG2110|consen 117 -K---LLHTIETTPPNP-KGLCALSPNNANCYLAYPGSTT-SGDVVLFDTINLQP---VNTINAHKGPLAALAFSPDGTL 187 (391)
T ss_pred -e---eehhhhccCCCc-cceEeeccCCCCceEEecCCCC-CceEEEEEccccee---eeEEEecCCceeEEEECCCCCE
Confidence 0 112221 122 2344455566667999987653 56899999887665 5667778888889999999999
Q ss_pred EEEEecCCCCCCCCceeEEEEeCCCCce-EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497 498 IAFSSNRHNPDNVEAFSLYVIKPDGSGL-RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA 564 (642)
Q Consensus 498 l~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~ 564 (642)
|+.++..++ -|.++.+..|+. .++...-... .+.+++||+|+++|..+++.+.
T Consensus 188 lATASeKGT-------VIRVf~v~~G~kl~eFRRG~~~~-------~IySL~Fs~ds~~L~~sS~TeT 241 (391)
T KOG2110|consen 188 LATASEKGT-------VIRVFSVPEGQKLYEFRRGTYPV-------SIYSLSFSPDSQFLAASSNTET 241 (391)
T ss_pred EEEeccCce-------EEEEEEcCCccEeeeeeCCceee-------EEEEEEECCCCCeEEEecCCCe
Confidence 999998774 366777765543 2332211111 5678999999999998887654
No 173
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=2.5e-05 Score=69.39 Aligned_cols=232 Identities=13% Similarity=0.133 Sum_probs=132.6
Q ss_pred CCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCC-----CceeEEeeeC--CCccEEcC---CCCEEEEEec
Q 039497 280 PNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASP-----VKELRMLRLN--GSFPSFSP---DGGLIVFNHD 349 (642)
Q Consensus 280 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~sp---dg~~l~~~~~ 349 (642)
+.+.++..+|||+|+.|+.-+.+.. + ...+.+.. ...+++.-.. .+.++|-. .|..| ..+.
T Consensus 88 hkgsiyc~~ws~~geliatgsndk~-------i-k~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~i-l~s~ 158 (350)
T KOG0641|consen 88 HKGSIYCTAWSPCGELIATGSNDKT-------I-KVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAI-LASA 158 (350)
T ss_pred cCccEEEEEecCccCeEEecCCCce-------E-EEEecccccccccCcceeeeecCCceeeeEEecCCCcCceE-EEec
Confidence 4566777899999998887543222 1 11222111 1122222111 13344421 22223 3333
Q ss_pred CCCceeEEEEECCCCCeeEEee--cCCcee-eeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccc
Q 039497 350 FELNAGIKIAKSDGSKRWTLIK--DRTAFY-NSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD 426 (642)
Q Consensus 350 ~~~~~~l~~~d~~~~~~~~l~~--~~~~~~-~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 426 (642)
..+.-.||+-|-..++..+... .+.+.. ..| +|-.++-. ..+..+++|++.. + - .
T Consensus 159 gagdc~iy~tdc~~g~~~~a~sghtghilalysw--n~~m~~sg-------sqdktirfwdlrv--~------~-----~ 216 (350)
T KOG0641|consen 159 GAGDCKIYITDCGRGQGFHALSGHTGHILALYSW--NGAMFASG-------SQDKTIRFWDLRV--N------S-----C 216 (350)
T ss_pred CCCcceEEEeecCCCCcceeecCCcccEEEEEEe--cCcEEEcc-------CCCceEEEEeeec--c------c-----e
Confidence 4677889998887776555443 222222 244 34433333 2478999999977 2 1 2
Q ss_pred eEEccccC------CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEE
Q 039497 427 VKILTKEE------TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500 (642)
Q Consensus 427 ~~~l~~~~------~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~ 500 (642)
...+.... ...+..+++.|.|+.|+... .+..-.++|+.+|.. ++....+...+..+.|||.-.+++.
T Consensus 217 v~~l~~~~~~~glessavaav~vdpsgrll~sg~---~dssc~lydirg~r~---iq~f~phsadir~vrfsp~a~yllt 290 (350)
T KOG0641|consen 217 VNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH---ADSSCMLYDIRGGRM---IQRFHPHSADIRCVRFSPGAHYLLT 290 (350)
T ss_pred eeeccCcccCCCcccceeEEEEECCCcceeeecc---CCCceEEEEeeCCce---eeeeCCCccceeEEEeCCCceEEEE
Confidence 33332111 02355678899998776443 334667889998886 6777788888889999999888887
Q ss_pred EecCCCCCCCCceeEEEEeCCCCceEEeee---cCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHV---AGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 501 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
.+.+.. |.+.|+.+.-..++.. ..+.. .+....|.|..-.++-++.+.
T Consensus 291 ~syd~~--------ikltdlqgdla~el~~~vv~ehkd-------k~i~~rwh~~d~sfisssadk 341 (350)
T KOG0641|consen 291 CSYDMK--------IKLTDLQGDLAHELPIMVVAEHKD-------KAIQCRWHPQDFSFISSSADK 341 (350)
T ss_pred ecccce--------EEEeecccchhhcCceEEEEeccC-------ceEEEEecCccceeeeccCcc
Confidence 776553 8999998764433321 11122 345678888765555444443
No 174
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=98.59 E-value=0.00052 Score=71.75 Aligned_cols=261 Identities=11% Similarity=0.070 Sum_probs=157.0
Q ss_pred ccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCC------CcccCCeecCCCCEEEEEEeecCCCCCCcccceEee
Q 039497 244 HCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPN------FHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEP 317 (642)
Q Consensus 244 ~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~------~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~ 317 (642)
.....++|||+++|+++....|.....+.+.|+.++.. .-....+|.+|++.++|.+.+... ....++...
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~~d~~~---rp~kv~~h~ 206 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTRLDENH---RPDKVWRHR 206 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhcccccceEEecCCCeEEEEEEcCCC---CcceEEEEe
Confidence 34456789999999999988899999999999954321 114467899999999999877663 234556666
Q ss_pred ccCCCceeE-EeeeCC-C---ccEEcCCCCEEEEEecCCCceeEEEEECCCCCe--eEEeecCCceeeeeecCCCEEEEE
Q 039497 318 VASPVKELR-MLRLNG-S---FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR--WTLIKDRTAFYNSWSPTEKHVIYT 390 (642)
Q Consensus 318 ~~~~~~~~~-~~~~~~-~---~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~spdg~~l~~~ 390 (642)
+..+...-. +..... . ...-+.+.++|+.........++++++.+.... +.+.....-.......-+..+++.
T Consensus 207 ~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d~f~i~ 286 (682)
T COG1770 207 LGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYIL 286 (682)
T ss_pred cCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCcEEEEE
Confidence 665322211 222222 1 122366677777766556778999998876554 333332211122222336677776
Q ss_pred EcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCC
Q 039497 391 STGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG 470 (642)
Q Consensus 391 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g 470 (642)
++. +..+..|+.... . ++.. ..+.+..+. ....--.++-=.++|+....+.+-..|++.+.++|
T Consensus 287 sN~-----~gknf~l~~ap~--~----~~~~----~w~~~I~h~-~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~ 350 (682)
T COG1770 287 SNA-----DGKNFKLVRAPV--S----ADKS----NWRELIPHR-EDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTG 350 (682)
T ss_pred ecC-----CCcceEEEEccC--C----CChh----cCeeeeccC-CCceeeeeeeeccEEEEEecccCCceEEEEecCCC
Confidence 653 234556665433 1 1111 334444443 33333345555678888888888999999999888
Q ss_pred ccccceeeCCCC-CCcccceeEe--cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497 471 EFNGDIRQLTDG-PWIDTMPSWS--PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA 531 (642)
Q Consensus 471 ~~~~~~~~l~~~-~~~~~~~~~s--pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 531 (642)
+. ..|.-. .........+ ++...|-|....-. .+.+++-+|+.+++.+.+...
T Consensus 351 ~~----~~i~f~~~ay~~~l~~~~e~~s~~lR~~ysS~t----tP~~~~~~dm~t~er~~Lkqq 406 (682)
T COG1770 351 EE----RGIAFDDEAYSAGLSGNPEFDSDRLRYSYSSMT----TPATLFDYDMATGERTLLKQQ 406 (682)
T ss_pred ce----eeEEecchhhhccccCCCCCCCccEEEEeeccc----ccceeEEeeccCCcEEEEEec
Confidence 74 444321 1122222222 24455555554433 567899999999998877653
No 175
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=98.56 E-value=3.5e-05 Score=73.83 Aligned_cols=297 Identities=13% Similarity=0.124 Sum_probs=176.2
Q ss_pred CCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC--cceEe-eCC--eEEEEEecCCC
Q 039497 139 GVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG--WPTWS-GDS--TIYFHRQADDG 213 (642)
Q Consensus 139 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~--~~~ws-pdg--~~~~~~~~~~g 213 (642)
+........+ +++|+...+++ .+.+|+..+....++....+. .++|- ++. ..++++ ..+.
T Consensus 105 dDWVSsv~~~--~~~IltgsYDg------------~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsa-s~Dq 169 (423)
T KOG0313|consen 105 DDWVSSVKGA--SKWILTGSYDG------------TSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSA-SMDQ 169 (423)
T ss_pred hhhhhhhccc--CceEEEeecCC------------eeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEe-cCCc
Confidence 3334444455 78999888776 677899988777777665543 34563 443 344444 6678
Q ss_pred ceEEEEEecCCCcccccCCccc-eeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCC
Q 039497 214 WWSIFRVSFPENLEFLGFPIAP-TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSAN 292 (642)
Q Consensus 214 ~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spD 292 (642)
+..||.++.....- .. .+-.++...+..++..+||.+++..+.+ ..|.+|+........... .+.
T Consensus 170 tl~Lw~~~~~~~~~------~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D-----~~lkiWs~~~~~~~~~E~--~s~- 235 (423)
T KOG0313|consen 170 TLRLWKWNVGENKV------KALKVCRGHKRSVDSVSVDSSGTRFCSGSWD-----TMLKIWSVETDEEDELES--SSN- 235 (423)
T ss_pred eEEEEEecCchhhh------hHHhHhcccccceeEEEecCCCCeEEeeccc-----ceeeecccCCCccccccc--cch-
Confidence 88999998765420 11 1112566677788888999988885444 488888842211110000 000
Q ss_pred CCEEEEEEeecCCCCCCcccceEeeccCCCceeEEe--eeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCee-EE
Q 039497 293 SEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRML--RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW-TL 369 (642)
Q Consensus 293 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~-~l 369 (642)
+.++... . ........+...+. ........|++.+ ++|.. .-...|.++|+..+... .+
T Consensus 236 -------~rrk~~~----~---~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~--v~yS~--SwDHTIk~WDletg~~~~~~ 297 (423)
T KOG0313|consen 236 -------RRRKKQK----R---EKEGGTRTPLVTLEGHTEPVSSVVWSDAT--VIYSV--SWDHTIKVWDLETGGLKSTL 297 (423)
T ss_pred -------hhhhhhh----h---hhcccccCceEEecccccceeeEEEcCCC--ceEee--cccceEEEEEeecccceeee
Confidence 0000000 0 00000011111111 1112456787733 55543 22467889999877644 34
Q ss_pred eecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCe
Q 039497 370 IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF 449 (642)
Q Consensus 370 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~ 449 (642)
+.+.....+..+|..+.|+..+. +..+++|+-.. . +++- ....+..+. ..+..+.|+|-..+
T Consensus 298 ~~~ksl~~i~~~~~~~Ll~~gss-------dr~irl~DPR~--~-----~gs~---v~~s~~gH~-nwVssvkwsp~~~~ 359 (423)
T KOG0313|consen 298 TTNKSLNCISYSPLSKLLASGSS-------DRHIRLWDPRT--G-----DGSV---VSQSLIGHK-NWVSSVKWSPTNEF 359 (423)
T ss_pred ecCcceeEeecccccceeeecCC-------CCceeecCCCC--C-----CCce---eEEeeecch-hhhhheecCCCCce
Confidence 44777889999998887776653 67788888655 2 3322 445666676 78899999998887
Q ss_pred EEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCC
Q 039497 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH 505 (642)
Q Consensus 450 l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~ 505 (642)
++.....++ .+.+||+.+-+ .++..|..+...+-.+.|. +|..|+-.+.+.
T Consensus 360 ~~~S~S~D~--t~klWDvRS~k--~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~ 410 (423)
T KOG0313|consen 360 QLVSGSYDN--TVKLWDVRSTK--APLYDIAGHNDKVLSVDWN-EGGLIVSGGADN 410 (423)
T ss_pred EEEEEecCC--eEEEEEeccCC--CcceeeccCCceEEEEecc-CCceEEeccCcc
Confidence 766655444 67788887655 1267787776667777888 455666666554
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.53 E-value=2.2e-05 Score=75.82 Aligned_cols=101 Identities=21% Similarity=0.312 Sum_probs=68.8
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEE------CCC-----CCeeEEee-----cCCceeeeeecCCCEEEEEEcCCCcc
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAK------SDG-----SKRWTLIK-----DRTAFYNSWSPTEKHVIYTSTGPIFQ 397 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d------~~~-----~~~~~l~~-----~~~~~~~~~spdg~~l~~~~~~~~~~ 397 (642)
...|+|+|+.++-..+ ++..-||... .++ .+...+.. ...+..+.|+||+..+++.+-
T Consensus 70 ~vRf~p~gelLASg~D-~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~----- 143 (434)
T KOG1009|consen 70 VVRFSPDGELLASGGD-GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSV----- 143 (434)
T ss_pred EEEEcCCcCeeeecCC-CceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeec-----
Confidence 4589999998877554 3444455443 223 21111111 467889999999999998874
Q ss_pred cCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCC
Q 039497 398 SERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR 456 (642)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~ 456 (642)
++...+|++.. +. ....+..+. ..+..++|.|-+++|+..+..
T Consensus 144 --dns~~l~Dv~~--------G~-----l~~~~~dh~-~yvqgvawDpl~qyv~s~s~d 186 (434)
T KOG1009|consen 144 --DNSVRLWDVHA--------GQ-----LLAILDDHE-HYVQGVAWDPLNQYVASKSSD 186 (434)
T ss_pred --cceEEEEEecc--------ce-----eEeeccccc-cccceeecchhhhhhhhhccC
Confidence 78889999976 33 444555555 788889999999998876643
No 177
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=98.51 E-value=2e-05 Score=77.18 Aligned_cols=200 Identities=13% Similarity=0.155 Sum_probs=129.7
Q ss_pred CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEE
Q 039497 374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453 (642)
Q Consensus 374 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~ 453 (642)
....+.|++...-.+... ..+..+.+|++.. .+.. ++ .......+..+. ..+..++|+|-...++..
T Consensus 179 eg~glsWn~~~~g~Lls~------~~d~~i~lwdi~~--~~~~--~~--~~~p~~~~~~h~-~~VeDV~~h~~h~~lF~s 245 (422)
T KOG0264|consen 179 EGYGLSWNRQQEGTLLSG------SDDHTICLWDINA--ESKE--DK--VVDPKTIFSGHE-DVVEDVAWHPLHEDLFGS 245 (422)
T ss_pred cccccccccccceeEeec------cCCCcEEEEeccc--cccC--Cc--cccceEEeecCC-cceehhhccccchhhhee
Confidence 356789999766555554 3588999999976 2110 00 011223334444 677889999977666544
Q ss_pred eCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEec-CCCCCCCCceeEEEEeCCCCceEEeeecC
Q 039497 454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN-RHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532 (642)
Q Consensus 454 ~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~-~~~~~~~~~~~l~~~d~~~~~~~~l~~~~ 532 (642)
-..+ ..|.+||+.+++. +.......+...+..++|.|-+.+|+.++. ++. |.+||+..-+....+..+
T Consensus 246 v~dd--~~L~iwD~R~~~~-~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t--------V~LwDlRnL~~~lh~~e~ 314 (422)
T KOG0264|consen 246 VGDD--GKLMIWDTRSNTS-KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT--------VALWDLRNLNKPLHTFEG 314 (422)
T ss_pred ecCC--CeEEEEEcCCCCC-CCcccccccCCceeEEEeCCCCCceEEeccCCCc--------EEEeechhcccCceeccC
Confidence 4433 4899999985321 113445556778889999996666555544 443 999999877666666666
Q ss_pred CCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee------------eccC---
Q 039497 533 PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR------------RLTW--- 597 (642)
Q Consensus 533 ~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------~lt~--- 597 (642)
+.. .+..+.|||....++.++...+ .|.+||+..-... .|-.
T Consensus 315 H~d-------ev~~V~WSPh~etvLASSg~D~----------------rl~vWDls~ig~eq~~eda~dgppEllF~HgG 371 (422)
T KOG0264|consen 315 HED-------EVFQVEWSPHNETVLASSGTDR----------------RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGG 371 (422)
T ss_pred CCc-------ceEEEEeCCCCCceeEecccCC----------------cEEEEeccccccccChhhhccCCcceeEEecC
Confidence 666 6789999999999888876543 6777776532111 1122
Q ss_pred CCCCCCCcEEecCCceEEeecCC
Q 039497 598 NGYENGTPAWHPGNQLDLGKLRL 620 (642)
Q Consensus 598 ~~~~~~~~~~s~dg~~~~~~~~~ 620 (642)
+...+.+..|.|..-+.+.+...
T Consensus 372 H~~kV~DfsWnp~ePW~I~Svae 394 (422)
T KOG0264|consen 372 HTAKVSDFSWNPNEPWTIASVAE 394 (422)
T ss_pred cccccccccCCCCCCeEEEEecC
Confidence 23456789999999887665443
No 178
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=2.3e-05 Score=79.35 Aligned_cols=132 Identities=15% Similarity=0.052 Sum_probs=91.2
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVS 409 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~ 409 (642)
..+.|+..|++|+.+...++...+.+..+.....+ ... .+.+..+.|.|..-+|++++ ...++||++.
T Consensus 525 ~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ-~PF~kskG~vq~v~FHPs~p~lfVaT--------q~~vRiYdL~ 595 (733)
T KOG0650|consen 525 RQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ-SPFRKSKGLVQRVKFHPSKPYLFVAT--------QRSVRIYDLS 595 (733)
T ss_pred ceeeeecCCceEEEeccCCCcceEEEEeccccccc-CchhhcCCceeEEEecCCCceEEEEe--------ccceEEEehh
Confidence 46689999999999888778889999988765432 222 67788999999999888887 5688899884
Q ss_pred eecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccce
Q 039497 410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489 (642)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~ 489 (642)
. ++ ..+.|..+. ..+..++.+|.|..|+..+.. ..+..+|++-+.. +.+.+-.+...+..+
T Consensus 596 k----------qe---lvKkL~tg~-kwiS~msihp~GDnli~gs~d---~k~~WfDldlssk--Pyk~lr~H~~avr~V 656 (733)
T KOG0650|consen 596 K----------QE---LVKKLLTGS-KWISSMSIHPNGDNLILGSYD---KKMCWFDLDLSSK--PYKTLRLHEKAVRSV 656 (733)
T ss_pred H----------HH---HHHHHhcCC-eeeeeeeecCCCCeEEEecCC---CeeEEEEcccCcc--hhHHhhhhhhhhhhh
Confidence 3 11 334444444 577889999999999888754 3566677764431 134444444444444
Q ss_pred eEe
Q 039497 490 SWS 492 (642)
Q Consensus 490 ~~s 492 (642)
+|+
T Consensus 657 a~H 659 (733)
T KOG0650|consen 657 AFH 659 (733)
T ss_pred hhc
Confidence 444
No 179
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.46 E-value=3.3e-05 Score=75.88 Aligned_cols=228 Identities=10% Similarity=-0.012 Sum_probs=138.7
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
..+.|+||++|++.. ....|.+++.++.+.++... .+.+..++|--.-..||..+. +..+.+|.++.
T Consensus 207 ~~avS~Dgkylatgg---~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~-------Drsvkvw~~~~- 275 (479)
T KOG0299|consen 207 TLAVSSDGKYLATGG---RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASA-------DRSVKVWSIDQ- 275 (479)
T ss_pred EEEEcCCCcEEEecC---CCceEEEecCcccchhhcccccccceeeeeeecCccceeeeec-------CCceEEEehhH-
Confidence 457899999999943 23667789999988877754 567788888766667777664 67899999865
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCccccee
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPS 490 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~ 490 (642)
. . -...+..+. ..+..+....-+ .++....++....||.+.-.+ +.+.. +.+....++
T Consensus 276 -~------s-----~vetlyGHq-d~v~~IdaL~re-R~vtVGgrDrT~rlwKi~ees-------qlifrg~~~sidcv~ 334 (479)
T KOG0299|consen 276 -L------S-----YVETLYGHQ-DGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEES-------QLIFRGGEGSIDCVA 334 (479)
T ss_pred -h------H-----HHHHHhCCc-cceeeechhccc-ceEEeccccceeEEEeccccc-------eeeeeCCCCCeeeEE
Confidence 1 1 334444444 334444433333 455555566655666662221 33322 233555667
Q ss_pred EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCc----ccccccceEEcCCCCEEEEEEecCCcc
Q 039497 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV----DRERINHVCFSADGEWLLFTANLGAVM 566 (642)
Q Consensus 491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~S~Dg~~l~~~~~~~~~~ 566 (642)
|-.|- .++..++++. |++|++..+++-.+....+...... ....+.+++..|....++..+..+-.
T Consensus 335 ~In~~-HfvsGSdnG~--------IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~v- 404 (479)
T KOG0299|consen 335 FINDE-HFVSGSDNGS--------IALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCV- 404 (479)
T ss_pred Eeccc-ceeeccCCce--------EEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCce-
Confidence 76444 4666666654 9999998777654443322211110 01245677778888777766666533
Q ss_pred cCCCCCCCCCCCCCcEEEEEcCCCceeeccCC--CCCCCCcEEecCCceEEee
Q 039497 567 AEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN--GYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 567 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~--~~~~~~~~~s~dg~~~~~~ 617 (642)
+||.+..+--+++.|..- .+++.+++|+++|+++++.
T Consensus 405 --------------rLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 405 --------------RLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred --------------EEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 677665443345544432 4677899999999876554
No 180
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.46 E-value=0.00085 Score=76.33 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=50.7
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR 407 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~ 407 (642)
..++|.|.|+.||......++..|..+.-.|-+...... ...+..+.|++|+..|++... ..+++|.
T Consensus 260 ~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~--------~~vqLWt 331 (928)
T PF04762_consen 260 GALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE--------DRVQLWT 331 (928)
T ss_pred CCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEec--------CCceEEE
Confidence 356899999999887665666777777777765544333 345788999999999998762 3488887
Q ss_pred EE
Q 039497 408 VS 409 (642)
Q Consensus 408 ~~ 409 (642)
..
T Consensus 332 ~~ 333 (928)
T PF04762_consen 332 RS 333 (928)
T ss_pred ee
Confidence 64
No 181
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=98.46 E-value=5.3e-05 Score=74.37 Aligned_cols=196 Identities=12% Similarity=0.166 Sum_probs=124.6
Q ss_pred CCccEEcCCCCEEEEEecCCCceeEEEEECCCCCe-------eEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCe
Q 039497 332 GSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR-------WTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERAT 402 (642)
Q Consensus 332 ~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~-------~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 402 (642)
+..+.|++.-.-...... ....|.++|+..... +.... ...+..++|.|--..|+-.. .++..
T Consensus 180 g~glsWn~~~~g~Lls~~--~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv------~dd~~ 251 (422)
T KOG0264|consen 180 GYGLSWNRQQEGTLLSGS--DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV------GDDGK 251 (422)
T ss_pred ccccccccccceeEeecc--CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee------cCCCe
Confidence 445688876654444332 234555555543322 11112 45678899999776665544 35889
Q ss_pred EEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC
Q 039497 403 VQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG 482 (642)
Q Consensus 403 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~ 482 (642)
+.||++.. + .. +...........+..++|+|-+.+|+.+...+ ..|.+||+..=. ..+..+..+
T Consensus 252 L~iwD~R~--~------~~----~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D--~tV~LwDlRnL~--~~lh~~e~H 315 (422)
T KOG0264|consen 252 LMIWDTRS--N------TS----KPSHSVKAHSAEVNCVAFNPFNEFILATGSAD--KTVALWDLRNLN--KPLHTFEGH 315 (422)
T ss_pred EEEEEcCC--C------CC----CCcccccccCCceeEEEeCCCCCceEEeccCC--CcEEEeechhcc--cCceeccCC
Confidence 99999975 1 11 33333333226788899999888887776543 478889987433 125667777
Q ss_pred CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEE-------------eeecCCCCCCCcccccccceEE
Q 039497 483 PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR-------------IHVAGPEGSGDVDRERINHVCF 549 (642)
Q Consensus 483 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-------------l~~~~~~~~~~~~~~~~~~~~~ 549 (642)
...+..+.|||.-..|+..+.... .|.+||+..-..++ .+..++.. .+.++.|
T Consensus 316 ~dev~~V~WSPh~etvLASSg~D~-------rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-------kV~DfsW 381 (422)
T KOG0264|consen 316 EDEVFQVEWSPHNETVLASSGTDR-------RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-------KVSDFSW 381 (422)
T ss_pred CcceEEEEeCCCCCceeEecccCC-------cEEEEeccccccccChhhhccCCcceeEEecCccc-------ccccccC
Confidence 778889999999888777766543 38889886422221 22234433 5788999
Q ss_pred cCCCCEEEEEEecCCc
Q 039497 550 SADGEWLLFTANLGAV 565 (642)
Q Consensus 550 S~Dg~~l~~~~~~~~~ 565 (642)
.|..-+++.+..+.+.
T Consensus 382 np~ePW~I~SvaeDN~ 397 (422)
T KOG0264|consen 382 NPNEPWTIASVAEDNI 397 (422)
T ss_pred CCCCCeEEEEecCCce
Confidence 9999998877766543
No 182
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.46 E-value=7.7e-05 Score=72.23 Aligned_cols=138 Identities=9% Similarity=0.086 Sum_probs=89.6
Q ss_pred eeeeEEEecCCCCCCCCC---c---eeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCC
Q 039497 17 YGFDVFSIKSPFVNAPKF---H---EHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCS 90 (642)
Q Consensus 17 ~~~~i~~~~~~~~~~~~~---~---~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~ 90 (642)
+.--||.+...- |++ . ..-|+.|...+-.-+|+ |+|..|| +...+|..-||..... ++
T Consensus 36 ~~iriW~v~r~~---~~~~~~~V~y~s~Ls~H~~aVN~vRf~-p~gelLA-Sg~D~g~v~lWk~~~~--~~--------- 99 (434)
T KOG1009|consen 36 KDIRIWKVNRSE---PGGGDMKVEYLSSLSRHTRAVNVVRFS-PDGELLA-SGGDGGEVFLWKQGDV--RI--------- 99 (434)
T ss_pred cceeeeeeeecC---CCCCceeEEEeecccCCcceeEEEEEc-CCcCeee-ecCCCceEEEEEecCc--CC---------
Confidence 455889987754 113 1 24788999999999999 9999998 4555677778876110 00
Q ss_pred ccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCC
Q 039497 91 LFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHE 170 (642)
Q Consensus 91 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~ 170 (642)
.+. .... ....+-|.+- +.+-.+....+..+||||+.++++.+.+.
T Consensus 100 -------~~~------d~e~------~~~ke~w~v~------k~lr~h~~diydL~Ws~d~~~l~s~s~dn--------- 145 (434)
T KOG1009|consen 100 -------FDA------DTEA------DLNKEKWVVK------KVLRGHRDDIYDLAWSPDSNFLVSGSVDN--------- 145 (434)
T ss_pred -------ccc------cchh------hhCccceEEE------EEecccccchhhhhccCCCceeeeeeccc---------
Confidence 000 0000 0001344432 22222444456699999999999998776
Q ss_pred CeeeEEEEEecCCCceeEeecCCCc---ceEeeCCeEEEE
Q 039497 171 LNTDIVVFQESDPNKRVIVCERGGW---PTWSGDSTIYFH 207 (642)
Q Consensus 171 ~~~~l~~~~~~~g~~~~l~~~~~~~---~~wspdg~~~~~ 207 (642)
.+++|++..|....+...+... .+|.|-++.+.+
T Consensus 146 ---s~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s 182 (434)
T KOG1009|consen 146 ---SVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVAS 182 (434)
T ss_pred ---eEEEEEeccceeEeeccccccccceeecchhhhhhhh
Confidence 7899999999988888766643 488888765544
No 183
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=1.4e-05 Score=80.82 Aligned_cols=308 Identities=15% Similarity=0.112 Sum_probs=169.5
Q ss_pred CCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeec-------CCCCcccCCeecCCCCEEEEEEeecCCCCCCccc
Q 039497 240 PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL-------NPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTI 312 (642)
Q Consensus 240 ~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~-------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 312 (642)
++...+..++..|.|.+|+. |+....+++|.+.+ .....+...+|+|.+..-++...-+. .
T Consensus 398 GHtg~Vr~iSvdp~G~wlas-----GsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~------~- 465 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLAS-----GSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGE------C- 465 (733)
T ss_pred ccCCeEEEEEecCCcceeee-----cCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecC------c-
Confidence 34445666778899999888 44555899999843 23456778899998886333322222 1
Q ss_pred ceEeeccCCCceeEEeeeCC---Ccc-EEcCCCCEEEEEecCCCceeEEEEE----CCCCCeeEEeecCCceeeeeecCC
Q 039497 313 PHLEPVASPVKELRMLRLNG---SFP-SFSPDGGLIVFNHDFELNAGIKIAK----SDGSKRWTLIKDRTAFYNSWSPTE 384 (642)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~---~~~-~~spdg~~l~~~~~~~~~~~l~~~d----~~~~~~~~l~~~~~~~~~~~spdg 384 (642)
+.+++..-. ..+....... ..+ .-.|++. ...|.-. ...+....+.....+..+.|.-.|
T Consensus 466 ~~ivnp~~G-~~~e~~~t~ell~~~~~~~~p~~~-----------~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG 533 (733)
T KOG0650|consen 466 VLIVNPIFG-DRLEVGPTKELLASAPNESEPDAA-----------VVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG 533 (733)
T ss_pred eEEeCcccc-chhhhcchhhhhhcCCCccCCccc-----------ceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence 111111100 0000000000 000 0112221 1122211 112222334447788999999999
Q ss_pred CEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEE
Q 039497 385 KHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFV 464 (642)
Q Consensus 385 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~ 464 (642)
.+|+.+.-. .....+.|..+.- .. ....+.... +.+....|.|---+|++++.+ .|.+
T Consensus 534 DYlatV~~~----~~~~~VliHQLSK--------~~-----sQ~PF~ksk-G~vq~v~FHPs~p~lfVaTq~----~vRi 591 (733)
T KOG0650|consen 534 DYLATVMPD----SGNKSVLIHQLSK--------RK-----SQSPFRKSK-GLVQRVKFHPSKPYLFVATQR----SVRI 591 (733)
T ss_pred ceEEEeccC----CCcceEEEEeccc--------cc-----ccCchhhcC-CceeEEEecCCCceEEEEecc----ceEE
Confidence 999998742 2334455555543 12 223333344 677788999988888777653 6889
Q ss_pred EECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC--ceEEeeec-CCCCCCCccc
Q 039497 465 LDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS--GLRRIHVA-GPEGSGDVDR 541 (642)
Q Consensus 465 ~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~-~~~~~~~~~~ 541 (642)
||+..++. ++.|..+...+..++.+|.|..|+..+.+.. ++.+|++-+ -.+.+... ....+-....
T Consensus 592 YdL~kqel---vKkL~tg~kwiS~msihp~GDnli~gs~d~k--------~~WfDldlsskPyk~lr~H~~avr~Va~H~ 660 (733)
T KOG0650|consen 592 YDLSKQEL---VKKLLTGSKWISSMSIHPNGDNLILGSYDKK--------MCWFDLDLSSKPYKTLRLHEKAVRSVAFHK 660 (733)
T ss_pred EehhHHHH---HHHHhcCCeeeeeeeecCCCCeEEEecCCCe--------eEEEEcccCcchhHHhhhhhhhhhhhhhcc
Confidence 99987776 5666666667788999999999998887764 777777533 22211100 0000000111
Q ss_pred ccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCC----CCCCCCcEEecCCceEEee
Q 039497 542 ERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN----GYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 542 ~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~----~~~~~~~~~s~dg~~~~~~ 617 (642)
....-.+-|+||..++|...--+.. ..+-.++. +++|..+ ...+.+..|+|.--|+++.
T Consensus 661 ryPLfas~sdDgtv~Vfhg~VY~Dl------------~qnpliVP-----lK~L~gH~~~~~~gVLd~~wHP~qpWLfsA 723 (733)
T KOG0650|consen 661 RYPLFASGSDDGTVIVFHGMVYNDL------------LQNPLIVP-----LKRLRGHEKTNDLGVLDTIWHPRQPWLFSA 723 (733)
T ss_pred ccceeeeecCCCcEEEEeeeeehhh------------hcCCceEe-----eeeccCceeecccceEeecccCCCceEEec
Confidence 1223445588898888776432211 01112222 3344443 2335677899999998876
Q ss_pred cCCC
Q 039497 618 LRLE 621 (642)
Q Consensus 618 ~~~~ 621 (642)
...|
T Consensus 724 GAd~ 727 (733)
T KOG0650|consen 724 GADG 727 (733)
T ss_pred CCCc
Confidence 5443
No 184
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.44 E-value=1.3e-05 Score=71.89 Aligned_cols=185 Identities=10% Similarity=0.028 Sum_probs=127.8
Q ss_pred cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEE
Q 039497 372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451 (642)
Q Consensus 372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~ 451 (642)
.+.+..+.|.-||++.+.+.. +..+++|..-. +. .++....+. ..+...+.+-|+..++
T Consensus 17 qgaV~avryN~dGnY~ltcGs-------drtvrLWNp~r--------g~-----liktYsghG-~EVlD~~~s~Dnskf~ 75 (307)
T KOG0316|consen 17 QGAVRAVRYNVDGNYCLTCGS-------DRTVRLWNPLR--------GA-----LIKTYSGHG-HEVLDAALSSDNSKFA 75 (307)
T ss_pred ccceEEEEEccCCCEEEEcCC-------CceEEeecccc--------cc-----eeeeecCCC-ceeeeccccccccccc
Confidence 466788899999999887753 78899998744 22 556655555 6677788888998876
Q ss_pred EEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA 531 (642)
Q Consensus 452 ~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 531 (642)
-.. |+..+++||+.+|+. .+.+-.+.+.++.+.|..+...++-.+.+.. +.+||-.+...+++...
T Consensus 76 s~G---gDk~v~vwDV~TGkv---~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s--------~r~wDCRS~s~ePiQil 141 (307)
T KOG0316|consen 76 SCG---GDKAVQVWDVNTGKV---DRRFRGHLAQVNTVRFNEESSVVASGSFDSS--------VRLWDCRSRSFEPIQIL 141 (307)
T ss_pred cCC---CCceEEEEEcccCee---eeecccccceeeEEEecCcceEEEeccccce--------eEEEEcccCCCCccchh
Confidence 544 677999999999997 7888888888899999988876555554443 78888776655554432
Q ss_pred CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCC
Q 039497 532 GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGN 611 (642)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg 611 (642)
+... -...+..-.+..|+..+.++ .+-.||+..|.+.-=. .+-.+.+..||+||
T Consensus 142 dea~--------D~V~Si~v~~heIvaGS~DG-----------------tvRtydiR~G~l~sDy-~g~pit~vs~s~d~ 195 (307)
T KOG0316|consen 142 DEAK--------DGVSSIDVAEHEIVAGSVDG-----------------TVRTYDIRKGTLSSDY-FGHPITSVSFSKDG 195 (307)
T ss_pred hhhc--------CceeEEEecccEEEeeccCC-----------------cEEEEEeecceeehhh-cCCcceeEEecCCC
Confidence 2111 11233344566677777665 5667777665443211 23346789999999
Q ss_pred ceEEee
Q 039497 612 QLDLGK 617 (642)
Q Consensus 612 ~~~~~~ 617 (642)
+..+.+
T Consensus 196 nc~La~ 201 (307)
T KOG0316|consen 196 NCSLAS 201 (307)
T ss_pred CEEEEe
Confidence 887554
No 185
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.44 E-value=6.5e-05 Score=74.42 Aligned_cols=175 Identities=13% Similarity=0.139 Sum_probs=109.8
Q ss_pred EEcCCCCEEEEEecCCCceeEEEEECCCCCee-EEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497 336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW-TLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412 (642)
Q Consensus 336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~-~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (642)
.+.-...+|+-++. .+.|.+..+.++... .+.. ...+..+.|||-.+.++... .+++.+.+|++..
T Consensus 128 ~YN~~DeyiAsvs~---gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~a------sd~G~VtlwDv~g-- 196 (673)
T KOG4378|consen 128 DYNNTDEYIASVSD---GGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIA------SDKGAVTLWDVQG-- 196 (673)
T ss_pred EecCCcceeEEecc---CCcEEEEecccCccccceecCCCCeEEEeecccccceeeEee------ccCCeEEEEeccC--
Confidence 34444456666554 256777777666533 2333 44566789999999888776 4588999999954
Q ss_pred CCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEe
Q 039497 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492 (642)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~s 492 (642)
... .......+. .....+.|||-...|+..-. -+..|++||....+. ...|+-. .....++|+
T Consensus 197 -------~sp---~~~~~~~Hs-AP~~gicfspsne~l~vsVG--~Dkki~~yD~~s~~s---~~~l~y~-~Plstvaf~ 259 (673)
T KOG4378|consen 197 -------MSP---IFHASEAHS-APCRGICFSPSNEALLVSVG--YDKKINIYDIRSQAS---TDRLTYS-HPLSTVAFS 259 (673)
T ss_pred -------CCc---ccchhhhcc-CCcCcceecCCccceEEEec--ccceEEEeecccccc---cceeeec-CCcceeeec
Confidence 110 112222222 45567899998877766553 245899999875543 3444432 345678999
Q ss_pred cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCC
Q 039497 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADG 553 (642)
Q Consensus 493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg 553 (642)
++|.+|+....++. |+.||+.+.+...-+...+.. .+..++|-+.-
T Consensus 260 ~~G~~L~aG~s~G~--------~i~YD~R~~k~Pv~v~sah~~-------sVt~vafq~s~ 305 (673)
T KOG4378|consen 260 ECGTYLCAGNSKGE--------LIAYDMRSTKAPVAVRSAHDA-------SVTRVAFQPSP 305 (673)
T ss_pred CCceEEEeecCCce--------EEEEecccCCCCceEeeeccc-------ceeEEEeeecc
Confidence 99998887777664 999999876543222222333 45667775543
No 186
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.44 E-value=2.3e-05 Score=73.34 Aligned_cols=220 Identities=13% Similarity=0.072 Sum_probs=125.6
Q ss_pred cCCcEEEEEEeccCCceeeEEEEEeec--------CCCCcccCCeecCCCC--EEEEEEeecCCCCCCcccceEeeccCC
Q 039497 252 HDGKRLAVATRRKNRNFRHIEIYDLTL--------NPNFHHYNPFVSANSE--FIGYHRFRGESTEGQSTIPHLEPVASP 321 (642)
Q Consensus 252 pdG~~l~~~~~~~~~~~~~i~~~d~~~--------~~~~~~~~~~~spDg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (642)
-+|.+++. |+...+|.+||+.. .+.+.+....+.++-. +|+-...++. ...|...--.-
T Consensus 51 Vs~~~~aS-----GssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~------i~iw~~~~W~~ 119 (362)
T KOG0294|consen 51 VSGPYVAS-----GSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGH------IIIWRVGSWEL 119 (362)
T ss_pred ecceeEec-----cCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCc------EEEEEcCCeEE
Confidence 36777776 55566999999933 2333444444444332 3333322222 11121110000
Q ss_pred CceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCC
Q 039497 322 VKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSER 400 (642)
Q Consensus 322 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 400 (642)
...+.........++.+|.|+ ||... .+...|.++|+-.++...+.. ......+.|+|.|.++++.. .
T Consensus 120 ~~slK~H~~~Vt~lsiHPS~K-LALsV--g~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~--------~ 188 (362)
T KOG0294|consen 120 LKSLKAHKGQVTDLSIHPSGK-LALSV--GGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG--------R 188 (362)
T ss_pred eeeecccccccceeEecCCCc-eEEEE--cCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEe--------c
Confidence 011111111235678899998 55544 335678888887776555544 55566699999999988877 5
Q ss_pred CeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC
Q 039497 401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT 480 (642)
Q Consensus 401 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~ 480 (642)
..+.+|.++. . . ....+... .....+.|- ++.+++...+. ..|-.+|.+++.. +..+.
T Consensus 189 ~~i~i~q~d~--A------~-----v~~~i~~~--~r~l~~~~l-~~~~L~vG~d~---~~i~~~D~ds~~~---~~~~~ 246 (362)
T KOG0294|consen 189 NKIDIYQLDN--A------S-----VFREIENP--KRILCATFL-DGSELLVGGDN---EWISLKDTDSDTP---LTEFL 246 (362)
T ss_pred cEEEEEeccc--H------h-----Hhhhhhcc--ccceeeeec-CCceEEEecCC---ceEEEeccCCCcc---ceeee
Confidence 6888888865 1 1 22222222 123334444 45555554432 3677888887665 56666
Q ss_pred CCCCccccee--EecCCCEEEEEecCCCCCCCCceeEEEEeCCCC
Q 039497 481 DGPWIDTMPS--WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS 523 (642)
Q Consensus 481 ~~~~~~~~~~--~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~ 523 (642)
.+...+..+. -.|++.+|+..+.++. |.+||++..
T Consensus 247 AH~~RVK~i~~~~~~~~~~lvTaSSDG~--------I~vWd~~~~ 283 (362)
T KOG0294|consen 247 AHENRVKDIASYTNPEHEYLVTASSDGF--------IKVWDIDME 283 (362)
T ss_pred cchhheeeeEEEecCCceEEEEeccCce--------EEEEEcccc
Confidence 6666666654 3578888888887764 788887654
No 187
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.44 E-value=0.00029 Score=67.79 Aligned_cols=253 Identities=14% Similarity=0.106 Sum_probs=135.8
Q ss_pred CceeCC-CCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeec-CC----CcceEeeCCeEEEEE-ec-CCCce
Q 039497 144 SPSVSY-SGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCE-RG----GWPTWSGDSTIYFHR-QA-DDGWW 215 (642)
Q Consensus 144 ~~~~SP-DG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~----~~~~wspdg~~~~~~-~~-~~g~~ 215 (642)
.++++| ++.-+||++.- +.-++++|..+|+..+.... .+ +...||+||+++|+. ++ +.+.-
T Consensus 9 ~~a~~p~~~~avafaRRP-----------G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G 77 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRP-----------GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRG 77 (305)
T ss_pred ceeeCCCCCeEEEEEeCC-----------CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcE
Confidence 467899 55666677543 34678999999987765553 33 356999999888876 22 23334
Q ss_pred EEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceee---EEEEEeecCCCCcccCCeecCC
Q 039497 216 SIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRH---IEIYDLTLNPNFHHYNPFVSAN 292 (642)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~---i~~~d~~~~~~~~~~~~~~spD 292 (642)
.|-.+|...+.. +...+...+..-..+.+.|||+.|+++. .|..... =...++.+ -.|
T Consensus 78 ~IgVyd~~~~~~------ri~E~~s~GIGPHel~l~pDG~tLvVAN--GGI~Thpd~GR~kLNl~t------M~p----- 138 (305)
T PF07433_consen 78 VIGVYDAARGYR------RIGEFPSHGIGPHELLLMPDGETLVVAN--GGIETHPDSGRAKLNLDT------MQP----- 138 (305)
T ss_pred EEEEEECcCCcE------EEeEecCCCcChhhEEEcCCCCEEEEEc--CCCccCcccCceecChhh------cCC-----
Confidence 555556554321 4555666676677788999999999853 2110000 00001100 000
Q ss_pred CCEEEEE-EeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCC-----CceeEEEEECCCCCe
Q 039497 293 SEFIGYH-RFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFE-----LNAGIKIAKSDGSKR 366 (642)
Q Consensus 293 g~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~-----~~~~l~~~d~~~~~~ 366 (642)
.|+|. ...++. +....+.. ...+...+++++.+||. ++|..... ...-|.+.+..+ ..
T Consensus 139 --sL~~ld~~sG~l-------l~q~~Lp~-----~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~-~~ 202 (305)
T PF07433_consen 139 --SLVYLDARSGAL-------LEQVELPP-----DLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGG-AL 202 (305)
T ss_pred --ceEEEecCCCce-------eeeeecCc-----cccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCC-cc
Confidence 12232 122220 01111111 11223345788999987 55533311 122234443322 22
Q ss_pred eEEee--------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCc
Q 039497 367 WTLIK--------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN 438 (642)
Q Consensus 367 ~~l~~--------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 438 (642)
+.+.. .+.+.+++++++|..++.++- ..+.+.+|+... + .......- ...
T Consensus 203 ~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP------rGg~~~~~d~~t---------g-----~~~~~~~l--~D~ 260 (305)
T PF07433_consen 203 RLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP------RGGRVAVWDAAT---------G-----RLLGSVPL--PDA 260 (305)
T ss_pred eeccCChHHHHhhCCceEEEEEeCCCCEEEEECC------CCCEEEEEECCC---------C-----CEeecccc--Cce
Confidence 22221 577889999999999999884 367888887654 2 22222221 234
Q ss_pred cCcEECCCCCeEEEEeCCCCceeEEEEECCC
Q 039497 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN 469 (642)
Q Consensus 439 ~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~ 469 (642)
..++..+++ ++.++ |...++......
T Consensus 261 cGva~~~~~--f~~ss---G~G~~~~~~~~~ 286 (305)
T PF07433_consen 261 CGVAPTDDG--FLVSS---GQGQLIRLSPDG 286 (305)
T ss_pred eeeeecCCc--eEEeC---CCccEEEccCcc
Confidence 445555565 44444 444676666543
No 188
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.44 E-value=3.1e-05 Score=76.05 Aligned_cols=227 Identities=11% Similarity=0.061 Sum_probs=124.4
Q ss_pred CCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---cceEeeCCeEEEEEecCCCc
Q 039497 138 YGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---WPTWSGDSTIYFHRQADDGW 214 (642)
Q Consensus 138 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~~~wspdg~~~~~~~~~~g~ 214 (642)
+.......++||||+|||+...+. .|.+|+..+.+..+.+..+.+ .++|-....-+|+. ..+..
T Consensus 201 h~keil~~avS~Dgkylatgg~d~------------~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~-s~Drs 267 (479)
T KOG0299|consen 201 HVKEILTLAVSSDGKYLATGGRDR------------HVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSA-SADRS 267 (479)
T ss_pred ccceeEEEEEcCCCcEEEecCCCc------------eEEEecCcccchhhcccccccceeeeeeecCccceeee-ecCCc
Confidence 334456688999999999986555 677999999998888554332 34665444444444 34676
Q ss_pred eEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCC
Q 039497 215 WSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSE 294 (642)
Q Consensus 215 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~ 294 (642)
..+|.++... ..+.+-.+...+..+....-++ .+.+. ....++.+|++ |+..
T Consensus 268 vkvw~~~~~s---------~vetlyGHqd~v~~IdaL~reR-~vtVG----grDrT~rlwKi--------------~ees 319 (479)
T KOG0299|consen 268 VKVWSIDQLS---------YVETLYGHQDGVLGIDALSRER-CVTVG----GRDRTVRLWKI--------------PEES 319 (479)
T ss_pred eEEEehhHhH---------HHHHHhCCccceeeechhcccc-eEEec----cccceeEEEec--------------cccc
Confidence 7888776443 3444555543444444333333 33332 22347888887 4444
Q ss_pred EEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---
Q 039497 295 FIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--- 371 (642)
Q Consensus 295 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--- 371 (642)
+|.|....+.. ...+|=.+. .++.. ...+.|.++++...++..+..
T Consensus 320 qlifrg~~~si---------------------------dcv~~In~~-HfvsG---SdnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 320 QLIFRGGEGSI---------------------------DCVAFINDE-HFVSG---SDNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred eeeeeCCCCCe---------------------------eeEEEeccc-ceeec---cCCceEEEeeecccCceeEeeccc
Confidence 55554221110 001111111 11111 223445555554444322221
Q ss_pred -----------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcccc-CCCCcc
Q 039497 372 -----------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE-ETGNNA 439 (642)
Q Consensus 372 -----------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 439 (642)
+..+.+++..|....++..+ .++.++||.+.. +-- ....|..- -.+.+.
T Consensus 369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS-------~~G~vrLW~i~~--------g~r----~i~~l~~ls~~GfVN 429 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVIPGSDLLASGS-------WSGCVRLWKIED--------GLR----AINLLYSLSLVGFVN 429 (479)
T ss_pred cccCCccccccccceeeeEecccCceEEecC-------CCCceEEEEecC--------Ccc----ccceeeecccccEEE
Confidence 11455667777766665554 378999999976 110 22222211 126788
Q ss_pred CcEECCCCCeEEEEeC
Q 039497 440 FPSCSPDGKFLVFRSG 455 (642)
Q Consensus 440 ~~~~SpDg~~l~~~~~ 455 (642)
.+.|+++|++|+..-.
T Consensus 430 sl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 430 SLAFSNSGKRIVAGIG 445 (479)
T ss_pred EEEEccCCCEEEEecc
Confidence 8999999998876653
No 189
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.43 E-value=1.8e-05 Score=76.21 Aligned_cols=225 Identities=15% Similarity=0.190 Sum_probs=142.1
Q ss_pred CCEEEEEecCCCceeEEEEECC-CCCee-E--Ee--ecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCC
Q 039497 341 GGLIVFNHDFELNAGIKIAKSD-GSKRW-T--LI--KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414 (642)
Q Consensus 341 g~~l~~~~~~~~~~~l~~~d~~-~~~~~-~--l~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 414 (642)
.++|+++....+.....++.+. .|+.- . +. +.+.+..+.|.|-...++... .++..+.||.+.. ++
T Consensus 44 PkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASg------SeD~~v~vW~IPe--~~ 115 (472)
T KOG0303|consen 44 PKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASG------SEDTKVMVWQIPE--NG 115 (472)
T ss_pred CceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecC------CCCceEEEEECCC--cc
Confidence 4777776654444455554443 22211 1 11 145577889999776666554 3588999999976 32
Q ss_pred CCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecC
Q 039497 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494 (642)
Q Consensus 415 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spd 494 (642)
-..+ +......|..+. ..+..+.|+|--.-+++++. ++..|.+||+.+|+. +..|. ++..+.+..|+-|
T Consensus 116 l~~~----ltepvv~L~gH~-rrVg~V~wHPtA~NVLlsag--~Dn~v~iWnv~tgea---li~l~-hpd~i~S~sfn~d 184 (472)
T KOG0303|consen 116 LTRD----LTEPVVELYGHQ-RRVGLVQWHPTAPNVLLSAG--SDNTVSIWNVGTGEA---LITLD-HPDMVYSMSFNRD 184 (472)
T ss_pred cccC----cccceEEEeecc-eeEEEEeecccchhhHhhcc--CCceEEEEeccCCce---eeecC-CCCeEEEEEeccC
Confidence 1111 111456666776 78888999998777776664 456899999999996 66666 7778889999999
Q ss_pred CCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCC
Q 039497 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPN 574 (642)
Q Consensus 495 G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~ 574 (642)
|.+|+.+..+.. |.+||...++...-.. .+.+. ....+.|-.+|+ |+.+.... -
T Consensus 185 Gs~l~TtckDKk--------vRv~dpr~~~~v~e~~-~heG~------k~~Raifl~~g~-i~tTGfsr-~--------- 238 (472)
T KOG0303|consen 185 GSLLCTTCKDKK--------VRVIDPRRGTVVSEGV-AHEGA------KPARAIFLASGK-IFTTGFSR-M--------- 238 (472)
T ss_pred Cceeeeecccce--------eEEEcCCCCcEeeecc-cccCC------CcceeEEeccCc-eeeecccc-c---------
Confidence 999988887765 9999998887654332 33331 345678889998 54443221 1
Q ss_pred CCCCCCcEEEEEcCC----CceeeccCCCCCCCCcEEecCCceE
Q 039497 575 QFQPYGDLYVVKLDG----SGLRRLTWNGYENGTPAWHPGNQLD 614 (642)
Q Consensus 575 ~~~~~~~l~~~~~~~----~~~~~lt~~~~~~~~~~~s~dg~~~ 614 (642)
...++-+|+.+. .....|-.. ..+..|.|.+|...+
T Consensus 239 ---seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~dt~iv 278 (472)
T KOG0303|consen 239 ---SERQIALWDPNNLEEPIALQELDTS-NGVLLPFYDPDTSIV 278 (472)
T ss_pred ---cccceeccCcccccCcceeEEeccC-CceEEeeecCCCCEE
Confidence 123555665432 112333333 334678888887443
No 190
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.42 E-value=0.00029 Score=81.59 Aligned_cols=207 Identities=13% Similarity=0.120 Sum_probs=120.8
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeec------------------CCceeeeeecCCCEEEEEEcCC
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD------------------RTAFYNSWSPTEKHVIYTSTGP 394 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~------------------~~~~~~~~spdg~~l~~~~~~~ 394 (642)
..+++.++++.|++.. .....|.++|+.++....+... .....++++|++..|+++..
T Consensus 627 ~GIavd~~gn~LYVaD--t~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~-- 702 (1057)
T PLN02919 627 QGLAYNAKKNLLYVAD--TENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA-- 702 (1057)
T ss_pred cEEEEeCCCCEEEEEe--CCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC--
Confidence 3557888888665544 3346788889887766555321 12346789997777877763
Q ss_pred CcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc--------------cCCCCccCcEECCCCCeEEEEeCCCCce
Q 039497 395 IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK--------------EETGNNAFPSCSPDGKFLVFRSGRSGHK 460 (642)
Q Consensus 395 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--------------~~~~~~~~~~~SpDg~~l~~~~~~~g~~ 460 (642)
....+++++... + ....+.. ........++++|||++|+++... ..
T Consensus 703 ----~~~~I~v~d~~~---------g-----~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~--n~ 762 (1057)
T PLN02919 703 ----GQHQIWEYNISD---------G-----VTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE--SS 762 (1057)
T ss_pred ----CCCeEEEEECCC---------C-----eEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC--CC
Confidence 245555554422 1 1111110 000234458899999988877653 35
Q ss_pred eEEEEECCCCccccceeeCCC--------------CC--------CcccceeEecCCCEEEEEecCCCCCCCCceeEEEE
Q 039497 461 NLFVLDAVNGEFNGDIRQLTD--------------GP--------WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVI 518 (642)
Q Consensus 461 ~l~~~d~~~g~~~~~~~~l~~--------------~~--------~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~ 518 (642)
.|.++|++++.. ..+.. .. .....+++++||+ |+++...+ ..|.++
T Consensus 763 ~Irv~D~~tg~~----~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N-------~rIrvi 830 (1057)
T PLN02919 763 SIRALDLKTGGS----RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYN-------HKIKKL 830 (1057)
T ss_pred eEEEEECCCCcE----EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCC-------CEEEEE
Confidence 899999887652 22110 00 0123568899997 55554433 349999
Q ss_pred eCCCCceEEeeecCCCCC-----CCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce
Q 039497 519 KPDGSGLRRIHVAGPEGS-----GDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL 592 (642)
Q Consensus 519 d~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 592 (642)
|.+++....+...+..+. .......+..+++++||+ |+++...+ ..|.++++.++..
T Consensus 831 D~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~N----------------n~Irvid~~~~~~ 892 (1057)
T PLN02919 831 DPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTNN----------------SLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECCC----------------CEEEEEECCCCcc
Confidence 998887765543221110 001112456789999997 55554332 2788888877653
No 191
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.39 E-value=3.4e-06 Score=85.58 Aligned_cols=189 Identities=13% Similarity=0.109 Sum_probs=123.9
Q ss_pred CccEEcC-CCCEEEEEecCCCceeEEEEECCCCCeeE------Eee-cCCceeeeeecCCC-EEEEEEcCCCcccCCCeE
Q 039497 333 SFPSFSP-DGGLIVFNHDFELNAGIKIAKSDGSKRWT------LIK-DRTAFYNSWSPTEK-HVIYTSTGPIFQSERATV 403 (642)
Q Consensus 333 ~~~~~sp-dg~~l~~~~~~~~~~~l~~~d~~~~~~~~------l~~-~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~ 403 (642)
..+.|.| |..+|+...+ ++..+||.+...+..... ++. ...+..+.|.|=-. .|+..+. +..+
T Consensus 631 tDl~WdPFD~~rLAVa~d-dg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy-------d~Ti 702 (1012)
T KOG1445|consen 631 TDLHWDPFDDERLAVATD-DGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASY-------DSTI 702 (1012)
T ss_pred eecccCCCChHHeeeccc-CceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhc-------ccee
Confidence 4567877 6778888765 667788888776654322 222 45677888888433 3344432 7899
Q ss_pred EEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC
Q 039497 404 QIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP 483 (642)
Q Consensus 404 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~ 483 (642)
+||++.. .. ....|..+. ..+..++|||||+.++.... +..|.+++..+++ +.+..+.
T Consensus 703 ~lWDl~~--------~~-----~~~~l~gHt-dqIf~~AWSpdGr~~AtVcK---Dg~~rVy~Prs~e-----~pv~Eg~ 760 (1012)
T KOG1445|consen 703 ELWDLAN--------AK-----LYSRLVGHT-DQIFGIAWSPDGRRIATVCK---DGTLRVYEPRSRE-----QPVYEGK 760 (1012)
T ss_pred eeeehhh--------hh-----hhheeccCc-CceeEEEECCCCcceeeeec---CceEEEeCCCCCC-----CccccCC
Confidence 9999976 23 456677776 78889999999999987763 3478999988776 4554443
Q ss_pred Cc----ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEE
Q 039497 484 WI----DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559 (642)
Q Consensus 484 ~~----~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~ 559 (642)
+. ...+.|.=||++|++...+.. ...+|-+||..+-....|........ .....+.+.+|...|+++
T Consensus 761 gpvgtRgARi~wacdgr~viv~Gfdk~----SeRQv~~Y~Aq~l~~~pl~t~~lDva-----ps~LvP~YD~Ds~~lflt 831 (1012)
T KOG1445|consen 761 GPVGTRGARILWACDGRIVIVVGFDKS----SERQVQMYDAQTLDLRPLYTQVLDVA-----PSPLVPHYDYDSNVLFLT 831 (1012)
T ss_pred CCccCcceeEEEEecCcEEEEeccccc----chhhhhhhhhhhccCCcceeeeeccc-----CccccccccCCCceEEEe
Confidence 32 345789999999998887654 45678888765543333322211110 023456778888766554
Q ss_pred E
Q 039497 560 A 560 (642)
Q Consensus 560 ~ 560 (642)
.
T Consensus 832 G 832 (1012)
T KOG1445|consen 832 G 832 (1012)
T ss_pred c
Confidence 4
No 192
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.38 E-value=0.00017 Score=75.70 Aligned_cols=193 Identities=15% Similarity=0.117 Sum_probs=109.7
Q ss_pred EEcCCCCEEEEEecCCCceeEEEEECCCCCe-eEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCC
Q 039497 336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKR-WTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414 (642)
Q Consensus 336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 414 (642)
-++|||+.+.-. ..-...+..+|.++.+. .++...+....+.++|||+++++++.. . .....+..++. .
T Consensus 199 PlpnDGk~l~~~--~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyN----s-E~G~tl~em~a--~- 268 (635)
T PRK02888 199 PLPNDGKDLDDP--KKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYN----S-EEGVTLAEMMA--A- 268 (635)
T ss_pred ccCCCCCEeecc--cceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccC----c-ccCcceeeecc--c-
Confidence 358899866332 23345667788886554 334346677888999999999888632 1 11223333332 1
Q ss_pred CCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC----CccccceeeCCCCCCccccee
Q 039497 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN----GEFNGDIRQLTDGPWIDTMPS 490 (642)
Q Consensus 415 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~----g~~~~~~~~l~~~~~~~~~~~ 490 (642)
.. . ..+.-.. .....+.+||++..+. ...+-++|..+ +.. ....|.. ....+.+.
T Consensus 269 ----e~-----d-~~vvfni---~~iea~vkdGK~~~V~-----gn~V~VID~~t~~~~~~~--v~~yIPV-GKsPHGV~ 327 (635)
T PRK02888 269 ----ER-----D-WVVVFNI---ARIEEAVKAGKFKTIG-----GSKVPVVDGRKAANAGSA--LTRYVPV-PKNPHGVN 327 (635)
T ss_pred ----cC-----c-eEEEEch---HHHHHhhhCCCEEEEC-----CCEEEEEECCccccCCcc--eEEEEEC-CCCccceE
Confidence 00 1 1111111 1112567799977652 23688999887 321 1333433 34557889
Q ss_pred EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce---------EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEe
Q 039497 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL---------RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN 561 (642)
Q Consensus 491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~---------~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~ 561 (642)
+||||++++.++... ..+-++|++..+. ..+...-..+ ..+.+.+|+++|. +|++-
T Consensus 328 vSPDGkylyVanklS-------~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG------lGPLHTaFDg~G~--aytsl 392 (635)
T PRK02888 328 TSPDGKYFIANGKLS-------PTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG------LGPLHTAFDGRGN--AYTTL 392 (635)
T ss_pred ECCCCCEEEEeCCCC-------CcEEEEEChhhhhhhhccCCccceEEEeeccC------CCcceEEECCCCC--EEEeE
Confidence 999999999887644 3488889876432 1111111111 1345789999986 44443
Q ss_pred cCCcccCCCCCCCCCCCCCcEEEEEcCC
Q 039497 562 LGAVMAEPVSWPNQFQPYGDLYVVKLDG 589 (642)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 589 (642)
--. .+|..|+++.
T Consensus 393 f~d---------------sqv~kwn~~~ 405 (635)
T PRK02888 393 FLD---------------SQIVKWNIEA 405 (635)
T ss_pred eec---------------ceeEEEehHH
Confidence 221 2788888765
No 193
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=98.38 E-value=0.00015 Score=69.62 Aligned_cols=150 Identities=16% Similarity=0.164 Sum_probs=99.7
Q ss_pred cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEE
Q 039497 372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451 (642)
Q Consensus 372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~ 451 (642)
...+.++.|++ ...++-++ .+..++.|++.+ ++ ....++... ....+..+|..+.|+
T Consensus 260 t~~Vs~V~w~d-~~v~yS~S-------wDHTIk~WDlet--------g~-----~~~~~~~~k--sl~~i~~~~~~~Ll~ 316 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVS-------WDHTIKVWDLET--------GG-----LKSTLTTNK--SLNCISYSPLSKLLA 316 (423)
T ss_pred ccceeeEEEcC-CCceEeec-------ccceEEEEEeec--------cc-----ceeeeecCc--ceeEeecccccceee
Confidence 45678899987 44444444 378999999998 45 555555543 566788999888777
Q ss_pred EEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA 531 (642)
Q Consensus 452 ~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 531 (642)
..+ ....|.+||+.++.-.....++..+...+..+.|+|...+++......+ .+.+||+.+.+...-...
T Consensus 317 ~gs---sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~-------t~klWDvRS~k~plydI~ 386 (423)
T KOG0313|consen 317 SGS---SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN-------TVKLWDVRSTKAPLYDIA 386 (423)
T ss_pred ecC---CCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCC-------eEEEEEeccCCCcceeec
Confidence 665 3458999999876521123456677777889999999888777665443 388999977653333333
Q ss_pred CCCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497 532 GPEGSGDVDRERINHVCFSADGEWLLFTANL 562 (642)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~ 562 (642)
+++. .+.++.|. +|..|+....+
T Consensus 387 ~h~D-------Kvl~vdW~-~~~~IvSGGaD 409 (423)
T KOG0313|consen 387 GHND-------KVLSVDWN-EGGLIVSGGAD 409 (423)
T ss_pred cCCc-------eEEEEecc-CCceEEeccCc
Confidence 4444 56677775 45555554444
No 194
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.38 E-value=1.3e-05 Score=79.86 Aligned_cols=169 Identities=17% Similarity=0.234 Sum_probs=107.7
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (642)
..+|+|||.-|+...+ + +.|-++...|--...+.. ...+..++|.|+.+.++|+. .+.+.|-.+..
T Consensus 109 ~gRW~~dGtgLlt~GE-D--G~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~--------g~h~~IKpL~~-- 175 (737)
T KOG1524|consen 109 SGRWSPDGAGLLTAGE-D--GVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ--------GGHISIKPLAA-- 175 (737)
T ss_pred hcccCCCCceeeeecC-C--ceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec--------CCeEEEeeccc--
Confidence 4589999998877654 3 455555544433223333 56789999999999999997 45566655544
Q ss_pred CCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEe
Q 039497 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492 (642)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~s 492 (642)
+ . ++-+-..+. +.+..+.|++....|+... .+-...+||.. |.. +-.-..+.+.+.+++|.
T Consensus 176 n------~-----k~i~WkAHD-GiiL~~~W~~~s~lI~sgG---ED~kfKvWD~~-G~~---Lf~S~~~ey~ITSva~n 236 (737)
T KOG1524|consen 176 N------S-----KIIRWRAHD-GLVLSLSWSTQSNIIASGG---EDFRFKIWDAQ-GAN---LFTSAAEEYAITSVAFN 236 (737)
T ss_pred c------c-----ceeEEeccC-cEEEEeecCccccceeecC---CceeEEeeccc-Ccc---cccCChhccceeeeeec
Confidence 1 1 333444454 7788899999988776443 23466788877 543 34444456778899999
Q ss_pred cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
|| +.++..+.+ +.+ +.... .+ .+..++||+||..++.....+
T Consensus 237 pd-~~~~v~S~n----------t~R----------~~~p~-~G-------SifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 237 PE-KDYLLWSYN----------TAR----------FSSPR-VG-------SIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred cc-cceeeeeee----------eee----------ecCCC-cc-------ceEEEEEcCCCceeeccccCc
Confidence 99 444444332 122 22111 22 467899999999887665443
No 195
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.38 E-value=0.00035 Score=68.69 Aligned_cols=179 Identities=20% Similarity=0.219 Sum_probs=103.5
Q ss_pred eeEEEEECCCCCe-eEEee------cCCceeeeeecCCCEEEEEEcC---CCcccCCCeEEEEEEEeecCCCCCCCCCcc
Q 039497 354 AGIKIAKSDGSKR-WTLIK------DRTAFYNSWSPTEKHVIYTSTG---PIFQSERATVQIARVSFQLDPSDDNNREEI 423 (642)
Q Consensus 354 ~~l~~~d~~~~~~-~~l~~------~~~~~~~~~spdg~~l~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 423 (642)
..+++++.+.+.. +.+.. ..........|||+ ++|.... .........-.||.++. . ++
T Consensus 85 ~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p--~-----g~--- 153 (307)
T COG3386 85 HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDP--D-----GG--- 153 (307)
T ss_pred cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcC--C-----CC---
Confidence 4566666665555 33333 22355778899987 5555433 11222233447888875 2 22
Q ss_pred ccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC--Cccccc--eeeCCCCCCcccceeEecCCCEEE
Q 039497 424 PCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN--GEFNGD--IRQLTDGPWIDTMPSWSPKGDLIA 499 (642)
Q Consensus 424 ~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~--g~~~~~--~~~l~~~~~~~~~~~~spdG~~l~ 499 (642)
..+.+...- .....++|||||+.++++.... ..|++++.+. +..... .......++..-..+...||++.+
T Consensus 154 --~~~l~~~~~-~~~NGla~SpDg~tly~aDT~~--~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~ 228 (307)
T COG3386 154 --VVRLLDDDL-TIPNGLAFSPDGKTLYVADTPA--NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWV 228 (307)
T ss_pred --EEEeecCcE-EecCceEECCCCCEEEEEeCCC--CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEE
Confidence 444444423 4566799999999998887543 4788887752 322000 112222334445567788887433
Q ss_pred EEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEE-cCCCCEEEEEEecCC
Q 039497 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCF-SADGEWLLFTANLGA 564 (642)
Q Consensus 500 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-S~Dg~~l~~~~~~~~ 564 (642)
....+ ...|.+++.++.....+..... .+..+.| .++.+.|++++...+
T Consensus 229 -~a~~~------g~~v~~~~pdG~l~~~i~lP~~---------~~t~~~FgG~~~~~L~iTs~~~~ 278 (307)
T COG3386 229 -AAVWG------GGRVVRFNPDGKLLGEIKLPVK---------RPTNPAFGGPDLNTLYITSARSG 278 (307)
T ss_pred -ecccC------CceEEEECCCCcEEEEEECCCC---------CCccceEeCCCcCEEEEEecCCC
Confidence 33221 1249999999666665554211 3456666 678899999987654
No 196
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=98.37 E-value=7.2e-05 Score=72.07 Aligned_cols=158 Identities=17% Similarity=0.080 Sum_probs=91.1
Q ss_pred eeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCcccccccc-CCCEEEEEEeccCCCcccccccceE
Q 039497 45 INFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA-RNNKLFFISAHEQPDQIFKSWSALY 123 (642)
Q Consensus 45 ~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~l~ 123 (642)
....|++| |||+.+||....++...||....++.....+ ... ....|+| .++.+.+....... ...
T Consensus 25 ~~~s~AvS-~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~---~l~~PS~d~~g~~W~v~~~~~~--------~~~ 91 (253)
T PF10647_consen 25 DVTSPAVS-PDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGG---SLTRPSWDPDGWVWTVDDGSGG--------VRV 91 (253)
T ss_pred cccceEEC-CCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCC---ccccccccCCCCEEEEEcCCCc--------eEE
Confidence 56789999 9999999998666788899986655322111 111 2225777 33555554443321 122
Q ss_pred EEEccCCce--EecccCCC--ccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEec---CCCceeEeec-----
Q 039497 124 STDLKASKF--TRLTPYGV--VDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQES---DPNKRVIVCE----- 191 (642)
Q Consensus 124 ~~~~~~~~~--~~lt~~~~--~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~l~~~----- 191 (642)
..+..+++. ..+.-... .....++||||++||+..... +...|++--+. +|....+...
T Consensus 92 ~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~---------~~~~v~va~V~r~~~g~~~~l~~~~~~~~ 162 (253)
T PF10647_consen 92 VRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDG---------GGGRVYVAGVVRDGDGVPRRLTGPRRVAP 162 (253)
T ss_pred EEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecC---------CCCeEEEEEEEeCCCCCcceeccceEecc
Confidence 222233333 33332211 345689999999999887554 34577776543 3323333321
Q ss_pred -CC---CcceEeeCCeEEEEEecCCCceEEEEEecCCC
Q 039497 192 -RG---GWPTWSGDSTIYFHRQADDGWWSIFRVSFPEN 225 (642)
Q Consensus 192 -~~---~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~ 225 (642)
.. ..+.|.+++.+++.....++.... .+...++
T Consensus 163 ~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~-~v~~dG~ 199 (253)
T PF10647_consen 163 PLLSDVTDVAWSDDSTLVVLGRSAGGPVVR-LVSVDGG 199 (253)
T ss_pred cccCcceeeeecCCCEEEEEeCCCCCceeE-EEEccCC
Confidence 11 246999999988887444442222 4666666
No 197
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=1.2e-05 Score=72.96 Aligned_cols=219 Identities=14% Similarity=0.109 Sum_probs=140.6
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVS 409 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~ 409 (642)
..+||+.-.-++++.. +.+.|.++|+.- ...++.. ...+.++.|++-.++.+.++ .-+..++||+.+
T Consensus 65 dV~Wse~~e~~~~~a~--GDGSLrl~d~~~-~s~Pi~~~kEH~~EV~Svdwn~~~r~~~lts------SWD~TiKLW~~~ 135 (311)
T KOG0277|consen 65 DVAWSENHENQVIAAS--GDGSLRLFDLTM-PSKPIHKFKEHKREVYSVDWNTVRRRIFLTS------SWDGTIKLWDPN 135 (311)
T ss_pred EeeecCCCcceEEEEe--cCceEEEeccCC-CCcchhHHHhhhhheEEeccccccceeEEee------ccCCceEeecCC
Confidence 5689998777777664 345666667432 2234332 56788999999877777666 348899999986
Q ss_pred eecCCCCCCCCCccccceEEccccCCCCccCcEECCCC-CeEEEEeCCCCceeEEEEECCC-CccccceeeCCCCCCccc
Q 039497 410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG-KFLVFRSGRSGHKNLFVLDAVN-GEFNGDIRQLTDGPWIDT 487 (642)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg-~~l~~~~~~~g~~~l~~~d~~~-g~~~~~~~~l~~~~~~~~ 487 (642)
. .. ..+.+..+. ..+....|||-- .-++.++ ++..+-+||+.. |+. ..|..+...+.
T Consensus 136 r--------~~-----Sv~Tf~gh~-~~Iy~a~~sp~~~nlfas~S---gd~~l~lwdvr~~gk~----~~i~ah~~Eil 194 (311)
T KOG0277|consen 136 R--------PN-----SVQTFNGHN-SCIYQAAFSPHIPNLFASAS---GDGTLRLWDVRSPGKF----MSIEAHNSEIL 194 (311)
T ss_pred C--------Cc-----ceEeecCCc-cEEEEEecCCCCCCeEEEcc---CCceEEEEEecCCCce----eEEEeccceeE
Confidence 5 22 566666665 778889999954 4455444 444566666542 553 33555555667
Q ss_pred ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA 567 (642)
Q Consensus 488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~ 567 (642)
...|+.-...+++++..++ -|+.||+..-+.......++.- -+..+.|||-...|+.+++..-.
T Consensus 195 ~cdw~ky~~~vl~Tg~vd~-------~vr~wDir~~r~pl~eL~gh~~-------AVRkvk~Sph~~~lLaSasYDmT-- 258 (311)
T KOG0277|consen 195 CCDWSKYNHNVLATGGVDN-------LVRGWDIRNLRTPLFELNGHGL-------AVRKVKFSPHHASLLASASYDMT-- 258 (311)
T ss_pred eecccccCCcEEEecCCCc-------eEEEEehhhccccceeecCCce-------EEEEEecCcchhhHhhhccccce--
Confidence 7899987777777766543 3899999754432221223222 45778999998888877766532
Q ss_pred CCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecC
Q 039497 568 EPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPG 610 (642)
Q Consensus 568 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~d 610 (642)
.+||......+.+.+...+..++..+.||+-
T Consensus 259 ------------~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~ 289 (311)
T KOG0277|consen 259 ------------VRIWDPERQDSAIETVDHHTEFVCGLDWSLF 289 (311)
T ss_pred ------------EEecccccchhhhhhhhccceEEeccccccc
Confidence 2777554444445555556566667777764
No 198
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.35 E-value=0.00014 Score=67.37 Aligned_cols=144 Identities=15% Similarity=0.238 Sum_probs=103.1
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCee--EEee------cCCceeeeeec--CCCEEEEEEcCCCcccCCCe
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW--TLIK------DRTAFYNSWSP--TEKHVIYTSTGPIFQSERAT 402 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~--~l~~------~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~ 402 (642)
..+.|.|++.+++... .++|.+++++.+... .+.. .....+-+||| ||+.++.+. +..
T Consensus 127 ~cvew~Pns~klasm~----dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~--------d~t 194 (370)
T KOG1007|consen 127 NCVEWEPNSDKLASMD----DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS--------DST 194 (370)
T ss_pred eeEEEcCCCCeeEEec----cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC--------CCc
Confidence 3568999999998865 367888888766542 2222 22355678999 899998876 678
Q ss_pred EEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC
Q 039497 403 VQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG 482 (642)
Q Consensus 403 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~ 482 (642)
++.|++.+ . . +...|.......+..+.|.|+-++++.+..+++ .|.+||...-+. +++.+..+
T Consensus 195 l~~~D~RT--~------~-----~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdg--yvriWD~R~tk~--pv~el~~H 257 (370)
T KOG1007|consen 195 LQFWDLRT--M------K-----KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDG--YVRIWDTRKTKF--PVQELPGH 257 (370)
T ss_pred EEEEEccc--h------h-----hhcchhhhhcceeeeccCCCCceEEEEEcCCCc--cEEEEeccCCCc--cccccCCC
Confidence 99999876 2 2 334444444356788999999999988887666 677788764332 26777778
Q ss_pred CCcccceeEecCCCEEEEEecCC
Q 039497 483 PWIDTMPSWSPKGDLIAFSSNRH 505 (642)
Q Consensus 483 ~~~~~~~~~spdG~~l~~~~~~~ 505 (642)
...+..+.|.|.-..|+.++...
T Consensus 258 sHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 258 SHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred ceEEEEEEecCccceEEEecCCC
Confidence 77888899999877777776654
No 199
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=98.35 E-value=5.4e-05 Score=71.99 Aligned_cols=271 Identities=15% Similarity=0.104 Sum_probs=163.3
Q ss_pred CCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEee--------cCCCCcccCCeecCCCCEEEEEEeecCCCCCCc
Q 039497 239 TPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT--------LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQS 310 (642)
Q Consensus 239 ~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~--------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~ 310 (642)
..+-..+..+++.|...+++. ++....+.+||+. +++.......++|+---+|+...+++..
T Consensus 148 ~gHlgWVr~vavdP~n~wf~t-----gs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V----- 217 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFAT-----GSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV----- 217 (460)
T ss_pred hhccceEEEEeeCCCceeEEe-----cCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCee-----
Confidence 344557778888999998888 5556699999993 3344455667777766666555443331
Q ss_pred ccceEeecc-CC-CceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCE
Q 039497 311 TIPHLEPVA-SP-VKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKH 386 (642)
Q Consensus 311 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~ 386 (642)
.-| ++. .+ .+.+--.-.....+...|.-+.|+..+ + ...+.++|+.+........ ...+..+.+.|-.-+
T Consensus 218 -KCw--DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~g-r--Dst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpq 291 (460)
T KOG0285|consen 218 -KCW--DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGG-R--DSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQ 291 (460)
T ss_pred -EEE--echhhhhHHHhccccceeEEEeccccceeEEecC-C--cceEEEeeecccceEEEecCCCCcceeEEeecCCCc
Confidence 111 111 11 000000000113456677666555433 2 3456666776665444443 556778888887777
Q ss_pred EEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEE
Q 039497 387 VIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLD 466 (642)
Q Consensus 387 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d 466 (642)
++..+. +..+++|++.. ++ ....++.+. ..+..+...|+...++-++ ...|-.|+
T Consensus 292 vit~S~-------D~tvrlWDl~a--------gk-----t~~tlt~hk-ksvral~lhP~e~~fASas----~dnik~w~ 346 (460)
T KOG0285|consen 292 VITGSH-------DSTVRLWDLRA--------GK-----TMITLTHHK-KSVRALCLHPKENLFASAS----PDNIKQWK 346 (460)
T ss_pred eEEecC-------CceEEEeeecc--------Cc-----eeEeeeccc-ceeeEEecCCchhhhhccC----Cccceecc
Confidence 887764 78999999976 44 667777776 7788888999765444332 23677888
Q ss_pred CCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce-EEeeecCCCCCCCccc-ccc
Q 039497 467 AVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL-RRIHVAGPEGSGDVDR-ERI 544 (642)
Q Consensus 467 ~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~-~~~ 544 (642)
+-.|+. +..+..+...+..++...|| +++.+.++. .|+.||-+++.- +.+...-..++ .+. ..+
T Consensus 347 ~p~g~f---~~nlsgh~~iintl~~nsD~--v~~~G~dng-------~~~fwdwksg~nyQ~~~t~vqpGS--l~sEagI 412 (460)
T KOG0285|consen 347 LPEGEF---LQNLSGHNAIINTLSVNSDG--VLVSGGDNG-------SIMFWDWKSGHNYQRGQTIVQPGS--LESEAGI 412 (460)
T ss_pred CCccch---hhccccccceeeeeeeccCc--eEEEcCCce-------EEEEEecCcCcccccccccccCCc--cccccce
Confidence 888887 66677776777777777776 444444332 389999877643 22211000110 000 034
Q ss_pred cceEEcCCCCEEEEEEecCC
Q 039497 545 NHVCFSADGEWLLFTANLGA 564 (642)
Q Consensus 545 ~~~~~S~Dg~~l~~~~~~~~ 564 (642)
....|...|.+|+....+..
T Consensus 413 ~as~fDktg~rlit~eadKt 432 (460)
T KOG0285|consen 413 FASCFDKTGSRLITGEADKT 432 (460)
T ss_pred eEEeecccCceEEeccCCcc
Confidence 56678888988887766553
No 200
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.32 E-value=0.0021 Score=62.73 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=78.0
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--------------cCCceeeeeecCCCEEEEEEcC-CCccc
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--------------DRTAFYNSWSPTEKHVIYTSTG-PIFQS 398 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--------------~~~~~~~~~spdg~~l~~~~~~-~~~~~ 398 (642)
.+.++.++.+++|.+. .+.|+.+++.+........ .++-.-+++++..++|++.... ....-
T Consensus 188 ~~~~~~~~~~~~F~Sy---~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsH 264 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSY---EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSH 264 (342)
T ss_dssp --EEETTTTEEEEEBT---TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-T
T ss_pred ccceECCCCeEEEEec---CCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCc
Confidence 4566777788888876 4789999998887544332 2234456778777777766542 22223
Q ss_pred CCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee
Q 039497 399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ 478 (642)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~ 478 (642)
.+...+||.++. + .++ .+.++.... ...++.+|.|.+-++|+... +...|+++|..+|+. +..
T Consensus 265 KdpgteVWv~D~--~-----t~k----rv~Ri~l~~--~~~Si~Vsqd~~P~L~~~~~-~~~~l~v~D~~tGk~---~~~ 327 (342)
T PF06433_consen 265 KDPGTEVWVYDL--K-----THK----RVARIPLEH--PIDSIAVSQDDKPLLYALSA-GDGTLDVYDAATGKL---VRS 327 (342)
T ss_dssp TS-EEEEEEEET--T-----TTE----EEEEEEEEE--EESEEEEESSSS-EEEEEET-TTTEEEEEETTT--E---EEE
T ss_pred cCCceEEEEEEC--C-----CCe----EEEEEeCCC--ccceEEEccCCCcEEEEEcC-CCCeEEEEeCcCCcE---Eee
Confidence 467788999988 3 221 444444332 45578999999978776533 345899999999986 454
Q ss_pred CC
Q 039497 479 LT 480 (642)
Q Consensus 479 l~ 480 (642)
+.
T Consensus 328 ~~ 329 (342)
T PF06433_consen 328 IE 329 (342)
T ss_dssp E-
T ss_pred hh
Confidence 44
No 201
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=5.3e-06 Score=90.16 Aligned_cols=288 Identities=15% Similarity=0.147 Sum_probs=159.9
Q ss_pred ceeCCCCc-EEEEEecCCCCCCCCC-CCCeeeEEEEEecCCCc--eeEeec---CC-CcceEeeCCeE---EEEEecCCC
Q 039497 145 PSVSYSGK-FIAVASYESRPWPGEF-HELNTDIVVFQESDPNK--RVIVCE---RG-GWPTWSGDSTI---YFHRQADDG 213 (642)
Q Consensus 145 ~~~SPDG~-~la~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~--~~l~~~---~~-~~~~wspdg~~---~~~~~~~~g 213 (642)
.+|||+++ ++|...... ...... .....+||..+..+++. +.+... .. .-++|.+-|.. ++....++|
T Consensus 12 ~awSp~~~~~laagt~aq-~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG 90 (1049)
T KOG0307|consen 12 FAWSPASPPLLAAGTAAQ-QFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG 90 (1049)
T ss_pred EEecCCCchhhHHHhhhh-ccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence 57899886 344222111 111111 12455777777766653 222221 11 34699887733 344446789
Q ss_pred ceEEEEEec--CCCcccccCCccceeeCCCCCccccceeecCCc-EEEEEEeccCCceeeEEEEEeecCCCCcccCCeec
Q 039497 214 WWSIFRVSF--PENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGK-RLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVS 290 (642)
Q Consensus 214 ~~~l~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~-~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~s 290 (642)
...+|..+. .+... +...+...+...+..+.|.+... .|+. |....+|++||+...... ++
T Consensus 91 ~I~ly~p~~~~~~~~~-----~~la~~~~h~G~V~gLDfN~~q~nlLAS-----Ga~~geI~iWDlnn~~tP------~~ 154 (1049)
T KOG0307|consen 91 NIVLYDPASIIANASE-----EVLATKSKHTGPVLGLDFNPFQGNLLAS-----GADDGEILIWDLNKPETP------FT 154 (1049)
T ss_pred ceEEecchhhccCcch-----HHHhhhcccCCceeeeeccccCCceeec-----cCCCCcEEEeccCCcCCC------CC
Confidence 777776654 23310 01122234455677788888776 5555 344559999999321100 00
Q ss_pred CCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCe-eEE
Q 039497 291 ANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR-WTL 369 (642)
Q Consensus 291 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~-~~l 369 (642)
+.+ -..... ...++|+..-.+|+-.... .+...++|+...+. ..+
T Consensus 155 ~~~-------------------------~~~~~e-------I~~lsWNrkvqhILAS~s~--sg~~~iWDlr~~~pii~l 200 (1049)
T KOG0307|consen 155 PGS-------------------------QAPPSE-------IKCLSWNRKVSHILASGSP--SGRAVIWDLRKKKPIIKL 200 (1049)
T ss_pred CCC-------------------------CCCccc-------ceEeccchhhhHHhhccCC--CCCceeccccCCCccccc
Confidence 000 000011 1123454443333332222 23444556655532 222
Q ss_pred ee---cCCceeeeeecCCC-EEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECC
Q 039497 370 IK---DRTAFYNSWSPTEK-HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP 445 (642)
Q Consensus 370 ~~---~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp 445 (642)
.. ......+.|.||.. +|+..+.. .....+.+|++.. . .. ..+.+..+. ..+..+.|.+
T Consensus 201 s~~~~~~~~S~l~WhP~~aTql~~As~d----d~~PviqlWDlR~--a-----ss-----P~k~~~~H~-~GilslsWc~ 263 (1049)
T KOG0307|consen 201 SDTPGRMHCSVLAWHPDHATQLLVASGD----DSAPVIQLWDLRF--A-----SS-----PLKILEGHQ-RGILSLSWCP 263 (1049)
T ss_pred ccCCCccceeeeeeCCCCceeeeeecCC----CCCceeEeecccc--c-----CC-----chhhhcccc-cceeeeccCC
Confidence 22 23467899999875 45555532 3356788999876 2 11 556666666 6777899999
Q ss_pred CCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCC-EEEEEecCC
Q 039497 446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD-LIAFSSNRH 505 (642)
Q Consensus 446 Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~-~l~~~~~~~ 505 (642)
.+..++.++.+++ +|+.|+.++|+. +-.+.........+.|.|..- .++..+-++
T Consensus 264 ~D~~lllSsgkD~--~ii~wN~~tgEv---l~~~p~~~nW~fdv~w~pr~P~~~A~asfdg 319 (1049)
T KOG0307|consen 264 QDPRLLLSSGKDN--RIICWNPNTGEV---LGELPAQGNWCFDVQWCPRNPSVMAAASFDG 319 (1049)
T ss_pred CCchhhhcccCCC--CeeEecCCCceE---eeecCCCCcceeeeeecCCCcchhhhheecc
Confidence 8878888887654 899999999987 677776555567789998665 555555554
No 202
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=98.31 E-value=0.00038 Score=64.65 Aligned_cols=160 Identities=11% Similarity=0.136 Sum_probs=102.0
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCC--EEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEK--HVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
...|-|=.+-++..+ .-...|-++|..+-+...... .+.+..-+|||-.. -|+.+. ..+..++++++..
T Consensus 106 s~~WyP~DtGmFtss--SFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~g------tr~~~VrLCDi~S 177 (397)
T KOG4283|consen 106 SAIWYPIDTGMFTSS--SFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAG------TRDVQVRLCDIAS 177 (397)
T ss_pred eeEEeeecCceeecc--cccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEe------cCCCcEEEEeccC
Confidence 345655433333322 224567778887766544433 67788888888543 344343 3478999999976
Q ss_pred ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC--CCcc----------ccceee
Q 039497 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV--NGEF----------NGDIRQ 478 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~--~g~~----------~~~~~~ 478 (642)
|. -...|..+. ..+..+.|||...|++++..-+| .+.+||+. +|-. +-.++.
T Consensus 178 --------Gs-----~sH~LsGHr-~~vlaV~Wsp~~e~vLatgsaDg--~irlWDiRrasgcf~~lD~hn~k~~p~~~~ 241 (397)
T KOG4283|consen 178 --------GS-----FSHTLSGHR-DGVLAVEWSPSSEWVLATGSADG--AIRLWDIRRASGCFRVLDQHNTKRPPILKT 241 (397)
T ss_pred --------Cc-----ceeeecccc-CceEEEEeccCceeEEEecCCCc--eEEEEEeecccceeEEeecccCccCccccc
Confidence 33 556667776 77888999999999999887666 44444543 2221 000111
Q ss_pred CCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce
Q 039497 479 LTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL 525 (642)
Q Consensus 479 l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~ 525 (642)
-+.+.+.+...+|+.||++++....+.. +.+|+...|+-
T Consensus 242 n~ah~gkvngla~tSd~~~l~~~gtd~r--------~r~wn~~~G~n 280 (397)
T KOG4283|consen 242 NTAHYGKVNGLAWTSDARYLASCGTDDR--------IRVWNMESGRN 280 (397)
T ss_pred cccccceeeeeeecccchhhhhccCccc--------eEEeecccCcc
Confidence 1233455677899999999988776654 78888876654
No 203
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.28 E-value=1.8e-05 Score=75.35 Aligned_cols=170 Identities=14% Similarity=0.142 Sum_probs=110.0
Q ss_pred eeEEEEECCCCCee-EEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497 354 AGIKIAKSDGSKRW-TLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT 431 (642)
Q Consensus 354 ~~l~~~d~~~~~~~-~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 431 (642)
.+|-++|..-..+. .+.. ...+..+.|+|....|+.+.. .+..+.||++.. +. ..+.+.
T Consensus 167 e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~------sDrsIvLyD~R~--------~~-----Pl~KVi 227 (433)
T KOG0268|consen 167 EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA------SDRSIVLYDLRQ--------AS-----PLKKVI 227 (433)
T ss_pred ceeeecccccCCccceeecCCCceeEEecCCCcchheeeec------cCCceEEEeccc--------CC-----ccceee
Confidence 45556665433332 2322 556789999999888877763 478888999876 22 334443
Q ss_pred ccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC-CCCCCcccceeEecCCCEEEEEecCCCCCCC
Q 039497 432 KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL-TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV 510 (642)
Q Consensus 432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l-~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~ 510 (642)
.. ..-..+.|+|. -+.+.+.+ .+..||.+|...-+. +..+ ..+...+..+.|||-|+-++..+-+..
T Consensus 228 ~~--mRTN~IswnPe-afnF~~a~--ED~nlY~~DmR~l~~---p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks---- 295 (433)
T KOG0268|consen 228 LT--MRTNTICWNPE-AFNFVAAN--EDHNLYTYDMRNLSR---PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS---- 295 (433)
T ss_pred ee--ccccceecCcc-ccceeecc--ccccceehhhhhhcc---cchhhcccceeEEEeccCCCcchhccccccce----
Confidence 32 24456899993 33333333 445899999864332 1222 223335677899999999998887764
Q ss_pred CceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCc
Q 039497 511 EAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV 565 (642)
Q Consensus 511 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~ 565 (642)
|.++....+..+.+-...--. .+..+.||.|.++|+-.+++++.
T Consensus 296 ----IRIf~~~~~~SRdiYhtkRMq-------~V~~Vk~S~Dskyi~SGSdd~nv 339 (433)
T KOG0268|consen 296 ----IRIFPVNHGHSRDIYHTKRMQ-------HVFCVKYSMDSKYIISGSDDGNV 339 (433)
T ss_pred ----EEEeecCCCcchhhhhHhhhh-------eeeEEEEeccccEEEecCCCcce
Confidence 788888777766554322111 46789999999999888887644
No 204
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=98.28 E-value=5.2e-05 Score=82.17 Aligned_cols=134 Identities=13% Similarity=0.146 Sum_probs=87.3
Q ss_pred cceEEEEeecCCceeeeEEEecCCCCCCCCCceeee-cCCceeeeeceecCCCCCeEEE-EEccC--CCcceEEEc--CC
Q 039497 4 KGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRL-TDGTSINFNAQFVDGQDQTIAF-ISERS--GSPRIYQTR--PG 77 (642)
Q Consensus 4 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rl-t~~~~~~~~~~~S~pDG~~laf-~~~~~--g~~~l~~~~--~~ 77 (642)
..+|||+.+ ..+.|.+++..| ..++++ +.+....++|.|| |||++||| ++-.. |...||+.+ ..
T Consensus 318 ~tkiAfv~~----~~~~L~~~D~dG-----~n~~~ve~~~~~~i~sP~~S-PDG~~vAY~ts~e~~~g~s~vYv~~L~t~ 387 (912)
T TIGR02171 318 KAKLAFRND----VTGNLAYIDYTK-----GASRAVEIEDTISVYHPDIS-PDGKKVAFCTGIEGLPGKSSVYVRNLNAS 387 (912)
T ss_pred eeeEEEEEc----CCCeEEEEecCC-----CCceEEEecCCCceecCcCC-CCCCEEEEEEeecCCCCCceEEEEehhcc
Confidence 368999965 234999999999 899999 8999999999999 99999999 66655 688899983 33
Q ss_pred CCcccccCCCCCCcccccccc-CC-CEEEEEEeccCCC--cccccccceEEEEccCC---ceEecccCCCccCCceeCCC
Q 039497 78 SSKTELLPSIPCSLFHDRPVA-RN-NKLFFISAHEQPD--QIFKSWSALYSTDLKAS---KFTRLTPYGVVDYSPSVSYS 150 (642)
Q Consensus 78 g~~~~~~~~~~~~~~~~~~~~-~~-~~l~~~~~~~~~~--~~~~~~~~l~~~~~~~~---~~~~lt~~~~~~~~~~~SPD 150 (642)
|..+..|.. +.+...+.... .| ..|+|++...... ..+... .-|.++-..| +++.|..+..+ --+|-|
T Consensus 388 ~~~~vkl~v-e~aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~-stw~v~f~~gkfg~p~kl~dga~h---ggvs~~ 462 (912)
T TIGR02171 388 GSGLVKLPV-ENAAIPRWRVLENGDTVIVYVSDASNNKDDATFAAY-STWQVPFANGKFGTPKKLFDGAYH---GGVSED 462 (912)
T ss_pred CCCceEeec-ccccccceEecCCCCeEEEEEcCCCCCcchhhhhhc-ceEEEEecCCCCCCchhhhccccc---cccccC
Confidence 433333433 23333333333 33 3577877644221 122222 5788887664 57777755332 234655
Q ss_pred Cc
Q 039497 151 GK 152 (642)
Q Consensus 151 G~ 152 (642)
.+
T Consensus 463 ~~ 464 (912)
T TIGR02171 463 LN 464 (912)
T ss_pred Cc
Confidence 54
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.28 E-value=5.2e-05 Score=77.67 Aligned_cols=216 Identities=14% Similarity=0.121 Sum_probs=124.0
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecC
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD 413 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 413 (642)
..+||.||++++..+. ...+.+++.+-...-...+...+..+.|.|-...|+.++. +..-+|..+. +
T Consensus 58 cVAys~dGkrFASG~a---DK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsL--------sdFglWS~~q--K 124 (1081)
T KOG1538|consen 58 CVAYAKDGKRFASGSA---DKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSL--------SDFGLWSPEQ--K 124 (1081)
T ss_pred EEEEccCCceeccCCC---ceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcch--------hhccccChhh--h
Confidence 4589999998766332 2334444433222223333667888999999888888773 3445666543 1
Q ss_pred CCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC---CCCccccee
Q 039497 414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD---GPWIDTMPS 490 (642)
Q Consensus 414 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~---~~~~~~~~~ 490 (642)
....-.. . ......+|..||++++..- ++..|-+-+. +|+. -..|.. ....+.+++
T Consensus 125 ------------~V~K~ks-s-~R~~~CsWtnDGqylalG~---~nGTIsiRNk-~gEe---k~~I~Rpgg~Nspiwsi~ 183 (1081)
T KOG1538|consen 125 ------------SVSKHKS-S-SRIICCSWTNDGQYLALGM---FNGTISIRNK-NGEE---KVKIERPGGSNSPIWSIC 183 (1081)
T ss_pred ------------hHHhhhh-h-eeEEEeeecCCCcEEEEec---cCceEEeecC-CCCc---ceEEeCCCCCCCCceEEE
Confidence 1111111 1 3556789999999998765 3345655554 4664 223332 223445566
Q ss_pred EecCCC-----EEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCc
Q 039497 491 WSPKGD-----LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV 565 (642)
Q Consensus 491 ~spdG~-----~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~ 565 (642)
|+|... .+++..- ...|-.+.++|.....-...+. .+..+++-++|.+++....++
T Consensus 184 ~~p~sg~G~~di~aV~DW--------~qTLSFy~LsG~~Igk~r~L~F---------dP~CisYf~NGEy~LiGGsdk-- 244 (1081)
T KOG1538|consen 184 WNPSSGEGRNDILAVADW--------GQTLSFYQLSGKQIGKDRALNF---------DPCCISYFTNGEYILLGGSDK-- 244 (1081)
T ss_pred ecCCCCCCccceEEEEec--------cceeEEEEecceeecccccCCC---------CchhheeccCCcEEEEccCCC--
Confidence 666432 1222211 1124444444432221111111 234577789999999887765
Q ss_pred ccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEee
Q 039497 566 MAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 566 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~ 617 (642)
.|..+..+|-.+-.+.....++.++...|++|+++-.
T Consensus 245 ---------------~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~G 281 (1081)
T KOG1538|consen 245 ---------------QLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVG 281 (1081)
T ss_pred ---------------ceEEEeecCeEEeeccccceeEEEEEEccCCceEEEE
Confidence 6777777776666666666677889999999998433
No 206
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.28 E-value=2.9e-05 Score=81.04 Aligned_cols=201 Identities=15% Similarity=0.098 Sum_probs=129.4
Q ss_pred ccEEcC-CCCEEEEEecCCCceeEEEEECCCC-CeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497 334 FPSFSP-DGGLIVFNHDFELNAGIKIAKSDGS-KRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR 407 (642)
Q Consensus 334 ~~~~sp-dg~~l~~~~~~~~~~~l~~~d~~~~-~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~ 407 (642)
...|.. +.+.|+..+ ..+.|-++|+... ...+++. ...+..+.|++-.-.+++.. ..++.+++|+
T Consensus 92 DVkW~~~~~NlIAT~s---~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSG------SQDg~vK~~D 162 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATCS---TNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISG------SQDGTVKCWD 162 (839)
T ss_pred hcccccchhhhheeec---CCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEec------CCCceEEEEe
Confidence 445543 334454443 2456666676542 1122222 45678889999887777776 4589999999
Q ss_pred EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccc
Q 039497 408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT 487 (642)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~ 487 (642)
+.. + . ......... ..+..+.|||--...+++..++| .|-+||+..-.. ...+++.+.+.+.
T Consensus 163 lR~--~------~-----S~~t~~~nS-ESiRDV~fsp~~~~~F~s~~dsG--~lqlWDlRqp~r--~~~k~~AH~GpV~ 224 (839)
T KOG0269|consen 163 LRS--K------K-----SKSTFRSNS-ESIRDVKFSPGYGNKFASIHDSG--YLQLWDLRQPDR--CEKKLTAHNGPVL 224 (839)
T ss_pred eec--c------c-----ccccccccc-hhhhceeeccCCCceEEEecCCc--eEEEeeccCchh--HHHHhhcccCceE
Confidence 987 3 1 112222222 57888999996544445555555 677788763321 2567888888888
Q ss_pred ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA 567 (642)
Q Consensus 488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~ 567 (642)
.+.|+|++.+|+..+.+.. +.+|++.+.+...+..-.... ++..+.|-|+-.+.+.++.-...
T Consensus 225 c~nwhPnr~~lATGGRDK~--------vkiWd~t~~~~~~~~tInTia-------pv~rVkWRP~~~~hLAtcsmv~d-- 287 (839)
T KOG0269|consen 225 CLNWHPNREWLATGGRDKM--------VKIWDMTDSRAKPKHTINTIA-------PVGRVKWRPARSYHLATCSMVVD-- 287 (839)
T ss_pred EEeecCCCceeeecCCCcc--------EEEEeccCCCccceeEEeecc-------eeeeeeeccCccchhhhhhcccc--
Confidence 9999999999998886654 899999876554433222222 56789999998876555443322
Q ss_pred CCCCCCCCCCCCCcEEEEEcCCC
Q 039497 568 EPVSWPNQFQPYGDLYVVKLDGS 590 (642)
Q Consensus 568 ~~~~~~~~~~~~~~l~~~~~~~~ 590 (642)
..|++||+...
T Consensus 288 ------------tsV~VWDvrRP 298 (839)
T KOG0269|consen 288 ------------TSVHVWDVRRP 298 (839)
T ss_pred ------------ceEEEEeeccc
Confidence 28999998764
No 207
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=98.27 E-value=0.00039 Score=67.05 Aligned_cols=172 Identities=17% Similarity=0.208 Sum_probs=105.4
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (642)
..+++|+||+.++++....+...|++....+.. ..+........+.|+++|. +++.... .....++....
T Consensus 27 ~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~-~~~~~g~~l~~PS~d~~g~-~W~v~~~------~~~~~~~~~~~-- 96 (253)
T PF10647_consen 27 TSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV-RPVLTGGSLTRPSWDPDGW-VWTVDDG------SGGVRVVRDSA-- 96 (253)
T ss_pred cceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc-eeeccCCccccccccCCCC-EEEEEcC------CCceEEEEecC--
Confidence 467999999999998855667889998865544 4443555788999999966 4444421 33444443212
Q ss_pred CCCCCCCCCccccceEEccccCCC-CccCcEECCCCCeEEEEeCCCCceeEEEEECC---CCccc--cceeeCC-CCCCc
Q 039497 413 DPSDDNNREEIPCDVKILTKEETG-NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV---NGEFN--GDIRQLT-DGPWI 485 (642)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~---~g~~~--~~~~~l~-~~~~~ 485 (642)
.+.. ....+...... .+..+.+||||.++++.....+..+|++.-+. .|... .....+. .....
T Consensus 97 ------~g~~---~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~ 167 (253)
T PF10647_consen 97 ------SGTG---EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSD 167 (253)
T ss_pred ------CCcc---eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCc
Confidence 1111 23333332212 57789999999999999977677788877553 33110 0011222 22335
Q ss_pred ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEee
Q 039497 486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH 529 (642)
Q Consensus 486 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 529 (642)
+..+.|.+++..++....... .... .+..+++..+.+.
T Consensus 168 v~~v~W~~~~~L~V~~~~~~~-----~~~~-~v~~dG~~~~~l~ 205 (253)
T PF10647_consen 168 VTDVAWSDDSTLVVLGRSAGG-----PVVR-LVSVDGGPSTPLP 205 (253)
T ss_pred ceeeeecCCCEEEEEeCCCCC-----ceeE-EEEccCCcccccC
Confidence 567899999986666655442 1112 4677777776663
No 208
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.26 E-value=6.7e-05 Score=76.93 Aligned_cols=255 Identities=12% Similarity=0.106 Sum_probs=152.4
Q ss_pred cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEE
Q 039497 195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIY 274 (642)
Q Consensus 195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~ 274 (642)
..+|-|||.-++.+. +. .++.+|+..|. ....+..+..-+..+++|.||++++. |+....+-+|
T Consensus 17 d~afkPDGsqL~lAA--g~--rlliyD~ndG~-------llqtLKgHKDtVycVAys~dGkrFAS-----G~aDK~VI~W 80 (1081)
T KOG1538|consen 17 DIAFKPDGTQLILAA--GS--RLLVYDTSDGT-------LLQPLKGHKDTVYCVAYAKDGKRFAS-----GSADKSVIIW 80 (1081)
T ss_pred eeEECCCCceEEEec--CC--EEEEEeCCCcc-------cccccccccceEEEEEEccCCceecc-----CCCceeEEEe
Confidence 479999995444431 22 78888887764 66778888777889999999999887 5556678888
Q ss_pred Eee------cCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEe
Q 039497 275 DLT------LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH 348 (642)
Q Consensus 275 d~~------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 348 (642)
..+ ..+...++...+.|=.+.|+..+...- -+|...-+ .+.... .......-+|..||++++..-
T Consensus 81 ~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdF-------glWS~~qK-~V~K~k-ss~R~~~CsWtnDGqylalG~ 151 (1081)
T KOG1538|consen 81 TSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDF-------GLWSPEQK-SVSKHK-SSSRIICCSWTNDGQYLALGM 151 (1081)
T ss_pred cccccceeeeccCCeeeEeecCchHHHhhhcchhhc-------cccChhhh-hHHhhh-hheeEEEeeecCCCcEEEEec
Confidence 773 234445556667776666665532211 11111100 000000 001112458999999888853
Q ss_pred cCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCC-----EEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCC
Q 039497 349 DFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEK-----HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNN 419 (642)
Q Consensus 349 ~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~-----~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 419 (642)
..+.|-+.+..+.+...+.. +..+.++.|+|... .++++.. ..++.++.++.
T Consensus 152 ---~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW-------~qTLSFy~LsG--------- 212 (1081)
T KOG1538|consen 152 ---FNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW-------GQTLSFYQLSG--------- 212 (1081)
T ss_pred ---cCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec-------cceeEEEEecc---------
Confidence 34566666765555444443 45677888888632 4455443 45666666632
Q ss_pred CCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEE
Q 039497 420 REEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499 (642)
Q Consensus 420 ~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~ 499 (642)
..+. +.+.|. .....+++-|+|.+++..... ..|.++.-+ |-. +-.+......++.++..|+|++++
T Consensus 213 -~~Ig-k~r~L~----FdP~CisYf~NGEy~LiGGsd---k~L~~fTR~-Gvr---LGTvg~~D~WIWtV~~~PNsQ~v~ 279 (1081)
T KOG1538|consen 213 -KQIG-KDRALN----FDPCCISYFTNGEYILLGGSD---KQLSLFTRD-GVR---LGTVGEQDSWIWTVQAKPNSQYVV 279 (1081)
T ss_pred -eeec-ccccCC----CCchhheeccCCcEEEEccCC---CceEEEeec-CeE---EeeccccceeEEEEEEccCCceEE
Confidence 1100 122222 123346788999999877643 245555433 443 445555555677889999999999
Q ss_pred EEecCCC
Q 039497 500 FSSNRHN 506 (642)
Q Consensus 500 ~~~~~~~ 506 (642)
....+++
T Consensus 280 ~GCqDGT 286 (1081)
T KOG1538|consen 280 VGCQDGT 286 (1081)
T ss_pred EEEccCe
Confidence 8888765
No 209
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.26 E-value=1.4e-05 Score=75.98 Aligned_cols=169 Identities=9% Similarity=0.077 Sum_probs=110.8
Q ss_pred CCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC
Q 039497 400 RATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL 479 (642)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l 479 (642)
...+.||+... + . ..+.+..+. ..+..+.|+|-...|+..... +..|+++|+.++.+ ++.+
T Consensus 166 Ge~i~IWD~~R--~------~-----Pv~smswG~-Dti~svkfNpvETsILas~~s--DrsIvLyD~R~~~P---l~KV 226 (433)
T KOG0268|consen 166 GEQIDIWDEQR--D------N-----PVSSMSWGA-DSISSVKFNPVETSILASCAS--DRSIVLYDLRQASP---LKKV 226 (433)
T ss_pred Cceeeeccccc--C------C-----ccceeecCC-CceeEEecCCCcchheeeecc--CCceEEEecccCCc---ccee
Confidence 56789999865 2 2 556666655 456778999988877665532 23799999998876 5555
Q ss_pred CCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce-EEeeecCCCCCCCcccccccceEEcCCCCEEEE
Q 039497 480 TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL-RRIHVAGPEGSGDVDRERINHVCFSADGEWLLF 558 (642)
Q Consensus 480 ~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~ 558 (642)
.-. ..-+.++|+|++- .+..++. ...||.+|+..-+. ..+.. ++.. -+.++.|||-|+-++.
T Consensus 227 i~~-mRTN~IswnPeaf-nF~~a~E-------D~nlY~~DmR~l~~p~~v~~-dhvs-------AV~dVdfsptG~Efvs 289 (433)
T KOG0268|consen 227 ILT-MRTNTICWNPEAF-NFVAANE-------DHNLYTYDMRNLSRPLNVHK-DHVS-------AVMDVDFSPTGQEFVS 289 (433)
T ss_pred eee-ccccceecCcccc-ceeeccc-------cccceehhhhhhcccchhhc-ccce-------eEEEeccCCCcchhcc
Confidence 432 2345789999553 3333332 23499999864322 22222 3333 4678999999999988
Q ss_pred EEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCC--CCCCCcEEecCCceEEeecCCC
Q 039497 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNG--YENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~--~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
.+-+. .|-.+..+.+.-+-+.... -.+..+.||.|++|+++..+.+
T Consensus 290 gsyDk-----------------sIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~ 337 (433)
T KOG0268|consen 290 GSYDK-----------------SIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDG 337 (433)
T ss_pred ccccc-----------------eEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCc
Confidence 77665 4555566665555444332 2357889999999999877665
No 210
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.25 E-value=6.3e-05 Score=75.38 Aligned_cols=140 Identities=15% Similarity=0.143 Sum_probs=89.3
Q ss_pred CccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeec--CCCCEEEEEEeecCCCCCCcccceEeeccC
Q 039497 243 VHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVS--ANSEFIGYHRFRGESTEGQSTIPHLEPVAS 320 (642)
Q Consensus 243 ~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~s--pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 320 (642)
..+..+.|-|.++.++.+....+ .+++||.... .....|.|+ +++..+.......... ..
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sG----nlyly~~~~~--~~~t~p~~~~~k~~~~f~i~t~ksk~~------------rN 281 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASG----NLYLYDKEIV--CGATAPSYQALKDGDQFAILTSKSKKT------------RN 281 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecC----ceEEeecccc--ccCCCCcccccCCCCeeEEeeeecccc------------CC
Confidence 35666778777766666656554 7888887332 223333333 4666555543322211 01
Q ss_pred CCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCccc
Q 039497 321 PVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQS 398 (642)
Q Consensus 321 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~ 398 (642)
+.............+.|||||++||.++.+ .-|.+++.++.+..-+.. -+....+.|||||++|+...
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqD---GfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGG------- 351 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQD---GFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGG------- 351 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecC---ceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecC-------
Confidence 222223333344567999999999999863 677788887766554444 56778999999999998875
Q ss_pred CCCeEEEEEEEe
Q 039497 399 ERATVQIARVSF 410 (642)
Q Consensus 399 ~~~~~~l~~~~~ 410 (642)
++.-+.+|.+..
T Consensus 352 EDDLVtVwSf~e 363 (636)
T KOG2394|consen 352 EDDLVTVWSFEE 363 (636)
T ss_pred CcceEEEEEecc
Confidence 367788998865
No 211
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00011 Score=66.36 Aligned_cols=211 Identities=12% Similarity=0.109 Sum_probs=127.0
Q ss_pred ceEEEEccCC--ceEecccCCCccCCceeCC--CCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecC----
Q 039497 121 ALYSTDLKAS--KFTRLTPYGVVDYSPSVSY--SGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCER---- 192 (642)
Q Consensus 121 ~l~~~~~~~~--~~~~lt~~~~~~~~~~~SP--DG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~---- 192 (642)
.|+.+...++ ....|+.+.+.....+|.. -|..||..++++ .|.+|.-++|...+.....
T Consensus 36 kIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDg------------kVIiWke~~g~w~k~~e~~~h~~ 103 (299)
T KOG1332|consen 36 KIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDG------------KVIIWKEENGRWTKAYEHAAHSA 103 (299)
T ss_pred EEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCc------------eEEEEecCCCchhhhhhhhhhcc
Confidence 3454443332 2344555555555566655 699999998877 6889999998766655422
Q ss_pred -CCcceEeeCC--eEEEEEecCCCceEEEEEecCCCcccccCCccceee-CCCCCccccceeecC---C-----------
Q 039497 193 -GGWPTWSGDS--TIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRV-TPPGVHCFTPAAFHD---G----------- 254 (642)
Q Consensus 193 -~~~~~wspdg--~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~Spd---G----------- 254 (642)
...++|.|.+ .+|+.+ ..||...|..++..++- ...++ ..+...+..+.|.|- |
T Consensus 104 SVNsV~wapheygl~Laca-sSDG~vsvl~~~~~g~w-------~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~ 175 (299)
T KOG1332|consen 104 SVNSVAWAPHEYGLLLACA-SSDGKVSVLTYDSSGGW-------TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKV 175 (299)
T ss_pred cceeecccccccceEEEEe-eCCCcEEEEEEcCCCCc-------cchhhhhccccccceeeecCcCCCccccccCccccc
Confidence 1356898887 466666 67899999998887542 22333 344555777777665 5
Q ss_pred cEEEEEEeccCCceeeEEEEEee----------cCCCCcccCCeecCCC----CEEEEEEeecCCCCCCcccceEeeccC
Q 039497 255 KRLAVATRRKNRNFRHIEIYDLT----------LNPNFHHYNPFVSANS----EFIGYHRFRGESTEGQSTIPHLEPVAS 320 (642)
Q Consensus 255 ~~l~~~~~~~~~~~~~i~~~d~~----------~~~~~~~~~~~~spDg----~~l~~~~~~~~~~~~~~~~~~~~~~~~ 320 (642)
++|+. ++....+.+|+.. .++...+++.+|.|.- ..|+..+.++. .++|....+.
T Consensus 176 krlvS-----gGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~------viIwt~~~e~ 244 (299)
T KOG1332|consen 176 KRLVS-----GGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT------VIIWTKDEEY 244 (299)
T ss_pred ceeec-----cCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc------EEEEEecCcc
Confidence 44544 4556678888772 2445556777888743 23555554444 4455444332
Q ss_pred CCceeEEe-eeC--CCccEEcCCCCEEEEEecCCCceeEEEEECCC
Q 039497 321 PVKELRML-RLN--GSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG 363 (642)
Q Consensus 321 ~~~~~~~~-~~~--~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~ 363 (642)
..-+.++. .+. ....+||..|+.|+.... +++..||.-++++
T Consensus 245 e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~G-dNkvtlwke~~~G 289 (299)
T KOG1332|consen 245 EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGG-DNKVTLWKENVDG 289 (299)
T ss_pred CcccccccccCCcceEEEEEeccccEEEEecC-CcEEEEEEeCCCC
Confidence 21111111 122 245689999997777543 5566677666654
No 212
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.00031 Score=63.60 Aligned_cols=188 Identities=13% Similarity=0.105 Sum_probs=106.7
Q ss_pred CCCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCC
Q 039497 340 DGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS 415 (642)
Q Consensus 340 dg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 415 (642)
-|..|+-.+. + .++.++.-.++...+... ...+.++.|.|.+--+..... ..++.+.+..++. +
T Consensus 69 ~G~iLAScsY-D--gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Laca-----sSDG~vsvl~~~~--~-- 136 (299)
T KOG1332|consen 69 FGTILASCSY-D--GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACA-----SSDGKVSVLTYDS--S-- 136 (299)
T ss_pred cCcEeeEeec-C--ceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEe-----eCCCcEEEEEEcC--C--
Confidence 4777776665 2 456666666665444332 567889999998654443332 2478999988877 3
Q ss_pred CCCCCCccccceEEccccCCCCccCcEECCC---C-----------CeEEEEeCCCCceeEEEEECCCCccccceeeCCC
Q 039497 416 DDNNREEIPCDVKILTKEETGNNAFPSCSPD---G-----------KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD 481 (642)
Q Consensus 416 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD---g-----------~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~ 481 (642)
++. ....+.......+..+.|.|- | ++|+.... +..+-+|..+.++. .....|..
T Consensus 137 ---g~w----~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGc---Dn~VkiW~~~~~~w-~~e~~l~~ 205 (299)
T KOG1332|consen 137 ---GGW----TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGC---DNLVKIWKFDSDSW-KLERTLEG 205 (299)
T ss_pred ---CCc----cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCC---ccceeeeecCCcch-hhhhhhhh
Confidence 232 233333322256677888875 4 34443322 23455555555443 11234777
Q ss_pred CCCcccceeEecCC----CEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEE
Q 039497 482 GPWIDTMPSWSPKG----DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL 557 (642)
Q Consensus 482 ~~~~~~~~~~spdG----~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~ 557 (642)
+...+..++|.|.- ..|+-.+.++ ..-||..+.+.+..+.-....... .+..++||..|..|+
T Consensus 206 H~dwVRDVAwaP~~gl~~s~iAS~SqDg------~viIwt~~~e~e~wk~tll~~f~~-------~~w~vSWS~sGn~La 272 (299)
T KOG1332|consen 206 HKDWVRDVAWAPSVGLPKSTIASCSQDG------TVIIWTKDEEYEPWKKTLLEEFPD-------VVWRVSWSLSGNILA 272 (299)
T ss_pred cchhhhhhhhccccCCCceeeEEecCCC------cEEEEEecCccCcccccccccCCc-------ceEEEEEeccccEEE
Confidence 77778888999854 2344444443 333444443333222111112222 568899999999998
Q ss_pred EEEecC
Q 039497 558 FTANLG 563 (642)
Q Consensus 558 ~~~~~~ 563 (642)
+...+.
T Consensus 273 Vs~GdN 278 (299)
T KOG1332|consen 273 VSGGDN 278 (299)
T ss_pred EecCCc
Confidence 887765
No 213
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=98.23 E-value=1.7e-06 Score=56.26 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=31.8
Q ss_pred eeecCCceeeeeceecCCCCCeEEEEEccC--CCcceEE
Q 039497 37 HRLTDGTSINFNAQFVDGQDQTIAFISERS--GSPRIYQ 73 (642)
Q Consensus 37 ~rlt~~~~~~~~~~~S~pDG~~laf~~~~~--g~~~l~~ 73 (642)
+|||...+.+..|.|| |||++|+|++.+. |..+||+
T Consensus 2 ~~~t~~~~~~~~p~~S-pDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWS-PDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEES-SSSSEEEEEE--TTSSEEEEEEECT--SSEEEEE
T ss_pred cCcccCCccccCEEEe-cCCCEEEEEecCCCCCCcCEEC
Confidence 6899999999999999 9999999999999 8899985
No 214
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.21 E-value=0.0026 Score=67.94 Aligned_cols=153 Identities=16% Similarity=0.082 Sum_probs=101.1
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR 407 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~ 407 (642)
.+..++.|...+.+.. ..++++....+....... ...+...++||+++.++.... ++++.+|.
T Consensus 165 ~I~~~~~ge~~~i~~~----~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~-------dGrI~vw~ 233 (792)
T KOG1963|consen 165 SIVDNNSGEFKGIVHM----CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDS-------DGRILVWR 233 (792)
T ss_pred cEEEcCCceEEEEEEe----eeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEecc-------CCcEEEEe
Confidence 3466777775555442 456666665544111111 112456899999999987763 57788886
Q ss_pred EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccc
Q 039497 408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT 487 (642)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~ 487 (642)
--.. + +.. ...+.+.-+. ..+..++||+||.+|+-.. +. .-|.+|.+.+++. +-|......+.
T Consensus 234 d~~~-~-----~~~---~t~t~lHWH~-~~V~~L~fS~~G~~LlSGG-~E--~VLv~Wq~~T~~k----qfLPRLgs~I~ 296 (792)
T KOG1963|consen 234 DFGS-S-----DDS---ETCTLLHWHH-DEVNSLSFSSDGAYLLSGG-RE--GVLVLWQLETGKK----QFLPRLGSPIL 296 (792)
T ss_pred cccc-c-----ccc---ccceEEEecc-cccceeEEecCCceEeecc-cc--eEEEEEeecCCCc----ccccccCCeeE
Confidence 3110 0 011 1566777776 6788899999999987543 33 3788888888884 77777777888
Q ss_pred ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG 522 (642)
Q Consensus 488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~ 522 (642)
++.+|||+...+....++. |.++....
T Consensus 297 ~i~vS~ds~~~sl~~~DNq--------I~li~~~d 323 (792)
T KOG1963|consen 297 HIVVSPDSDLYSLVLEDNQ--------IHLIKASD 323 (792)
T ss_pred EEEEcCCCCeEEEEecCce--------EEEEeccc
Confidence 9999999998777766543 67666543
No 215
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.19 E-value=0.00075 Score=63.11 Aligned_cols=267 Identities=11% Similarity=0.060 Sum_probs=144.4
Q ss_pred cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEE
Q 039497 195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIY 274 (642)
Q Consensus 195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~ 274 (642)
.++|||....++....=+|+.++|.+...+.. .++....+...+....||-||.+++... ....+.+|
T Consensus 32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~-------~~ka~~~~~~PvL~v~WsddgskVf~g~-----~Dk~~k~w 99 (347)
T KOG0647|consen 32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL-------VPKAQQSHDGPVLDVCWSDDGSKVFSGG-----CDKQAKLW 99 (347)
T ss_pred eeEeccccCceEEecccCCceEEEEEecCCcc-------cchhhhccCCCeEEEEEccCCceEEeec-----cCCceEEE
Confidence 46999966555554355788888888765332 3444455566788899999998777743 44489999
Q ss_pred EeecC-------CCCcccCCeecCCCCE--EEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCC-EE
Q 039497 275 DLTLN-------PNFHHYNPFVSANSEF--IGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGG-LI 344 (642)
Q Consensus 275 d~~~~-------~~~~~~~~~~spDg~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l 344 (642)
||..+ +...+....|-+...+ |+.-+-+ .++..|..+-..+...+ ....+ .+..|-. -+
T Consensus 100 DL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWD------KTlKfWD~R~~~pv~t~---~LPeR--vYa~Dv~~pm 168 (347)
T KOG0647|consen 100 DLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWD------KTLKFWDTRSSNPVATL---QLPER--VYAADVLYPM 168 (347)
T ss_pred EccCCCeeeeeecccceeEEEEecCCCcceeEecccc------cceeecccCCCCeeeee---eccce--eeehhccCce
Confidence 99543 2333334444443331 2221111 11333333221111111 12221 2222221 12
Q ss_pred EEEecCCCceeEEEEECCCCCeeE--Eee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCC
Q 039497 345 VFNHDFELNAGIKIAKSDGSKRWT--LIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR 420 (642)
Q Consensus 345 ~~~~~~~~~~~l~~~d~~~~~~~~--l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 420 (642)
+.+. ....+|.++++.++.... ... ..-+..++.-+|.+..+..+- .+++.|..++.. + ..
T Consensus 169 ~vVa--ta~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi-------EGrv~iq~id~~-~-----~~ 233 (347)
T KOG0647|consen 169 AVVA--TAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI-------EGRVAIQYIDDP-N-----PK 233 (347)
T ss_pred eEEE--ecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee-------cceEEEEecCCC-C-----cc
Confidence 2222 335788999997654221 111 344667777777776666653 456666666541 0 00
Q ss_pred CccccceEEc---cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCE
Q 039497 421 EEIPCDVKIL---TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497 (642)
Q Consensus 421 ~~~~~~~~~l---~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~ 497 (642)
..-.++..+- ....-..+..++|.|.-..|+.+. ++..+-.||.+.... ++.-..++..+....|+.+|..
T Consensus 234 ~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaG---sDGtf~FWDkdar~k---Lk~s~~~~qpItcc~fn~~G~i 307 (347)
T KOG0647|consen 234 DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAG---SDGTFSFWDKDARTK---LKTSETHPQPITCCSFNRNGSI 307 (347)
T ss_pred CceeEEEeccCCCCCCceEEecceEeecccceEEEec---CCceEEEecchhhhh---hhccCcCCCccceeEecCCCCE
Confidence 0000011110 011113456789999776777665 334667777664432 3444456667788899999999
Q ss_pred EEEEecCC
Q 039497 498 IAFSSNRH 505 (642)
Q Consensus 498 l~~~~~~~ 505 (642)
++|+....
T Consensus 308 faYA~gYD 315 (347)
T KOG0647|consen 308 FAYALGYD 315 (347)
T ss_pred EEEEeecc
Confidence 99987643
No 216
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=7.7e-06 Score=88.96 Aligned_cols=230 Identities=13% Similarity=0.138 Sum_probs=142.6
Q ss_pred CccEEcCCCCE---EEEEecCCCceeEEEEECCC----CCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCC
Q 039497 333 SFPSFSPDGGL---IVFNHDFELNAGIKIAKSDG----SKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERA 401 (642)
Q Consensus 333 ~~~~~spdg~~---l~~~~~~~~~~~l~~~d~~~----~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 401 (642)
..++|.+-|.. |+..+ ...+.|-+|+.+. .+...+.. .+.+..+.|++...-++... .+++
T Consensus 68 ~kL~W~~~g~~~~GlIaGG--~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASG------a~~g 139 (1049)
T KOG0307|consen 68 NKLAWGSYGSHSHGLIAGG--LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASG------ADDG 139 (1049)
T ss_pred eeeeecccCCCccceeecc--ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeecc------CCCC
Confidence 45688887776 23322 2335566666543 22222222 56788899999877444444 3489
Q ss_pred eEEEEEEEeecCCCCCCCCCccccceEEccc---cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee
Q 039497 402 TVQIARVSFQLDPSDDNNREEIPCDVKILTK---EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ 478 (642)
Q Consensus 402 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~ 478 (642)
.+.||++.. ....++. .....+..++|...-.+|+.....+| ...+||+...+. +..
T Consensus 140 eI~iWDlnn---------------~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg--~~~iWDlr~~~p---ii~ 199 (1049)
T KOG0307|consen 140 EILIWDLNK---------------PETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSG--RAVIWDLRKKKP---IIK 199 (1049)
T ss_pred cEEEeccCC---------------cCCCCCCCCCCCcccceEeccchhhhHHhhccCCCC--CceeccccCCCc---ccc
Confidence 999999964 1122221 11135666788777677765554444 567788875543 455
Q ss_pred CCCCCC--cccceeEecCCCE-EEEEecCCCCCCCCceeEEEEeCCCCceE-EeeecCCCCCCCcccccccceEEcCCCC
Q 039497 479 LTDGPW--IDTMPSWSPKGDL-IAFSSNRHNPDNVEAFSLYVIKPDGSGLR-RIHVAGPEGSGDVDRERINHVCFSADGE 554 (642)
Q Consensus 479 l~~~~~--~~~~~~~spdG~~-l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~S~Dg~ 554 (642)
+..... ....+.|+||.-. |+.++.+. ....|-+||+.-.... ++. .+++. .+..+.|.+.+.
T Consensus 200 ls~~~~~~~~S~l~WhP~~aTql~~As~dd-----~~PviqlWDlR~assP~k~~-~~H~~-------GilslsWc~~D~ 266 (1049)
T KOG0307|consen 200 LSDTPGRMHCSVLAWHPDHATQLLVASGDD-----SAPVIQLWDLRFASSPLKIL-EGHQR-------GILSLSWCPQDP 266 (1049)
T ss_pred cccCCCccceeeeeeCCCCceeeeeecCCC-----CCceeEeecccccCCchhhh-ccccc-------ceeeeccCCCCc
Confidence 554433 3457899998844 66665554 4567889997543221 121 23443 467899999887
Q ss_pred EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCceEEeecC
Q 039497 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQLDLGKLR 619 (642)
Q Consensus 555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~~~~~~~~ 619 (642)
.+++++...+ +|..|+.++++ +-.+...+.+...+.|.|..--+++...
T Consensus 267 ~lllSsgkD~----------------~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 267 RLLLSSGKDN----------------RIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAAS 316 (1049)
T ss_pred hhhhcccCCC----------------CeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhhe
Confidence 7877776643 89999999877 5567666666778899887754444433
No 217
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.16 E-value=0.0014 Score=69.13 Aligned_cols=250 Identities=11% Similarity=0.016 Sum_probs=127.6
Q ss_pred eecCCcEEEEEEeccCCceeeEEEEEeec-------CCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCC
Q 039497 250 AFHDGKRLAVATRRKNRNFRHIEIYDLTL-------NPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPV 322 (642)
Q Consensus 250 ~SpdG~~l~~~~~~~~~~~~~i~~~d~~~-------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (642)
++|||+.+..... ....+...|..+ .-........+++||++++......+.. ..+........
T Consensus 200 lpnDGk~l~~~~e----y~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G----~tl~em~a~e~- 270 (635)
T PRK02888 200 LPNDGKDLDDPKK----YRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEG----VTLAEMMAAER- 270 (635)
T ss_pred cCCCCCEeecccc----eeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccC----cceeeeccccC-
Confidence 4678886643321 222444444411 1122345678999999998885432211 11111111111
Q ss_pred ceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC-----CCeeE-EeecCCceeeeeecCCCEEEEEEcCCCc
Q 039497 323 KELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG-----SKRWT-LIKDRTAFYNSWSPTEKHVIYTSTGPIF 396 (642)
Q Consensus 323 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~-----~~~~~-l~~~~~~~~~~~spdg~~l~~~~~~~~~ 396 (642)
..+...... ....+.+||++..+ . ...|-++|... .+... +......+.+.+||||++++....
T Consensus 271 d~~vvfni~-~iea~vkdGK~~~V-~----gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank---- 340 (635)
T PRK02888 271 DWVVVFNIA-RIEEAVKAGKFKTI-G----GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK---- 340 (635)
T ss_pred ceEEEEchH-HHHHhhhCCCEEEE-C----CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC----
Confidence 111111111 12356788986554 2 35788888876 23333 333778899999999999988873
Q ss_pred ccCCCeEEEEEEEeec---CCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC----
Q 039497 397 QSERATVQIARVSFQL---DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN---- 469 (642)
Q Consensus 397 ~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~---- 469 (642)
....+.++++.... +++..+.. . ....+.-+ ....+.+|.++|+ +|++.- -.++|.+|++++
T Consensus 341 --lS~tVSVIDv~k~k~~~~~~~~~~~-~---vvaevevG--lGPLHTaFDg~G~--aytslf-~dsqv~kwn~~~a~~~ 409 (635)
T PRK02888 341 --LSPTVTVIDVRKLDDLFDGKIKPRD-A---VVAEPELG--LGPLHTAFDGRGN--AYTTLF-LDSQIVKWNIEAAIRA 409 (635)
T ss_pred --CCCcEEEEEChhhhhhhhccCCccc-e---EEEeeccC--CCcceEEECCCCC--EEEeEe-ecceeEEEehHHHHHH
Confidence 36778888775410 00000000 0 01111111 2344678988886 444421 335899999875
Q ss_pred --Cccccc-eeeCCCCCCcccce------eEecCCCEEEEEecCCCCC-----CCCceeEEEEeCCCCceEEeee
Q 039497 470 --GEFNGD-IRQLTDGPWIDTMP------SWSPKGDLIAFSSNRHNPD-----NVEAFSLYVIKPDGSGLRRIHV 530 (642)
Q Consensus 470 --g~~~~~-~~~l~~~~~~~~~~------~~spdG~~l~~~~~~~~~~-----~~~~~~l~~~d~~~~~~~~l~~ 530 (642)
|+.+.+ +..+.-+ +...+. .-.|||++|+....-...+ --.+..--++|+.+.+.+.+..
T Consensus 410 ~~g~~~~~v~~k~dV~-y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdkM~lv~d 483 (635)
T PRK02888 410 YKGEKVDPIVQKLDVH-YQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDKMKLVHD 483 (635)
T ss_pred hccccCCcceecccCC-CccceeeecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCeeEEEec
Confidence 221000 2223222 112222 3479999998776543211 0112234567888888777764
No 218
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.14 E-value=0.00019 Score=67.55 Aligned_cols=199 Identities=16% Similarity=0.187 Sum_probs=115.2
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEE
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV 408 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~ 408 (642)
.-+|++|+..++.... ..+|.++...+........ +..+..+.|+|..++|+.++. +.+.++|..
T Consensus 15 chAwn~drt~iAv~~~---~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~-------drnayVw~~ 84 (361)
T KOG1523|consen 15 CHAWNSDRTQIAVSPN---NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSH-------DRNAYVWTQ 84 (361)
T ss_pred eeeecCCCceEEeccC---CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccC-------CCCcccccc
Confidence 4489999999998643 3567777776766333322 567788999999999998874 567778887
Q ss_pred EeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCccc
Q 039497 409 SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDT 487 (642)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~ 487 (642)
.. ++++.+ .-.|.... +....+.|||.++.++..+... ...|+.+.-+..=.+ .+.|-. ....+.
T Consensus 85 ~~--~~~Wkp--------tlvLlRiN-rAAt~V~WsP~enkFAVgSgar-~isVcy~E~ENdWWV--sKhikkPirStv~ 150 (361)
T KOG1523|consen 85 PS--GGTWKP--------TLVLLRIN-RAATCVKWSPKENKFAVGSGAR-LISVCYYEQENDWWV--SKHIKKPIRSTVT 150 (361)
T ss_pred CC--CCeecc--------ceeEEEec-cceeeEeecCcCceEEeccCcc-EEEEEEEecccceeh--hhhhCCcccccee
Confidence 44 322211 11122222 4567789999999998876321 123333332210000 011111 123467
Q ss_pred ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCC-------C--cccccccceEEcCCCCEEEE
Q 039497 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSG-------D--VDRERINHVCFSADGEWLLF 558 (642)
Q Consensus 488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~-------~--~~~~~~~~~~~S~Dg~~l~~ 558 (642)
.+.|+|++-.|+..+.+..- ..-..|+-+++.+... ..+...+ + ..+..+..+.|||+|..|++
T Consensus 151 sldWhpnnVLlaaGs~D~k~---rVfSayIK~Vdekpap----~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~law 223 (361)
T KOG1523|consen 151 SLDWHPNNVLLAAGSTDGKC---RVFSAYIKGVDEKPAP----TPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAW 223 (361)
T ss_pred eeeccCCcceecccccCcce---eEEEEeeeccccCCCC----CCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeE
Confidence 88999998777777665421 2223344444432210 0100000 0 11235678899999999999
Q ss_pred EEecC
Q 039497 559 TANLG 563 (642)
Q Consensus 559 ~~~~~ 563 (642)
...+.
T Consensus 224 v~Hds 228 (361)
T KOG1523|consen 224 VGHDS 228 (361)
T ss_pred ecCCC
Confidence 99875
No 219
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.13 E-value=0.00025 Score=67.98 Aligned_cols=144 Identities=19% Similarity=0.203 Sum_probs=97.3
Q ss_pred CEEEEEecCCCceeEEEEECCCCCeeEEee-----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCC
Q 039497 342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIK-----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD 416 (642)
Q Consensus 342 ~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 416 (642)
++|+..-. ..||++|+..-+.-.-.. ..+..++..++.+.+|+|-.. ...+.+.||++..
T Consensus 98 ~RLvV~Le----e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s-----~t~GdV~l~d~~n------ 162 (391)
T KOG2110|consen 98 KRLVVCLE----ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS-----TTSGDVVLFDTIN------ 162 (391)
T ss_pred ceEEEEEc----ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC-----CCCceEEEEEccc------
Confidence 45555443 469999998755322211 223455566666779998754 3467888888754
Q ss_pred CCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC--CcccceeEecC
Q 039497 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP--WIDTMPSWSPK 494 (642)
Q Consensus 417 ~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~--~~~~~~~~spd 494 (642)
-. ....+..+. +.+..++|++||..|+.++.+. .-|.++.+.+|+. +.++-.+. ..+.+++|+||
T Consensus 163 --l~-----~v~~I~aH~-~~lAalafs~~G~llATASeKG--TVIRVf~v~~G~k---l~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 163 --LQ-----PVNTINAHK-GPLAALAFSPDGTLLATASEKG--TVIRVFSVPEGQK---LYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred --ce-----eeeEEEecC-CceeEEEECCCCCEEEEeccCc--eEEEEEEcCCccE---eeeeeCCceeeEEEEEEECCC
Confidence 12 455666665 7888899999999999988654 3556677778886 66665543 34567899999
Q ss_pred CCEEEEEecCCCCCCCCceeEEEEe
Q 039497 495 GDLIAFSSNRHNPDNVEAFSLYVIK 519 (642)
Q Consensus 495 G~~l~~~~~~~~~~~~~~~~l~~~d 519 (642)
+++|...++.+ ..||+..+
T Consensus 230 s~~L~~sS~Te------TVHiFKL~ 248 (391)
T KOG2110|consen 230 SQFLAASSNTE------TVHIFKLE 248 (391)
T ss_pred CCeEEEecCCC------eEEEEEec
Confidence 99888888764 45555554
No 220
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.13 E-value=0.00023 Score=66.82 Aligned_cols=215 Identities=20% Similarity=0.228 Sum_probs=133.7
Q ss_pred CCCCEEEEEecCCCceeEEEEECCCCCeeEEe--ecCCceeeeeecCCC--EEEEEEcCCCcccCCCeEEEEEEEeecCC
Q 039497 339 PDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI--KDRTAFYNSWSPTEK--HVIYTSTGPIFQSERATVQIARVSFQLDP 414 (642)
Q Consensus 339 pdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~--~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 414 (642)
-+|.+++-. .....|++||+......... +.+.+....|.++-. .|+-++ +++.+.+|+...
T Consensus 51 Vs~~~~aSG---ssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~s-------dDG~i~iw~~~~---- 116 (362)
T KOG0294|consen 51 VSGPYVASG---SSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGS-------DDGHIIIWRVGS---- 116 (362)
T ss_pred ecceeEecc---CCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeec-------CCCcEEEEEcCC----
Confidence 345555443 34578999998776543322 267788889988765 676665 378899998743
Q ss_pred CCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecC
Q 039497 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494 (642)
Q Consensus 415 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spd 494 (642)
-+ ....+..+. +.+..++.+|-|+..+..+ ++..|.+||+-.|+. ..+.+.......+.|+|.
T Consensus 117 ------W~---~~~slK~H~-~~Vt~lsiHPS~KLALsVg---~D~~lr~WNLV~Gr~----a~v~~L~~~at~v~w~~~ 179 (362)
T KOG0294|consen 117 ------WE---LLKSLKAHK-GQVTDLSIHPSGKLALSVG---GDQVLRTWNLVRGRV----AFVLNLKNKATLVSWSPQ 179 (362)
T ss_pred ------eE---Eeeeecccc-cccceeEecCCCceEEEEc---CCceeeeehhhcCcc----ceeeccCCcceeeEEcCC
Confidence 11 344455555 6799999999997554444 455888999988884 444444445566899999
Q ss_pred CCEEEEEecCCCCCCCCceeEEEEeCCCCce-EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCC
Q 039497 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL-RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP 573 (642)
Q Consensus 495 G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~ 573 (642)
|.++++...+. |-+|.++.... ..+... . ....+.|- ++..|++...++
T Consensus 180 Gd~F~v~~~~~---------i~i~q~d~A~v~~~i~~~---~-------r~l~~~~l-~~~~L~vG~d~~---------- 229 (362)
T KOG0294|consen 180 GDHFVVSGRNK---------IDIYQLDNASVFREIENP---K-------RILCATFL-DGSELLVGGDNE---------- 229 (362)
T ss_pred CCEEEEEeccE---------EEEEecccHhHhhhhhcc---c-------cceeeeec-CCceEEEecCCc----------
Confidence 99988887654 55555544332 112211 1 22344553 555565554432
Q ss_pred CCCCCCCcEEEEEcCCC-ceeeccCCCCCCCCcE-E-ecCCceEEeecCCC
Q 039497 574 NQFQPYGDLYVVKLDGS-GLRRLTWNGYENGTPA-W-HPGNQLDLGKLRLE 621 (642)
Q Consensus 574 ~~~~~~~~l~~~~~~~~-~~~~lt~~~~~~~~~~-~-s~dg~~~~~~~~~~ 621 (642)
.|-++|.+.. .+..+..+...+.++. | .|++.||++..+.|
T Consensus 230 -------~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG 273 (362)
T KOG0294|consen 230 -------WISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDG 273 (362)
T ss_pred -------eEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCc
Confidence 6777777743 3556666665555554 2 35667777766555
No 221
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.13 E-value=9.4e-05 Score=76.53 Aligned_cols=116 Identities=21% Similarity=0.235 Sum_probs=87.6
Q ss_pred cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC--CCCccCcEECCCCCe
Q 039497 372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE--TGNNAFPSCSPDGKF 449 (642)
Q Consensus 372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~SpDg~~ 449 (642)
...++++...|..++++.+.. +.+++|+++.. ++ ..+.+.... .+..-.+...|.|-|
T Consensus 596 ktTlYDm~Vdp~~k~v~t~cQ-------Drnirif~i~s--------gK-----q~k~FKgs~~~eG~lIKv~lDPSgiY 655 (1080)
T KOG1408|consen 596 KTTLYDMAVDPTSKLVVTVCQ-------DRNIRIFDIES--------GK-----QVKSFKGSRDHEGDLIKVILDPSGIY 655 (1080)
T ss_pred cceEEEeeeCCCcceEEEEec-------ccceEEEeccc--------cc-----eeeeecccccCCCceEEEEECCCccE
Confidence 456788899999999988874 78999999976 22 233332221 133344678889988
Q ss_pred EEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC
Q 039497 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD 521 (642)
Q Consensus 450 l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~ 521 (642)
|+..-. +..|-++|.-+|+. +.+.+.+...+..+.|++|=+.|+-.+.++ .|++|.+.
T Consensus 656 ~atScs---dktl~~~Df~sgEc---vA~m~GHsE~VTG~kF~nDCkHlISvsgDg--------CIFvW~lp 713 (1080)
T KOG1408|consen 656 LATSCS---DKTLCFVDFVSGEC---VAQMTGHSEAVTGVKFLNDCKHLISVSGDG--------CIFVWKLP 713 (1080)
T ss_pred EEEeec---CCceEEEEeccchh---hhhhcCcchheeeeeecccchhheeecCCc--------eEEEEECc
Confidence 886653 34799999999998 788888888899999999999998887765 38888765
No 222
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.09 E-value=0.00011 Score=75.28 Aligned_cols=244 Identities=11% Similarity=0.058 Sum_probs=143.0
Q ss_pred eCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecC
Q 039497 200 GDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLN 279 (642)
Q Consensus 200 pdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~ 279 (642)
|.++.+|++ +.||...+|.++...+++ ...-...+..+...+..+++..+|+.|+.++.+. ++.+|+....
T Consensus 35 ~~~ryLfTg-GRDg~i~~W~~~~d~~~~---s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDt-----TVK~W~~~~~ 105 (735)
T KOG0308|consen 35 PNGRYLFTG-GRDGIIRLWSVTQDSNEP---STPYIASMEHHSDWVNDIILCGNGKTLISASSDT-----TVKVWNAHKD 105 (735)
T ss_pred CCCceEEec-CCCceEEEeccccccCCc---ccchhhhhhhhHhHHhhHHhhcCCCceEEecCCc-----eEEEeecccC
Confidence 444767777 788988888777665521 0001233444545677777788898888866554 7888876322
Q ss_pred CCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCC--CccEE-cCCCCEEEEEecCCCceeE
Q 039497 280 PNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNG--SFPSF-SPDGGLIVFNHDFELNAGI 356 (642)
Q Consensus 280 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-spdg~~l~~~~~~~~~~~l 356 (642)
... +. .. +....+ ..+++ .++...++-. +-...|
T Consensus 106 ~~~---------------c~-----------------------st--ir~H~DYVkcla~~ak~~~lvaSg---GLD~~I 142 (735)
T KOG0308|consen 106 NTF---------------CM-----------------------ST--IRTHKDYVKCLAYIAKNNELVASG---GLDRKI 142 (735)
T ss_pred cch---------------hH-----------------------hh--hhcccchheeeeecccCceeEEec---CCCccE
Confidence 100 00 00 000000 11222 3333322221 335788
Q ss_pred EEEECCCCCeeEEee-------------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCcc
Q 039497 357 KIAKSDGSKRWTLIK-------------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEI 423 (642)
Q Consensus 357 ~~~d~~~~~~~~l~~-------------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 423 (642)
+++|+..+..+.+.. ...+++++..+.|..|+-.. ....+++|+-.. ..
T Consensus 143 flWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGg-------tek~lr~wDprt--------~~--- 204 (735)
T KOG0308|consen 143 FLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGG-------TEKDLRLWDPRT--------CK--- 204 (735)
T ss_pred EEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecC-------cccceEEecccc--------cc---
Confidence 999988774321111 23466677777774333332 367788998766 23
Q ss_pred ccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEec
Q 039497 424 PCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503 (642)
Q Consensus 424 ~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~ 503 (642)
+...|..+. ..+..+..++||+.++.++.+ ..|-+||+...+- +..+.-+...++...-+|+=+.+|+...
T Consensus 205 --kimkLrGHT-dNVr~ll~~dDGt~~ls~sSD---gtIrlWdLgqQrC---l~T~~vH~e~VWaL~~~~sf~~vYsG~r 275 (735)
T KOG0308|consen 205 --KIMKLRGHT-DNVRVLLVNDDGTRLLSASSD---GTIRLWDLGQQRC---LATYIVHKEGVWALQSSPSFTHVYSGGR 275 (735)
T ss_pred --ceeeeeccc-cceEEEEEcCCCCeEeecCCC---ceEEeeeccccce---eeeEEeccCceEEEeeCCCcceEEecCC
Confidence 667777766 778889999999999988743 3788888853332 2333334444666666777777777776
Q ss_pred CCCCCCCCceeEEEEeCCC-CceEEeee
Q 039497 504 RHNPDNVEAFSLYVIKPDG-SGLRRIHV 530 (642)
Q Consensus 504 ~~~~~~~~~~~l~~~d~~~-~~~~~l~~ 530 (642)
++. |++-|+.. .+.+.|..
T Consensus 276 d~~--------i~~Tdl~n~~~~tlick 295 (735)
T KOG0308|consen 276 DGN--------IYRTDLRNPAKSTLICK 295 (735)
T ss_pred CCc--------EEecccCCchhheEeec
Confidence 665 99999987 34444443
No 223
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.09 E-value=0.00021 Score=70.57 Aligned_cols=211 Identities=10% Similarity=0.006 Sum_probs=130.4
Q ss_pred ceeEEEEECCCCCeeE--EeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497 353 NAGIKIAKSDGSKRWT--LIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL 430 (642)
Q Consensus 353 ~~~l~~~d~~~~~~~~--l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 430 (642)
+..|.++.+......+ ....+.+..++-+|+|.+|+... ..+++++|.+.+ |. -...+
T Consensus 60 rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~-------i~g~lYlWelss--------G~-----LL~v~ 119 (476)
T KOG0646|consen 60 RPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGT-------ISGNLYLWELSS--------GI-----LLNVL 119 (476)
T ss_pred CccccccccCchhhhhhhcccccceeeeecCCCceEEEeec-------ccCcEEEEEecc--------cc-----HHHHH
Confidence 3456666654443222 11267788899999999887764 278999999987 33 44555
Q ss_pred cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC------CccccceeeCCCCCCcccceeEecCC--CEEEEEe
Q 039497 431 TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN------GEFNGDIRQLTDGPWIDTMPSWSPKG--DLIAFSS 502 (642)
Q Consensus 431 ~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~------g~~~~~~~~l~~~~~~~~~~~~spdG--~~l~~~~ 502 (642)
..+- ..+..+.||-||.+|+..+ ++| .|..|.+.+ -..+++...+..+...+..+...+.| -+|+..+
T Consensus 120 ~aHY-Q~ITcL~fs~dgs~iiTgs-kDg--~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS 195 (476)
T KOG0646|consen 120 SAHY-QSITCLKFSDDGSHIITGS-KDG--AVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS 195 (476)
T ss_pred Hhhc-cceeEEEEeCCCcEEEecC-CCc--cEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec
Confidence 5554 7788899999998876554 445 444444321 11112344455555555555555443 3466555
Q ss_pred cCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcE
Q 039497 503 NRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDL 582 (642)
Q Consensus 503 ~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 582 (642)
.+.. +.+||+..+.+-.-.. ... ...+++.+|-++.+|....++ .|
T Consensus 196 ~D~t--------~k~wdlS~g~LLlti~--fp~-------si~av~lDpae~~~yiGt~~G-----------------~I 241 (476)
T KOG0646|consen 196 EDRT--------IKLWDLSLGVLLLTIT--FPS-------SIKAVALDPAERVVYIGTEEG-----------------KI 241 (476)
T ss_pred CCce--------EEEEEeccceeeEEEe--cCC-------cceeEEEcccccEEEecCCcc-----------------eE
Confidence 5543 8999998886532221 122 457889999999888777665 45
Q ss_pred EEEEcCC-----------------CceeeccCCCC--CCCCcEEecCCceEEeecCCC
Q 039497 583 YVVKLDG-----------------SGLRRLTWNGY--ENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 583 ~~~~~~~-----------------~~~~~lt~~~~--~~~~~~~s~dg~~~~~~~~~~ 621 (642)
|..++.+ -+...+..+.+ .+..++.+-||.++++....|
T Consensus 242 ~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg 299 (476)
T KOG0646|consen 242 FQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDG 299 (476)
T ss_pred EeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCC
Confidence 5444322 12334444444 567789999999998876555
No 224
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.08 E-value=0.00041 Score=65.31 Aligned_cols=160 Identities=14% Similarity=0.159 Sum_probs=97.5
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEE--e--ecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTL--I--KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVS 409 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l--~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~ 409 (642)
.+.|+|..++|+..+. +.+..+|... ++++-++. . .+.....+.|+|.++++++.+. ...+.+|.++
T Consensus 60 gvdWap~snrIvtcs~-drnayVw~~~-~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSg-------ar~isVcy~E 130 (361)
T KOG1523|consen 60 GVDWAPKSNRIVTCSH-DRNAYVWTQP-SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSG-------ARLISVCYYE 130 (361)
T ss_pred EEeecCCCCceeEccC-CCCccccccC-CCCeeccceeEEEeccceeeEeecCcCceEEeccC-------ccEEEEEEEe
Confidence 4699999999988765 2333444432 45443322 1 2777889999999999998873 4566777775
Q ss_pred eecCCCCCCCCCccccceEE----ccccCCCCccCcEECCCCCeEEEEeCCCCceeE---EEEECCCCccc---------
Q 039497 410 FQLDPSDDNNREEIPCDVKI----LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNL---FVLDAVNGEFN--------- 473 (642)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l---~~~d~~~g~~~--------- 473 (642)
. . ...- +.......+..+.|.|++-.++..+ -++.-.+ |+-+++....+
T Consensus 131 ~--E------------NdWWVsKhikkPirStv~sldWhpnnVLlaaGs-~D~k~rVfSayIK~Vdekpap~pWgsk~PF 195 (361)
T KOG1523|consen 131 Q--E------------NDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS-TDGKCRVFSAYIKGVDEKPAPTPWGSKMPF 195 (361)
T ss_pred c--c------------cceehhhhhCCccccceeeeeccCCcceecccc-cCcceeEEEEeeeccccCCCCCCCccCCcH
Confidence 5 2 1111 1111113456789999886665444 2343333 44455432211
Q ss_pred -cceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce
Q 039497 474 -GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL 525 (642)
Q Consensus 474 -~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~ 525 (642)
..+.......+.+....|||+|..|+|.+.+.. +.+.|..+...
T Consensus 196 G~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~--------v~~~da~~p~~ 240 (361)
T KOG1523|consen 196 GQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDST--------VSFVDAAGPSE 240 (361)
T ss_pred HHHHHhhccCCCceeeeEeCCCCCEeeEecCCCc--------eEEeecCCCch
Confidence 001112233456678899999999999998875 88888877653
No 225
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.07 E-value=0.0003 Score=69.48 Aligned_cols=222 Identities=14% Similarity=0.114 Sum_probs=138.3
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
.+.-+|+|.+|+-. .-..+||+|.+.+|..-.+.. -..+..+.|+-||+.|+..+. ++.+.+|.+...
T Consensus 86 al~s~n~G~~l~ag---~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk-------Dg~V~vW~l~~l 155 (476)
T KOG0646|consen 86 ALASSNLGYFLLAG---TISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSK-------DGAVLVWLLTDL 155 (476)
T ss_pred eeecCCCceEEEee---cccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCC-------CccEEEEEEEee
Confidence 44668999876653 235789999999998644433 566888999999998877764 789999988653
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEECCCC--CeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccce
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG--KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg--~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~ 489 (642)
.+.. +.+. +.....+..+. ..+.++...+-| .+|+.++. +..+.+||+..|.. +..++. +.....+
T Consensus 156 v~a~--~~~~--~~p~~~f~~Ht-lsITDl~ig~Gg~~~rl~TaS~---D~t~k~wdlS~g~L---Llti~f-p~si~av 223 (476)
T KOG0646|consen 156 VSAD--NDHS--VKPLHIFSDHT-LSITDLQIGSGGTNARLYTASE---DRTIKLWDLSLGVL---LLTITF-PSSIKAV 223 (476)
T ss_pred cccc--cCCC--ccceeeeccCc-ceeEEEEecCCCccceEEEecC---CceEEEEEecccee---eEEEec-CCcceeE
Confidence 2211 1110 11223334443 455555555432 34544442 34788999998886 555543 3456788
Q ss_pred eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc--eE------------Eee-ecCCCCCCCcccccccceEEcCCCC
Q 039497 490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG--LR------------RIH-VAGPEGSGDVDRERINHVCFSADGE 554 (642)
Q Consensus 490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~--~~------------~l~-~~~~~~~~~~~~~~~~~~~~S~Dg~ 554 (642)
+.+|-++.+|.....+. ||+.++.+-. .. ++. ..++. .+..+..++.|-||.
T Consensus 224 ~lDpae~~~yiGt~~G~--------I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~-----~~~~ITcLais~Dgt 290 (476)
T KOG0646|consen 224 ALDPAERVVYIGTEEGK--------IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHE-----NESAITCLAISTDGT 290 (476)
T ss_pred EEcccccEEEecCCcce--------EEeeehhcCCcccccccccccccccceeeeecccc-----CCcceeEEEEecCcc
Confidence 99999998887777664 7776654322 11 000 00111 112567899999999
Q ss_pred EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEE
Q 039497 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAW 607 (642)
Q Consensus 555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~ 607 (642)
.|+..+.++ .+-+||..+.+ ++.++...+.+..+.+
T Consensus 291 lLlSGd~dg-----------------~VcvWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 291 LLLSGDEDG-----------------KVCVWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred EEEeeCCCC-----------------CEEEEecchHHHHHHHhhhccccceeEe
Confidence 887777665 67777887766 4455534455555555
No 226
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.0024 Score=65.78 Aligned_cols=225 Identities=13% Similarity=0.173 Sum_probs=141.1
Q ss_pred cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-c-CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-D-RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412 (642)
Q Consensus 335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~-~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (642)
....++|..++....... .+...+........... . .....+..++++++++.... ....+.+.+..+
T Consensus 36 v~~~~~g~~~~v~~~~~~--~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~------~~~~v~vid~~~-- 105 (381)
T COG3391 36 VAVNPDGTQVYVANSGSN--DVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTG------DSNTVSVIDTAT-- 105 (381)
T ss_pred eEEcCccCEEEEEeecCc--eeeecccccceeeeeccCCCccccceeeCCCCCeEEEecC------CCCeEEEEcCcc--
Confidence 366888877766543222 55555554222222111 2 33456788899998887763 245666666433
Q ss_pred CCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEe
Q 039497 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492 (642)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~s 492 (642)
+ . ....+..+ .....++++|+++.++.+....+...+.++|..+++. ...+..+. .....+++
T Consensus 106 ~------~-----~~~~~~vG--~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~---~~~~~vG~-~P~~~a~~ 168 (381)
T COG3391 106 N------T-----VLGSIPVG--LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV---TATIPVGN-TPTGVAVD 168 (381)
T ss_pred c------c-----eeeEeeec--cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE---EEEEecCC-CcceEEEC
Confidence 1 1 22222222 2556789999999998887643456899999998875 44433332 23678999
Q ss_pred cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec----CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccC
Q 039497 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA----GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAE 568 (642)
Q Consensus 493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~ 568 (642)
|+|++++...... ..|.++|.++....+ ... .... ....+.+++||++++.......
T Consensus 169 p~g~~vyv~~~~~-------~~v~vi~~~~~~v~~-~~~~~~~~~~~-------~P~~i~v~~~g~~~yV~~~~~~---- 229 (381)
T COG3391 169 PDGNKVYVTNSDD-------NTVSVIDTSGNSVVR-GSVGSLVGVGT-------GPAGIAVDPDGNRVYVANDGSG---- 229 (381)
T ss_pred CCCCeEEEEecCC-------CeEEEEeCCCcceec-cccccccccCC-------CCceEEECCCCCEEEEEeccCC----
Confidence 9999988887433 349999987766554 211 1111 3467899999998887765432
Q ss_pred CCCCCCCCCCCCcEEEEEcCCCceeec--cCCCCCCCCcEEecCCceEE
Q 039497 569 PVSWPNQFQPYGDLYVVKLDGSGLRRL--TWNGYENGTPAWHPGNQLDL 615 (642)
Q Consensus 569 ~~~~~~~~~~~~~l~~~~~~~~~~~~l--t~~~~~~~~~~~s~dg~~~~ 615 (642)
...+..++...+..... ............+|+|.++.
T Consensus 230 ----------~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~y 268 (381)
T COG3391 230 ----------SNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAY 268 (381)
T ss_pred ----------CceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEE
Confidence 12788889888776654 22222456789999997763
No 227
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.07 E-value=4.6e-05 Score=76.33 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=48.5
Q ss_pred CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 484 WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 484 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
+.+..++|||||++|+..+.++- |.++|.++-++.-+-..... ....+.||||||+|+....+.
T Consensus 291 g~in~f~FS~DG~~LA~VSqDGf--------LRvF~fdt~eLlg~mkSYFG--------GLLCvcWSPDGKyIvtGGEDD 354 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDGF--------LRIFDFDTQELLGVMKSYFG--------GLLCVCWSPDGKYIVTGGEDD 354 (636)
T ss_pred ccccceeEcCCCceEEEEecCce--------EEEeeccHHHHHHHHHhhcc--------ceEEEEEcCCccEEEecCCcc
Confidence 35667899999999999998875 88888887666555443333 356789999999998776654
No 228
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=98.06 E-value=0.0043 Score=58.39 Aligned_cols=288 Identities=11% Similarity=0.048 Sum_probs=156.2
Q ss_pred cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC--cceEeeCCeEEEEEecCCCceEEEE
Q 039497 142 DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG--WPTWSGDSTIYFHRQADDGWWSIFR 219 (642)
Q Consensus 142 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~--~~~wspdg~~~~~~~~~~g~~~l~~ 219 (642)
.....|||.+..|+.++-++ .|.++++.....+........ ..+|.++.+++... .+| +|.+
T Consensus 16 IS~v~f~~~~~~LLvssWDg------------slrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~--~dg--~vr~ 79 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDG------------SLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGG--LDG--QVRR 79 (323)
T ss_pred eeeEEEcCcCCcEEEEeccC------------cEEEEeccchhhhhheecCCceeeeeccCCceEEEec--cCc--eEEE
Confidence 45688999999998877555 577888777655544443332 34787776555443 466 7778
Q ss_pred EecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEE
Q 039497 220 VSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYH 299 (642)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~ 299 (642)
+|+.++ ...++..++..+..+..++--..++..+. ...|.+||..... ....
T Consensus 80 ~Dln~~--------~~~~igth~~~i~ci~~~~~~~~vIsgsW-----D~~ik~wD~R~~~---------------~~~~ 131 (323)
T KOG1036|consen 80 YDLNTG--------NEDQIGTHDEGIRCIEYSYEVGCVISGSW-----DKTIKFWDPRNKV---------------VVGT 131 (323)
T ss_pred EEecCC--------cceeeccCCCceEEEEeeccCCeEEEccc-----CccEEEEeccccc---------------cccc
Confidence 888887 56677666555555555543333444333 3377777762100 0000
Q ss_pred EeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeE-Eee---cCCc
Q 039497 300 RFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWT-LIK---DRTA 375 (642)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~-l~~---~~~~ 375 (642)
. +.. . .-...+-.|++|+.... ...+.++|+..-.... ... .--+
T Consensus 132 ~------------------d~~-k---------kVy~~~v~g~~LvVg~~---~r~v~iyDLRn~~~~~q~reS~lkyqt 180 (323)
T KOG1036|consen 132 F------------------DQG-K---------KVYCMDVSGNRLVVGTS---DRKVLIYDLRNLDEPFQRRESSLKYQT 180 (323)
T ss_pred c------------------ccC-c---------eEEEEeccCCEEEEeec---CceEEEEEcccccchhhhccccceeEE
Confidence 0 000 0 01133445677776332 3567777776543211 111 2235
Q ss_pred eeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC---CCCccCcEECCCCCeEEE
Q 039497 376 FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE---TGNNAFPSCSPDGKFLVF 452 (642)
Q Consensus 376 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~SpDg~~l~~ 452 (642)
..++.-|++.-.+..+- ++++.+=.++. ..+ ....+-.++..+..... ...+..++|+|--+.++.
T Consensus 181 R~v~~~pn~eGy~~sSi-------eGRVavE~~d~--s~~--~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaT 249 (323)
T KOG1036|consen 181 RCVALVPNGEGYVVSSI-------EGRVAVEYFDD--SEE--AQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFAT 249 (323)
T ss_pred EEEEEecCCCceEEEee-------cceEEEEccCC--chH--HhhhceeEEeeecccCCceEEEEeceeEeccccceEEe
Confidence 56777776655554442 23333222222 000 00000011111111111 023567899997656654
Q ss_pred EeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCC----CCCCceeEEEEeCC
Q 039497 453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP----DNVEAFSLYVIKPD 521 (642)
Q Consensus 453 ~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~----~~~~~~~l~~~d~~ 521 (642)
.. .+.-|-+||+...+. +.++...+..+...+|+.||..||.+..-... +....+.|++.++.
T Consensus 250 gG---sDG~V~~Wd~~~rKr---l~q~~~~~~SI~slsfs~dG~~LAia~sy~ye~~~~~~~~~~~i~I~~l~ 316 (323)
T KOG1036|consen 250 GG---SDGIVNIWDLFNRKR---LKQLAKYETSISSLSFSMDGSLLAIASSYQYERADTPTHERNAIFIRDLT 316 (323)
T ss_pred cC---CCceEEEccCcchhh---hhhccCCCCceEEEEeccCCCeEEEEechhhhcCCCCCCCCCceEEEecc
Confidence 43 334788899987766 78888777778889999999999988764210 02234456666654
No 229
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=98.04 E-value=0.0058 Score=67.31 Aligned_cols=288 Identities=17% Similarity=0.120 Sum_probs=154.3
Q ss_pred cccceeecCCcEEEEEEec----cCCceeeEEEEEe----ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEe
Q 039497 245 CFTPAAFHDGKRLAVATRR----KNRNFRHIEIYDL----TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLE 316 (642)
Q Consensus 245 ~~~~~~SpdG~~l~~~~~~----~~~~~~~i~~~d~----~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~ 316 (642)
+..+.++|+|+.+++.... .......+++.|. ..........+.|||||+.+++....+.. ...+++.
T Consensus 15 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~----~~~l~l~ 90 (620)
T COG1506 15 VSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKTVRLLTFGGGVSELRWSPDGSVLAFVSTDGGR----VAQLYLV 90 (620)
T ss_pred ccCcccCCCCceeEEeeccccccccccccceEEEecccccccccCCcccccccCCCCCEEEEEeccCCC----cceEEEE
Confidence 3345667888888876543 1234456777663 33445566788999999999999733332 2445555
Q ss_pred eccCCCceeEEeeeCCCccEEcCCCCEEEEEec-----CC-------------------CceeEEEEECCCCCeeEEee-
Q 039497 317 PVASPVKELRMLRLNGSFPSFSPDGGLIVFNHD-----FE-------------------LNAGIKIAKSDGSKRWTLIK- 371 (642)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~-----~~-------------------~~~~l~~~d~~~~~~~~l~~- 371 (642)
...+ .+...........|+|+|+++++... .+ ....+++++.++ ....+..
T Consensus 91 ~~~g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~-~~~~~~~~ 166 (620)
T COG1506 91 DVGG---LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIES-KLIKLGLG 166 (620)
T ss_pred ecCC---ceeeeecccccceeCCCCCeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCc-ccccccCC
Confidence 5442 23334445567789999999988211 01 233455555544 1111111
Q ss_pred cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEE
Q 039497 372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451 (642)
Q Consensus 372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~ 451 (642)
...+....+.++++.++....... ......-..+... . ++ .+..++... .....+.|.+||+.++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~-----~~-----~~~~~~~~~-~~~~~~~~~~~gk~~~ 231 (620)
T COG1506 167 NLDVVSFATDGDGRLVASIRLDDD---ADPWVTNLYVLIE-G-----NG-----ELESLTPGE-GSISKLAFDADGKSIA 231 (620)
T ss_pred CCceeeeeeCCCCceeEEeeeccc---cCCceEeeEEEec-C-----CC-----ceEEEcCCC-ceeeeeeeCCCCCeeE
Confidence 333445556666676666554211 0112222222110 0 23 566666665 5677889999999888
Q ss_pred EEeCCCC-----ceeEEEEECCCCccccceee-CCCCC--CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC
Q 039497 452 FRSGRSG-----HKNLFVLDAVNGEFNGDIRQ-LTDGP--WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS 523 (642)
Q Consensus 452 ~~~~~~g-----~~~l~~~d~~~g~~~~~~~~-l~~~~--~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~ 523 (642)
+...... ...+++++...++. .. +.... .......+.-++..++|...... +...++..+..++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~l~~~~~~~~ 303 (620)
T COG1506 232 LLGTESDRGLAEGDFILLLDGELGEV----DGDLSSGDDTRGAWAVEGGLDGDGLLFIATDGG----GSSPLFRVDDLGG 303 (620)
T ss_pred EeccCCccCccccceEEEEecccccc----ceeeccCCcccCcHHhccccCCCcEEEEEecCC----CceEEEEEeccCC
Confidence 8775543 22566666444442 22 11111 11111222345566666666522 3334444443333
Q ss_pred ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEc
Q 039497 524 GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKL 587 (642)
Q Consensus 524 ~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 587 (642)
....+.. . . .....|+.+++.+++....... ..++|.++.
T Consensus 304 ~~~~~~~-~-~---------~~v~~f~~~~~~~~~~~s~~~~-------------p~~i~~~~~ 343 (620)
T COG1506 304 GVEGLSG-D-D---------GGVPGFDVDGRKLALAYSSPTE-------------PPEIYLYDR 343 (620)
T ss_pred ceeeecC-C-C---------ceEEEEeeCCCEEEEEecCCCC-------------ccceEEEcC
Confidence 3322221 1 1 2346677799999988766542 248998876
No 230
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=98.00 E-value=0.00084 Score=73.17 Aligned_cols=137 Identities=19% Similarity=0.248 Sum_probs=87.1
Q ss_pred CCEEEEEEeccCCCcccccccceEEEEccCCceEec-ccCCCccCCceeCCCCcEEEE-EecCCCCCCCCCCCCeeeEEE
Q 039497 100 NNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRL-TPYGVVDYSPSVSYSGKFIAV-ASYESRPWPGEFHELNTDIVV 177 (642)
Q Consensus 100 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l-t~~~~~~~~~~~SPDG~~la~-~~~~~~~~~~~~~~~~~~l~~ 177 (642)
..+|+|+.... ++|..+|..+..++.+ ........+|+|||||++||| ++... -.+...||+
T Consensus 318 ~tkiAfv~~~~---------~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~-------~~g~s~vYv 381 (912)
T TIGR02171 318 KAKLAFRNDVT---------GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEG-------LPGKSSVYV 381 (912)
T ss_pred eeeEEEEEcCC---------CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecC-------CCCCceEEE
Confidence 55788887632 2699999999999988 667667789999999999999 44322 113567999
Q ss_pred EEecCCC--ceeEeecCCCcceEe--eCC--eEEEEEecCCCc-------eEEEEEecCCCcccccCCccceeeCCCCCc
Q 039497 178 FQESDPN--KRVIVCERGGWPTWS--GDS--TIYFHRQADDGW-------WSIFRVSFPENLEFLGFPIAPTRVTPPGVH 244 (642)
Q Consensus 178 ~~~~~g~--~~~l~~~~~~~~~ws--pdg--~~~~~~~~~~g~-------~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 244 (642)
.++.+.. ..+|-.+....|.|- ..| -|+|+....++. ..-|.+....|+ ...+++|...
T Consensus 382 ~~L~t~~~~~vkl~ve~aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~gk-----fg~p~kl~dg--- 453 (912)
T TIGR02171 382 RNLNASGSGLVKLPVENAAIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANGK-----FGTPKKLFDG--- 453 (912)
T ss_pred EehhccCCCceEeecccccccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCCC-----CCCchhhhcc---
Confidence 9987554 556666666788885 555 466665332221 255666665542 0133444433
Q ss_pred cccceeecCCcEEEEEE
Q 039497 245 CFTPAAFHDGKRLAVAT 261 (642)
Q Consensus 245 ~~~~~~SpdG~~l~~~~ 261 (642)
.++.-+|.|.+ |+++.
T Consensus 454 a~hggvs~~~~-lavtg 469 (912)
T TIGR02171 454 AYHGGVSEDLN-LAVSG 469 (912)
T ss_pred ccccccccCCc-eeeeh
Confidence 23334455555 55543
No 231
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.97 E-value=0.002 Score=60.37 Aligned_cols=257 Identities=11% Similarity=0.067 Sum_probs=133.5
Q ss_pred eeeceecCCCCCeEEEEEccCCCcceEEEcCCCCc-ccccCCCCCCcccccccc-CCCEEEEEEeccCCCcccccccceE
Q 039497 46 NFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSK-TELLPSIPCSLFHDRPVA-RNNKLFFISAHEQPDQIFKSWSALY 123 (642)
Q Consensus 46 ~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~-~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~l~ 123 (642)
.+..+|| |.-..++-.+..+|..++|.+...|.. +......++..+ -..| +++..+|....+. ++-
T Consensus 30 IS~l~FS-P~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL--~v~WsddgskVf~g~~Dk---------~~k 97 (347)
T KOG0647|consen 30 ISALAFS-PQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVL--DVCWSDDGSKVFSGGCDK---------QAK 97 (347)
T ss_pred hheeEec-cccCceEEecccCCceEEEEEecCCcccchhhhccCCCeE--EEEEccCCceEEeeccCC---------ceE
Confidence 4677899 844444447889999999999544421 111111111111 1123 5556666666542 333
Q ss_pred EEEccCCceEecccCCCccCCceeCCCCc--EEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCCcceEeeC
Q 039497 124 STDLKASKFTRLTPYGVVDYSPSVSYSGK--FIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGD 201 (642)
Q Consensus 124 ~~~~~~~~~~~lt~~~~~~~~~~~SPDG~--~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~wspd 201 (642)
++++.++++.++..+.+......|=+-.. .|+..+-+. .|-.||.....+.....-. .-.+..|
T Consensus 98 ~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDK------------TlKfWD~R~~~pv~t~~LP--eRvYa~D 163 (347)
T KOG0647|consen 98 LWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDK------------TLKFWDTRSSNPVATLQLP--ERVYAAD 163 (347)
T ss_pred EEEccCCCeeeeeecccceeEEEEecCCCcceeEeccccc------------ceeecccCCCCeeeeeecc--ceeeehh
Confidence 44999999999998887776677655554 566666554 5667777654432221100 0144444
Q ss_pred C--eEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCC-CCccccceeecCCcEEEEEEeccCCceeeEEEEEeec
Q 039497 202 S--TIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPP-GVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL 278 (642)
Q Consensus 202 g--~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~ 278 (642)
- .+++++.+ + .+|..+++.++.. +.+++..+ ......++.-.|++..+..+..+ .+.+..+..
T Consensus 164 v~~pm~vVata-~--r~i~vynL~n~~t------e~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG-----rv~iq~id~ 229 (347)
T KOG0647|consen 164 VLYPMAVVATA-E--RHIAVYNLENPPT------EFKRIESPLKWQTRCVACFQDKDGFALGSIEG-----RVAIQYIDD 229 (347)
T ss_pred ccCceeEEEec-C--CcEEEEEcCCCcc------hhhhhcCcccceeeEEEEEecCCceEeeeecc-----eEEEEecCC
Confidence 4 34555422 2 2566666655421 33444443 56677777767766665543332 233332211
Q ss_pred ------------------CC-CCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcC
Q 039497 279 ------------------NP-NFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSP 339 (642)
Q Consensus 279 ------------------~~-~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 339 (642)
.. ...+...++.|-=..|+....+|. ...|......+....+........-.|+.
T Consensus 230 ~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt------f~FWDkdar~kLk~s~~~~qpItcc~fn~ 303 (347)
T KOG0647|consen 230 PNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT------FSFWDKDARTKLKTSETHPQPITCCSFNR 303 (347)
T ss_pred CCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce------EEEecchhhhhhhccCcCCCccceeEecC
Confidence 00 122345566675556666544444 22232222222111111222334558899
Q ss_pred CCCEEEEEe
Q 039497 340 DGGLIVFNH 348 (642)
Q Consensus 340 dg~~l~~~~ 348 (642)
+|+.++|..
T Consensus 304 ~G~ifaYA~ 312 (347)
T KOG0647|consen 304 NGSIFAYAL 312 (347)
T ss_pred CCCEEEEEe
Confidence 999998854
No 232
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=97.94 E-value=0.048 Score=58.68 Aligned_cols=112 Identities=13% Similarity=0.127 Sum_probs=74.6
Q ss_pred CCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeec-cCCCceeEEeeeC---CCccEEcCCCCEEEEEecCCCceeE
Q 039497 281 NFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPV-ASPVKELRMLRLN---GSFPSFSPDGGLIVFNHDFELNAGI 356 (642)
Q Consensus 281 ~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~~~~~l 356 (642)
.......++||.++.++..-.+|+ ...|...- +....+.+..... ....+||+||..|+-.+. ...+
T Consensus 205 tf~~t~~~~spn~~~~Aa~d~dGr------I~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~---E~VL 275 (792)
T KOG1963|consen 205 TFNITCVALSPNERYLAAGDSDGR------ILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGR---EGVL 275 (792)
T ss_pred cccceeEEeccccceEEEeccCCc------EEEEeccccccccccceEEEecccccceeEEecCCceEeeccc---ceEE
Confidence 333556789999998888766655 33343322 2222333344333 256799999998776332 3567
Q ss_pred EEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEE
Q 039497 357 KIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV 408 (642)
Q Consensus 357 ~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~ 408 (642)
.++.+++++.+.|.. ...+.++.+|||+...+.+.. ++.+++...
T Consensus 276 v~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~-------DNqI~li~~ 321 (792)
T KOG1963|consen 276 VLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLE-------DNQIHLIKA 321 (792)
T ss_pred EEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEec-------CceEEEEec
Confidence 778888888444444 778999999999998877763 678887766
No 233
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=97.92 E-value=0.00031 Score=66.99 Aligned_cols=186 Identities=12% Similarity=0.023 Sum_probs=126.6
Q ss_pred cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEE
Q 039497 372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451 (642)
Q Consensus 372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~ 451 (642)
.+.+.++.+.|-..+++..+ .+..+.||++.+ +. ....|+.+. ..+..+++|+---|++
T Consensus 151 lgWVr~vavdP~n~wf~tgs-------~DrtikIwDlat--------g~-----LkltltGhi-~~vr~vavS~rHpYlF 209 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEWFATGS-------ADRTIKIWDLAT--------GQ-----LKLTLTGHI-ETVRGVAVSKRHPYLF 209 (460)
T ss_pred cceEEEEeeCCCceeEEecC-------CCceeEEEEccc--------Ce-----EEEeecchh-heeeeeeecccCceEE
Confidence 35577888888877776665 378999999987 33 445556555 6778899998766665
Q ss_pred EEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA 531 (642)
Q Consensus 452 ~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 531 (642)
-.. .+.+|--||+...+. ++.-..+-..+..+...|--+.|+..+.+.. +.+||+.+.....+..
T Consensus 210 s~g---edk~VKCwDLe~nkv---IR~YhGHlS~V~~L~lhPTldvl~t~grDst--------~RvWDiRtr~~V~~l~- 274 (460)
T KOG0285|consen 210 SAG---EDKQVKCWDLEYNKV---IRHYHGHLSGVYCLDLHPTLDVLVTGGRDST--------IRVWDIRTRASVHVLS- 274 (460)
T ss_pred Eec---CCCeeEEEechhhhh---HHHhccccceeEEEeccccceeEEecCCcce--------EEEeeecccceEEEec-
Confidence 444 234889999987664 3443444445666788887776766665543 8999998876554443
Q ss_pred CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC-ceeeccCCCCCCCCcEEecC
Q 039497 532 GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS-GLRRLTWNGYENGTPAWHPG 610 (642)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lt~~~~~~~~~~~s~d 610 (642)
++.. .+..+.+.|-.-.++..+.+. .|-+||+..+ ....||.+.-.+..+...|.
T Consensus 275 GH~~-------~V~~V~~~~~dpqvit~S~D~-----------------tvrlWDl~agkt~~tlt~hkksvral~lhP~ 330 (460)
T KOG0285|consen 275 GHTN-------PVASVMCQPTDPQVITGSHDS-----------------TVRLWDLRAGKTMITLTHHKKSVRALCLHPK 330 (460)
T ss_pred CCCC-------cceeEEeecCCCceEEecCCc-----------------eEEEeeeccCceeEeeecccceeeEEecCCc
Confidence 5555 567788877666688888775 5667777654 46678877766667777776
Q ss_pred CceEEee
Q 039497 611 NQLDLGK 617 (642)
Q Consensus 611 g~~~~~~ 617 (642)
...|++.
T Consensus 331 e~~fASa 337 (460)
T KOG0285|consen 331 ENLFASA 337 (460)
T ss_pred hhhhhcc
Confidence 6656554
No 234
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=97.91 E-value=0.0019 Score=62.72 Aligned_cols=197 Identities=11% Similarity=0.081 Sum_probs=117.5
Q ss_pred CCCCcccCCeecCCC-CEEEEEEeecCCCCCCcccceEeeccCCCcee-----EEe--eeCCCccEEcCCCCEEEEEecC
Q 039497 279 NPNFHHYNPFVSANS-EFIGYHRFRGESTEGQSTIPHLEPVASPVKEL-----RML--RLNGSFPSFSPDGGLIVFNHDF 350 (642)
Q Consensus 279 ~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~spdg~~l~~~~~~ 350 (642)
++.+...+..|.|-. ..|+..+++-. ..+|..+-.+-...+ .+. .-......|+|...-+++.+
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~------v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa-- 150 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTK------VMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA-- 150 (472)
T ss_pred CccccccccccCccCCceeecCCCCce------EEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc--
Confidence 455556677888844 44555433322 344444332221111 111 11124568888876666644
Q ss_pred CCceeEEEEECCCCCee-EEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE
Q 039497 351 ELNAGIKIAKSDGSKRW-TLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI 429 (642)
Q Consensus 351 ~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 429 (642)
+..+.|.++|+.+++.. .+.+...+.++.|+-||..|+.++. +..++||+... +. ....
T Consensus 151 g~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~Ttck-------DKkvRv~dpr~--------~~-----~v~e 210 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCK-------DKKVRVIDPRR--------GT-----VVSE 210 (472)
T ss_pred cCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecc-------cceeEEEcCCC--------Cc-----Eeee
Confidence 45678899999988743 2333667889999999999998875 67889988755 11 2222
Q ss_pred ccccCCCCccCcEECCCCCeEEEEe-CCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCC
Q 039497 430 LTKEETGNNAFPSCSPDGKFLVFRS-GRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH 505 (642)
Q Consensus 430 l~~~~~~~~~~~~~SpDg~~l~~~~-~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~ 505 (642)
-..+.........|-.+|+ |+.+. .+-...++-+||...=+.+.....|.... .+-.|.|.||-+.||..+...
T Consensus 211 ~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn-Gvl~PFyD~dt~ivYl~GKGD 285 (472)
T KOG0303|consen 211 GVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN-GVLLPFYDPDTSIVYLCGKGD 285 (472)
T ss_pred cccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCC-ceEEeeecCCCCEEEEEecCC
Confidence 2233323455677888998 43332 34445588889876544322234454443 356789999988777776544
No 235
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=97.87 E-value=0.01 Score=65.38 Aligned_cols=293 Identities=17% Similarity=0.128 Sum_probs=152.4
Q ss_pred ccCCeecCCCCEEEEEEeecCCC-CCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEe-cCCCceeEEEEEC
Q 039497 284 HYNPFVSANSEFIGYHRFRGEST-EGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH-DFELNAGIKIAKS 361 (642)
Q Consensus 284 ~~~~~~spDg~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~-~~~~~~~l~~~d~ 361 (642)
...+..+|++..+++....-... .......|+...+. ............+.|+|||+.+++.. ......++|+++.
T Consensus 15 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~ 92 (620)
T COG1506 15 VSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT--VRLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDV 92 (620)
T ss_pred ccCcccCCCCceeEEeeccccccccccccceEEEeccc--ccccccCCcccccccCCCCCEEEEEeccCCCcceEEEEec
Confidence 34567888888888876531111 01112233322111 11111122335678999999999987 3344578999998
Q ss_pred CCCCeeEEeecCCceeeeeecCCCEEEEEEcCCC----------------cccC-C-CeEEEEEEEeecCCCCCCCCCcc
Q 039497 362 DGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPI----------------FQSE-R-ATVQIARVSFQLDPSDDNNREEI 423 (642)
Q Consensus 362 ~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~----------------~~~~-~-~~~~l~~~~~~~~~~~~~~~~~~ 423 (642)
. + ........+....|+|+|+.+++...... +... . ....++.++. . +
T Consensus 93 ~-g--~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~--~------~--- 158 (620)
T COG1506 93 G-G--LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDI--E------S--- 158 (620)
T ss_pred C-C--ceeeeecccccceeCCCCCeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEcc--C------c---
Confidence 8 4 22222456778899999999998322100 0000 1 1233333332 0 0
Q ss_pred ccceEEccccCCCCccCcEECCCCCeEEEEeCCCC----ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEE
Q 039497 424 PCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG----HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499 (642)
Q Consensus 424 ~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g----~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~ 499 (642)
....+.... .....+.+.++++.++....... ....+.+...++. +..++........+.|.++|+.++
T Consensus 159 --~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~gk~~~ 231 (620)
T COG1506 159 --KLIKLGLGN-LDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGE----LESLTPGEGSISKLAFDADGKSIA 231 (620)
T ss_pred --ccccccCCC-CceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCc----eEEEcCCCceeeeeeeCCCCCeeE
Confidence 111222222 34445566666777666554332 1233444334566 477777777788899999999888
Q ss_pred EEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEec-CCcccCCCCCCCCCCC
Q 039497 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL-GAVMAEPVSWPNQFQP 578 (642)
Q Consensus 500 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~-~~~~~~~~~~~~~~~~ 578 (642)
+........+.....+++++...++........... .....+.+.-++..++|...+ .+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~------------- 292 (620)
T COG1506 232 LLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDT------RGAWAVEGGLDGDGLLFIATDGGGS------------- 292 (620)
T ss_pred EeccCCccCccccceEEEEeccccccceeeccCCcc------cCcHHhccccCCCcEEEEEecCCCc-------------
Confidence 887765433455666777773333333311111000 012223333567777777766 321
Q ss_pred CCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497 579 YGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 579 ~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
..++.+...++....+....+. ...|+.++..++...+..
T Consensus 293 -~~l~~~~~~~~~~~~~~~~~~~--v~~f~~~~~~~~~~~s~~ 332 (620)
T COG1506 293 -SPLFRVDDLGGGVEGLSGDDGG--VPGFDVDGRKLALAYSSP 332 (620)
T ss_pred -eEEEEEeccCCceeeecCCCce--EEEEeeCCCEEEEEecCC
Confidence 1444444333333333332222 345555776665554444
No 236
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=97.85 E-value=0.00071 Score=62.83 Aligned_cols=204 Identities=14% Similarity=0.102 Sum_probs=121.1
Q ss_pred cCCceeeeeecCCCEEEEEEcC-CCcccCCCeEEEEEEEeecCCCCCCCC-CccccceEEccccCCCCccCcEECCCCCe
Q 039497 372 DRTAFYNSWSPTEKHVIYTSTG-PIFQSERATVQIARVSFQLDPSDDNNR-EEIPCDVKILTKEETGNNAFPSCSPDGKF 449 (642)
Q Consensus 372 ~~~~~~~~~spdg~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~SpDg~~ 449 (642)
.+.+..++-+|-.+.|+.+... ..-...-....||.+.. +-. .+. ..+. ....|....-+.+..+.|-||++.
T Consensus 63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe--~~~--~S~~~tlE-~v~~Ldteavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPE--PLG--QSNSSTLE-CVASLDTEAVGKINCVEWEPNSDK 137 (370)
T ss_pred CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEeccc--ccC--ccccchhh-HhhcCCHHHhCceeeEEEcCCCCe
Confidence 5678888888876666554432 10011124567888865 200 000 0000 222233222245677899999999
Q ss_pred EEEEeCCCCceeEEEEECCCCccccceeeCCCC----CCcccceeEec--CCCEEEEEecCCCCCCCCceeEEEEeCCCC
Q 039497 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG----PWIDTMPSWSP--KGDLIAFSSNRHNPDNVEAFSLYVIKPDGS 523 (642)
Q Consensus 450 l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~----~~~~~~~~~sp--dG~~l~~~~~~~~~~~~~~~~l~~~d~~~~ 523 (642)
++.... .+|.+|+++.+.. .....+... .....+-+||| ||+.++.++... |+-||+.+.
T Consensus 138 lasm~d----n~i~l~~l~ess~-~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~t---------l~~~D~RT~ 203 (370)
T KOG1007|consen 138 LASMDD----NNIVLWSLDESSK-IVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDST---------LQFWDLRTM 203 (370)
T ss_pred eEEecc----CceEEEEcccCcc-hheeecccccccccceecccccCCCCccceEEEeCCCc---------EEEEEccch
Confidence 987752 3788888876653 001111111 12234558998 899998887765 899999865
Q ss_pred ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC--CceeeccCCCCC
Q 039497 524 GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG--SGLRRLTWNGYE 601 (642)
Q Consensus 524 ~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lt~~~~~ 601 (642)
+...-....+.. .+.++-|.|+-+.++.+..+.+ .|..||... ..++.|..+.-+
T Consensus 204 ~~~~sI~dAHgq-------~vrdlDfNpnkq~~lvt~gDdg----------------yvriWD~R~tk~pv~el~~HsHW 260 (370)
T KOG1007|consen 204 KKNNSIEDAHGQ-------RVRDLDFNPNKQHILVTCGDDG----------------YVRIWDTRKTKFPVQELPGHSHW 260 (370)
T ss_pred hhhcchhhhhcc-------eeeeccCCCCceEEEEEcCCCc----------------cEEEEeccCCCccccccCCCceE
Confidence 433222222322 5778999999999988887765 566666543 235667777666
Q ss_pred CCCcEEecC-CceEEee
Q 039497 602 NGTPAWHPG-NQLDLGK 617 (642)
Q Consensus 602 ~~~~~~s~d-g~~~~~~ 617 (642)
+..++|.|- .|++++.
T Consensus 261 vW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 261 VWAVRFNPEHDQLILSG 277 (370)
T ss_pred EEEEEecCccceEEEec
Confidence 677777775 3555654
No 237
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.85 E-value=0.0018 Score=60.75 Aligned_cols=200 Identities=9% Similarity=0.024 Sum_probs=110.3
Q ss_pred eeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCccccccccCCCEEEEEEeccCCCcc
Q 039497 36 EHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQI 115 (642)
Q Consensus 36 ~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (642)
....++|.+.+-...|+ |.|..++ ++..++...||.....=..|..... .....++...-++...-+.......
T Consensus 183 L~~Y~GH~GSVNsikfh-~s~~L~l-TaSGD~taHIW~~av~~~vP~~~a~-~~hSsEeE~e~sDe~~~d~d~~~~s--- 256 (481)
T KOG0300|consen 183 LATYTGHTGSVNSIKFH-NSGLLLL-TASGDETAHIWKAAVNWEVPSNNAP-SDHSSEEEEEHSDEHNRDTDSSEKS--- 256 (481)
T ss_pred eeeecccccceeeEEec-cccceEE-EccCCcchHHHHHhhcCcCCCCCCC-CCCCchhhhhccccccccccccccc---
Confidence 45778999999999999 9997666 6666888999985111100000000 0000000000011111111110000
Q ss_pred cccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC-
Q 039497 116 FKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG- 194 (642)
Q Consensus 116 ~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~- 194 (642)
-+.-.+++ ...|+.+.+......|=..|+.++.++-+. .--+||+++|+...+...+..
T Consensus 257 ---D~~tiRvP-----l~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR------------TAnlwDVEtge~v~~LtGHd~E 316 (481)
T KOG0300|consen 257 ---DGHTIRVP-----LMRLTGHRAVVSACDWLAGGQQMVTASWDR------------TANLWDVETGEVVNILTGHDSE 316 (481)
T ss_pred ---CCceeeee-----eeeeeccccceEehhhhcCcceeeeeeccc------------cceeeeeccCceeccccCcchh
Confidence 00122222 245566666666677888899998887655 344789999987776654442
Q ss_pred --cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEE
Q 039497 195 --WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIE 272 (642)
Q Consensus 195 --~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~ 272 (642)
...=.|..++++++ ..+.++.||.....=. ....+.++...+.+..|.-|-+ ++. ++....+.
T Consensus 317 LtHcstHptQrLVvTs-SrDtTFRLWDFReaI~--------sV~VFQGHtdtVTS~vF~~dd~-vVS-----gSDDrTvK 381 (481)
T KOG0300|consen 317 LTHCSTHPTQRLVVTS-SRDTTFRLWDFREAIQ--------SVAVFQGHTDTVTSVVFNTDDR-VVS-----GSDDRTVK 381 (481)
T ss_pred ccccccCCcceEEEEe-ccCceeEeccchhhcc--------eeeeecccccceeEEEEecCCc-eee-----cCCCceEE
Confidence 34555776777777 5677788886542211 2233344443455556654443 444 55666899
Q ss_pred EEEe
Q 039497 273 IYDL 276 (642)
Q Consensus 273 ~~d~ 276 (642)
+||+
T Consensus 382 vWdL 385 (481)
T KOG0300|consen 382 VWDL 385 (481)
T ss_pred Eeee
Confidence 9998
No 238
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.84 E-value=0.00026 Score=74.21 Aligned_cols=195 Identities=10% Similarity=0.085 Sum_probs=118.8
Q ss_pred ceeeeeecC-CCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEE
Q 039497 375 AFYNSWSPT-EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453 (642)
Q Consensus 375 ~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~ 453 (642)
...+.|..- .+.|+.++ ..+.+.+|++.. . .+.. ....+..++ ..+..+.|++-.-.|+..
T Consensus 90 ~~DVkW~~~~~NlIAT~s-------~nG~i~vWdlnk--~-----~rnk---~l~~f~EH~-Rs~~~ldfh~tep~iliS 151 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCS-------TNGVISVWDLNK--S-----IRNK---LLTVFNEHE-RSANKLDFHSTEPNILIS 151 (839)
T ss_pred hhhcccccchhhhheeec-------CCCcEEEEecCc--c-----ccch---hhhHhhhhc-cceeeeeeccCCccEEEe
Confidence 456778753 34444444 378899999965 1 1211 223445555 677788999888888888
Q ss_pred eCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCC-CEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC
Q 039497 454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG-DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG 532 (642)
Q Consensus 454 ~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG-~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~ 532 (642)
..++| .|-.||+...+. ..........+..+.|+|.- .+++...+.+. |.+||+..-..-.+....
T Consensus 152 GSQDg--~vK~~DlR~~~S---~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~--------lqlWDlRqp~r~~~k~~A 218 (839)
T KOG0269|consen 152 GSQDG--TVKCWDLRSKKS---KSTFRSNSESIRDVKFSPGYGNKFASIHDSGY--------LQLWDLRQPDRCEKKLTA 218 (839)
T ss_pred cCCCc--eEEEEeeecccc---cccccccchhhhceeeccCCCceEEEecCCce--------EEEeeccCchhHHHHhhc
Confidence 87776 566677765543 12222334567788999954 44444444433 889999654332222234
Q ss_pred CCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc--CCCCCCCCcEEecC
Q 039497 533 PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT--WNGYENGTPAWHPG 610 (642)
Q Consensus 533 ~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt--~~~~~~~~~~~s~d 610 (642)
+.+ .+..+.|+|++.+|+....++ .|-+|+..++++..+. .....+.-+.|-|+
T Consensus 219 H~G-------pV~c~nwhPnr~~lATGGRDK-----------------~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~ 274 (839)
T KOG0269|consen 219 HNG-------PVLCLNWHPNREWLATGGRDK-----------------MVKIWDMTDSRAKPKHTINTIAPVGRVKWRPA 274 (839)
T ss_pred ccC-------ceEEEeecCCCceeeecCCCc-----------------cEEEEeccCCCccceeEEeecceeeeeeeccC
Confidence 555 778899999999998777554 4445555544433222 22345678899999
Q ss_pred CceE-EeecCCCccc
Q 039497 611 NQLD-LGKLRLEDDI 624 (642)
Q Consensus 611 g~~~-~~~~~~~~~~ 624 (642)
.++. +++...++++
T Consensus 275 ~~~hLAtcsmv~dts 289 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTS 289 (839)
T ss_pred ccchhhhhhccccce
Confidence 8775 4454444443
No 239
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=97.84 E-value=0.00087 Score=62.37 Aligned_cols=147 Identities=14% Similarity=0.063 Sum_probs=95.0
Q ss_pred CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCC--CEEEEEecCCCCCCCCce
Q 039497 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG--DLIAFSSNRHNPDNVEAF 513 (642)
Q Consensus 436 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG--~~l~~~~~~~~~~~~~~~ 513 (642)
..+..+.|-|-..-++..+. -+..|.+||..|-+. ......++.+..-+|||=. ..|+....++ .
T Consensus 102 y~iss~~WyP~DtGmFtssS--FDhtlKVWDtnTlQ~----a~~F~me~~VYshamSp~a~sHcLiA~gtr~-------~ 168 (397)
T KOG4283|consen 102 YAISSAIWYPIDTGMFTSSS--FDHTLKVWDTNTLQE----AVDFKMEGKVYSHAMSPMAMSHCLIAAGTRD-------V 168 (397)
T ss_pred eeeeeeEEeeecCceeeccc--ccceEEEeeccccee----eEEeecCceeehhhcChhhhcceEEEEecCC-------C
Confidence 34556677775444544433 345789999988774 4444556667777888843 2344444433 3
Q ss_pred eEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee
Q 039497 514 SLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR 593 (642)
Q Consensus 514 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 593 (642)
+|.++|+.+|...+... ++.+ .+.++.|||...+++++....+.. ++|-+....+-..
T Consensus 169 ~VrLCDi~SGs~sH~Ls-GHr~-------~vlaV~Wsp~~e~vLatgsaDg~i--------------rlWDiRrasgcf~ 226 (397)
T KOG4283|consen 169 QVRLCDIASGSFSHTLS-GHRD-------GVLAVEWSPSSEWVLATGSADGAI--------------RLWDIRRASGCFR 226 (397)
T ss_pred cEEEEeccCCcceeeec-cccC-------ceEEEEeccCceeEEEecCCCceE--------------EEEEeecccceeE
Confidence 59999999998887765 5554 678999999999998887655421 4443333333222
Q ss_pred ec--------------cCCCCCCCCcEEecCCceEEee
Q 039497 594 RL--------------TWNGYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 594 ~l--------------t~~~~~~~~~~~s~dg~~~~~~ 617 (642)
.| +.+.+.+..++|+.||+++++.
T Consensus 227 ~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 227 VLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASC 264 (397)
T ss_pred EeecccCccCccccccccccceeeeeeecccchhhhhc
Confidence 22 2234566789999999988764
No 240
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=97.82 E-value=0.0065 Score=57.24 Aligned_cols=219 Identities=15% Similarity=0.066 Sum_probs=130.2
Q ss_pred EEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCC
Q 039497 336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414 (642)
Q Consensus 336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 414 (642)
.|.++. .+++. +-...|.++|+.+++..++.. ...+..+..++-...++..+. +..+++|+...
T Consensus 61 ~F~d~~-~~~~G---~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsW-------D~~ik~wD~R~---- 125 (323)
T KOG1036|consen 61 AFADES-TIVTG---GLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSW-------DKTIKFWDPRN---- 125 (323)
T ss_pred eccCCc-eEEEe---ccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEccc-------CccEEEEeccc----
Confidence 455433 34443 335789999999998877765 677888888886666666654 78899999864
Q ss_pred CCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC--CCCcccceeEe
Q 039497 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD--GPWIDTMPSWS 492 (642)
Q Consensus 415 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~--~~~~~~~~~~s 492 (642)
+....+......+. ..+-.|..|++... ..++.+||+..-.. ..+... .......++.-
T Consensus 126 -----------~~~~~~~d~~kkVy--~~~v~g~~LvVg~~---~r~v~iyDLRn~~~---~~q~reS~lkyqtR~v~~~ 186 (323)
T KOG1036|consen 126 -----------KVVVGTFDQGKKVY--CMDVSGNRLVVGTS---DRKVLIYDLRNLDE---PFQRRESSLKYQTRCVALV 186 (323)
T ss_pred -----------cccccccccCceEE--EEeccCCEEEEeec---CceEEEEEcccccc---hhhhccccceeEEEEEEEe
Confidence 11111111112233 33445667777442 23788899875442 122211 22334556777
Q ss_pred cCCCEEEEEecCCCCCCCCceeEEEEeCCCCce---EE----eeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCc
Q 039497 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL---RR----IHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV 565 (642)
Q Consensus 493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~---~~----l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~ 565 (642)
|++.-.+..+-++. +++=.++..+. +. .+.....+ .....++.+++|+|=.++++....++
T Consensus 187 pn~eGy~~sSieGR--------VavE~~d~s~~~~skkyaFkCHr~~~~~--~~~~yPVNai~Fhp~~~tfaTgGsDG-- 254 (323)
T KOG1036|consen 187 PNGEGYVVSSIEGR--------VAVEYFDDSEEAQSKKYAFKCHRLSEKD--TEIIYPVNAIAFHPIHGTFATGGSDG-- 254 (323)
T ss_pred cCCCceEEEeecce--------EEEEccCCchHHhhhceeEEeeecccCC--ceEEEEeceeEeccccceEEecCCCc--
Confidence 77766666666543 45444433310 00 00000000 00112567899999988888776665
Q ss_pred ccCCCCCCCCCCCCCcEEEEEcCC-CceeeccCCCCCCCCcEEecCCceEE
Q 039497 566 MAEPVSWPNQFQPYGDLYVVKLDG-SGLRRLTWNGYENGTPAWHPGNQLDL 615 (642)
Q Consensus 566 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lt~~~~~~~~~~~s~dg~~~~ 615 (642)
-+-.||+.. +.+.++......+.+++|+.||..|+
T Consensus 255 ---------------~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LA 290 (323)
T KOG1036|consen 255 ---------------IVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLA 290 (323)
T ss_pred ---------------eEEEccCcchhhhhhccCCCCceEEEEeccCCCeEE
Confidence 667777765 34777777777788999999997774
No 241
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.018 Score=59.35 Aligned_cols=205 Identities=10% Similarity=0.106 Sum_probs=129.4
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (642)
....+++|++++.... ....+.++|........... ......+.++|+++.+++.... .....++.++.
T Consensus 78 ~i~v~~~~~~vyv~~~--~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~------~~~~~vsvid~-- 147 (381)
T COG3391 78 GVAVNPAGNKVYVTTG--DSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAG------NGNNTVSVIDA-- 147 (381)
T ss_pred ceeeCCCCCeEEEecC--CCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecc------cCCceEEEEeC--
Confidence 4477888887666442 25678888866665444433 4477889999999999988742 13445555554
Q ss_pred CCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee-----CCCCCCccc
Q 039497 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ-----LTDGPWIDT 487 (642)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~-----l~~~~~~~~ 487 (642)
. ++. ....+..+. .....+++|+|++++.+.. ....|..+|.++... .. .........
T Consensus 148 ~-----t~~----~~~~~~vG~--~P~~~a~~p~g~~vyv~~~--~~~~v~vi~~~~~~v----~~~~~~~~~~~~~~P~ 210 (381)
T COG3391 148 A-----TNK----VTATIPVGN--TPTGVAVDPDGNKVYVTNS--DDNTVSVIDTSGNSV----VRGSVGSLVGVGTGPA 210 (381)
T ss_pred C-----CCe----EEEEEecCC--CcceEEECCCCCeEEEEec--CCCeEEEEeCCCcce----eccccccccccCCCCc
Confidence 2 121 222222221 2367899999999888773 445899999775442 32 111112335
Q ss_pred ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA 567 (642)
Q Consensus 488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~ 567 (642)
.+.++|||++++...... ....+.++|..++............ ....+..+|+|+.++......+
T Consensus 211 ~i~v~~~g~~~yV~~~~~-----~~~~v~~id~~~~~v~~~~~~~~~~-------~~~~v~~~p~g~~~yv~~~~~~--- 275 (381)
T COG3391 211 GIAVDPDGNRVYVANDGS-----GSNNVLKIDTATGNVTATDLPVGSG-------APRGVAVDPAGKAAYVANSQGG--- 275 (381)
T ss_pred eEEECCCCCEEEEEeccC-----CCceEEEEeCCCceEEEeccccccC-------CCCceeECCCCCEEEEEecCCC---
Confidence 679999999888887654 1245899998887665542111110 1346789999998887765532
Q ss_pred CCCCCCCCCCCCCcEEEEEcCCCcee
Q 039497 568 EPVSWPNQFQPYGDLYVVKLDGSGLR 593 (642)
Q Consensus 568 ~~~~~~~~~~~~~~l~~~~~~~~~~~ 593 (642)
.+..+|.....+.
T Consensus 276 -------------~V~vid~~~~~v~ 288 (381)
T COG3391 276 -------------TVSVIDGATDRVV 288 (381)
T ss_pred -------------eEEEEeCCCCcee
Confidence 6788777665543
No 242
>KOG4328 consensus WD40 protein [Function unknown]
Probab=97.80 E-value=0.0017 Score=64.12 Aligned_cols=190 Identities=15% Similarity=0.101 Sum_probs=112.3
Q ss_pred CccEEcCCCC-EEEEEecCCCceeEEEEECCCCC--eeE--Eee--cCCceeeeeecCCCE-EEEEEcCCCcccCCCeEE
Q 039497 333 SFPSFSPDGG-LIVFNHDFELNAGIKIAKSDGSK--RWT--LIK--DRTAFYNSWSPTEKH-VIYTSTGPIFQSERATVQ 404 (642)
Q Consensus 333 ~~~~~spdg~-~l~~~~~~~~~~~l~~~d~~~~~--~~~--l~~--~~~~~~~~~spdg~~-l~~~~~~~~~~~~~~~~~ 404 (642)
...+|+|..+ .++.+++. .++|-++|+.+.+ ... +.. ...+..+.|+|.... ++..+. ++.++
T Consensus 190 t~l~fHPt~~~~lva~GdK--~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy-------DGtiR 260 (498)
T KOG4328|consen 190 TSLAFHPTENRKLVAVGDK--GGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY-------DGTIR 260 (498)
T ss_pred EEEEecccCcceEEEEccC--CCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc-------Cceee
Confidence 3568899876 66666543 4556666664222 111 111 456889999996644 444443 78888
Q ss_pred EEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC
Q 039497 405 IARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW 484 (642)
Q Consensus 405 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~ 484 (642)
+.+++. . -.+ ....+.... .......|+.+...++|..+- | .+-++|..++.. ....+.-+..
T Consensus 261 ~~D~~~--~------i~e---~v~s~~~d~-~~fs~~d~~~e~~~vl~~~~~-G--~f~~iD~R~~~s--~~~~~~lh~k 323 (498)
T KOG4328|consen 261 LQDFEG--N------ISE---EVLSLDTDN-IWFSSLDFSAESRSVLFGDNV-G--NFNVIDLRTDGS--EYENLRLHKK 323 (498)
T ss_pred eeeecc--h------hhH---HHhhcCccc-eeeeeccccCCCccEEEeecc-c--ceEEEEeecCCc--cchhhhhhhc
Confidence 888765 1 110 111111122 345567788888778877643 2 555666655442 1344554555
Q ss_pred cccceeEecCCCEEEEEec-CCCCCCCCceeEEEEeCCCC--ceE-EeeecCCCCCCCcccccccceEEcCCCCEEEEEE
Q 039497 485 IDTMPSWSPKGDLIAFSSN-RHNPDNVEAFSLYVIKPDGS--GLR-RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560 (642)
Q Consensus 485 ~~~~~~~spdG~~l~~~~~-~~~~~~~~~~~l~~~d~~~~--~~~-~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~ 560 (642)
.+.++++.|--.+++.++. +.. +.+||+..- +.. .|....+.. .+.++.|||+|-.|+.+.
T Consensus 324 KI~sv~~NP~~p~~laT~s~D~T--------~kIWD~R~l~~K~sp~lst~~Hrr-------sV~sAyFSPs~gtl~TT~ 388 (498)
T KOG4328|consen 324 KITSVALNPVCPWFLATASLDQT--------AKIWDLRQLRGKASPFLSTLPHRR-------SVNSAYFSPSGGTLLTTC 388 (498)
T ss_pred ccceeecCCCCchheeecccCcc--------eeeeehhhhcCCCCcceecccccc-------eeeeeEEcCCCCceEeec
Confidence 7888999997777555544 433 778887642 221 233333333 678899999999988887
Q ss_pred ecC
Q 039497 561 NLG 563 (642)
Q Consensus 561 ~~~ 563 (642)
.+.
T Consensus 389 ~D~ 391 (498)
T KOG4328|consen 389 QDN 391 (498)
T ss_pred cCC
Confidence 665
No 243
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=97.78 E-value=0.00068 Score=65.22 Aligned_cols=159 Identities=16% Similarity=0.175 Sum_probs=100.1
Q ss_pred CCccEEcC--CCCEEEEEecCCCceeEEEEECCCCCeeE----Eee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEE
Q 039497 332 GSFPSFSP--DGGLIVFNHDFELNAGIKIAKSDGSKRWT----LIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQ 404 (642)
Q Consensus 332 ~~~~~~sp--dg~~l~~~~~~~~~~~l~~~d~~~~~~~~----l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 404 (642)
+..+.||| .|+ ++. ++....|+++...++.... ++. ...+..+.|||..+-+++... -++.++
T Consensus 214 Gy~LdWSp~~~g~-Lls---GDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS------~DgsIr 283 (440)
T KOG0302|consen 214 GYGLDWSPIKTGR-LLS---GDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCS------CDGSIR 283 (440)
T ss_pred ceeeecccccccc-ccc---CccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeee------cCceEE
Confidence 35678998 332 221 1344667777766654322 211 567889999999988888773 489999
Q ss_pred EEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC
Q 039497 405 IARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW 484 (642)
Q Consensus 405 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~ 484 (642)
||++.. . .+ +...++......+..+.|+.+-..|++. .++| .+.+||+..=+...++..+..+..
T Consensus 284 IWDiRs--~------~~----~~~~~~kAh~sDVNVISWnr~~~lLasG-~DdG--t~~iwDLR~~~~~~pVA~fk~Hk~ 348 (440)
T KOG0302|consen 284 IWDIRS--G------PK----KAAVSTKAHNSDVNVISWNRREPLLASG-GDDG--TLSIWDLRQFKSGQPVATFKYHKA 348 (440)
T ss_pred EEEecC--C------Cc----cceeEeeccCCceeeEEccCCcceeeec-CCCc--eEEEEEhhhccCCCcceeEEeccC
Confidence 999987 2 11 3444444443677788999877744443 3444 566677653221112566777778
Q ss_pred cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497 485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG 522 (642)
Q Consensus 485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~ 522 (642)
.+.++.|+|....++..+... .+|.+||+.-
T Consensus 349 pItsieW~p~e~s~iaasg~D-------~QitiWDlsv 379 (440)
T KOG0302|consen 349 PITSIEWHPHEDSVIAASGED-------NQITIWDLSV 379 (440)
T ss_pred CeeEEEeccccCceEEeccCC-------CcEEEEEeec
Confidence 889999999665544444332 2489999864
No 244
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.76 E-value=0.0078 Score=56.98 Aligned_cols=173 Identities=11% Similarity=0.153 Sum_probs=104.5
Q ss_pred eeEEEEE-CCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc
Q 039497 354 AGIKIAK-SDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK 432 (642)
Q Consensus 354 ~~l~~~d-~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 432 (642)
+.|.+|| .+......+.....+..+.+++| +|+++. ...+.+|.... +++ ....+..
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvvl--------~~~I~VytF~~--n~k----------~l~~~et 132 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVVL--------ENKIYVYTFPD--NPK----------LLHVIET 132 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEEe--------cCeEEEEEcCC--Chh----------heeeeec
Confidence 4556666 22223333444777888888764 566665 56778887754 211 2222211
Q ss_pred cC-CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCC
Q 039497 433 EE-TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVE 511 (642)
Q Consensus 433 ~~-~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~ 511 (642)
-. ......+.-+-+-..|+|-+.+.| +|-++|+..-+. .....+..+...+..++.+-+|..|+.++..++
T Consensus 133 ~~NPkGlC~~~~~~~k~~LafPg~k~G--qvQi~dL~~~~~-~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGT----- 204 (346)
T KOG2111|consen 133 RSNPKGLCSLCPTSNKSLLAFPGFKTG--QVQIVDLASTKP-NAPSIINAHDSDIACVALNLQGTLVATASTKGT----- 204 (346)
T ss_pred ccCCCceEeecCCCCceEEEcCCCccc--eEEEEEhhhcCc-CCceEEEcccCceeEEEEcCCccEEEEeccCcE-----
Confidence 11 011211222223456777666555 677777764331 012556667777788899999999999998775
Q ss_pred ceeEEEEeCCCCceE-EeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCc
Q 039497 512 AFSLYVIKPDGSGLR-RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV 565 (642)
Q Consensus 512 ~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~ 565 (642)
-|.++|..+|+.. .+.. +.+. -.+..++||||+.+|+..++.+..
T Consensus 205 --LIRIFdt~~g~~l~E~RR-G~d~------A~iy~iaFSp~~s~LavsSdKgTl 250 (346)
T KOG2111|consen 205 --LIRIFDTEDGTLLQELRR-GVDR------ADIYCIAFSPNSSWLAVSSDKGTL 250 (346)
T ss_pred --EEEEEEcCCCcEeeeeec-CCch------heEEEEEeCCCccEEEEEcCCCeE
Confidence 3788898776543 3333 3222 256789999999999999987753
No 245
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.73 E-value=0.011 Score=55.20 Aligned_cols=219 Identities=14% Similarity=0.119 Sum_probs=128.3
Q ss_pred CccEEcCCCCE-EEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497 333 SFPSFSPDGGL-IVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR 407 (642)
Q Consensus 333 ~~~~~spdg~~-l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~ 407 (642)
..+.++|.-.+ ++|... - ..-.+++|..+....++.. .....+-.|||||++||.+.++ +....+-+-+|+
T Consensus 71 Hgi~~~p~~~ravafARr-P-Gtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEnd--fd~~rGViGvYd 146 (366)
T COG3490 71 HGIAFHPALPRAVAFARR-P-GTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEND--FDPNRGVIGVYD 146 (366)
T ss_pred CCeecCCCCcceEEEEec-C-CceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCC--CCCCCceEEEEe
Confidence 34577776554 445442 2 2455667887776555443 2334566899999988877654 244566777888
Q ss_pred EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCC------C---------CceeEEEEECCCCcc
Q 039497 408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR------S---------GHKNLFVLDAVNGEF 472 (642)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~------~---------g~~~l~~~d~~~g~~ 472 (642)
... +-. ..-.+.... -..-.+.|++||+.|+.+... - -...|.++|..+|+.
T Consensus 147 ~r~--------~fq----rvgE~~t~G-iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~l 213 (366)
T COG3490 147 ARE--------GFQ----RVGEFSTHG-IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNL 213 (366)
T ss_pred ccc--------ccc----eecccccCC-cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccch
Confidence 764 110 222233332 234458999999999987641 1 145788888777876
Q ss_pred ccceeeCCC----CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-----CCCCCCccccc
Q 039497 473 NGDIRQLTD----GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-----PEGSGDVDRER 543 (642)
Q Consensus 473 ~~~~~~l~~----~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-----~~~~~~~~~~~ 543 (642)
+.+.+- ....+.++...+||+ ++|...-..+ ..+..-|.-.-..++.++.+.... ... +
T Consensus 214 ---iekh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G~-~~d~ppLvg~~~~g~~l~~~~~pee~~~~~an-------Y 281 (366)
T COG3490 214 ---IEKHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRGP-RNDLPPLVGHFRKGEPLEFLDLPEEQTAAFAN-------Y 281 (366)
T ss_pred ---hhhccCchhhhhcceeeeeeCCCCc-EEEEEEeeCC-CccCCcceeeccCCCcCcccCCCHHHHHHHHh-------h
Confidence 444321 123456778889997 5555443221 112233444444444444332210 111 4
Q ss_pred ccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc
Q 039497 544 INHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596 (642)
Q Consensus 544 ~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt 596 (642)
+.+++...+-.+++.++..++ ....||.+++.+....
T Consensus 282 igsiA~n~~~glV~lTSP~GN----------------~~vi~da~tG~vv~~a 318 (366)
T COG3490 282 IGSIAANRRDGLVALTSPRGN----------------RAVIWDAATGAVVSEA 318 (366)
T ss_pred hhheeecccCCeEEEecCCCC----------------eEEEEEcCCCcEEecc
Confidence 557777777788888887765 5677899998865443
No 246
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=97.70 E-value=0.045 Score=57.80 Aligned_cols=220 Identities=15% Similarity=0.137 Sum_probs=132.1
Q ss_pred ccEEcCCCCEEEEEecC--CCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 334 FPSFSPDGGLIVFNHDF--ELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~--~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
..+.|||++.+++..+. +....|.+.|+.+++............++|.+|++.++|+...+ .....++|....
T Consensus 133 ~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~~d~----~~rp~kv~~h~~- 207 (682)
T COG1770 133 AASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTRLDE----NHRPDKVWRHRL- 207 (682)
T ss_pred eeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhcccccceEEecCCCeEEEEEEcC----CCCcceEEEEec-
Confidence 55789999999997653 44567888999988755544455677899999999999998642 223445666555
Q ss_pred cCCCCCCCCCccccceEEccccC-CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccccee
Q 039497 412 LDPSDDNNREEIPCDVKILTKEE-TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS 490 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~ 490 (642)
. ... ..-+.+.... ......+.-|...++|+.........++++++.+.... ..+.+..... .....
T Consensus 208 -g------t~~--~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~--~p~vv~pr~~-g~eY~ 275 (682)
T COG1770 208 -G------TPG--SSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEA--EPKVVLPREN-GVEYS 275 (682)
T ss_pred -C------CCC--CcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCC--ceEEEEEcCC-CcEEe
Confidence 1 100 0222232222 12223344566788888877666777999999886553 1233332221 11222
Q ss_pred EecCCCEEEEEecCCCCCCCCceeEEEEeC--CCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccC
Q 039497 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKP--DGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAE 568 (642)
Q Consensus 491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~ 568 (642)
...-|.++++.++... ....|+...+ .....+.+...... ..--.|+.-..+|+....+++..
T Consensus 276 ~eh~~d~f~i~sN~~g----knf~l~~ap~~~~~~~w~~~I~h~~~---------~~l~~~~~f~~~lVl~eR~~glp-- 340 (682)
T COG1770 276 VEHGGDRFYILSNADG----KNFKLVRAPVSADKSNWRELIPHRED---------VRLEGVDLFADHLVLLERQEGLP-- 340 (682)
T ss_pred eeecCcEEEEEecCCC----cceEEEEccCCCChhcCeeeeccCCC---------ceeeeeeeeccEEEEEecccCCc--
Confidence 3344777777777653 4566776655 11233333332221 23345666677888887776643
Q ss_pred CCCCCCCCCCCCcEEEEEcCCCceeeccC
Q 039497 569 PVSWPNQFQPYGDLYVVKLDGSGLRRLTW 597 (642)
Q Consensus 569 ~~~~~~~~~~~~~l~~~~~~~~~~~~lt~ 597 (642)
.|++.+...++...|..
T Consensus 341 ------------~v~v~~~~~~~~~~i~f 357 (682)
T COG1770 341 ------------RVVVRDRKTGEERGIAF 357 (682)
T ss_pred ------------eEEEEecCCCceeeEEe
Confidence 88888887666555554
No 247
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.68 E-value=0.094 Score=54.26 Aligned_cols=103 Identities=12% Similarity=0.177 Sum_probs=57.7
Q ss_pred ccccCCCEEEEEEeccCCCcccccccceEEEEccCCceE-ecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCee
Q 039497 95 RPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFT-RLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNT 173 (642)
Q Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~ 173 (642)
.|.+.++.+++.... +.|+.++..+|+.. +..........|.+ ++..|++...+.
T Consensus 60 ~p~v~~~~v~v~~~~----------g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g------------ 115 (377)
T TIGR03300 60 QPAVAGGKVYAADAD----------GTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKG------------ 115 (377)
T ss_pred ceEEECCEEEEECCC----------CeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCC------------
Confidence 456677777775543 26899998877654 22212222233443 566776654333
Q ss_pred eEEEEEecCCCceeEeecCC---CcceEeeCCeEEEEEecCCCceEEEEEecCCCc
Q 039497 174 DIVVFQESDPNKRVIVCERG---GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENL 226 (642)
Q Consensus 174 ~l~~~~~~~g~~~~l~~~~~---~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~ 226 (642)
.|+.++.++|+..--....+ ..|.. .++.+++.. .+| .|+.+|..+|.
T Consensus 116 ~l~ald~~tG~~~W~~~~~~~~~~~p~v-~~~~v~v~~--~~g--~l~a~d~~tG~ 166 (377)
T TIGR03300 116 EVIALDAEDGKELWRAKLSSEVLSPPLV-ANGLVVVRT--NDG--RLTALDAATGE 166 (377)
T ss_pred EEEEEECCCCcEeeeeccCceeecCCEE-ECCEEEEEC--CCC--eEEEEEcCCCc
Confidence 68889988887543222111 12333 234444432 244 78889988773
No 248
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.66 E-value=0.0018 Score=66.86 Aligned_cols=224 Identities=13% Similarity=0.065 Sum_probs=125.8
Q ss_pred cCCCCEEEEEecCCCceeEEEEECCCCCeeE--Eee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 338 SPDGGLIVFNHDFELNAGIKIAKSDGSKRWT--LIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 338 spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~--l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
++.+.+.+|.+.+++.-.+|-.+-+.++... +.. ...+.++...-+|+.|+-++. +..+.+|....
T Consensus 33 da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~Ss-------DtTVK~W~~~~- 104 (735)
T KOG0308|consen 33 DAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASS-------DTTVKVWNAHK- 104 (735)
T ss_pred cCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecC-------CceEEEeeccc-
Confidence 4444455666655554444444444443211 111 334566677778888877764 78999999866
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEE-CCCCCeEEEEeCCCCceeEEEEECCCCcc--ccceeeC-----C-CC
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSC-SPDGKFLVFRSGRSGHKNLFVLDAVNGEF--NGDIRQL-----T-DG 482 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-SpDg~~l~~~~~~~g~~~l~~~d~~~g~~--~~~~~~l-----~-~~ 482 (642)
+ + ......|..+. .++..+++ -++. .++.+.. -+.+|++||+.+|.. +.....+ . ..
T Consensus 105 -~------~---~~c~stir~H~-DYVkcla~~ak~~-~lvaSgG--LD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~ 170 (735)
T KOG0308|consen 105 -D------N---TFCMSTIRTHK-DYVKCLAYIAKNN-ELVASGG--LDRKIFLWDINTGTATLVASFNNVTVNSLGSGP 170 (735)
T ss_pred -C------c---chhHhhhhccc-chheeeeecccCc-eeEEecC--CCccEEEEEccCcchhhhhhccccccccCCCCC
Confidence 2 1 01556666666 67777777 4444 4444433 245899999998841 0000111 1 11
Q ss_pred CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497 483 PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL 562 (642)
Q Consensus 483 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~ 562 (642)
...+.+++..+.|. ++..+... ..|.+||..+.+...-.. ++.. ++..+..++||++++.++.+
T Consensus 171 k~siYSLA~N~t~t-~ivsGgte-------k~lr~wDprt~~kimkLr-GHTd-------NVr~ll~~dDGt~~ls~sSD 234 (735)
T KOG0308|consen 171 KDSIYSLAMNQTGT-IIVSGGTE-------KDLRLWDPRTCKKIMKLR-GHTD-------NVRVLLVNDDGTRLLSASSD 234 (735)
T ss_pred ccceeeeecCCcce-EEEecCcc-------cceEEeccccccceeeee-cccc-------ceEEEEEcCCCCeEeecCCC
Confidence 12344556667774 33333322 238999998765543333 5554 68889999999999999888
Q ss_pred CCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCceEEe
Q 039497 563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQLDLG 616 (642)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~~~~~ 616 (642)
+ -|-+|++.-.. +..+..+...+.++.-+|+=.++.+
T Consensus 235 g-----------------tIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYs 272 (735)
T KOG0308|consen 235 G-----------------TIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYS 272 (735)
T ss_pred c-----------------eEEeeeccccceeeeEEeccCceEEEeeCCCcceEEe
Confidence 7 56666765543 2223333322334444444444443
No 249
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.63 E-value=0.016 Score=59.17 Aligned_cols=151 Identities=11% Similarity=0.014 Sum_probs=86.9
Q ss_pred CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee---CCCCCCc-----ccceeEecCCCEEEEEecCCCC
Q 039497 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ---LTDGPWI-----DTMPSWSPKGDLIAFSSNRHNP 507 (642)
Q Consensus 436 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~---l~~~~~~-----~~~~~~spdG~~l~~~~~~~~~ 507 (642)
+.+..+..++-...|++... + ..+-.||..+...++.+.. +...++. ++.+.|+-||-.+++....+.
T Consensus 176 ~~lN~v~in~~hgLla~Gt~-~--g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~- 251 (703)
T KOG2321|consen 176 GELNVVSINEEHGLLACGTE-D--GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS- 251 (703)
T ss_pred ccceeeeecCccceEEeccc-C--ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc-
Confidence 45566777776655555442 2 3566777766554111111 2223333 667799988988988887765
Q ss_pred CCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCC--CCEEEEEEecCCcccCCCCCCCCCCCCCcEEEE
Q 039497 508 DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD--GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVV 585 (642)
Q Consensus 508 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~D--g~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 585 (642)
+++||+...++-.+...+... ++..+.|-+. +..|+ +.+.. -|-.|
T Consensus 252 -------v~iyDLRa~~pl~~kdh~~e~-------pi~~l~~~~~~~q~~v~-S~Dk~-----------------~~kiW 299 (703)
T KOG2321|consen 252 -------VLIYDLRASKPLLVKDHGYEL-------PIKKLDWQDTDQQNKVV-SMDKR-----------------ILKIW 299 (703)
T ss_pred -------EEEEEcccCCceeecccCCcc-------ceeeecccccCCCceEE-ecchH-----------------Hhhhc
Confidence 999999988776665443333 4455666443 33333 33221 34455
Q ss_pred EcCCCceeeccCCCCCCCCcEEecCC-ceEEeecCCCc
Q 039497 586 KLDGSGLRRLTWNGYENGTPAWHPGN-QLDLGKLRLED 622 (642)
Q Consensus 586 ~~~~~~~~~lt~~~~~~~~~~~s~dg-~~~~~~~~~~~ 622 (642)
+...|++.........+.+..+-|++ .+|++..+..+
T Consensus 300 d~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m 337 (703)
T KOG2321|consen 300 DECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKM 337 (703)
T ss_pred ccccCCceeeccccCCcCceeeecCCceEEEecCCCcc
Confidence 76666544333333345677777875 66666655444
No 250
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.58 E-value=0.00038 Score=66.05 Aligned_cols=189 Identities=13% Similarity=0.165 Sum_probs=119.5
Q ss_pred cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412 (642)
Q Consensus 335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (642)
+.+.-|.+ ++..+ .....|.++|.++++...... -..+..+.|+. .+++.++. +..+.+|++...
T Consensus 241 LCLqyd~r-viisG--SSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSk-------DrsiaVWdm~sp- 307 (499)
T KOG0281|consen 241 LCLQYDER-VIVSG--SSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSK-------DRSIAVWDMASP- 307 (499)
T ss_pred Eeeeccce-EEEec--CCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecC-------CceeEEEeccCc-
Confidence 34444555 33322 335678888998887644332 45567788863 45665553 678999999761
Q ss_pred CCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEe
Q 039497 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492 (642)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~s 492 (642)
... ...+.|..+. ..+..+.| |.|+|+.++ |+..|..|++.+++. ++.|..+...+...++-
T Consensus 308 ------s~i---t~rrVLvGHr-AaVNvVdf--d~kyIVsAS---gDRTikvW~~st~ef---vRtl~gHkRGIAClQYr 369 (499)
T KOG0281|consen 308 ------TDI---TLRRVLVGHR-AAVNVVDF--DDKYIVSAS---GDRTIKVWSTSTCEF---VRTLNGHKRGIACLQYR 369 (499)
T ss_pred ------hHH---HHHHHHhhhh-hheeeecc--ccceEEEec---CCceEEEEeccceee---ehhhhcccccceehhcc
Confidence 110 0112233333 44444555 567888777 566899999999998 77787776665555654
Q ss_pred cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCC
Q 039497 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSW 572 (642)
Q Consensus 493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~ 572 (642)
|+.++-.+.+.. |.+||+..|..-++.. +++. -+..+.| |.++|+-.+-++
T Consensus 370 --~rlvVSGSSDnt--------IRlwdi~~G~cLRvLe-GHEe-------LvRciRF--d~krIVSGaYDG--------- 420 (499)
T KOG0281|consen 370 --DRLVVSGSSDNT--------IRLWDIECGACLRVLE-GHEE-------LVRCIRF--DNKRIVSGAYDG--------- 420 (499)
T ss_pred --CeEEEecCCCce--------EEEEeccccHHHHHHh-chHH-------hhhheee--cCceeeeccccc---------
Confidence 776665555554 9999998887655544 4444 4556677 678887766554
Q ss_pred CCCCCCCCcEEEEEcCCCc
Q 039497 573 PNQFQPYGDLYVVKLDGSG 591 (642)
Q Consensus 573 ~~~~~~~~~l~~~~~~~~~ 591 (642)
.|-+||+..+.
T Consensus 421 --------kikvWdl~aal 431 (499)
T KOG0281|consen 421 --------KIKVWDLQAAL 431 (499)
T ss_pred --------eEEEEeccccc
Confidence 67777876543
No 251
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=97.56 E-value=0.00014 Score=47.10 Aligned_cols=35 Identities=40% Similarity=0.802 Sum_probs=27.3
Q ss_pred EccccCCCCccCcEECCCCCeEEEEeCCC--CceeEEE
Q 039497 429 ILTKEETGNNAFPSCSPDGKFLVFRSGRS--GHKNLFV 464 (642)
Q Consensus 429 ~l~~~~~~~~~~~~~SpDg~~l~~~~~~~--g~~~l~~ 464 (642)
+++... .....++|||||++|+|.+.+. |..+||+
T Consensus 3 ~~t~~~-~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 3 QLTNSP-GDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EES-SS-SSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred CcccCC-ccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 445555 6778899999999999999998 8888875
No 252
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.52 E-value=0.015 Score=54.79 Aligned_cols=177 Identities=16% Similarity=0.140 Sum_probs=112.0
Q ss_pred CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEE
Q 039497 374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453 (642)
Q Consensus 374 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~ 453 (642)
.+....|-.-|++++..+. +....+|+++. +. ....|+.+. ....+..-.|.. .|+.+
T Consensus 274 vV~a~dWL~gg~Q~vTaSW-------DRTAnlwDVEt--------ge-----~v~~LtGHd-~ELtHcstHptQ-rLVvT 331 (481)
T KOG0300|consen 274 VVSACDWLAGGQQMVTASW-------DRTANLWDVET--------GE-----VVNILTGHD-SELTHCSTHPTQ-RLVVT 331 (481)
T ss_pred ceEehhhhcCcceeeeeec-------cccceeeeecc--------Cc-----eeccccCcc-hhccccccCCcc-eEEEE
Confidence 3455678888898888875 56778999987 33 566777776 667777777765 56666
Q ss_pred eCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCC
Q 039497 454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP 533 (642)
Q Consensus 454 ~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~ 533 (642)
+.++. ...+||....-. .+..+..+...+.+..|.-|.+ ++-.+++.. |.+||+..-....-+. -.
T Consensus 332 sSrDt--TFRLWDFReaI~--sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrT--------vKvWdLrNMRsplATI-Rt 397 (481)
T KOG0300|consen 332 SSRDT--TFRLWDFREAIQ--SVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRT--------VKVWDLRNMRSPLATI-RT 397 (481)
T ss_pred eccCc--eeEeccchhhcc--eeeeecccccceeEEEEecCCc-eeecCCCce--------EEEeeeccccCcceee-ec
Confidence 66655 445566542111 0233344555678889998776 555554443 8999997654332221 11
Q ss_pred CCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccC-----CCCCCCCcEEe
Q 039497 534 EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW-----NGYENGTPAWH 608 (642)
Q Consensus 534 ~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~-----~~~~~~~~~~s 608 (642)
.. .+..++.|.-+..|++-.+ +.+|-++|++|..+.+|.. +...+...+|+
T Consensus 398 dS-------~~NRvavs~g~~iIAiPhD-----------------NRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ 453 (481)
T KOG0300|consen 398 DS-------PANRVAVSKGHPIIAIPHD-----------------NRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWL 453 (481)
T ss_pred CC-------ccceeEeecCCceEEeccC-----------------CceEEEEecCCCccccCCcccccccceeeeeeecc
Confidence 11 3466788877776655432 2378888999998888874 23445666776
Q ss_pred cC
Q 039497 609 PG 610 (642)
Q Consensus 609 ~d 610 (642)
.+
T Consensus 454 ee 455 (481)
T KOG0300|consen 454 EE 455 (481)
T ss_pred cc
Confidence 54
No 253
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.52 E-value=0.00021 Score=74.22 Aligned_cols=181 Identities=14% Similarity=0.160 Sum_probs=118.3
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeE-Eee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWT-LIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~-l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
..+.|+++...|+-. ...+.|-++|++..+..+ |+- ...+..+.|+|-|.+.+-.+ .+.++.+|++..
T Consensus 74 eSl~f~~~E~Llaag---sasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gS-------tdtd~~iwD~Rk 143 (825)
T KOG0267|consen 74 ESLTFDTSERLLAAG---SASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGS-------TDTDLKIWDIRK 143 (825)
T ss_pred eeeecCcchhhhccc---ccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecccc-------ccccceehhhhc
Confidence 455677777655443 234578888998766443 322 44567788999988775444 377889999875
Q ss_pred ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccccee
Q 039497 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS 490 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~ 490 (642)
. | .......+. +.+..+.|+|||+|++-... +..+-+||+..|+. +..+..+.+.+..+.
T Consensus 144 --~------G-----c~~~~~s~~-~vv~~l~lsP~Gr~v~~g~e---d~tvki~d~~agk~---~~ef~~~e~~v~sle 203 (825)
T KOG0267|consen 144 --K------G-----CSHTYKSHT-RVVDVLRLSPDGRWVASGGE---DNTVKIWDLTAGKL---SKEFKSHEGKVQSLE 203 (825)
T ss_pred --c------C-----ceeeecCCc-ceeEEEeecCCCceeeccCC---cceeeeeccccccc---ccccccccccccccc
Confidence 2 4 444444444 66778899999999886653 34788999988886 666666667777778
Q ss_pred EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEE
Q 039497 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559 (642)
Q Consensus 491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~ 559 (642)
|+|..-.++-.+.+.. +..||+++ ...+...+.+. ..+....|+|||+.++-.
T Consensus 204 ~hp~e~Lla~Gs~d~t--------v~f~dlet--fe~I~s~~~~~------~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 204 FHPLEVLLAPGSSDRT--------VRFWDLET--FEVISSGKPET------DGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred cCchhhhhccCCCCce--------eeeeccce--eEEeeccCCcc------CCceeeeecCCceeeecC
Confidence 8887644444444433 78888753 33333322111 145678999999866543
No 254
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=97.48 E-value=0.046 Score=51.25 Aligned_cols=189 Identities=11% Similarity=0.126 Sum_probs=111.9
Q ss_pred ccEEcCCC-CEEEEEecCCCceeEEEEECCCC----CeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497 334 FPSFSPDG-GLIVFNHDFELNAGIKIAKSDGS----KRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR 407 (642)
Q Consensus 334 ~~~~spdg-~~l~~~~~~~~~~~l~~~d~~~~----~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~ 407 (642)
.+.|..-. ++|...+ -+....|| |++.+ ..++|.. +..+++++|+..+..++... ..++.+++++
T Consensus 155 SFDWne~dp~~igtSS-iDTTCTiW--die~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASv------gaDGSvRmFD 225 (364)
T KOG0290|consen 155 SFDWNEVDPNLIGTSS-IDTTCTIW--DIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASV------GADGSVRMFD 225 (364)
T ss_pred ccccccCCcceeEeec-ccCeEEEE--EEeeccccceeeEEEecCcceeEEEeccCccceEEEe------cCCCcEEEEE
Confidence 44665433 4444333 24444555 55544 2455554 88899999999888776665 4588999999
Q ss_pred EEeecCCCCCCCCCccccceEEccccC--CCCccCcEECCC-CCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC
Q 039497 408 VSFQLDPSDDNNREEIPCDVKILTKEE--TGNNAFPSCSPD-GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW 484 (642)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~SpD-g~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~ 484 (642)
+.. . . ....+-..+ ......++|++. -++++.... +..+|.++|+.--. .++..|..+..
T Consensus 226 LR~--l------e-----HSTIIYE~p~~~~pLlRLswnkqDpnymATf~~--dS~~V~iLDiR~P~--tpva~L~~H~a 288 (364)
T KOG0290|consen 226 LRS--L------E-----HSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAM--DSNKVVILDIRVPC--TPVARLRNHQA 288 (364)
T ss_pred ecc--c------c-----cceEEecCCCCCCcceeeccCcCCchHHhhhhc--CCceEEEEEecCCC--cceehhhcCcc
Confidence 865 1 1 112221111 012333556553 344443332 34478888887433 22677888888
Q ss_pred cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce----EEeeecCCCCCCCcccccccceEEcC-CCCEEEEE
Q 039497 485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL----RRIHVAGPEGSGDVDRERINHVCFSA-DGEWLLFT 559 (642)
Q Consensus 485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~S~-Dg~~l~~~ 559 (642)
.++.++|.|..+.-+.+..+. .+..+||+..--. .++......+ .+..+.|++ .+.+|+..
T Consensus 289 ~VNgIaWaPhS~~hictaGDD-------~qaliWDl~q~~~~~~~dPilay~a~~-------EVNqi~Ws~~~~Dwiai~ 354 (364)
T KOG0290|consen 289 SVNGIAWAPHSSSHICTAGDD-------CQALIWDLQQMPRENGEDPILAYTAGG-------EVNQIQWSSSQPDWIAIC 354 (364)
T ss_pred cccceEecCCCCceeeecCCc-------ceEEEEecccccccCCCCchhhhhccc-------eeeeeeecccCCCEEEEE
Confidence 999999999876666665543 3588899865322 1122112233 678899984 56788777
Q ss_pred Eec
Q 039497 560 ANL 562 (642)
Q Consensus 560 ~~~ 562 (642)
.+.
T Consensus 355 ~~k 357 (364)
T KOG0290|consen 355 FGK 357 (364)
T ss_pred ecC
Confidence 654
No 255
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=97.45 E-value=0.0027 Score=61.30 Aligned_cols=142 Identities=17% Similarity=0.251 Sum_probs=90.8
Q ss_pred CCccCcEECC--CCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCce
Q 039497 436 GNNAFPSCSP--DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF 513 (642)
Q Consensus 436 ~~~~~~~~Sp--Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~ 513 (642)
..-+.+.||| .|+. + + .+-...|++|...+|........++.+...+..++|||.-+.++++.....
T Consensus 212 ~EGy~LdWSp~~~g~L-l--s-GDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg------- 280 (440)
T KOG0302|consen 212 GEGYGLDWSPIKTGRL-L--S-GDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDG------- 280 (440)
T ss_pred ccceeeeccccccccc-c--c-CccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCc-------
Confidence 3445678998 2321 1 1 113447888888888752223445666677888999998887777766553
Q ss_pred eEEEEeCCCCce-EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcC---C
Q 039497 514 SLYVIKPDGSGL-RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLD---G 589 (642)
Q Consensus 514 ~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~ 589 (642)
.|.+||+..+.. ..+....+++ .++.+.|+-+-..|++...++ .+-+||+. .
T Consensus 281 sIrIWDiRs~~~~~~~~~kAh~s-------DVNVISWnr~~~lLasG~DdG-----------------t~~iwDLR~~~~ 336 (440)
T KOG0302|consen 281 SIRIWDIRSGPKKAAVSTKAHNS-------DVNVISWNRREPLLASGGDDG-----------------TLSIWDLRQFKS 336 (440)
T ss_pred eEEEEEecCCCccceeEeeccCC-------ceeeEEccCCcceeeecCCCc-----------------eEEEEEhhhccC
Confidence 288899877632 2333334444 578899998888666655554 45555654 2
Q ss_pred Cc-eeeccCCCCCCCCcEEecCCc
Q 039497 590 SG-LRRLTWNGYENGTPAWHPGNQ 612 (642)
Q Consensus 590 ~~-~~~lt~~~~~~~~~~~s~dg~ 612 (642)
++ +..+..+...+.++.|+|...
T Consensus 337 ~~pVA~fk~Hk~pItsieW~p~e~ 360 (440)
T KOG0302|consen 337 GQPVATFKYHKAPITSIEWHPHED 360 (440)
T ss_pred CCcceeEEeccCCeeEEEeccccC
Confidence 33 345666777889999998653
No 256
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.43 E-value=0.032 Score=54.20 Aligned_cols=233 Identities=12% Similarity=0.089 Sum_probs=125.5
Q ss_pred EEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
.|.- |++.+|.. ....++.+-|+++.+..-+.. .+.++.+.-+|..+.++.++. .+.+.+|++...
T Consensus 112 ~F~~-~N~~~~SG--~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~-------~~~V~~~D~Rd~ 181 (609)
T KOG4227|consen 112 EFDL-ENRFLYSG--ERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTR-------AKLVSFIDNRDR 181 (609)
T ss_pred EEcc-CCeeEecC--CCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEec-------CceEEEEeccCC
Confidence 4433 44555644 335677778888877655544 346888888998888877764 677888888651
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccc--cceeeCCCCCCcccce
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN--GDIRQLTDGPWIDTMP 489 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~--~~~~~l~~~~~~~~~~ 489 (642)
.+ -+ .+..+.... .......|.|-.-.|+.+.+..+...||-.-......- +.-.-|..........
T Consensus 182 ~~-----~~-----~~~~~AN~~-~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~ 250 (609)
T KOG4227|consen 182 QN-----PI-----SLVLPANSG-KNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGS 250 (609)
T ss_pred CC-----CC-----ceeeecCCC-ccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhe
Confidence 11 11 333334433 34456788888777776666555555554332211100 0001122222223567
Q ss_pred eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec-CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccC
Q 039497 490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAE 568 (642)
Q Consensus 490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~ 568 (642)
.|+|.|+.++......- -..+|+-+...-.+... +.++-| .-+.+.+..|-.|-. |+..+..
T Consensus 251 ~~~~~G~Q~msiRR~~~--------P~~~D~~S~R~~V~k~D~N~~GY~--N~~T~KS~~F~~D~~-v~tGSD~------ 313 (609)
T KOG4227|consen 251 LWSPSGNQFMSIRRGKC--------PLYFDFISQRCFVLKSDHNPNGYC--NIKTIKSMTFIDDYT-VATGSDH------ 313 (609)
T ss_pred eeCCCCCeehhhhccCC--------CEEeeeecccceeEeccCCCCcce--eeeeeeeeeeeccee-eeccCcc------
Confidence 89999998876655432 24566654333333322 111200 001234566655533 4433332
Q ss_pred CCCCCCCCCCCCcEEEEEcC----C--------------------CceeeccCCCCCCCCcEEecCCceEEee
Q 039497 569 PVSWPNQFQPYGDLYVVKLD----G--------------------SGLRRLTWNGYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 569 ~~~~~~~~~~~~~l~~~~~~----~--------------------~~~~~lt~~~~~~~~~~~s~dg~~~~~~ 617 (642)
+.||.|.+. . ++++.|..+......+.|+|-..+|+++
T Consensus 314 -----------~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SS 375 (609)
T KOG4227|consen 314 -----------WGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSS 375 (609)
T ss_pred -----------cceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEecc
Confidence 245555431 1 1234455555566788999988888775
No 257
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=97.42 E-value=0.016 Score=52.72 Aligned_cols=139 Identities=11% Similarity=0.059 Sum_probs=82.0
Q ss_pred CccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeE-ecCCCEEEEEecCCCCCCCCceeE
Q 039497 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW-SPKGDLIAFSSNRHNPDNVEAFSL 515 (642)
Q Consensus 437 ~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~-spdG~~l~~~~~~~~~~~~~~~~l 515 (642)
.+..+.+-|....|+++. |+..+|-+|+++|+. .+.+..+..++..++- +..+. |+..+.++. +
T Consensus 116 eINam~ldP~enSi~~Ag---GD~~~y~~dlE~G~i---~r~~rGHtDYvH~vv~R~~~~q-ilsG~EDGt--------v 180 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAG---GDGVIYQVDLEDGRI---QREYRGHTDYVHSVVGRNANGQ-ILSGAEDGT--------V 180 (325)
T ss_pred ccceeEeccCCCcEEEec---CCeEEEEEEecCCEE---EEEEcCCcceeeeeeecccCcc-eeecCCCcc--------E
Confidence 345567788888898887 677999999999996 4455556556665554 44554 555555554 8
Q ss_pred EEEeCCCCceEEeeecCCCCCCCccccccc--ceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee
Q 039497 516 YVIKPDGSGLRRIHVAGPEGSGDVDRERIN--HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR 593 (642)
Q Consensus 516 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 593 (642)
.+||.++++.......... .++-|+... -.+..-+..+|+-... ..+-+|++...+.+
T Consensus 181 RvWd~kt~k~v~~ie~yk~--~~~lRp~~g~wigala~~edWlvCGgG------------------p~lslwhLrsse~t 240 (325)
T KOG0649|consen 181 RVWDTKTQKHVSMIEPYKN--PNLLRPDWGKWIGALAVNEDWLVCGGG------------------PKLSLWHLRSSEST 240 (325)
T ss_pred EEEeccccceeEEeccccC--hhhcCcccCceeEEEeccCceEEecCC------------------CceeEEeccCCCce
Confidence 9999988876655432111 011111111 1233345555544322 16777788887766
Q ss_pred eccCCCCCCCCcEEecC
Q 039497 594 RLTWNGYENGTPAWHPG 610 (642)
Q Consensus 594 ~lt~~~~~~~~~~~s~d 610 (642)
++-.-+.....+.|-.|
T Consensus 241 ~vfpipa~v~~v~F~~d 257 (325)
T KOG0649|consen 241 CVFPIPARVHLVDFVDD 257 (325)
T ss_pred EEEecccceeEeeeecc
Confidence 66554444444445443
No 258
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.40 E-value=0.018 Score=58.89 Aligned_cols=221 Identities=14% Similarity=0.131 Sum_probs=128.7
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
..+..||||+++.-++ .-..+|.++|+..-....-.. ...+.-...|-|=.++++... +..+.+...
T Consensus 55 t~ik~s~DGqY~lAtG--~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~-------DR~IefHak-- 123 (703)
T KOG2321|consen 55 TRIKVSPDGQYLLATG--TYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQN-------DRTIEFHAK-- 123 (703)
T ss_pred ceeEecCCCcEEEEec--ccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeec-------Cceeeehhh--
Confidence 3567899999887754 336788888887654333222 222333344555566666653 223332221
Q ss_pred ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccccee
Q 039497 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS 490 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~ 490 (642)
.|-. -..++.... .....-.||- -|++... ...||++++..|.. +..+......++.+.
T Consensus 124 --------~G~h---y~~RIP~~G-RDm~y~~~sc---Dly~~gs---g~evYRlNLEqGrf---L~P~~~~~~~lN~v~ 182 (703)
T KOG2321|consen 124 --------YGRH---YRTRIPKFG-RDMKYHKPSC---DLYLVGS---GSEVYRLNLEQGRF---LNPFETDSGELNVVS 182 (703)
T ss_pred --------cCee---eeeecCcCC-ccccccCCCc---cEEEeec---CcceEEEEcccccc---ccccccccccceeee
Confidence 1100 111222111 1111112332 2444432 24899999999998 777776667778888
Q ss_pred EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCC--C-CCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE--G-SGDVDRERINHVCFSADGEWLLFTANLGAVMA 567 (642)
Q Consensus 491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~--~-~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~ 567 (642)
.++--..|++....+. +-.||...+...-....... . ........++++.|+.||-.+++....+
T Consensus 183 in~~hgLla~Gt~~g~--------VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G---- 250 (703)
T KOG2321|consen 183 INEEHGLLACGTEDGV--------VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG---- 250 (703)
T ss_pred ecCccceEEecccCce--------EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC----
Confidence 9988777777775553 77888876544322211111 0 0011122478899999999888877654
Q ss_pred CCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCC--CCCcEEecC
Q 039497 568 EPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYE--NGTPAWHPG 610 (642)
Q Consensus 568 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~--~~~~~~s~d 610 (642)
.++.||+....+-.+-.+++. +..+.|-+.
T Consensus 251 -------------~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 251 -------------SVLIYDLRASKPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred -------------cEEEEEcccCCceeecccCCccceeeeccccc
Confidence 899999999888777777653 345666443
No 259
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.013 Score=57.12 Aligned_cols=190 Identities=13% Similarity=0.053 Sum_probs=111.3
Q ss_pred CCCEEEEEecCCCceeEEEEECC-----CCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCC
Q 039497 340 DGGLIVFNHDFELNAGIKIAKSD-----GSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414 (642)
Q Consensus 340 dg~~l~~~~~~~~~~~l~~~d~~-----~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 414 (642)
||..+..++ .+.|.++..+ ......+........+.-.|.-..|+..... .....+.||++.. .
T Consensus 115 dg~Litc~~----sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGk----e~~n~lkiwdle~--~- 183 (412)
T KOG3881|consen 115 DGTLITCVS----SGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGK----ENINELKIWDLEQ--S- 183 (412)
T ss_pred CCEEEEEec----CCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCch----hcccceeeeeccc--c-
Confidence 455455533 2455665555 3333444444455555555555545443211 1236778888765 1
Q ss_pred CCCCCCCccccceEEccccCCCCccCcEECCC--CCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEe
Q 039497 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPD--GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492 (642)
Q Consensus 415 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD--g~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~s 492 (642)
+-....+.++...-.|.-. .....+.|-|+ ...|+..+ ...++.+||+..+.. ++..+.-....+.+....
T Consensus 184 ~qiw~aKNvpnD~L~LrVP--vW~tdi~Fl~g~~~~~fat~T---~~hqvR~YDt~~qRR--PV~~fd~~E~~is~~~l~ 256 (412)
T KOG3881|consen 184 KQIWSAKNVPNDRLGLRVP--VWITDIRFLEGSPNYKFATIT---RYHQVRLYDTRHQRR--PVAQFDFLENPISSTGLT 256 (412)
T ss_pred eeeeeccCCCCccccceee--eeeccceecCCCCCceEEEEe---cceeEEEecCcccCc--ceeEeccccCcceeeeec
Confidence 0000000001111111111 24455677766 56666555 455899999997764 245555555667788999
Q ss_pred cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL 562 (642)
Q Consensus 493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~ 562 (642)
|+|+.||+....+. |..+|+.++..-.....+..+ .+.++.-.|.++.|+.+.-+
T Consensus 257 p~gn~Iy~gn~~g~--------l~~FD~r~~kl~g~~~kg~tG-------sirsih~hp~~~~las~GLD 311 (412)
T KOG3881|consen 257 PSGNFIYTGNTKGQ--------LAKFDLRGGKLLGCGLKGITG-------SIRSIHCHPTHPVLASCGLD 311 (412)
T ss_pred CCCcEEEEecccch--------hheecccCceeeccccCCccC-------CcceEEEcCCCceEEeeccc
Confidence 99999988887765 999999988776554445555 56778888888888776654
No 260
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=97.38 E-value=0.062 Score=55.76 Aligned_cols=223 Identities=23% Similarity=0.264 Sum_probs=127.5
Q ss_pred cEEcCCCCEEEEEecCCCceeEEEEECCCCC--eeEEee-cC-Cceeeee-ecCCCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSK--RWTLIK-DR-TAFYNSW-SPTEKHVIYTSTGPIFQSERATVQIARVS 409 (642)
Q Consensus 335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~--~~~l~~-~~-~~~~~~~-spdg~~l~~~~~~~~~~~~~~~~~l~~~~ 409 (642)
..+.+.+..++... ....+.+++...+. ...+.. .. .+....+ ++++..++.... ..+..+.+|++.
T Consensus 71 ~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~~~~~~~ 142 (466)
T COG2319 71 IAFSPDGELLLSGS---SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS-----SLDGTVKLWDLS 142 (466)
T ss_pred EEECCCCcEEEEec---CCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccC-----CCCccEEEEEec
Confidence 35666676655543 23566666766664 222222 11 3455555 788873433321 225678888875
Q ss_pred eecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccce
Q 039497 410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489 (642)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~ 489 (642)
. . .. ....+..+. ..+..+.|+|+++.++.... ....+.+|+..++.. +..+..+...+..+
T Consensus 143 ~--~-----~~-----~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~ 204 (466)
T COG2319 143 T--P-----GK-----LIRTLEGHS-ESVTSLAFSPDGKLLASGSS--LDGTIKLWDLRTGKP---LSTLAGHTDPVSSL 204 (466)
T ss_pred C--C-----Ce-----EEEEEecCc-ccEEEEEECCCCCEEEecCC--CCCceEEEEcCCCce---EEeeccCCCceEEE
Confidence 3 1 01 444455554 56678999999996665542 245788888886554 45555556677888
Q ss_pred eEecCCCEEEEE-ecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccC
Q 039497 490 SWSPKGDLIAFS-SNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAE 568 (642)
Q Consensus 490 ~~spdG~~l~~~-~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~ 568 (642)
.|+|+++.++.. +.+. .|.+||...+.........+.. .. ...|++++..++....++
T Consensus 205 ~~~~~~~~~~~~~~~d~--------~i~~wd~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~d~----- 263 (466)
T COG2319 205 AFSPDGGLLIASGSSDG--------TIRLWDLSTGKLLRSTLSGHSD-------SV-VSSFSPDGSLLASGSSDG----- 263 (466)
T ss_pred EEcCCcceEEEEecCCC--------cEEEEECCCCcEEeeecCCCCc-------ce-eEeECCCCCEEEEecCCC-----
Confidence 999999844444 2232 2556777644443311222222 11 227999996666333332
Q ss_pred CCCCCCCCCCCCcEEEEEcCCCc--eeeccCCCCCCCCcEEecCCceEEe
Q 039497 569 PVSWPNQFQPYGDLYVVKLDGSG--LRRLTWNGYENGTPAWHPGNQLDLG 616 (642)
Q Consensus 569 ~~~~~~~~~~~~~l~~~~~~~~~--~~~lt~~~~~~~~~~~s~dg~~~~~ 616 (642)
.+.+|+..... ...+..+...+....|+|++..+++
T Consensus 264 ------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 264 ------------TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred ------------cEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE
Confidence 67777766444 2333233345566789998877766
No 261
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.12 Score=57.84 Aligned_cols=113 Identities=22% Similarity=0.305 Sum_probs=76.3
Q ss_pred cEECCCC-CeEEEEeCCCC-ceeEEEEECCCCccccceeeCCCCCCcccc-eeEecCCCEEEEEecCCCCCCCCceeEEE
Q 039497 441 PSCSPDG-KFLVFRSGRSG-HKNLFVLDAVNGEFNGDIRQLTDGPWIDTM-PSWSPKGDLIAFSSNRHNPDNVEAFSLYV 517 (642)
Q Consensus 441 ~~~SpDg-~~l~~~~~~~g-~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~-~~~spdG~~l~~~~~~~~~~~~~~~~l~~ 517 (642)
+.++.|+ .++++.....+ ..++..+....+.. ...++.+.+.+.. +.++.+.++++|.+.... .+..+||.
T Consensus 345 ~~~~~d~~~~~~~~~~~~~~~~hi~~~~~~~~~~---~~~lt~g~w~v~~i~~~~~~~~~i~f~~~~~~---~~~~~ly~ 418 (755)
T KOG2100|consen 345 PVFSSDGSSYLKVDSVSDGGYNHIAYLKLSNGSE---PRMLTSGNWEVTSILGYDKDSNRIYFDAYEED---PSERHLYS 418 (755)
T ss_pred ceEeecCCceeEEEeeccCCEEEEEEEEcCCCCc---cccccccceEEEEeccccCCCceEEEEecCCC---CCceEEEE
Confidence 5678887 44555554445 56777777766633 4778877776643 367789999999988763 37899999
Q ss_pred EeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497 518 IKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA 564 (642)
Q Consensus 518 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~ 564 (642)
+++.......++...... ++...++.+++..+++++......
T Consensus 419 i~~~~~~~~~lt~~~~~~-----~~~~~~~~~~~~~~~~v~~~~gP~ 460 (755)
T KOG2100|consen 419 ISLGSGTVESLTCSLITG-----PCTYLSVSFSKSAKYYVLSCSGPK 460 (755)
T ss_pred EEccccccccccccCCCC-----cceEEEEecCCcccEEEEEccCCC
Confidence 999887776666533222 124457788888888777765543
No 262
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=97.36 E-value=0.0055 Score=58.18 Aligned_cols=94 Identities=10% Similarity=0.034 Sum_probs=63.9
Q ss_pred CceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE
Q 039497 352 LNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI 429 (642)
Q Consensus 352 ~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 429 (642)
..+.|+++|+..++...-.. .+.+..+.+.|+.-.|+... ..+..+++|.+.. + ....
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~------SkD~svRlwnI~~--~------------~Cv~ 172 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSA------SKDHSVRLWNIQT--D------------VCVA 172 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEe------cCCceEEEEeccC--C------------eEEE
Confidence 45789999998876544333 67788999999987777766 3488999999977 2 2222
Q ss_pred cccc---CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC
Q 039497 430 LTKE---ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV 468 (642)
Q Consensus 430 l~~~---~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~ 468 (642)
+..+ ....+.++.|++||.+|+-... +-.|.+|++.
T Consensus 173 VfGG~egHrdeVLSvD~~~~gd~i~ScGm---Dhslk~W~l~ 211 (385)
T KOG1034|consen 173 VFGGVEGHRDEVLSVDFSLDGDRIASCGM---DHSLKLWRLN 211 (385)
T ss_pred EecccccccCcEEEEEEcCCCCeeeccCC---cceEEEEecC
Confidence 2221 1145667899999998875443 2356666655
No 263
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=97.34 E-value=0.016 Score=59.91 Aligned_cols=235 Identities=12% Similarity=0.094 Sum_probs=129.1
Q ss_pred cCCCCEEEEEecCCCceeEEEEECCCCCee----EE----eecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497 338 SPDGGLIVFNHDFELNAGIKIAKSDGSKRW----TL----IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVS 409 (642)
Q Consensus 338 spdg~~l~~~~~~~~~~~l~~~d~~~~~~~----~l----~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~ 409 (642)
.|.-+.|+++..++ +.|-++|...-..+ ++ .+...+.++.|.| |+..++.. .++..+++|++.
T Consensus 60 ~~n~eHiLavadE~--G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsa------sGDsT~r~Wdvk 130 (720)
T KOG0321|consen 60 APNKEHILAVADED--GGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSA------SGDSTIRPWDVK 130 (720)
T ss_pred CCCccceEEEecCC--CceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEc------cCCceeeeeeec
Confidence 34556677766543 34555555433222 22 2256688999999 77666665 358999999997
Q ss_pred eecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCc--c---------------
Q 039497 410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE--F--------------- 472 (642)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~--~--------------- 472 (642)
. ++.. -...+..+. +.+....|+|+..-++.+..++| +|.+||..-.. .
T Consensus 131 ~--------s~l~---G~~~~~GH~-~SvkS~cf~~~n~~vF~tGgRDg--~illWD~R~n~~d~~e~~~~~~~~~~n~~ 196 (720)
T KOG0321|consen 131 T--------SRLV---GGRLNLGHT-GSVKSECFMPTNPAVFCTGGRDG--EILLWDCRCNGVDALEEFDNRIYGRHNTA 196 (720)
T ss_pred c--------ceee---cceeecccc-cccchhhhccCCCcceeeccCCC--cEEEEEEeccchhhHHHHhhhhhccccCC
Confidence 6 2211 112234444 77888999999998888888877 45555543111 0
Q ss_pred ccceeeCCCC-------CCcccc---eeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce----EEeeecCCCCCCC
Q 039497 473 NGDIRQLTDG-------PWIDTM---PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL----RRIHVAGPEGSGD 538 (642)
Q Consensus 473 ~~~~~~l~~~-------~~~~~~---~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~----~~l~~~~~~~~~~ 538 (642)
+++.+++... ...+.. ..+..|...|+-++..+ ..|.+||+..... ..+....... .
T Consensus 197 ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D-------~~iKVWDLRk~~~~~r~ep~~~~~~~t--~ 267 (720)
T KOG0321|consen 197 PTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAAD-------STIKVWDLRKNYTAYRQEPRGSDKYPT--H 267 (720)
T ss_pred CCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCC-------cceEEEeecccccccccCCCcccCccC--c
Confidence 0011122110 111122 35666888787777622 2389999964321 1110000000 0
Q ss_pred ccc-ccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCC-----CCCCcEEecCCc
Q 039497 539 VDR-ERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGY-----ENGTPAWHPGNQ 612 (642)
Q Consensus 539 ~~~-~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~-----~~~~~~~s~dg~ 612 (642)
..+ ..+..+.....|.+|+....++ .||.|++.+-....+.-..+ ....-..|||++
T Consensus 268 skrs~G~~nL~lDssGt~L~AsCtD~-----------------sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~ 330 (720)
T KOG0321|consen 268 SKRSVGQVNLILDSSGTYLFASCTDN-----------------SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC 330 (720)
T ss_pred ccceeeeEEEEecCCCCeEEEEecCC-----------------cEEEEeccccCcCchhhccCcccceeeeeeecCCCCc
Confidence 000 0123445556679998888754 89999987754333322111 112335688999
Q ss_pred eEEeecCCC
Q 039497 613 LDLGKLRLE 621 (642)
Q Consensus 613 ~~~~~~~~~ 621 (642)
++++.-..+
T Consensus 331 ~l~SgSsd~ 339 (720)
T KOG0321|consen 331 SLLSGSSDE 339 (720)
T ss_pred eEeccCCCc
Confidence 888765444
No 264
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.33 E-value=0.02 Score=54.37 Aligned_cols=200 Identities=13% Similarity=0.163 Sum_probs=103.5
Q ss_pred CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEE
Q 039497 373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452 (642)
Q Consensus 373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~ 452 (642)
..++.++|.||.+.|+.+.+ ....|+.++. + |. ..+.+.-...+....+++.-+|+++ .
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d--------~~~~i~els~--~------G~----vlr~i~l~g~~D~EgI~y~g~~~~v-l 80 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQD--------EPGEIYELSL--D------GK----VLRRIPLDGFGDYEGITYLGNGRYV-L 80 (248)
T ss_dssp S-EEEEEEETTTTEEEEEET--------TTTEEEEEET--T------------EEEEEE-SS-SSEEEEEE-STTEEE-E
T ss_pred CCccccEEcCCCCeEEEEEC--------CCCEEEEEcC--C------CC----EEEEEeCCCCCCceeEEEECCCEEE-E
Confidence 45889999999999998884 3445677776 3 31 4455543332556678888777554 4
Q ss_pred EeCCCCceeEEEEECCC--Cccc-cceeeC--CC---CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeC--CC
Q 039497 453 RSGRSGHKNLFVLDAVN--GEFN-GDIRQL--TD---GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP--DG 522 (642)
Q Consensus 453 ~~~~~g~~~l~~~d~~~--g~~~-~~~~~l--~~---~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~--~~ 522 (642)
...+.+ .|+++++.. .... ...+.+ .. .......++|+|.++.|++...+ .+..||.++. ..
T Consensus 81 ~~Er~~--~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~------~P~~l~~~~~~~~~ 152 (248)
T PF06977_consen 81 SEERDQ--RLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER------KPKRLYEVNGFPGG 152 (248)
T ss_dssp EETTTT--EEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES------SSEEEEEEESTT-S
T ss_pred EEcCCC--cEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC------CChhhEEEccccCc
Confidence 555544 677777632 2210 001112 11 22235678999998888877544 3456888876 22
Q ss_pred CceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee--eccCCC-
Q 039497 523 SGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR--RLTWNG- 599 (642)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~lt~~~- 599 (642)
............. ....-..+..+.+.|....|++.+.... .|..+|.+|.-+. .|....
T Consensus 153 ~~~~~~~~~~~~~-~~~~~~d~S~l~~~p~t~~lliLS~es~----------------~l~~~d~~G~~~~~~~L~~g~~ 215 (248)
T PF06977_consen 153 FDLFVSDDQDLDD-DKLFVRDLSGLSYDPRTGHLLILSDESR----------------LLLELDRQGRVVSSLSLDRGFH 215 (248)
T ss_dssp S--EEEE-HHHH--HT--SS---EEEEETTTTEEEEEETTTT----------------EEEEE-TT--EEEEEE-STTGG
T ss_pred cceeecccccccc-ccceeccccceEEcCCCCeEEEEECCCC----------------eEEEECCCCCEEEEEEeCCccc
Confidence 2222111111000 0000013467889998888988887643 7888887775433 333310
Q ss_pred ------CCCCCcEEecCCceEEeec
Q 039497 600 ------YENGTPAWHPGNQLDLGKL 618 (642)
Q Consensus 600 ------~~~~~~~~s~dg~~~~~~~ 618 (642)
...-.++|.++|.+++.+.
T Consensus 216 gl~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 216 GLSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp G-SS---SEEEEEE-TT--EEEEET
T ss_pred CcccccCCccEEEECCCCCEEEEcC
Confidence 1124679999998887663
No 265
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.31 E-value=0.0011 Score=63.09 Aligned_cols=199 Identities=13% Similarity=0.044 Sum_probs=122.1
Q ss_pred CceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCccccccccCCCEEEEEEeccCCC
Q 039497 34 FHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPD 113 (642)
Q Consensus 34 ~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 113 (642)
.-.+.|++|.+.+...++- ++|..++..+....+|.++.+-....-.+..+.+ -...+..+.++-.+....
T Consensus 228 ~c~~~L~GHtGSVLCLqyd----~rviisGSSDsTvrvWDv~tge~l~tlihHceaV---Lhlrf~ng~mvtcSkDrs-- 298 (499)
T KOG0281|consen 228 ECLKILTGHTGSVLCLQYD----ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAV---LHLRFSNGYMVTCSKDRS-- 298 (499)
T ss_pred HHHHhhhcCCCcEEeeecc----ceEEEecCCCceEEEEeccCCchhhHHhhhccee---EEEEEeCCEEEEecCCce--
Confidence 3457899999999999886 4566676667788899985443110011111111 023346666655443322
Q ss_pred cccccccceEEEEccCCce--EecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeec
Q 039497 114 QIFKSWSALYSTDLKASKF--TRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCE 191 (642)
Q Consensus 114 ~~~~~~~~l~~~~~~~~~~--~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~ 191 (642)
..+|.+...+..+ +.|..+.+......| |.|+|+.++.+. .|-+|+..+++..+....
T Consensus 299 ------iaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDR------------TikvW~~st~efvRtl~g 358 (499)
T KOG0281|consen 299 ------IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDR------------TIKVWSTSTCEFVRTLNG 358 (499)
T ss_pred ------eEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCc------------eEEEEeccceeeehhhhc
Confidence 1577665444221 234445555544555 577999887665 789999999997777664
Q ss_pred CC-CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceee
Q 039497 192 RG-GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRH 270 (642)
Q Consensus 192 ~~-~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~ 270 (642)
+. +.+..--.|+++++. ..+.+. ..++...|. ....+.++..-+..+.| |.++|+. |.....
T Consensus 359 HkRGIAClQYr~rlvVSG-SSDntI--Rlwdi~~G~-------cLRvLeGHEeLvRciRF--d~krIVS-----GaYDGk 421 (499)
T KOG0281|consen 359 HKRGIACLQYRDRLVVSG-SSDNTI--RLWDIECGA-------CLRVLEGHEELVRCIRF--DNKRIVS-----GAYDGK 421 (499)
T ss_pred ccccceehhccCeEEEec-CCCceE--EEEeccccH-------HHHHHhchHHhhhheee--cCceeee-----ccccce
Confidence 43 444444466777776 556644 445666663 44555666544556666 7788887 555669
Q ss_pred EEEEEeec
Q 039497 271 IEIYDLTL 278 (642)
Q Consensus 271 i~~~d~~~ 278 (642)
|.+||+..
T Consensus 422 ikvWdl~a 429 (499)
T KOG0281|consen 422 IKVWDLQA 429 (499)
T ss_pred EEEEeccc
Confidence 99999944
No 266
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=97.28 E-value=0.04 Score=57.17 Aligned_cols=248 Identities=11% Similarity=0.061 Sum_probs=123.6
Q ss_pred CCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCce-eEE-eeeCCCccEEcCCCCEEEEEecCCCceeE
Q 039497 279 NPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKE-LRM-LRLNGSFPSFSPDGGLIVFNHDFELNAGI 356 (642)
Q Consensus 279 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~l 356 (642)
.+...+.+..|-| |+.++.. ..|+.. ...|.+....-... +-+ ........+|+|+..-++..+.+++..-|
T Consensus 98 aH~nAifDl~wap-ge~~lVs-asGDsT----~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ill 171 (720)
T KOG0321|consen 98 AHKNAIFDLKWAP-GESLLVS-ASGDST----IRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILL 171 (720)
T ss_pred cccceeEeeccCC-CceeEEE-ccCCce----eeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEE
Confidence 3445566778999 5544433 334421 33343322111100 000 01112346788888766666666666666
Q ss_pred EEEECCCCC-------------------eeEEee--------cCCcee---eeeecCCCEEEEEEcCCCcccCCCeEEEE
Q 039497 357 KIAKSDGSK-------------------RWTLIK--------DRTAFY---NSWSPTEKHVIYTSTGPIFQSERATVQIA 406 (642)
Q Consensus 357 ~~~d~~~~~-------------------~~~l~~--------~~~~~~---~~~spdg~~l~~~~~~~~~~~~~~~~~l~ 406 (642)
|.+...+.. ..++.. ...+.. +.+..|...|+.++ ..++.+++|
T Consensus 172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSag------a~D~~iKVW 245 (720)
T KOG0321|consen 172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAG------AADSTIKVW 245 (720)
T ss_pred EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeecc------CCCcceEEE
Confidence 666544411 011111 223444 56677888888776 348999999
Q ss_pred EEEeecCCCCCCCCCccccceEEccccCCCCc--cCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC
Q 039497 407 RVSFQLDPSDDNNREEIPCDVKILTKEETGNN--AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW 484 (642)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~ 484 (642)
++..+.. +...+ +.....+..+..... ..+....-|.+|+..-. +..||.|++.+-.. .+..+..+..
T Consensus 246 DLRk~~~----~~r~e-p~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt---D~sIy~ynm~s~s~--sP~~~~sg~~ 315 (720)
T KOG0321|consen 246 DLRKNYT----AYRQE-PRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT---DNSIYFYNMRSLSI--SPVAEFSGKL 315 (720)
T ss_pred eeccccc----ccccC-CCcccCccCcccceeeeEEEEecCCCCeEEEEec---CCcEEEEeccccCc--CchhhccCcc
Confidence 9965111 01110 001111111110122 22333344577755443 34899999875331 0122222221
Q ss_pred ccc---ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCE-EEEEE
Q 039497 485 IDT---MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW-LLFTA 560 (642)
Q Consensus 485 ~~~---~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~-l~~~~ 560 (642)
... .-..||||.+|+-.+.+.. .|+|.++.-+.-.....++.. .+..+.|.|.-.. ++..+
T Consensus 316 ~~sf~vks~lSpd~~~l~SgSsd~~--------ayiw~vs~~e~~~~~l~Ght~-------eVt~V~w~pS~~t~v~TcS 380 (720)
T KOG0321|consen 316 NSSFYVKSELSPDDCSLLSGSSDEQ--------AYIWVVSSPEAPPALLLGHTR-------EVTTVRWLPSATTPVATCS 380 (720)
T ss_pred cceeeeeeecCCCCceEeccCCCcc--------eeeeeecCccCChhhhhCcce-------EEEEEeeccccCCCceeec
Confidence 111 1256999999988877664 788888766554444434443 5667777554322 44444
Q ss_pred ecC
Q 039497 561 NLG 563 (642)
Q Consensus 561 ~~~ 563 (642)
.+.
T Consensus 381 dD~ 383 (720)
T KOG0321|consen 381 DDF 383 (720)
T ss_pred cCc
Confidence 443
No 267
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=97.27 E-value=0.055 Score=50.75 Aligned_cols=222 Identities=12% Similarity=0.054 Sum_probs=126.0
Q ss_pred CccEEcCCCC-----EEEEEecCCCceeEEEEECCCCCeeEEe---e------cCCceeeeeecCCCEEEEEEcCCCccc
Q 039497 333 SFPSFSPDGG-----LIVFNHDFELNAGIKIAKSDGSKRWTLI---K------DRTAFYNSWSPTEKHVIYTSTGPIFQS 398 (642)
Q Consensus 333 ~~~~~spdg~-----~l~~~~~~~~~~~l~~~d~~~~~~~~l~---~------~~~~~~~~~spdg~~l~~~~~~~~~~~ 398 (642)
....|.||.+ .|+.. +..-+||.+..+.++..... . ...+.++.|..-.-.++.++.
T Consensus 100 tK~~wiPd~~g~~pdlLATs---~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS------ 170 (364)
T KOG0290|consen 100 TKLMWIPDSKGVYPDLLATS---SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS------ 170 (364)
T ss_pred cceEecCCccccCcchhhcc---cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec------
Confidence 4557877764 23322 22345666665444322111 1 234567778764444444432
Q ss_pred CCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee
Q 039497 399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ 478 (642)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~ 478 (642)
-+.+..||++.... .+. ...+|..+. ..+..++|+.+|..++..-..+| .+.++|+..-+. .+.
T Consensus 171 iDTTCTiWdie~~~------~~~----vkTQLIAHD-KEV~DIaf~~~s~~~FASvgaDG--SvRmFDLR~leH---STI 234 (364)
T KOG0290|consen 171 IDTTCTIWDIETGV------SGT----VKTQLIAHD-KEVYDIAFLKGSRDVFASVGADG--SVRMFDLRSLEH---STI 234 (364)
T ss_pred ccCeEEEEEEeecc------ccc----eeeEEEecC-cceeEEEeccCccceEEEecCCC--cEEEEEeccccc---ceE
Confidence 37788999998710 011 345565555 78899999998877755555444 677788876654 344
Q ss_pred CCCCCC---cccceeEecC-CCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCC
Q 039497 479 LTDGPW---IDTMPSWSPK-GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554 (642)
Q Consensus 479 l~~~~~---~~~~~~~spd-G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~ 554 (642)
+...+. ..-.++|++. =++++....+. ..|.+.|+.-.........++.+ .+..++|.|-..
T Consensus 235 IYE~p~~~~pLlRLswnkqDpnymATf~~dS-------~~V~iLDiR~P~tpva~L~~H~a-------~VNgIaWaPhS~ 300 (364)
T KOG0290|consen 235 IYEDPSPSTPLLRLSWNKQDPNYMATFAMDS-------NKVVILDIRVPCTPVARLRNHQA-------SVNGIAWAPHSS 300 (364)
T ss_pred EecCCCCCCcceeeccCcCCchHHhhhhcCC-------ceEEEEEecCCCcceehhhcCcc-------cccceEecCCCC
Confidence 433332 2234466653 35555544433 34888888765444333345555 678899999887
Q ss_pred EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc------eeeccCCCCCCCCcEEec
Q 039497 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG------LRRLTWNGYENGTPAWHP 609 (642)
Q Consensus 555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~lt~~~~~~~~~~~s~ 609 (642)
.-+.++.+.- +.-.||+..-. +......+..+..+.|++
T Consensus 301 ~hictaGDD~----------------qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~ 345 (364)
T KOG0290|consen 301 SHICTAGDDC----------------QALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSS 345 (364)
T ss_pred ceeeecCCcc----------------eEEEEecccccccCCCCchhhhhccceeeeeeecc
Confidence 7666665543 45556665321 111122345667888884
No 268
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.26 E-value=0.00053 Score=71.37 Aligned_cols=189 Identities=14% Similarity=0.134 Sum_probs=116.6
Q ss_pred cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEE
Q 039497 372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451 (642)
Q Consensus 372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~ 451 (642)
...+.++.|+++...|+... ..+.+++|++.. +. ..+.|+.+. .....+.|+|-|.+.+
T Consensus 70 espIeSl~f~~~E~Llaags-------asgtiK~wDlee--------Ak-----~vrtLtgh~-~~~~sv~f~P~~~~~a 128 (825)
T KOG0267|consen 70 ESPIESLTFDTSERLLAAGS-------ASGTIKVWDLEE--------AK-----IVRTLTGHL-LNITSVDFHPYGEFFA 128 (825)
T ss_pred CCcceeeecCcchhhhcccc-------cCCceeeeehhh--------hh-----hhhhhhccc-cCcceeeeccceEEec
Confidence 56788999999888777665 377999999976 23 566777766 5566788999988764
Q ss_pred EEeCCCCceeEEEEECC-CCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497 452 FRSGRSGHKNLFVLDAV-NGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530 (642)
Q Consensus 452 ~~~~~~g~~~l~~~d~~-~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 530 (642)
-.+ ...++-+||.. .|- ......+.+.+....|+|||++++-...+. .+.+||+..|+.-.-..
T Consensus 129 ~gS---tdtd~~iwD~Rk~Gc----~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~--------tvki~d~~agk~~~ef~ 193 (825)
T KOG0267|consen 129 SGS---TDTDLKIWDIRKKGC----SHTYKSHTRVVDVLRLSPDGRWVASGGEDN--------TVKIWDLTAGKLSKEFK 193 (825)
T ss_pred ccc---ccccceehhhhccCc----eeeecCCcceeEEEeecCCCceeeccCCcc--------eeeeecccccccccccc
Confidence 333 23467778876 333 244444556677789999999988776644 38889986655432111
Q ss_pred cCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEec
Q 039497 531 AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHP 609 (642)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~ 609 (642)
.+.+ .+..+-|.|-.-.+.-.+.+. -+-+|++.+=+ +-..-.....+....|.|
T Consensus 194 -~~e~-------~v~sle~hp~e~Lla~Gs~d~-----------------tv~f~dletfe~I~s~~~~~~~v~~~~fn~ 248 (825)
T KOG0267|consen 194 -SHEG-------KVQSLEFHPLEVLLAPGSSDR-----------------TVRFWDLETFEVISSGKPETDGVRSLAFNP 248 (825)
T ss_pred -cccc-------cccccccCchhhhhccCCCCc-----------------eeeeeccceeEEeeccCCccCCceeeeecC
Confidence 2223 334444554433333223222 45555655322 111111234567889999
Q ss_pred CCceEEeecCCC
Q 039497 610 GNQLDLGKLRLE 621 (642)
Q Consensus 610 dg~~~~~~~~~~ 621 (642)
|++.+++..+..
T Consensus 249 ~~~~~~~G~q~s 260 (825)
T KOG0267|consen 249 DGKIVLSGEQIS 260 (825)
T ss_pred CceeeecCchhh
Confidence 999887765433
No 269
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.26 E-value=0.016 Score=54.87 Aligned_cols=152 Identities=13% Similarity=0.163 Sum_probs=95.7
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCe--eEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEE
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR--WTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV 408 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~--~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~ 408 (642)
...+++ ++|+.+-. +.|+++.....-. ..+.. ..+...+.-.-+...|+|-+. ..+.++|.++
T Consensus 99 ~V~l~r--~riVvvl~----~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~------k~GqvQi~dL 166 (346)
T KOG2111|consen 99 AVKLRR--DRIVVVLE----NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF------KTGQVQIVDL 166 (346)
T ss_pred eEEEcC--CeEEEEec----CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC------ccceEEEEEh
Confidence 344554 55766543 6788888764321 22211 223333333334455666553 3578888887
Q ss_pred EeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC--Ccc
Q 039497 409 SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP--WID 486 (642)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~--~~~ 486 (642)
.. . .. +.+..+..+. ..+..++++-+|..|+.++.+. .=|.++|..+|+. +..+-.+. ..+
T Consensus 167 ~~--~------~~---~~p~~I~AH~-s~Iacv~Ln~~Gt~vATaStkG--TLIRIFdt~~g~~---l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 167 AS--T------KP---NAPSIINAHD-SDIACVALNLQGTLVATASTKG--TLIRIFDTEDGTL---LQELRRGVDRADI 229 (346)
T ss_pred hh--c------Cc---CCceEEEccc-CceeEEEEcCCccEEEEeccCc--EEEEEEEcCCCcE---eeeeecCCchheE
Confidence 65 2 10 0234555555 6788899999999998887543 3577899999986 56665432 356
Q ss_pred cceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497 487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG 522 (642)
Q Consensus 487 ~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~ 522 (642)
..++||||+.+|+.+++.++ |.++.+..
T Consensus 230 y~iaFSp~~s~LavsSdKgT--------lHiF~l~~ 257 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSDKGT--------LHIFSLRD 257 (346)
T ss_pred EEEEeCCCccEEEEEcCCCe--------EEEEEeec
Confidence 77899999999999998865 66665543
No 270
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.25 E-value=0.11 Score=48.88 Aligned_cols=203 Identities=14% Similarity=0.127 Sum_probs=114.4
Q ss_pred CceeCCCCcE-EEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee-cCC----CcceEeeCCeEEEEE-ecCC---C
Q 039497 144 SPSVSYSGKF-IAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC-ERG----GWPTWSGDSTIYFHR-QADD---G 213 (642)
Q Consensus 144 ~~~~SPDG~~-la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~----~~~~wspdg~~~~~~-~~~~---g 213 (642)
..+++|--++ +||++.- +.-.+++|..+++..++.. ..+ +.-.|||||+++|.. ++.+ |
T Consensus 72 gi~~~p~~~ravafARrP-----------Gtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rG 140 (366)
T COG3490 72 GIAFHPALPRAVAFARRP-----------GTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRG 140 (366)
T ss_pred CeecCCCCcceEEEEecC-----------CceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCc
Confidence 3677776544 6777643 3356788888887655544 333 345999999877764 4443 3
Q ss_pred ceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEe------cc-------CCceeeEEEEEe----
Q 039497 214 WWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATR------RK-------NRNFRHIEIYDL---- 276 (642)
Q Consensus 214 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~------~~-------~~~~~~i~~~d~---- 276 (642)
...||... .+.+ ..-.+..++..-..+.+.+||+.|+.+.. .- ......+.+.|-
T Consensus 141 ViGvYd~r--~~fq------rvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~ 212 (366)
T COG3490 141 VIGVYDAR--EGFQ------RVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGN 212 (366)
T ss_pred eEEEEecc--cccc------eecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccc
Confidence 34555544 3321 44455556666677889999999998642 11 112233444442
Q ss_pred -ec-------CCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCC----------CccEEc
Q 039497 277 -TL-------NPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNG----------SFPSFS 338 (642)
Q Consensus 277 -~~-------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~s 338 (642)
.. ....++.....-+||+.++=+..++... ... -++....+.+.++...... ..++.+
T Consensus 213 liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~--d~p--pLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n 288 (366)
T COG3490 213 LIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRN--DLP--PLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAAN 288 (366)
T ss_pred hhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCc--cCC--cceeeccCCCcCcccCCCHHHHHHHHhhhhheeec
Confidence 01 1233455667888998877777776642 111 1222222222232222111 234555
Q ss_pred CCCCEEEEEecCCCceeEEEEECCCCCeeEEee
Q 039497 339 PDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK 371 (642)
Q Consensus 339 pdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~ 371 (642)
.+...++..+.+ .+...++|.+++..+....
T Consensus 289 ~~~glV~lTSP~--GN~~vi~da~tG~vv~~a~ 319 (366)
T COG3490 289 RRDGLVALTSPR--GNRAVIWDAATGAVVSEAA 319 (366)
T ss_pred ccCCeEEEecCC--CCeEEEEEcCCCcEEeccc
Confidence 555666666643 3567778999998665543
No 271
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.22 E-value=0.0019 Score=64.05 Aligned_cols=221 Identities=13% Similarity=0.125 Sum_probs=137.5
Q ss_pred eeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR 407 (642)
Q Consensus 329 ~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~ 407 (642)
.+....+.++.+|+.+++.. .+++|-.+|-.++....-.. ...+.++.|-.+..+++++. ...++||+
T Consensus 129 eFGPY~~~ytrnGrhlllgG---rKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQ--------K~y~yvYD 197 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGG---RKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQ--------KKYVYVYD 197 (545)
T ss_pred ccCCeeeeecCCccEEEecC---CccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhh--------hceEEEec
Confidence 45556778999999999954 35788888877776544433 67788999999888887765 33444444
Q ss_pred EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccc
Q 039497 408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT 487 (642)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~ 487 (642)
- .|. +...|... ..+..+.|-|-- +|+.+.+..| .|.-.|+.+|+. +..+....+...
T Consensus 198 ~----------~Gt----ElHClk~~--~~v~rLeFLPyH-fLL~~~~~~G--~L~Y~DVS~Gkl---Va~~~t~~G~~~ 255 (545)
T KOG1272|consen 198 N----------NGT----ELHCLKRH--IRVARLEFLPYH-FLLVAASEAG--FLKYQDVSTGKL---VASIRTGAGRTD 255 (545)
T ss_pred C----------CCc----EEeehhhc--Cchhhhcccchh-heeeecccCC--ceEEEeechhhh---hHHHHccCCccc
Confidence 2 232 33444333 356667788763 5666665544 788889999997 566655555544
Q ss_pred ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE-EeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcc
Q 039497 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR-RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVM 566 (642)
Q Consensus 488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~ 566 (642)
...-.|-.-.|-....++. +-+|.....+.- .+. .+.+ .+.++++.++|++++.+..+.
T Consensus 256 vm~qNP~NaVih~GhsnGt--------VSlWSP~skePLvKiL--cH~g-------~V~siAv~~~G~YMaTtG~Dr--- 315 (545)
T KOG1272|consen 256 VMKQNPYNAVIHLGHSNGT--------VSLWSPNSKEPLVKIL--CHRG-------PVSSIAVDRGGRYMATTGLDR--- 315 (545)
T ss_pred hhhcCCccceEEEcCCCce--------EEecCCCCcchHHHHH--hcCC-------CcceEEECCCCcEEeeccccc---
Confidence 4555554443333333332 677777655432 111 2233 678999999999998887654
Q ss_pred cCCCCCCCCCCCCCcEEEEEcCCC-ceeeccCCCCCCCCcEEecCCceEEee
Q 039497 567 AEPVSWPNQFQPYGDLYVVKLDGS-GLRRLTWNGYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 567 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lt~~~~~~~~~~~s~dg~~~~~~ 617 (642)
.+-+||+..- ++..+.. ......+++|.-|.+-++-
T Consensus 316 --------------~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~ 352 (545)
T KOG1272|consen 316 --------------KVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSY 352 (545)
T ss_pred --------------ceeEeeeccccccceeec-CCCccccccccccceeeec
Confidence 5566676542 2222222 2334567888877766553
No 272
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.20 E-value=0.36 Score=49.93 Aligned_cols=93 Identities=14% Similarity=0.073 Sum_probs=51.7
Q ss_pred CCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC-CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc
Q 039497 446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG 524 (642)
Q Consensus 446 Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~-~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~ 524 (642)
++..|++.+ ....|+.+|..+|+. +-..... ......|.. .|..|++.+.++. |+.+|.++++
T Consensus 278 ~~~~vyv~~---~~G~l~~~d~~tG~~---~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~--------l~~~d~~tG~ 341 (377)
T TIGR03300 278 DDNRLYVTD---ADGVVVALDRRSGSE---LWKNDELKYRQLTAPAV--VGGYLVVGDFEGY--------LHWLSREDGS 341 (377)
T ss_pred eCCEEEEEC---CCCeEEEEECCCCcE---EEccccccCCccccCEE--ECCEEEEEeCCCE--------EEEEECCCCC
Confidence 456776665 334899999999985 2222221 122334444 3667777765543 9999998776
Q ss_pred eEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 525 LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 525 ~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
..--....... ....+.+. ++ .|++.+.++
T Consensus 342 ~~~~~~~~~~~-------~~~sp~~~-~~-~l~v~~~dG 371 (377)
T TIGR03300 342 FVARLKTDGSG-------IASPPVVV-GD-GLLVQTRDG 371 (377)
T ss_pred EEEEEEcCCCc-------cccCCEEE-CC-EEEEEeCCc
Confidence 64322211111 12345443 33 477776654
No 273
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.19 E-value=0.081 Score=50.19 Aligned_cols=205 Identities=14% Similarity=0.153 Sum_probs=111.0
Q ss_pred CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEE
Q 039497 373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452 (642)
Q Consensus 373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~ 452 (642)
..++++.|+|+.+.|+.+. +....|..++. . |. -.+.++-........+.+.-+|++++
T Consensus 86 ~nvS~LTynp~~rtLFav~--------n~p~~iVElt~--~------Gd----lirtiPL~g~~DpE~Ieyig~n~fvi- 144 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVT--------NKPAAIVELTK--E------GD----LIRTIPLTGFSDPETIEYIGGNQFVI- 144 (316)
T ss_pred ccccceeeCCCcceEEEec--------CCCceEEEEec--C------Cc----eEEEecccccCChhHeEEecCCEEEE-
Confidence 4488999999999998887 45667788877 3 32 44554433223455678887776654
Q ss_pred EeCCCCceeEEEEECCCCccc--cceeeCCCC---CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEE
Q 039497 453 RSGRSGHKNLFVLDAVNGEFN--GDIRQLTDG---PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR 527 (642)
Q Consensus 453 ~~~~~g~~~l~~~d~~~g~~~--~~~~~l~~~---~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 527 (642)
...|...-.++.++.++.... .....|... .......+|+|..+.|++...++ +..||.++..-.....
T Consensus 145 ~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~------P~~I~~~~~~~~~l~~ 218 (316)
T COG3204 145 VDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN------PIGIFEVTQSPSSLSV 218 (316)
T ss_pred EehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC------CcEEEEEecCCccccc
Confidence 445544333444444432210 001112111 22335679999999998887763 5678888744322211
Q ss_pred eeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeec--cCCC--C---
Q 039497 528 IHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL--TWNG--Y--- 600 (642)
Q Consensus 528 l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l--t~~~--~--- 600 (642)
-...........=-..+..+.|.+....|++.+.+.. .|-.+++.|.-...+ +... .
T Consensus 219 ~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr----------------~l~Evd~~G~~~~~lsL~~g~~gL~~d 282 (316)
T COG3204 219 HASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESR----------------RLLEVDLSGEVIELLSLTKGNHGLSSD 282 (316)
T ss_pred ccccCcccccceEeeccccceecCCCCcEEEEecCCc----------------eEEEEecCCCeeeeEEeccCCCCCccc
Confidence 0000110000000002345777776777777776643 577777777643333 2211 0
Q ss_pred --CCCCcEEecCCceE-EeecCC
Q 039497 601 --ENGTPAWHPGNQLD-LGKLRL 620 (642)
Q Consensus 601 --~~~~~~~s~dg~~~-~~~~~~ 620 (642)
....++..++|.++ ++.-|+
T Consensus 283 ipqaEGiamDd~g~lYIvSEPnl 305 (316)
T COG3204 283 IPQAEGIAMDDDGNLYIVSEPNL 305 (316)
T ss_pred CCCcceeEECCCCCEEEEecCCc
Confidence 12457788888655 444443
No 274
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.18 E-value=0.11 Score=49.57 Aligned_cols=199 Identities=15% Similarity=0.151 Sum_probs=102.5
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
.+.|.||.+.|+.+.+ ....|+.+++++...+.+.. .+....+++.-++. ++++.. ....+.++.++.
T Consensus 26 GLTy~pd~~tLfaV~d--~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~-~vl~~E------r~~~L~~~~~~~- 95 (248)
T PF06977_consen 26 GLTYNPDTGTLFAVQD--EPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGR-YVLSEE------RDQRLYIFTIDD- 95 (248)
T ss_dssp EEEEETTTTEEEEEET--TTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTE-EEEEET------TTTEEEEEEE---
T ss_pred ccEEcCCCCeEEEEEC--CCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCE-EEEEEc------CCCcEEEEEEec-
Confidence 5689999888888774 46789999988665555544 45677888886664 445552 256666666644
Q ss_pred cCCCCCCCCCccc-cceEEcc--cc--CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee-----CC-
Q 039497 412 LDPSDDNNREEIP-CDVKILT--KE--ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ-----LT- 480 (642)
Q Consensus 412 ~~~~~~~~~~~~~-~~~~~l~--~~--~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~-----l~- 480 (642)
+ +..+. ...+.+. .. .......++|.|.++.|+.+..+ ....||.++...+... +.. +.
T Consensus 96 -~------~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~-~P~~l~~~~~~~~~~~--~~~~~~~~~~~ 165 (248)
T PF06977_consen 96 -D------TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER-KPKRLYEVNGFPGGFD--LFVSDDQDLDD 165 (248)
T ss_dssp ---------TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES-SSEEEEEEESTT-SS----EEEE-HHHH-
T ss_pred -c------ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC-CChhhEEEccccCccc--eeecccccccc
Confidence 2 11110 0112222 11 11235678999998888877654 3457888876211110 011 11
Q ss_pred --CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-CCCCCCcccccccceEEcCCCCEEE
Q 039497 481 --DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEGSGDVDRERINHVCFSADGEWLL 557 (642)
Q Consensus 481 --~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~S~Dg~~l~ 557 (642)
..-.....++++|....|+..+.... .|..+|.++.-...+.... ..+. ...-.++.-++|.+||+ ||
T Consensus 166 ~~~~~~d~S~l~~~p~t~~lliLS~es~-------~l~~~d~~G~~~~~~~L~~g~~gl-~~~~~QpEGIa~d~~G~-LY 236 (248)
T PF06977_consen 166 DKLFVRDLSGLSYDPRTGHLLILSDESR-------LLLELDRQGRVVSSLSLDRGFHGL-SKDIPQPEGIAFDPDGN-LY 236 (248)
T ss_dssp HT--SS---EEEEETTTTEEEEEETTTT-------EEEEE-TT--EEEEEE-STTGGG--SS---SEEEEEE-TT---EE
T ss_pred ccceeccccceEEcCCCCeEEEEECCCC-------eEEEECCCCCEEEEEEeCCcccCc-ccccCCccEEEECCCCC-EE
Confidence 01123456789998888888887654 4888997665333333221 0000 00011456789999995 66
Q ss_pred EEEe
Q 039497 558 FTAN 561 (642)
Q Consensus 558 ~~~~ 561 (642)
+++.
T Consensus 237 IvsE 240 (248)
T PF06977_consen 237 IVSE 240 (248)
T ss_dssp EEET
T ss_pred EEcC
Confidence 6663
No 275
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.15 E-value=0.021 Score=58.68 Aligned_cols=133 Identities=15% Similarity=0.126 Sum_probs=93.8
Q ss_pred CceeEEEEECCCCccccceeeCCC--CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCC
Q 039497 458 GHKNLFVLDAVNGEFNGDIRQLTD--GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEG 535 (642)
Q Consensus 458 g~~~l~~~d~~~g~~~~~~~~l~~--~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 535 (642)
+...|+++++..|+. -..++. +.+.+....|+.+-..|+-.+.+ .++..|++..+...++......
T Consensus 78 ~~g~v~~ys~~~g~i---t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad--------~~v~~~~~~~~~~~~~~~~~~~- 145 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEI---TAKLSTDKHYGNVNEILDAQRLGCIYSVGAD--------LKVVYILEKEKVIIRIWKEQKP- 145 (541)
T ss_pred CCccEEEEEecCCeE---EEEEecCCCCCcceeeecccccCceEecCCc--------eeEEEEecccceeeeeeccCCC-
Confidence 345899999998886 445553 34455666666655544444433 3488888877776666543322
Q ss_pred CCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecC----
Q 039497 536 SGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPG---- 610 (642)
Q Consensus 536 ~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~d---- 610 (642)
.+..+..+|||+.|+..+. .|-+|++.+++ +...|.+.+.+..++|.-+
T Consensus 146 -------~~~sl~is~D~~~l~~as~-------------------~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~ 199 (541)
T KOG4547|consen 146 -------LVSSLCISPDGKILLTASR-------------------QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGI 199 (541)
T ss_pred -------ccceEEEcCCCCEEEeccc-------------------eEEEEEccCceEEEEecCCCcceEEEEEEEecccc
Confidence 4678999999998877653 78899998877 6678888888889999877
Q ss_pred -CceEEeecCCCcccccce
Q 039497 611 -NQLDLGKLRLEDDIGDKL 628 (642)
Q Consensus 611 -g~~~~~~~~~~~~~~~~~ 628 (642)
|++++++.-.+..++-+.
T Consensus 200 ~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 200 IGKYVLSSAAAERGITVWV 218 (541)
T ss_pred ccceeeeccccccceeEEE
Confidence 899999877775554443
No 276
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.14 E-value=0.041 Score=54.58 Aligned_cols=201 Identities=9% Similarity=-0.014 Sum_probs=111.8
Q ss_pred CCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC--
Q 039497 286 NPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG-- 363 (642)
Q Consensus 286 ~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~-- 363 (642)
...|...-+.++++... ..+..+|-.........++...-......|.|..-.++..+..+ .++.+.|...
T Consensus 248 ~Ls~n~~~~nVLaSgsa-----D~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D--~~V~l~D~R~~~ 320 (463)
T KOG0270|consen 248 ALSWNRNFRNVLASGSA-----DKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYD--GTVALKDCRDPS 320 (463)
T ss_pred HHHhccccceeEEecCC-----CceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEecccc--ceEEeeeccCcc
Confidence 44566666666655322 22355565544333333332222335678888776666654333 4555555542
Q ss_pred CCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEE
Q 039497 364 SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSC 443 (642)
Q Consensus 364 ~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 443 (642)
.........+.+..+.|.|.....++++ .+++.++-+++.. . +. ....+..+. ..+..+.+
T Consensus 321 ~s~~~wk~~g~VEkv~w~~~se~~f~~~------tddG~v~~~D~R~--~-----~~-----~vwt~~AHd-~~ISgl~~ 381 (463)
T KOG0270|consen 321 NSGKEWKFDGEVEKVAWDPHSENSFFVS------TDDGTVYYFDIRN--P-----GK-----PVWTLKAHD-DEISGLSV 381 (463)
T ss_pred ccCceEEeccceEEEEecCCCceeEEEe------cCCceEEeeecCC--C-----CC-----ceeEEEecc-CCcceEEe
Confidence 1112222267789999999999888888 4577888777765 3 22 566666666 77888888
Q ss_pred CCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC-CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG 522 (642)
Q Consensus 444 SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~-~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~ 522 (642)
++.-..++.+...++.-.||.++...++. ..-... -+.....++.|+--.++..+... ..+.+||+.+
T Consensus 382 n~~~p~~l~t~s~d~~Vklw~~~~~~~~~----v~~~~~~~~rl~c~~~~~~~a~~la~GG~k-------~~~~vwd~~~ 450 (463)
T KOG0270|consen 382 NIQTPGLLSTASTDKVVKLWKFDVDSPKS----VKEHSFKLGRLHCFALDPDVAFTLAFGGEK-------AVLRVWDIFT 450 (463)
T ss_pred cCCCCcceeeccccceEEEEeecCCCCcc----cccccccccceeecccCCCcceEEEecCcc-------ceEEEeeccc
Confidence 88777777776544544555555444332 111111 01233445666654443333322 2478888755
Q ss_pred C
Q 039497 523 S 523 (642)
Q Consensus 523 ~ 523 (642)
.
T Consensus 451 ~ 451 (463)
T KOG0270|consen 451 N 451 (463)
T ss_pred C
Confidence 4
No 277
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.12 E-value=0.017 Score=56.09 Aligned_cols=198 Identities=9% Similarity=0.034 Sum_probs=114.2
Q ss_pred cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC-CCCccCcEECCCCCeE
Q 039497 372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE-TGNNAFPSCSPDGKFL 450 (642)
Q Consensus 372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~SpDg~~l 450 (642)
.+-+..+.||.++++|+-.. ++-...+|.++..-- .+ .+ ++-.+..++ ...+..+.|.- |+..
T Consensus 56 ~GCiNAlqFS~N~~~L~SGG-------DD~~~~~W~~de~~~-----~k--~~-KPI~~~~~~H~SNIF~L~F~~-~N~~ 119 (609)
T KOG4227|consen 56 TGCINALQFSHNDRFLASGG-------DDMHGRVWNVDELMV-----RK--TP-KPIGVMEHPHRSNIFSLEFDL-ENRF 119 (609)
T ss_pred ccccceeeeccCCeEEeecC-------CcceeeeechHHHHh-----hc--CC-CCceeccCccccceEEEEEcc-CCee
Confidence 35677899999999887654 467888998864100 11 00 122222222 13455677765 4455
Q ss_pred EEEeCCCCceeEEEEECCCCccccceeeCCC--CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc--eE
Q 039497 451 VFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD--GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG--LR 526 (642)
Q Consensus 451 ~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~--~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~--~~ 526 (642)
+|...+. .++.+.|+.+.+. +..... ..+.+.+..-+|-.+.|+..+..+. +.+||..... ..
T Consensus 120 ~~SG~~~--~~VI~HDiEt~qs---i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~--------V~~~D~Rd~~~~~~ 186 (609)
T KOG4227|consen 120 LYSGERW--GTVIKHDIETKQS---IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKL--------VSFIDNRDRQNPIS 186 (609)
T ss_pred EecCCCc--ceeEeeeccccee---eeeecccCcccceeecccCCCCceEEEEecCce--------EEEEeccCCCCCCc
Confidence 6666543 4888999998775 333322 2246777788888777777666543 7778875432 23
Q ss_pred EeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee------eccCCCC
Q 039497 527 RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR------RLTWNGY 600 (642)
Q Consensus 527 ~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~lt~~~~ 600 (642)
.+...+... .+..+-|.|-.-.|+.+.+..+.. .||-.......+- -|.....
T Consensus 187 ~~~~AN~~~-------~F~t~~F~P~~P~Li~~~~~~~G~--------------~~~D~R~~~~~~~~~~~~~~L~~~~~ 245 (609)
T KOG4227|consen 187 LVLPANSGK-------NFYTAEFHPETPALILVNSETGGP--------------NVFDRRMQARPVYQRSMFKGLPQENT 245 (609)
T ss_pred eeeecCCCc-------cceeeeecCCCceeEEeccccCCC--------------CceeeccccchHHhhhccccCcccch
Confidence 333333333 567788999888887776654421 4553322111111 1111122
Q ss_pred CCCCcEEecCCceEEeecC
Q 039497 601 ENGTPAWHPGNQLDLGKLR 619 (642)
Q Consensus 601 ~~~~~~~s~dg~~~~~~~~ 619 (642)
.+.+..|+|.|..|++.+.
T Consensus 246 ~~M~~~~~~~G~Q~msiRR 264 (609)
T KOG4227|consen 246 EWMGSLWSPSGNQFMSIRR 264 (609)
T ss_pred hhhheeeCCCCCeehhhhc
Confidence 3468899999977776543
No 278
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=97.10 E-value=0.45 Score=49.21 Aligned_cols=350 Identities=18% Similarity=0.174 Sum_probs=180.5
Q ss_pred cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCC--ceeEeecCC---CcceE-eeCCe-EEEEEecCCCc
Q 039497 142 DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPN--KRVIVCERG---GWPTW-SGDST-IYFHRQADDGW 214 (642)
Q Consensus 142 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~l~~~~~---~~~~w-spdg~-~~~~~~~~~g~ 214 (642)
.....+.+++..++..+.+. .+.+|+...+. ...+..... ....+ ++++. ++......++.
T Consensus 68 i~~~~~~~~~~~~~~~~~d~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 135 (466)
T COG2319 68 ITSIAFSPDGELLLSGSSDG------------TIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGT 135 (466)
T ss_pred EEEEEECCCCcEEEEecCCC------------cEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCcc
Confidence 34467888888888766433 57777777764 223322221 12233 67776 44333233554
Q ss_pred eEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCC
Q 039497 215 WSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSE 294 (642)
Q Consensus 215 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~ 294 (642)
..+|.+..... ....+..+...+..+.++|+++.++.... ....+.+|++.. ++
T Consensus 136 ~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--------------~~ 189 (466)
T COG2319 136 VKLWDLSTPGK--------LIRTLEGHSESVTSLAFSPDGKLLASGSS----LDGTIKLWDLRT--------------GK 189 (466)
T ss_pred EEEEEecCCCe--------EEEEEecCcccEEEEEECCCCCEEEecCC----CCCceEEEEcCC--------------Cc
Confidence 44444432112 34555555555667889999996666422 234677776622 01
Q ss_pred EEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeE-Eee-c
Q 039497 295 FIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWT-LIK-D 372 (642)
Q Consensus 295 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~-l~~-~ 372 (642)
.+... ... ........|+|++..++.....+ ..|.+++...+.... ... .
T Consensus 190 ~~~~~-------------------~~~-------~~~v~~~~~~~~~~~~~~~~~~d--~~i~~wd~~~~~~~~~~~~~~ 241 (466)
T COG2319 190 PLSTL-------------------AGH-------TDPVSSLAFSPDGGLLIASGSSD--GTIRLWDLSTGKLLRSTLSGH 241 (466)
T ss_pred eEEee-------------------ccC-------CCceEEEEEcCCcceEEEEecCC--CcEEEEECCCCcEEeeecCCC
Confidence 11110 000 01112346778887333332223 333344666444333 122 1
Q ss_pred CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEE
Q 039497 373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452 (642)
Q Consensus 373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~ 452 (642)
.......|+|++..++... .+..+++|++.. . .. ....+..+. ..+....|+|++..++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~-------~d~~~~~~~~~~--~------~~----~~~~~~~~~-~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 242 SDSVVSSFSPDGSLLASGS-------SDGTIRLWDLRS--S------SS----LLRTLSGHS-SSVLSVAFSPDGKLLAS 301 (466)
T ss_pred CcceeEeECCCCCEEEEec-------CCCcEEEeeecC--C------Cc----EEEEEecCC-ccEEEEEECCCCCEEEE
Confidence 1111227999996666333 478899999865 1 20 122222222 56667799998888887
Q ss_pred EeCCCCceeEEEEECCCCccccceeeCC--CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497 453 RSGRSGHKNLFVLDAVNGEFNGDIRQLT--DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530 (642)
Q Consensus 453 ~~~~~g~~~l~~~d~~~g~~~~~~~~l~--~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 530 (642)
.+.+ +. +.+|+..++.. ..... .+...+..+.|++++..++...... ..+..|++.... .....
T Consensus 302 ~~~d-~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-------~~~~~~~~~~~~-~~~~~ 367 (466)
T COG2319 302 GSSD-GT--VRLWDLETGKL---LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDD-------GTIRLWDLRTGK-PLKTL 367 (466)
T ss_pred eeCC-Cc--EEEEEcCCCce---EEEeeecccCCceEEEEECCCCCEEEEeecCC-------CcEEeeecCCCc-eeEEe
Confidence 4443 43 55668776654 23333 2322355667744435555553221 225667776665 21211
Q ss_pred cCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCC-CCCCCcEEec
Q 039497 531 AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNG-YENGTPAWHP 609 (642)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~-~~~~~~~~s~ 609 (642)
.... ....+.+++ . ...+..... ...+..|+............. .......+++
T Consensus 368 -~~~~-------~~~~~~~~~-~-~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (466)
T COG2319 368 -EGHS-------NVLSVSFSP-D-GRVVSSGST---------------DGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP 422 (466)
T ss_pred -cCCc-------eEEEEEECC-C-CCEEEEecC---------------CCceEEEecccCeeeeeccCCCCcEEEEEECC
Confidence 1111 145677888 5 444441111 126777777665544333333 4556778888
Q ss_pred CCceEEe
Q 039497 610 GNQLDLG 616 (642)
Q Consensus 610 dg~~~~~ 616 (642)
++.++++
T Consensus 423 ~~~~~~~ 429 (466)
T COG2319 423 DGKSLAS 429 (466)
T ss_pred CCcEEEE
Confidence 8887766
No 279
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=97.10 E-value=0.23 Score=53.13 Aligned_cols=140 Identities=14% Similarity=0.078 Sum_probs=93.0
Q ss_pred CceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE
Q 039497 352 LNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI 429 (642)
Q Consensus 352 ~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 429 (642)
....|.++++.++....+.. ...+..+... +..++..+. ++.+.+|++.. +. ....
T Consensus 309 ~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~-------d~~v~VW~~~~--------~~-----cl~s 366 (537)
T KOG0274|consen 309 RDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY-------DGTVKVWDPRT--------GK-----CLKS 366 (537)
T ss_pred CCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec-------CceEEEEEhhh--------ce-----eeee
Confidence 34678888888777666554 4445566655 777777764 56899999976 33 6677
Q ss_pred ccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCC-ccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCC
Q 039497 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG-EFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD 508 (642)
Q Consensus 430 l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g-~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~ 508 (642)
+..+. ..+..+.+... ..++-.+.+ ..|.+||+.++ +. +..+..+...+. .....++.|+-.+.++.
T Consensus 367 l~gH~-~~V~sl~~~~~-~~~~Sgs~D---~~IkvWdl~~~~~c---~~tl~~h~~~v~--~l~~~~~~Lvs~~aD~~-- 434 (537)
T KOG0274|consen 367 LSGHT-GRVYSLIVDSE-NRLLSGSLD---TTIKVWDLRTKRKC---IHTLQGHTSLVS--SLLLRDNFLVSSSADGT-- 434 (537)
T ss_pred ecCCc-ceEEEEEecCc-ceEEeeeec---cceEeecCCchhhh---hhhhcCCccccc--ccccccceeEecccccc--
Confidence 77776 77777766543 555544433 47899999987 54 455555544433 33445677777666654
Q ss_pred CCCceeEEEEeCCCCceEEeeec
Q 039497 509 NVEAFSLYVIKPDGSGLRRIHVA 531 (642)
Q Consensus 509 ~~~~~~l~~~d~~~~~~~~l~~~ 531 (642)
|.+||...++..+....
T Consensus 435 ------Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 435 ------IKLWDAEEGECLRTLEG 451 (537)
T ss_pred ------EEEeecccCceeeeecc
Confidence 99999988887766653
No 280
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.06 E-value=0.27 Score=55.41 Aligned_cols=121 Identities=10% Similarity=0.065 Sum_probs=69.8
Q ss_pred CccEEcCCCCEEEEE--ecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEE
Q 039497 333 SFPSFSPDGGLIVFN--HDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV 408 (642)
Q Consensus 333 ~~~~~spdg~~l~~~--~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~ 408 (642)
..+.|--||++++.. ....+...|.+++.++ ....... .+....+.|-|.|..++..... ..+..+.++.-
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~----~sd~~IvffEr 273 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDREG-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCK----TSDSDIVFFER 273 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEecccc-hhhcccCcccccccceeecCCCCeEeeeeec----CCCCcEEEEec
Confidence 357899999988873 3334557888888773 2221111 3445678999999999877653 33444444433
Q ss_pred EeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC
Q 039497 409 SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN 469 (642)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~ 469 (642)
+ |.+-..-..+..... ..+..+.|+.++..|+..........|.+|-+..
T Consensus 274 ----N------GL~hg~f~l~~p~de-~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 274 ----N------GLRHGEFVLPFPLDE-KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred ----C------CccccccccCCcccc-cchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 2 211000001111111 2367799999999888754433334577776543
No 281
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.04 E-value=0.058 Score=55.54 Aligned_cols=139 Identities=15% Similarity=0.106 Sum_probs=89.5
Q ss_pred CCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccc
Q 039497 351 ELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD 426 (642)
Q Consensus 351 ~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 426 (642)
.....|+++++.+++...-.. .+.+..+.|+.+-.-| |.. ..+..+..|.... + .
T Consensus 77 t~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ci-yS~------~ad~~v~~~~~~~---------~-----~ 135 (541)
T KOG4547|consen 77 TPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCI-YSV------GADLKVVYILEKE---------K-----V 135 (541)
T ss_pred cCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCce-Eec------CCceeEEEEeccc---------c-----e
Confidence 446789999998888755443 3455566666555444 443 1244444444433 1 3
Q ss_pred eEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecC-----CCEEEEE
Q 039497 427 VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK-----GDLIAFS 501 (642)
Q Consensus 427 ~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spd-----G~~l~~~ 501 (642)
...+-......+..+.++|||+.++.++. +|-++|+.+++. +..++.+...+..++|..+ |++++-.
T Consensus 136 ~~~~~~~~~~~~~sl~is~D~~~l~~as~-----~ik~~~~~~kev---v~~ftgh~s~v~t~~f~~~~~g~~G~~vLss 207 (541)
T KOG4547|consen 136 IIRIWKEQKPLVSSLCISPDGKILLTASR-----QIKVLDIETKEV---VITFTGHGSPVRTLSFTTLIDGIIGKYVLSS 207 (541)
T ss_pred eeeeeccCCCccceEEEcCCCCEEEeccc-----eEEEEEccCceE---EEEecCCCcceEEEEEEEeccccccceeeec
Confidence 33333332246678899999999887763 899999999997 7888988888888888776 6665544
Q ss_pred ecCCCCCCCCceeEEEEeCCCC
Q 039497 502 SNRHNPDNVEAFSLYVIKPDGS 523 (642)
Q Consensus 502 ~~~~~~~~~~~~~l~~~d~~~~ 523 (642)
..-. ....+|+.+-+.+
T Consensus 208 a~~~-----r~i~~w~v~~~~k 224 (541)
T KOG4547|consen 208 AAAE-----RGITVWVVEKEDK 224 (541)
T ss_pred cccc-----cceeEEEEEcccc
Confidence 4332 3445666666443
No 282
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=96.97 E-value=0.03 Score=58.60 Aligned_cols=194 Identities=12% Similarity=0.097 Sum_probs=117.6
Q ss_pred eeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497 354 AGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT 431 (642)
Q Consensus 354 ~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 431 (642)
..+.++.+.+.+...... ...+.++..-.++. ++-.+ -+.+..+|.+.. ....+.
T Consensus 81 ~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgS-------WD~TakvW~~~~---------------l~~~l~ 137 (745)
T KOG0301|consen 81 TTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGS-------WDSTAKVWRIGE---------------LVYSLQ 137 (745)
T ss_pred ceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecc-------cccceEEecchh---------------hhcccC
Confidence 566677777766544333 34455665555555 44444 378899999854 334455
Q ss_pred ccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCC
Q 039497 432 KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVE 511 (642)
Q Consensus 432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~ 511 (642)
.+. ..++.+..-|+++++ ..+ .+..|.+|.- |+. ++.+..+...+.++++-+++.+ +-.++++.
T Consensus 138 gH~-asVWAv~~l~e~~~v-Tgs---aDKtIklWk~--~~~---l~tf~gHtD~VRgL~vl~~~~f-lScsNDg~----- 201 (745)
T KOG0301|consen 138 GHT-ASVWAVASLPENTYV-TGS---ADKTIKLWKG--GTL---LKTFSGHTDCVRGLAVLDDSHF-LSCSNDGS----- 201 (745)
T ss_pred Ccc-hheeeeeecCCCcEE-ecc---CcceeeeccC--Cch---hhhhccchhheeeeEEecCCCe-EeecCCce-----
Confidence 555 677777777888443 333 4457888875 443 5777777778888899888764 44444443
Q ss_pred ceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc
Q 039497 512 AFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG 591 (642)
Q Consensus 512 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 591 (642)
|.+|+++++.+.... ++.. .++.+....++..|+.+..+... +||..+ .-
T Consensus 202 ---Ir~w~~~ge~l~~~~--ghtn-------~vYsis~~~~~~~Ivs~gEDrtl---------------riW~~~---e~ 251 (745)
T KOG0301|consen 202 ---IRLWDLDGEVLLEMH--GHTN-------FVYSISMALSDGLIVSTGEDRTL---------------RIWKKD---EC 251 (745)
T ss_pred ---EEEEeccCceeeeee--ccce-------EEEEEEecCCCCeEEEecCCceE---------------EEeecC---ce
Confidence 999999776655443 4444 56677766777767666655432 555433 22
Q ss_pred eeeccCCCCCCCCcEEecCCceEEe
Q 039497 592 LRRLTWNGYENGTPAWHPGNQLDLG 616 (642)
Q Consensus 592 ~~~lt~~~~~~~~~~~s~dg~~~~~ 616 (642)
.+.|+-....+.+..+-++|..++.
T Consensus 252 ~q~I~lPttsiWsa~~L~NgDIvvg 276 (745)
T KOG0301|consen 252 VQVITLPTTSIWSAKVLLNGDIVVG 276 (745)
T ss_pred EEEEecCccceEEEEEeeCCCEEEe
Confidence 3344433334455555555555543
No 283
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.93 E-value=0.38 Score=45.49 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=27.8
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK 371 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~ 371 (642)
+..+||||+..|||... .+.|.++|+.+.+...+..
T Consensus 47 Rkl~WSpD~tlLa~a~S---~G~i~vfdl~g~~lf~I~p 82 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAES---TGTIRVFDLMGSELFVIPP 82 (282)
T ss_pred eEEEECCCCcEEEEEcC---CCeEEEEecccceeEEcCc
Confidence 35689999999999754 5788888998877665543
No 284
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=96.93 E-value=0.12 Score=54.98 Aligned_cols=120 Identities=16% Similarity=0.083 Sum_probs=76.2
Q ss_pred cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEE
Q 039497 372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451 (642)
Q Consensus 372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~ 451 (642)
.+.+..+.++|=+..++.+. .+-.++||.-.. . .. ....+.... ..+..++|||-.-.++
T Consensus 398 ~g~v~~v~~nPF~~k~fls~-------gDW~vriWs~~~--~-----~~-----Pl~~~~~~~-~~v~~vaWSptrpavF 457 (555)
T KOG1587|consen 398 IGPVYAVSRNPFYPKNFLSV-------GDWTVRIWSEDV--I-----AS-----PLLSLDSSP-DYVTDVAWSPTRPAVF 457 (555)
T ss_pred CcceEeeecCCCccceeeee-------ccceeEeccccC--C-----CC-----cchhhhhcc-ceeeeeEEcCcCceEE
Confidence 55677888888777776665 378899998764 1 11 222222222 4477899999776666
Q ss_pred EEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG 522 (642)
Q Consensus 452 ~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~ 522 (642)
++.+.+ +.|++||+.-... .++..+.-.........|++.|+.|+.....+. ++++++..
T Consensus 458 ~~~d~~--G~l~iWDLl~~~~-~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~--------~~~~~l~~ 517 (555)
T KOG1587|consen 458 ATVDGD--GNLDIWDLLQDDE-EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGT--------THILKLSE 517 (555)
T ss_pred EEEcCC--Cceehhhhhcccc-CCcccccccccccceeecCCCCcEEEEecCCCc--------EEEEEcCc
Confidence 666544 4788888864332 112222222234456689999999988887765 88888753
No 285
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.89 E-value=0.14 Score=57.51 Aligned_cols=197 Identities=15% Similarity=0.215 Sum_probs=112.3
Q ss_pred cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe---
Q 039497 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF--- 410 (642)
Q Consensus 335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~--- 410 (642)
+.|-.|+..|+++.. .+.|.++|.++.....+.. ..++..+.||||++.+++++.. .++.+..-++
T Consensus 74 ~~fl~d~~~i~v~~~---~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~-------~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 74 VQFLADTNSICVITA---LGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGR-------QTLLFMTKDFEPI 143 (1265)
T ss_pred EEEecccceEEEEec---CCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCC-------cEEEEEeccccch
Confidence 356667777777643 3667777877776555544 7789999999999999998752 1111111100
Q ss_pred ---------ecCCC---CCCCCCccccceEEccccC--------------------CCCccCcEECCCCCeEEEEeC--C
Q 039497 411 ---------QLDPS---DDNNREEIPCDVKILTKEE--------------------TGNNAFPSCSPDGKFLVFRSG--R 456 (642)
Q Consensus 411 ---------~~~~~---~~~~~~~~~~~~~~l~~~~--------------------~~~~~~~~~SpDg~~l~~~~~--~ 456 (642)
....+ -..|+ +..++.... ......+.|--||++++.... .
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGr-----keTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~ 218 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGR-----KETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESE 218 (1265)
T ss_pred hccccccccccccccceecccc-----cceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEecc
Confidence 00000 01122 111111000 012234889999999987542 3
Q ss_pred CCceeEEEEECCCCccccceeeCCC-CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee-cCCC
Q 039497 457 SGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV-AGPE 534 (642)
Q Consensus 457 ~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~ 534 (642)
.+...|-+||-+ |.. ..... ..+....++|-|.|.+|+....... ...|..+..+|-....... ...+
T Consensus 219 ~~~RkirV~drE-g~L----ns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-----d~~IvffErNGL~hg~f~l~~p~d 288 (1265)
T KOG1920|consen 219 TGTRKIRVYDRE-GAL----NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-----DSDIVFFERNGLRHGEFVLPFPLD 288 (1265)
T ss_pred CCceeEEEeccc-chh----hcccCcccccccceeecCCCCeEeeeeecCC-----CCcEEEEecCCccccccccCCccc
Confidence 344678888877 552 22222 2233456799999999887776653 2257777766533322211 1111
Q ss_pred CCCCcccccccceEEcCCCCEEEEEEec
Q 039497 535 GSGDVDRERINHVCFSADGEWLLFTANL 562 (642)
Q Consensus 535 ~~~~~~~~~~~~~~~S~Dg~~l~~~~~~ 562 (642)
. ..+..+.|+.++..|+.....
T Consensus 289 e------~~ve~L~Wns~sdiLAv~~~~ 310 (1265)
T KOG1920|consen 289 E------KEVEELAWNSNSDILAVVTSN 310 (1265)
T ss_pred c------cchheeeecCCCCceeeeecc
Confidence 1 136789999999988875433
No 286
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.88 E-value=0.12 Score=54.50 Aligned_cols=266 Identities=15% Similarity=0.111 Sum_probs=134.7
Q ss_pred cceEeeCCeEEEEEecCCCceEEEEEecCCCcc---cccCC---ccceeeCCCCCccccceeecCCcEEEEEEeccCCce
Q 039497 195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLE---FLGFP---IAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNF 268 (642)
Q Consensus 195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~---~~~~~---~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~ 268 (642)
...|....-.+... +.+|-..+.+++.++... .+..+ .--+.+.++...+..+.|..+.++|-. +...
T Consensus 19 c~~WNke~gyIAcg-G~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTt-----SDt~ 92 (1189)
T KOG2041|consen 19 CAEWNKESGYIACG-GADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTT-----SDTS 92 (1189)
T ss_pred EEEEcccCCeEEec-cccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccc-----cCCC
Confidence 36888776666666 678877787776655311 00000 000112233334444445444443333 1222
Q ss_pred eeEEEEEee----------cCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCC---CceeEEeeeCCCcc
Q 039497 269 RHIEIYDLT----------LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASP---VKELRMLRLNGSFP 335 (642)
Q Consensus 269 ~~i~~~d~~----------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 335 (642)
.-|-+|=+- ......+.+..|..||++|..+-++|.. + ...+++. .+.+.. ..-.+.
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGav------I--VGsvdGNRIwgKeLkg--~~l~hv 162 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAV------I--VGSVDGNRIWGKELKG--QLLAHV 162 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCE------E--EEeeccceecchhcch--heccce
Confidence 355566551 1223345577899999999998777762 1 1111111 011110 111366
Q ss_pred EEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-------------cCCceeeee--------ecCCCEEEEEEcCC
Q 039497 336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-------------DRTAFYNSW--------SPTEKHVIYTSTGP 394 (642)
Q Consensus 336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-------------~~~~~~~~~--------spdg~~l~~~~~~~ 394 (642)
.||+|.+.++|... ++.+.++|..+.-.+.+.. ...+..+.| -||.-.|+++-.
T Consensus 163 ~ws~D~~~~Lf~~a---nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~-- 237 (1189)
T KOG2041|consen 163 LWSEDLEQALFKKA---NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA-- 237 (1189)
T ss_pred eecccHHHHHhhhc---CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc--
Confidence 89999998888543 2456666655542222111 111112222 235555555432
Q ss_pred CcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCC------ceeEEEEECC
Q 039497 395 IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG------HKNLFVLDAV 468 (642)
Q Consensus 395 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g------~~~l~~~d~~ 468 (642)
++..+|.+-.. + . .+..+..+ ..+....|+++|..|+....... ...|..+..-
T Consensus 238 -----nGr~QiMR~eN--D------~-----~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~ 297 (1189)
T KOG2041|consen 238 -----NGRMQIMRSEN--D------P-----EPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY 297 (1189)
T ss_pred -----CceehhhhhcC--C------C-----CCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEeccc
Confidence 45555554433 2 1 22222222 45667899999999998765321 1244445444
Q ss_pred CCccccceeeCCCCCCcccceeEecCCCEEEEEecCC
Q 039497 469 NGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH 505 (642)
Q Consensus 469 ~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~ 505 (642)
|+. +..+......+..+.|--.|-+|+.+.+.-
T Consensus 298 -G~i---~gtlkvpg~~It~lsWEg~gLriA~Avdsf 330 (1189)
T KOG2041|consen 298 -GHI---VGTLKVPGSCITGLSWEGTGLRIAIAVDSF 330 (1189)
T ss_pred -hhh---eEEEecCCceeeeeEEcCCceEEEEEecce
Confidence 444 444444444566777777777777766543
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.84 E-value=0.45 Score=44.98 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=39.6
Q ss_pred CceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCC---ceeEeecCCC-----cceEeeCCeEEEEEecCCCce
Q 039497 144 SPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPN---KRVIVCERGG-----WPTWSGDSTIYFHRQADDGWW 215 (642)
Q Consensus 144 ~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~l~~~~~~-----~~~wspdg~~~~~~~~~~g~~ 215 (642)
+.+.++|||.||...+. .|.+....+.- ..+...+... .++||||+.+++.+ ...|+.
T Consensus 2 ~~~~~~~Gk~lAi~qd~-------------~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a-~S~G~i 67 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQ-------------CIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYA-ESTGTI 67 (282)
T ss_pred ceeecCCCcEEEEEecc-------------EEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEE-cCCCeE
Confidence 35789999999988642 34454444331 1222223332 35999999888887 456744
Q ss_pred EEEEEecCCC
Q 039497 216 SIFRVSFPEN 225 (642)
Q Consensus 216 ~l~~~~~~~~ 225 (642)
.+| |+.+.
T Consensus 68 ~vf--dl~g~ 75 (282)
T PF15492_consen 68 RVF--DLMGS 75 (282)
T ss_pred EEE--ecccc
Confidence 444 66654
No 288
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.83 E-value=0.049 Score=56.69 Aligned_cols=204 Identities=18% Similarity=0.229 Sum_probs=101.1
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEE-EEEee
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIA-RVSFQ 411 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~-~~~~~ 411 (642)
..+.++|+|+.++... ++...|+. ..+.. .. ..+....+.|++.++ +++.. ....+.|+ .++.
T Consensus 36 ~~ls~npngr~v~V~g--~geY~iyt--~~~~r--~k-~~G~g~~~vw~~~n~-yAv~~-------~~~~I~I~kn~~~- 99 (443)
T PF04053_consen 36 QSLSHNPNGRFVLVCG--DGEYEIYT--ALAWR--NK-AFGSGLSFVWSSRNR-YAVLE-------SSSTIKIYKNFKN- 99 (443)
T ss_dssp SEEEE-TTSSEEEEEE--TTEEEEEE--TTTTE--EE-EEEE-SEEEE-TSSE-EEEE--------TTS-EEEEETTEE-
T ss_pred eeEEECCCCCEEEEEc--CCEEEEEE--ccCCc--cc-ccCceeEEEEecCcc-EEEEE-------CCCeEEEEEcCcc-
Confidence 4568899999988854 34444444 22222 21 134556789999666 44443 14566664 2322
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeE
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~ 491 (642)
. ..+.+.... .... -|. |..|...+.. .|.++|.++++. +..+.-. .+..+.|
T Consensus 100 -~------------~~k~i~~~~--~~~~-If~--G~LL~~~~~~----~i~~yDw~~~~~---i~~i~v~--~vk~V~W 152 (443)
T PF04053_consen 100 -E------------VVKSIKLPF--SVEK-IFG--GNLLGVKSSD----FICFYDWETGKL---IRRIDVS--AVKYVIW 152 (443)
T ss_dssp --------------TT-----SS---EEE-EE---SSSEEEEETT----EEEEE-TTT--E---EEEESS---E-EEEEE
T ss_pred -c------------cceEEcCCc--ccce-EEc--CcEEEEECCC----CEEEEEhhHcce---eeEEecC--CCcEEEE
Confidence 1 212222211 1111 122 7777776642 599999999886 6666643 2578899
Q ss_pred ecCCCEEEEEecCCCCCCCCceeEEEEeCCCC------------ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEE
Q 039497 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS------------GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559 (642)
Q Consensus 492 spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~------------~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~ 559 (642)
|++|+++++.+.+. +|+++.+-. ....+..-. . .+.+..|--| .++|+
T Consensus 153 s~~g~~val~t~~~---------i~il~~~~~~~~~~~~~g~e~~f~~~~E~~--~-------~IkSg~W~~d--~fiYt 212 (443)
T PF04053_consen 153 SDDGELVALVTKDS---------IYILKYNLEAVAAIPEEGVEDAFELIHEIS--E-------RIKSGCWVED--CFIYT 212 (443)
T ss_dssp -TTSSEEEEE-S-S---------EEEEEE-HHHHHHBTTTB-GGGEEEEEEE---S---------SEEEEETT--EEEEE
T ss_pred ECCCCEEEEEeCCe---------EEEEEecchhcccccccCchhceEEEEEec--c-------eeEEEEEEcC--EEEEE
Confidence 99999999998765 677665444 344444311 1 4677888766 66666
Q ss_pred EecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecC-CceEEeecC
Q 039497 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPG-NQLDLGKLR 619 (642)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~d-g~~~~~~~~ 619 (642)
... +|.. +-+|+...+..-....+-+.+.+. ++.++-.++
T Consensus 213 T~~------------------~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~ 253 (443)
T PF04053_consen 213 TSN------------------HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRD 253 (443)
T ss_dssp -TT------------------EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT
T ss_pred cCC------------------eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECC
Confidence 532 5655 344454444443334455566663 344444443
No 289
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.82 E-value=0.49 Score=45.12 Aligned_cols=199 Identities=14% Similarity=0.131 Sum_probs=112.1
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
....|+|+.+.|+.+. +....|.-++.+|.-.+.+.. -.....+.|.-+|++++.-. .+..+.+..++.
T Consensus 89 S~LTynp~~rtLFav~--n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dE-------R~~~l~~~~vd~ 159 (316)
T COG3204 89 SSLTYNPDTRTLFAVT--NKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDE-------RDRALYLFTVDA 159 (316)
T ss_pred cceeeCCCcceEEEec--CCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEeh-------hcceEEEEEEcC
Confidence 5678999999877765 445788888988877766655 45566778887776554332 255566666654
Q ss_pred ecCCCCCCCCCccccceEEccccC----CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC---
Q 039497 411 QLDPSDDNNREEIPCDVKILTKEE----TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP--- 483 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~--- 483 (642)
+ +..+..+...++-+. ......++|.|..+.++++..+ ....||.++...... ...+...+
T Consensus 160 --~------t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr-~P~~I~~~~~~~~~l---~~~~~~~~~~~ 227 (316)
T COG3204 160 --D------TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER-NPIGIFEVTQSPSSL---SVHASLDPTAD 227 (316)
T ss_pred --C------ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEcc-CCcEEEEEecCCccc---ccccccCcccc
Confidence 2 211111111221111 1234568999999999988876 456788887432111 01111111
Q ss_pred -----CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec-CCCCCCCcccccccceEEcCCCCEEE
Q 039497 484 -----WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSADGEWLL 557 (642)
Q Consensus 484 -----~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~S~Dg~~l~ 557 (642)
..+.+..|.+....|++.+.... .|...|+++.-...+... +..+. ..+-++...++...+|. ||
T Consensus 228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr-------~l~Evd~~G~~~~~lsL~~g~~gL-~~dipqaEGiamDd~g~-lY 298 (316)
T COG3204 228 RDLFVLDVSGLEFNAITNSLLVLSDESR-------RLLEVDLSGEVIELLSLTKGNHGL-SSDIPQAEGIAMDDDGN-LY 298 (316)
T ss_pred cceEeeccccceecCCCCcEEEEecCCc-------eEEEEecCCCeeeeEEeccCCCCC-cccCCCcceeEECCCCC-EE
Confidence 13456678876666777766543 378888887654444322 11110 00111344566666665 66
Q ss_pred EEEe
Q 039497 558 FTAN 561 (642)
Q Consensus 558 ~~~~ 561 (642)
.++.
T Consensus 299 IvSE 302 (316)
T COG3204 299 IVSE 302 (316)
T ss_pred EEec
Confidence 5553
No 290
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.76 E-value=0.45 Score=45.35 Aligned_cols=188 Identities=17% Similarity=0.143 Sum_probs=100.0
Q ss_pred cCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCC
Q 039497 338 SPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD 416 (642)
Q Consensus 338 spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 416 (642)
.++++++++.. ....|+.+|..+++...... ...+.... ..++..+++... ++ .++.++. .
T Consensus 33 ~~~~~~v~~~~---~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~~-------~~--~l~~~d~--~--- 94 (238)
T PF13360_consen 33 VPDGGRVYVAS---GDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVYVGTS-------DG--SLYALDA--K--- 94 (238)
T ss_dssp EEETTEEEEEE---TTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEEEEET-------TS--EEEEEET--T---
T ss_pred EEeCCEEEEEc---CCCEEEEEECCCCCEEEEeecccccccee-eecccccccccc-------ee--eeEeccc--C---
Confidence 33455555542 45789999987776543333 33323322 345666766652 23 5666653 2
Q ss_pred CCCCCccccceEE--ccccC-CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC--CCCCCc------
Q 039497 417 DNNREEIPCDVKI--LTKEE-TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL--TDGPWI------ 485 (642)
Q Consensus 417 ~~~~~~~~~~~~~--l~~~~-~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l--~~~~~~------ 485 (642)
+|+ .... ....+ ...........+++.+++... ...|+.+|+++|+. +... ......
T Consensus 95 --tG~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~l~~~d~~tG~~---~w~~~~~~~~~~~~~~~~ 162 (238)
T PF13360_consen 95 --TGK----VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS---SGKLVALDPKTGKL---LWKYPVGEPRGSSPISSF 162 (238)
T ss_dssp --TSC----EEEEEEE-SSCTCSTB--SEEEEETTEEEEEET---CSEEEEEETTTTEE---EEEEESSTT-SS--EEEE
T ss_pred --Ccc----eeeeeccccccccccccccCceEecCEEEEEec---cCcEEEEecCCCcE---EEEeecCCCCCCcceeee
Confidence 332 2222 11111 011223344445777777763 34899999999985 2222 211111
Q ss_pred ---ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497 486 ---DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL 562 (642)
Q Consensus 486 ---~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~ 562 (642)
...+.++ +| .+++....+. ++.+|+.+++.. ... .... .......++..|++.+.+
T Consensus 163 ~~~~~~~~~~-~~-~v~~~~~~g~--------~~~~d~~tg~~~-w~~-~~~~---------~~~~~~~~~~~l~~~~~~ 221 (238)
T PF13360_consen 163 SDINGSPVIS-DG-RVYVSSGDGR--------VVAVDLATGEKL-WSK-PISG---------IYSLPSVDGGTLYVTSSD 221 (238)
T ss_dssp TTEEEEEECC-TT-EEEEECCTSS--------EEEEETTTTEEE-EEE-CSS----------ECECEECCCTEEEEEETT
T ss_pred cccccceEEE-CC-EEEEEcCCCe--------EEEEECCCCCEE-EEe-cCCC---------ccCCceeeCCEEEEEeCC
Confidence 1222333 44 6666655442 666699988744 332 2222 122257888888888733
Q ss_pred CCcccCCCCCCCCCCCCCcEEEEEcCCCcee
Q 039497 563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR 593 (642)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 593 (642)
+ .|+.+|+.+++..
T Consensus 222 ~-----------------~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 222 G-----------------RLYALDLKTGKVV 235 (238)
T ss_dssp T-----------------EEEEEETTTTEEE
T ss_pred C-----------------EEEEEECCCCCEE
Confidence 2 8999999988754
No 291
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.49 Score=53.15 Aligned_cols=109 Identities=14% Similarity=0.099 Sum_probs=68.8
Q ss_pred eeEecCCCEEE-EEecCCCCCCCCceeEEEEeCCCC-ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcc
Q 039497 489 PSWSPKGDLIA-FSSNRHNPDNVEAFSLYVIKPDGS-GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVM 566 (642)
Q Consensus 489 ~~~spdG~~l~-~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~ 566 (642)
+.++.|+.... +...... +..++..+....+ ....++...+.. ..-+.++.+.++++|.+.....
T Consensus 345 ~~~~~d~~~~~~~~~~~~~----~~~hi~~~~~~~~~~~~~lt~g~w~v--------~~i~~~~~~~~~i~f~~~~~~~- 411 (755)
T KOG2100|consen 345 PVFSSDGSSYLKVDSVSDG----GYNHIAYLKLSNGSEPRMLTSGNWEV--------TSILGYDKDSNRIYFDAYEEDP- 411 (755)
T ss_pred ceEeecCCceeEEEeeccC----CEEEEEEEEcCCCCccccccccceEE--------EEeccccCCCceEEEEecCCCC-
Confidence 56888874444 4443332 2677777777666 555555533322 1234566899999999877533
Q ss_pred cCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCC----CCCCcEEecCCceEEeecCCC
Q 039497 567 AEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGY----ENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 567 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~----~~~~~~~s~dg~~~~~~~~~~ 621 (642)
...+||.+++.......++-... ...+..+++..++++..-...
T Consensus 412 -----------~~~~ly~i~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~gP 459 (755)
T KOG2100|consen 412 -----------SERHLYSISLGSGTVESLTCSLITGPCTYLSVSFSKSAKYYVLSCSGP 459 (755)
T ss_pred -----------CceEEEEEEccccccccccccCCCCcceEEEEecCCcccEEEEEccCC
Confidence 24599999999888777776543 334666777778776655444
No 292
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.73 E-value=0.011 Score=58.85 Aligned_cols=172 Identities=9% Similarity=0.053 Sum_probs=108.9
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecC
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD 413 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 413 (642)
...|-...+++|. ..+..+|+||-.|.+.-.+.....+..+.|-|- .+|+.+. ...+.+...++..
T Consensus 175 Dv~~LHneq~~AV----AQK~y~yvYD~~GtElHClk~~~~v~rLeFLPy-HfLL~~~------~~~G~L~Y~DVS~--- 240 (545)
T KOG1272|consen 175 DVTFLHNEQFFAV----AQKKYVYVYDNNGTELHCLKRHIRVARLEFLPY-HFLLVAA------SEAGFLKYQDVST--- 240 (545)
T ss_pred hhhhhcchHHHHh----hhhceEEEecCCCcEEeehhhcCchhhhcccch-hheeeec------ccCCceEEEeech---
Confidence 3355555566666 335789999998888777766667778888885 3444443 2356666667765
Q ss_pred CCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEec
Q 039497 414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493 (642)
Q Consensus 414 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~sp 493 (642)
|+ .+..+.... +....+.-.|-+ .|+-... ....+-+|.....+. +..|..+.+.+.++++.+
T Consensus 241 -----Gk-----lVa~~~t~~-G~~~vm~qNP~N-aVih~Gh--snGtVSlWSP~skeP---LvKiLcH~g~V~siAv~~ 303 (545)
T KOG1272|consen 241 -----GK-----LVASIRTGA-GRTDVMKQNPYN-AVIHLGH--SNGTVSLWSPNSKEP---LVKILCHRGPVSSIAVDR 303 (545)
T ss_pred -----hh-----hhHHHHccC-CccchhhcCCcc-ceEEEcC--CCceEEecCCCCcch---HHHHHhcCCCcceEEECC
Confidence 33 333333333 334444445543 2333433 344788888887776 777777888999999999
Q ss_pred CCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCC
Q 039497 494 KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADG 553 (642)
Q Consensus 494 dG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg 553 (642)
+|++++.++.+.. +.+||+..-. +..+... .. ....++||.-|
T Consensus 304 ~G~YMaTtG~Dr~--------~kIWDlR~~~-ql~t~~t-p~-------~a~~ls~Sqkg 346 (545)
T KOG1272|consen 304 GGRYMATTGLDRK--------VKIWDLRNFY-QLHTYRT-PH-------PASNLSLSQKG 346 (545)
T ss_pred CCcEEeecccccc--------eeEeeecccc-ccceeec-CC-------Ccccccccccc
Confidence 9999998887764 8999997543 2122111 11 34667888666
No 293
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.66 E-value=1 Score=46.77 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=28.6
Q ss_pred eEEEEEecCCCceeEeecCC---CcceEeeCCeEEEEEecCCCceEEEEEecCCCc
Q 039497 174 DIVVFQESDPNKRVIVCERG---GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENL 226 (642)
Q Consensus 174 ~l~~~~~~~g~~~~l~~~~~---~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~ 226 (642)
.|+.+|.++|+..--....+ ..|... ++.+++.. .+| .|+.+|..+|+
T Consensus 131 ~l~ald~~tG~~~W~~~~~~~~~ssP~v~-~~~v~v~~--~~g--~l~ald~~tG~ 181 (394)
T PRK11138 131 QVYALNAEDGEVAWQTKVAGEALSRPVVS-DGLVLVHT--SNG--MLQALNESDGA 181 (394)
T ss_pred EEEEEECCCCCCcccccCCCceecCCEEE-CCEEEEEC--CCC--EEEEEEccCCC
Confidence 68889988887543332222 234333 45555543 234 78999998884
No 294
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.64 E-value=0.18 Score=51.79 Aligned_cols=168 Identities=14% Similarity=0.153 Sum_probs=91.0
Q ss_pred CccCcEECCCCCeEEEEeC---------CCCceeEEEEECCC--CccccceeeCCCCCCcccceeEecCCCEEEEEecCC
Q 039497 437 NNAFPSCSPDGKFLVFRSG---------RSGHKNLFVLDAVN--GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH 505 (642)
Q Consensus 437 ~~~~~~~SpDg~~l~~~~~---------~~g~~~l~~~d~~~--g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~ 505 (642)
....++|.++|+.++.... ......|++++-.+ |+. .+.+.+.........+.+.++| |+++...
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~-d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~- 90 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKY-DKSNVFAEELSMVTGLAVAVGG--VYVATPP- 90 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCc-ceeEEeecCCCCccceeEecCC--EEEeCCC-
Confidence 3456789999985544321 11122787776542 432 1123444433345678899988 5555432
Q ss_pred CCCCCCceeEEEE-eCCCC-----ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCc--ccCCC-CCCCCC
Q 039497 506 NPDNVEAFSLYVI-KPDGS-----GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV--MAEPV-SWPNQF 576 (642)
Q Consensus 506 ~~~~~~~~~l~~~-d~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~--~~~~~-~~~~~~ 576 (642)
.|+++ |.++. +.+.+.. +....+.........+.|.|||+ ||++....+. ...+. +.....
T Consensus 91 --------~i~~~~d~~gdg~ad~~~~~l~~-~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~ 160 (367)
T TIGR02604 91 --------DILFLRDKDGDDKADGEREVLLS-GFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQ 160 (367)
T ss_pred --------eEEEEeCCCCCCCCCCccEEEEE-ccCCCCCcccccccCceECCCCC-EEEecccCCCceeccCCCccCccc
Confidence 27766 44331 3333432 11110000001356789999996 6665442211 00000 000011
Q ss_pred CCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeec
Q 039497 577 QPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKL 618 (642)
Q Consensus 577 ~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~ 618 (642)
...+.|++++.++++...+.........++|+++|++|++..
T Consensus 161 ~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 161 GLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 123589999999988877776555567899999999987753
No 295
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=96.61 E-value=0.21 Score=51.81 Aligned_cols=173 Identities=17% Similarity=0.147 Sum_probs=88.9
Q ss_pred CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC----C-CCCcccceeEecCC------CEEEEEecC
Q 039497 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT----D-GPWIDTMPSWSPKG------DLIAFSSNR 504 (642)
Q Consensus 436 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~----~-~~~~~~~~~~spdG------~~l~~~~~~ 504 (642)
...+.++|.|||+.|+... .. ..|++++..++.. ..+..+. . .......++++||= ++||+....
T Consensus 30 ~~Pw~maflPDG~llVtER-~~--G~I~~v~~~~~~~-~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~ 105 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTER-AT--GKILRVNPETGEV-KVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTY 105 (454)
T ss_pred CCceEEEEcCCCeEEEEEe-cC--CEEEEEeCCCCce-eeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEec
Confidence 4566789999996554332 12 3788888765542 0011111 1 22334566888763 456555432
Q ss_pred CCCCC--CCceeEEEEeCCCC-----ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcc----------c
Q 039497 505 HNPDN--VEAFSLYVIKPDGS-----GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVM----------A 567 (642)
Q Consensus 505 ~~~~~--~~~~~l~~~d~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~----------~ 567 (642)
..... .....|.++.++.. ..+.|....... . ...-..+.|.|||+ ||++..+.+.. .
T Consensus 106 ~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~-~---~H~GgrI~FgPDG~-LYVs~GD~g~~~~~n~~~~~~a 180 (454)
T TIGR03606 106 KNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAG-N---DHNGGRLVFGPDGK-IYYTIGEQGRNQGANFFLPNQA 180 (454)
T ss_pred cCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCC-C---CcCCceEEECCCCc-EEEEECCCCCCCcccccCcchh
Confidence 21100 02456888776522 122332211000 0 01235789999997 77766554321 0
Q ss_pred CCCCCC------CCCCCCCcEEEEEcCCCce-----------eeccCCCCCCCCcEEecCCceEEee
Q 039497 568 EPVSWP------NQFQPYGDLYVVKLDGSGL-----------RRLTWNGYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 568 ~~~~~~------~~~~~~~~l~~~~~~~~~~-----------~~lt~~~~~~~~~~~s~dg~~~~~~ 617 (642)
|..+.. ..-...+.|.+++.++..+ ...+..-.+...++|.|+|+++++.
T Consensus 181 Q~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~Lw~~e 247 (454)
T TIGR03606 181 QHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGTLYASE 247 (454)
T ss_pred ccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCCEEEEe
Confidence 100000 0112356899999887532 1222222345688999999988765
No 296
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.57 E-value=0.71 Score=48.20 Aligned_cols=146 Identities=16% Similarity=0.203 Sum_probs=90.1
Q ss_pred CceeEEEEECCCCCeeEEee---cCCceeeeeecC-CCEEEEEEcCCCcccCCC--eEEEEEEEeecCCCCCCCCCcccc
Q 039497 352 LNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPT-EKHVIYTSTGPIFQSERA--TVQIARVSFQLDPSDDNNREEIPC 425 (642)
Q Consensus 352 ~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spd-g~~l~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~ 425 (642)
.+.+|.++...+++...+.. ......+.||-. ...+..+... .-..+.. ...+|.+.. + +-+ .-
T Consensus 182 draNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s-~s~~g~~~~d~ciYE~~r--~------klq-rv 251 (545)
T PF11768_consen 182 DRANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQS-ISVKGEPSADSCIYECSR--N------KLQ-RV 251 (545)
T ss_pred hhccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEe-cCCCCCceeEEEEEEeec--C------cee-EE
Confidence 45688888888887666654 556677888874 4444444321 1111222 233444433 1 100 00
Q ss_pred ceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCC
Q 039497 426 DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH 505 (642)
Q Consensus 426 ~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~ 505 (642)
....+.-. ..+...+++|+.++++..-.+ ..|.+||...+. ...+........++|+|+|..+++.+..+
T Consensus 252 svtsipL~--s~v~~ca~sp~E~kLvlGC~D---gSiiLyD~~~~~-----t~~~ka~~~P~~iaWHp~gai~~V~s~qG 321 (545)
T PF11768_consen 252 SVTSIPLP--SQVICCARSPSEDKLVLGCED---GSIILYDTTRGV-----TLLAKAEFIPTLIAWHPDGAIFVVGSEQG 321 (545)
T ss_pred EEEEEecC--CcceEEecCcccceEEEEecC---CeEEEEEcCCCe-----eeeeeecccceEEEEcCCCcEEEEEcCCc
Confidence 11122222 356677999999999887743 379999987654 55555555667789999999888888776
Q ss_pred CCCCCCceeEEEEeCCCCce
Q 039497 506 NPDNVEAFSLYVIKPDGSGL 525 (642)
Q Consensus 506 ~~~~~~~~~l~~~d~~~~~~ 525 (642)
. |..+|+.-+..
T Consensus 322 e--------lQ~FD~ALspi 333 (545)
T PF11768_consen 322 E--------LQCFDMALSPI 333 (545)
T ss_pred e--------EEEEEeecCcc
Confidence 4 89999865543
No 297
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.41 E-value=0.86 Score=42.92 Aligned_cols=49 Identities=14% Similarity=0.069 Sum_probs=35.8
Q ss_pred ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCC-CCccccceeecCCc
Q 039497 196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPP-GVHCFTPAAFHDGK 255 (642)
Q Consensus 196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~SpdG~ 255 (642)
++-+|||.+.|.. +++..|-++|..+| +.+++.-. +..-+.+.+.|||.
T Consensus 67 vapapdG~VWft~---qg~gaiGhLdP~tG--------ev~~ypLg~Ga~Phgiv~gpdg~ 116 (353)
T COG4257 67 VAPAPDGAVWFTA---QGTGAIGHLDPATG--------EVETYPLGSGASPHGIVVGPDGS 116 (353)
T ss_pred cccCCCCceEEec---CccccceecCCCCC--------ceEEEecCCCCCCceEEECCCCC
Confidence 4667899999887 45558889999999 56666443 54555667788886
No 298
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=96.41 E-value=0.26 Score=52.80 Aligned_cols=179 Identities=11% Similarity=0.034 Sum_probs=107.8
Q ss_pred ceeEEEEECCCCCeeEEeecCCceee-eeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497 353 NAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT 431 (642)
Q Consensus 353 ~~~l~~~d~~~~~~~~l~~~~~~~~~-~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 431 (642)
...+.++|..+++....... ....+ ...-....++-.+ .+..+++|++.. +. ....+.
T Consensus 270 D~t~rvWd~~sg~C~~~l~g-h~stv~~~~~~~~~~~sgs-------~D~tVkVW~v~n--------~~-----~l~l~~ 328 (537)
T KOG0274|consen 270 DKTERVWDCSTGECTHSLQG-HTSSVRCLTIDPFLLVSGS-------RDNTVKVWDVTN--------GA-----CLNLLR 328 (537)
T ss_pred CCcEEeEecCCCcEEEEecC-CCceEEEEEccCceEeecc-------CCceEEEEeccC--------cc-----eEEEec
Confidence 35677778888887666552 22222 2222222233222 378999999976 22 444444
Q ss_pred ccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCC
Q 039497 432 KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVE 511 (642)
Q Consensus 432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~ 511 (642)
.+. ..+..+... +..++..+.+ + .|-+|++.+++. ++.|..+...+..+.+.+. ..++-.+.+..
T Consensus 329 ~h~-~~V~~v~~~--~~~lvsgs~d-~--~v~VW~~~~~~c---l~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~----- 393 (537)
T KOG0274|consen 329 GHT-GPVNCVQLD--EPLLVSGSYD-G--TVKVWDPRTGKC---LKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT----- 393 (537)
T ss_pred ccc-ccEEEEEec--CCEEEEEecC-c--eEEEEEhhhcee---eeeecCCcceEEEEEecCc-ceEEeeeeccc-----
Confidence 343 666666665 6667666643 3 788888889988 8888888887777766654 56666665543
Q ss_pred ceeEEEEeCCCC-ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497 512 AFSLYVIKPDGS-GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590 (642)
Q Consensus 512 ~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 590 (642)
|.+||+.++ +..... .++.. .+ -.+...++.|+-.+.++ .|.+||...+
T Consensus 394 ---IkvWdl~~~~~c~~tl-~~h~~-------~v--~~l~~~~~~Lvs~~aD~-----------------~Ik~WD~~~~ 443 (537)
T KOG0274|consen 394 ---IKVWDLRTKRKCIHTL-QGHTS-------LV--SSLLLRDNFLVSSSADG-----------------TIKLWDAEEG 443 (537)
T ss_pred ---eEeecCCchhhhhhhh-cCCcc-------cc--cccccccceeEeccccc-----------------cEEEeecccC
Confidence 999999887 332221 12222 12 33455667676555543 6777787776
Q ss_pred ceeeccC
Q 039497 591 GLRRLTW 597 (642)
Q Consensus 591 ~~~~lt~ 597 (642)
+..+...
T Consensus 444 ~~~~~~~ 450 (537)
T KOG0274|consen 444 ECLRTLE 450 (537)
T ss_pred ceeeeec
Confidence 6444443
No 299
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=96.40 E-value=0.78 Score=42.22 Aligned_cols=129 Identities=12% Similarity=0.085 Sum_probs=76.7
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeee-ecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSW-SPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~-spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
.+...|..+.|+|.. +...+|.+|+++++.++... ...++.++- +.+++ |+... +++.+++|+..+
T Consensus 119 am~ldP~enSi~~Ag---GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q-ilsG~-------EDGtvRvWd~kt 187 (325)
T KOG0649|consen 119 AMWLDPSENSILFAG---GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ-ILSGA-------EDGTVRVWDTKT 187 (325)
T ss_pred eeEeccCCCcEEEec---CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc-eeecC-------CCccEEEEeccc
Confidence 445678888888864 56899999999999877765 344555554 33333 44333 489999999977
Q ss_pred ecCCCCCCCCCccccceEEccccCCCCccCcEE-------CCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC
Q 039497 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSC-------SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP 483 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~ 483 (642)
.+ ..+.|..-.......|.| .-|..|++.. |...+-+|.+...+. +.+..-+
T Consensus 188 --------~k-----~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCG----gGp~lslwhLrsse~----t~vfpip 246 (325)
T KOG0649|consen 188 --------QK-----HVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCG----GGPKLSLWHLRSSES----TCVFPIP 246 (325)
T ss_pred --------cc-----eeEEeccccChhhcCcccCceeEEEeccCceEEec----CCCceeEEeccCCCc----eEEEecc
Confidence 22 333332221011111212 1233344332 445788888887664 6666556
Q ss_pred CcccceeEecC
Q 039497 484 WIDTMPSWSPK 494 (642)
Q Consensus 484 ~~~~~~~~spd 494 (642)
..+..+.|-.|
T Consensus 247 a~v~~v~F~~d 257 (325)
T KOG0649|consen 247 ARVHLVDFVDD 257 (325)
T ss_pred cceeEeeeecc
Confidence 66777777744
No 300
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.30 E-value=1 Score=42.48 Aligned_cols=157 Identities=16% Similarity=0.081 Sum_probs=93.9
Q ss_pred cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412 (642)
Q Consensus 335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (642)
.+-+|||. +.|.. ++...|-.+|..+++..+... ....+.+..-|||..- ++. ...-|.+++.
T Consensus 67 vapapdG~-VWft~--qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~W-itd---------~~~aI~R~dp-- 131 (353)
T COG4257 67 VAPAPDGA-VWFTA--QGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAW-ITD---------TGLAIGRLDP-- 131 (353)
T ss_pred cccCCCCc-eEEec--CccccceecCCCCCceEEEecCCCCCCceEEECCCCCee-Eec---------CcceeEEecC--
Confidence 35588886 66755 456778888999998777665 4556778889998743 333 1224555543
Q ss_pred CCCCCCCCCccccceEEccccC-CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC-CCccccee
Q 039497 413 DPSDDNNREEIPCDVKILTKEE-TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-PWIDTMPS 490 (642)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~-~~~~~~~~ 490 (642)
+ .. ..+.-+|.... ......+.|.++|+ |.|+....-.. ++|..++.. +..... ......+.
T Consensus 132 k-----t~---evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~G~yG---rLdPa~~~i----~vfpaPqG~gpyGi~ 195 (353)
T COG4257 132 K-----TL---EVTRFPLPLEHADANLETAVFDPWGN-LWFTGQIGAYG---RLDPARNVI----SVFPAPQGGGPYGIC 195 (353)
T ss_pred c-----cc---ceEEeecccccCCCcccceeeCCCcc-EEEeeccccce---ecCcccCce----eeeccCCCCCCcceE
Confidence 1 11 11223333221 24556789999984 66766432222 556655542 333322 12345678
Q ss_pred EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530 (642)
Q Consensus 491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 530 (642)
-.|||. ++|++--++. |.++|...+..+.+..
T Consensus 196 atpdGs-vwyaslagna-------iaridp~~~~aev~p~ 227 (353)
T COG4257 196 ATPDGS-VWYASLAGNA-------IARIDPFAGHAEVVPQ 227 (353)
T ss_pred ECCCCc-EEEEeccccc-------eEEcccccCCcceecC
Confidence 899997 6777654432 8888988877666654
No 301
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.21 Score=48.93 Aligned_cols=174 Identities=11% Similarity=0.041 Sum_probs=97.4
Q ss_pred CCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC
Q 039497 400 RATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL 479 (642)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l 479 (642)
.+.+++|.+.. ... ... +...+..+. ....+.-+|--.+|+..........|-+||+...+.....+.+
T Consensus 124 sG~l~~~~~k~--~d~--hss-----~l~~la~g~--g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv 192 (412)
T KOG3881|consen 124 SGNLQVRHDKS--GDL--HSS-----KLIKLATGP--GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV 192 (412)
T ss_pred CCcEEEEeccC--Ccc--ccc-----cceeeecCC--ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC
Confidence 67788887764 100 001 334444433 3334445555556665554433347788888866421111222
Q ss_pred CCCCCc------ccceeEecC--CCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-CCCCCCcccccccceEEc
Q 039497 480 TDGPWI------DTMPSWSPK--GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEGSGDVDRERINHVCFS 550 (642)
Q Consensus 480 ~~~~~~------~~~~~~spd--G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~S 550 (642)
.+..-. ...+.|-|. ...|+..... .++.+||...+. +++.... .+. .+.+....
T Consensus 193 pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~--------hqvR~YDt~~qR-RPV~~fd~~E~-------~is~~~l~ 256 (412)
T KOG3881|consen 193 PNDRLGLRVPVWITDIRFLEGSPNYKFATITRY--------HQVRLYDTRHQR-RPVAQFDFLEN-------PISSTGLT 256 (412)
T ss_pred CCccccceeeeeeccceecCCCCCceEEEEecc--------eeEEEecCcccC-cceeEeccccC-------cceeeeec
Confidence 222222 233455544 3444444432 358999987543 3333322 232 56788999
Q ss_pred CCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeec--cCCCCCCCCcEEecCCceEEee
Q 039497 551 ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL--TWNGYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 551 ~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l--t~~~~~~~~~~~s~dg~~~~~~ 617 (642)
|+|+.||+....+ +|..+|+.++.+--- -.-.+.+.++.-+|..++++++
T Consensus 257 p~gn~Iy~gn~~g-----------------~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~ 308 (412)
T KOG3881|consen 257 PSGNFIYTGNTKG-----------------QLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASC 308 (412)
T ss_pred CCCcEEEEecccc-----------------hhheecccCceeeccccCCccCCcceEEEcCCCceEEee
Confidence 9999987776543 888999888764322 2334667788888888888764
No 302
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.23 E-value=0.2 Score=51.34 Aligned_cols=121 Identities=12% Similarity=0.202 Sum_probs=73.0
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeeecC-CCEEEEEEcCCCcccCCCeEEEEEE
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPT-EKHVIYTSTGPIFQSERATVQIARV 408 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~l~~~ 408 (642)
..+.|+.||..|+-.++ ..+|-++|.-..+...... ...+.++.|-|- ++.++... .++..++++++
T Consensus 54 N~LeWn~dG~lL~SGSD---D~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sg------AgDk~i~lfdl 124 (758)
T KOG1310|consen 54 NCLEWNADGELLASGSD---DTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSG------AGDKLIKLFDL 124 (758)
T ss_pred cceeecCCCCEEeecCC---cceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEec------cCcceEEEEec
Confidence 46799999998877544 4677788877555444444 456888899884 55666665 34788899998
Q ss_pred EeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC
Q 039497 409 SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV 468 (642)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~ 468 (642)
+..+.+..+.+-.+ ......-+. ..+..++.-|++-..++....+| .|.-+|+.
T Consensus 125 ~~~~~~~~d~~~~~---~~~~~~cht-~rVKria~~p~~PhtfwsasEDG--tirQyDiR 178 (758)
T KOG1310|consen 125 DSSKEGGMDHGMEE---TTRCWSCHT-DRVKRIATAPNGPHTFWSASEDG--TIRQYDIR 178 (758)
T ss_pred ccccccccccCccc---hhhhhhhhh-hhhhheecCCCCCceEEEecCCc--ceeeeccc
Confidence 75322222111110 111111222 45566777788855555555444 56667765
No 303
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=96.19 E-value=0.87 Score=48.20 Aligned_cols=186 Identities=11% Similarity=0.043 Sum_probs=99.3
Q ss_pred ceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEe------ecCCCCcccCCeecCCCCEEEEEEeecCCCCC
Q 039497 235 PTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL------TLNPNFHHYNPFVSANSEFIGYHRFRGESTEG 308 (642)
Q Consensus 235 ~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~ 308 (642)
...+..|...+-.++.-.++. |+..+. ..++.+|-. ..+++..+.....-|++ .++.-+.+..
T Consensus 94 ~~~LkgH~snVC~ls~~~~~~-~iSgSW-----D~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKt---- 162 (745)
T KOG0301|consen 94 LYTLKGHKSNVCSLSIGEDGT-LISGSW-----DSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSADKT---- 162 (745)
T ss_pred hhhhhccccceeeeecCCcCc-eEeccc-----ccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccCcce----
Confidence 345566666665555555665 555333 336677766 23444445444445555 2222111111
Q ss_pred CcccceEeeccCCCceeEEeeeC--CCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCC
Q 039497 309 QSTIPHLEPVASPVKELRMLRLN--GSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEK 385 (642)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~ 385 (642)
..+|-. +..... +.... .+..++-+++..+-. ++.+.|.++++++........ ...++++...+++.
T Consensus 163 --IklWk~--~~~l~t--f~gHtD~VRgL~vl~~~~flSc----sNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~ 232 (745)
T KOG0301|consen 163 --IKLWKG--GTLLKT--FSGHTDCVRGLAVLDDSHFLSC----SNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDG 232 (745)
T ss_pred --eeeccC--Cchhhh--hccchhheeeeEEecCCCeEee----cCCceEEEEeccCceeeeeeccceEEEEEEecCCCC
Confidence 222211 111111 11111 145566677665544 445788888986665444332 44566777667777
Q ss_pred EEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEE
Q 039497 386 HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVL 465 (642)
Q Consensus 386 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~ 465 (642)
.++.+. ++..++||.... ..+.|+-+. ..++...+-++|..++-.++ |.-.||..
T Consensus 233 ~Ivs~g-------EDrtlriW~~~e---------------~~q~I~lPt-tsiWsa~~L~NgDIvvg~SD--G~VrVfT~ 287 (745)
T KOG0301|consen 233 LIVSTG-------EDRTLRIWKKDE---------------CVQVITLPT-TSIWSAKVLLNGDIVVGGSD--GRVRVFTV 287 (745)
T ss_pred eEEEec-------CCceEEEeecCc---------------eEEEEecCc-cceEEEEEeeCCCEEEeccC--ceEEEEEe
Confidence 666554 488999999754 556665554 56777888888875554432 44344444
Q ss_pred E
Q 039497 466 D 466 (642)
Q Consensus 466 d 466 (642)
+
T Consensus 288 ~ 288 (745)
T KOG0301|consen 288 D 288 (745)
T ss_pred c
Confidence 3
No 304
>PRK13614 lipoprotein LpqB; Provisional
Probab=96.17 E-value=0.43 Score=51.22 Aligned_cols=170 Identities=14% Similarity=0.110 Sum_probs=99.9
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (642)
..+..|+||+.+++... ....+++... ++..+.+........+.|.++| .+..+.. ....++..+..
T Consensus 346 ~s~avS~~g~~~A~~~~--~~~~l~~~~~-g~~~~~~~~g~~Lt~PS~d~~g-~vWtv~~-------g~~~~vv~~~~-- 412 (573)
T PRK13614 346 ASPAESPVSQTVAFLNG--SRTTLYTVSP-GQPARALTSGSTLTRPSFSPQD-WVWTAGP-------GGNGRIVAYRP-- 412 (573)
T ss_pred cceeecCCCceEEEecC--CCcEEEEecC-CCcceeeecCCCccCCcccCCC-CEEEeeC-------CCCceEEEEec--
Confidence 45689999999999753 2346776665 4454555556678899999998 6766553 22224444443
Q ss_pred CCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEEC---CCCccccceeeCCCC-----CC
Q 039497 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA---VNGEFNGDIRQLTDG-----PW 484 (642)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~---~~g~~~~~~~~l~~~-----~~ 484 (642)
++.- ...................+..+.+|+||-+++.....+|..+|++--+ ..|+ .+.|+.. ..
T Consensus 413 ~g~~--~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~----P~~L~~~~~~~~~~ 486 (573)
T PRK13614 413 TGVA--EGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGT----PRELTAPITLAADS 486 (573)
T ss_pred CCCc--ccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCC----eEEccCceecccCC
Confidence 2110 0000000011122222124788999999999999886667666775333 3454 2444332 23
Q ss_pred cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE
Q 039497 485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526 (642)
Q Consensus 485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 526 (642)
......|..++..++...... ....++++.+.++..+
T Consensus 487 ~~~sl~W~~~~sl~V~~~~~~-----~~~~~~~v~v~~g~~~ 523 (573)
T PRK13614 487 DADTGAWVGDSTVVVTKASAT-----SNVVPELLSVDAGQPQ 523 (573)
T ss_pred CcceeEEcCCCEEEEEeccCC-----CcceEEEEEeCCCCcc
Confidence 556789998888655554332 4556888888665544
No 305
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.13 E-value=0.35 Score=48.23 Aligned_cols=148 Identities=15% Similarity=0.148 Sum_probs=93.6
Q ss_pred eeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeC
Q 039497 376 FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSG 455 (642)
Q Consensus 376 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~ 455 (642)
..+.|.-.-+.|++.. ..+.++.+|+++. +. ..+.++.+. ..+..+.|.|..-.++..+.
T Consensus 247 l~Ls~n~~~~nVLaSg------saD~TV~lWD~~~--------g~-----p~~s~~~~~-k~Vq~l~wh~~~p~~LLsGs 306 (463)
T KOG0270|consen 247 LALSWNRNFRNVLASG------SADKTVKLWDVDT--------GK-----PKSSITHHG-KKVQTLEWHPYEPSVLLSGS 306 (463)
T ss_pred HHHHhccccceeEEec------CCCceEEEEEcCC--------CC-----cceehhhcC-CceeEEEecCCCceEEEecc
Confidence 3567777777777766 3488999999987 33 455555555 78889999998877776665
Q ss_pred CCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCC
Q 039497 456 RSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEG 535 (642)
Q Consensus 456 ~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 535 (642)
.++ ++.+.|...-.. .-.--.-.+.+..++|.|-....++.+.+.+ .||-+|+........+...+.+
T Consensus 307 ~D~--~V~l~D~R~~~~---s~~~wk~~g~VEkv~w~~~se~~f~~~tddG-------~v~~~D~R~~~~~vwt~~AHd~ 374 (463)
T KOG0270|consen 307 YDG--TVALKDCRDPSN---SGKEWKFDGEVEKVAWDPHSENSFFVSTDDG-------TVYYFDIRNPGKPVWTLKAHDD 374 (463)
T ss_pred ccc--eEEeeeccCccc---cCceEEeccceEEEEecCCCceeEEEecCCc-------eEEeeecCCCCCceeEEEeccC
Confidence 444 677777652110 0111111234567889988877777765543 2888888765332333334444
Q ss_pred CCCcccccccceEEcCCCCEEEEEEec
Q 039497 536 SGDVDRERINHVCFSADGEWLLFTANL 562 (642)
Q Consensus 536 ~~~~~~~~~~~~~~S~Dg~~l~~~~~~ 562 (642)
.+..+.+++.-..++.+...
T Consensus 375 -------~ISgl~~n~~~p~~l~t~s~ 394 (463)
T KOG0270|consen 375 -------EISGLSVNIQTPGLLSTAST 394 (463)
T ss_pred -------CcceEEecCCCCcceeeccc
Confidence 56778888777766666443
No 306
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=96.12 E-value=0.54 Score=43.90 Aligned_cols=119 Identities=18% Similarity=0.082 Sum_probs=76.5
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCC--eeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK--RWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR 407 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~--~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~ 407 (642)
....+|+|+++++.+.+ ..+|+++.++... ...+.. ...-....||.....+|++.. ++...||+
T Consensus 162 ns~~~snd~~~~~~Vgd---s~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Q-------dg~~~I~D 231 (344)
T KOG4532|consen 162 NSLHYSNDPSWGSSVGD---SRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQ-------DGTCAIYD 231 (344)
T ss_pred eeeEEcCCCceEEEecC---CCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEec-------CCcEEEEE
Confidence 35689999999998865 3677777665443 333222 345567789988888888764 78999999
Q ss_pred EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCe-EEEEeCCCCceeEEEEECCCCcc
Q 039497 408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF-LVFRSGRSGHKNLFVLDAVNGEF 472 (642)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~-l~~~~~~~g~~~l~~~d~~~g~~ 472 (642)
+.. . +.....+...-..+. +......|||-|-. |+|.+. +-..+.+.|+.++..
T Consensus 232 VR~--~------~tpm~~~sstrp~hn-Ga~R~c~Fsl~g~lDLLf~sE--hfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 232 VRN--M------ATPMAEISSTRPHHN-GAFRVCRFSLYGLLDLLFISE--HFSRVHVVDTRNYVN 286 (344)
T ss_pred ecc--c------ccchhhhcccCCCCC-CceEEEEecCCCcceEEEEec--CcceEEEEEcccCce
Confidence 976 3 211000111112222 66777889986632 556654 455888999988875
No 307
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.10 E-value=0.23 Score=51.82 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=65.9
Q ss_pred CCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCC
Q 039497 341 GGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR 420 (642)
Q Consensus 341 g~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 420 (642)
|..|..... ..|.++|.++++...-..-..+..+.||++|+.+++.+ ...+.|+..+...-......|
T Consensus 117 G~LL~~~~~----~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t--------~~~i~il~~~~~~~~~~~~~g 184 (443)
T PF04053_consen 117 GNLLGVKSS----DFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVT--------KDSIYILKYNLEAVAAIPEEG 184 (443)
T ss_dssp SSSEEEEET----TEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE---------S-SEEEEEE-HHHHHHBTTTB
T ss_pred CcEEEEECC----CCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEe--------CCeEEEEEecchhcccccccC
Confidence 775655442 36999999988765554433478999999999999998 557777777651000000011
Q ss_pred CccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEE
Q 039497 421 EEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500 (642)
Q Consensus 421 ~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~ 500 (642)
-+ .....+..-. ..+.+..|--| -++|++.. +|.- +-.|+. ..|........-..+.|..+.|++
T Consensus 185 ~e--~~f~~~~E~~-~~IkSg~W~~d--~fiYtT~~----~lkY--l~~Ge~----~~i~~ld~~~yllgy~~~~~~ly~ 249 (443)
T PF04053_consen 185 VE--DAFELIHEIS-ERIKSGCWVED--CFIYTTSN----HLKY--LVNGET----GIIAHLDKPLYLLGYLPKENRLYL 249 (443)
T ss_dssp -G--GGEEEEEEE--S--SEEEEETT--EEEEE-TT----EEEE--EETTEE----EEEEE-SS--EEEEEETTTTEEEE
T ss_pred ch--hceEEEEEec-ceeEEEEEEcC--EEEEEcCC----eEEE--EEcCCc----ceEEEcCCceEEEEEEccCCEEEE
Confidence 11 0122333213 56777888655 77777642 5533 223552 333222222333466666666666
Q ss_pred EecCC
Q 039497 501 SSNRH 505 (642)
Q Consensus 501 ~~~~~ 505 (642)
...+.
T Consensus 250 ~Dr~~ 254 (443)
T PF04053_consen 250 IDRDG 254 (443)
T ss_dssp E-TT-
T ss_pred EECCC
Confidence 66544
No 308
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=96.08 E-value=0.35 Score=46.68 Aligned_cols=178 Identities=11% Similarity=0.106 Sum_probs=95.2
Q ss_pred ceeEEEEECCCCCeeEEee--cCCceeeeeecC-CCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE
Q 039497 353 NAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPT-EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI 429 (642)
Q Consensus 353 ~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 429 (642)
++.|.++|..+++..+... ...+..+.|+.+ +-..+++. ..++.+++|++.. . ++ ..+.
T Consensus 49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~------ssDG~Vr~wD~Rs--~------~e----~a~~ 110 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISC------SSDGTVRLWDIRS--Q------AE----SARI 110 (376)
T ss_pred CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEe------ccCCeEEEEEeec--c------hh----hhhe
Confidence 3567777877765444433 455667777663 44444444 2378999999987 2 21 2222
Q ss_pred ccccCC-CCccCcEECCCCCeEEEEeCC-CCceeEEEEECCCCccccceeeC-CCCCCcccceeEecCCCEEEEEecCCC
Q 039497 430 LTKEET-GNNAFPSCSPDGKFLVFRSGR-SGHKNLFVLDAVNGEFNGDIRQL-TDGPWIDTMPSWSPKGDLIAFSSNRHN 506 (642)
Q Consensus 430 l~~~~~-~~~~~~~~SpDg~~l~~~~~~-~g~~~l~~~d~~~g~~~~~~~~l-~~~~~~~~~~~~spdG~~l~~~~~~~~ 506 (642)
...... .....+...-.++.++..... .....|++||....+. .+..+ ..+...++.+.|+|...-++.++.-.+
T Consensus 111 ~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq--~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG 188 (376)
T KOG1188|consen 111 SWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ--LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDG 188 (376)
T ss_pred eccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccc--hhhhhhhhccCcceeEEecCCCCCeEEeecccc
Confidence 222210 011112222123334333322 2344889999875431 02333 345567889999997755555554432
Q ss_pred CCCCCceeEEEEeCCCCceE--EeeecCCCCCCCcccccccceEEcCCC-CEEEEEEecCC
Q 039497 507 PDNVEAFSLYVIKPDGSGLR--RIHVAGPEGSGDVDRERINHVCFSADG-EWLLFTANLGA 564 (642)
Q Consensus 507 ~~~~~~~~l~~~d~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~S~Dg-~~l~~~~~~~~ 564 (642)
- +-++|++..... .++..+... .+..+.|..++ ++|+..+..++
T Consensus 189 L-------vnlfD~~~d~EeDaL~~viN~~s-------SI~~igw~~~~ykrI~clTH~Et 235 (376)
T KOG1188|consen 189 L-------VNLFDTKKDNEEDALLHVINHGS-------SIHLIGWLSKKYKRIMCLTHMET 235 (376)
T ss_pred e-------EEeeecCCCcchhhHHHhhcccc-------eeeeeeeecCCcceEEEEEccCc
Confidence 1 667787654322 122222232 45678999998 44666665543
No 309
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.07 E-value=2.8 Score=45.35 Aligned_cols=97 Identities=15% Similarity=0.147 Sum_probs=66.6
Q ss_pred ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCC-CCCCceeEEEEeCCCCceEEeeecCCCCCC
Q 039497 459 HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP-DNVEAFSLYVIKPDGSGLRRIHVAGPEGSG 537 (642)
Q Consensus 459 ~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~-~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 537 (642)
.+.|.++|+.++.. .+.+.-+...+..+.|--..+.+-|..+..+. -....++|.+.|+.+|..+.+... .
T Consensus 446 sGTV~vvdvst~~v---~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l--~--- 517 (1062)
T KOG1912|consen 446 SGTVDVVDVSTNAV---AASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGL--Q--- 517 (1062)
T ss_pred CceEEEEEecchhh---hhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccC--C---
Confidence 34788899988875 45566666778888998777777776654321 122467899999998876655411 1
Q ss_pred CcccccccceEEcCCCCEEEEEEecC
Q 039497 538 DVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 538 ~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
.+++..+..+..|.-|++|++.-.+.
T Consensus 518 ~~despI~~irvS~~~~yLai~Fr~~ 543 (1062)
T KOG1912|consen 518 KPDESPIRAIRVSSSGRYLAILFRRE 543 (1062)
T ss_pred CCCcCcceeeeecccCceEEEEeccc
Confidence 12223677889999999998877654
No 310
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.03 E-value=0.15 Score=53.87 Aligned_cols=173 Identities=14% Similarity=0.169 Sum_probs=88.4
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (642)
..+|..||.+|+.+-.. +.|.+=.++|....--.. .....++.||+|.+.++|... .+..++|+....+
T Consensus 120 SmsWn~dG~kIcIvYeD---GavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~a-------nge~hlydnqgnF 189 (1189)
T KOG2041|consen 120 SMSWNLDGTKICIVYED---GAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKA-------NGETHLYDNQGNF 189 (1189)
T ss_pred EEEEcCCCcEEEEEEcc---CCEEEEeeccceecchhcchheccceeecccHHHHHhhhc-------CCcEEEecccccH
Confidence 56899999999886542 345555555654322111 233457899999998887753 5667777653311
Q ss_pred CCCCCC------CCCccccceEEccccCCCCccCcE-ECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCc
Q 039497 413 DPSDDN------NREEIPCDVKILTKEETGNNAFPS-CSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWI 485 (642)
Q Consensus 413 ~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~-~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~ 485 (642)
.-+... +| -...-..++.... ....... .-||--.++... .+|.-+|.+-.-+ .+ +..+..+ ..
T Consensus 190 ~~Kl~~~c~Vn~tg-~~s~~~~kia~i~-w~~g~~~~v~pdrP~lavcy-~nGr~QiMR~eND-~~----Pvv~dtg-m~ 260 (1189)
T KOG2041|consen 190 ERKLEKDCEVNGTG-IFSNFPTKIAEIE-WNTGPYQPVPPDRPRLAVCY-ANGRMQIMRSEND-PE----PVVVDTG-MK 260 (1189)
T ss_pred HHhhhhceEEeeee-eecCCCcccccee-eccCccccCCCCCCEEEEEE-cCceehhhhhcCC-CC----CeEEecc-cE
Confidence 100000 00 0000111121111 1111112 234665665544 3466666654433 33 2333333 56
Q ss_pred ccceeEecCCCEEEEEecCCCCCCC-CceeEEEEeCCCCce
Q 039497 486 DTMPSWSPKGDLIAFSSNRHNPDNV-EAFSLYVIKPDGSGL 525 (642)
Q Consensus 486 ~~~~~~spdG~~l~~~~~~~~~~~~-~~~~l~~~d~~~~~~ 525 (642)
+....|+++|..|++.+.......+ ..+.|..+..-|.-.
T Consensus 261 ~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~ 301 (1189)
T KOG2041|consen 261 IVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIV 301 (1189)
T ss_pred eecceecCCCcEEEEccCcccccCccccceEEEeccchhhe
Confidence 6778999999999988765432111 233555555544333
No 311
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=95.96 E-value=0.62 Score=46.27 Aligned_cols=150 Identities=13% Similarity=0.058 Sum_probs=95.8
Q ss_pred CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC-----cccceeEecCCCEEEEEecCCCCC-
Q 039497 435 TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW-----IDTMPSWSPKGDLIAFSSNRHNPD- 508 (642)
Q Consensus 435 ~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~-----~~~~~~~spdG~~l~~~~~~~~~~- 508 (642)
+++...++|...|.-|+++. ...-|+.++.++|+. +.++.... .......+++| .|+|+.....-.
T Consensus 114 CGRPLGl~f~~~ggdL~VaD---AYlGL~~V~p~g~~a----~~l~~~~~G~~~kf~N~ldI~~~g-~vyFTDSSsk~~~ 185 (376)
T KOG1520|consen 114 CGRPLGIRFDKKGGDLYVAD---AYLGLLKVGPEGGLA----ELLADEAEGKPFKFLNDLDIDPEG-VVYFTDSSSKYDR 185 (376)
T ss_pred cCCcceEEeccCCCeEEEEe---cceeeEEECCCCCcc----eeccccccCeeeeecCceeEcCCC-eEEEeccccccch
Confidence 45667789999997777765 566799999987763 55554321 12345677755 466665543210
Q ss_pred ---------CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCC
Q 039497 509 ---------NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPY 579 (642)
Q Consensus 509 ---------~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~ 579 (642)
....-+++.||..++..+.+...-. -...++.|||+..++++..-.
T Consensus 186 rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~---------F~NGlaLS~d~sfvl~~Et~~---------------- 240 (376)
T KOG1520|consen 186 RDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLY---------FPNGLALSPDGSFVLVAETTT---------------- 240 (376)
T ss_pred hheEEeeecCCCccceEEecCcccchhhhhhccc---------ccccccCCCCCCEEEEEeecc----------------
Confidence 1234458888887777666554211 235689999999998886543
Q ss_pred CcEEEEEcCCCce---eeccC-CCCCCCCcEEecCCceEEee
Q 039497 580 GDLYVVKLDGSGL---RRLTW-NGYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 580 ~~l~~~~~~~~~~---~~lt~-~~~~~~~~~~s~dg~~~~~~ 617 (642)
.+|..|=+.+... ..++. -.+....+..+++|.++++.
T Consensus 241 ~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal 282 (376)
T KOG1520|consen 241 ARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVAL 282 (376)
T ss_pred ceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEE
Confidence 2666666666543 33333 34555678888999888765
No 312
>PRK13613 lipoprotein LpqB; Provisional
Probab=95.85 E-value=2.3 Score=46.30 Aligned_cols=169 Identities=11% Similarity=0.024 Sum_probs=93.8
Q ss_pred cccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCc----eeE-EeeeCCCccEEcCCCCEEEEEecCCCcee-E
Q 039497 283 HHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVK----ELR-MLRLNGSFPSFSPDGGLIVFNHDFELNAG-I 356 (642)
Q Consensus 283 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~-l 356 (642)
....++.|+||..+++...++ ..+++..+..... ... +....-..|.|.++| .+..+.......+ |
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~-------~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl 435 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADG-------DSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDRDPADPRLL 435 (599)
T ss_pred CccceEEcCCCceEEEEcCCC-------cEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecCCCCCceEE
Confidence 455788999999888884322 2333333322211 001 111123578899888 4544422122233 5
Q ss_pred EEEECCCCCeeEEee---cC-CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc
Q 039497 357 KIAKSDGSKRWTLIK---DR-TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK 432 (642)
Q Consensus 357 ~~~d~~~~~~~~l~~---~~-~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 432 (642)
+++.- +++...+.. .+ .+..+..|+||-+++++... .+...+++-.+.. +. .|..-......+..
T Consensus 436 ~v~~~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~----~g~~~v~va~V~R--~~----~G~~~l~~~~~l~~ 504 (599)
T PRK13613 436 WLLQG-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEK----DGRRSLQIGRIVR--DA----KAVVSVEEFRSLAP 504 (599)
T ss_pred EEEcC-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEec----CCCcEEEEEEEEe--CC----CCcEEeeccEEecc
Confidence 55553 444443333 33 68899999999999998742 2345666766655 21 12110113333433
Q ss_pred cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCc
Q 039497 433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471 (642)
Q Consensus 433 ~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~ 471 (642)
.- ..+..+.|..++..++......+...+|++++++..
T Consensus 505 ~l-~~v~~~~W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~ 542 (599)
T PRK13613 505 EL-EDVTDMSWAGDSQLVVLGREEGGVQQARYVQVDGST 542 (599)
T ss_pred CC-CccceeEEcCCCEEEEEeccCCCCcceEEEecCCcC
Confidence 33 346788999888755544444456789999998544
No 313
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=1.8 Score=41.42 Aligned_cols=196 Identities=12% Similarity=0.167 Sum_probs=98.8
Q ss_pred CCEEEEEecCCCceeEEEEE---CCC--CCeeEEee----cCCceeeeeecC--CCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497 341 GGLIVFNHDFELNAGIKIAK---SDG--SKRWTLIK----DRTAFYNSWSPT--EKHVIYTSTGPIFQSERATVQIARVS 409 (642)
Q Consensus 341 g~~l~~~~~~~~~~~l~~~d---~~~--~~~~~l~~----~~~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~l~~~~ 409 (642)
|+-|+..+. +....||--. .+. .+....+. ...+.++.|.|- |=.|+.++ .++.++||...
T Consensus 73 GqvvA~cS~-Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~-------aDG~lRIYEA~ 144 (361)
T KOG2445|consen 73 GQVVATCSY-DRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAAS-------ADGILRIYEAP 144 (361)
T ss_pred cceEEEEec-CCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEec-------cCcEEEEEecC
Confidence 565666554 4445555432 122 12222222 556888999985 44455544 37888888763
Q ss_pred eecCCCCCCCCCccccceEEccccC---CCCccCcEECCC---CCeEEEEeCCC----CceeEEEEECCCCccccceeeC
Q 039497 410 FQLDPSDDNNREEIPCDVKILTKEE---TGNNAFPSCSPD---GKFLVFRSGRS----GHKNLFVLDAVNGEFNGDIRQL 479 (642)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~SpD---g~~l~~~~~~~----g~~~l~~~d~~~g~~~~~~~~l 479 (642)
...+- ..-++-.+.+.+...+ ......+.|+|- ...|+..++.. +...||.++-.+.+. ..+..|
T Consensus 145 dp~nL----s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw-~kva~L 219 (361)
T KOG2445|consen 145 DPMNL----SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKW-LKVAEL 219 (361)
T ss_pred Ccccc----ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCccee-eeehhc
Confidence 20000 0000000111111111 023345677753 24566666542 244677766554343 113345
Q ss_pred CCCCCcccceeEecCC-C---EEEEEecCCCCCCCCceeEEEEeCCCCc------------------eEEee-ecCCCCC
Q 039497 480 TDGPWIDTMPSWSPKG-D---LIAFSSNRHNPDNVEAFSLYVIKPDGSG------------------LRRIH-VAGPEGS 536 (642)
Q Consensus 480 ~~~~~~~~~~~~spdG-~---~l~~~~~~~~~~~~~~~~l~~~d~~~~~------------------~~~l~-~~~~~~~ 536 (642)
......+..++|+|+- + .|+.+..++ |+++.+.... .+.+. ..++++
T Consensus 220 ~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg---------v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~- 289 (361)
T KOG2445|consen 220 PDHTDPIRDISWAPNIGRSYHLLAVATKDG---------VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG- 289 (361)
T ss_pred CCCCCcceeeeeccccCCceeeEEEeecCc---------EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-
Confidence 5556677888999963 2 344444443 5666554311 11111 112333
Q ss_pred CCcccccccceEEcCCCCEEEEEEecCCc
Q 039497 537 GDVDRERINHVCFSADGEWLLFTANLGAV 565 (642)
Q Consensus 537 ~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~ 565 (642)
.+..+.|.--|..|.-+..++-.
T Consensus 290 ------~VWrv~wNmtGtiLsStGdDG~V 312 (361)
T KOG2445|consen 290 ------EVWRVRWNMTGTILSSTGDDGCV 312 (361)
T ss_pred ------ceEEEEEeeeeeEEeecCCCcee
Confidence 67889999999877777666543
No 314
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=95.81 E-value=0.29 Score=46.94 Aligned_cols=111 Identities=18% Similarity=0.144 Sum_probs=75.4
Q ss_pred CCccCcEECCCC---CeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCc
Q 039497 436 GNNAFPSCSPDG---KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA 512 (642)
Q Consensus 436 ~~~~~~~~SpDg---~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~ 512 (642)
......+|+-|- .-++.+.. -...|+++|+.+++. ...+..+.+.++.+.+.|+.-.|+.......
T Consensus 90 Esfytcsw~yd~~~~~p~la~~G--~~GvIrVid~~~~~~---~~~~~ghG~sINeik~~p~~~qlvls~SkD~------ 158 (385)
T KOG1034|consen 90 ESFYTCSWSYDSNTGNPFLAAGG--YLGVIRVIDVVSGQC---SKNYRGHGGSINEIKFHPDRPQLVLSASKDH------ 158 (385)
T ss_pred cceEEEEEEecCCCCCeeEEeec--ceeEEEEEecchhhh---ccceeccCccchhhhcCCCCCcEEEEecCCc------
Confidence 344456776553 33444443 234899999998887 6677777788899999998866666655443
Q ss_pred eeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 513 FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 513 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
.|.+|++.+.....+.- +..+ .|..+.++-|++||.+|+-...+-
T Consensus 159 -svRlwnI~~~~Cv~VfG-G~eg----HrdeVLSvD~~~~gd~i~ScGmDh 203 (385)
T KOG1034|consen 159 -SVRLWNIQTDVCVAVFG-GVEG----HRDEVLSVDFSLDGDRIASCGMDH 203 (385)
T ss_pred -eEEEEeccCCeEEEEec-cccc----ccCcEEEEEEcCCCCeeeccCCcc
Confidence 39999998776655542 3332 233678899999999887666553
No 315
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=95.80 E-value=1.7 Score=40.75 Aligned_cols=123 Identities=12% Similarity=0.025 Sum_probs=74.0
Q ss_pred CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE--ccccCCCCccCcEECCCCCeEE
Q 039497 374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI--LTKEETGNNAFPSCSPDGKFLV 451 (642)
Q Consensus 374 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~SpDg~~l~ 451 (642)
...+..+|+|+++++.+.. ..++.+|.++. + ++ .... +.... ..-...+||.....++
T Consensus 160 ~~ns~~~snd~~~~~~Vgd-------s~~Vf~y~id~--~------se----y~~~~~~a~t~-D~gF~~S~s~~~~~FA 219 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGD-------SRRVFRYAIDD--E------SE----YIENIYEAPTS-DHGFYNSFSENDLQFA 219 (344)
T ss_pred ceeeeEEcCCCceEEEecC-------CCcceEEEeCC--c------cc----eeeeeEecccC-CCceeeeeccCcceEE
Confidence 3678899999999988864 67788888876 3 22 2222 22222 2223457888777777
Q ss_pred EEeCCCCceeEEEEECCCCccccceeeCC----CCCCcccceeEecCCCE-EEEEecCCCCCCCCceeEEEEeCCCCceE
Q 039497 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLT----DGPWIDTMPSWSPKGDL-IAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526 (642)
Q Consensus 452 ~~~~~~g~~~l~~~d~~~g~~~~~~~~l~----~~~~~~~~~~~spdG~~-l~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 526 (642)
....+ | .+-+||+..-.. ++..++ .+.+.+..+.||+-|-. |+|.+..- ..+.++|+.+..-.
T Consensus 220 v~~Qd-g--~~~I~DVR~~~t--pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhf-------s~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 220 VVFQD-G--TCAIYDVRNMAT--PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHF-------SRVHVVDTRNYVNH 287 (344)
T ss_pred EEecC-C--cEEEEEeccccc--chhhhcccCCCCCCceEEEEecCCCcceEEEEecCc-------ceEEEEEcccCcee
Confidence 76633 3 566777653221 022222 24566777899987743 45554432 34888999876544
Q ss_pred Ee
Q 039497 527 RI 528 (642)
Q Consensus 527 ~l 528 (642)
++
T Consensus 288 q~ 289 (344)
T KOG4532|consen 288 QV 289 (344)
T ss_pred eE
Confidence 43
No 316
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.75 E-value=2.6 Score=42.54 Aligned_cols=168 Identities=17% Similarity=0.212 Sum_probs=76.1
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--------cCCceeeeeecC---CCEEEEEEcCCCcccCCCe
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--------DRTAFYNSWSPT---EKHVIYTSTGPIFQSERAT 402 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--------~~~~~~~~~spd---g~~l~~~~~~~~~~~~~~~ 402 (642)
.++|.|||+.++. . + ...|++++.++.....+.. ......++++|+ ..+|++.............
T Consensus 6 ~~a~~pdG~l~v~-e-~--~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 6 SMAFLPDGRLLVA-E-R--SGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEETTSCEEEE-E-T--TTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred EEEEeCCCcEEEE-e-C--CceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 4588999975433 2 2 5789998855544233322 334567788884 3455544321100112334
Q ss_pred EEEEEEEeecCCCCCCCCCccccceEEc----cc--cCCCCccCcEECCCCCeEEEEeCCC-----------CceeEEEE
Q 039497 403 VQIARVSFQLDPSDDNNREEIPCDVKIL----TK--EETGNNAFPSCSPDGKFLVFRSGRS-----------GHKNLFVL 465 (642)
Q Consensus 403 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l----~~--~~~~~~~~~~~SpDg~~l~~~~~~~-----------g~~~l~~~ 465 (642)
..|.+... +. +...+. ..+.| .. ........+.|.||| +|+++.... ....|.++
T Consensus 82 ~~v~r~~~--~~----~~~~~~-~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri 153 (331)
T PF07995_consen 82 NRVVRFTL--SD----GDGDLS-SEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRI 153 (331)
T ss_dssp EEEEEEEE--ET----TSCEEE-EEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEE
T ss_pred eeeEEEec--cC----Cccccc-cceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEe
Confidence 45655554 10 100100 11111 11 110123458999999 666654321 13478899
Q ss_pred ECCCCcccc----------ceeeCCCCCCcccceeEecC-CCEEEEEecCCCCCCCCceeEEEEe
Q 039497 466 DAVNGEFNG----------DIRQLTDGPWIDTMPSWSPK-GDLIAFSSNRHNPDNVEAFSLYVIK 519 (642)
Q Consensus 466 d~~~g~~~~----------~~~~l~~~~~~~~~~~~spd-G~~l~~~~~~~~~~~~~~~~l~~~d 519 (642)
+.+ |+.+. ..+....+-.+...++|+|. |+ |+....... ...+|.++.
T Consensus 154 ~~d-G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~-l~~~d~G~~----~~dein~i~ 212 (331)
T PF07995_consen 154 DPD-GSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGR-LWAADNGPD----GWDEINRIE 212 (331)
T ss_dssp ETT-SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTE-EEEEEE-SS----SSEEEEEE-
T ss_pred ccc-CcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCc-EEEEccCCC----CCcEEEEec
Confidence 876 44200 01111222233455699998 65 554443321 235565553
No 317
>PRK13613 lipoprotein LpqB; Provisional
Probab=95.70 E-value=2.4 Score=46.13 Aligned_cols=167 Identities=13% Similarity=0.099 Sum_probs=97.0
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCe-----eEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEE-EE
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR-----WTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQ-IA 406 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~-----~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~-l~ 406 (642)
..++.|++|+.++++.. ....+++-.+.++.. +.+........+.|.++| .+..+.. +...-+ ++
T Consensus 366 ~s~avS~~g~~~A~v~~--~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~------~~~~~~vl~ 436 (599)
T PRK13613 366 RRVAVSRDESRAAGISA--DGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDR------DPADPRLLW 436 (599)
T ss_pred cceEEcCCCceEEEEcC--CCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecC------CCCCceEEE
Confidence 46788999999999863 235777766543332 234445668889999988 5665532 112222 22
Q ss_pred EEEeecCCCCCCCCCccccceEEcc--ccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC---CCcc-ccceeeCC
Q 039497 407 RVSFQLDPSDDNNREEIPCDVKILT--KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV---NGEF-NGDIRQLT 480 (642)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~---~g~~-~~~~~~l~ 480 (642)
.+.. +| ....+. ......+..+.+|+||-+++......+..+|++--+. .|+. ...+..+.
T Consensus 437 v~~~--------~G-----~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~ 503 (599)
T PRK13613 437 LLQG--------DG-----EPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLA 503 (599)
T ss_pred EEcC--------CC-----cEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEec
Confidence 2322 22 122221 1211257889999999999998876666666654432 3321 01122333
Q ss_pred CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE
Q 039497 481 DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526 (642)
Q Consensus 481 ~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 526 (642)
.....+....|..++..++...... +...+|++.+++....
T Consensus 504 ~~l~~v~~~~W~~~~sL~Vlg~~~~-----~~~~v~~v~vdG~~~~ 544 (599)
T PRK13613 504 PELEDVTDMSWAGDSQLVVLGREEG-----GVQQARYVQVDGSTPP 544 (599)
T ss_pred cCCCccceeEEcCCCEEEEEeccCC-----CCcceEEEecCCcCcc
Confidence 3333467789998887554443222 3455899999877654
No 318
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=95.59 E-value=0.39 Score=47.38 Aligned_cols=156 Identities=12% Similarity=0.036 Sum_probs=79.2
Q ss_pred cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
...+++|+.||.... .....++.++......+.+.. ......+.+..+...+..+... .+...+.++.+..
T Consensus 68 ~~~s~~~~llAv~~~-~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dka----gD~~~~di~s~~~- 141 (390)
T KOG3914|consen 68 VLTSDSGRLVAVATS-SKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKA----GDVYSFDILSADS- 141 (390)
T ss_pred cccCCCceEEEEEeC-CCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeec----CCceeeeeecccc-
Confidence 355777776665432 222234444433221122211 3445566666666666665531 1222223333221
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee-CCCCCCccccee
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ-LTDGPWIDTMPS 490 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~-l~~~~~~~~~~~ 490 (642)
+ ..+.+..+- .....++||||+++|+++ ++++...|-.++.. -. +.. ...+...+..++
T Consensus 142 --------~-----~~~~~lGhv-Sml~dVavS~D~~~Iita-DRDEkIRvs~ypa~-f~----IesfclGH~eFVS~is 201 (390)
T KOG3914|consen 142 --------G-----RCEPILGHV-SMLLDVAVSPDDQFIITA-DRDEKIRVSRYPAT-FV----IESFCLGHKEFVSTIS 201 (390)
T ss_pred --------c-----Ccchhhhhh-hhhheeeecCCCCEEEEe-cCCceEEEEecCcc-cc----hhhhccccHhheeeee
Confidence 2 455555555 677889999999877654 56554343333321 11 122 223444566666
Q ss_pred EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce
Q 039497 491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL 525 (642)
Q Consensus 491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~ 525 (642)
.-++ ..|+-.+.++ +|++||..+++.
T Consensus 202 l~~~-~~LlS~sGD~--------tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 202 LTDN-YLLLSGSGDK--------TLRLWDITSGKL 227 (390)
T ss_pred eccC-ceeeecCCCC--------cEEEEecccCCc
Confidence 6644 3344444444 399999987754
No 319
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.47 E-value=3.9 Score=42.62 Aligned_cols=65 Identities=23% Similarity=0.299 Sum_probs=42.4
Q ss_pred EEcCCCCEEEEEecC-------CCce-eEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEE
Q 039497 336 SFSPDGGLIVFNHDF-------ELNA-GIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIA 406 (642)
Q Consensus 336 ~~spdg~~l~~~~~~-------~~~~-~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~ 406 (642)
+.+|-|--||...+. .... .|.+++..|.....+.. .+.+..+.|+.+.+.|++.. ++.++++
T Consensus 35 a~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~--------dG~v~vy 106 (410)
T PF04841_consen 35 AVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQS--------DGTVRVY 106 (410)
T ss_pred EEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEc--------CCEEEEE
Confidence 445555555554332 2233 59999998887766655 56788899998766555443 6778888
Q ss_pred EE
Q 039497 407 RV 408 (642)
Q Consensus 407 ~~ 408 (642)
++
T Consensus 107 ~~ 108 (410)
T PF04841_consen 107 DL 108 (410)
T ss_pred eC
Confidence 76
No 320
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.32 E-value=2.7 Score=39.92 Aligned_cols=67 Identities=19% Similarity=0.284 Sum_probs=40.9
Q ss_pred CCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-C---CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC
Q 039497 446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-G---PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD 521 (642)
Q Consensus 446 Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~---~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~ 521 (642)
++..|++.... ..|+.+|..+|+. +..... . ...........+++.+++....+. |+.+|++
T Consensus 75 ~~~~v~v~~~~---~~l~~~d~~tG~~---~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------l~~~d~~ 140 (238)
T PF13360_consen 75 DGGRVYVGTSD---GSLYALDAKTGKV---LWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGK--------LVALDPK 140 (238)
T ss_dssp ETTEEEEEETT---SEEEEEETTTSCE---EEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSE--------EEEEETT
T ss_pred cccccccccce---eeeEecccCCcce---eeeeccccccccccccccCceEecCEEEEEeccCc--------EEEEecC
Confidence 45566666522 2899999999986 333211 1 111223344445888888775443 9999999
Q ss_pred CCceE
Q 039497 522 GSGLR 526 (642)
Q Consensus 522 ~~~~~ 526 (642)
+|+..
T Consensus 141 tG~~~ 145 (238)
T PF13360_consen 141 TGKLL 145 (238)
T ss_dssp TTEEE
T ss_pred CCcEE
Confidence 88763
No 321
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.27 E-value=0.43 Score=48.13 Aligned_cols=165 Identities=17% Similarity=0.179 Sum_probs=82.7
Q ss_pred ccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC----CCCCcccceeEecC---CCEEEEEecCC-CCCC
Q 039497 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT----DGPWIDTMPSWSPK---GDLIAFSSNRH-NPDN 509 (642)
Q Consensus 438 ~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~----~~~~~~~~~~~spd---G~~l~~~~~~~-~~~~ 509 (642)
...++|.|||+.++ + .+.| .|++++.+ |.....+..+. ........++++|+ ..+||+..... ....
T Consensus 4 P~~~a~~pdG~l~v-~-e~~G--~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 4 PRSMAFLPDGRLLV-A-ERSG--RIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp EEEEEEETTSCEEE-E-ETTT--EEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred ceEEEEeCCCcEEE-E-eCCc--eEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 35689999986544 3 3334 78888843 44200112221 12233455688884 34455444421 1112
Q ss_pred CCceeEEEEeCCCC-----ceEEeeec-CC-CCCCCcccccccceEEcCCCCEEEEEEecCCc--ccCCCCCCCCCCCCC
Q 039497 510 VEAFSLYVIKPDGS-----GLRRIHVA-GP-EGSGDVDRERINHVCFSADGEWLLFTANLGAV--MAEPVSWPNQFQPYG 580 (642)
Q Consensus 510 ~~~~~l~~~d~~~~-----~~~~l~~~-~~-~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~--~~~~~~~~~~~~~~~ 580 (642)
.....|.++.++.+ ..+.|... .. .. .......+.|.||| +||++..+... ..+.. -...+
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~----~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~-----~~~~G 148 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSS----GNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDP-----NSLRG 148 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CS----SSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCST-----TSSTT
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCC----CCCCCccccCCCCC-cEEEEeCCCCCccccccc-----ccccc
Confidence 24567888877654 12222211 10 00 00133568999999 67777655443 11111 11356
Q ss_pred cEEEEEcCCCc-------------eeeccCCCCCCCCcEEecC-CceEEee
Q 039497 581 DLYVVKLDGSG-------------LRRLTWNGYENGTPAWHPG-NQLDLGK 617 (642)
Q Consensus 581 ~l~~~~~~~~~-------------~~~lt~~~~~~~~~~~s~d-g~~~~~~ 617 (642)
.|.+++.++.. ...+...-.+...++|.|. |+++++.
T Consensus 149 ~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d 199 (331)
T PF07995_consen 149 KILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAAD 199 (331)
T ss_dssp EEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEE
T ss_pred eEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEc
Confidence 89999988752 1222222234467899998 8888765
No 322
>PRK13615 lipoprotein LpqB; Provisional
Probab=95.25 E-value=2.2 Score=45.83 Aligned_cols=166 Identities=12% Similarity=0.060 Sum_probs=96.3
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (642)
..+..|+||+.+++... ...+++-... +..+.+........+.|.++| .+..+..+ ...++.....
T Consensus 337 ~s~avS~dg~~~A~v~~---~~~l~vg~~~-~~~~~~~~~~~Lt~PS~d~~g-~vWtv~~g-------~~~~l~~~~~-- 402 (557)
T PRK13615 337 DAATLSADGRQAAVRNA---SGVWSVGDGD-RDAVLLDTRPGLVAPSLDAQG-YVWSTPAS-------DPRGLVAWGP-- 402 (557)
T ss_pred ccceEcCCCceEEEEcC---CceEEEecCC-CcceeeccCCccccCcCcCCC-CEEEEeCC-------CceEEEEecC--
Confidence 45789999999999854 2356655444 344455445568899999998 67666532 2344444433
Q ss_pred CCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEEC--CCCcc--c-cceeeCCCCCCccc
Q 039497 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA--VNGEF--N-GDIRQLTDGPWIDT 487 (642)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~--~~g~~--~-~~~~~l~~~~~~~~ 487 (642)
.|.. ..........+.+..+.+|+||-+++.....++..+|++--+ ..+.. . .....+........
T Consensus 403 ------~G~~---~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~ 473 (557)
T PRK13615 403 ------DGVG---HPVAVSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPL 473 (557)
T ss_pred ------CCce---EEeeccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcce
Confidence 2211 111111112246788999999999999876666667775332 23321 0 00122222233566
Q ss_pred ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE
Q 039497 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526 (642)
Q Consensus 488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 526 (642)
...|..+++.++.....+ ....++++.+.+....
T Consensus 474 sl~W~~~~~laVl~~~~~-----~~~~v~~v~v~g~~~~ 507 (557)
T PRK13615 474 DATWVDELDVATLTLAPD-----GERQVELHQVGGPSKD 507 (557)
T ss_pred eeEEcCCCEEEEEeccCC-----CCceEEEEECCCcccc
Confidence 789999887545443322 3456888888765443
No 323
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.06 E-value=2.8 Score=38.64 Aligned_cols=145 Identities=12% Similarity=0.083 Sum_probs=78.2
Q ss_pred CccCcEECCCCCeEEEEeCCCC------ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCC
Q 039497 437 NNAFPSCSPDGKFLVFRSGRSG------HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV 510 (642)
Q Consensus 437 ~~~~~~~SpDg~~l~~~~~~~g------~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~ 510 (642)
+......+|||++..-+-...+ ...||.|-+. ++ +..+-..-...+.++|+.|-+.+||....+
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~----v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln----- 179 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQ----VELIWNCVGISNGLAWDSDAKKFYYIDSLN----- 179 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccC-CC----ceeeehhccCCccccccccCcEEEEEccCc-----
Confidence 4455678999999543322211 3377777654 55 366666556667889999999999987754
Q ss_pred CceeEEEEeCCCCce---EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEc
Q 039497 511 EAFSLYVIKPDGSGL---RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKL 587 (642)
Q Consensus 511 ~~~~l~~~d~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 587 (642)
....-|-||..+|.. +.+....... +.+...+..+++..+|...+.+-+.+ .++.+|+
T Consensus 180 ~~V~a~dyd~~tG~~snr~~i~dlrk~~--~~e~~~PDGm~ID~eG~L~Va~~ng~-----------------~V~~~dp 240 (310)
T KOG4499|consen 180 YEVDAYDYDCPTGDLSNRKVIFDLRKSQ--PFESLEPDGMTIDTEGNLYVATFNGG-----------------TVQKVDP 240 (310)
T ss_pred eEEeeeecCCCcccccCcceeEEeccCC--CcCCCCCCcceEccCCcEEEEEecCc-----------------EEEEECC
Confidence 222236677877743 2222211100 00000123345555565333333322 7888888
Q ss_pred CCCc-eeeccCCCCCCCCcEEecC
Q 039497 588 DGSG-LRRLTWNGYENGTPAWHPG 610 (642)
Q Consensus 588 ~~~~-~~~lt~~~~~~~~~~~s~d 610 (642)
.+|+ +..+--.--.+.+.+|---
T Consensus 241 ~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 241 TTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCCcEEEEEEcCCCceEEEEecCC
Confidence 7765 2222222233456677533
No 324
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=94.91 E-value=1.7 Score=43.30 Aligned_cols=146 Identities=14% Similarity=0.193 Sum_probs=92.2
Q ss_pred CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCC----CccCcEECCCCC
Q 039497 373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETG----NNAFPSCSPDGK 448 (642)
Q Consensus 373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~SpDg~ 448 (642)
+..-.++|...|..|+++. ...-++.+.. . ++ ..+.++....+ ....+.+.++|
T Consensus 115 GRPLGl~f~~~ggdL~VaD---------AYlGL~~V~p--~-----g~-----~a~~l~~~~~G~~~kf~N~ldI~~~g- 172 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVAD---------AYLGLLKVGP--E-----GG-----LAELLADEAEGKPFKFLNDLDIDPEG- 172 (376)
T ss_pred CCcceEEeccCCCeEEEEe---------cceeeEEECC--C-----CC-----cceeccccccCeeeeecCceeEcCCC-
Confidence 5566778888887777764 4555777766 3 23 34444433211 23345666644
Q ss_pred eEEEEeCC---------------CCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCce
Q 039497 449 FLVFRSGR---------------SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF 513 (642)
Q Consensus 449 ~l~~~~~~---------------~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~ 513 (642)
.|+|+... +...+|+++|..+... +.|...-.-.+.++.|||+..+++......
T Consensus 173 ~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~----~VLld~L~F~NGlaLS~d~sfvl~~Et~~~------- 241 (376)
T KOG1520|consen 173 VVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVT----KVLLDGLYFPNGLALSPDGSFVLVAETTTA------- 241 (376)
T ss_pred eEEEeccccccchhheEEeeecCCCccceEEecCcccch----hhhhhcccccccccCCCCCCEEEEEeeccc-------
Confidence 45554321 1244799999887763 677666666788999999999999877543
Q ss_pred eEEEEeCCCCce---EEeeecCCCCCCCcccccccceEEcCCCCEEEEE
Q 039497 514 SLYVIKPDGSGL---RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559 (642)
Q Consensus 514 ~l~~~d~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~ 559 (642)
+|.+|-+++.+. +.+.. +..+ .+..+.-+++|.+.+..
T Consensus 242 ri~rywi~g~k~gt~EvFa~-~LPG-------~PDNIR~~~~G~fWVal 282 (376)
T KOG1520|consen 242 RIKRYWIKGPKAGTSEVFAE-GLPG-------YPDNIRRDSTGHFWVAL 282 (376)
T ss_pred eeeeeEecCCccCchhhHhh-cCCC-------CCcceeECCCCCEEEEE
Confidence 477777776554 33332 3444 56678889999755444
No 325
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=94.77 E-value=3.4 Score=44.65 Aligned_cols=143 Identities=13% Similarity=0.203 Sum_probs=76.9
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCC----------CEEEEEEcCCCcccCC
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTE----------KHVIYTSTGPIFQSER 400 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg----------~~l~~~~~~~~~~~~~ 400 (642)
....|+|.| .|+|.+ ..-|.++|.-+-+..+... ...+..+.|+|-. ..+...+. .-.
T Consensus 19 ~A~Dw~~~G-LiAygs----hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsa-----D~~ 88 (1062)
T KOG1912|consen 19 NAADWSPSG-LIAYGS----HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASA-----DIS 88 (1062)
T ss_pred cccccCccc-eEEEec----CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEec-----ccc
Confidence 456899988 588854 4678888876655444333 4456667776632 22333322 125
Q ss_pred CeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEE---CCCCCeEEEEeCCCCceeEEEEECCCCcccccee
Q 039497 401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSC---SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR 477 (642)
Q Consensus 401 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~ 477 (642)
+++-+|++.. .- ....+..+. ..+..+.| -+|.+.++.+-. +...|.+|+.++|+. .-
T Consensus 89 GrIil~d~~~--------~s-----~~~~l~~~~-~~~qdl~W~~~rd~Srd~LlaIh--~ss~lvLwntdtG~k---~W 149 (1062)
T KOG1912|consen 89 GRIILVDFVL--------AS-----VINWLSHSN-DSVQDLCWVPARDDSRDVLLAIH--GSSTLVLWNTDTGEK---FW 149 (1062)
T ss_pred CcEEEEEehh--------hh-----hhhhhcCCC-cchhheeeeeccCcchheeEEec--CCcEEEEEEccCCce---ee
Confidence 6777777755 11 223333332 33344444 345555544432 566899999999984 22
Q ss_pred eCCCCCCcccceeEec-CCCEEEEEecC
Q 039497 478 QLTDGPWIDTMPSWSP-KGDLIAFSSNR 504 (642)
Q Consensus 478 ~l~~~~~~~~~~~~sp-dG~~l~~~~~~ 504 (642)
.-+........+.+.| |.+.+.+.+..
T Consensus 150 k~~ys~~iLs~f~~DPfd~rh~~~l~s~ 177 (1062)
T KOG1912|consen 150 KYDYSHEILSCFRVDPFDSRHFCVLGSK 177 (1062)
T ss_pred ccccCCcceeeeeeCCCCcceEEEEccC
Confidence 2222222333345555 44555555444
No 326
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=94.75 E-value=0.12 Score=40.12 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=48.1
Q ss_pred cEECCCCCeEEEEeCC---------------CCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCC
Q 039497 441 PSCSPDGKFLVFRSGR---------------SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH 505 (642)
Q Consensus 441 ~~~SpDg~~l~~~~~~---------------~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~ 505 (642)
+.+.+++..|+|+... ....+|+.+|+.+++. +.|..+-...+.++.|+|+..|+++....
T Consensus 3 ldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~----~vl~~~L~fpNGVals~d~~~vlv~Et~~ 78 (89)
T PF03088_consen 3 LDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKET----TVLLDGLYFPNGVALSPDESFVLVAETGR 78 (89)
T ss_dssp EEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEE----EEEEEEESSEEEEEE-TTSSEEEEEEGGG
T ss_pred eeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeE----EEehhCCCccCeEEEcCCCCEEEEEeccC
Confidence 4566775567776532 2356999999999984 66666556678899999999999988754
Q ss_pred CCCCCCceeEEEEeCCC
Q 039497 506 NPDNVEAFSLYVIKPDG 522 (642)
Q Consensus 506 ~~~~~~~~~l~~~d~~~ 522 (642)
.+|.++-++|
T Consensus 79 -------~Ri~rywl~G 88 (89)
T PF03088_consen 79 -------YRILRYWLKG 88 (89)
T ss_dssp -------TEEEEEESSS
T ss_pred -------ceEEEEEEeC
Confidence 3588877764
No 327
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.73 E-value=4.2 Score=39.04 Aligned_cols=193 Identities=19% Similarity=0.257 Sum_probs=100.8
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEEC--CCCCeeEEee-----cCCceeeeeecC--CCEEEEEEcCCCcccCCCeEE
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKS--DGSKRWTLIK-----DRTAFYNSWSPT--EKHVIYTSTGPIFQSERATVQ 404 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~--~~~~~~~l~~-----~~~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~ 404 (642)
...|.+-|++++..+. + ..|-++|. +++. ...+. .+.+..+.|.+- |+.|+.++. +..+.
T Consensus 18 dVs~D~~GRRmAtCSs-D--q~vkI~d~~~~s~~-W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~-------Drtv~ 86 (361)
T KOG2445|consen 18 DVSFDFYGRRMATCSS-D--QTVKIWDSTSDSGT-WSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY-------DRTVS 86 (361)
T ss_pred eeeecccCceeeeccC-C--CcEEEEeccCCCCc-eEEeeeEEecCCcEEEEEecCccccceEEEEec-------CCcee
Confidence 3477888999998765 3 44555553 3333 33332 667888888663 888888885 67788
Q ss_pred EEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCC--CCeEEEEeCCCCceeEEEEECCC-Ccc-----ccce
Q 039497 405 IARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD--GKFLVFRSGRSGHKNLFVLDAVN-GEF-----NGDI 476 (642)
Q Consensus 405 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD--g~~l~~~~~~~g~~~l~~~d~~~-g~~-----~~~~ 476 (642)
||.-.. +....++. + =.....|.+.. ..+..+.|.|- |-.++..+ .+|.-+|| +.-. ... ..++
T Consensus 87 iWEE~~--~~~~~~~~-~-Wv~~ttl~Dsr-ssV~DV~FaP~hlGLklA~~~-aDG~lRIY--EA~dp~nLs~W~Lq~Ei 158 (361)
T KOG2445|consen 87 IWEEQE--KSEEAHGR-R-WVRRTTLVDSR-SSVTDVKFAPKHLGLKLAAAS-ADGILRIY--EAPDPMNLSQWTLQHEI 158 (361)
T ss_pred eeeecc--cccccccc-e-eEEEEEeecCC-cceeEEEecchhcceEEEEec-cCcEEEEE--ecCCccccccchhhhhh
Confidence 887532 10000011 0 00223344444 56777888875 33444443 23433333 3211 110 0001
Q ss_pred eeCCCCC----CcccceeEecC---CCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec-CCCCCCCcccccccceE
Q 039497 477 RQLTDGP----WIDTMPSWSPK---GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVC 548 (642)
Q Consensus 477 ~~l~~~~----~~~~~~~~spd---G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~ 548 (642)
..+...+ .....+.|+|. ..+|+..+.+.. +.-....||.++-.+.+...+... ++.. .+.++.
T Consensus 159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a-~~~~~~~Iye~~e~~rKw~kva~L~d~~d-------pI~di~ 230 (361)
T KOG2445|consen 159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDA-PHLNKVKIYEYNENGRKWLKVAELPDHTD-------PIRDIS 230 (361)
T ss_pred hhccCCcccccCcceEEeeccccccCceEEEEcccCC-ccccceEEEEecCCcceeeeehhcCCCCC-------cceeee
Confidence 2222222 22344577763 356777776632 233455677776666555544332 3333 678999
Q ss_pred EcCCC
Q 039497 549 FSADG 553 (642)
Q Consensus 549 ~S~Dg 553 (642)
|+|.-
T Consensus 231 wAPn~ 235 (361)
T KOG2445|consen 231 WAPNI 235 (361)
T ss_pred ecccc
Confidence 99963
No 328
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=94.72 E-value=4.5 Score=43.39 Aligned_cols=242 Identities=10% Similarity=-0.026 Sum_probs=122.5
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeE---Eee-----cCCceeeeeecCCCE--EEEEEcCCCcccCCCe
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWT---LIK-----DRTAFYNSWSPTEKH--VIYTSTGPIFQSERAT 402 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~---l~~-----~~~~~~~~~spdg~~--l~~~~~~~~~~~~~~~ 402 (642)
....|+|.-..++..+ ...++|.++|+..+.... +.. ...+..+.|..+-.- ++.++. ++.
T Consensus 246 ~~~~f~p~~p~ll~gG--~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss-------DG~ 316 (555)
T KOG1587|consen 246 TCLKFCPFDPNLLAGG--CYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS-------DGS 316 (555)
T ss_pred eEEEeccCCcceEEee--ccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec-------CCc
Confidence 4557777665565544 335788888887766421 111 445667778665433 665553 788
Q ss_pred EEEEEEEeecCCCCCCCCCccccc---eEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccc-----c
Q 039497 403 VQIARVSFQLDPSDDNNREEIPCD---VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN-----G 474 (642)
Q Consensus 403 ~~l~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-----~ 474 (642)
+..|.++....+. .+..+... ....... .....+.|.|-.-..++.....| .|+.-+-.+.+.. +
T Consensus 317 i~~W~~~~l~~P~---e~~~~~~~~~~~~~~~~~--~~~t~~~F~~~~p~~FiVGTe~G--~v~~~~r~g~~~~~~~~~~ 389 (555)
T KOG1587|consen 317 ICSWDTDMLSLPV---EGLLLESKKHKGQQSSKA--VGATSLKFEPTDPNHFIVGTEEG--KVYKGCRKGYTPAPEVSYK 389 (555)
T ss_pred Eeeeeccccccch---hhcccccccccccccccc--cceeeEeeccCCCceEEEEcCCc--EEEEEeccCCccccccccc
Confidence 8888775411100 00000000 0000000 12334556553333223332233 5665444432210 0
Q ss_pred ceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCC
Q 039497 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554 (642)
Q Consensus 475 ~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~ 554 (642)
.......+.+.+..+.++|=+..++.+..+- .+.+|..+- ...++....... ..+.+++|||-.-
T Consensus 390 ~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW--------~vriWs~~~-~~~Pl~~~~~~~------~~v~~vaWSptrp 454 (555)
T KOG1587|consen 390 GHSTFITHIGPVYAVSRNPFYPKNFLSVGDW--------TVRIWSEDV-IASPLLSLDSSP------DYVTDVAWSPTRP 454 (555)
T ss_pred ccccccccCcceEeeecCCCccceeeeeccc--------eeEeccccC-CCCcchhhhhcc------ceeeeeEEcCcCc
Confidence 0112223445566778888777666655432 356665431 122232211111 1478899999987
Q ss_pred EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCC---CCCCCCcEEecCCceEEeecCCC
Q 039497 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN---GYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~---~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
.++++....+ .|+.||+.-.....+... .....-..|++.|+.++-....|
T Consensus 455 avF~~~d~~G----------------~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G 508 (555)
T KOG1587|consen 455 AVFATVDGDG----------------NLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANG 508 (555)
T ss_pred eEEEEEcCCC----------------ceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCC
Confidence 7766665433 788888765443322221 22234668888899886655555
No 329
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=94.60 E-value=1.2 Score=43.96 Aligned_cols=63 Identities=11% Similarity=0.043 Sum_probs=38.7
Q ss_pred cCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCC
Q 039497 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH 505 (642)
Q Consensus 439 ~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~ 505 (642)
..+.+-.+...+...........+.++....+. .+.+..+-..+..++||||++.|+++..++
T Consensus 111 ~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~----~~~~lGhvSml~dVavS~D~~~IitaDRDE 173 (390)
T KOG3914|consen 111 TAISFIREDTSVLVADKAGDVYSFDILSADSGR----CEPILGHVSMLLDVAVSPDDQFIITADRDE 173 (390)
T ss_pred ceeeeeeccceEEEEeecCCceeeeeecccccC----cchhhhhhhhhheeeecCCCCEEEEecCCc
Confidence 345555555565555433333345555544455 356665656678889999999888777665
No 330
>PRK13614 lipoprotein LpqB; Provisional
Probab=94.59 E-value=2.8 Score=45.14 Aligned_cols=172 Identities=13% Similarity=0.085 Sum_probs=96.9
Q ss_pred CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEE
Q 039497 374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453 (642)
Q Consensus 374 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~ 453 (642)
.+.++..|+|++.+++... ....++.... ++ ..+.+.... ....|+|.++| ++...
T Consensus 344 ~~~s~avS~~g~~~A~~~~--------~~~~l~~~~~--------g~-----~~~~~~~g~--~Lt~PS~d~~g-~vWtv 399 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNG--------SRTTLYTVSP--------GQ-----PARALTSGS--TLTRPSFSPQD-WVWTA 399 (573)
T ss_pred cccceeecCCCceEEEecC--------CCcEEEEecC--------CC-----cceeeecCC--CccCCcccCCC-CEEEe
Confidence 4667899999999998752 2345555544 23 344444433 57789999998 66544
Q ss_pred eCCCCceeEEEEECC-CCccc-cceeeC--CCCCC-cccceeEecCCCEEEEEecCCCCCCCCceeEEEE--eC-CCCce
Q 039497 454 SGRSGHKNLFVLDAV-NGEFN-GDIRQL--TDGPW-IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVI--KP-DGSGL 525 (642)
Q Consensus 454 ~~~~g~~~l~~~d~~-~g~~~-~~~~~l--~~~~~-~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~--d~-~~~~~ 525 (642)
. +.....|.++... +++.. .....+ ....+ .+..+..|+||-++++....+ +..+|++. -- ..+..
T Consensus 400 ~-~g~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~-----g~~~V~va~V~R~~~G~P 473 (573)
T PRK13614 400 G-PGGNGRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQN-----GKSRVQVAGIVRNEDGTP 473 (573)
T ss_pred e-CCCCceEEEEecCCCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeC-----CccEEEEEEEEeCCCCCe
Confidence 3 3333366665543 22210 000011 11122 377889999999999887544 23335542 22 23444
Q ss_pred EEeeec---CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc
Q 039497 526 RRIHVA---GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596 (642)
Q Consensus 526 ~~l~~~---~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt 596 (642)
+.|+.. .... .+.++.|..++..++.+...++ ...++++.++++..+.+.
T Consensus 474 ~~L~~~~~~~~~~-------~~~sl~W~~~~sl~V~~~~~~~--------------~~~~~~v~v~~g~~~~l~ 526 (573)
T PRK13614 474 RELTAPITLAADS-------DADTGAWVGDSTVVVTKASATS--------------NVVPELLSVDAGQPQQLA 526 (573)
T ss_pred EEccCceecccCC-------CcceeEEcCCCEEEEEeccCCC--------------cceEEEEEeCCCCcccCC
Confidence 555431 1112 4678999999886666544332 236788888665544443
No 331
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=94.55 E-value=1.5 Score=42.64 Aligned_cols=208 Identities=13% Similarity=0.219 Sum_probs=103.5
Q ss_pred CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCcc------------------------ccceE
Q 039497 373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEI------------------------PCDVK 428 (642)
Q Consensus 373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------------------------~~~~~ 428 (642)
..+..+.|-+++....|... +.+.++.+|.+.. .+... .+..+ ...++
T Consensus 85 EKinkIrw~~~~n~a~FLls-----tNdktiKlWKi~e--r~~k~-~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~pr 156 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLS-----TNDKTIKLWKIRE--RGSKK-EGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPR 156 (433)
T ss_pred hhhhhceecCCCCccEEEEe-----cCCcceeeeeeec--ccccc-ccccccccCCCCccceeeceeeccccceeeeeee
Confidence 35667899998876655543 4588999999876 21100 00000 00001
Q ss_pred -EccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC-----CcccceeEecCC-CEEEEE
Q 039497 429 -ILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP-----WIDTMPSWSPKG-DLIAFS 501 (642)
Q Consensus 429 -~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~-----~~~~~~~~spdG-~~l~~~ 501 (642)
.........+.++++..|+..++ +.++-+..||-+++..+... +..+.... .-++...|+|.- +.++|.
T Consensus 157 Rv~aNaHtyhiNSIS~NsD~Et~l--SADdLRINLWnlei~d~sFn--IVDIKP~nmEeLteVITsaEFhp~~cn~f~YS 232 (433)
T KOG1354|consen 157 RVYANAHTYHINSISVNSDKETFL--SADDLRINLWNLEIIDQSFN--IVDIKPANMEELTEVITSAEFHPHHCNVFVYS 232 (433)
T ss_pred eeccccceeEeeeeeecCccceEe--eccceeeeeccccccCCcee--EEEccccCHHHHHHHHhhhccCHhHccEEEEe
Confidence 11111112344566666766544 33333445555554444320 11222211 123456788865 556777
Q ss_pred ecCCCCCCCCceeEEEEeCCCCceE----EeeecCCCCCCCcc-----cccccceEEcCCCCEEEEEEecCCcccCCCCC
Q 039497 502 SNRHNPDNVEAFSLYVIKPDGSGLR----RIHVAGPEGSGDVD-----RERINHVCFSADGEWLLFTANLGAVMAEPVSW 572 (642)
Q Consensus 502 ~~~~~~~~~~~~~l~~~d~~~~~~~----~l~~~~~~~~~~~~-----~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~ 572 (642)
+..+. |.+.|+....+. .+....... .+.. -..+.++.||.+|++|+... ....
T Consensus 233 SSKGt--------IrLcDmR~~aLCd~hsKlfEepedp-~~rsffseiIsSISDvKFs~sGryilsRD-yltv------- 295 (433)
T KOG1354|consen 233 SSKGT--------IRLCDMRQSALCDAHSKLFEEPEDP-SSRSFFSEIISSISDVKFSHSGRYILSRD-YLTV------- 295 (433)
T ss_pred cCCCc--------EEEeechhhhhhcchhhhhccccCC-cchhhHHHHhhhhhceEEccCCcEEEEec-ccee-------
Confidence 76665 899998743221 111100000 0000 01356899999999887554 2211
Q ss_pred CCCCCCCCcEEEEEcCCCceeeccCCC---------------CCCCCcEEecCCceEEee
Q 039497 573 PNQFQPYGDLYVVKLDGSGLRRLTWNG---------------YENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 573 ~~~~~~~~~l~~~~~~~~~~~~lt~~~---------------~~~~~~~~s~dg~~~~~~ 617 (642)
.||-++.+.+.....+.+. ..-..+.||-++.++++.
T Consensus 296 --------k~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TG 347 (433)
T KOG1354|consen 296 --------KLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTG 347 (433)
T ss_pred --------EEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecc
Confidence 5665555555444333221 111457888888877764
No 332
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=94.54 E-value=0.39 Score=44.68 Aligned_cols=70 Identities=17% Similarity=0.090 Sum_probs=51.2
Q ss_pred CccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEE
Q 039497 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY 516 (642)
Q Consensus 437 ~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~ 516 (642)
.+..+.+-||+|.++.+.. +++.+||- -++.+. +..|..+...+..++||||-..++.++.+.. |-
T Consensus 253 Gv~gvrIRpD~KIlATAGW-D~RiRVys--wrtl~p---LAVLkyHsagvn~vAfspd~~lmAaaskD~r--------IS 318 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAGW-DHRIRVYS--WRTLNP---LAVLKYHSAGVNAVAFSPDCELMAAASKDAR--------IS 318 (323)
T ss_pred CccceEEccCCcEEeeccc-CCcEEEEE--eccCCc---hhhhhhhhcceeEEEeCCCCchhhhccCCce--------EE
Confidence 4567889999987776653 45445554 456765 6778888888899999999888888776653 66
Q ss_pred EEeC
Q 039497 517 VIKP 520 (642)
Q Consensus 517 ~~d~ 520 (642)
+|++
T Consensus 319 LWkL 322 (323)
T KOG0322|consen 319 LWKL 322 (323)
T ss_pred eeec
Confidence 6654
No 333
>PRK13615 lipoprotein LpqB; Provisional
Probab=94.26 E-value=9.4 Score=41.13 Aligned_cols=163 Identities=9% Similarity=-0.010 Sum_probs=91.6
Q ss_pred cCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCC
Q 039497 285 YNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGS 364 (642)
Q Consensus 285 ~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~ 364 (642)
..++.|+||..+++.... ..+++.........+ .....-..|.|.++| ++..+.. .....+..... .+
T Consensus 337 ~s~avS~dg~~~A~v~~~--------~~l~vg~~~~~~~~~-~~~~~Lt~PS~d~~g-~vWtv~~-g~~~~l~~~~~-~G 404 (557)
T PRK13615 337 DAATLSADGRQAAVRNAS--------GVWSVGDGDRDAVLL-DTRPGLVAPSLDAQG-YVWSTPA-SDPRGLVAWGP-DG 404 (557)
T ss_pred ccceEcCCCceEEEEcCC--------ceEEEecCCCcceee-ccCCccccCcCcCCC-CEEEEeC-CCceEEEEecC-CC
Confidence 578899999999888321 123333333221111 111123578999998 5555443 22333333333 33
Q ss_pred CeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCC--CccccceEEccccCCCCc
Q 039497 365 KRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR--EEIPCDVKILTKEETGNN 438 (642)
Q Consensus 365 ~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 438 (642)
+...+.. ...+..+..|+||-++++.... .+..++.+..+.. + ++ ..+......+.... ...
T Consensus 405 ~~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~----~g~~~V~va~V~R--~-----~~~P~~L~~~p~~l~~~l-~~v 472 (557)
T PRK13615 405 VGHPVAVSWTATGRVVSLEVARDGARVLVQLET----GAGPQLLVASIVR--D-----GGVPTSLTTTPLELLASP-GTP 472 (557)
T ss_pred ceEEeeccccCCCeeEEEEeCCCccEEEEEEec----CCCCEEEEEEEEe--C-----CCcceEeeeccEEcccCc-Ccc
Confidence 4333332 4568999999999999998642 3345677766655 2 22 01101223333333 456
Q ss_pred cCcEECCCCCeEEEEeCCCCceeEEEEECCCCc
Q 039497 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471 (642)
Q Consensus 439 ~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~ 471 (642)
..+.|..+++.++......+..+++++.+.+..
T Consensus 473 ~sl~W~~~~~laVl~~~~~~~~~v~~v~v~g~~ 505 (557)
T PRK13615 473 LDATWVDELDVATLTLAPDGERQVELHQVGGPS 505 (557)
T ss_pred eeeEEcCCCEEEEEeccCCCCceEEEEECCCcc
Confidence 778999888755554333455688999988443
No 334
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=94.06 E-value=0.4 Score=44.65 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=40.8
Q ss_pred ccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC-ceeeccCCCCCCCCcEEecCCceEEeecC
Q 039497 544 INHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS-GLRRLTWNGYENGTPAWHPGNQLDLGKLR 619 (642)
Q Consensus 544 ~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lt~~~~~~~~~~~s~dg~~~~~~~~ 619 (642)
+..+.+-||+|.++...-++.. +||.| .+. .+..|+.+...+..++||||..++++...
T Consensus 254 v~gvrIRpD~KIlATAGWD~Ri---------------RVysw--rtl~pLAVLkyHsagvn~vAfspd~~lmAaask 313 (323)
T KOG0322|consen 254 VSGVRIRPDGKILATAGWDHRI---------------RVYSW--RTLNPLAVLKYHSAGVNAVAFSPDCELMAAASK 313 (323)
T ss_pred ccceEEccCCcEEeecccCCcE---------------EEEEe--ccCCchhhhhhhhcceeEEEeCCCCchhhhccC
Confidence 4568999999977766655422 55555 443 35677777778889999999766654433
No 335
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.00 E-value=3.3 Score=44.31 Aligned_cols=95 Identities=15% Similarity=0.134 Sum_probs=63.2
Q ss_pred eeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC----cceEeeCCeEEEEEecCCCceEEEEEe
Q 039497 146 SVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG----WPTWSGDSTIYFHRQADDGWWSIFRVS 221 (642)
Q Consensus 146 ~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~----~~~wspdg~~~~~~~~~~g~~~l~~~~ 221 (642)
.++..+++|++....+ .||+++..+++.+.+.++... ....|++..+++.. ...|...++.++
T Consensus 40 c~dst~~~l~~GsS~G------------~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAag-t~~g~V~v~ql~ 106 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAG------------SVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAG-TASGRVSVFQLN 106 (726)
T ss_pred EeecCCceEEEecccc------------eEEEEecCchhhhcccccCccceEEEEEecchhHhhhhh-cCCceEEeehhh
Confidence 4566789999988766 799999999988888774332 23666776666555 456767777776
Q ss_pred cCCCcccccCCccceeeCCC----CCccccceeecCCcEEEEE
Q 039497 222 FPENLEFLGFPIAPTRVTPP----GVHCFTPAAFHDGKRLAVA 260 (642)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~SpdG~~l~~~ 260 (642)
..... ....++.. +..+....||+||+++++.
T Consensus 107 ~~~p~-------~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysG 142 (726)
T KOG3621|consen 107 KELPR-------DLDYVTPCDKSHKCRVTALEWSKNGMKLYSG 142 (726)
T ss_pred ccCCC-------cceeeccccccCCceEEEEEecccccEEeec
Confidence 63221 22233332 3456778889999888873
No 336
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.97 E-value=4.3 Score=41.71 Aligned_cols=116 Identities=17% Similarity=0.237 Sum_probs=63.4
Q ss_pred EEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEE-ECCC-CccccceeeCC----CC----CCcccceeEecCCCE
Q 039497 428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVL-DAVN-GEFNGDIRQLT----DG----PWIDTMPSWSPKGDL 497 (642)
Q Consensus 428 ~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~-d~~~-g~~~~~~~~l~----~~----~~~~~~~~~spdG~~ 497 (642)
+.+...- .....+.+.++| |+++. ..+|+++ +.+. ++.-...+.|. .. ......+.|.|||+
T Consensus 65 ~vfa~~l-~~p~Gi~~~~~G--lyV~~----~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~- 136 (367)
T TIGR02604 65 NVFAEEL-SMVTGLAVAVGG--VYVAT----PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW- 136 (367)
T ss_pred EEeecCC-CCccceeEecCC--EEEeC----CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-
Confidence 3444333 445678899988 54443 2368877 3321 11100012222 11 12345689999996
Q ss_pred EEEEecCCCC------------CCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEe
Q 039497 498 IAFSSNRHNP------------DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN 561 (642)
Q Consensus 498 l~~~~~~~~~------------~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~ 561 (642)
||+....... .......|++++.++++.+.+.. +.. ....++|+++|+. +++.+
T Consensus 137 LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~-G~r--------np~Gl~~d~~G~l-~~tdn 202 (367)
T TIGR02604 137 LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH-GFQ--------NPYGHSVDSWGDV-FFCDN 202 (367)
T ss_pred EEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec-CcC--------CCccceECCCCCE-EEEcc
Confidence 6665442100 00112469999999988776653 333 3567899999975 45444
No 337
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=93.97 E-value=0.17 Score=54.46 Aligned_cols=227 Identities=11% Similarity=0.030 Sum_probs=117.0
Q ss_pred cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
..|...|++|+..++ +-...||- .++.. .+.. .+.+...+.+.+.-.++..+. +.-+++|.+..
T Consensus 196 a~fDrtg~~Iitgsd-d~lvKiwS--~et~~--~lAs~rGhs~ditdlavs~~n~~iaaaS~-------D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 196 AIFDRTGRYIITGSD-DRLVKIWS--METAR--CLASCRGHSGDITDLAVSSNNTMIAAASN-------DKVIRVWRLPD 263 (1113)
T ss_pred eeeccccceEeecCc-cceeeeee--ccchh--hhccCCCCccccchhccchhhhhhhhccc-------CceEEEEecCC
Confidence 356777877766443 33344554 33332 2222 445666777666666665553 56789999865
Q ss_pred ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccc-----------------
Q 039497 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN----------------- 473 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~----------------- 473 (642)
+. .+..|..+. +.+..++|||=- .+..+|.-.+|-+++..-..+
T Consensus 264 --------~~-----pvsvLrght-gavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~ 324 (1113)
T KOG0644|consen 264 --------GA-----PVSVLRGHT-GAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILF 324 (1113)
T ss_pred --------Cc-----hHHHHhccc-cceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeec
Confidence 22 455555665 778888888732 233334333433331110000
Q ss_pred --------cceeeCCCCCCcccceeEecCCCEEEEEecCCCCC-----CCCceeEEEEeCCCCceEEeeecCCCCCCCcc
Q 039497 474 --------GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD-----NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVD 540 (642)
Q Consensus 474 --------~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~-----~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 540 (642)
+..+..+...+.....+|...+ +.|........ .-....+++|++.++.+.++.. ++..
T Consensus 325 ~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~--lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~-ghsd----- 396 (1113)
T KOG0644|consen 325 ENNGDRFLTGSRDGEARNHEFEQLAWRSNL--LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM-GHSD----- 396 (1113)
T ss_pred cccccccccccCCcccccchhhHhhhhccc--eEEEeccccccccceeeeeeeEeeeeecccchhhhhhc-cccc-----
Confidence 0000111111111122343222 22222110000 0023446677777776555443 3333
Q ss_pred cccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCC-CCCCCCcEEecCCceEEeec
Q 039497 541 RERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN-GYENGTPAWHPGNQLDLGKL 618 (642)
Q Consensus 541 ~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~-~~~~~~~~~s~dg~~~~~~~ 618 (642)
....+.+.|=..+++..+...+ .+.+||+-.+.+.+.... .+...+..||+||+.++-..
T Consensus 397 --~~yvLd~Hpfn~ri~msag~dg----------------st~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd 457 (1113)
T KOG0644|consen 397 --EVYVLDVHPFNPRIAMSAGYDG----------------STIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSD 457 (1113)
T ss_pred --ceeeeeecCCCcHhhhhccCCC----------------ceEeeecccCCcceeeecccceeeccccCCCCceEecCC
Confidence 4566778888888887776654 667777776665555442 35567889999998775443
No 338
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=93.97 E-value=0.19 Score=54.10 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=56.6
Q ss_pred ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCC
Q 039497 459 HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGD 538 (642)
Q Consensus 459 ~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 538 (642)
.-.+..|++.+|.. ...+..+......+.++|=...|+.....++. ..+||+-.|...++...++.
T Consensus 374 ~~~~~vwnl~~g~l---~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgs-------t~iwdi~eg~pik~y~~gh~---- 439 (1113)
T KOG0644|consen 374 DHRLCVWNLYTGQL---LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGS-------TIIWDIWEGIPIKHYFIGHG---- 439 (1113)
T ss_pred eeEeeeeecccchh---hhhhcccccceeeeeecCCCcHhhhhccCCCc-------eEeeecccCCcceeeecccc----
Confidence 34677888888876 56666666666667888877777777665432 78888866655544433322
Q ss_pred cccccccceEEcCCCCEEEEEEe
Q 039497 539 VDRERINHVCFSADGEWLLFTAN 561 (642)
Q Consensus 539 ~~~~~~~~~~~S~Dg~~l~~~~~ 561 (642)
...+-.||+||+.++....
T Consensus 440 ----kl~d~kFSqdgts~~lsd~ 458 (1113)
T KOG0644|consen 440 ----KLVDGKFSQDGTSIALSDD 458 (1113)
T ss_pred ----eeeccccCCCCceEecCCC
Confidence 2445678999888876654
No 339
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=93.87 E-value=0.74 Score=35.85 Aligned_cols=76 Identities=14% Similarity=0.057 Sum_probs=47.1
Q ss_pred eeEecCCCEEEEEecCCCCC----------CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEE
Q 039497 489 PSWSPKGDLIAFSSNRHNPD----------NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLF 558 (642)
Q Consensus 489 ~~~spdG~~l~~~~~~~~~~----------~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~ 558 (642)
+..++++..|||+.....-. ....-+|+.+|+.+++.+.+...-. .++.+++|+|++.|++
T Consensus 3 ldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~---------fpNGVals~d~~~vlv 73 (89)
T PF03088_consen 3 LDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLY---------FPNGVALSPDESFVLV 73 (89)
T ss_dssp EEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEES---------SEEEEEE-TTSSEEEE
T ss_pred eeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCC---------ccCeEEEcCCCCEEEE
Confidence 45677755677776643210 2345679999999998877765321 3467999999999988
Q ss_pred EEecCCcccCCCCCCCCCCCCCcEEEEEcCC
Q 039497 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589 (642)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 589 (642)
+..-. .+|..+-+.|
T Consensus 74 ~Et~~----------------~Ri~rywl~G 88 (89)
T PF03088_consen 74 AETGR----------------YRILRYWLKG 88 (89)
T ss_dssp EEGGG----------------TEEEEEESSS
T ss_pred EeccC----------------ceEEEEEEeC
Confidence 86543 2788776665
No 340
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=93.75 E-value=9.8 Score=39.52 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=39.3
Q ss_pred CCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc
Q 039497 446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG 524 (642)
Q Consensus 446 Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~ 524 (642)
++..|++... ...|+.+|..+|+. +-.... .......|... +.+|++...++. |+.+|.++|+
T Consensus 293 ~~~~vy~~~~---~g~l~ald~~tG~~---~W~~~~~~~~~~~sp~v~--~g~l~v~~~~G~--------l~~ld~~tG~ 356 (394)
T PRK11138 293 DGGRIYLVDQ---NDRVYALDTRGGVE---LWSQSDLLHRLLTAPVLY--NGYLVVGDSEGY--------LHWINREDGR 356 (394)
T ss_pred ECCEEEEEcC---CCeEEEEECCCCcE---EEcccccCCCcccCCEEE--CCEEEEEeCCCE--------EEEEECCCCC
Confidence 4567776653 34899999999874 221111 11223445543 456777665543 8999998887
Q ss_pred eE
Q 039497 525 LR 526 (642)
Q Consensus 525 ~~ 526 (642)
..
T Consensus 357 ~~ 358 (394)
T PRK11138 357 FV 358 (394)
T ss_pred EE
Confidence 54
No 341
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=93.64 E-value=7.6 Score=37.93 Aligned_cols=69 Identities=19% Similarity=0.150 Sum_probs=42.6
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-------------cC---CceeeeeecCCCEEEEEEcCCCc
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-------------DR---TAFYNSWSPTEKHVIYTSTGPIF 396 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-------------~~---~~~~~~~spdg~~l~~~~~~~~~ 396 (642)
..+.||++|++|+.... -...||-++++.+....... .. .-....||-++..++..+.
T Consensus 276 SDvKFs~sGryilsRDy--ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy---- 349 (433)
T KOG1354|consen 276 SDVKFSHSGRYILSRDY--LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSY---- 349 (433)
T ss_pred hceEEccCCcEEEEecc--ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccc----
Confidence 45789999998876432 23556666666665444332 11 1235689988888877764
Q ss_pred ccCCCeEEEEEEEe
Q 039497 397 QSERATVQIARVSF 410 (642)
Q Consensus 397 ~~~~~~~~l~~~~~ 410 (642)
....+++.++.
T Consensus 350 ---~n~frvf~~~~ 360 (433)
T KOG1354|consen 350 ---NNVFRVFNLAR 360 (433)
T ss_pred ---cceEEEecCCC
Confidence 45566666543
No 342
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.40 E-value=0.76 Score=48.88 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=68.7
Q ss_pred EEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497 336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412 (642)
Q Consensus 336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (642)
.++..+++|++... .+.||+++..+++.+.+.. .+.+.....|++...+++.+. .+.+.++.+..
T Consensus 40 c~dst~~~l~~GsS---~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~-------~g~V~v~ql~~-- 107 (726)
T KOG3621|consen 40 CVDATEEYLAMGSS---AGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTA-------SGRVSVFQLNK-- 107 (726)
T ss_pred EeecCCceEEEecc---cceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcC-------CceEEeehhhc--
Confidence 45666788888544 4789999988888766655 233445577888777777653 56666666644
Q ss_pred CCCCCCCCCccccceEEccccC---CCCccCcEECCCCCeEEEEeCCCCceeEEEEEC
Q 039497 413 DPSDDNNREEIPCDVKILTKEE---TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA 467 (642)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~ 467 (642)
.. +.....++... ...+..+.||+||+++++.. ..|.-.+..+|.
T Consensus 108 ------~~---p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD-~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 108 ------EL---PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGD-SQGKVVLTELDS 155 (726)
T ss_pred ------cC---CCcceeeccccccCCceEEEEEecccccEEeecC-CCceEEEEEech
Confidence 11 11333333322 24678899999999987654 345444444443
No 343
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=93.14 E-value=3.8 Score=45.73 Aligned_cols=138 Identities=14% Similarity=0.158 Sum_probs=74.9
Q ss_pred CCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCC-------EEEEEecCCCCCCCCceeEE
Q 039497 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD-------LIAFSSNRHNPDNVEAFSLY 516 (642)
Q Consensus 444 SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~-------~l~~~~~~~~~~~~~~~~l~ 516 (642)
....+.+++.... ....||.+|+..|+. +..-..+. ...-..+.|+.+ ..++.-+.+ .|+
T Consensus 489 ~~~d~~mil~~~~-~~~~ly~mDLe~GKV---V~eW~~~~-~~~v~~~~p~~K~aqlt~e~tflGls~n--------~lf 555 (794)
T PF08553_consen 489 HDQDRNMILLDPN-NPNKLYKMDLERGKV---VEEWKVHD-DIPVVDIAPDSKFAQLTNEQTFLGLSDN--------SLF 555 (794)
T ss_pred hccccceEeecCC-CCCceEEEecCCCcE---EEEeecCC-CcceeEecccccccccCCCceEEEECCC--------ceE
Confidence 3344555555433 345899999999996 33332221 111223444321 112222222 399
Q ss_pred EEeCCCCceEEeeecCCC-CCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eee
Q 039497 517 VIKPDGSGLRRIHVAGPE-GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRR 594 (642)
Q Consensus 517 ~~d~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 594 (642)
+||+.-..-+.+...... ..+ ..+..++=+.+|. |++.+..| +|-+||.-|.. .+.
T Consensus 556 riDpR~~~~k~v~~~~k~Y~~~----~~Fs~~aTt~~G~-iavgs~~G-----------------~IRLyd~~g~~AKT~ 613 (794)
T PF08553_consen 556 RIDPRLSGNKLVDSQSKQYSSK----NNFSCFATTEDGY-IAVGSNKG-----------------DIRLYDRLGKRAKTA 613 (794)
T ss_pred EeccCCCCCceeeccccccccC----CCceEEEecCCce-EEEEeCCC-----------------cEEeecccchhhhhc
Confidence 999864332222211100 000 1345566677774 77777765 67777755544 445
Q ss_pred ccCCCCCCCCcEEecCCceEEe
Q 039497 595 LTWNGYENGTPAWHPGNQLDLG 616 (642)
Q Consensus 595 lt~~~~~~~~~~~s~dg~~~~~ 616 (642)
|..-+..+..+..|.||+|+|+
T Consensus 614 lp~lG~pI~~iDvt~DGkwila 635 (794)
T PF08553_consen 614 LPGLGDPIIGIDVTADGKWILA 635 (794)
T ss_pred CCCCCCCeeEEEecCCCcEEEE
Confidence 5544566789999999999854
No 344
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=93.06 E-value=1.4 Score=49.01 Aligned_cols=143 Identities=12% Similarity=0.097 Sum_probs=76.4
Q ss_pred EEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCC-------EEEEEEcCCCcccCCCeEEEEEEEeecCC
Q 039497 343 LIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEK-------HVIYTSTGPIFQSERATVQIARVSFQLDP 414 (642)
Q Consensus 343 ~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~-------~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 414 (642)
.+++... .....||.+|++.|+++.-.. ...+.-..+.|+.+ ..++.- .+..+..|+... .
T Consensus 494 ~mil~~~-~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGl-------s~n~lfriDpR~--~- 562 (794)
T PF08553_consen 494 NMILLDP-NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGL-------SDNSLFRIDPRL--S- 562 (794)
T ss_pred ceEeecC-CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEE-------CCCceEEeccCC--C-
Confidence 3444332 345789999999999877765 22222344555433 111111 134444444433 2
Q ss_pred CCCCCCCccc-cceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee-CCCCCCcccceeEe
Q 039497 415 SDDNNREEIP-CDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ-LTDGPWIDTMPSWS 492 (642)
Q Consensus 415 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~-l~~~~~~~~~~~~s 492 (642)
+..+. ......... .....++-+.+| +||+.+.. | .|.++|-- |+. .+. |......+.++..+
T Consensus 563 -----~~k~v~~~~k~Y~~~--~~Fs~~aTt~~G-~iavgs~~-G--~IRLyd~~-g~~---AKT~lp~lG~pI~~iDvt 627 (794)
T PF08553_consen 563 -----GNKLVDSQSKQYSSK--NNFSCFATTEDG-YIAVGSNK-G--DIRLYDRL-GKR---AKTALPGLGDPIIGIDVT 627 (794)
T ss_pred -----CCceeeccccccccC--CCceEEEecCCc-eEEEEeCC-C--cEEeeccc-chh---hhhcCCCCCCCeeEEEec
Confidence 11100 011111111 233445667777 67777643 3 66667744 432 344 44444567888999
Q ss_pred cCCCEEEEEecCCCCCCCCceeEEEEeC
Q 039497 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKP 520 (642)
Q Consensus 493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~ 520 (642)
.||+||+.+...- |.+++.
T Consensus 628 ~DGkwilaTc~ty---------LlLi~t 646 (794)
T PF08553_consen 628 ADGKWILATCKTY---------LLLIDT 646 (794)
T ss_pred CCCcEEEEeecce---------EEEEEE
Confidence 9999998887653 666664
No 345
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=92.99 E-value=14 Score=39.01 Aligned_cols=91 Identities=18% Similarity=0.200 Sum_probs=63.9
Q ss_pred eEEEEECCCCCeeEEee-----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE
Q 039497 355 GIKIAKSDGSKRWTLIK-----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI 429 (642)
Q Consensus 355 ~l~~~d~~~~~~~~l~~-----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 429 (642)
...+|+...++.+++.. ...+...+++|+.++++.... ++.+.+|+... ....
T Consensus 237 d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~-------DgSiiLyD~~~---------------~~t~ 294 (545)
T PF11768_consen 237 DSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCE-------DGSIILYDTTR---------------GVTL 294 (545)
T ss_pred EEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEec-------CCeEEEEEcCC---------------Ceee
Confidence 34555665555544432 567888899999999999985 78999999865 3344
Q ss_pred ccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCc
Q 039497 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471 (642)
Q Consensus 430 l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~ 471 (642)
++... -....++|+|||..+++.+.+ ++|..+|..-..
T Consensus 295 ~~ka~-~~P~~iaWHp~gai~~V~s~q---GelQ~FD~ALsp 332 (545)
T PF11768_consen 295 LAKAE-FIPTLIAWHPDGAIFVVGSEQ---GELQCFDMALSP 332 (545)
T ss_pred eeeec-ccceEEEEcCCCcEEEEEcCC---ceEEEEEeecCc
Confidence 44444 556778999999888877743 377777765443
No 346
>PHA03098 kelch-like protein; Provisional
Probab=92.84 E-value=14 Score=40.15 Aligned_cols=113 Identities=6% Similarity=-0.087 Sum_probs=56.7
Q ss_pred eeEEEEECCCCccccceeeCCCCCCcc-cceeEecCCCEEEEEecCCC-CCCCCceeEEEEeCCCCceEEeeecCCCCCC
Q 039497 460 KNLFVLDAVNGEFNGDIRQLTDGPWID-TMPSWSPKGDLIAFSSNRHN-PDNVEAFSLYVIKPDGSGLRRIHVAGPEGSG 537 (642)
Q Consensus 460 ~~l~~~d~~~g~~~~~~~~l~~~~~~~-~~~~~spdG~~l~~~~~~~~-~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 537 (642)
..++.+|+.+++. ..+...+... ......-+++ |+..+.... ........++++|+.+++.+.+......
T Consensus 406 ~~v~~yd~~t~~W----~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--- 477 (534)
T PHA03098 406 KTVECFSLNTNKW----SKGSPLPISHYGGCAIYHDGK-IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP--- 477 (534)
T ss_pred ceEEEEeCCCCee----eecCCCCccccCceEEEECCE-EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc---
Confidence 4789999998875 5554433211 1223334554 554443221 1001134599999998888776532211
Q ss_pred CcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccC
Q 039497 538 DVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW 597 (642)
Q Consensus 538 ~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~ 597 (642)
+...... ..+++ |++.....+.. ....++.+|..+..-..+..
T Consensus 478 ---r~~~~~~--~~~~~-iyv~GG~~~~~-----------~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 478 ---RINASLC--IFNNK-IYVVGGDKYEY-----------YINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred ---cccceEE--EECCE-EEEEcCCcCCc-----------ccceeEEEeCCCCEEEecCC
Confidence 1111222 23555 44443222110 12378888888776555543
No 347
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.74 E-value=3 Score=42.53 Aligned_cols=202 Identities=15% Similarity=0.126 Sum_probs=80.2
Q ss_pred cCCCCEEEE-Eec--CCCceeEEEEECCCCCeeEEee-----cCCceeeeeecCCCEEEEEEcCC------Cccc-----
Q 039497 338 SPDGGLIVF-NHD--FELNAGIKIAKSDGSKRWTLIK-----DRTAFYNSWSPTEKHVIYTSTGP------IFQS----- 398 (642)
Q Consensus 338 spdg~~l~~-~~~--~~~~~~l~~~d~~~~~~~~l~~-----~~~~~~~~~spdg~~l~~~~~~~------~~~~----- 398 (642)
-|+|+.++- ..+ .++...+.++|-++-+...... .....++.|.|--+.++.+..+. .+..
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence 567764443 222 3566789999988766554433 22355778888777665554321 0000
Q ss_pred --CCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCC-CccCcEE--CCCCCeEEEEeCCCCceeEEEEEC-CCCcc
Q 039497 399 --ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETG-NNAFPSC--SPDGKFLVFRSGRSGHKNLFVLDA-VNGEF 472 (642)
Q Consensus 399 --~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~--SpDg~~l~~~~~~~g~~~l~~~d~-~~g~~ 472 (642)
=...+++|++.. .. ..+.|.-++.+ ....+.| .|+..+=+...- -..+||++-. +.|+.
T Consensus 218 ~~yG~~l~vWD~~~--------r~-----~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a--Lss~i~~~~k~~~g~W 282 (461)
T PF05694_consen 218 GKYGHSLHVWDWST--------RK-----LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA--LSSSIWRFYKDDDGEW 282 (461)
T ss_dssp H-S--EEEEEETTT--------TE-----EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE----EEEEEEEE-ETTEE
T ss_pred ccccCeEEEEECCC--------Cc-----EeeEEecCCCCCceEEEEecCCCCccceEEEEe--ccceEEEEEEcCCCCe
Confidence 145788888754 11 33333333211 1223444 444443222221 2346766654 34443
Q ss_pred c-cceeeCCCC-----------------CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC-ceEEeeecCC
Q 039497 473 N-GDIRQLTDG-----------------PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS-GLRRIHVAGP 533 (642)
Q Consensus 473 ~-~~~~~l~~~-----------------~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~ 533 (642)
. +.+..+... +.-+..+..|.|.++||+..--.+ .|..||+..- +.+++-+--.
T Consensus 283 ~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~G-------dvrqYDISDP~~Pkl~gqv~l 355 (461)
T PF05694_consen 283 AAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHG-------DVRQYDISDPFNPKLVGQVFL 355 (461)
T ss_dssp EEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTT-------EEEEEE-SSTTS-EEEEEEE-
T ss_pred eeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCC-------cEEEEecCCCCCCcEEeEEEE
Confidence 1 112222211 233566789999999998876443 4899999753 3333322100
Q ss_pred CCCC--C----cc----cccccceEEcCCCCEEEEEEe
Q 039497 534 EGSG--D----VD----RERINHVCFSADGEWLLFTAN 561 (642)
Q Consensus 534 ~~~~--~----~~----~~~~~~~~~S~Dg~~l~~~~~ 561 (642)
.+.. . .. +..+.-+..|.||++||++..
T Consensus 356 GG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 356 GGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 0000 0 00 012346789999999999875
No 348
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=92.59 E-value=3 Score=42.46 Aligned_cols=261 Identities=10% Similarity=0.047 Sum_probs=120.6
Q ss_pred eeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEee---------cCCCCcccCCeecC--CCCEEEEEEeecC
Q 039497 236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT---------LNPNFHHYNPFVSA--NSEFIGYHRFRGE 304 (642)
Q Consensus 236 ~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~---------~~~~~~~~~~~~sp--Dg~~l~~~~~~~~ 304 (642)
.+|..+...+..+.|...|..|+. ++....+.+||.. .++...+.+..|-| +.+.|+....++.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~S-----gSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLAS-----GSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred hcccCCCCccceeeecccCceeec-----cCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 445555556667777788888887 4455588899982 23333344444554 3344555555444
Q ss_pred CCCCCcccceEeeccCCCc-eeEEeee--CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-----cC---
Q 039497 305 STEGQSTIPHLEPVASPVK-ELRMLRL--NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-----DR--- 373 (642)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-----~~--- 373 (642)
.. .......+... ...+.+. .....+.-|+.-+-++.. .....++-+|+..+....... ..
T Consensus 211 vr------~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~--geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v 282 (559)
T KOG1334|consen 211 VR------VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSC--GEDAVVFHIDLRQDVPAEKFVCREADEKERV 282 (559)
T ss_pred ee------eeeeccccceecceecccccCccceeeecCCCCCccccc--ccccceeeeeeccCCccceeeeeccCCccce
Confidence 21 00011111100 0011111 112233444444333322 223444555555444332221 11
Q ss_pred CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEE
Q 039497 374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453 (642)
Q Consensus 374 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~ 453 (642)
....++..|-....+.+. ..+.-.++|+...- +.+ ...+.--.+.+..|.......+..+++|.+|..|+..
T Consensus 283 ~L~~Ia~~P~nt~~faVg------G~dqf~RvYD~R~~-~~e-~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS 354 (559)
T KOG1334|consen 283 GLYTIAVDPRNTNEFAVG------GSDQFARVYDQRRI-DKE-ENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS 354 (559)
T ss_pred eeeeEecCCCCccccccC------Chhhhhhhhcccch-hhc-cccchhhhcCCccccccCcccceeEEecCCccceeee
Confidence 234455555444333332 12334455554320 000 0011000002222222222567778999999888777
Q ss_pred eCCCCceeEEEEECCC--Cccc---c----ceeeCCCCC---Ccccce-eEecCCCEEEEEecCCCCCCCCceeEEEEeC
Q 039497 454 SGRSGHKNLFVLDAVN--GEFN---G----DIRQLTDGP---WIDTMP-SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP 520 (642)
Q Consensus 454 ~~~~g~~~l~~~d~~~--g~~~---~----~~~~l~~~~---~~~~~~-~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~ 520 (642)
.++. .||++...- |..+ . .++++..+. ..+..+ .|-|...+++-.++.+. |++|+-
T Consensus 355 YnDe---~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGh--------IFiW~K 423 (559)
T KOG1334|consen 355 YNDE---DIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGH--------IFIWDK 423 (559)
T ss_pred eccc---ceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccce--------EEEEec
Confidence 6543 678775432 3110 0 011111111 122333 67888888887777764 999998
Q ss_pred CCCceEEe
Q 039497 521 DGSGLRRI 528 (642)
Q Consensus 521 ~~~~~~~l 528 (642)
+++++-++
T Consensus 424 ~t~eii~~ 431 (559)
T KOG1334|consen 424 KTGEIIRF 431 (559)
T ss_pred chhHHHHH
Confidence 88765433
No 349
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=92.54 E-value=1.2 Score=49.35 Aligned_cols=140 Identities=14% Similarity=0.016 Sum_probs=90.6
Q ss_pred EECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC
Q 039497 442 SCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD 521 (642)
Q Consensus 442 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~ 521 (642)
.+|++.-++++.+- -.+|+.|....-+. ...+..+.+....+.||-||++|+..+++.. +.+|+++
T Consensus 140 g~s~~~~~i~~gsv---~~~iivW~~~~dn~---p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRs--------iRlW~i~ 205 (967)
T KOG0974|consen 140 GDSAEELYIASGSV---FGEIIVWKPHEDNK---PIRLKGHEGSIFSIVTSLDGRYIASVSDDRS--------IRLWPID 205 (967)
T ss_pred eccCcEEEEEeccc---cccEEEEeccccCC---cceecccCCceEEEEEccCCcEEEEEecCcc--------eeeeecc
Confidence 34555445554442 23677777762222 3457778888889999999999999988765 8888988
Q ss_pred CCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCC-
Q 039497 522 GSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGY- 600 (642)
Q Consensus 522 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~- 600 (642)
+.+.-..+-.++.. ++.+..|.|. +|+....+- -..+|..++.++..+..+.+
T Consensus 206 s~~~~~~~~fgHsa-------Rvw~~~~~~n--~i~t~gedc-----------------tcrvW~~~~~~l~~y~~h~g~ 259 (967)
T KOG0974|consen 206 SREVLGCTGFGHSA-------RVWACCFLPN--RIITVGEDC-----------------TCRVWGVNGTQLEVYDEHSGK 259 (967)
T ss_pred cccccCcccccccc-------eeEEEEeccc--eeEEeccce-----------------EEEEEecccceehhhhhhhhc
Confidence 87665545456666 7788889887 565555432 34444566666665555432
Q ss_pred CCCCcEEecCCceEEeecCCC
Q 039497 601 ENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 601 ~~~~~~~s~dg~~~~~~~~~~ 621 (642)
.+...+..++.-+.++..+.+
T Consensus 260 ~iw~~~~~~~~~~~vT~g~Ds 280 (967)
T KOG0974|consen 260 GIWKIAVPIGVIIKVTGGNDS 280 (967)
T ss_pred ceeEEEEcCCceEEEeeccCc
Confidence 345667766666666665544
No 350
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.36 E-value=11 Score=38.03 Aligned_cols=183 Identities=17% Similarity=0.080 Sum_probs=90.2
Q ss_pred CCccCcEECCCCCeEEEEeCCCC---ceeEEEEECCC--Cccc----cceeeCCCCCC--------cccceeEecCCCEE
Q 039497 436 GNNAFPSCSPDGKFLVFRSGRSG---HKNLFVLDAVN--GEFN----GDIRQLTDGPW--------IDTMPSWSPKGDLI 498 (642)
Q Consensus 436 ~~~~~~~~SpDg~~l~~~~~~~g---~~~l~~~d~~~--g~~~----~~~~~l~~~~~--------~~~~~~~spdG~~l 498 (642)
+....+.+.|++..++..+++.. ...+|...+.. +... .....|....+ ....+++.++|. +
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~-~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS-F 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC-E
Confidence 44566788865555555555432 33566555543 1110 11122222211 334667877776 4
Q ss_pred EEEecCCCCCCCCceeEEEEeCCCCceEEee-ecCCCC-----CCCcccccccceEEcCCCCEEEEEEecCCcccCCCCC
Q 039497 499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH-VAGPEG-----SGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSW 572 (642)
Q Consensus 499 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~-----~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~ 572 (642)
+++...... ......|+.++.++...+.+. +..... ........+..++++|||+.|++.....-....+...
T Consensus 99 ~is~E~~~~-~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRT-GGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccC-CCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 444433200 112467999999855544442 211100 0111123567899999999877665443110000000
Q ss_pred CCCCCCCCcEEEEEcCCCc------eeeccC-----CCCCCCCcEEecCCceEEeecCCC
Q 039497 573 PNQFQPYGDLYVVKLDGSG------LRRLTW-----NGYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 573 ~~~~~~~~~l~~~~~~~~~------~~~lt~-----~~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
. .-.....|+.++..... .-++.. ....+..+.+-+|+++|+--+.+.
T Consensus 178 ~-~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~ 236 (326)
T PF13449_consen 178 P-DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFS 236 (326)
T ss_pred c-ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCC
Confidence 0 00011367888876422 122322 234556789999998887666543
No 351
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=92.27 E-value=14 Score=40.64 Aligned_cols=197 Identities=13% Similarity=0.115 Sum_probs=112.8
Q ss_pred cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeec--CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD--RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412 (642)
Q Consensus 335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~--~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (642)
+.|.--.++|++... ....|-...+.+.+.+.+... .....++...-++.++++.. ...++.+..++-
T Consensus 1030 idfDC~e~mvyWtDv--~g~SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS------~lD~IevA~LdG-- 1099 (1289)
T KOG1214|consen 1030 IDFDCRERMVYWTDV--AGRSISRASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDS------VLDKIEVALLDG-- 1099 (1289)
T ss_pred eecccccceEEEeec--CCCccccccccCCCCceeecccCCCccceeeeeccceeeeecc------ccchhheeecCC--
Confidence 344444555555432 235677778888887766552 22334455455777877763 244555555532
Q ss_pred CCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccceeE
Q 039497 413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSW 491 (642)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~ 491 (642)
. ..+.|....-.....++..+=+..|+++........|-..++++... +.|.+ .-+-.+.+.|
T Consensus 1100 -------~-----~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~Nr----Rilin~DigLPNGLtf 1163 (1289)
T KOG1214|consen 1100 -------S-----ERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENR----RILINTDIGLPNGLTF 1163 (1289)
T ss_pred -------c-----eeeEEEeecccCcceEEeecccCceeeccccccCCcceeeccCCccc----eEEeecccCCCCCcee
Confidence 1 22333322214455677778888898887655667788888874332 44433 3344466788
Q ss_pred ecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCC
Q 039497 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS 571 (642)
Q Consensus 492 spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~ 571 (642)
.|..+.|-+...... +|--...++...+.+.. +.. ...++..+++.+|++.-+.+
T Consensus 1164 dpfs~~LCWvDAGt~-------rleC~~p~g~gRR~i~~-~Lq----------YPF~itsy~~~fY~TDWk~n------- 1218 (1289)
T KOG1214|consen 1164 DPFSKLLCWVDAGTK-------RLECTLPDGTGRRVIQN-NLQ----------YPFSITSYADHFYHTDWKRN------- 1218 (1289)
T ss_pred CcccceeeEEecCCc-------ceeEecCCCCcchhhhh-ccc----------CceeeeeccccceeeccccC-------
Confidence 888887776665442 24444444433333322 211 34566778888888875432
Q ss_pred CCCCCCCCCcEEEEEcCCCc
Q 039497 572 WPNQFQPYGDLYVVKLDGSG 591 (642)
Q Consensus 572 ~~~~~~~~~~l~~~~~~~~~ 591 (642)
.|..+++-+++
T Consensus 1219 ---------~vvsv~~~~~~ 1229 (1289)
T KOG1214|consen 1219 ---------GVVSVNKHSGQ 1229 (1289)
T ss_pred ---------ceEEeeccccc
Confidence 78888776654
No 352
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=92.12 E-value=5.4 Score=44.60 Aligned_cols=150 Identities=15% Similarity=0.049 Sum_probs=90.1
Q ss_pred EcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCC---ceee--eeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRT---AFYN--SWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 337 ~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~---~~~~--~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
+.-+.++++.... .+.+++++...+....-.. ... .... ..+++.=+++..+ .-+.+.+|....
T Consensus 95 l~~e~k~i~l~~~---~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gs-------v~~~iivW~~~~ 164 (967)
T KOG0974|consen 95 LFEENKKIALVTS---RNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGS-------VFGEIIVWKPHE 164 (967)
T ss_pred hhhhcceEEEEEc---CceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecc-------ccccEEEEeccc
Confidence 3444556666543 4677777776654332222 110 1112 2333333333332 356677777653
Q ss_pred ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcccccee-eCCCCCCcccce
Q 039497 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR-QLTDGPWIDTMP 489 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~-~l~~~~~~~~~~ 489 (642)
+ . ....+..++ +....+.||-||++++..+++ ..+.+|++++++. .. ....++..+...
T Consensus 165 --d------n-----~p~~l~GHe-G~iF~i~~s~dg~~i~s~SdD---RsiRlW~i~s~~~---~~~~~fgHsaRvw~~ 224 (967)
T KOG0974|consen 165 --D------N-----KPIRLKGHE-GSIFSIVTSLDGRYIASVSDD---RSIRLWPIDSREV---LGCTGFGHSARVWAC 224 (967)
T ss_pred --c------C-----CcceecccC-CceEEEEEccCCcEEEEEecC---cceeeeecccccc---cCcccccccceeEEE
Confidence 2 2 344677777 888899999999999988854 3677888887764 22 233456667778
Q ss_pred eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE
Q 039497 490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526 (642)
Q Consensus 490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 526 (642)
.+.|. +|+..+.+-. +.+|+.++..++
T Consensus 225 ~~~~n--~i~t~gedct--------crvW~~~~~~l~ 251 (967)
T KOG0974|consen 225 CFLPN--RIITVGEDCT--------CRVWGVNGTQLE 251 (967)
T ss_pred Eeccc--eeEEeccceE--------EEEEecccceeh
Confidence 88988 6776665543 666766665555
No 353
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.95 E-value=9.9 Score=38.76 Aligned_cols=139 Identities=13% Similarity=0.042 Sum_probs=83.9
Q ss_pred EEcCCCCEEEEEecCCCceeEEEEECCCCCee-EEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497 336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW-TLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL 412 (642)
Q Consensus 336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~-~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (642)
.|-.|.++..|....++ ..=|+..--+.... .... .+.+.++.||+|.+.|++... +..+.++....
T Consensus 28 vFfDDaNkqlfavrSgg-atgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~-------~~~v~f~nf~~-- 97 (657)
T KOG2377|consen 28 VFFDDANKQLFAVRSGG-ATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRT-------SKTVDFCNFIP-- 97 (657)
T ss_pred eeeccCcceEEEEecCC-eeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEec-------CceEEEEecCC--
Confidence 55566666666544222 22233322222211 1111 567899999999999988864 56777777633
Q ss_pred CCCCCCCCCccccceEEcc----ccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccc
Q 039497 413 DPSDDNNREEIPCDVKILT----KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTM 488 (642)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~ 488 (642)
+ . ....+. ... ..+-.+.|+. ...+++.++. ..++|..+..... ++.+......+..
T Consensus 98 d------~-----~~l~~~~~ck~k~-~~IlGF~W~~-s~e~A~i~~~--G~e~y~v~pekrs----lRlVks~~~nvnW 158 (657)
T KOG2377|consen 98 D------N-----SQLEYTQECKTKN-ANILGFCWTS-STEIAFITDQ--GIEFYQVLPEKRS----LRLVKSHNLNVNW 158 (657)
T ss_pred C------c-----hhhHHHHHhccCc-ceeEEEEEec-CeeEEEEecC--CeEEEEEchhhhh----hhhhhhcccCccE
Confidence 2 1 111111 111 2355678884 4889988763 3588888876444 4666666677888
Q ss_pred eeEecCCCEEEEEec
Q 039497 489 PSWSPKGDLIAFSSN 503 (642)
Q Consensus 489 ~~~spdG~~l~~~~~ 503 (642)
..|.++-+.++..+.
T Consensus 159 y~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 159 YMYCPETAVILLSTT 173 (657)
T ss_pred EEEccccceEeeecc
Confidence 899999887766655
No 354
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=91.83 E-value=8.7 Score=41.02 Aligned_cols=55 Identities=22% Similarity=0.327 Sum_probs=36.6
Q ss_pred eeCCCCCCcccc---eeEecCCCEEEEEecCCCCCCCCceeEEEEeCC-CCceEEeeecCCC
Q 039497 477 RQLTDGPWIDTM---PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD-GSGLRRIHVAGPE 534 (642)
Q Consensus 477 ~~l~~~~~~~~~---~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~ 534 (642)
..|+.+.+.+.. +....--+.++|.+....+ -..+||+.... .|+..+++..+..
T Consensus 494 ~altSgeweVl~r~Gi~VdE~~~LVYf~gt~d~P---lE~hLyvvsye~~g~~~rlt~~g~s 552 (867)
T KOG2281|consen 494 IALTSGEWEVLARHGIWVDEVRKLVYFVGTKDTP---LEHHLYVVSYENPGEIARLTEPGYS 552 (867)
T ss_pred eeecccceeehhhcCeeecccceEEEEEccCCCC---ceeeEEEEEEecCCceeeccCCCcc
Confidence 445555544322 3345555677888777654 77899999997 7888888876543
No 355
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.69 E-value=3.8 Score=40.31 Aligned_cols=160 Identities=19% Similarity=0.290 Sum_probs=81.4
Q ss_pred CEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCC
Q 039497 342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNRE 421 (642)
Q Consensus 342 ~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 421 (642)
+.++|+.+ .+...|.++|+.+++.+++... .+.++....-+.-.+
T Consensus 77 ~~~aYItD-~~~~glIV~dl~~~~s~Rv~~~------~~~~~p~~~~~~i~g---------------------------- 121 (287)
T PF03022_consen 77 DGFAYITD-SGGPGLIVYDLATGKSWRVLHN------SFSPDPDAGPFTIGG---------------------------- 121 (287)
T ss_dssp SEEEEEEE-TTTCEEEEEETTTTEEEEEETC------GCTTS-SSEEEEETT----------------------------
T ss_pred ceEEEEeC-CCcCcEEEEEccCCcEEEEecC------CcceeccccceeccC----------------------------
Confidence 46788776 4456999999999998888653 233333322222211
Q ss_pred ccccceEEccccCCCCccCcEE---CCCCCeEEEEeCCCCceeEEEEECC---CCccc------cceeeCCCCCCcccce
Q 039497 422 EIPCDVKILTKEETGNNAFPSC---SPDGKFLVFRSGRSGHKNLFVLDAV---NGEFN------GDIRQLTDGPWIDTMP 489 (642)
Q Consensus 422 ~~~~~~~~l~~~~~~~~~~~~~---SpDg~~l~~~~~~~g~~~l~~~d~~---~g~~~------~~~~~l~~~~~~~~~~ 489 (642)
....... ....++. ++||++|+|..... ..+|.+..+ ..... ..++.+-.........
T Consensus 122 ----~~~~~~d----g~~gial~~~~~d~r~LYf~~lss--~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~ 191 (287)
T PF03022_consen 122 ----ESFQWPD----GIFGIALSPISPDGRWLYFHPLSS--RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGM 191 (287)
T ss_dssp ----EEEEETT----SEEEEEE-TTSTTS-EEEEEETT---SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEE
T ss_pred ----ceEecCC----CccccccCCCCCCccEEEEEeCCC--CcEEEEEHHHhhCccccccccccccceeccccCCCCceE
Confidence 0011111 1222333 45999999987532 368887752 11110 0112222111123456
Q ss_pred eEecCCCEEEEEecCCCCCCCCceeEEEEeCCC----CceEEeeecCC-CCCCCcccccccceEEcC--CCCEEEEEEec
Q 039497 490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG----SGLRRIHVAGP-EGSGDVDRERINHVCFSA--DGEWLLFTANL 562 (642)
Q Consensus 490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~----~~~~~l~~~~~-~~~~~~~~~~~~~~~~S~--Dg~~l~~~~~~ 562 (642)
+.+++|. |+|+.-..+ .|+.|+.++ .+.+.+..... -. .+..+.+.+ +|. |++.+++
T Consensus 192 ~~D~~G~-ly~~~~~~~-------aI~~w~~~~~~~~~~~~~l~~d~~~l~-------~pd~~~i~~~~~g~-L~v~snr 255 (287)
T PF03022_consen 192 AIDPNGN-LYFTDVEQN-------AIGCWDPDGPYTPENFEILAQDPRTLQ-------WPDGLKIDPEGDGY-LWVLSNR 255 (287)
T ss_dssp EEETTTE-EEEEECCCT-------EEEEEETTTSB-GCCEEEEEE-CC-GS-------SEEEEEE-T--TS--EEEEE-S
T ss_pred EECCCCc-EEEecCCCC-------eEEEEeCCCCcCccchheeEEcCceee-------ccceeeeccccCce-EEEEECc
Confidence 7888775 666665443 499999987 34555554322 11 345667766 554 6666543
No 356
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.54 E-value=15 Score=36.13 Aligned_cols=135 Identities=16% Similarity=0.189 Sum_probs=71.6
Q ss_pred eEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC--------------------cccceeEe---cCCCEEEEEecCC
Q 039497 449 FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW--------------------IDTMPSWS---PKGDLIAFSSNRH 505 (642)
Q Consensus 449 ~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~--------------------~~~~~~~s---pdG~~l~~~~~~~ 505 (642)
.++|.++.. ...|.++|+.+|+. ..+..... ....++.+ +||++|||....+
T Consensus 78 ~~aYItD~~-~~glIV~dl~~~~s----~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss 152 (287)
T PF03022_consen 78 GFAYITDSG-GPGLIVYDLATGKS----WRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS 152 (287)
T ss_dssp EEEEEEETT-TCEEEEEETTTTEE----EEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-
T ss_pred eEEEEeCCC-cCcEEEEEccCCcE----EEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC
Confidence 577776543 34899999999885 33322110 01223444 4888888887654
Q ss_pred CCCCCCceeEEEEeCC---CC----------ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCC
Q 039497 506 NPDNVEAFSLYVIKPD---GS----------GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSW 572 (642)
Q Consensus 506 ~~~~~~~~~l~~~d~~---~~----------~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~ 572 (642)
. ++|.+..+ .. +.+.+-... . .....+.+++|. |||+.-..
T Consensus 153 ~-------~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~--~-------~s~g~~~D~~G~-ly~~~~~~--------- 206 (287)
T PF03022_consen 153 R-------KLYRVPTSVLRDPSLSDAQALASQVQDLGDKG--S-------QSDGMAIDPNGN-LYFTDVEQ--------- 206 (287)
T ss_dssp S-------EEEEEEHHHHCSTT--HHH-HHHT-EEEEE------------SECEEEEETTTE-EEEEECCC---------
T ss_pred C-------cEEEEEHHHhhCccccccccccccceeccccC--C-------CCceEEECCCCc-EEEecCCC---------
Confidence 3 37776532 11 112221111 1 234577888764 66666443
Q ss_pred CCCCCCCCcEEEEEcCC----CceeeccCCCC---CCCCcEEec--CCceEEeecCCC
Q 039497 573 PNQFQPYGDLYVVKLDG----SGLRRLTWNGY---ENGTPAWHP--GNQLDLGKLRLE 621 (642)
Q Consensus 573 ~~~~~~~~~l~~~~~~~----~~~~~lt~~~~---~~~~~~~s~--dg~~~~~~~~~~ 621 (642)
..|+.|+.++ .....|..... +..++.+.+ +|.+++.+-++.
T Consensus 207 -------~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl~ 257 (287)
T PF03022_consen 207 -------NAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRLQ 257 (287)
T ss_dssp -------TEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S--
T ss_pred -------CeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECcch
Confidence 2899999887 34444554433 345778888 887776655544
No 357
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=91.14 E-value=0.39 Score=30.53 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=28.8
Q ss_pred eeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEe
Q 039497 476 IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIK 519 (642)
Q Consensus 476 ~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d 519 (642)
+..+..+...+..++|+|+++.|+..+.++. |++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~--------i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGT--------IRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSE--------EEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCE--------EEEEC
Confidence 4556667778899999999999999887764 77775
No 358
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=91.12 E-value=9.7 Score=40.93 Aligned_cols=39 Identities=31% Similarity=0.555 Sum_probs=26.3
Q ss_pred EEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEE
Q 039497 515 LYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560 (642)
Q Consensus 515 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~ 560 (642)
++..+...++++++....... .+.-+.|+|||+.|++.-
T Consensus 482 ~~~~~~~~g~~~rf~~~P~ga-------E~tG~~fspDg~tlFvni 520 (524)
T PF05787_consen 482 VWAYDPDTGELKRFLVGPNGA-------EITGPCFSPDGRTLFVNI 520 (524)
T ss_pred eeeccccccceeeeccCCCCc-------ccccceECCCCCEEEEEE
Confidence 445566667777766433222 567899999999987754
No 359
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=90.79 E-value=9.5 Score=37.26 Aligned_cols=169 Identities=9% Similarity=0.092 Sum_probs=91.0
Q ss_pred CCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCC-CCeEEEEeCCCCceeEEEEECCCCccccceee
Q 039497 400 RATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD-GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ 478 (642)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD-g~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~ 478 (642)
.+.++||+..+ ++ ..+.+...+ .....+.|..+ +-..++...-+| .|.+||+.+... .....
T Consensus 49 ngsv~lyd~~t--------g~-----~l~~fk~~~-~~~N~vrf~~~ds~h~v~s~ssDG--~Vr~wD~Rs~~e-~a~~~ 111 (376)
T KOG1188|consen 49 NGSVRLYDKGT--------GQ-----LLEEFKGPP-ATTNGVRFISCDSPHGVISCSSDG--TVRLWDIRSQAE-SARIS 111 (376)
T ss_pred CCeEEEEeccc--------hh-----hhheecCCC-CcccceEEecCCCCCeeEEeccCC--eEEEEEeecchh-hhhee
Confidence 67888888766 33 444554444 44445566543 445555554444 677777765432 00112
Q ss_pred CCCCCCcccceeEec--CCCEEEEEecCCCCCCCCceeEEEEeCCCCce--EEeeecCCCCCCCcccccccceEEcCCCC
Q 039497 479 LTDGPWIDTMPSWSP--KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL--RRIHVAGPEGSGDVDRERINHVCFSADGE 554 (642)
Q Consensus 479 l~~~~~~~~~~~~sp--dG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~ 554 (642)
.+..+. .....+.- .++.|+....... ....|++||+...+. +.+. ..+.. .++.+.|.|..-
T Consensus 112 ~~~~~~-~~f~~ld~nck~~ii~~GtE~~~----s~A~v~lwDvR~~qq~l~~~~-eSH~D-------DVT~lrFHP~~p 178 (376)
T KOG1188|consen 112 WTQQSG-TPFICLDLNCKKNIIACGTELTR----SDASVVLWDVRSEQQLLRQLN-ESHND-------DVTQLRFHPSDP 178 (376)
T ss_pred ccCCCC-CcceEeeccCcCCeEEecccccc----CceEEEEEEeccccchhhhhh-hhccC-------cceeEEecCCCC
Confidence 222221 12223333 4455554433221 456799999875433 2222 23333 478899999776
Q ss_pred EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC----ceeeccCCCCCCCCcEEecCC--ceE
Q 039497 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS----GLRRLTWNGYENGTPAWHPGN--QLD 614 (642)
Q Consensus 555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~lt~~~~~~~~~~~s~dg--~~~ 614 (642)
-++.+..-.+. +-++|+... .+..+..++..+..+.|+.++ +.+
T Consensus 179 nlLlSGSvDGL----------------vnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~ 228 (376)
T KOG1188|consen 179 NLLLSGSVDGL----------------VNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIM 228 (376)
T ss_pred CeEEeecccce----------------EEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEE
Confidence 66666554443 334454432 244445566667889999998 544
No 360
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=90.60 E-value=16 Score=34.90 Aligned_cols=188 Identities=14% Similarity=0.141 Sum_probs=97.7
Q ss_pred EEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCC
Q 039497 336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414 (642)
Q Consensus 336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 414 (642)
.+..||. |+-....-+...|..+|+++++..+... +.....--..--+.+|+-.... .+...+|+.+.
T Consensus 51 ~~~~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk------~~~~f~yd~~t---- 119 (264)
T PF05096_consen 51 EFLDDGT-LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK------EGTGFVYDPNT---- 119 (264)
T ss_dssp EEEETTE-EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS------SSEEEEEETTT----
T ss_pred EecCCCE-EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec------CCeEEEEcccc----
Confidence 4545553 3333334677899999999998655444 3332222222225567777643 55566666532
Q ss_pred CCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC--CCCCC---cccce
Q 039497 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL--TDGPW---IDTMP 489 (642)
Q Consensus 415 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l--~~~~~---~~~~~ 489 (642)
-+ ....+.-.. .-+.++ .||+.|+.+. |...|+.+|.++=+. .+.+ +.... ..+..
T Consensus 120 -----l~----~~~~~~y~~--EGWGLt--~dg~~Li~SD---GS~~L~~~dP~~f~~---~~~i~V~~~g~pv~~LNEL 180 (264)
T PF05096_consen 120 -----LK----KIGTFPYPG--EGWGLT--SDGKRLIMSD---GSSRLYFLDPETFKE---VRTIQVTDNGRPVSNLNEL 180 (264)
T ss_dssp -----TE----EEEEEE-SS--S--EEE--ECSSCEEEE----SSSEEEEE-TTT-SE---EEEEE-EETTEE---EEEE
T ss_pred -----ce----EEEEEecCC--cceEEE--cCCCEEEEEC---CccceEEECCcccce---EEEEEEEECCEECCCcEeE
Confidence 10 233332221 222333 6888877654 667999999876554 2332 22221 23345
Q ss_pred eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-------CCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497 490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-------PEGSGDVDRERINHVCFSADGEWLLFTANL 562 (642)
Q Consensus 490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~ 562 (642)
.|- +|. |+..-- ....|.++|..+|+...+.... .......+..-.+-++|.|.++.|+++...
T Consensus 181 E~i-~G~-IyANVW-------~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 181 EYI-NGK-IYANVW-------QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp EEE-TTE-EEEEET-------TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred EEE-cCE-EEEEeC-------CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 565 563 433322 2346999999999887655320 000000001134678999999999888754
No 361
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=89.88 E-value=24 Score=38.84 Aligned_cols=181 Identities=13% Similarity=0.093 Sum_probs=104.1
Q ss_pred cCCCCEEEEEecCCCceeEEEEECCCCCeeE------Eee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 338 SPDGGLIVFNHDFELNAGIKIAKSDGSKRWT------LIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 338 spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~------l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
++-|.+|+|.. ..+|..+.+++.+..+ |.. ...+..+.|.=-.+.++++.- ..-.|-...+
T Consensus 987 ~~~gt~LL~aq----g~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv--------~g~SI~rasL 1054 (1289)
T KOG1214|consen 987 PSVGTFLLYAQ----GQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDV--------AGRSISRASL 1054 (1289)
T ss_pred CCCcceEEEec----cceEEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeec--------CCCccccccc
Confidence 45578888854 4788888887765433 111 344556677666666666542 1122222333
Q ss_pred ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC-CCCCCcccce
Q 039497 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL-TDGPWIDTMP 489 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l-~~~~~~~~~~ 489 (642)
+ ++ +.+.+....-.....+++.--++-|+++........+-++| |+. .+.| +..-.+...+
T Consensus 1055 --~-----G~-----Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~Ld---G~~---rkvLf~tdLVNPR~i 1116 (1289)
T KOG1214|consen 1055 --E-----GA-----EPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLD---GSE---RKVLFYTDLVNPRAI 1116 (1289)
T ss_pred --c-----CC-----CCceeecccCCCccceeeeeccceeeeeccccchhheeecC---Cce---eeEEEeecccCcceE
Confidence 2 22 33333332212333455544567777776544444444444 332 2333 3333344567
Q ss_pred eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEe
Q 039497 490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN 561 (642)
Q Consensus 490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~ 561 (642)
...+=+..||++.-.. ....|-..++++++.+.+...+.. -...+.|.|..+.|.+...
T Consensus 1117 v~D~~rgnLYwtDWnR-----enPkIets~mDG~NrRilin~Dig--------LPNGLtfdpfs~~LCWvDA 1175 (1289)
T KOG1214|consen 1117 VVDPIRGNLYWTDWNR-----ENPKIETSSMDGENRRILINTDIG--------LPNGLTFDPFSKLLCWVDA 1175 (1289)
T ss_pred EeecccCceeeccccc-----cCCcceeeccCCccceEEeecccC--------CCCCceeCcccceeeEEec
Confidence 7888788888876543 345688899999888777664432 3456889999888877754
No 362
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.67 E-value=24 Score=35.46 Aligned_cols=110 Identities=17% Similarity=0.178 Sum_probs=62.8
Q ss_pred eeEEEEECCCCCeeEEe----------------ecCCceeeeeecCCCEEEEEEcCCCcccCCC-------eEEEEEEEe
Q 039497 354 AGIKIAKSDGSKRWTLI----------------KDRTAFYNSWSPTEKHVIYTSTGPIFQSERA-------TVQIARVSF 410 (642)
Q Consensus 354 ~~l~~~d~~~~~~~~l~----------------~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~-------~~~l~~~~~ 410 (642)
..|+.++.++.....+. .+.....++++|||+.|+.+........... ..+|+.++.
T Consensus 112 p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~ 191 (326)
T PF13449_consen 112 PRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDP 191 (326)
T ss_pred CEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecC
Confidence 77888887754433321 1456778999999998888776543322222 266777765
Q ss_pred ecCCCCCCCCCccccceEEcccc----CCCCccCcEECCCCCeEEEEeC----CCCceeEEEEECCC
Q 039497 411 QLDPSDDNNREEIPCDVKILTKE----ETGNNAFPSCSPDGKFLVFRSG----RSGHKNLFVLDAVN 469 (642)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~SpDg~~l~~~~~----~~g~~~l~~~d~~~ 469 (642)
... +.....-..++... ....+..+.+-+|++.|+.... ......||.+++..
T Consensus 192 ~~~------~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 192 KTP------GEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred CCC------CccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEccc
Confidence 111 10000011222210 1245667888899987666543 22356899999764
No 363
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=89.24 E-value=34 Score=36.59 Aligned_cols=51 Identities=12% Similarity=0.036 Sum_probs=35.1
Q ss_pred eeecCCcEEEEEEeccCCceeeEEEEEeecCCCC----cc-cCCeecCCCCEEEEE
Q 039497 249 AAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNF----HH-YNPFVSANSEFIGYH 299 (642)
Q Consensus 249 ~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~----~~-~~~~~spDg~~l~~~ 299 (642)
+.+||++++++.-..+|+....++.+|+.++.-. .. ....|..++..++..
T Consensus 116 s~~~~~~R~l~s~S~gG~D~~~~re~Dlet~~fv~~~~f~~~~~~wld~d~~~~~~ 171 (648)
T COG1505 116 SVLPDGTRLLYSLSIGGSDAGITREFDLETGEFVEEEGFKFPGISWLDDDGVFVSR 171 (648)
T ss_pred eeCCCCCEEEEEecCCCCcceEEEEEEecccccccCCCccccceEEecCCCEEEec
Confidence 3458999999988888888999999999654211 11 125677777544443
No 364
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=88.59 E-value=0.69 Score=29.30 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=29.9
Q ss_pred eeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEE
Q 039497 36 EHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQ 73 (642)
Q Consensus 36 ~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~ 73 (642)
...+..|.+......|+ |+++.|+ ++..++...||.
T Consensus 4 ~~~~~~h~~~i~~i~~~-~~~~~~~-s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWS-PDGNFLA-SGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEE-TTSSEEE-EEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEe-cccccce-eeCCCCEEEEEC
Confidence 46788999999999999 9999888 555688888873
No 365
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.25 E-value=17 Score=39.84 Aligned_cols=169 Identities=14% Similarity=0.137 Sum_probs=89.5
Q ss_pred CCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCC
Q 039497 341 GGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR 420 (642)
Q Consensus 341 g~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 420 (642)
++.++|... .+.+++++.++.....+..... .-+|++++.++. ++.+.|..+.. +.
T Consensus 49 ~~~~~~GtH---~g~v~~~~~~~~~~~~~~~s~~------~~~Gey~asCS~-------DGkv~I~sl~~--------~~ 104 (846)
T KOG2066|consen 49 DKFFALGTH---RGAVYLTTCQGNPKTNFDHSSS------ILEGEYVASCSD-------DGKVVIGSLFT--------DD 104 (846)
T ss_pred cceeeeccc---cceEEEEecCCccccccccccc------ccCCceEEEecC-------CCcEEEeeccC--------Cc
Confidence 566777433 3567777776654121211111 457888888874 56666666544 12
Q ss_pred CccccceEEccccCCCCccCcEECCC-----CCeEEEEeCCCCceeEEEEECC-CCccccceeeCCCCCCcccceeEecC
Q 039497 421 EEIPCDVKILTKEETGNNAFPSCSPD-----GKFLVFRSGRSGHKNLFVLDAV-NGEFNGDIRQLTDGPWIDTMPSWSPK 494 (642)
Q Consensus 421 ~~~~~~~~~l~~~~~~~~~~~~~SpD-----g~~l~~~~~~~g~~~l~~~d~~-~g~~~~~~~~l~~~~~~~~~~~~spd 494 (642)
....+.-. .....++++|| .++++ +... ..|+++.-. =|.. ....+....+.+..+.|.
T Consensus 105 -----~~~~~df~--rpiksial~Pd~~~~~sk~fv-~GG~---aglvL~er~wlgnk--~~v~l~~~eG~I~~i~W~-- 169 (846)
T KOG2066|consen 105 -----EITQYDFK--RPIKSIALHPDFSRQQSKQFV-SGGM---AGLVLSERNWLGNK--DSVVLSEGEGPIHSIKWR-- 169 (846)
T ss_pred -----cceeEecC--CcceeEEeccchhhhhhhhee-ecCc---ceEEEehhhhhcCc--cceeeecCccceEEEEec--
Confidence 22323222 34566788887 23333 2222 225554421 0111 023456667778888887
Q ss_pred CCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEE
Q 039497 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560 (642)
Q Consensus 495 G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~ 560 (642)
|++|+++++.+ +.+||+..++.-...+..... ..+-....++.|.++.+ |+..-
T Consensus 170 g~lIAWand~G---------v~vyd~~~~~~l~~i~~p~~~--~R~e~fpphl~W~~~~~-LVIGW 223 (846)
T KOG2066|consen 170 GNLIAWANDDG---------VKVYDTPTRQRLTNIPPPSQS--VRPELFPPHLHWQDEDR-LVIGW 223 (846)
T ss_pred CcEEEEecCCC---------cEEEeccccceeeccCCCCCC--CCcccCCCceEecCCCe-EEEec
Confidence 89999999877 788998665432222211111 01111335778887654 55443
No 366
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=88.07 E-value=9.9 Score=38.96 Aligned_cols=67 Identities=15% Similarity=-0.067 Sum_probs=34.1
Q ss_pred CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC----------------CCCcccceeEecCCCEEE
Q 039497 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD----------------GPWIDTMPSWSPKGDLIA 499 (642)
Q Consensus 436 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~----------------~~~~~~~~~~spdG~~l~ 499 (642)
..+..+.+|.|.|+|++..--.| +|..+|+..-..++..-++.- ..+....++.|-||++||
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~G--dvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlY 389 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHG--DVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLY 389 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTT--EEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEE
T ss_pred CceEeEEEccCCCEEEEEcccCC--cEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEE
Confidence 35678899999999999987554 888999876544211111110 011224568899999999
Q ss_pred EEecC
Q 039497 500 FSSNR 504 (642)
Q Consensus 500 ~~~~~ 504 (642)
++++-
T Consensus 390 vTnSL 394 (461)
T PF05694_consen 390 VTNSL 394 (461)
T ss_dssp EE---
T ss_pred EEeec
Confidence 98763
No 367
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=88.07 E-value=4 Score=42.41 Aligned_cols=70 Identities=7% Similarity=0.073 Sum_probs=44.0
Q ss_pred eEeeCCeEEEEEecCCCceEEEEEe---cCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEE
Q 039497 197 TWSGDSTIYFHRQADDGWWSIFRVS---FPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI 273 (642)
Q Consensus 197 ~wspdg~~~~~~~~~~g~~~l~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~ 273 (642)
.+.|-.-.+++. .++|..++|.+. .... .+.+....+-.+...+...+++++|+.++....++ .|+.
T Consensus 301 ~~~~sep~lit~-sed~~lk~WnLqk~~~s~~----~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg-----~I~~ 370 (577)
T KOG0642|consen 301 AFHPSEPVLITA-SEDGTLKLWNLQKAKKSAE----KDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG-----TIRC 370 (577)
T ss_pred hcCCCCCeEEEe-ccccchhhhhhcccCCccc----cceeeeEEEecccCceEEEEecCCceEEEeeccCc-----eeee
Confidence 444444566666 578888888772 1121 12223334455666777788899999888855544 8899
Q ss_pred EEe
Q 039497 274 YDL 276 (642)
Q Consensus 274 ~d~ 276 (642)
|.+
T Consensus 371 w~~ 373 (577)
T KOG0642|consen 371 WNL 373 (577)
T ss_pred ecc
Confidence 966
No 368
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=87.93 E-value=57 Score=37.95 Aligned_cols=80 Identities=8% Similarity=0.025 Sum_probs=48.7
Q ss_pred cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCc---EECCCCC
Q 039497 372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFP---SCSPDGK 448 (642)
Q Consensus 372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~SpDg~ 448 (642)
.+.+.+++.+|-+.+++..+. .+.+.+|++.+ . - .......+......++ -+.|...
T Consensus 1195 hG~vTSi~idp~~~WlviGts-------~G~l~lWDLRF--~------~-----~i~sw~~P~~~~i~~v~~~~~~~~~S 1254 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTS-------RGQLVLWDLRF--R------V-----PILSWEHPARAPIRHVWLCPTYPQES 1254 (1431)
T ss_pred ccceeEEEecCCceEEEEecC-------CceEEEEEeec--C------c-----eeecccCcccCCcceEEeeccCCCCc
Confidence 567889999999998888764 67899999988 2 1 1111111110122222 2344455
Q ss_pred eEEEEeCCCCceeEEEEECCCCcc
Q 039497 449 FLVFRSGRSGHKNLFVLDAVNGEF 472 (642)
Q Consensus 449 ~l~~~~~~~g~~~l~~~d~~~g~~ 472 (642)
.+++++.. +...|-.|+..+|..
T Consensus 1255 ~~vs~~~~-~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1255 VSVSAGSS-SNNEVSTWNMETGLR 1277 (1431)
T ss_pred eEEEeccc-CCCceeeeecccCcc
Confidence 66665542 455788888887753
No 369
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=87.52 E-value=36 Score=34.72 Aligned_cols=144 Identities=14% Similarity=0.196 Sum_probs=75.3
Q ss_pred ceeEEEEECCCCCeeEEeecCCceee----eeecCCCE--EEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccc
Q 039497 353 NAGIKIAKSDGSKRWTLIKDRTAFYN----SWSPTEKH--VIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD 426 (642)
Q Consensus 353 ~~~l~~~d~~~~~~~~l~~~~~~~~~----~~spdg~~--l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 426 (642)
...|+++|+++.+...+.. +....+ -|.-+|+. |+.++.+. .+...+.+|.++. + .+ .
T Consensus 77 ~~GL~VYdL~Gk~lq~~~~-Gr~NNVDvrygf~l~g~~vDlavas~R~---~g~n~l~~f~id~--~-----~g-----~ 140 (381)
T PF02333_consen 77 KGGLYVYDLDGKELQSLPV-GRPNNVDVRYGFPLNGKTVDLAVASDRS---DGRNSLRLFRIDP--D-----TG-----E 140 (381)
T ss_dssp TTEEEEEETTS-EEEEE-S-S-EEEEEEEEEEEETTEEEEEEEEEE-C---CCT-EEEEEEEET--T-----TT-----E
T ss_pred CCCEEEEcCCCcEEEeecC-CCcceeeeecceecCCceEEEEEEecCc---CCCCeEEEEEecC--C-----CC-----c
Confidence 4689999999988766643 222211 12235665 45555430 1236789999975 2 22 3
Q ss_pred eEEccccC------CCCccCcEE--CC-CCCeEEEEeCCCCceeEEEEEC-CCCccc-cceeeCCCCCCcccceeEecCC
Q 039497 427 VKILTKEE------TGNNAFPSC--SP-DGKFLVFRSGRSGHKNLFVLDA-VNGEFN-GDIRQLTDGPWIDTMPSWSPKG 495 (642)
Q Consensus 427 ~~~l~~~~------~~~~~~~~~--Sp-Dg~~l~~~~~~~g~~~l~~~d~-~~g~~~-~~~~~l~~~~~~~~~~~~spdG 495 (642)
.+.+.... ....+.+.+ +| +|+..+|...++|..+-|.+.. ..|... ..++.+.-.+ ....++....-
T Consensus 141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s-Q~EGCVVDDe~ 219 (381)
T PF02333_consen 141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS-QPEGCVVDDET 219 (381)
T ss_dssp EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS--EEEEEEETTT
T ss_pred ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC-cceEEEEeccc
Confidence 44443211 011223332 43 6888888888888666565543 334310 1244444332 45667888777
Q ss_pred CEEEEEecCCCCCCCCceeEEEEeCC
Q 039497 496 DLIAFSSNRHNPDNVEAFSLYVIKPD 521 (642)
Q Consensus 496 ~~l~~~~~~~~~~~~~~~~l~~~d~~ 521 (642)
.+||+...+. .||.|+.+
T Consensus 220 g~LYvgEE~~--------GIW~y~Ae 237 (381)
T PF02333_consen 220 GRLYVGEEDV--------GIWRYDAE 237 (381)
T ss_dssp TEEEEEETTT--------EEEEEESS
T ss_pred CCEEEecCcc--------EEEEEecC
Confidence 7787776554 39999886
No 370
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=87.29 E-value=32 Score=33.97 Aligned_cols=120 Identities=20% Similarity=0.232 Sum_probs=55.1
Q ss_pred eEEEEECCCCccccceeeC-CCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEE-EeCCCCceEEeeecCCCCCCC
Q 039497 461 NLFVLDAVNGEFNGDIRQL-TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYV-IKPDGSGLRRIHVAGPEGSGD 538 (642)
Q Consensus 461 ~l~~~d~~~g~~~~~~~~l-~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~-~d~~~~~~~~l~~~~~~~~~~ 538 (642)
.||+-. +.|+. -+.+ ....+......-++||++|++..... +|+ ++......++... ....
T Consensus 125 ~iy~T~-DgG~t---W~~~~~~~~gs~~~~~r~~dG~~vavs~~G~---------~~~s~~~G~~~w~~~~r-~~~~--- 187 (302)
T PF14870_consen 125 AIYRTT-DGGKT---WQAVVSETSGSINDITRSSDGRYVAVSSRGN---------FYSSWDPGQTTWQPHNR-NSSR--- 187 (302)
T ss_dssp -EEEES-STTSS---EEEEE-S----EEEEEE-TTS-EEEEETTSS---------EEEEE-TT-SS-EEEE---SSS---
T ss_pred cEEEeC-CCCCC---eeEcccCCcceeEeEEECCCCcEEEEECccc---------EEEEecCCCccceEEcc-Cccc---
Confidence 566543 44543 2333 33334556677899999887775543 554 4443223444333 2222
Q ss_pred cccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEc-C-CCce----eeccCCCCCCCCcEEecCCc
Q 039497 539 VDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKL-D-GSGL----RRLTWNGYENGTPAWHPGNQ 612 (642)
Q Consensus 539 ~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~----~~lt~~~~~~~~~~~s~dg~ 612 (642)
++..+.|+||+... +.+ +++ .|+.-+. + .... ..+....+.+.+++|.++++
T Consensus 188 ----riq~~gf~~~~~lw-~~~-~Gg----------------~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~ 245 (302)
T PF14870_consen 188 ----RIQSMGFSPDGNLW-MLA-RGG----------------QIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE 245 (302)
T ss_dssp -----EEEEEE-TTS-EE-EEE-TTT----------------EEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-
T ss_pred ----eehhceecCCCCEE-EEe-CCc----------------EEEEccCCCCccccccccCCcccCceeeEEEEecCCCC
Confidence 67889999997644 444 333 5665551 1 1111 11222334457889999988
Q ss_pred eEEeecC
Q 039497 613 LDLGKLR 619 (642)
Q Consensus 613 ~~~~~~~ 619 (642)
.++...+
T Consensus 246 ~wa~gg~ 252 (302)
T PF14870_consen 246 IWAVGGS 252 (302)
T ss_dssp EEEEEST
T ss_pred EEEEeCC
Confidence 8876533
No 371
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=87.21 E-value=9.5 Score=40.99 Aligned_cols=131 Identities=18% Similarity=0.271 Sum_probs=66.2
Q ss_pred ceeEecCCCEEEEEecCCCC------------CCCCceeEEEEeCCCC-------ceEEeeecCCC--------CCC-Cc
Q 039497 488 MPSWSPKGDLIAFSSNRHNP------------DNVEAFSLYVIKPDGS-------GLRRIHVAGPE--------GSG-DV 539 (642)
Q Consensus 488 ~~~~spdG~~l~~~~~~~~~------------~~~~~~~l~~~d~~~~-------~~~~l~~~~~~--------~~~-~~ 539 (642)
.+.++|....||++...... .....-+||+++..+. ....+...+.. ..+ ..
T Consensus 354 gi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~ 433 (524)
T PF05787_consen 354 GITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSNKCDDN 433 (524)
T ss_pred CeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccccCcccCC
Confidence 45677776677777654431 0223457888887765 33332222210 000 11
Q ss_pred ccccccceEEcCCCCEEEEEEecCCcccC-CCCCC--CC--CCCC--CcEEEEEcCCCceeeccCC--CCCCCCcEEecC
Q 039497 540 DRERINHVCFSADGEWLLFTANLGAVMAE-PVSWP--NQ--FQPY--GDLYVVKLDGSGLRRLTWN--GYENGTPAWHPG 610 (642)
Q Consensus 540 ~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~-~~~~~--~~--~~~~--~~l~~~~~~~~~~~~lt~~--~~~~~~~~~s~d 610 (642)
....+..+.|+++|+.+ +..+.+..... +...+ .. +... ..++..+...++++++... +..+..+.|+||
T Consensus 434 ~f~sPDNL~~d~~G~Lw-I~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~fspD 512 (524)
T PF05787_consen 434 GFASPDNLAFDPDGNLW-IQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITGPCFSPD 512 (524)
T ss_pred CcCCCCceEECCCCCEE-EEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccccceECCC
Confidence 12245678999999844 33332221100 00000 00 0000 0144455666777776653 456789999999
Q ss_pred CceEEeecC
Q 039497 611 NQLDLGKLR 619 (642)
Q Consensus 611 g~~~~~~~~ 619 (642)
++.++-+.+
T Consensus 513 g~tlFvniQ 521 (524)
T PF05787_consen 513 GRTLFVNIQ 521 (524)
T ss_pred CCEEEEEEe
Confidence 988754433
No 372
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=87.20 E-value=24 Score=36.27 Aligned_cols=107 Identities=15% Similarity=0.103 Sum_probs=63.7
Q ss_pred EecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC-----CcceEeeCC--eEE
Q 039497 133 TRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG-----GWPTWSGDS--TIY 205 (642)
Q Consensus 133 ~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-----~~~~wspdg--~~~ 205 (642)
..|..+.+......|...|..|+..+++. .+++|+-..+..+.-. ..+ ....|.|.. +-+
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~------------~vv~WdW~~~~~~l~f-~SGH~~NvfQaKFiP~s~d~ti 202 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDL------------QVVVWDWVSGSPKLSF-ESGHCNNVFQAKFIPFSGDRTI 202 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccc------------eEEeehhhccCccccc-ccccccchhhhhccCCCCCcCc
Confidence 45566677777788999999999888776 6888887665443322 222 123455443 233
Q ss_pred EEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEE
Q 039497 206 FHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAV 259 (642)
Q Consensus 206 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~ 259 (642)
++. +.+|...+-.+...+... ...++..+...+...+.-|+..+-++
T Consensus 203 ~~~-s~dgqvr~s~i~~t~~~e------~t~rl~~h~g~vhklav~p~sp~~f~ 249 (559)
T KOG1334|consen 203 VTS-SRDGQVRVSEILETGYVE------NTKRLAPHEGPVHKLAVEPDSPKPFL 249 (559)
T ss_pred eec-cccCceeeeeecccccee------cceecccccCccceeeecCCCCCccc
Confidence 333 457766666665555421 34556666556666676666554443
No 373
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.88 E-value=28 Score=32.88 Aligned_cols=134 Identities=16% Similarity=0.177 Sum_probs=80.8
Q ss_pred CcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC-cccceeEecCCCEEEEEecCCCCCCCCceeEEEE
Q 039497 440 FPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW-IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVI 518 (642)
Q Consensus 440 ~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~-~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~ 518 (642)
.+..-+|.+.++|.....+ .+.-+|.++|+. ..-+.... ....+-. =|++++..-..+. ||..
T Consensus 15 pLVV~~dskT~v~igSHs~--~~~avd~~sG~~----~We~ilg~RiE~sa~v--vgdfVV~GCy~g~--------lYfl 78 (354)
T KOG4649|consen 15 PLVVCNDSKTLVVIGSHSG--IVIAVDPQSGNL----IWEAILGVRIECSAIV--VGDFVVLGCYSGG--------LYFL 78 (354)
T ss_pred cEEEecCCceEEEEecCCc--eEEEecCCCCcE----EeehhhCceeeeeeEE--ECCEEEEEEccCc--------EEEE
Confidence 3566778888888876544 566789999884 43222211 2222222 3677777776654 9999
Q ss_pred eCCCCc-eEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeecc
Q 039497 519 KPDGSG-LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLT 596 (642)
Q Consensus 519 d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt 596 (642)
+.++|. ....+..+... ..+...+|+..|+..+.++ ..|.+|..+.. +-..-
T Consensus 79 ~~~tGs~~w~f~~~~~vk---------~~a~~d~~~glIycgshd~-----------------~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 79 CVKTGSQIWNFVILETVK---------VRAQCDFDGGLIYCGSHDG-----------------NFYALDPKTYGCVYKSK 132 (354)
T ss_pred Eecchhheeeeeehhhhc---------cceEEcCCCceEEEecCCC-----------------cEEEecccccceEEecc
Confidence 999884 33333333222 4567789999888888765 78888776544 22222
Q ss_pred CCCCCCCCcEEec-CCceEE
Q 039497 597 WNGYENGTPAWHP-GNQLDL 615 (642)
Q Consensus 597 ~~~~~~~~~~~s~-dg~~~~ 615 (642)
-.++-..+|...+ ++.+++
T Consensus 133 cgG~~f~sP~i~~g~~sly~ 152 (354)
T KOG4649|consen 133 CGGGTFVSPVIAPGDGSLYA 152 (354)
T ss_pred cCCceeccceecCCCceEEE
Confidence 2233334666666 554444
No 374
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=86.68 E-value=23 Score=37.49 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=37.0
Q ss_pred ceeEecCCCEEEEEecCCCCCCCCceeEEEE---eCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVI---KPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA 564 (642)
Q Consensus 488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~---d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~ 564 (642)
.+.|.|.|+..+...............++-+ +.+.++.++....... +.+.-+.||||++.|++.-.-.+
T Consensus 504 nl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g-------~E~tG~~FspD~~TlFV~vQHPG 576 (616)
T COG3211 504 NLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIG-------CEFTGPCFSPDGKTLFVNVQHPG 576 (616)
T ss_pred ceEECCCCCEEEEecCCCCccCcccccccccccCCCccceeeeeccCCCc-------ceeecceeCCCCceEEEEecCCC
Confidence 4578888885554433321111112223322 3333444444332221 25678999999999987765443
No 375
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.44 E-value=16 Score=38.27 Aligned_cols=114 Identities=11% Similarity=0.112 Sum_probs=60.3
Q ss_pred cccceeEecCCCEEEEEec-CCCCCCCCceeEEEEeCCCCceEEeeecC------CCCCCCcccccccceEEcCCC----
Q 039497 485 IDTMPSWSPKGDLIAFSSN-RHNPDNVEAFSLYVIKPDGSGLRRIHVAG------PEGSGDVDRERINHVCFSADG---- 553 (642)
Q Consensus 485 ~~~~~~~spdG~~l~~~~~-~~~~~~~~~~~l~~~d~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~~S~Dg---- 553 (642)
....++|.|||+. +++.. .+. |++++..++..+.+.... -++ ....++|+||-
T Consensus 31 ~Pw~maflPDG~l-lVtER~~G~--------I~~v~~~~~~~~~~~~l~~v~~~~ge~-------GLlglal~PdF~~~~ 94 (454)
T TIGR03606 31 KPWALLWGPDNQL-WVTERATGK--------ILRVNPETGEVKVVFTLPEIVNDAQHN-------GLLGLALHPDFMQEK 94 (454)
T ss_pred CceEEEEcCCCeE-EEEEecCCE--------EEEEeCCCCceeeeecCCceeccCCCC-------ceeeEEECCCccccC
Confidence 4467899999974 44443 332 888887655443322110 011 34678888774
Q ss_pred --CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC--c---ee-eccCC---C-CCCCCcEEecCCceEEeecCCC
Q 039497 554 --EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS--G---LR-RLTWN---G-YENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 554 --~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~---~~-~lt~~---~-~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
.+||+.........+ .+ ....|.++.++.. . .+ .+... . -.-..++|.|||.++++..+.+
T Consensus 95 ~n~~lYvsyt~~~~~~~---~~----~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 95 GNPYVYISYTYKNGDKE---LP----NHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred CCcEEEEEEeccCCCCC---cc----CCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC
Confidence 466666533210000 00 1237888776521 1 12 22211 1 1235788999999888766554
No 376
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=86.23 E-value=2.6 Score=43.56 Aligned_cols=82 Identities=21% Similarity=0.229 Sum_probs=59.7
Q ss_pred eeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCC-CCE
Q 039497 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD-GEW 555 (642)
Q Consensus 477 ~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~D-g~~ 555 (642)
..|+.+.+-+..+.|+.||.+|+-.+++. +|.+||.-..++.+....++.. ++..+.|-|- +..
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~--------r~ivWd~~~~KllhsI~TgHta-------NIFsvKFvP~tnnr 108 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDT--------RLIVWDPFEYKLLHSISTGHTA-------NIFSVKFVPYTNNR 108 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcc--------eEEeecchhcceeeeeeccccc-------ceeEEeeeccCCCe
Confidence 66778888889999999999888776654 4999999877777776667766 6777888773 445
Q ss_pred EEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC
Q 039497 556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589 (642)
Q Consensus 556 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 589 (642)
|+++.... ..|+++|++.
T Consensus 109 iv~sgAgD----------------k~i~lfdl~~ 126 (758)
T KOG1310|consen 109 IVLSGAGD----------------KLIKLFDLDS 126 (758)
T ss_pred EEEeccCc----------------ceEEEEeccc
Confidence 55444321 1788888874
No 377
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=86.10 E-value=21 Score=37.39 Aligned_cols=242 Identities=11% Similarity=0.030 Sum_probs=117.8
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEE---E-CCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEE
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIA---K-SDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQI 405 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~---d-~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l 405 (642)
...+.|-.-.|+..+. ++.-.||.+ . -......++.. .+.+.++..+++++.++-... ++.++.
T Consensus 299 ~l~~~~sep~lit~se-d~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~-------Dg~I~~ 370 (577)
T KOG0642|consen 299 ALAFHPSEPVLITASE-DGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI-------DGTIRC 370 (577)
T ss_pred hhhcCCCCCeEEEecc-ccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc-------Cceeee
Confidence 3344554443444333 444444544 1 11223344433 566778899999998877653 789999
Q ss_pred EEEEeecCCC--CCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC-
Q 039497 406 ARVSFQLDPS--DDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG- 482 (642)
Q Consensus 406 ~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~- 482 (642)
|.+...-++- +++.- -...+..+. ..++.+++|+....|+-.+. +..++.|+..... ...+...
T Consensus 371 w~~p~n~dp~ds~dp~v-----l~~~l~Ght-davw~l~~s~~~~~Llscs~---DgTvr~w~~~~~~----~~~f~~~~ 437 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSV-----LSGTLLGHT-DAVWLLALSSTKDRLLSCSS---DGTVRLWEPTEES----PCTFGEPK 437 (577)
T ss_pred eccCCCCCcccccCcch-----hccceeccc-cceeeeeecccccceeeecC---CceEEeeccCCcC----ccccCCcc
Confidence 9876511100 01111 122333444 56677888887777766653 3378888876433 2222221
Q ss_pred -CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEe
Q 039497 483 -PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN 561 (642)
Q Consensus 483 -~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~ 561 (642)
.+....+.+..-.-.+.+.+.+. ....+ +++......++....... +...-.....+++.|.+. +.|++.
T Consensus 438 e~g~Plsvd~~ss~~a~~~~s~~~-----~~~~~--~~~ev~s~~~~~~s~~~~-~~~~~~~in~vVs~~~~~-~~~~~h 508 (577)
T KOG0642|consen 438 EHGYPLSVDRTSSRPAHSLASFRF-----GYTSI--DDMEVVSDLLIFESSASP-GPRRYPQINKVVSHPTAD-ITFTAH 508 (577)
T ss_pred ccCCcceEeeccchhHhhhhhccc-----ccccc--hhhhhhhheeeccccCCC-cccccCccceEEecCCCC-eeEecc
Confidence 12222223221111122222221 11112 222233333333221111 111111334566667664 556655
Q ss_pred cCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497 562 LGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~ 621 (642)
+.. .|-.+|...+. +.-...+.-.+.++++.|+|-+|++....+
T Consensus 509 ed~----------------~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~ 553 (577)
T KOG0642|consen 509 EDR----------------SIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDG 553 (577)
T ss_pred cCC----------------ceecccccccccchheeeccceecceeecCCCceEEeecCCc
Confidence 432 56565655444 333334455567899999999998865544
No 378
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.69 E-value=6.5 Score=42.39 Aligned_cols=163 Identities=13% Similarity=0.108 Sum_probs=88.8
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCe--eEEee--cCCceeeeeecCCCEEE-EEEcCCCcccCCCeEEEEE
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR--WTLIK--DRTAFYNSWSPTEKHVI-YTSTGPIFQSERATVQIAR 407 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~--~~l~~--~~~~~~~~~spdg~~l~-~~~~~~~~~~~~~~~~l~~ 407 (642)
....++|-|+-|+.++ ...++++|++..-. +.+-. ...+.+..|||...+=+ +++. ......+|.
T Consensus 28 ~a~si~p~grdi~lAs----r~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVst------s~qkaiiwn 97 (1081)
T KOG0309|consen 28 NAVSINPSGRDIVLAS----RQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVST------SNQKAIIWN 97 (1081)
T ss_pred cceeeccccchhhhhh----hcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEec------Ccchhhhhh
Confidence 3557899999999855 47899998876543 33332 44566788988754432 3332 244555666
Q ss_pred EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC-CCcc
Q 039497 408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-PWID 486 (642)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~-~~~~ 486 (642)
+.. . +.. .+..+..+....+..+.|.|...-+..+-. -...+..||+.+-.. ....+.. ....
T Consensus 98 lA~--s-----s~~----aIef~lhghsraitd~n~~~q~pdVlatcs--vdt~vh~wd~rSp~~---p~ys~~~w~s~a 161 (1081)
T KOG0309|consen 98 LAK--S-----SSN----AIEFVLHGHSRAITDINFNPQHPDVLATCS--VDTYVHAWDMRSPHR---PFYSTSSWRSAA 161 (1081)
T ss_pred hhc--C-----Ccc----ceEEEEecCccceeccccCCCCCcceeecc--ccccceeeeccCCCc---ceeeeecccccC
Confidence 654 1 111 233332222255667788877665554433 234677788775542 1222211 1123
Q ss_pred cceeEec-CCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497 487 TMPSWSP-KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530 (642)
Q Consensus 487 ~~~~~sp-dG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 530 (642)
..+.|+- |+..++-...+. |++||+.-|.....+.
T Consensus 162 sqVkwnyk~p~vlasshg~~---------i~vwd~r~gs~pl~s~ 197 (1081)
T KOG0309|consen 162 SQVKWNYKDPNVLASSHGND---------IFVWDLRKGSTPLCSL 197 (1081)
T ss_pred ceeeecccCcchhhhccCCc---------eEEEeccCCCcceEEe
Confidence 4567764 444443333222 8999987665544443
No 379
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.63 E-value=11 Score=39.26 Aligned_cols=151 Identities=13% Similarity=0.139 Sum_probs=80.4
Q ss_pred EEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCc
Q 039497 344 IVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREE 422 (642)
Q Consensus 344 l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 422 (642)
|++... .....|+.+|++.|++..-.. ...+.-+.+.||.+.-=...........+. .+++++.+.. +...
T Consensus 347 lil~~~-~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n--~vfriDpRv~-----~~~k 418 (644)
T KOG2395|consen 347 LILMDG-GEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDN--SVFRIDPRVQ-----GKNK 418 (644)
T ss_pred eEeeCC-CCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCC--ceEEeccccc-----Ccce
Confidence 444433 345789999999998776665 444666777777664322222111111123 3444443212 1100
Q ss_pred cc-cceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcccccee-eCCCCCCcccceeEecCCCEEEE
Q 039497 423 IP-CDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR-QLTDGPWIDTMPSWSPKGDLIAF 500 (642)
Q Consensus 423 ~~-~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~-~l~~~~~~~~~~~~spdG~~l~~ 500 (642)
+. ...++.... .....++-.-+| +|+..+.+ | .|.+||-- |.. .+ .|......+.++..+.||++|+.
T Consensus 419 l~~~q~kqy~~k--~nFsc~aTT~sG-~IvvgS~~-G--dIRLYdri-~~~---AKTAlPgLG~~I~hVdvtadGKwil~ 488 (644)
T KOG2395|consen 419 LAVVQSKQYSTK--NNFSCFATTESG-YIVVGSLK-G--DIRLYDRI-GRR---AKTALPGLGDAIKHVDVTADGKWILA 488 (644)
T ss_pred eeeeeccccccc--cccceeeecCCc-eEEEeecC-C--cEEeehhh-hhh---hhhcccccCCceeeEEeeccCcEEEE
Confidence 00 001111111 122334555566 67777643 3 57777753 443 23 34555556788899999999988
Q ss_pred EecCCCCCCCCceeEEEEeCC
Q 039497 501 SSNRHNPDNVEAFSLYVIKPD 521 (642)
Q Consensus 501 ~~~~~~~~~~~~~~l~~~d~~ 521 (642)
+...- |.++++.
T Consensus 489 Tc~ty---------LlLi~t~ 500 (644)
T KOG2395|consen 489 TCKTY---------LLLIDTL 500 (644)
T ss_pred ecccE---------EEEEEEe
Confidence 87643 6666653
No 380
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=84.49 E-value=61 Score=34.63 Aligned_cols=158 Identities=9% Similarity=0.128 Sum_probs=86.0
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEEC--CCCCeeEEeecCCceeeeeecCCC----EEEEEEcCCCcccCCCeEEEEE
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKS--DGSKRWTLIKDRTAFYNSWSPTEK----HVIYTSTGPIFQSERATVQIAR 407 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~--~~~~~~~l~~~~~~~~~~~spdg~----~l~~~~~~~~~~~~~~~~~l~~ 407 (642)
.++|. ||++++.. .|++.+- +-|....+-.-..+..+.|+|-+. .|+.+.. ...+.+|.
T Consensus 24 GlaWT-DGkqVvLT-------~L~l~~gE~kfGds~viGqFEhV~GlsW~P~~~~~~paLLAVQH-------kkhVtVWq 88 (671)
T PF15390_consen 24 GLAWT-DGKQVVLT-------DLQLHNGEPKFGDSKVIGQFEHVHGLSWAPPCTADTPALLAVQH-------KKHVTVWQ 88 (671)
T ss_pred ceEec-CCCEEEEE-------eeeeeCCccccCCccEeeccceeeeeeecCcccCCCCceEEEec-------cceEEEEE
Confidence 34564 77777773 2333321 223333343346678889988532 3333332 67888999
Q ss_pred EEeecCCCCCCCCCc-cccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcc
Q 039497 408 VSFQLDPSDDNNREE-IPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID 486 (642)
Q Consensus 408 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~ 486 (642)
+.. .+. ...+ +......+...-........|+|...-|++...++- .-++-+..+... ++.-.+..+.+
T Consensus 89 L~~--s~~---e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv-SV~~sV~~d~sr----VkaDi~~~G~I 158 (671)
T PF15390_consen 89 LCP--STT---ERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV-SVLPSVHCDSSR----VKADIKTSGLI 158 (671)
T ss_pred ecc--Ccc---ccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce-eEeeeeeeCCce----EEEeccCCceE
Confidence 875 210 0100 000111221111123445689999888877775532 233333334333 23333555677
Q ss_pred cceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC
Q 039497 487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS 523 (642)
Q Consensus 487 ~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~ 523 (642)
....|.+||++|+++-... -+-|+||-..+
T Consensus 159 hCACWT~DG~RLVVAvGSs-------LHSyiWd~~qK 188 (671)
T PF15390_consen 159 HCACWTKDGQRLVVAVGSS-------LHSYIWDSAQK 188 (671)
T ss_pred EEEEecCcCCEEEEEeCCe-------EEEEEecCchh
Confidence 7889999999999987653 56788886544
No 381
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=83.65 E-value=45 Score=35.54 Aligned_cols=61 Identities=21% Similarity=0.357 Sum_probs=38.7
Q ss_pred cceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497 487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL 562 (642)
Q Consensus 487 ~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~ 562 (642)
....|+|....|++...++. .-++-+..++...+.-. ...+ .+....|..||++|++.-..
T Consensus 116 QGCVWHPk~~iL~VLT~~dv------SV~~sV~~d~srVkaDi--~~~G-------~IhCACWT~DG~RLVVAvGS 176 (671)
T PF15390_consen 116 QGCVWHPKKAILTVLTARDV------SVLPSVHCDSSRVKADI--KTSG-------LIHCACWTKDGQRLVVAVGS 176 (671)
T ss_pred CcccccCCCceEEEEecCce------eEeeeeeeCCceEEEec--cCCc-------eEEEEEecCcCCEEEEEeCC
Confidence 45699999998888877652 22333333333333222 3344 56778999999999887643
No 382
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=83.34 E-value=42 Score=31.89 Aligned_cols=149 Identities=11% Similarity=0.073 Sum_probs=75.3
Q ss_pred ceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497 353 NAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL 430 (642)
Q Consensus 353 ~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 430 (642)
...=.++|+.+++.+.+.. +-....-.+.|||+.|...... .+...++++.-.. .+ ..+........+
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~----~G~~~ir~~~p~~-~~-----~~~~w~e~~~~m 114 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDN----DGNKAIRIFTPCT-SD-----GTCDWTESPNDM 114 (243)
T ss_pred eEEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCC----ccccceEEEecCC-CC-----CCCCceECcccc
Confidence 3445667888888887765 3445555788999988766542 2233444444211 01 111100011123
Q ss_pred cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC-CccccceeeCCC---CC--CcccceeEecCCCEEEEEecC
Q 039497 431 TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN-GEFNGDIRQLTD---GP--WIDTMPSWSPKGDLIAFSSNR 504 (642)
Q Consensus 431 ~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~-g~~~~~~~~l~~---~~--~~~~~~~~spdG~~l~~~~~~ 504 (642)
... ........-|||+.|+.........+ .++... +........+.. .. .........|||+.++|....
T Consensus 115 ~~~--RWYpT~~~L~DG~vlIvGG~~~~t~E--~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 115 QSG--RWYPTATTLPDGRVLIVGGSNNPTYE--FWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred cCC--CccccceECCCCCEEEEeCcCCCccc--ccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC
Confidence 333 34455677889998887765432222 223211 110000111111 11 111233668999988877765
Q ss_pred CCCCCCCceeEEEEeCCCCce
Q 039497 505 HNPDNVEAFSLYVIKPDGSGL 525 (642)
Q Consensus 505 ~~~~~~~~~~l~~~d~~~~~~ 525 (642)
. .++|..+.+.
T Consensus 191 s----------~i~d~~~n~v 201 (243)
T PF07250_consen 191 S----------IIYDYKTNTV 201 (243)
T ss_pred c----------EEEeCCCCeE
Confidence 3 6668877654
No 383
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.27 E-value=26 Score=36.68 Aligned_cols=141 Identities=14% Similarity=0.153 Sum_probs=71.2
Q ss_pred CeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce--
Q 039497 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL-- 525 (642)
Q Consensus 448 ~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~-- 525 (642)
+-|++.+.. ....||.+|+..|+. +..-.-. ..+....+.||.+.-=..+. .+--.-..+.|++||+.-...
T Consensus 345 snlil~~~~-~~~~l~klDIE~GKI---VeEWk~~-~di~mv~~t~d~K~~Ql~~e-~TlvGLs~n~vfriDpRv~~~~k 418 (644)
T KOG2395|consen 345 SNLILMDGG-EQDKLYKLDIERGKI---VEEWKFE-DDINMVDITPDFKFAQLTSE-QTLVGLSDNSVFRIDPRVQGKNK 418 (644)
T ss_pred cceEeeCCC-CcCcceeeeccccee---eeEeecc-CCcceeeccCCcchhccccc-ccEEeecCCceEEecccccCcce
Confidence 345555432 235799999999986 3322211 12334455555432111100 000001223499999853211
Q ss_pred EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCC
Q 039497 526 RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGT 604 (642)
Q Consensus 526 ~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~ 604 (642)
-.+........++ .+...+=..+| +|++.+..+ +|-+|+.-+.. .+.|..-+..+..
T Consensus 419 l~~~q~kqy~~k~----nFsc~aTT~sG-~IvvgS~~G-----------------dIRLYdri~~~AKTAlPgLG~~I~h 476 (644)
T KOG2395|consen 419 LAVVQSKQYSTKN----NFSCFATTESG-YIVVGSLKG-----------------DIRLYDRIGRRAKTALPGLGDAIKH 476 (644)
T ss_pred eeeeecccccccc----ccceeeecCCc-eEEEeecCC-----------------cEEeehhhhhhhhhcccccCCceee
Confidence 1111111000000 23444445566 577777665 67777764433 4556655666788
Q ss_pred cEEecCCceEEe
Q 039497 605 PAWHPGNQLDLG 616 (642)
Q Consensus 605 ~~~s~dg~~~~~ 616 (642)
+..+.||+|+++
T Consensus 477 VdvtadGKwil~ 488 (644)
T KOG2395|consen 477 VDVTADGKWILA 488 (644)
T ss_pred EEeeccCcEEEE
Confidence 999999999853
No 384
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=81.28 E-value=37 Score=33.56 Aligned_cols=161 Identities=16% Similarity=0.238 Sum_probs=66.9
Q ss_pred eeEEEEECCCCCeeEE-ee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497 354 AGIKIAKSDGSKRWTL-IK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL 430 (642)
Q Consensus 354 ~~l~~~d~~~~~~~~l-~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 430 (642)
..||. ..++++..+. .. .+.+..+.-++||++|++...+..|. ..+. +.. ...+.
T Consensus 124 G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~---------s~~~--------G~~----~w~~~ 181 (302)
T PF14870_consen 124 GAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYS---------SWDP--------GQT----TWQPH 181 (302)
T ss_dssp --EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEE---------EE-T--------T-S----S-EEE
T ss_pred CcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEE---------EecC--------CCc----cceEE
Confidence 45655 3355544333 22 45567778899999888876432221 1111 111 22333
Q ss_pred cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEE-CCCCcc-ccceeeCCCCCCcccceeEecCCCEEEEEecCCCCC
Q 039497 431 TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLD-AVNGEF-NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD 508 (642)
Q Consensus 431 ~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d-~~~g~~-~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~ 508 (642)
......++..+.|+||+...+.+ +.| +|+.-+ ...++. ......+......+..++|.+++.. +.....+.
T Consensus 182 ~r~~~~riq~~gf~~~~~lw~~~--~Gg--~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~-wa~gg~G~-- 254 (302)
T PF14870_consen 182 NRNSSRRIQSMGFSPDGNLWMLA--RGG--QIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEI-WAVGGSGT-- 254 (302)
T ss_dssp E--SSS-EEEEEE-TTS-EEEEE--TTT--EEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-E-EEEESTT---
T ss_pred ccCccceehhceecCCCCEEEEe--CCc--EEEEccCCCCccccccccCCcccCceeeEEEEecCCCCE-EEEeCCcc--
Confidence 22222577889999997654433 333 676666 222221 0001112223334567799988664 44444442
Q ss_pred CCCceeEEEEeCCCCc-eEEeeec-CCCCCCCcccccccceEEcCCCCEEE
Q 039497 509 NVEAFSLYVIKPDGSG-LRRIHVA-GPEGSGDVDRERINHVCFSADGEWLL 557 (642)
Q Consensus 509 ~~~~~~l~~~d~~~~~-~~~l~~~-~~~~~~~~~~~~~~~~~~S~Dg~~l~ 557 (642)
|+ +..++|+ .++.... .... .+..+.|..+.+-++
T Consensus 255 ------l~-~S~DgGktW~~~~~~~~~~~-------n~~~i~f~~~~~gf~ 291 (302)
T PF14870_consen 255 ------LL-VSTDGGKTWQKDRVGENVPS-------NLYRIVFVNPDKGFV 291 (302)
T ss_dssp ------EE-EESSTTSS-EE-GGGTTSSS----------EEEEEETTEEEE
T ss_pred ------EE-EeCCCCccceECccccCCCC-------ceEEEEEcCCCceEE
Confidence 44 4455554 4443321 2222 456777765544343
No 385
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.18 E-value=31 Score=34.71 Aligned_cols=76 Identities=13% Similarity=0.072 Sum_probs=52.6
Q ss_pred cCCceeeeeecCCCEE-EEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeE
Q 039497 372 DRTAFYNSWSPTEKHV-IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFL 450 (642)
Q Consensus 372 ~~~~~~~~~spdg~~l-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l 450 (642)
...+.+++|||..+-| .+.+. +..+.|.++.. . - ....... . ...++..|--|.+.+
T Consensus 193 g~~IrdlafSp~~~GLl~~asl-------~nkiki~dlet--~------~-----~vssy~a-~-~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASL-------GNKIKIMDLET--S------C-----VVSSYIA-Y-NQIWSCCWDLDERHV 250 (463)
T ss_pred chhhhhhccCccccceeeeecc-------CceEEEEeccc--c------e-----eeeheec-c-CCceeeeeccCCcce
Confidence 4457889999998854 44443 67888888876 2 1 2222222 2 467788999999999
Q ss_pred EEEeCCCCceeEEEEECCCCc
Q 039497 451 VFRSGRSGHKNLFVLDAVNGE 471 (642)
Q Consensus 451 ~~~~~~~g~~~l~~~d~~~g~ 471 (642)
+|+...+| .|+++|+..-+
T Consensus 251 IYaGl~nG--~VlvyD~R~~~ 269 (463)
T KOG1645|consen 251 IYAGLQNG--MVLVYDMRQPE 269 (463)
T ss_pred eEEeccCc--eEEEEEccCCC
Confidence 99987655 89999986433
No 386
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=79.48 E-value=45 Score=33.82 Aligned_cols=138 Identities=14% Similarity=0.211 Sum_probs=76.4
Q ss_pred eEEEEECCCCccccceeeCCCCC----CcccceeEecCCCEEEEEecCCCC---CCCCceeEEEEeCCCCceEEeeecCC
Q 039497 461 NLFVLDAVNGEFNGDIRQLTDGP----WIDTMPSWSPKGDLIAFSSNRHNP---DNVEAFSLYVIKPDGSGLRRIHVAGP 533 (642)
Q Consensus 461 ~l~~~d~~~g~~~~~~~~l~~~~----~~~~~~~~spdG~~l~~~~~~~~~---~~~~~~~l~~~d~~~~~~~~l~~~~~ 533 (642)
+||.|++.+.+. +.+.... ......+..|.|...+|......+ ...-...+|++|+.+.+.++|...+-
T Consensus 99 dLy~Yn~k~~eW----kk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~ 174 (521)
T KOG1230|consen 99 DLYSYNTKKNEW----KKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGG 174 (521)
T ss_pred eeeEEeccccce----eEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCC
Confidence 799999987775 5443321 222334555666444444433221 12334569999999999988875431
Q ss_pred CCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCC-----CCCCcEEe
Q 039497 534 EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGY-----ENGTPAWH 608 (642)
Q Consensus 534 ~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~-----~~~~~~~s 608 (642)
+.+|....-++| -.+.|+|..-.... .+|....+||.+|+++=+-..|...+. .-..++.+
T Consensus 175 ----PS~RSGHRMvaw--K~~lilFGGFhd~n--------r~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vt 240 (521)
T KOG1230|consen 175 ----PSPRSGHRMVAW--KRQLILFGGFHDSN--------RDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVT 240 (521)
T ss_pred ----CCCCccceeEEe--eeeEEEEcceecCC--------CceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEec
Confidence 111222223444 23455555432211 233345599999999877666665332 22345667
Q ss_pred cCCceEEe
Q 039497 609 PGNQLDLG 616 (642)
Q Consensus 609 ~dg~~~~~ 616 (642)
|+|..+|-
T Consensus 241 pqg~i~vy 248 (521)
T KOG1230|consen 241 PQGGIVVY 248 (521)
T ss_pred CCCcEEEE
Confidence 78877663
No 387
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=79.30 E-value=74 Score=32.93 Aligned_cols=140 Identities=18% Similarity=0.135 Sum_probs=71.6
Q ss_pred CcEECCCCCeEEEEeCCCCceeEEEEECCCCccccce-eeCC-CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEE
Q 039497 440 FPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI-RQLT-DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYV 517 (642)
Q Consensus 440 ~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~-~~l~-~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~ 517 (642)
.+..++||+.+++... | .+|+-.-. |+. . +.+. ........+.|.+||..++.. ..+. |+.
T Consensus 243 ~v~~~~dG~~~~vg~~--G--~~~~s~d~-G~~---~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~--------l~~ 305 (398)
T PLN00033 243 TVNRSPDGDYVAVSSR--G--NFYLTWEP-GQP---YWQPHNRASARRIQNMGWRADGGLWLLT-RGGG--------LYV 305 (398)
T ss_pred eEEEcCCCCEEEEECC--c--cEEEecCC-CCc---ceEEecCCCccceeeeeEcCCCCEEEEe-CCce--------EEE
Confidence 3466789888777653 2 56654444 331 1 2222 223345677899999866554 3332 555
Q ss_pred EeCCCCceE--EeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce-ee
Q 039497 518 IKPDGSGLR--RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL-RR 594 (642)
Q Consensus 518 ~d~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~ 594 (642)
-+-.+...+ .+....... .+..+.++.|.+|++. +.....+ -++.- .++++. ++
T Consensus 306 S~d~G~~~~~~~f~~~~~~~----~~~~l~~v~~~~d~~~-~a~G~~G-----------------~v~~s-~D~G~tW~~ 362 (398)
T PLN00033 306 SKGTGLTEEDFDFEEADIKS----RGFGILDVGYRSKKEA-WAAGGSG-----------------ILLRS-TDGGKSWKR 362 (398)
T ss_pred ecCCCCcccccceeecccCC----CCcceEEEEEcCCCcE-EEEECCC-----------------cEEEe-CCCCcceeE
Confidence 443332111 122111110 0013567888888774 4444332 34443 455443 33
Q ss_pred cc---CCCCCCCCcEEecCCceEEeecC
Q 039497 595 LT---WNGYENGTPAWHPGNQLDLGKLR 619 (642)
Q Consensus 595 lt---~~~~~~~~~~~s~dg~~~~~~~~ 619 (642)
.. .-....+.+.|.++++.++...+
T Consensus 363 ~~~~~~~~~~ly~v~f~~~~~g~~~G~~ 390 (398)
T PLN00033 363 DKGADNIAANLYSVKFFDDKKGFVLGND 390 (398)
T ss_pred ccccCCCCcceeEEEEcCCCceEEEeCC
Confidence 32 11234568888888888877654
No 388
>PHA03098 kelch-like protein; Provisional
Probab=78.11 E-value=1.1e+02 Score=33.30 Aligned_cols=135 Identities=6% Similarity=-0.036 Sum_probs=65.3
Q ss_pred eeEEEEECCCCccccceeeCCCCCCcccce-eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCC
Q 039497 460 KNLFVLDAVNGEFNGDIRQLTDGPWIDTMP-SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGD 538 (642)
Q Consensus 460 ~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~-~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 538 (642)
..++.+|..+++. ..+...+...... .-.-+|+ |+..+..... ......++++|+.+++.+.+......
T Consensus 358 ~~v~~yd~~~~~W----~~~~~lp~~r~~~~~~~~~~~-iYv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~~p~~---- 427 (534)
T PHA03098 358 NTVESWKPGESKW----REEPPLIFPRYNPCVVNVNNL-IYVIGGISKN-DELLKTVECFSLNTNKWSKGSPLPIS---- 427 (534)
T ss_pred ceEEEEcCCCCce----eeCCCcCcCCccceEEEECCE-EEEECCcCCC-CcccceEEEEeCCCCeeeecCCCCcc----
Confidence 3688999988875 5554433221122 2233454 5444432110 11235689999988877766432111
Q ss_pred cccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCC-CCCcEEecCCceEEee
Q 039497 539 VDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYE-NGTPAWHPGNQLDLGK 617 (642)
Q Consensus 539 ~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~-~~~~~~s~dg~~~~~~ 617 (642)
.........+++ |++........ .......++.||...++-+.+...... .......-+++.++..
T Consensus 428 ----r~~~~~~~~~~~-iyv~GG~~~~~--------~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~G 494 (534)
T PHA03098 428 ----HYGGCAIYHDGK-IYVIGGISYID--------NIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVG 494 (534)
T ss_pred ----ccCceEEEECCE-EEEECCccCCC--------CCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEc
Confidence 112233344554 55444322110 000122599999988776666532211 1111223366666544
No 389
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=77.71 E-value=48 Score=31.81 Aligned_cols=111 Identities=18% Similarity=0.178 Sum_probs=61.7
Q ss_pred cCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEE
Q 039497 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVI 518 (642)
Q Consensus 439 ~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~ 518 (642)
..+.|..|| .|+-.+...|.+.|..+|+.+|+. .....|... .-...++.. +..|+...-..+ ..+++
T Consensus 48 QGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~-~~~~~l~~~-~FgEGit~~--~d~l~qLTWk~~-------~~f~y 115 (264)
T PF05096_consen 48 QGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKV-LQSVPLPPR-YFGEGITIL--GDKLYQLTWKEG-------TGFVY 115 (264)
T ss_dssp EEEEEEETT-EEEEEECSTTEEEEEEEETTTSSE-EEEEE-TTT---EEEEEEE--TTEEEEEESSSS-------EEEEE
T ss_pred ccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcE-EEEEECCcc-ccceeEEEE--CCEEEEEEecCC-------eEEEE
Confidence 345665565 566677778899999999999985 111223332 222344544 445666655432 38999
Q ss_pred eCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC
Q 039497 519 KPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589 (642)
Q Consensus 519 d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 589 (642)
|.++-+...-.....++ -....||+.|+.+.... .|+.+|...
T Consensus 116 d~~tl~~~~~~~y~~EG-----------WGLt~dg~~Li~SDGS~-----------------~L~~~dP~~ 158 (264)
T PF05096_consen 116 DPNTLKKIGTFPYPGEG-----------WGLTSDGKRLIMSDGSS-----------------RLYFLDPET 158 (264)
T ss_dssp ETTTTEEEEEEE-SSS-------------EEEECSSCEEEE-SSS-----------------EEEEE-TTT
T ss_pred ccccceEEEEEecCCcc-----------eEEEcCCCEEEEECCcc-----------------ceEEECCcc
Confidence 99764332222212233 23347888887765432 788887654
No 390
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=77.39 E-value=30 Score=28.02 Aligned_cols=19 Identities=47% Similarity=0.702 Sum_probs=16.4
Q ss_pred cceEEcCCCCEEEEEEecC
Q 039497 545 NHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 545 ~~~~~S~Dg~~l~~~~~~~ 563 (642)
..-.|||||++|-|+.++.
T Consensus 71 HvHvfSpDG~~lSFTYNDh 89 (122)
T PF12566_consen 71 HVHVFSPDGSWLSFTYNDH 89 (122)
T ss_pred cceEECCCCCEEEEEecch
Confidence 3568999999999999875
No 391
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=76.78 E-value=3.7 Score=45.11 Aligned_cols=174 Identities=13% Similarity=0.097 Sum_probs=96.2
Q ss_pred ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
..+||-+.+.|+.... .++|.++++.+|....-.. ...+..+.-|-||..++..+. ....-..+|++..
T Consensus 1106 c~afs~~~~hL~vG~~---~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss-----~S~PlsaLW~~~s- 1176 (1516)
T KOG1832|consen 1106 CIAFSGGTNHLAVGSH---AGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSS-----SSSPLSALWDASS- 1176 (1516)
T ss_pred eEEeecCCceEEeeec---cceEEEEEccCccccccccccccccccccccCCcceeeeecc-----ccCchHHHhcccc-
Confidence 4578888888877543 4788888988887544443 445666777889988776653 1233456787754
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee-CCC---CCCccc
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ-LTD---GPWIDT 487 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~-l~~---~~~~~~ 487 (642)
. ++ ....+. ....+.||..-..-+.... .....+||++|+.. +.. ++. ..+..+
T Consensus 1177 -~-----~~-----~~Hsf~-----ed~~vkFsn~~q~r~~gt~---~d~a~~YDvqT~~~---l~tylt~~~~~~y~~n 1234 (1516)
T KOG1832|consen 1177 -T-----GG-----PRHSFD-----EDKAVKFSNSLQFRALGTE---ADDALLYDVQTCSP---LQTYLTDTVTSSYSNN 1234 (1516)
T ss_pred -c-----cC-----cccccc-----ccceeehhhhHHHHHhccc---ccceEEEecccCcH---HHHhcCcchhhhhhcc
Confidence 1 11 111111 2223455543222222222 23567889999875 344 332 223335
Q ss_pred ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEE
Q 039497 488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560 (642)
Q Consensus 488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~ 560 (642)
...|||+.+.|+. ++ .+||+...+. |...+... ....-.|.|.|..+++.+
T Consensus 1235 ~a~FsP~D~LIln---dG----------vLWDvR~~~a--Ih~FD~ft-------~~~~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1235 LAHFSPCDTLILN---DG----------VLWDVRIPEA--IHRFDQFT-------DYGGGGFHPSGNEVIINS 1285 (1516)
T ss_pred ccccCCCcceEee---Cc----------eeeeeccHHH--Hhhhhhhe-------ecccccccCCCceEEeec
Confidence 5699999986652 22 5667654422 22211111 112346788888877765
No 392
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=76.07 E-value=11 Score=41.58 Aligned_cols=114 Identities=24% Similarity=0.277 Sum_probs=64.3
Q ss_pred ccCcEECCCCCeEEEEeC---CCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCcee
Q 039497 438 NAFPSCSPDGKFLVFRSG---RSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFS 514 (642)
Q Consensus 438 ~~~~~~SpDg~~l~~~~~---~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~ 514 (642)
..-.+|+|-.-.+++++. +.|...|| .++|++ .+.++- +..+.+..|+|..- +++..-.. + .
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIf---adtGEP---qr~Vt~-P~hatSLCWHpe~~-vLa~gwe~-----g--~ 82 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIF---ADTGEP---QRDVTY-PVHATSLCWHPEEF-VLAQGWEM-----G--V 82 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEE---ecCCCC---Cccccc-ceehhhhccChHHH-HHhhcccc-----c--e
Confidence 344578888777776653 33443444 356875 344443 34556789999853 33333221 1 2
Q ss_pred EEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC
Q 039497 515 LYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589 (642)
Q Consensus 515 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 589 (642)
+-++...+.+...+.. .+.. .+..+.||+||..|+...+-+.. .+|++|.-|
T Consensus 83 ~~v~~~~~~e~htv~~-th~a-------~i~~l~wS~~G~~l~t~d~~g~v---------------~lwr~d~~g 134 (1416)
T KOG3617|consen 83 SDVQKTNTTETHTVVE-THPA-------PIQGLDWSHDGTVLMTLDNPGSV---------------HLWRYDVIG 134 (1416)
T ss_pred eEEEecCCceeeeecc-CCCC-------CceeEEecCCCCeEEEcCCCcee---------------EEEEeeecc
Confidence 4555544444433322 2222 35678999999988766654433 788888543
No 393
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=75.95 E-value=55 Score=32.18 Aligned_cols=83 Identities=16% Similarity=0.176 Sum_probs=54.5
Q ss_pred CccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCC--------
Q 039497 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD-------- 508 (642)
Q Consensus 437 ~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~-------- 508 (642)
...+|.|. || .|++... +..+|+.+|.++|+. +.+..-++....+.|. |+++++.-+.....
T Consensus 204 mPhSPRWh-dg-rLwvlds--gtGev~~vD~~~G~~----e~Va~vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl 273 (335)
T TIGR03032 204 MPHSPRWY-QG-KLWLLNS--GRGELGYVDPQAGKF----QPVAFLPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPI 273 (335)
T ss_pred CCcCCcEe-CC-eEEEEEC--CCCEEEEEcCCCCcE----EEEEECCCCCccccee--CCEEEEEeccccCCCCcCCCch
Confidence 45568887 45 4555554 556999999998985 7777666777888888 87665544332100
Q ss_pred ----CCCceeEEEEeCCCCceEEee
Q 039497 509 ----NVEAFSLYVIKPDGSGLRRIH 529 (642)
Q Consensus 509 ----~~~~~~l~~~d~~~~~~~~l~ 529 (642)
......|+++|+.+|......
T Consensus 274 ~~~l~~~~CGv~vidl~tG~vv~~l 298 (335)
T TIGR03032 274 EERLDALGCGVAVIDLNSGDVVHWL 298 (335)
T ss_pred hhhhhhhcccEEEEECCCCCEEEEE
Confidence 123467888888887755433
No 394
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.47 E-value=76 Score=30.16 Aligned_cols=140 Identities=11% Similarity=0.022 Sum_probs=75.2
Q ss_pred EEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCC
Q 039497 336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414 (642)
Q Consensus 336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 414 (642)
..-+|.+.++|.... ...+--+|..+++....+. ...+..-+.- -|++++.... .+.+++..+++
T Consensus 17 VV~~dskT~v~igSH--s~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy-------~g~lYfl~~~t---- 82 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSH--SGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCY-------SGGLYFLCVKT---- 82 (354)
T ss_pred EEecCCceEEEEecC--CceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEc-------cCcEEEEEecc----
Confidence 445666777776532 1233446777776544333 2222222211 4666776664 34444444433
Q ss_pred CCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecC
Q 039497 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494 (642)
Q Consensus 415 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spd 494 (642)
|+ ....+...+ ..-..+...+|+..|+..+.+ .++|.+|..+..- +....-+.....+|...|-
T Consensus 83 -----Gs----~~w~f~~~~-~vk~~a~~d~~~glIycgshd---~~~yalD~~~~~c---VykskcgG~~f~sP~i~~g 146 (354)
T KOG4649|consen 83 -----GS----QIWNFVILE-TVKVRAQCDFDGGLIYCGSHD---GNFYALDPKTYGC---VYKSKCGGGTFVSPVIAPG 146 (354)
T ss_pred -----hh----heeeeeehh-hhccceEEcCCCceEEEecCC---CcEEEecccccce---EEecccCCceeccceecCC
Confidence 32 333333322 222346778888877766643 3799999887654 4454444445567888883
Q ss_pred CCEEEEEecCC
Q 039497 495 GDLIAFSSNRH 505 (642)
Q Consensus 495 G~~l~~~~~~~ 505 (642)
...|+++...+
T Consensus 147 ~~sly~a~t~G 157 (354)
T KOG4649|consen 147 DGSLYAAITAG 157 (354)
T ss_pred CceEEEEeccc
Confidence 34466666554
No 395
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=75.29 E-value=11 Score=24.00 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=19.4
Q ss_pred CCCCeEEEEeCCCCceeEEEEECCCCcc
Q 039497 445 PDGKFLVFRSGRSGHKNLFVLDAVNGEF 472 (642)
Q Consensus 445 pDg~~l~~~~~~~g~~~l~~~d~~~g~~ 472 (642)
|||++|+.+.. +...|.++|..+++.
T Consensus 1 pd~~~lyv~~~--~~~~v~~id~~~~~~ 26 (42)
T TIGR02276 1 PDGTKLYVTNS--GSNTVSVIDTATNKV 26 (42)
T ss_pred CCCCEEEEEeC--CCCEEEEEECCCCeE
Confidence 68888876654 344888899988775
No 396
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=75.07 E-value=9.7 Score=24.34 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=18.0
Q ss_pred CCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce
Q 039497 551 ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL 592 (642)
Q Consensus 551 ~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 592 (642)
|||++|+++....+ .|..+|..+++.
T Consensus 1 pd~~~lyv~~~~~~----------------~v~~id~~~~~~ 26 (42)
T TIGR02276 1 PDGTKLYVTNSGSN----------------TVSVIDTATNKV 26 (42)
T ss_pred CCCCEEEEEeCCCC----------------EEEEEECCCCeE
Confidence 68888876654332 788888876654
No 397
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.71 E-value=1e+02 Score=31.25 Aligned_cols=70 Identities=21% Similarity=0.200 Sum_probs=49.5
Q ss_pred CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
+.++|||..+-|+... .-...|-++|+.+.....-.. ...+.+..|.-|.+..+|... .++-+.+|++..
T Consensus 197 rdlafSp~~~GLl~~a--sl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl------~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 197 RDLAFSPFNEGLLGLA--SLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGL------QNGMVLVYDMRQ 267 (463)
T ss_pred hhhccCccccceeeee--ccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEec------cCceEEEEEccC
Confidence 4568899887443332 224678888988766443322 566788899999999999884 377888888866
No 398
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=72.99 E-value=22 Score=34.39 Aligned_cols=75 Identities=9% Similarity=0.090 Sum_probs=58.1
Q ss_pred CceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497 511 EAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590 (642)
Q Consensus 511 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 590 (642)
...+|..+|.+.++.+.|....... ++.+...+.++-+.|-...|++...++-. +--||.++..++
T Consensus 76 KYSHVH~yd~e~~~VrLLWkesih~-~~~WaGEVSdIlYdP~~D~LLlAR~DGh~-------------nLGvy~ldr~~g 141 (339)
T PF09910_consen 76 KYSHVHEYDTENDSVRLLWKESIHD-KTKWAGEVSDILYDPYEDRLLLARADGHA-------------NLGVYSLDRRTG 141 (339)
T ss_pred ccceEEEEEcCCCeEEEEEecccCC-ccccccchhheeeCCCcCEEEEEecCCcc-------------eeeeEEEcccCC
Confidence 4567999999999999888754332 34445578899999999999999888754 347888898888
Q ss_pred ceeeccCCC
Q 039497 591 GLRRLTWNG 599 (642)
Q Consensus 591 ~~~~lt~~~ 599 (642)
+.++|...+
T Consensus 142 ~~~~L~~~p 150 (339)
T PF09910_consen 142 KAEKLSSNP 150 (339)
T ss_pred ceeeccCCC
Confidence 888888653
No 399
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=72.18 E-value=14 Score=40.76 Aligned_cols=115 Identities=18% Similarity=0.158 Sum_probs=68.1
Q ss_pred eeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeC
Q 039497 376 FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSG 455 (642)
Q Consensus 376 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~ 455 (642)
.-..|.|..-.+++.+..+ +..+.+.|+.- . |+ ..+.++.+ ....++.|+|.. .+++...
T Consensus 19 ti~SWHPsePlfAVA~fS~---er~GSVtIfad-t---------GE----Pqr~Vt~P--~hatSLCWHpe~-~vLa~gw 78 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSP---ERGGSVTIFAD-T---------GE----PQRDVTYP--VHATSLCWHPEE-FVLAQGW 78 (1416)
T ss_pred cccccCCCCceeEEEEecC---CCCceEEEEec-C---------CC----CCcccccc--eehhhhccChHH-HHHhhcc
Confidence 3457888877777766431 22344444432 2 21 22333322 356678899963 5555554
Q ss_pred CCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC
Q 039497 456 RSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD 521 (642)
Q Consensus 456 ~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~ 521 (642)
..| .+.++...+.+. ......++..+..+.|||+|..++...+. +..++|++|..
T Consensus 79 e~g--~~~v~~~~~~e~---htv~~th~a~i~~l~wS~~G~~l~t~d~~------g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 79 EMG--VSDVQKTNTTET---HTVVETHPAPIQGLDWSHDGTVLMTLDNP------GSVHLWRYDVI 133 (1416)
T ss_pred ccc--eeEEEecCCcee---eeeccCCCCCceeEEecCCCCeEEEcCCC------ceeEEEEeeec
Confidence 444 455555555543 34445566777888999999987765543 56788888865
No 400
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=72.17 E-value=1.6e+02 Score=32.35 Aligned_cols=201 Identities=7% Similarity=-0.052 Sum_probs=97.8
Q ss_pred ceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497 353 NAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT 431 (642)
Q Consensus 353 ~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 431 (642)
-..++++|...++..++.. ...-.......=+..|+.+.... ....-..+..|+... + +...+.
T Consensus 348 l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~d-g~~~l~svE~YDp~~--~------------~W~~va 412 (571)
T KOG4441|consen 348 LSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFD-GEKSLNSVECYDPVT--N------------KWTPVA 412 (571)
T ss_pred cceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccc-cccccccEEEecCCC--C------------cccccC
Confidence 3678999999888666544 11111222222233454444210 111112334444333 2 333333
Q ss_pred ccCCCCccCcEECCCCCeEEEEeCCCC-c---eeEEEEECCCCccccceeeCCCCCCcccce-eEecCCCEEEEEecCCC
Q 039497 432 KEETGNNAFPSCSPDGKFLVFRSGRSG-H---KNLFVLDAVNGEFNGDIRQLTDGPWIDTMP-SWSPKGDLIAFSSNRHN 506 (642)
Q Consensus 432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g-~---~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~-~~spdG~~l~~~~~~~~ 506 (642)
.............-+| +|+.....++ . ..+..+|..++++ +.+......-... .-.=++ .||..+....
T Consensus 413 ~m~~~r~~~gv~~~~g-~iYi~GG~~~~~~~l~sve~YDP~t~~W----~~~~~M~~~R~~~g~a~~~~-~iYvvGG~~~ 486 (571)
T KOG4441|consen 413 PMLTRRSGHGVAVLGG-KLYIIGGGDGSSNCLNSVECYDPETNTW----TLIAPMNTRRSGFGVAVLNG-KIYVVGGFDG 486 (571)
T ss_pred CCCcceeeeEEEEECC-EEEEEcCcCCCccccceEEEEcCCCCce----eecCCcccccccceEEEECC-EEEEECCccC
Confidence 2221122222233344 4544443332 2 3788999999886 7766654322222 222244 4555544332
Q ss_pred CCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEE
Q 039497 507 PDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVK 586 (642)
Q Consensus 507 ~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 586 (642)
......+..+|..+.+.+.+...... ...+.....+..||+.....+.. .-..|-.||
T Consensus 487 --~~~~~~VE~ydp~~~~W~~v~~m~~~---------rs~~g~~~~~~~ly~vGG~~~~~-----------~l~~ve~yd 544 (571)
T KOG4441|consen 487 --TSALSSVERYDPETNQWTMVAPMTSP---------RSAVGVVVLGGKLYAVGGFDGNN-----------NLNTVECYD 544 (571)
T ss_pred --CCccceEEEEcCCCCceeEcccCccc---------cccccEEEECCEEEEEecccCcc-----------ccceeEEcC
Confidence 12345588999999999888643322 23444455556677666544321 123555566
Q ss_pred cCCCceeecc
Q 039497 587 LDGSGLRRLT 596 (642)
Q Consensus 587 ~~~~~~~~lt 596 (642)
....+-+..+
T Consensus 545 p~~d~W~~~~ 554 (571)
T KOG4441|consen 545 PETDTWTEVT 554 (571)
T ss_pred CCCCceeeCC
Confidence 6555544444
No 401
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.95 E-value=37 Score=34.84 Aligned_cols=104 Identities=12% Similarity=0.098 Sum_probs=67.9
Q ss_pred CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee-cCCCCCCCcccccccceEEcCCCCEEEEEE
Q 039497 482 GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV-AGPEGSGDVDRERINHVCFSADGEWLLFTA 560 (642)
Q Consensus 482 ~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~ 560 (642)
..+.+.++.||+|.+.|++...+.. |-.++..+.+..+... ....+ ...+....|+.. .-+++..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~--------v~f~nf~~d~~~l~~~~~ck~k-----~~~IlGF~W~~s-~e~A~i~ 130 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKT--------VDFCNFIPDNSQLEYTQECKTK-----NANILGFCWTSS-TEIAFIT 130 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCce--------EEEEecCCCchhhHHHHHhccC-----cceeEEEEEecC-eeEEEEe
Confidence 3456788999999999999887654 6666665444332211 00000 013456788755 7788888
Q ss_pred ecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEE
Q 039497 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDL 615 (642)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~ 615 (642)
+.+- ++|.++.....++-+......+....|-++-+.++
T Consensus 131 ~~G~----------------e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 131 DQGI----------------EFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred cCCe----------------EEEEEchhhhhhhhhhhcccCccEEEEccccceEe
Confidence 7653 78888776666666666666677778888876653
No 402
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=71.91 E-value=1.5e+02 Score=31.88 Aligned_cols=145 Identities=12% Similarity=0.126 Sum_probs=69.3
Q ss_pred eEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCC----------CCCceeEEEE
Q 039497 449 FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD----------NVEAFSLYVI 518 (642)
Q Consensus 449 ~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~----------~~~~~~l~~~ 518 (642)
.+++....+| .|+.+|.++|+. +-..... ...+..+| +.+++........ ......|+-+
T Consensus 302 ~~V~~g~~~G--~l~ald~~tG~~---~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al 371 (488)
T cd00216 302 PAIVHAPKNG--FFYVLDRTTGKL---ISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL 371 (488)
T ss_pred EEEEEECCCc--eEEEEECCCCcE---eeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEE
Confidence 3556554444 799999999985 2222111 11234444 4455433210000 0123458888
Q ss_pred eCCCCceEEeeecCC-CCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee-ecc
Q 039497 519 KPDGSGLRRIHVAGP-EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR-RLT 596 (642)
Q Consensus 519 d~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~lt 596 (642)
|+.+++..=-..... ....... .....-.....+..|++.+.++ .||.+|.++|++. +..
T Consensus 372 D~~tG~~~W~~~~~~~~~~~~~g-~~~~~~~~~~~g~~v~~g~~dG-----------------~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 372 DPKTGKVVWEKREGTIRDSWNIG-FPHWGGSLATAGNLVFAGAADG-----------------YFRAFDATTGKELWKFR 433 (488)
T ss_pred eCCCCcEeeEeeCCccccccccC-CcccCcceEecCCeEEEECCCC-----------------eEEEEECCCCceeeEEE
Confidence 988876431111110 0000000 0000011123556666665433 8999998887743 222
Q ss_pred CCCCCCCCcE-EecCCceEEeecCCC
Q 039497 597 WNGYENGTPA-WHPGNQLDLGKLRLE 621 (642)
Q Consensus 597 ~~~~~~~~~~-~s~dg~~~~~~~~~~ 621 (642)
........|. |..+|++++.....+
T Consensus 434 ~~~~~~a~P~~~~~~g~~yv~~~~g~ 459 (488)
T cd00216 434 TPSGIQATPMTYEVNGKQYVGVMVGG 459 (488)
T ss_pred CCCCceEcCEEEEeCCEEEEEEEecC
Confidence 2223334564 677887777665554
No 403
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=71.31 E-value=16 Score=24.54 Aligned_cols=21 Identities=10% Similarity=0.290 Sum_probs=17.6
Q ss_pred cccceEEcCCCCEEEEEEecC
Q 039497 543 RINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 543 ~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
.+..+.|+|....|++...++
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g 33 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDG 33 (47)
T ss_pred cEEEEEECCCCCEEEEEECCC
Confidence 456899999999998888765
No 404
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=70.43 E-value=82 Score=28.33 Aligned_cols=83 Identities=13% Similarity=0.063 Sum_probs=55.7
Q ss_pred CCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC---Cc---ceEeeCCeEEEEEecCCCce----EE
Q 039497 148 SYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG---GW---PTWSGDSTIYFHRQADDGWW----SI 217 (642)
Q Consensus 148 SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~---~~wspdg~~~~~~~~~~g~~----~l 217 (642)
|-+|++=|-....++.. ..++-+.||++++.++...+|..... .. +.|-.|..++++....-|+. +|
T Consensus 66 s~~~~~saciegkg~~a---~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnL 142 (200)
T PF15525_consen 66 SENGKYSACIEGKGPEA---EEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNL 142 (200)
T ss_pred ccCCceeEEEEcCCCcc---ccccceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeE
Confidence 56789888776654211 11345789999999998876644222 23 48999987666642223332 99
Q ss_pred EEEecCCCcccccCCccceeeCCC
Q 039497 218 FRVSFPENLEFLGFPIAPTRVTPP 241 (642)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~l~~~ 241 (642)
|.+++.++ +...+...
T Consensus 143 y~~nl~tg--------~~~~ly~~ 158 (200)
T PF15525_consen 143 YKYNLNTG--------NLTELYEW 158 (200)
T ss_pred EEEEccCC--------ceeEeeec
Confidence 99999998 66777664
No 405
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=70.38 E-value=49 Score=34.57 Aligned_cols=153 Identities=8% Similarity=0.055 Sum_probs=77.6
Q ss_pred CCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCC
Q 039497 341 GGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR 420 (642)
Q Consensus 341 g~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 420 (642)
.+.|+|... .....||.+|++-|+...-..-+.-.-+.|.|+.+.--.+....+ -+-....+++++.+.. +.
T Consensus 478 dssli~~dg-~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtl--vGlS~~svFrIDPR~~-----gN 549 (776)
T COG5167 478 DSSLIYLDG-GERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTL--VGLSDYSVFRIDPRAR-----GN 549 (776)
T ss_pred CcceEEecC-CCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceE--EeecccceEEeccccc-----CC
Confidence 334556443 556789999999988766555222224555554432111110000 0112334566655222 11
Q ss_pred CccccceEEccccC---CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCE
Q 039497 421 EEIPCDVKILTKEE---TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL 497 (642)
Q Consensus 421 ~~~~~~~~~l~~~~---~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~ 497 (642)
++....... .....+..-... -+|+.++.+ | .|.++|--+-.. -..|......+.++..+.+|++
T Consensus 550 -----Ki~v~esKdY~tKn~Fss~~tTes-GyIa~as~k-G--DirLyDRig~rA---KtalP~lG~aIk~idvta~Gk~ 617 (776)
T COG5167 550 -----KIKVVESKDYKTKNKFSSGMTTES-GYIAAASRK-G--DIRLYDRIGKRA---KTALPGLGDAIKHIDVTANGKH 617 (776)
T ss_pred -----ceeeeeehhccccccccccccccC-ceEEEecCC-C--ceeeehhhcchh---hhcCcccccceeeeEeecCCcE
Confidence 222111110 011111222223 478877744 3 677777553332 2345555556778899999999
Q ss_pred EEEEecCCCCCCCCceeEEEEeCCC
Q 039497 498 IAFSSNRHNPDNVEAFSLYVIKPDG 522 (642)
Q Consensus 498 l~~~~~~~~~~~~~~~~l~~~d~~~ 522 (642)
|+.+...- |.+.|+..
T Consensus 618 ilaTCk~y---------llL~d~~i 633 (776)
T COG5167 618 ILATCKNY---------LLLTDVPI 633 (776)
T ss_pred EEEeecce---------EEEEeccc
Confidence 98887653 77777654
No 406
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=69.69 E-value=18 Score=38.57 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=50.1
Q ss_pred ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccc-cceeecCCcEEEEEEeccCCceeeEEEE
Q 039497 196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCF-TPAAFHDGKRLAVATRRKNRNFRHIEIY 274 (642)
Q Consensus 196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~SpdG~~l~~~~~~~~~~~~~i~~~ 274 (642)
..|+|.-.+++.+ ..+|..-++|++ -. +...+..++..+. ..+|-|||+.|++.-.++ +|.+.
T Consensus 26 ~ewnP~~dLiA~~-t~~gelli~R~n--~q--------Rlwtip~p~~~v~~sL~W~~DGkllaVg~kdG-----~I~L~ 89 (665)
T KOG4640|consen 26 IEWNPKMDLIATR-TEKGELLIHRLN--WQ--------RLWTIPIPGENVTASLCWRPDGKLLAVGFKDG-----TIRLH 89 (665)
T ss_pred EEEcCccchhhee-ccCCcEEEEEec--cc--------eeEeccCCCCccceeeeecCCCCEEEEEecCC-----eEEEE
Confidence 5788887777776 456766777766 11 4455554554555 889999999999965553 89999
Q ss_pred EeecCCCCcc
Q 039497 275 DLTLNPNFHH 284 (642)
Q Consensus 275 d~~~~~~~~~ 284 (642)
|...++....
T Consensus 90 Dve~~~~l~~ 99 (665)
T KOG4640|consen 90 DVEKGGRLVS 99 (665)
T ss_pred EccCCCceec
Confidence 9966554433
No 407
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=68.94 E-value=85 Score=32.35 Aligned_cols=31 Identities=10% Similarity=0.214 Sum_probs=23.6
Q ss_pred cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
......+.+||.+.+++.-. .++++++.++.
T Consensus 357 ~~~~~~~~~Sp~~~~Ll~e~--------~gki~~~~l~N 387 (733)
T COG4590 357 YQAPQLVAMSPNQAYLLSED--------QGKIRLAQLEN 387 (733)
T ss_pred hcCcceeeeCcccchheeec--------CCceEEEEecC
Confidence 34667789999999887644 67888888865
No 408
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=68.67 E-value=27 Score=37.23 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=52.5
Q ss_pred CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCc-cCcEECCCCCeEE
Q 039497 373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN-AFPSCSPDGKFLV 451 (642)
Q Consensus 373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~SpDg~~l~ 451 (642)
..+..+.|+|.-..||+... .+.+-+++++. . ....+..+. ..+ ..+.|-|||+.|+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~-------~gelli~R~n~--q------------Rlwtip~p~-~~v~~sL~W~~DGklla 78 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTE-------KGELLIHRLNW--Q------------RLWTIPIPG-ENVTASLCWRPDGKLLA 78 (665)
T ss_pred cceEEEEEcCccchhheecc-------CCcEEEEEecc--c------------eeEeccCCC-CccceeeeecCCCCEEE
Confidence 45667889998888887753 56677777754 2 444444222 233 4799999999998
Q ss_pred EEeCCCCceeEEEEECCCCcc
Q 039497 452 FRSGRSGHKNLFVLDAVNGEF 472 (642)
Q Consensus 452 ~~~~~~g~~~l~~~d~~~g~~ 472 (642)
+.-.. +.|.+.|+.+|..
T Consensus 79 Vg~kd---G~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 79 VGFKD---GTIRLHDVEKGGR 96 (665)
T ss_pred EEecC---CeEEEEEccCCCc
Confidence 87643 4899999988775
No 409
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=68.60 E-value=1.2e+02 Score=29.42 Aligned_cols=162 Identities=12% Similarity=0.122 Sum_probs=84.0
Q ss_pred CCCEEEEEecCCCceeEEEEEC-CCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCC
Q 039497 340 DGGLIVFNHDFELNAGIKIAKS-DGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDN 418 (642)
Q Consensus 340 dg~~l~~~~~~~~~~~l~~~d~-~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 418 (642)
.+++|++... ..||+++. ......++.....+..+...|+-+.|+..+ ++.+.+++++........
T Consensus 6 ~~~~L~vGt~----~Gl~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs--------d~~l~~~~L~~l~~~~~~- 72 (275)
T PF00780_consen 6 WGDRLLVGTE----DGLYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS--------DGQLYVYDLDSLEPVSTS- 72 (275)
T ss_pred CCCEEEEEEC----CCEEEEEecCCccceeEeecceEEEEEEecccCEEEEEc--------CCccEEEEchhhcccccc-
Confidence 4677777543 34899888 444445555444588888888888888876 467777776541110000
Q ss_pred CCCcccc---ceEEccccCCCCccCcE---ECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEe
Q 039497 419 NREEIPC---DVKILTKEETGNNAFPS---CSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492 (642)
Q Consensus 419 ~~~~~~~---~~~~l~~~~~~~~~~~~---~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~s 492 (642)
.....+. ....+... .....++ -...+..|+++..+ .-.||.|.....+.....+.+. .+.....+.|.
T Consensus 73 ~~~~~~~~~~~~~~~~~~--~~v~~f~~~~~~~~~~~L~va~kk--~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~ 147 (275)
T PF00780_consen 73 APLAFPKSRSLPTKLPET--KGVSFFAVNGGHEGSRRLCVAVKK--KILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL 147 (275)
T ss_pred cccccccccccccccccc--CCeeEEeeccccccceEEEEEECC--EEEEEEEECCcccccceeEEEE-cCCCcEEEEEe
Confidence 0000000 00011111 1122222 22334455555543 3355555543121000023332 22455677888
Q ss_pred cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497 493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV 530 (642)
Q Consensus 493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 530 (642)
++.|++...++ .+++|+.++..+.+..
T Consensus 148 --~~~i~v~~~~~---------f~~idl~~~~~~~l~~ 174 (275)
T PF00780_consen 148 --GNKICVGTSKG---------FYLIDLNTGSPSELLD 174 (275)
T ss_pred --CCEEEEEeCCc---------eEEEecCCCCceEEeC
Confidence 56787776554 7899999888877764
No 410
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=67.94 E-value=16 Score=24.45 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=24.1
Q ss_pred cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497 485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG 522 (642)
Q Consensus 485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~ 522 (642)
.+....|+|....|+....++. |+++.+++
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~--------v~v~Rl~~ 42 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGE--------VLVYRLNW 42 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCe--------EEEEECCC
Confidence 3567899999999999988764 88887744
No 411
>PLN02193 nitrile-specifier protein
Probab=67.43 E-value=1.8e+02 Score=31.07 Aligned_cols=82 Identities=12% Similarity=0.127 Sum_probs=42.3
Q ss_pred CCCCeEEEEeCC-CCceeEEEEECCCCccccceeeCCCC---CC-cccceeEecCCCEEEEEecCCCCC------CCCce
Q 039497 445 PDGKFLVFRSGR-SGHKNLFVLDAVNGEFNGDIRQLTDG---PW-IDTMPSWSPKGDLIAFSSNRHNPD------NVEAF 513 (642)
Q Consensus 445 pDg~~l~~~~~~-~g~~~l~~~d~~~g~~~~~~~~l~~~---~~-~~~~~~~spdG~~l~~~~~~~~~~------~~~~~ 513 (642)
-+++.+++.... .....++++|+.+.+. ..+... +. .....+..-+++.++|........ ..-..
T Consensus 327 ~~gkiyviGG~~g~~~~dv~~yD~~t~~W----~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n 402 (470)
T PLN02193 327 VQGKVWVVYGFNGCEVDDVHYYDPVQDKW----TQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTD 402 (470)
T ss_pred ECCcEEEEECCCCCccCceEEEECCCCEE----EEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceec
Confidence 356544443321 1124799999998875 555322 11 111122233555444444321000 01124
Q ss_pred eEEEEeCCCCceEEeee
Q 039497 514 SLYVIKPDGSGLRRIHV 530 (642)
Q Consensus 514 ~l~~~d~~~~~~~~l~~ 530 (642)
.++.+|+.+.+.+.+..
T Consensus 403 dv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 403 GTFALDTETLQWERLDK 419 (470)
T ss_pred cEEEEEcCcCEEEEccc
Confidence 69999999988887764
No 412
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=66.11 E-value=1.2e+02 Score=28.80 Aligned_cols=79 Identities=15% Similarity=0.323 Sum_probs=45.6
Q ss_pred ceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC----CccccceeeCCCCCCcccceeEecCCCEEEEE
Q 039497 426 DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN----GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFS 501 (642)
Q Consensus 426 ~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~----g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~ 501 (642)
+.+.+.....-....-++-|||+.|......+|...+..++..+ .........+....++ ....--|||+.|++.
T Consensus 57 ~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY-pT~~~L~DG~vlIvG 135 (243)
T PF07250_consen 57 TFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWY-PTATTLPDGRVLIVG 135 (243)
T ss_pred cEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcc-ccceECCCCCEEEEe
Confidence 45555444323445567889999988777766777777777654 1210001112333232 334556799988887
Q ss_pred ecCC
Q 039497 502 SNRH 505 (642)
Q Consensus 502 ~~~~ 505 (642)
....
T Consensus 136 G~~~ 139 (243)
T PF07250_consen 136 GSNN 139 (243)
T ss_pred CcCC
Confidence 7654
No 413
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=64.77 E-value=2.9e+02 Score=32.63 Aligned_cols=128 Identities=9% Similarity=-0.013 Sum_probs=71.2
Q ss_pred cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC-CCC-ccCcEECC-CCC
Q 039497 372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE-TGN-NAFPSCSP-DGK 448 (642)
Q Consensus 372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~-~~~~~~Sp-Dg~ 448 (642)
...+..+..-+.|..+++.+. ++.+++.+++. . ..........++.... .+. +..-++.. ++.
T Consensus 1098 ~sr~~~vt~~~~~~~~Av~t~-------DG~v~~~~id~--~-----~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S 1163 (1431)
T KOG1240|consen 1098 GSRVEKVTMCGNGDQFAVSTK-------DGSVRVLRIDH--Y-----NVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQS 1163 (1431)
T ss_pred CCceEEEEeccCCCeEEEEcC-------CCeEEEEEccc--c-----ccccceeeeeecccccCCCceEEeecccccccc
Confidence 445667777788888888853 67788777754 1 0100000111111111 011 11112222 333
Q ss_pred -eEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce
Q 039497 449 -FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL 525 (642)
Q Consensus 449 -~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~ 525 (642)
.|+|... ...|..||+..-.. .-..+.....+.+.+++.+|-+++++....++. +.+||+.-+.+
T Consensus 1164 ~~lvy~T~---~~~iv~~D~r~~~~-~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~--------l~lWDLRF~~~ 1229 (1431)
T KOG1240|consen 1164 HVLVYATD---LSRIVSWDTRMRHD-AWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQ--------LVLWDLRFRVP 1229 (1431)
T ss_pred eeEEEEEe---ccceEEecchhhhh-HHhhhcCccccceeEEEecCCceEEEEecCCce--------EEEEEeecCce
Confidence 4555553 34688888765332 001122334467889999999999988887764 89999976544
No 414
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=63.82 E-value=22 Score=22.55 Aligned_cols=32 Identities=9% Similarity=-0.112 Sum_probs=24.9
Q ss_pred cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC
Q 039497 485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS 523 (642)
Q Consensus 485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~ 523 (642)
....++|+|.+++|+++.... ..|++.++++.
T Consensus 10 ~~~~la~d~~~~~lYw~D~~~-------~~I~~~~~~g~ 41 (43)
T smart00135 10 HPNGLAVDWIEGRLYWTDWGL-------DVIEVANLDGT 41 (43)
T ss_pred CcCEEEEeecCCEEEEEeCCC-------CEEEEEeCCCC
Confidence 345689999999999987754 34888888765
No 415
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=62.11 E-value=2.4e+02 Score=30.79 Aligned_cols=67 Identities=9% Similarity=0.055 Sum_probs=35.3
Q ss_pred eecCCcEEEEEEeccCCceeeEEEEEeecC------CCCcccCCeecC-CCCEEEEEEeecCCCCCCcccceEeeccC
Q 039497 250 AFHDGKRLAVATRRKNRNFRHIEIYDLTLN------PNFHHYNPFVSA-NSEFIGYHRFRGESTEGQSTIPHLEPVAS 320 (642)
Q Consensus 250 ~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~------~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 320 (642)
.|||-++|++.....+.....+ +.++... ........+|-. ||..|.+..++.. +....++...+..
T Consensus 145 ~spD~~~ia~~~~~~~~e~~~~-v~~~~~~~~~~~~~~~g~~y~~w~~~dg~~l~~~t~~~~---~r~hkvy~h~~Gt 218 (712)
T KOG2237|consen 145 SSPDHKYIAYTKDTEGKELFTV-VIDVKFSGPVWTHDGKGVSYLAWAKQDGEDLLYGTEDEN---NRPHKVYYHTLGT 218 (712)
T ss_pred cCCCceEEEEEEcCCCCcccee-eeeeccCCceeeccCCceEeeeecccCCceeeeeeeccc---cCcceEEEEeccc
Confidence 4678888888776666555555 5555221 122233344544 6666666544443 2234455555543
No 416
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.11 E-value=1.7e+02 Score=32.35 Aligned_cols=40 Identities=20% Similarity=0.139 Sum_probs=27.4
Q ss_pred eeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc
Q 039497 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG 524 (642)
Q Consensus 477 ~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~ 524 (642)
..+......+..++.||+.++|+.....+. |++.+.+-.+
T Consensus 210 ~~~~~~~~~~~ki~VS~n~~~laLyt~~G~--------i~~vs~D~~~ 249 (829)
T KOG2280|consen 210 HALSWPNSSVVKISVSPNRRFLALYTETGK--------IWVVSIDLSQ 249 (829)
T ss_pred cccCCCCceEEEEEEcCCcceEEEEecCCc--------EEEEecchhh
Confidence 344443345566789999999988877765 7887776543
No 417
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=62.05 E-value=1.6e+02 Score=30.32 Aligned_cols=69 Identities=19% Similarity=0.251 Sum_probs=35.4
Q ss_pred cceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC--------CceeeccCCCCCCCCcEEecC-CceEE
Q 039497 545 NHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG--------SGLRRLTWNGYENGTPAWHPG-NQLDL 615 (642)
Q Consensus 545 ~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~lt~~~~~~~~~~~s~d-g~~~~ 615 (642)
..+.|+||| +||++..+....++. ..+-...+.+..++.++ .........-.+...++|+|- |++++
T Consensus 180 ~~l~f~pDG-~Lyvs~G~~~~~~~a---q~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~ 255 (399)
T COG2133 180 GRLVFGPDG-KLYVTTGSNGDPALA---QDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWT 255 (399)
T ss_pred ccEEECCCC-cEEEEeCCCCCcccc---cCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEE
Confidence 679999999 677665544111000 00001123444444333 332333333345578999997 77776
Q ss_pred ee
Q 039497 616 GK 617 (642)
Q Consensus 616 ~~ 617 (642)
+.
T Consensus 256 ~e 257 (399)
T COG2133 256 TE 257 (399)
T ss_pred Ee
Confidence 54
No 418
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=61.76 E-value=1.6e+02 Score=28.69 Aligned_cols=100 Identities=12% Similarity=0.181 Sum_probs=67.3
Q ss_pred CCceeEEEEECCCCCeeEEee---------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCC
Q 039497 351 ELNAGIKIAKSDGSKRWTLIK---------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNRE 421 (642)
Q Consensus 351 ~~~~~l~~~d~~~~~~~~l~~---------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 421 (642)
+.-.+|..+|.+.++.+.|.. .+.++.+.+.|-...|+++.. .+..++-+|.++. . +|
T Consensus 75 NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~-----DGh~nLGvy~ldr--~-----~g- 141 (339)
T PF09910_consen 75 NKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARA-----DGHANLGVYSLDR--R-----TG- 141 (339)
T ss_pred eccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEec-----CCcceeeeEEEcc--c-----CC-
Confidence 445789999999988777765 346778899999999998875 3567788999986 3 45
Q ss_pred ccccceEEccccCCCCccCcEECCCCCeEEEEeC--CCCceeEEEEECCCCcc
Q 039497 422 EIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSG--RSGHKNLFVLDAVNGEF 472 (642)
Q Consensus 422 ~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~--~~g~~~l~~~d~~~g~~ 472 (642)
+.+.|...+ . .....+. | ..+|.-+ ..+...|..+|+.+|+.
T Consensus 142 ----~~~~L~~~p-s-~KG~~~~-D--~a~F~i~~~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 142 ----KAEKLSSNP-S-LKGTLVH-D--YACFGINNFHKGVSGIHCLDLISGKW 185 (339)
T ss_pred ----ceeeccCCC-C-cCceEee-e--eEEEeccccccCCceEEEEEccCCeE
Confidence 677776655 1 1211221 2 2233321 13556899999998884
No 419
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=61.25 E-value=1.5e+02 Score=27.93 Aligned_cols=155 Identities=12% Similarity=0.094 Sum_probs=78.7
Q ss_pred CceeeeeecCCCEEEEEEcC--CCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEE
Q 039497 374 TAFYNSWSPTEKHVIYTSTG--PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451 (642)
Q Consensus 374 ~~~~~~~spdg~~l~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~ 451 (642)
...+...+|+|++.+=+... ..++.-.+.++.|.. ++ .+..+-.-- .....++|+-|-|.++
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~----------~h-----~v~~i~~~v-~IsNgl~Wd~d~K~fY 173 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA----------GH-----QVELIWNCV-GISNGLAWDSDAKKFY 173 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEecc----------CC-----Cceeeehhc-cCCccccccccCcEEE
Confidence 45566789999984433321 112222333333332 22 344443322 3445689999999999
Q ss_pred EEeCCCCceeE--EEEECCCCccc--cceeeCCCC----CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC
Q 039497 452 FRSGRSGHKNL--FVLDAVNGEFN--GDIRQLTDG----PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS 523 (642)
Q Consensus 452 ~~~~~~g~~~l--~~~d~~~g~~~--~~~~~l~~~----~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~ 523 (642)
|...-+ .+| |-+|..+|... +.+-.|... +......+...+|+..+..-+.+ .++.+|+.+|
T Consensus 174 ~iDsln--~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~--------~V~~~dp~tG 243 (310)
T KOG4499|consen 174 YIDSLN--YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGG--------TVQKVDPTTG 243 (310)
T ss_pred EEccCc--eEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCc--------EEEEECCCCC
Confidence 987543 455 77778888751 111122221 11112234555666433333332 3889999888
Q ss_pred ceEEeeecCCCCCCCcccccccceEEcCCC-CEEEEEEec
Q 039497 524 GLRRIHVAGPEGSGDVDRERINHVCFSADG-EWLLFTANL 562 (642)
Q Consensus 524 ~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg-~~l~~~~~~ 562 (642)
+.-+-..... . .+++..|---. ..++.+...
T Consensus 244 K~L~eiklPt-~-------qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 244 KILLEIKLPT-P-------QITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred cEEEEEEcCC-C-------ceEEEEecCCCccEEEEEehh
Confidence 7543222121 1 45677774332 344444443
No 420
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.56 E-value=2.7e+02 Score=31.12 Aligned_cols=53 Identities=13% Similarity=0.222 Sum_probs=30.0
Q ss_pred cccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCC------CCCCCCcEEecCCceEE
Q 039497 543 RINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWN------GYENGTPAWHPGNQLDL 615 (642)
Q Consensus 543 ~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~------~~~~~~~~~s~dg~~~~ 615 (642)
.+..+.| -|..|+++++.| +-++|+...+ ++.+... ......+.|.++.++++
T Consensus 162 ~I~~i~W--~g~lIAWand~G------------------v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI 221 (846)
T KOG2066|consen 162 PIHSIKW--RGNLIAWANDDG------------------VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI 221 (846)
T ss_pred ceEEEEe--cCcEEEEecCCC------------------cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE
Confidence 4555555 678888887664 4445554432 3333322 12235668888777665
No 421
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=59.70 E-value=70 Score=31.51 Aligned_cols=89 Identities=16% Similarity=0.162 Sum_probs=58.8
Q ss_pred CCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCC---CC
Q 039497 88 PCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESR---PW 164 (642)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~---~~ 164 (642)
+.+.+...|.+.+++|.+..... ++++.+++++|+...+..-++......|- |+++...-.... ..
T Consensus 200 ~GLsmPhSPRWhdgrLwvldsgt---------Gev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk~R~~~~f 268 (335)
T TIGR03032 200 SGLSMPHSPRWYQGKLWLLNSGR---------GELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSKLRESRVF 268 (335)
T ss_pred cCccCCcCCcEeCCeEEEEECCC---------CEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEeccccCCCCc
Confidence 34455567777788888866543 37999999889999998888888888887 877654432221 11
Q ss_pred C-----CCCCCCeeeEEEEEecCCCcee
Q 039497 165 P-----GEFHELNTDIVVFQESDPNKRV 187 (642)
Q Consensus 165 ~-----~~~~~~~~~l~~~~~~~g~~~~ 187 (642)
. .+......-|+++|+.+|....
T Consensus 269 ~glpl~~~l~~~~CGv~vidl~tG~vv~ 296 (335)
T TIGR03032 269 GGLPIEERLDALGCGVAVIDLNSGDVVH 296 (335)
T ss_pred CCCchhhhhhhhcccEEEEECCCCCEEE
Confidence 1 1112234678888888876443
No 422
>PHA02713 hypothetical protein; Provisional
Probab=59.23 E-value=2.7e+02 Score=30.44 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=36.1
Q ss_pred eeEEEEECCCCccccceeeCCCCCCcccce-eEecCCCEEEEEecCCCCCCCCceeEEEEeCCC-CceEEeee
Q 039497 460 KNLFVLDAVNGEFNGDIRQLTDGPWIDTMP-SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG-SGLRRIHV 530 (642)
Q Consensus 460 ~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~-~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~ 530 (642)
..+..+|+.+.++ ..+......-..+ ...-+|+ ||..+..... ......+.+||..+ .+.+.+..
T Consensus 432 ~~ve~YDP~td~W----~~v~~m~~~r~~~~~~~~~~~-IYv~GG~~~~-~~~~~~ve~Ydp~~~~~W~~~~~ 498 (557)
T PHA02713 432 NKVIRYDTVNNIW----ETLPNFWTGTIRPGVVSHKDD-IYVVCDIKDE-KNVKTCIFRYNTNTYNGWELITT 498 (557)
T ss_pred ceEEEECCCCCeE----eecCCCCcccccCcEEEECCE-EEEEeCCCCC-CccceeEEEecCCCCCCeeEccc
Confidence 3688999998875 5555433221122 2333554 5555432210 01123578999998 67876654
No 423
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=58.41 E-value=3.6e+02 Score=31.50 Aligned_cols=184 Identities=13% Similarity=0.091 Sum_probs=91.9
Q ss_pred eeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEEC-CCCCeEEEEeCC
Q 039497 378 NSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCS-PDGKFLVFRSGR 456 (642)
Q Consensus 378 ~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~S-pDg~~l~~~~~~ 456 (642)
+.|-....+|+.+. +-..++||+... . . ....+.......+..++-+ +.|+.|+ +...
T Consensus 1171 ~dWqQ~~G~Ll~tG-------d~r~IRIWDa~~--E------~-----~~~diP~~s~t~vTaLS~~~~~gn~i~-AGfa 1229 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVTG-------DVRSIRIWDAHK--E------Q-----VVADIPYGSSTLVTALSADLVHGNIIA-AGFA 1229 (1387)
T ss_pred eehhhhCCeEEecC-------CeeEEEEEeccc--c------e-----eEeecccCCCccceeecccccCCceEE-Eeec
Confidence 45655555555443 356788998865 1 1 3333333321223322211 2244444 4444
Q ss_pred CCceeEEEEECCCCccccceeeCC-CCCC--cccceeEecCCCE-EEEEecCCCCCCCCceeEEEEeCCCC-ceEEeeec
Q 039497 457 SGHKNLFVLDAVNGEFNGDIRQLT-DGPW--IDTMPSWSPKGDL-IAFSSNRHNPDNVEAFSLYVIKPDGS-GLRRIHVA 531 (642)
Q Consensus 457 ~g~~~l~~~d~~~g~~~~~~~~l~-~~~~--~~~~~~~spdG~~-l~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~ 531 (642)
+| .|.++|...... ..+.... .+.. .+.+..+-+.|-. |+-.+.++. |+++|+... ....++..
T Consensus 1230 DG--svRvyD~R~a~~-ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~--------I~~~DlR~~~~e~~~~iv 1298 (1387)
T KOG1517|consen 1230 DG--SVRVYDRRMAPP-DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD--------IQLLDLRMSSKETFLTIV 1298 (1387)
T ss_pred CC--ceEEeecccCCc-cccceeecccCCcccceeEEeecCCCcceeeeccCCe--------EEEEecccCcccccceee
Confidence 45 555566543221 0011111 1211 2556677776644 555555543 999999873 33223221
Q ss_pred CCC--CCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCC-------CC
Q 039497 532 GPE--GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGY-------EN 602 (642)
Q Consensus 532 ~~~--~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~-------~~ 602 (642)
.+. + ...+++...++...|+..+. +.|-.|++.|.++..+..+++ ..
T Consensus 1299 ~~~~yG------s~lTal~VH~hapiiAsGs~------------------q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1299 AHWEYG------SALTALTVHEHAPIIASGSA------------------QLIKIYSLSGEQLNIIKYNPGFMGQRIGSV 1354 (1387)
T ss_pred eccccC------ccceeeeeccCCCeeeecCc------------------ceEEEEecChhhhcccccCcccccCcCCCc
Confidence 111 1 01456677777775554443 178888888877665554332 23
Q ss_pred CCcEEecCCceEEee
Q 039497 603 GTPAWHPGNQLDLGK 617 (642)
Q Consensus 603 ~~~~~s~dg~~~~~~ 617 (642)
..++|+|-..+++..
T Consensus 1355 scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1355 SCLAFHPHRLLLAAG 1369 (1387)
T ss_pred ceeeecchhHhhhhc
Confidence 567777776555443
No 424
>PHA02713 hypothetical protein; Provisional
Probab=57.96 E-value=2.9e+02 Score=30.28 Aligned_cols=149 Identities=9% Similarity=0.026 Sum_probs=72.4
Q ss_pred CCCCCeEEEEeCCCC---ceeEEEEECCCCccccceeeCCCCCCcccce-eEecCCCEEEEEecCCCC-C----------
Q 039497 444 SPDGKFLVFRSGRSG---HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP-SWSPKGDLIAFSSNRHNP-D---------- 508 (642)
Q Consensus 444 SpDg~~l~~~~~~~g---~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~-~~spdG~~l~~~~~~~~~-~---------- 508 (642)
.-+| .|+.....++ ...+..+|..+.++ ..+...+...... .-.-+|+ ||..+..... .
T Consensus 349 ~~~g-~IYviGG~~~~~~~~sve~Ydp~~~~W----~~~~~mp~~r~~~~~~~~~g~-IYviGG~~~~~~~~~~~~~~~~ 422 (557)
T PHA02713 349 VIDD-TIYAIGGQNGTNVERTIECYTMGDDKW----KMLPDMPIALSSYGMCVLDQY-IYIIGGRTEHIDYTSVHHMNSI 422 (557)
T ss_pred EECC-EEEEECCcCCCCCCceEEEEECCCCeE----EECCCCCcccccccEEEECCE-EEEEeCCCcccccccccccccc
Confidence 3355 4544443322 23688999998875 6655544322222 2233555 5554432210 0
Q ss_pred -----CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEE
Q 039497 509 -----NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLY 583 (642)
Q Consensus 509 -----~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 583 (642)
......+..||+.+.+.+.+...... ........-+|+ ||+.....+.. .....+.
T Consensus 423 ~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~--------r~~~~~~~~~~~-IYv~GG~~~~~----------~~~~~ve 483 (557)
T PHA02713 423 DMEEDTHSSNKVIRYDTVNNIWETLPNFWTG--------TIRPGVVSHKDD-IYVVCDIKDEK----------NVKTCIF 483 (557)
T ss_pred cccccccccceEEEECCCCCeEeecCCCCcc--------cccCcEEEECCE-EEEEeCCCCCC----------ccceeEE
Confidence 00135689999998888766542211 112223344565 55554321110 0012578
Q ss_pred EEEcCC-CceeeccCCCCCC-CCcEEecCCceEEee
Q 039497 584 VVKLDG-SGLRRLTWNGYEN-GTPAWHPGNQLDLGK 617 (642)
Q Consensus 584 ~~~~~~-~~~~~lt~~~~~~-~~~~~s~dg~~~~~~ 617 (642)
.||... .+-+.+......- ..-.-.-+|+.++..
T Consensus 484 ~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~G 519 (557)
T PHA02713 484 RYNTNTYNGWELITTTESRLSALHTILHDNTIMMLH 519 (557)
T ss_pred EecCCCCCCeeEccccCcccccceeEEECCEEEEEe
Confidence 889887 6666665433211 111223367777643
No 425
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=56.85 E-value=1.6e+02 Score=30.91 Aligned_cols=140 Identities=10% Similarity=0.129 Sum_probs=74.5
Q ss_pred cEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeE---------ecCCCEEEEEecCCCCCCCC
Q 039497 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW---------SPKGDLIAFSSNRHNPDNVE 511 (642)
Q Consensus 441 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~---------spdG~~l~~~~~~~~~~~~~ 511 (642)
+....+.+.|+|.... ....||.+|+.-|+. +..-.-+.. .-+.| .+.+. |+-.+...
T Consensus 472 ~mlh~~dssli~~dg~-~~~kLykmDIErGkv---veeW~~~dd--vvVqy~p~~kf~qmt~eqt-lvGlS~~s------ 538 (776)
T COG5167 472 IMLHDNDSSLIYLDGG-ERDKLYKMDIERGKV---VEEWDLKDD--VVVQYNPYFKFQQMTDEQT-LVGLSDYS------ 538 (776)
T ss_pred ceeecCCcceEEecCC-Ccccceeeeccccee---eeEeecCCc--ceeecCCchhHHhcCccce-EEeecccc------
Confidence 4444455566666532 345899999998885 333222111 12233 33433 44333332
Q ss_pred ceeEEEEeCC--CCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC
Q 039497 512 AFSLYVIKPD--GSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589 (642)
Q Consensus 512 ~~~l~~~d~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 589 (642)
|+++|.. +.++.........+ ++ .+.+.. .-...+|+..+..+ +|-+||.-|
T Consensus 539 ---vFrIDPR~~gNKi~v~esKdY~t-Kn----~Fss~~-tTesGyIa~as~kG-----------------DirLyDRig 592 (776)
T COG5167 539 ---VFRIDPRARGNKIKVVESKDYKT-KN----KFSSGM-TTESGYIAAASRKG-----------------DIRLYDRIG 592 (776)
T ss_pred ---eEEecccccCCceeeeeehhccc-cc----cccccc-cccCceEEEecCCC-----------------ceeeehhhc
Confidence 8999874 33333322222111 00 111222 22334677777654 788888666
Q ss_pred Cc-eeeccCCCCCCCCcEEecCCceE-EeecC
Q 039497 590 SG-LRRLTWNGYENGTPAWHPGNQLD-LGKLR 619 (642)
Q Consensus 590 ~~-~~~lt~~~~~~~~~~~s~dg~~~-~~~~~ 619 (642)
.. .+.|..-+-.+..+..+.+|+++ +++.+
T Consensus 593 ~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 593 KRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred chhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 54 45555555567788999999987 45533
No 426
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=56.56 E-value=82 Score=25.61 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=17.5
Q ss_pred CCceeeeeecCCCEEEEEEcCCC
Q 039497 373 RTAFYNSWSPTEKHVIYTSTGPI 395 (642)
Q Consensus 373 ~~~~~~~~spdg~~l~~~~~~~~ 395 (642)
++...=.|||||++|-|+-+...
T Consensus 68 GGtHvHvfSpDG~~lSFTYNDhV 90 (122)
T PF12566_consen 68 GGTHVHVFSPDGSWLSFTYNDHV 90 (122)
T ss_pred CCccceEECCCCCEEEEEecchh
Confidence 34445589999999999986543
No 427
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=55.46 E-value=74 Score=32.57 Aligned_cols=68 Identities=13% Similarity=0.271 Sum_probs=41.4
Q ss_pred eEeeCC-eEEEE-EecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEe-ccCCceeeEEE
Q 039497 197 TWSGDS-TIYFH-RQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATR-RKNRNFRHIEI 273 (642)
Q Consensus 197 ~wspdg-~~~~~-~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~-~~~~~~~~i~~ 273 (642)
.=||+| .++|+ .....|.+.|+.+++-..+ ...++..++ .++-+||+.++|... ........+++
T Consensus 313 vrSPNGEDvLYvF~~~~~g~~~Ll~YN~I~k~-------v~tPi~chG-----~alf~DG~l~~fra~~~EptrvHp~Qi 380 (448)
T PF12458_consen 313 VRSPNGEDVLYVFYAREEGRYLLLPYNLIRKE-------VATPIICHG-----YALFEDGRLVYFRAEGDEPTRVHPMQI 380 (448)
T ss_pred ecCCCCceEEEEEEECCCCcEEEEechhhhhh-------hcCCeeccc-----eeEecCCEEEEEecCCCCcceecccee
Confidence 336888 34433 2356788899999876542 334555555 456689998888543 22333445666
Q ss_pred EEe
Q 039497 274 YDL 276 (642)
Q Consensus 274 ~d~ 276 (642)
|..
T Consensus 381 WqT 383 (448)
T PF12458_consen 381 WQT 383 (448)
T ss_pred ecC
Confidence 654
No 428
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=55.31 E-value=2e+02 Score=27.72 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=37.2
Q ss_pred CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeE
Q 039497 383 TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNL 462 (642)
Q Consensus 383 dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l 462 (642)
.++.|++.+ +..+.++.+.. .. ....+.... .+..+...|+-+.++..++ ..|
T Consensus 6 ~~~~L~vGt--------~~Gl~~~~~~~--------~~-----~~~~i~~~~--~I~ql~vl~~~~~llvLsd----~~l 58 (275)
T PF00780_consen 6 WGDRLLVGT--------EDGLYVYDLSD--------PS-----KPTRILKLS--SITQLSVLPELNLLLVLSD----GQL 58 (275)
T ss_pred CCCEEEEEE--------CCCEEEEEecC--------Cc-----cceeEeecc--eEEEEEEecccCEEEEEcC----Ccc
Confidence 567788876 23477777732 11 333333322 3667778887777777764 478
Q ss_pred EEEECCCC
Q 039497 463 FVLDAVNG 470 (642)
Q Consensus 463 ~~~d~~~g 470 (642)
+.+++..-
T Consensus 59 ~~~~L~~l 66 (275)
T PF00780_consen 59 YVYDLDSL 66 (275)
T ss_pred EEEEchhh
Confidence 88887643
No 429
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=54.89 E-value=29 Score=22.01 Aligned_cols=31 Identities=23% Similarity=0.087 Sum_probs=25.1
Q ss_pred ccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497 544 INHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS 590 (642)
Q Consensus 544 ~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 590 (642)
+..++|++++++||++.... ..|++.+++|.
T Consensus 11 ~~~la~d~~~~~lYw~D~~~----------------~~I~~~~~~g~ 41 (43)
T smart00135 11 PNGLAVDWIEGRLYWTDWGL----------------DVIEVANLDGT 41 (43)
T ss_pred cCEEEEeecCCEEEEEeCCC----------------CEEEEEeCCCC
Confidence 45699999999999998654 27999888875
No 430
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=53.91 E-value=2.5e+02 Score=29.09 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=53.8
Q ss_pred CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC---------------------------------C
Q 039497 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD---------------------------------G 482 (642)
Q Consensus 436 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~---------------------------------~ 482 (642)
.....+.|||+|+.+...+. +..|+..+..+|+.+ +.+.. .
T Consensus 202 t~pts~Efsp~g~qistl~~---DrkVR~F~~KtGklv---qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~ 275 (558)
T KOG0882|consen 202 TEPTSFEFSPDGAQISTLNP---DRKVRGFVFKTGKLV---QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHG 275 (558)
T ss_pred cCccceEEccccCcccccCc---ccEEEEEEeccchhh---hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhc
Confidence 45567899999999877663 346777788887751 11111 0
Q ss_pred CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEee
Q 039497 483 PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH 529 (642)
Q Consensus 483 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 529 (642)
........|...|++|+|..--+ |.++++.++...++.
T Consensus 276 ~~~~~~~~fdes~~flly~t~~g---------ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 276 STVGTNAVFDESGNFLLYGTILG---------IKVINLDTNTVVRIL 313 (558)
T ss_pred CcccceeEEcCCCCEEEeeccee---------EEEEEeecCeEEEEe
Confidence 11123458999999999987655 889999888776654
No 431
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=53.65 E-value=2.4e+02 Score=28.10 Aligned_cols=97 Identities=16% Similarity=0.091 Sum_probs=50.6
Q ss_pred CCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE
Q 039497 447 GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526 (642)
Q Consensus 447 g~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 526 (642)
+.+|+.+.+ ..|++++++..+. +...............+.-+++|++..... ...++.|+.+..+..
T Consensus 98 ~~~lv~~~g----~~l~v~~l~~~~~---l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~------sv~~~~~~~~~~~l~ 164 (321)
T PF03178_consen 98 NGRLVVAVG----NKLYVYDLDNSKT---LLKKAFYDSPFYITSLSVFKNYILVGDAMK------SVSLLRYDEENNKLI 164 (321)
T ss_dssp TTEEEEEET----TEEEEEEEETTSS---EEEEEEE-BSSSEEEEEEETTEEEEEESSS------SEEEEEEETTTE-EE
T ss_pred CCEEEEeec----CEEEEEEccCccc---chhhheecceEEEEEEeccccEEEEEEccc------CEEEEEEEccCCEEE
Confidence 445666663 3677777765551 133222211112234444467888877654 345566676555566
Q ss_pred EeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 527 RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 527 ~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
.+....... .+.++.|-+|++.++.+...+
T Consensus 165 ~va~d~~~~-------~v~~~~~l~d~~~~i~~D~~g 194 (321)
T PF03178_consen 165 LVARDYQPR-------WVTAAEFLVDEDTIIVGDKDG 194 (321)
T ss_dssp EEEEESS-B-------EEEEEEEE-SSSEEEEEETTS
T ss_pred EEEecCCCc-------cEEEEEEecCCcEEEEEcCCC
Confidence 665533222 456777876777555555443
No 432
>PLN02193 nitrile-specifier protein
Probab=53.12 E-value=3.1e+02 Score=29.22 Aligned_cols=122 Identities=11% Similarity=0.054 Sum_probs=59.7
Q ss_pred eeEEEEECCCCccccceeeCCCCC----CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCC
Q 039497 460 KNLFVLDAVNGEFNGDIRQLTDGP----WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEG 535 (642)
Q Consensus 460 ~~l~~~d~~~g~~~~~~~~l~~~~----~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 535 (642)
..++.+|+.+.+. ..+.... .........-+++.+++....+. ....++++|+.+.+.+++...+.
T Consensus 294 ~~~~~yd~~t~~W----~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~----~~~dv~~yD~~t~~W~~~~~~g~-- 363 (470)
T PLN02193 294 KTLDSYNIVDKKW----FHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC----EVDDVHYYDPVQDKWTQVETFGV-- 363 (470)
T ss_pred ceEEEEECCCCEE----EeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC----ccCceEEEECCCCEEEEeccCCC--
Confidence 3688999988775 5443211 11111222336665544443221 24669999999988887754211
Q ss_pred CCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccC
Q 039497 536 SGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW 597 (642)
Q Consensus 536 ~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~ 597 (642)
.+..| ....+..-+++.++|....... +......-....++|.+|+.+..-..+..
T Consensus 364 -~P~~R--~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 364 -RPSER--SVFASAAVGKHIVIFGGEIAMD---PLAHVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred -CCCCc--ceeEEEEECCEEEEECCccCCc---cccccCccceeccEEEEEcCcCEEEEccc
Confidence 11111 1122233355544444322100 00000000012379999999887776664
No 433
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=51.95 E-value=3.3e+02 Score=29.17 Aligned_cols=139 Identities=14% Similarity=0.089 Sum_probs=73.9
Q ss_pred eEEEEECCCCccccceeeCCCC---CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCC
Q 039497 461 NLFVLDAVNGEFNGDIRQLTDG---PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSG 537 (642)
Q Consensus 461 ~l~~~d~~~g~~~~~~~~l~~~---~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 537 (642)
+|+.+|+.+++. ..+... +-.-...+..-.|++|++....+.. ....+.+|++|+.+.+..++...+..-
T Consensus 140 ~l~~~d~~t~~W----~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~-~~~~ndl~i~d~~~~~W~~~~~~g~~P-- 212 (482)
T KOG0379|consen 140 ELHSLDLSTRTW----SLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGT-GDSLNDLHIYDLETSTWSELDTQGEAP-- 212 (482)
T ss_pred heEeccCCCCcE----EEecCcCCCCCCcccceEEEECCEEEEECCccCc-ccceeeeeeeccccccceecccCCCCC--
Confidence 899999999885 333221 1111222333345666666554432 125688999999988877665433221
Q ss_pred CcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCC-----CCCCcEEecCCc
Q 039497 538 DVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGY-----ENGTPAWHPGNQ 612 (642)
Q Consensus 538 ~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~-----~~~~~~~s~dg~ 612 (642)
. ....+..-.-.++.+++.....+.. ...++|.+|+.+.+-..+...+. ......++.+.-
T Consensus 213 -~--pR~gH~~~~~~~~~~v~gG~~~~~~-----------~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~ 278 (482)
T KOG0379|consen 213 -S--PRYGHAMVVVGNKLLVFGGGDDGDV-----------YLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHL 278 (482)
T ss_pred -C--CCCCceEEEECCeEEEEeccccCCc-----------eecceEeeecccceeeeccccCCCCCCcceeeeEEECCEE
Confidence 1 1222333334555555555442211 24599999999866554443321 223444445544
Q ss_pred eEEeecCC
Q 039497 613 LDLGKLRL 620 (642)
Q Consensus 613 ~~~~~~~~ 620 (642)
+++.....
T Consensus 279 ~l~gG~~~ 286 (482)
T KOG0379|consen 279 LLFGGGTD 286 (482)
T ss_pred EEEcCCcc
Confidence 45554444
No 434
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.88 E-value=4e+02 Score=30.16 Aligned_cols=230 Identities=14% Similarity=0.096 Sum_probs=108.9
Q ss_pred EEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEE-EcCCCcccCCC-eEEEEEEEeec
Q 039497 336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYT-STGPIFQSERA-TVQIARVSFQL 412 (642)
Q Consensus 336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~-~~~~~~~~~~~-~~~l~~~~~~~ 412 (642)
.|++.+..|++... .+.|+.++-.-...+-... ...+...-|.-+++.++++ ..+. ++.. -+++|+++..
T Consensus 30 c~~s~~~~vvigt~---~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~---~~np~llkiw~lek~- 102 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTA---DGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDE---QGNPVLLKIWDLEKV- 102 (933)
T ss_pred EEcCCCceEEEeec---cccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecC---CCCceEEEEeccccc-
Confidence 68888888888643 4677776633221111111 2223334455556444443 3221 1122 5788888651
Q ss_pred CCCCCCCC-CccccceEEcc--cc-CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC--CCccccceeeCCCCCCcc
Q 039497 413 DPSDDNNR-EEIPCDVKILT--KE-ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV--NGEFNGDIRQLTDGPWID 486 (642)
Q Consensus 413 ~~~~~~~~-~~~~~~~~~l~--~~-~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~--~g~~~~~~~~l~~~~~~~ 486 (642)
+ + +. .+..+..+..+ .+ .......+++|.|=+.|+..- .+|.--.+.=|+. -|.. ......+...+
T Consensus 103 ~-~---n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf-~nG~V~~~~GDi~RDrgsr---~~~~~~~~~pI 174 (933)
T KOG2114|consen 103 D-K---NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGF-TNGLVICYKGDILRDRGSR---QDYSHRGKEPI 174 (933)
T ss_pred C-C---CCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEe-cCcEEEEEcCcchhccccc---eeeeccCCCCc
Confidence 1 0 11 11000112222 11 013345567888866665543 3343222322321 1211 23334455677
Q ss_pred cceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcc
Q 039497 487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVM 566 (642)
Q Consensus 487 ~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~ 566 (642)
+...+-.||+.++|...... |.+|.+.+..+.......... .....++++-...++.+...
T Consensus 175 TgL~~~~d~~s~lFv~Tt~~--------V~~y~l~gr~p~~~~ld~~G~-------~lnCss~~~~t~qfIca~~e---- 235 (933)
T KOG2114|consen 175 TGLALRSDGKSVLFVATTEQ--------VMLYSLSGRTPSLKVLDNNGI-------SLNCSSFSDGTYQFICAGSE---- 235 (933)
T ss_pred eeeEEecCCceeEEEEecce--------eEEEEecCCCcceeeeccCCc-------cceeeecCCCCccEEEecCc----
Confidence 88899999998777776543 777777655522222222222 22334444333324444322
Q ss_pred cCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceE
Q 039497 567 AEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLD 614 (642)
Q Consensus 567 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~ 614 (642)
-|+.|+.++.. ...+...+.-.-.-|..-|.++
T Consensus 236 --------------~l~fY~sd~~~-~cfaf~~g~kk~~~~~~~g~~L 268 (933)
T KOG2114|consen 236 --------------FLYFYDSDGRG-PCFAFEVGEKKEMLVFSFGLLL 268 (933)
T ss_pred --------------eEEEEcCCCcc-eeeeecCCCeEEEEEEecCEEE
Confidence 68888777543 3344432322344555555555
No 435
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=51.06 E-value=2.5e+02 Score=27.49 Aligned_cols=118 Identities=8% Similarity=-0.024 Sum_probs=64.4
Q ss_pred cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEE
Q 039497 372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451 (642)
Q Consensus 372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~ 451 (642)
......+.++ +++++++. ....++|.++... . .++.+..-. -.-....|.-.|++.+
T Consensus 86 ~~l~~Dv~vs--e~yvyvad-------~ssGL~IvDIS~P-------~------sP~~~~~ln-t~gyaygv~vsGn~aY 142 (370)
T COG5276 86 RDLFADVRVS--EEYVYVAD-------WSSGLRIVDISTP-------D------SPTLIGFLN-TDGYAYGVYVSGNYAY 142 (370)
T ss_pred hhhhheeEec--ccEEEEEc-------CCCceEEEeccCC-------C------Ccceecccc-CCceEEEEEecCCEEE
Confidence 3445566666 45666655 3788999999761 1 233332222 1112234455688888
Q ss_pred EEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce
Q 039497 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL 525 (642)
Q Consensus 452 ~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~ 525 (642)
.+...+ -+.++|+.+.+.+...-+.....+..+..+.| |++-+.+..+++ |.+.|+.....
T Consensus 143 Vadldd---gfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~G--------L~ivDVSnp~s 203 (370)
T COG5276 143 VADLDD---GFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGG--------LTIVDVSNPHS 203 (370)
T ss_pred EeeccC---cEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCC--------eEEEEccCCCC
Confidence 777554 37778887665310011112222333456666 776555544443 99999976543
No 436
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=51.00 E-value=74 Score=24.66 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=25.5
Q ss_pred eeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeC
Q 039497 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP 520 (642)
Q Consensus 477 ~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~ 520 (642)
+.+...-.....+.+|||+++|+.++.... .|+++..
T Consensus 47 ~~va~g~~~aNGI~~s~~~k~lyVa~~~~~-------~I~vy~~ 83 (86)
T PF01731_consen 47 KVVASGFSFANGIAISPDKKYLYVASSLAH-------SIHVYKR 83 (86)
T ss_pred EEeeccCCCCceEEEcCCCCEEEEEeccCC-------eEEEEEe
Confidence 444444345578899999999998887653 3666654
No 437
>PRK13684 Ycf48-like protein; Provisional
Probab=50.84 E-value=2.8e+02 Score=27.98 Aligned_cols=105 Identities=13% Similarity=0.061 Sum_probs=51.9
Q ss_pred cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEE
Q 039497 372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451 (642)
Q Consensus 372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~ 451 (642)
...+..+.+.|++..+++...+ .++.... + ++. ....+..........+.+.|+|+.++
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G----------~i~~s~~--~-----gg~----tW~~~~~~~~~~l~~i~~~~~g~~~~ 230 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRG----------NFYSTWE--P-----GQT----AWTPHQRNSSRRLQSMGFQPDGNLWM 230 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCc----------eEEEEcC--C-----CCC----eEEEeeCCCcccceeeeEcCCCCEEE
Confidence 3456778888988766554422 2222211 1 221 23333333324566778899988766
Q ss_pred EEeCCCCceeEEEEECCCCccccceeeCCCC----CCcccceeEecCCCEEEEEecCC
Q 039497 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG----PWIDTMPSWSPKGDLIAFSSNRH 505 (642)
Q Consensus 452 ~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~----~~~~~~~~~spdG~~l~~~~~~~ 505 (642)
+... | .+.+-..+.|+. -+.+... ......+.+.|+++. +.....+
T Consensus 231 vg~~--G--~~~~~s~d~G~s---W~~~~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G 280 (334)
T PRK13684 231 LARG--G--QIRFNDPDDLES---WSKPIIPEITNGYGYLDLAYRTPGEI-WAGGGNG 280 (334)
T ss_pred EecC--C--EEEEccCCCCCc---cccccCCccccccceeeEEEcCCCCE-EEEcCCC
Confidence 5432 2 333323455553 2222211 123455678888774 4444433
No 438
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=50.78 E-value=82 Score=24.39 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=26.4
Q ss_pred ceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEec
Q 039497 131 KFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQES 181 (642)
Q Consensus 131 ~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (642)
+.+.+...-.......+|||+++|..++... ..|+++...
T Consensus 45 ~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~-----------~~I~vy~~~ 84 (86)
T PF01731_consen 45 EVKVVASGFSFANGIAISPDKKYLYVASSLA-----------HSIHVYKRH 84 (86)
T ss_pred EeEEeeccCCCCceEEEcCCCCEEEEEeccC-----------CeEEEEEec
Confidence 3445555545566789999999988776433 357776653
No 439
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=50.64 E-value=3.2e+02 Score=28.56 Aligned_cols=32 Identities=31% Similarity=0.330 Sum_probs=24.1
Q ss_pred CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC
Q 039497 484 WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS 523 (642)
Q Consensus 484 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~ 523 (642)
+....++.||+|++|++....+. +++++.+-.
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~--------l~v~ssDf~ 248 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGN--------LWVVSSDFS 248 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCC--------EEEEECccc
Confidence 45677899999999999987654 777665433
No 440
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=50.22 E-value=2.6e+02 Score=27.40 Aligned_cols=172 Identities=12% Similarity=0.068 Sum_probs=87.3
Q ss_pred CceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE
Q 039497 352 LNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI 429 (642)
Q Consensus 352 ~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 429 (642)
....|.++|+.+.....+.. +..-.+..|.-.|+++++... +..+-++++... .... ..-+
T Consensus 104 ~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadl-------ddgfLivdvsdp-------ssP~---lagr 166 (370)
T COG5276 104 WSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADL-------DDGFLIVDVSDP-------SSPQ---LAGR 166 (370)
T ss_pred CCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeec-------cCcEEEEECCCC-------CCce---eeee
Confidence 34678888988766444433 222344556667888877763 455666776541 1111 2222
Q ss_pred ccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCC
Q 039497 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDN 509 (642)
Q Consensus 430 l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~ 509 (642)
..... +...+++.| |++-+.+... + .|.++|+..... ++.+..-.........++.+++.+...-...
T Consensus 167 ya~~~-~d~~~v~IS--Gn~AYvA~~d-~--GL~ivDVSnp~s---Pvli~~~n~g~g~~sv~vsdnr~y~vvy~eg--- 234 (370)
T COG5276 167 YALPG-GDTHDVAIS--GNYAYVAWRD-G--GLTIVDVSNPHS---PVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG--- 234 (370)
T ss_pred eccCC-CCceeEEEe--cCeEEEEEeC-C--CeEEEEccCCCC---CeEEEEEecCCceEEEEecCCeeEEEEcccc---
Confidence 22222 333466777 4554444322 2 588888876554 3444322221112233444445554444433
Q ss_pred CCceeEEEEeCCCCceEEee-ecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497 510 VEAFSLYVIKPDGSGLRRIH-VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA 564 (642)
Q Consensus 510 ~~~~~l~~~d~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~ 564 (642)
+.+.|.++.....+. ....++ .+..-.+.--|++.|......+
T Consensus 235 -----vlivd~s~~ssp~~~gsyet~~-------p~~~s~v~Vs~~~~Yvadga~g 278 (370)
T COG5276 235 -----VLIVDVSGPSSPTVFGSYETSN-------PVSISTVPVSGEYAYVADGAKG 278 (370)
T ss_pred -----eEEEecCCCCCceEeeccccCC-------cccccceecccceeeeeccccC
Confidence 888888775533332 212222 2222245666777777666554
No 441
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=49.72 E-value=32 Score=19.91 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=15.9
Q ss_pred CCcccceeEecCCCEEEEEecCC
Q 039497 483 PWIDTMPSWSPKGDLIAFSSNRH 505 (642)
Q Consensus 483 ~~~~~~~~~spdG~~l~~~~~~~ 505 (642)
...+..+.|+++++.++..+.++
T Consensus 12 ~~~i~~~~~~~~~~~~~~~~~d~ 34 (40)
T smart00320 12 TGPVTSVAFSPDGKYLASASDDG 34 (40)
T ss_pred CCceeEEEECCCCCEEEEecCCC
Confidence 34566788999888776666554
No 442
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=49.13 E-value=3.7e+02 Score=28.86 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=31.8
Q ss_pred ceeEEEEECCCCccccceeeCCCCC--------CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE
Q 039497 459 HKNLFVLDAVNGEFNGDIRQLTDGP--------WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526 (642)
Q Consensus 459 ~~~l~~~d~~~g~~~~~~~~l~~~~--------~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 526 (642)
...|+-+|+.+|+. +-...... .........-.|..|++.+.++. |+.+|.++|+..
T Consensus 365 ~G~l~AlD~~tG~~---~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~--------l~ald~~tG~~l 429 (488)
T cd00216 365 KGGLAALDPKTGKV---VWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGY--------FRAFDATTGKEL 429 (488)
T ss_pred ceEEEEEeCCCCcE---eeEeeCCccccccccCCcccCcceEecCCeEEEECCCCe--------EEEEECCCCcee
Confidence 34799999999985 22221110 00000011224566666665443 999999988764
No 443
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=49.01 E-value=2e+02 Score=25.92 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=50.5
Q ss_pred cCCCCEEEEEec------CCCceeEEEEECCCCCeeEEeec-----CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEE
Q 039497 338 SPDGGLIVFNHD------FELNAGIKIAKSDGSKRWTLIKD-----RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIA 406 (642)
Q Consensus 338 spdg~~l~~~~~------~~~~~~l~~~d~~~~~~~~l~~~-----~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~ 406 (642)
|.+|++-|++.. ..+-+.||++++.++....|... -..-.+.|.-|...++.......-....+.+.++
T Consensus 66 s~~~~~saciegkg~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~ 145 (200)
T PF15525_consen 66 SENGKYSACIEGKGPEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKY 145 (200)
T ss_pred ccCCceeEEEEcCCCccccccceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEE
Confidence 556777677543 24568899999999988766541 2244678988888777777655555567777777
Q ss_pred EEEe
Q 039497 407 RVSF 410 (642)
Q Consensus 407 ~~~~ 410 (642)
.+..
T Consensus 146 nl~t 149 (200)
T PF15525_consen 146 NLNT 149 (200)
T ss_pred EccC
Confidence 7765
No 444
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=48.70 E-value=30 Score=38.60 Aligned_cols=142 Identities=15% Similarity=0.091 Sum_probs=82.7
Q ss_pred CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeE
Q 039497 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSL 515 (642)
Q Consensus 436 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l 515 (642)
......+||-+.++|+..+. .++|.++++.+|.. ......+...+..+.-|-||..++..+....+ -.
T Consensus 1102 ~~fTc~afs~~~~hL~vG~~---~Geik~~nv~sG~~---e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P------ls 1169 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGSH---AGEIKIFNVSSGSM---EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP------LS 1169 (1516)
T ss_pred cceeeEEeecCCceEEeeec---cceEEEEEccCccc---cccccccccccccccccCCcceeeeeccccCc------hH
Confidence 45667899999999988774 34899999999985 33344455566777888999988877765431 23
Q ss_pred EEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce--e
Q 039497 516 YVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL--R 593 (642)
Q Consensus 516 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~ 593 (642)
.+|++... ....+... ....+.||..-..-++.. .+. ...+||+.++.+ +
T Consensus 1170 aLW~~~s~-~~~~Hsf~----------ed~~vkFsn~~q~r~~gt-~~d----------------~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1170 ALWDASST-GGPRHSFD----------EDKAVKFSNSLQFRALGT-EAD----------------DALLYDVQTCSPLQT 1221 (1516)
T ss_pred HHhccccc-cCcccccc----------ccceeehhhhHHHHHhcc-ccc----------------ceEEEecccCcHHHH
Confidence 45555431 11111111 113456665433222222 221 556677776542 2
Q ss_pred eccCC---CCCCCCcEEecCCceEEee
Q 039497 594 RLTWN---GYENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 594 ~lt~~---~~~~~~~~~s~dg~~~~~~ 617 (642)
-|+.. .+......|||+-.+++..
T Consensus 1222 ylt~~~~~~y~~n~a~FsP~D~LIlnd 1248 (1516)
T KOG1832|consen 1222 YLTDTVTSSYSNNLAHFSPCDTLILND 1248 (1516)
T ss_pred hcCcchhhhhhccccccCCCcceEeeC
Confidence 24432 2344566889888777653
No 445
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=48.26 E-value=3.7e+02 Score=28.72 Aligned_cols=214 Identities=13% Similarity=0.131 Sum_probs=90.9
Q ss_pred EEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecC----CceeeeeecCCCEEEEEEcCCCcc----cCCCeEEEEE
Q 039497 336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDR----TAFYNSWSPTEKHVIYTSTGPIFQ----SERATVQIAR 407 (642)
Q Consensus 336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~----~~~~~~~spdg~~l~~~~~~~~~~----~~~~~~~l~~ 407 (642)
...++|..++... ..+..+|..|.......... .-+.+...|+|+.|+.+....... ...-.=.|..
T Consensus 154 ~~l~nG~ll~~~~-----~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ive 228 (477)
T PF05935_consen 154 KQLPNGNLLIGSG-----NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVE 228 (477)
T ss_dssp EE-TTS-EEEEEB-----TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEE
T ss_pred eEcCCCCEEEecC-----CceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEE
Confidence 4578887665533 67888898877554443322 246788899999998887311000 0000111233
Q ss_pred EEeecCCC----------CCCCCCccccceEEcccc-------CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCC
Q 039497 408 VSFQLDPS----------DDNNREEIPCDVKILTKE-------ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG 470 (642)
Q Consensus 408 ~~~~~~~~----------~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g 470 (642)
++. .|+ ..+.+.... ....+... ......++.+.+....|++.+. ....|+.+|..++
T Consensus 229 vd~--tG~vv~~wd~~d~ld~~~~~~~-~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR--~~s~V~~Id~~t~ 303 (477)
T PF05935_consen 229 VDP--TGEVVWEWDFFDHLDPYRDTVL-KPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSR--HQSAVIKIDYRTG 303 (477)
T ss_dssp E-T--TS-EEEEEEGGGTS-TT--TTG-GT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEET--TT-EEEEEE-TTS
T ss_pred ECC--CCCEEEEEehHHhCCccccccc-ccccccccccCCCCCCccccCccEEeCCCCeEEEEcC--cceEEEEEECCCC
Confidence 322 111 000000000 00000000 0012334667775556666654 2347899997777
Q ss_pred ccccceeeCC-CC-------------------------------CCcccceeEecCC---CEEEEEecCCCCCC------
Q 039497 471 EFNGDIRQLT-DG-------------------------------PWIDTMPSWSPKG---DLIAFSSNRHNPDN------ 509 (642)
Q Consensus 471 ~~~~~~~~l~-~~-------------------------------~~~~~~~~~spdG---~~l~~~~~~~~~~~------ 509 (642)
+. ..+. .+ .+.-+.+.+.|+| ..++|-........
T Consensus 304 ~i----~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH~~~~~~~g~~~~l~vFDNg~~r~~~~~~~~~ 379 (477)
T PF05935_consen 304 KI----KWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQHTAHLIPDGPQGNLLVFDNGNGRGYGQPAYVS 379 (477)
T ss_dssp -E----EEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-EEEEE-TTS---SEEEEE--TTGGGS--SSCC
T ss_pred cE----EEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcccccccceEEcCCCCeEEEEEEECCCCCCCCCccccc
Confidence 74 3221 11 0112346788999 88888876543211
Q ss_pred ----CCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCC-CCEEEEEEecC
Q 039497 510 ----VEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD-GEWLLFTANLG 563 (642)
Q Consensus 510 ----~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~D-g~~l~~~~~~~ 563 (642)
..+.-.|.+|.+.+..+++...+...-...=-..+..+..-++ |..|+.....+
T Consensus 380 ~~~~~Sr~v~Y~Ide~~~T~~~vw~y~~~~g~~~yS~~~s~aq~l~n~gn~li~~g~~~ 438 (477)
T PF05935_consen 380 PKDNYSRAVEYRIDENKMTVEQVWEYGKPRGNEFYSPIVSSAQYLPNKGNTLITSGMAG 438 (477)
T ss_dssp G-----EEEEEEEETTTTEEEEEEEESGGGGGGG--SS--EEEEETTTTEEEEEEEEET
T ss_pred cccccceEEEEEecCCCceEEEEEEeCCCCCCCccCCcceeeEEecCCCCEEEEeCccc
Confidence 1223345566666667766654322000000013456677888 88887666554
No 446
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=47.92 E-value=2.9e+02 Score=30.31 Aligned_cols=54 Identities=19% Similarity=0.187 Sum_probs=35.2
Q ss_pred EcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcC-CCceeeccCCCCCCCCcEEecCCceEE
Q 039497 549 FSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLD-GSGLRRLTWNGYENGTPAWHPGNQLDL 615 (642)
Q Consensus 549 ~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~lt~~~~~~~~~~~s~dg~~~~ 615 (642)
...-.+.+||....... ...+||++... .++..+||..++. .+..++.+=..|+
T Consensus 511 VdE~~~LVYf~gt~d~P------------lE~hLyvvsye~~g~~~rlt~~g~s-h~~~l~~~~d~fv 565 (867)
T KOG2281|consen 511 VDEVRKLVYFVGTKDTP------------LEHHLYVVSYENPGEIARLTEPGYS-HSCELDQQCDHFV 565 (867)
T ss_pred ecccceEEEEEccCCCC------------ceeeEEEEEEecCCceeeccCCCcc-cchhhhhhhhhHh
Confidence 34445677888876643 35699999987 8889999987654 3344444433443
No 447
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=47.67 E-value=3e+02 Score=27.45 Aligned_cols=124 Identities=12% Similarity=0.165 Sum_probs=0.0
Q ss_pred CCeEEEEeCCCCc---eeEEEEECCCCccccce----eeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEe
Q 039497 447 GKFLVFRSGRSGH---KNLFVLDAVNGEFNGDI----RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIK 519 (642)
Q Consensus 447 g~~l~~~~~~~g~---~~l~~~d~~~g~~~~~~----~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d 519 (642)
+..|++....++. ..++.+|+.+.+ . ..+...+.......-.--+..|++...... ......++++|
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~----w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~--~~~~~~v~~yd 145 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESK----EELICETIGNLPFTFENGSACYKDGTLYVGGGNRN--GKPSNKSYLFN 145 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCc----eeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCC--CccCceEEEEc
Q ss_pred CCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc
Q 039497 520 PDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596 (642)
Q Consensus 520 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt 596 (642)
+.+.+.+.+....... .........+++..++....... ..+++.+|+....-+.+.
T Consensus 146 ~~~~~W~~~~~~p~~~-------r~~~~~~~~~~~iYv~GG~~~~~-------------~~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 146 LETQEWFELPDFPGEP-------RVQPVCVKLQNELYVFGGGSNIA-------------YTDGYKYSPKKNQWQKVA 202 (323)
T ss_pred CCCCCeeECCCCCCCC-------CCcceEEEECCEEEEEcCCCCcc-------------ccceEEEecCCCeeEECC
No 448
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=47.30 E-value=1.6e+02 Score=28.05 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=44.3
Q ss_pred ecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEE--EecCCcccCC
Q 039497 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT--ANLGAVMAEP 569 (642)
Q Consensus 492 spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~--~~~~~~~~~~ 569 (642)
.|+...|+.+..... +.+||++++.++-+.....+. .-....|--.|+.|=+. +++...
T Consensus 64 ~P~kS~vItt~Kk~G--------l~VYDLsGkqLqs~~~Gk~NN-------VDLrygF~LgG~~idiaaASdR~~~---- 124 (364)
T COG4247 64 NPDKSLVITTVKKAG--------LRVYDLSGKQLQSVNPGKYNN-------VDLRYGFQLGGQSIDIAAASDRQND---- 124 (364)
T ss_pred CcCcceEEEeeccCC--------eEEEecCCCeeeecCCCcccc-------cccccCcccCCeEEEEEecccccCC----
Confidence 566665555544433 999999998877665533322 11234566677765333 333211
Q ss_pred CCCCCCCCCCCcEEEEEcCCCceeeccCC
Q 039497 570 VSWPNQFQPYGDLYVVKLDGSGLRRLTWN 598 (642)
Q Consensus 570 ~~~~~~~~~~~~l~~~~~~~~~~~~lt~~ 598 (642)
.-.+|.+|.+.+.++.+|..
T Consensus 125 ---------~i~~y~Idp~~~~L~sitD~ 144 (364)
T COG4247 125 ---------KIVFYKIDPNPQYLESITDS 144 (364)
T ss_pred ---------eEEEEEeCCCccceeeccCC
Confidence 12455555566667777765
No 449
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=47.30 E-value=3.9e+02 Score=28.61 Aligned_cols=131 Identities=13% Similarity=0.180 Sum_probs=62.1
Q ss_pred cEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee--CCCCC-CcccceeEecCCCEEEEEecCC-----CCCCCCc
Q 039497 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ--LTDGP-WIDTMPSWSPKGDLIAFSSNRH-----NPDNVEA 512 (642)
Q Consensus 441 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~--l~~~~-~~~~~~~~spdG~~l~~~~~~~-----~~~~~~~ 512 (642)
+...+||..++... ..++.+|.. |+. +.. +.... ...+.+..-|+|+.|+...... .......
T Consensus 153 ~~~l~nG~ll~~~~-----~~~~e~D~~-G~v---~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~ 223 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-----NRLYEIDLL-GKV---IWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVE 223 (477)
T ss_dssp EEE-TTS-EEEEEB-----TEEEEE-TT---E---EEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S
T ss_pred eeEcCCCCEEEecC-----CceEEEcCC-CCE---EEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEec
Confidence 66788998776655 478999987 553 233 22221 2246678899999988887311 0001134
Q ss_pred eeEEEEeCCCCceEEeeec-CCCC------------------CCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCC
Q 039497 513 FSLYVIKPDGSGLRRIHVA-GPEG------------------SGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP 573 (642)
Q Consensus 513 ~~l~~~d~~~~~~~~l~~~-~~~~------------------~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~ 573 (642)
..|..+| .+|+....... .+-. ....|=.++.++.+.+....|++++...
T Consensus 224 D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~---------- 292 (477)
T PF05935_consen 224 DVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQ---------- 292 (477)
T ss_dssp -EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT----------
T ss_pred CEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcc----------
Confidence 5588888 56655433221 1100 0011112456788888556666665432
Q ss_pred CCCCCCCcEEEEEcCCCceeeccC
Q 039497 574 NQFQPYGDLYVVKLDGSGLRRLTW 597 (642)
Q Consensus 574 ~~~~~~~~l~~~~~~~~~~~~lt~ 597 (642)
..|+.++..++++.-+..
T Consensus 293 ------s~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 293 ------SAVIKIDYRTGKIKWILG 310 (477)
T ss_dssp -------EEEEEE-TTS-EEEEES
T ss_pred ------eEEEEEECCCCcEEEEeC
Confidence 279999977777664444
No 450
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=47.28 E-value=2.7e+02 Score=26.75 Aligned_cols=143 Identities=10% Similarity=0.042 Sum_probs=72.2
Q ss_pred EEEEecCCCceeEEEEECCCCCee-EEeec------------CCceeeeeecC--CCEEEEEEcCCCcccCCCeEEEEEE
Q 039497 344 IVFNHDFELNAGIKIAKSDGSKRW-TLIKD------------RTAFYNSWSPT--EKHVIYTSTGPIFQSERATVQIARV 408 (642)
Q Consensus 344 l~~~~~~~~~~~l~~~d~~~~~~~-~l~~~------------~~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~l~~~ 408 (642)
++|.. .+...|..+|+.+.... +.... .....+.|+-| |=+++|... ...+.+.|-.+
T Consensus 81 lYY~~--~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~-----~~~g~ivvskl 153 (250)
T PF02191_consen 81 LYYNK--YNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATE-----DNNGNIVVSKL 153 (250)
T ss_pred EEEEe--cCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecC-----CCCCcEEEEee
Confidence 56654 35688999999988765 33221 11223444444 445555553 22345666666
Q ss_pred EeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeE-EEEECCCCccccceeeCCCCCCccc
Q 039497 409 SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNL-FVLDAVNGEFNGDIRQLTDGPWIDT 487 (642)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l-~~~d~~~g~~~~~~~~l~~~~~~~~ 487 (642)
+. + ..++ ....-+.-. .....-+|--+|..-+..+......+| |.+|+.+++.......+........
T Consensus 154 d~--~------tL~v--~~tw~T~~~-k~~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~ 222 (250)
T PF02191_consen 154 DP--E------TLSV--EQTWNTSYP-KRSAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNIS 222 (250)
T ss_pred Cc--c------cCce--EEEEEeccC-chhhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeeeeccccCceE
Confidence 54 1 1110 000011111 122223666677544444433332444 7999988874111111233334556
Q ss_pred ceeEecCCCEEEEEecC
Q 039497 488 MPSWSPKGDLIAFSSNR 504 (642)
Q Consensus 488 ~~~~spdG~~l~~~~~~ 504 (642)
.+.+.|-.+.|+...+.
T Consensus 223 ~l~YNP~dk~LY~wd~G 239 (250)
T PF02191_consen 223 MLSYNPRDKKLYAWDNG 239 (250)
T ss_pred eeeECCCCCeEEEEECC
Confidence 77888888877777654
No 451
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=47.15 E-value=1.6e+02 Score=32.55 Aligned_cols=58 Identities=17% Similarity=0.056 Sum_probs=37.9
Q ss_pred cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCe
Q 039497 372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF 449 (642)
Q Consensus 372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~ 449 (642)
++....+..+|-|+-++.++ +..+.+.+++. . .. ..+.|.......+.+..|||...+
T Consensus 24 ~~~~~a~si~p~grdi~lAs--------r~gl~i~dld~--p-----~~-----ppr~l~h~tpw~vad~qws~h~a~ 81 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLAS--------RQGLYIIDLDD--P-----FT-----PPRWLHHITPWQVADVQWSPHPAK 81 (1081)
T ss_pred cCcccceeeccccchhhhhh--------hcCeEEEeccC--C-----CC-----CceeeeccCcchhcceecccCCCC
Confidence 56677888999999998877 34555555554 1 22 455554444356777888887643
No 452
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=46.20 E-value=1.7e+02 Score=27.47 Aligned_cols=83 Identities=14% Similarity=0.051 Sum_probs=50.6
Q ss_pred eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEee----e-cCC-CCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497 490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH----V-AGP-EGSGDVDRERINHVCFSADGEWLLFTANLG 563 (642)
Q Consensus 490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~----~-~~~-~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~ 563 (642)
.+..++++|+.....+. +|+||+..++...-. + ... ..........+..+.++.+|.=|+..++.
T Consensus 17 ~l~~~~~~Ll~iT~~G~--------l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng- 87 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGL--------LYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNG- 87 (219)
T ss_pred EEEeCCCEEEEEeCCCe--------EEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCC-
Confidence 45678888888877764 999999876542111 0 000 00000111245667788888877766542
Q ss_pred CcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCC
Q 039497 564 AVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN 598 (642)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~ 598 (642)
+.|.|+.+-+.-.++...
T Consensus 88 -----------------~~y~y~~~L~~W~~vsd~ 105 (219)
T PF07569_consen 88 -----------------DSYSYSPDLGCWIRVSDS 105 (219)
T ss_pred -----------------CEEEeccccceeEEeccc
Confidence 678888877777777765
No 453
>PLN02153 epithiospecifier protein
Probab=46.14 E-value=3.3e+02 Score=27.45 Aligned_cols=124 Identities=10% Similarity=0.066 Sum_probs=57.0
Q ss_pred eEEEEECCCCccccceeeCCCCC----CcccceeEecCCCEEEEEecCC-----CCCCCCceeEEEEeCCCCceEEeeec
Q 039497 461 NLFVLDAVNGEFNGDIRQLTDGP----WIDTMPSWSPKGDLIAFSSNRH-----NPDNVEAFSLYVIKPDGSGLRRIHVA 531 (642)
Q Consensus 461 ~l~~~d~~~g~~~~~~~~l~~~~----~~~~~~~~spdG~~l~~~~~~~-----~~~~~~~~~l~~~d~~~~~~~~l~~~ 531 (642)
.|+.+|+.+.+. ..+.... .......-.-+++.+++..... .........|+++|+.+.+.+.+...
T Consensus 160 ~v~~yd~~~~~W----~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~ 235 (341)
T PLN02153 160 TIEAYNIADGKW----VQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETT 235 (341)
T ss_pred eEEEEECCCCeE----eeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEecccc
Confidence 688999998775 5554321 1111112233565444433211 00001235699999998888877532
Q ss_pred CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc
Q 039497 532 GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT 596 (642)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt 596 (642)
+. .+.. .........+++.++|.........+. .. ......+||.+|+....-+.+.
T Consensus 236 g~---~P~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~--~~-~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 236 GA---KPSA--RSVFAHAVVGKYIIIFGGEVWPDLKGH--LG-PGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred CC---CCCC--cceeeeEEECCEEEEECcccCCccccc--cc-cccccccEEEEEcCccEEEecc
Confidence 11 0001 111222234555455544211000000 00 0001238999999887766664
No 454
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=44.95 E-value=1.1e+02 Score=30.64 Aligned_cols=90 Identities=12% Similarity=0.078 Sum_probs=48.4
Q ss_pred CCEEEEEecCCCCCCCCceeEEEEeCCCCc-eEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCC
Q 039497 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSG-LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP 573 (642)
Q Consensus 495 G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~ 573 (642)
+.+|+.+.... |++++++..+ ......... .......+.-+.+|++.....+.
T Consensus 98 ~~~lv~~~g~~---------l~v~~l~~~~~l~~~~~~~~---------~~~i~sl~~~~~~I~vgD~~~sv-------- 151 (321)
T PF03178_consen 98 NGRLVVAVGNK---------LYVYDLDNSKTLLKKAFYDS---------PFYITSLSVFKNYILVGDAMKSV-------- 151 (321)
T ss_dssp TTEEEEEETTE---------EEEEEEETTSSEEEEEEE-B---------SSSEEEEEEETTEEEEEESSSSE--------
T ss_pred CCEEEEeecCE---------EEEEEccCcccchhhheecc---------eEEEEEEeccccEEEEEEcccCE--------
Confidence 44566666543 8888887777 555443322 22344455556788877765544
Q ss_pred CCCCCCCcEEEEEcCCCceeeccCCC--CCCCCcEEecCCceEEee
Q 039497 574 NQFQPYGDLYVVKLDGSGLRRLTWNG--YENGTPAWHPGNQLDLGK 617 (642)
Q Consensus 574 ~~~~~~~~l~~~~~~~~~~~~lt~~~--~~~~~~~~s~dg~~~~~~ 617 (642)
.++.|+.....+..+.... ....+..|-+|+..++..
T Consensus 152 -------~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 152 -------SLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp -------EEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE
T ss_pred -------EEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE
Confidence 5666676555555555422 223455555454444443
No 455
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=44.18 E-value=3.9e+02 Score=27.76 Aligned_cols=137 Identities=15% Similarity=0.100 Sum_probs=67.0
Q ss_pred eeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccc-eEEccccCCCCccCcEECCCCCeEEEEe
Q 039497 376 FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD-VKILTKEETGNNAFPSCSPDGKFLVFRS 454 (642)
Q Consensus 376 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDg~~l~~~~ 454 (642)
..+..++||+.+++...+. ++.-.. + ++ . .+.+..........+.+.+||..++...
T Consensus 242 ~~v~~~~dG~~~~vg~~G~----------~~~s~d--~-----G~-----~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~ 299 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGN----------FYLTWE--P-----GQ-----PYWQPHNRASARRIQNMGWRADGGLWLLTR 299 (398)
T ss_pred eeEEEcCCCCEEEEECCcc----------EEEecC--C-----CC-----cceEEecCCCccceeeeeEcCCCCEEEEeC
Confidence 3456678888777776431 232222 1 11 2 2333333334566788899988776553
Q ss_pred CCCCceeEEEEECCCCcccc---ceeeCCC--CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc-eEEe
Q 039497 455 GRSGHKNLFVLDAVNGEFNG---DIRQLTD--GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG-LRRI 528 (642)
Q Consensus 455 ~~~g~~~l~~~d~~~g~~~~---~~~~l~~--~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l 528 (642)
. | .|+.-. +.|+. . ....+.. .......+.|.+|+.. +.....+ +.+...++++ .+..
T Consensus 300 ~--G--~l~~S~-d~G~~-~~~~~f~~~~~~~~~~~l~~v~~~~d~~~-~a~G~~G---------~v~~s~D~G~tW~~~ 363 (398)
T PLN00033 300 G--G--GLYVSK-GTGLT-EEDFDFEEADIKSRGFGILDVGYRSKKEA-WAAGGSG---------ILLRSTDGGKSWKRD 363 (398)
T ss_pred C--c--eEEEec-CCCCc-ccccceeecccCCCCcceEEEEEcCCCcE-EEEECCC---------cEEEeCCCCcceeEc
Confidence 2 2 454433 33431 0 0122221 1123566788878764 4444444 3444444444 3443
Q ss_pred ee-cCCCCCCCcccccccceEEcCCCCEEE
Q 039497 529 HV-AGPEGSGDVDRERINHVCFSADGEWLL 557 (642)
Q Consensus 529 ~~-~~~~~~~~~~~~~~~~~~~S~Dg~~l~ 557 (642)
.. ..... ..+.+.|.++++.++
T Consensus 364 ~~~~~~~~-------~ly~v~f~~~~~g~~ 386 (398)
T PLN00033 364 KGADNIAA-------NLYSVKFFDDKKGFV 386 (398)
T ss_pred cccCCCCc-------ceeEEEEcCCCceEE
Confidence 21 22222 456777777665443
No 456
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=44.05 E-value=89 Score=31.54 Aligned_cols=73 Identities=14% Similarity=0.213 Sum_probs=34.4
Q ss_pred CCcEEEEEecCCCCCCCCCCCCeeeEEEEEecC-CCcee-EeecCC--C--cce-E--eeCC--eEEEEEecCCCceEEE
Q 039497 150 SGKFIAVASYESRPWPGEFHELNTDIVVFQESD-PNKRV-IVCERG--G--WPT-W--SGDS--TIYFHRQADDGWWSIF 218 (642)
Q Consensus 150 DG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~-l~~~~~--~--~~~-w--spdg--~~~~~~~~~~g~~~l~ 218 (642)
+|+|+++...+...-..........||++++++ |...+ +....+ + .|. + ..|| ..+|.. +..| +||
T Consensus 158 ~g~w~~i~g~Gy~~~~~~~~~~~~~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~vYaG-Dl~G--nlw 234 (335)
T PF05567_consen 158 NGKWVVIFGSGYNSDDVDSSSGGAALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDRVYAG-DLGG--NLW 234 (335)
T ss_dssp TSSEEEEEE--BS-TT-------EEEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-EEEEE-ETTS--EEE
T ss_pred CCcEEEEEccCCCCCcccccCCCcEEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEEEEEE-cCCC--cEE
Confidence 789988665433211111112457899999998 77443 332221 1 232 2 2455 355555 4556 999
Q ss_pred EEecCCC
Q 039497 219 RVSFPEN 225 (642)
Q Consensus 219 ~~~~~~~ 225 (642)
++++.+.
T Consensus 235 R~dl~~~ 241 (335)
T PF05567_consen 235 RFDLSSA 241 (335)
T ss_dssp EEE--TT
T ss_pred EEECCCC
Confidence 9999764
No 457
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=43.21 E-value=85 Score=20.63 Aligned_cols=29 Identities=14% Similarity=0.321 Sum_probs=19.9
Q ss_pred ccceeEecCCC---EEEEEecCCCCCCCCceeEEEEeCCC
Q 039497 486 DTMPSWSPKGD---LIAFSSNRHNPDNVEAFSLYVIKPDG 522 (642)
Q Consensus 486 ~~~~~~spdG~---~l~~~~~~~~~~~~~~~~l~~~d~~~ 522 (642)
+..+.|||+.. .|+++...+ .+.++|+.+
T Consensus 3 vR~~kFsP~~~~~DLL~~~E~~g--------~vhi~D~R~ 34 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWAEHQG--------RVHIVDTRS 34 (43)
T ss_pred eEEEEeCCCCCcccEEEEEccCC--------eEEEEEccc
Confidence 45678997544 666666554 388999874
No 458
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=43.10 E-value=4.5e+02 Score=29.80 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=18.3
Q ss_pred CcccceeEecCCCEEEEEecCC
Q 039497 484 WIDTMPSWSPKGDLIAFSSNRH 505 (642)
Q Consensus 484 ~~~~~~~~spdG~~l~~~~~~~ 505 (642)
..+..+..+|+|+.|++.+..+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~ 106 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG 106 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc
Confidence 4567789999999999998765
No 459
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=42.45 E-value=1e+02 Score=31.48 Aligned_cols=77 Identities=18% Similarity=0.310 Sum_probs=48.6
Q ss_pred ceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc
Q 039497 512 AFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG 591 (642)
Q Consensus 512 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 591 (642)
.+.||.|++...+.+++...+.. .+|.. ..++.-|.|..++|...- .. |.+.+|+-+.++|++++.+.+
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~P----~pRss-hq~va~~s~~l~~fGGEf-aS-----Pnq~qF~HYkD~W~fd~~trk 165 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNAP----PPRSS-HQAVAVPSNILWLFGGEF-AS-----PNQEQFHHYKDLWLFDLKTRK 165 (521)
T ss_pred eeeeeEEeccccceeEeccCCCc----CCCcc-ceeEEeccCeEEEecccc-CC-----cchhhhhhhhheeeeeeccch
Confidence 34599999998888877653221 12222 233444666444443321 11 245678888899999999988
Q ss_pred eeeccCCC
Q 039497 592 LRRLTWNG 599 (642)
Q Consensus 592 ~~~lt~~~ 599 (642)
-.+|...+
T Consensus 166 weql~~~g 173 (521)
T KOG1230|consen 166 WEQLEFGG 173 (521)
T ss_pred heeeccCC
Confidence 88888654
No 460
>PLN02153 epithiospecifier protein
Probab=42.32 E-value=3.7e+02 Score=27.03 Aligned_cols=66 Identities=9% Similarity=0.139 Sum_probs=35.6
Q ss_pred eeEEEEECCCCccccceeeCCCC---CCc-ccceeEecCCCEEEEEecCCC------CCCCCceeEEEEeCCCCceEEee
Q 039497 460 KNLFVLDAVNGEFNGDIRQLTDG---PWI-DTMPSWSPKGDLIAFSSNRHN------PDNVEAFSLYVIKPDGSGLRRIH 529 (642)
Q Consensus 460 ~~l~~~d~~~g~~~~~~~~l~~~---~~~-~~~~~~spdG~~l~~~~~~~~------~~~~~~~~l~~~d~~~~~~~~l~ 529 (642)
..|+.+|+.+.+. ..+... +.. .......-+++.++|...... ........||.+|+.+...+.+.
T Consensus 217 ~~v~~yd~~~~~W----~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 217 NAVQFFDPASGKW----TEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred CceEEEEcCCCcE----EeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence 4789999998875 554321 111 111223335555555543210 00012347999999888877664
No 461
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=40.38 E-value=1.1e+02 Score=29.84 Aligned_cols=67 Identities=13% Similarity=0.081 Sum_probs=35.3
Q ss_pred ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC--ceEEeeec-----CCCCCCCcccc-cccceEEcCCCCEEE
Q 039497 486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS--GLRRIHVA-----GPEGSGDVDRE-RINHVCFSADGEWLL 557 (642)
Q Consensus 486 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~-----~~~~~~~~~~~-~~~~~~~S~Dg~~l~ 557 (642)
+..+.||++|++|+-..-.. +.+||..-. ....+... .....+++|+- .-..+.||.|.+.++
T Consensus 283 ISD~kFs~ngryIlsRdylt---------vkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~ 353 (460)
T COG5170 283 ISDFKFSDNGRYILSRDYLT---------VKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVL 353 (460)
T ss_pred hcceEEcCCCcEEEEeccce---------EEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccc
Confidence 45679999999887654432 666766433 23322110 00011111111 113567898888877
Q ss_pred EEEe
Q 039497 558 FTAN 561 (642)
Q Consensus 558 ~~~~ 561 (642)
..+-
T Consensus 354 sgsy 357 (460)
T COG5170 354 SGSY 357 (460)
T ss_pred cccc
Confidence 5553
No 462
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=39.56 E-value=2.2e+02 Score=26.59 Aligned_cols=77 Identities=22% Similarity=0.153 Sum_probs=45.9
Q ss_pred EECCCCCeEEEEeCCCCceeEEEEECCCCcccc---ceeeCCC--------CCCcccceeEecCCCEEEEEecCCCCCCC
Q 039497 442 SCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG---DIRQLTD--------GPWIDTMPSWSPKGDLIAFSSNRHNPDNV 510 (642)
Q Consensus 442 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---~~~~l~~--------~~~~~~~~~~spdG~~l~~~~~~~~~~~~ 510 (642)
.+..++++++.... ...+|+||+.+++..- .+..|.. ....+..+..+.+|.-|+..++..
T Consensus 17 ~l~~~~~~Ll~iT~---~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~----- 88 (219)
T PF07569_consen 17 FLECNGSYLLAITS---SGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGD----- 88 (219)
T ss_pred EEEeCCCEEEEEeC---CCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCC-----
Confidence 35567888877764 3489999999877410 0111111 122345567777777766666533
Q ss_pred CceeEEEEeCCCCceEEeee
Q 039497 511 EAFSLYVIKPDGSGLRRIHV 530 (642)
Q Consensus 511 ~~~~l~~~d~~~~~~~~l~~ 530 (642)
.|.|+.+=+...++..
T Consensus 89 ----~y~y~~~L~~W~~vsd 104 (219)
T PF07569_consen 89 ----SYSYSPDLGCWIRVSD 104 (219)
T ss_pred ----EEEeccccceeEEecc
Confidence 6777776666665554
No 463
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=38.89 E-value=14 Score=20.41 Aligned_cols=9 Identities=22% Similarity=0.467 Sum_probs=7.0
Q ss_pred ceeCCCCcE
Q 039497 145 PSVSYSGKF 153 (642)
Q Consensus 145 ~~~SPDG~~ 153 (642)
-.|||||+.
T Consensus 6 t~FSp~Grl 14 (23)
T PF10584_consen 6 TTFSPDGRL 14 (23)
T ss_dssp TSBBTTSSB
T ss_pred eeECCCCeE
Confidence 368999984
No 464
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=38.68 E-value=4.3e+02 Score=29.95 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=44.2
Q ss_pred CCccCcEECCCCCeEEEEeCCCCceeEEEEECC----------CCccccceee--C-----C-CCCCcccceeEecC---
Q 039497 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV----------NGEFNGDIRQ--L-----T-DGPWIDTMPSWSPK--- 494 (642)
Q Consensus 436 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~----------~g~~~~~~~~--l-----~-~~~~~~~~~~~spd--- 494 (642)
..+..+.+||+|+.|+..+.+ .|.++.+- .|+.....+. + . .....+..+.|+|.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~----~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPR----GVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCC----cEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence 456778999999999988643 45555542 1111000000 1 1 12234456789886
Q ss_pred CCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDG 522 (642)
Q Consensus 495 G~~l~~~~~~~~~~~~~~~~l~~~d~~~ 522 (642)
+..|+...+++. |.+||+..
T Consensus 161 ~~~l~vLtsdn~--------lR~y~~~~ 180 (717)
T PF10168_consen 161 DSHLVVLTSDNT--------LRLYDISD 180 (717)
T ss_pred CCeEEEEecCCE--------EEEEecCC
Confidence 477777777654 88888864
No 465
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=38.41 E-value=4.1e+02 Score=26.33 Aligned_cols=85 Identities=13% Similarity=0.212 Sum_probs=48.2
Q ss_pred cCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC-----------CCcccceeEe----cCCCEEEEEec
Q 039497 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-----------PWIDTMPSWS----PKGDLIAFSSN 503 (642)
Q Consensus 439 ~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~-----------~~~~~~~~~s----pdG~~l~~~~~ 503 (642)
.++..-++|.+|+-.. ....|++++.++|+. +-+|... -..-..+.|- +++...+|-..
T Consensus 147 NsV~~~~~G~yLiS~R---~~~~i~~I~~~tG~I---~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 147 NSVDKDDDGDYLISSR---NTSTIYKIDPSTGKI---IWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred eeeeecCCccEEEEec---ccCEEEEEECCCCcE---EEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 3455567888776544 334899999988986 4455332 0112345666 56665566552
Q ss_pred CC--CCCCCCceeEEEEeCCCCceEEee
Q 039497 504 RH--NPDNVEAFSLYVIKPDGSGLRRIH 529 (642)
Q Consensus 504 ~~--~~~~~~~~~l~~~d~~~~~~~~l~ 529 (642)
.. .........++.+|..+...+.+.
T Consensus 221 ~~~~~~~~~s~~~v~~ld~~~~~~~~~~ 248 (299)
T PF14269_consen 221 NSDFNGTEPSRGLVLELDPETMTVTLVR 248 (299)
T ss_pred CCCCCCCcCCCceEEEEECCCCEEEEEE
Confidence 11 111235566777887765555444
No 466
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=37.43 E-value=5.1e+02 Score=28.70 Aligned_cols=107 Identities=14% Similarity=0.115 Sum_probs=56.1
Q ss_pred EEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeee--ecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCC
Q 039497 343 LIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSW--SPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDD 417 (642)
Q Consensus 343 ~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~--spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 417 (642)
+++.+. .....+-++|..++....-.. .+.+.++.| .|||+.++.+.. ...+.+|.--. .+ +.
T Consensus 42 k~a~V~--~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf-------~~~v~l~~Q~R-~d--y~ 109 (631)
T PF12234_consen 42 KIAVVD--SSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGF-------PHHVLLYTQLR-YD--YT 109 (631)
T ss_pred cEEEEE--CCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEc-------CcEEEEEEccc-hh--hh
Confidence 456554 345688888988776332211 556777766 578998888775 34444443210 00 00
Q ss_pred CCCCccccceEEc--cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEEC
Q 039497 418 NNREEIPCDVKIL--TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA 467 (642)
Q Consensus 418 ~~~~~~~~~~~~l--~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~ 467 (642)
+.+..-. ..+.+ .......+....|.+||..++.+.+ ++++++-
T Consensus 110 ~~~p~w~-~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN-----qlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWA-PIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN-----QLFVFDK 155 (631)
T ss_pred cCCcccc-eeEEEEeecCCCCCccceeEecCCeEEEEeCC-----EEEEECC
Confidence 0110000 11111 1111134667899999966654442 6777763
No 467
>PRK13684 Ycf48-like protein; Provisional
Probab=37.23 E-value=4.5e+02 Score=26.48 Aligned_cols=77 Identities=21% Similarity=0.317 Sum_probs=39.0
Q ss_pred eEEEEECCCCccccceeeCCCC-CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC-ceEEeeecCCCCCCC
Q 039497 461 NLFVLDAVNGEFNGDIRQLTDG-PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS-GLRRIHVAGPEGSGD 538 (642)
Q Consensus 461 ~l~~~d~~~g~~~~~~~~l~~~-~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~ 538 (642)
.||+-+ +.|+. -+.+... ......+.+.|+|.++++.. .+. ++.-.-+++ ..+.+.. ....
T Consensus 153 ~i~~S~-DgG~t---W~~~~~~~~g~~~~i~~~~~g~~v~~g~-~G~--------i~~s~~~gg~tW~~~~~-~~~~--- 215 (334)
T PRK13684 153 AIYRTT-DGGKN---WEALVEDAAGVVRNLRRSPDGKYVAVSS-RGN--------FYSTWEPGQTAWTPHQR-NSSR--- 215 (334)
T ss_pred eEEEEC-CCCCC---ceeCcCCCcceEEEEEECCCCeEEEEeC-Cce--------EEEEcCCCCCeEEEeeC-CCcc---
Confidence 455543 33443 2444332 23455678889886554443 332 554322333 3444432 2222
Q ss_pred cccccccceEEcCCCCEEEE
Q 039497 539 VDRERINHVCFSADGEWLLF 558 (642)
Q Consensus 539 ~~~~~~~~~~~S~Dg~~l~~ 558 (642)
....+.+.++++.+++
T Consensus 216 ----~l~~i~~~~~g~~~~v 231 (334)
T PRK13684 216 ----RLQSMGFQPDGNLWML 231 (334)
T ss_pred ----cceeeeEcCCCCEEEE
Confidence 4567888888875544
No 468
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=36.77 E-value=5e+02 Score=29.81 Aligned_cols=99 Identities=12% Similarity=0.067 Sum_probs=53.6
Q ss_pred CccCcEECCCC-CeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC----------cccceeEecCCCEEEEEecCC
Q 039497 437 NNAFPSCSPDG-KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW----------IDTMPSWSPKGDLIAFSSNRH 505 (642)
Q Consensus 437 ~~~~~~~SpDg-~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~----------~~~~~~~spdG~~l~~~~~~~ 505 (642)
...+++|.|.. +.|+... ..|.+.||.+..................+ ....+.|.++-+.|++.....
T Consensus 147 ~~aDv~FnP~~~~q~AiVD-~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~ 225 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVD-EKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK 225 (765)
T ss_pred ccceEEeccCccceEEEEe-ccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc
Confidence 45568888844 4566554 44777777761110110000111111111 123567988888888777655
Q ss_pred CCCCCCceeEEEEeCCCCceEE-eeecCCCCCCCcccccccceEEcCC
Q 039497 506 NPDNVEAFSLYVIKPDGSGLRR-IHVAGPEGSGDVDRERINHVCFSAD 552 (642)
Q Consensus 506 ~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~S~D 552 (642)
|.++|+++..... +....... .+.++.=+++
T Consensus 226 ---------l~~~d~~~~~~~~~l~~~~~~~-------~IlDv~~~~~ 257 (765)
T PF10214_consen 226 ---------LMLIDFESNWQTEYLVTAKTWS-------WILDVKRSPD 257 (765)
T ss_pred ---------eEEEECCCCCccchhccCCChh-------heeeEEecCC
Confidence 9999999876644 33322222 4556666666
No 469
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=36.24 E-value=6e+02 Score=27.62 Aligned_cols=38 Identities=26% Similarity=0.453 Sum_probs=25.1
Q ss_pred eeEecCCCEEEEEecCCCCC--------CCCceeEEEEeCCCCceE
Q 039497 489 PSWSPKGDLIAFSSNRHNPD--------NVEAFSLYVIKPDGSGLR 526 (642)
Q Consensus 489 ~~~spdG~~l~~~~~~~~~~--------~~~~~~l~~~d~~~~~~~ 526 (642)
+++.|+-..||+...+..+. +.....|+-+|+++|+.+
T Consensus 239 ~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~ 284 (527)
T TIGR03075 239 GSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIK 284 (527)
T ss_pred eeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEE
Confidence 37777777777776542220 112458999999999876
No 470
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=35.12 E-value=6.1e+02 Score=27.44 Aligned_cols=124 Identities=13% Similarity=0.095 Sum_probs=63.5
Q ss_pred ceeEecCCCEEEEEecCCCCC---------CCCceeEEEEeCCCC-------ceEEeeecCCCCC------C---Ccccc
Q 039497 488 MPSWSPKGDLIAFSSNRHNPD---------NVEAFSLYVIKPDGS-------GLRRIHVAGPEGS------G---DVDRE 542 (642)
Q Consensus 488 ~~~~spdG~~l~~~~~~~~~~---------~~~~~~l~~~d~~~~-------~~~~l~~~~~~~~------~---~~~~~ 542 (642)
.+.+.|.-..+||.-.++.+. ....-+|++|-..++ ++..+...+.... . ..+..
T Consensus 421 ~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~~~~f~ 500 (616)
T COG3211 421 WIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANINANWFN 500 (616)
T ss_pred ceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCccccccc
Confidence 346677766777776655421 234567888876654 3333332211100 0 01111
Q ss_pred cccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC---Cceee-ccCC-CCCCCCcEEecCCceE-Ee
Q 039497 543 RINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG---SGLRR-LTWN-GYENGTPAWHPGNQLD-LG 616 (642)
Q Consensus 543 ~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~-lt~~-~~~~~~~~~s~dg~~~-~~ 616 (642)
.+..+.|.|.|+..+.+..... +..++..-++.+...+ +++++ ++.. +..+..+.||||++-+ |+
T Consensus 501 ~PDnl~fD~~GrLWi~TDg~~s---------~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~ 571 (616)
T COG3211 501 SPDNLAFDPWGRLWIQTDGSGS---------TLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVN 571 (616)
T ss_pred CCCceEECCCCCEEEEecCCCC---------ccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEE
Confidence 3567889999986655543321 1111222444443332 33443 3332 3467899999999655 55
Q ss_pred ecCC
Q 039497 617 KLRL 620 (642)
Q Consensus 617 ~~~~ 620 (642)
-+.=
T Consensus 572 vQHP 575 (616)
T COG3211 572 VQHP 575 (616)
T ss_pred ecCC
Confidence 5443
No 471
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.42 E-value=7.5e+02 Score=28.21 Aligned_cols=148 Identities=16% Similarity=0.151 Sum_probs=79.8
Q ss_pred ceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEe
Q 039497 375 AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRS 454 (642)
Q Consensus 375 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~ 454 (642)
+..++.|.|-+.++..-. ++.+.++.-+. ..+.+- +......+. ..++.+++--|++.++|..
T Consensus 128 ~s~l~Vs~~l~~Iv~Gf~-------nG~V~~~~GDi----~RDrgs-----r~~~~~~~~-~pITgL~~~~d~~s~lFv~ 190 (933)
T KOG2114|consen 128 ASSLAVSEDLKTIVCGFT-------NGLVICYKGDI----LRDRGS-----RQDYSHRGK-EPITGLALRSDGKSVLFVA 190 (933)
T ss_pred ceEEEEEccccEEEEEec-------CcEEEEEcCcc----hhcccc-----ceeeeccCC-CCceeeEEecCCceeEEEE
Confidence 456677777666655432 44444444332 111111 333333444 6788899999999977766
Q ss_pred CCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec-CC
Q 039497 455 GRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GP 533 (642)
Q Consensus 455 ~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~~ 533 (642)
. ..+|..+.+. |+.+ ..+.+..+......-++++--..+.++.... |+.|+.++.+.. .+.. +.
T Consensus 191 T---t~~V~~y~l~-gr~p-~~~~ld~~G~~lnCss~~~~t~qfIca~~e~---------l~fY~sd~~~~c-faf~~g~ 255 (933)
T KOG2114|consen 191 T---TEQVMLYSLS-GRTP-SLKVLDNNGISLNCSSFSDGTYQFICAGSEF---------LYFYDSDGRGPC-FAFEVGE 255 (933)
T ss_pred e---cceeEEEEec-CCCc-ceeeeccCCccceeeecCCCCccEEEecCce---------EEEEcCCCccee-eeecCCC
Confidence 3 2356666665 3310 0233555444444456664444377776654 999998765443 3322 21
Q ss_pred CCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497 534 EGSGDVDRERINHVCFSADGEWLLFTANLGA 564 (642)
Q Consensus 534 ~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~ 564 (642)
. .-+.|..-|..|+++...+.
T Consensus 256 k----------k~~~~~~~g~~L~v~~~~~~ 276 (933)
T KOG2114|consen 256 K----------KEMLVFSFGLLLCVTTDKGT 276 (933)
T ss_pred e----------EEEEEEecCEEEEEEccCCC
Confidence 1 23455555766666655543
No 472
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=32.16 E-value=96 Score=29.49 Aligned_cols=73 Identities=15% Similarity=0.073 Sum_probs=45.8
Q ss_pred ccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEec-CCCEEEEEecCCCCCCCCceeEE
Q 039497 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP-KGDLIAFSSNRHNPDNVEAFSLY 516 (642)
Q Consensus 438 ~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~l~ 516 (642)
+..+.-.|.-+.++.....+|. +-+||......+ .-.+..+....+.+-|+| ++..|+..+.++. ||
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~--~~l~d~rn~~~p--~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs--------lw 249 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGI--VGLWDARNVAMP--VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS--------LW 249 (319)
T ss_pred chhhhCCcccccEEEEecCCCe--EEEEEcccccch--HHHHHHhhhhhhheeccCCCchheeEecCCCc--------EE
Confidence 4455667777788877766664 445555443320 223334555667788988 5566766666654 99
Q ss_pred EEeCCC
Q 039497 517 VIKPDG 522 (642)
Q Consensus 517 ~~d~~~ 522 (642)
.||..+
T Consensus 250 ~wdas~ 255 (319)
T KOG4714|consen 250 HWDAST 255 (319)
T ss_pred EEcCCC
Confidence 999876
No 473
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=31.79 E-value=4.2e+02 Score=24.57 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=27.5
Q ss_pred EEEEeCCCCceEEeeecC-CCCCCCcc---cccccceEEcCCCCEEEEEEec
Q 039497 515 LYVIKPDGSGLRRIHVAG-PEGSGDVD---RERINHVCFSADGEWLLFTANL 562 (642)
Q Consensus 515 l~~~d~~~~~~~~l~~~~-~~~~~~~~---~~~~~~~~~S~Dg~~l~~~~~~ 562 (642)
|.+++.++|+........ ....-+.+ -...+.+++.|++.+++.+...
T Consensus 198 I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~ 249 (262)
T COG3823 198 IARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL 249 (262)
T ss_pred eEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc
Confidence 888888888776554321 00000000 0024568889999888887643
No 474
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=31.75 E-value=1.7e+02 Score=36.27 Aligned_cols=116 Identities=11% Similarity=0.052 Sum_probs=63.3
Q ss_pred CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC--CCCccCcEECCCCCeE
Q 039497 373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE--TGNNAFPSCSPDGKFL 450 (642)
Q Consensus 373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~SpDg~~l 450 (642)
..+....|+.+|++..++. .++.+.+|.+.. . .++... ......+.|-- .-+
T Consensus 2252 s~vtr~~f~~qGnk~~i~d-------~dg~l~l~q~~p--k---------------~~~s~qchnk~~~Df~Fi~--s~~ 2305 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVD-------GDGDLSLWQASP--K---------------PYTSWQCHNKALSDFRFIG--SLL 2305 (2439)
T ss_pred chhhhhhhcccCCceeeec-------cCCceeecccCC--c---------------ceeccccCCccccceeeee--hhh
Confidence 3455678888898887775 377888888753 1 111110 02223344432 222
Q ss_pred EEEeCCCCceeEEEEECC--CCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE
Q 039497 451 VFRSGRSGHKNLFVLDAV--NGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526 (642)
Q Consensus 451 ~~~~~~~g~~~l~~~d~~--~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 526 (642)
+.+........+-+||.- ++.. ... +.+.+..+.+++.|.-..|+-.+.++ ++++||+...+++
T Consensus 2306 ~tag~s~d~~n~~lwDtl~~~~~s---~v~-~~H~~gaT~l~~~P~~qllisggr~G--------~v~l~D~rqrql~ 2371 (2439)
T KOG1064|consen 2306 ATAGRSSDNRNVCLWDTLLPPMNS---LVH-TCHDGGATVLAYAPKHQLLISGGRKG--------EVCLFDIRQRQLR 2371 (2439)
T ss_pred hccccCCCCCcccchhcccCcccc---eee-eecCCCceEEEEcCcceEEEecCCcC--------cEEEeehHHHHHH
Confidence 222222223356666643 2322 122 55666778889999876555444444 3999999655443
No 475
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=31.47 E-value=5.1e+02 Score=25.37 Aligned_cols=74 Identities=11% Similarity=0.050 Sum_probs=38.9
Q ss_pred ccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEE
Q 039497 438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYV 517 (642)
Q Consensus 438 ~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~ 517 (642)
...+.|++-|..++. +..+| ++..++...... ..++....+....+...|+-...-|+|++.+.. .|.-
T Consensus 124 ~lslD~~~~~~~i~v-s~s~G--~~~~v~~t~~~l-e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~-------~l~~ 192 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFV-SDSRG--SISGVYETEMVL-EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDG-------SLSC 192 (339)
T ss_pred eeEEEeeccCceEEE-EcCCC--cEEEEecceeee-eecccccccceeeeeeecccCCCceEEecCCCc-------eEEE
Confidence 345678888888654 44334 344444433332 001123334444455566554445777766553 3888
Q ss_pred EeCCC
Q 039497 518 IKPDG 522 (642)
Q Consensus 518 ~d~~~ 522 (642)
||+.-
T Consensus 193 ~D~R~ 197 (339)
T KOG0280|consen 193 WDIRI 197 (339)
T ss_pred EEecC
Confidence 88873
No 476
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=30.74 E-value=1.5e+02 Score=30.23 Aligned_cols=35 Identities=20% Similarity=0.110 Sum_probs=26.9
Q ss_pred CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcc
Q 039497 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF 472 (642)
Q Consensus 436 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~ 472 (642)
+.++.+-+|-|.|+|++.....| .|+.+|+++-+.
T Consensus 312 ~LITDilISmDDRFLYvs~WLHG--DirQYdIsDP~n 346 (476)
T KOG0918|consen 312 GLITDILISLDDRFLYVSNWLHG--DIRQYDISDPKN 346 (476)
T ss_pred hhhheeEEeecCcEEEEEeeeec--ceeeeccCCCCC
Confidence 56778889999999998876555 677888776543
No 477
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.47 E-value=8.2e+02 Score=27.49 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=36.0
Q ss_pred CceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497 352 LNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVS 409 (642)
Q Consensus 352 ~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~ 409 (642)
....|++++..|-....+.. .+.+-.+.||.+...|.+.. ++.+++|.+-
T Consensus 62 a~~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k--------~g~v~Vy~~~ 112 (829)
T KOG2280|consen 62 ARPYIRIFNISGQLLGRILWKHGELIGMGWSDDEELICVQK--------DGTVHVYGLL 112 (829)
T ss_pred cceeEEEEeccccchHHHHhcCCCeeeecccCCceEEEEec--------cceEEEeecc
Confidence 34679999988866555554 45777889998877665554 6788888774
No 478
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=30.00 E-value=5.3e+02 Score=25.88 Aligned_cols=159 Identities=13% Similarity=0.077 Sum_probs=0.0
Q ss_pred CCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCC------CeeEEeecCCceeeeee
Q 039497 308 GQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGS------KRWTLIKDRTAFYNSWS 381 (642)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~------~~~~l~~~~~~~~~~~s 381 (642)
+......+..+.....+.-....+.-...|.-.+. |+|.. -....|+.+|+... ....+..+..+.++..-
T Consensus 231 G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~n-Lv~~G--cRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~L 307 (425)
T KOG2695|consen 231 GLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDN-LVFNG--CRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQIL 307 (425)
T ss_pred cccceeEEEEeecccccccccchhHHHHHhcccCC-eeEec--ccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhh
Q ss_pred c-CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccc---eEEccccCCCCccCcEECCCCCeEEEEeCCC
Q 039497 382 P-TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD---VKILTKEETGNNAFPSCSPDGKFLVFRSGRS 457 (642)
Q Consensus 382 p-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~ 457 (642)
. ++.+|....- .+++.+|++.. .+ . ++....+-......+.--.....++++..++
T Consensus 308 q~s~q~LmaS~M-------~gkikLyD~R~--------~K-----~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD 367 (425)
T KOG2695|consen 308 QFSQQKLMASDM-------TGKIKLYDLRA--------TK-----CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD 367 (425)
T ss_pred ccccceEeeccC-------cCceeEeeehh--------hh-----cccceeeeecccccccccccccccccceEEEccCe
Q ss_pred CceeEEEEECCCCccccceeeCCCCCCcccceeEecC
Q 039497 458 GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK 494 (642)
Q Consensus 458 g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spd 494 (642)
-..+||.++ .|.. +..+.........-.||-+
T Consensus 368 cytRiWsl~--~ghL---l~tipf~~s~~e~d~~sv~ 399 (425)
T KOG2695|consen 368 CYTRIWSLD--SGHL---LCTIPFPYSASEVDIPSVA 399 (425)
T ss_pred eEEEEEecc--cCce---eeccCCCCcccccccccee
No 479
>smart00284 OLF Olfactomedin-like domains.
Probab=29.98 E-value=5.1e+02 Score=24.92 Aligned_cols=143 Identities=15% Similarity=0.060 Sum_probs=70.8
Q ss_pred EEEEecCCCceeEEEEECCCCCee--EEeec-----------CCceeeeeecC--CCEEEEEEcCCCcccCCCeEEEEEE
Q 039497 344 IVFNHDFELNAGIKIAKSDGSKRW--TLIKD-----------RTAFYNSWSPT--EKHVIYTSTGPIFQSERATVQIARV 408 (642)
Q Consensus 344 l~~~~~~~~~~~l~~~d~~~~~~~--~l~~~-----------~~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~l~~~ 408 (642)
+.|.. .+...|..+|+.+.... ++... +....+.+.-| |=+++|.+. ...+.+.|-.+
T Consensus 86 lYY~~--~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~-----~~~g~ivvSkL 158 (255)
T smart00284 86 LYFNK--FNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATE-----QNAGKIVISKL 158 (255)
T ss_pred EEEEe--cCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEecc-----CCCCCEEEEee
Confidence 55544 33578999999888753 22221 12223444444 445556553 23455666666
Q ss_pred EeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCcee-EEEEECCCCccccceeeCCCCCCccc
Q 039497 409 SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKN-LFVLDAVNGEFNGDIRQLTDGPWIDT 487 (642)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~-l~~~d~~~g~~~~~~~~l~~~~~~~~ 487 (642)
+. . ..++ ...--+.-. .....-+|--+|..-+..+......+ -|.+|+.+++.......+........
T Consensus 159 np--~------tL~v--e~tW~T~~~-k~sa~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s 227 (255)
T smart00284 159 NP--A------TLTI--ENTWITTYN-KRSASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYIS 227 (255)
T ss_pred Cc--c------cceE--EEEEEcCCC-cccccccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeeeeccccccce
Confidence 54 1 1111 001111111 22233456667743333322222333 47899988764111122233444566
Q ss_pred ceeEecCCCEEEEEecC
Q 039497 488 MPSWSPKGDLIAFSSNR 504 (642)
Q Consensus 488 ~~~~spdG~~l~~~~~~ 504 (642)
.+.+.|-.+.|+...+.
T Consensus 228 ~l~YNP~d~~LY~wdng 244 (255)
T smart00284 228 MLDYNPNDRKLYAWNNG 244 (255)
T ss_pred eceeCCCCCeEEEEeCC
Confidence 77899988877766554
No 480
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=28.78 E-value=9.6e+02 Score=27.72 Aligned_cols=78 Identities=8% Similarity=-0.024 Sum_probs=50.3
Q ss_pred eeEEEEEecCCCceeEeecCC-CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceee
Q 039497 173 TDIVVFQESDPNKRVIVCERG-GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAF 251 (642)
Q Consensus 173 ~~l~~~~~~~g~~~~l~~~~~-~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 251 (642)
..|..+|+.+.++.+...-.. +....--+++.+|++ +..| .|...|+.+-+ ....+..+...+. +|+
T Consensus 157 ~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G-~t~G--~V~LrD~~s~~-------~iht~~aHs~siS--DfD 224 (1118)
T KOG1275|consen 157 EKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCG-DTRG--TVFLRDPNSFE-------TIHTFDAHSGSIS--DFD 224 (1118)
T ss_pred hheeeeecccceeeeeeeccCCceEEEEecCcEEEee-cccc--eEEeecCCcCc-------eeeeeecccccee--eee
Confidence 357788899988888877444 433445667889888 4556 77777777653 3444444443333 344
Q ss_pred cCCcEEEEEEe
Q 039497 252 HDGKRLAVATR 262 (642)
Q Consensus 252 pdG~~l~~~~~ 262 (642)
-.|..|+.+.-
T Consensus 225 v~GNlLitCG~ 235 (1118)
T KOG1275|consen 225 VQGNLLITCGY 235 (1118)
T ss_pred ccCCeEEEeec
Confidence 56887887653
No 481
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=27.15 E-value=1.4e+02 Score=28.53 Aligned_cols=73 Identities=15% Similarity=0.142 Sum_probs=48.5
Q ss_pred ceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECC-CCCeEEEE
Q 039497 375 AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP-DGKFLVFR 453 (642)
Q Consensus 375 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-Dg~~l~~~ 453 (642)
+....-.|..+.++.+. .+++.+.+|+.... .. ....+..++ ..+..+.|+| ++..|+..
T Consensus 182 v~~l~~hp~qq~~v~cg------t~dg~~~l~d~rn~-------~~-----p~S~l~ahk-~~i~eV~FHpk~p~~Lft~ 242 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCG------TDDGIVGLWDARNV-------AM-----PVSLLKAHK-AEIWEVHFHPKNPEHLFTC 242 (319)
T ss_pred chhhhCCcccccEEEEe------cCCCeEEEEEcccc-------cc-----hHHHHHHhh-hhhhheeccCCCchheeEe
Confidence 55666678777888777 45788889998651 11 334444444 5677788988 45666555
Q ss_pred eCCCCceeEEEEECCC
Q 039497 454 SGRSGHKNLFVLDAVN 469 (642)
Q Consensus 454 ~~~~g~~~l~~~d~~~ 469 (642)
++ + ..||.||..+
T Consensus 243 se-d--Gslw~wdas~ 255 (319)
T KOG4714|consen 243 SE-D--GSLWHWDAST 255 (319)
T ss_pred cC-C--CcEEEEcCCC
Confidence 53 3 3899999874
No 482
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=27.11 E-value=1.2e+02 Score=31.22 Aligned_cols=89 Identities=17% Similarity=0.132 Sum_probs=57.7
Q ss_pred CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCC-------CC-----C-------------
Q 039497 484 WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEG-------SG-----D------------- 538 (642)
Q Consensus 484 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~-------~~-----~------------- 538 (642)
....++.|||+|..|.-.+.+. .|+..++.++++.+...+.... .+ +
T Consensus 202 t~pts~Efsp~g~qistl~~Dr--------kVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek 273 (558)
T KOG0882|consen 202 TEPTSFEFSPDGAQISTLNPDR--------KVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEK 273 (558)
T ss_pred cCccceEEccccCcccccCccc--------EEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhh
Confidence 4456789999999988777543 3888888888765544321100 00 0
Q ss_pred cccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCC
Q 039497 539 VDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN 598 (642)
Q Consensus 539 ~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~ 598 (642)
.+.-....+.|...|++|+|..-- .|-+++++++...++...
T Consensus 274 ~~~~~~~~~~fdes~~flly~t~~------------------gikvin~~tn~v~ri~gk 315 (558)
T KOG0882|consen 274 HGSTVGTNAVFDESGNFLLYGTIL------------------GIKVINLDTNTVVRILGK 315 (558)
T ss_pred hcCcccceeEEcCCCCEEEeecce------------------eEEEEEeecCeEEEEecc
Confidence 000123467899999999987744 577888888877776654
No 483
>PHA02790 Kelch-like protein; Provisional
Probab=26.91 E-value=8e+02 Score=26.20 Aligned_cols=142 Identities=4% Similarity=-0.125 Sum_probs=66.5
Q ss_pred eeEEEEECCCCCeeEEee-c-CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497 354 AGIKIAKSDGSKRWTLIK-D-RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT 431 (642)
Q Consensus 354 ~~l~~~d~~~~~~~~l~~-~-~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 431 (642)
..++.+|...+....+.. . .........-+ ..|+.+... .....+..|+... + ....+.
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~-~~iYviGG~----~~~~sve~ydp~~--n------------~W~~~~ 347 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSPRLYASGVPAN-NKLYVVGGL----PNPTSVERWFHGD--A------------AWVNMP 347 (480)
T ss_pred CeEEEEECCCCEEEECCCCCchhhcceEEEEC-CEEEEECCc----CCCCceEEEECCC--C------------eEEECC
Confidence 468888988876655544 1 11111122234 456555421 1112344443322 1 344444
Q ss_pred ccCCCCccCcEECCCCCeEEEEeCCCC-ceeEEEEECCCCccccceeeCCCCCCcccc-eeEecCCCEEEEEecCCCCCC
Q 039497 432 KEETGNNAFPSCSPDGKFLVFRSGRSG-HKNLFVLDAVNGEFNGDIRQLTDGPWIDTM-PSWSPKGDLIAFSSNRHNPDN 509 (642)
Q Consensus 432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g-~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~-~~~spdG~~l~~~~~~~~~~~ 509 (642)
.-...........-+| .|+......+ ...+..+|+.+.+. ..+...+..... ....-+| .|+..+..
T Consensus 348 ~l~~~r~~~~~~~~~g-~IYviGG~~~~~~~ve~ydp~~~~W----~~~~~m~~~r~~~~~~~~~~-~IYv~GG~----- 416 (480)
T PHA02790 348 SLLKPRCNPAVASINN-VIYVIGGHSETDTTTEYLLPNHDQW----QFGPSTYYPHYKSCALVFGR-RLFLVGRN----- 416 (480)
T ss_pred CCCCCCcccEEEEECC-EEEEecCcCCCCccEEEEeCCCCEE----EeCCCCCCccccceEEEECC-EEEEECCc-----
Confidence 3321122222333355 4554443222 23567789888775 555443322111 2223345 45555421
Q ss_pred CCceeEEEEeCCCCceEEeee
Q 039497 510 VEAFSLYVIKPDGSGLRRIHV 530 (642)
Q Consensus 510 ~~~~~l~~~d~~~~~~~~l~~ 530 (642)
..++|.++++.+.+..
T Consensus 417 -----~e~ydp~~~~W~~~~~ 432 (480)
T PHA02790 417 -----AEFYCESSNTWTLIDD 432 (480)
T ss_pred -----eEEecCCCCcEeEcCC
Confidence 4567888888776654
No 484
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=26.76 E-value=50 Score=25.61 Aligned_cols=23 Identities=4% Similarity=0.179 Sum_probs=16.8
Q ss_pred CCceeeeeceecCCCCCeEEEEEc
Q 039497 41 DGTSINFNAQFVDGQDQTIAFISE 64 (642)
Q Consensus 41 ~~~~~~~~~~~S~pDG~~laf~~~ 64 (642)
.-.+....-.|| |||+.|+|-++
T Consensus 10 qi~Gv~AAGefs-~DGkLv~Ykgd 32 (109)
T COG4831 10 QIKGVMAAGEFS-PDGKLVEYKGD 32 (109)
T ss_pred CccceeEeceeC-CCCceEEeeCC
Confidence 344455567799 99999999653
No 485
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=25.84 E-value=5.3e+02 Score=25.24 Aligned_cols=105 Identities=11% Similarity=0.082 Sum_probs=58.8
Q ss_pred eeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce
Q 039497 513 FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL 592 (642)
Q Consensus 513 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 592 (642)
..|++||.++.+...+-. +..+ .+.++.|..+.+.++...-.-.. .....+..||.+....
T Consensus 16 ~~lC~yd~~~~qW~~~g~-~i~G-------~V~~l~~~~~~~Llv~G~ft~~~-----------~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGN-GISG-------TVTDLQWASNNQLLVGGNFTLNG-----------TNSSNLATYDFKNQTW 76 (281)
T ss_pred CEEEEEECCCCEeecCCC-CceE-------EEEEEEEecCCEEEEEEeeEECC-----------CCceeEEEEecCCCee
Confidence 459999998888776654 3555 68899998554444433211100 0123788888888766
Q ss_pred eeccCCC-----CCCCCcEEe-cCC-ceEEeecCCCcccccceeeeecccceec
Q 039497 593 RRLTWNG-----YENGTPAWH-PGN-QLDLGKLRLEDDIGDKLRGQFDEPLWIS 639 (642)
Q Consensus 593 ~~lt~~~-----~~~~~~~~s-~dg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (642)
..+.... +.+....+. .|+ +.+++... . .+......||...|-+
T Consensus 77 ~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~-~--~g~~~l~~~dGs~W~~ 127 (281)
T PF12768_consen 77 SSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS-A--NGSTFLMKYDGSSWSS 127 (281)
T ss_pred eecCCcccccCCCcEEEEEeeccCCceEEEecee-c--CCCceEEEEcCCceEe
Confidence 5555521 222223332 244 55566554 2 2333556677777743
No 486
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.83 E-value=1.4e+02 Score=34.46 Aligned_cols=94 Identities=19% Similarity=0.168 Sum_probs=58.7
Q ss_pred CCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-CCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCC
Q 039497 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP 573 (642)
Q Consensus 495 G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~ 573 (642)
+-.|++.++.+. +...|+.+. ..++.... ..+ ++..++|+.||+.+...-.+|
T Consensus 99 ~~~ivi~Ts~gh--------vl~~d~~~n-L~~~~~ne~v~~-------~Vtsvafn~dg~~l~~G~~~G---------- 152 (1206)
T KOG2079|consen 99 VVPIVIGTSHGH--------VLLSDMTGN-LGPLHQNERVQG-------PVTSVAFNQDGSLLLAGLGDG---------- 152 (1206)
T ss_pred eeeEEEEcCchh--------hhhhhhhcc-cchhhcCCccCC-------cceeeEecCCCceeccccCCC----------
Confidence 445666665543 666676543 33333322 223 678999999999887666543
Q ss_pred CCCCCCCcEEEEEcCCCc-eeeccCCCCCC---CCcEEecCCceEEeecCCC
Q 039497 574 NQFQPYGDLYVVKLDGSG-LRRLTWNGYEN---GTPAWHPGNQLDLGKLRLE 621 (642)
Q Consensus 574 ~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~---~~~~~s~dg~~~~~~~~~~ 621 (642)
.|..||...+. .+.++.++... ....|..++-.+++..+.|
T Consensus 153 -------~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~G 197 (1206)
T KOG2079|consen 153 -------HVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGG 197 (1206)
T ss_pred -------cEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCC
Confidence 78999988754 56666554333 3445556666677777766
No 487
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=24.71 E-value=6.4e+02 Score=26.95 Aligned_cols=59 Identities=8% Similarity=0.005 Sum_probs=32.9
Q ss_pred EecCCCceeEEEEECCCCCeeEEeecCCceeeeeec-CCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497 347 NHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIARVSF 410 (642)
Q Consensus 347 ~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~ 410 (642)
+...+..+.|+++|.+++....-..-..+..-.|-+ .+..+++... .+...+.|+.++.
T Consensus 368 ~d~~~~ls~LvllD~~tg~~l~~S~~~~Ir~r~~~~~~~~~vaI~g~-----~G~~~ikLvlid~ 427 (489)
T PF05262_consen 368 LDPNHYLSELVLLDSDTGDTLKRSPVNGIRGRTFYEREDDLVAIAGC-----SGNAAIKLVLIDP 427 (489)
T ss_pred ecCCCcceeEEEEeCCCCceecccccceeccceeEEcCCCEEEEecc-----CCchheEEEecCc
Confidence 333344578999999998654433322233322323 3445554432 3567788888766
No 488
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=24.51 E-value=1.2e+03 Score=27.53 Aligned_cols=191 Identities=14% Similarity=0.071 Sum_probs=95.8
Q ss_pred EEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeec---CCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497 336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSP---TEKHVIYTSTGPIFQSERATVQIARVSFQ 411 (642)
Q Consensus 336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~sp---dg~~l~~~~~~~~~~~~~~~~~l~~~~~~ 411 (642)
.|.....+|+..+ +...|.++|++......-.. ......-+.|+ .|+.|+..- .++.+++|+...
T Consensus 1172 dWqQ~~G~Ll~tG---d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGf-------aDGsvRvyD~R~- 1240 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTG---DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGF-------ADGSVRVYDRRM- 1240 (1387)
T ss_pred ehhhhCCeEEecC---CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEee-------cCCceEEeeccc-
Confidence 4544434444422 24567778877655443333 22212222333 356565543 378999999876
Q ss_pred cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCe-EEEEeCCCCceeEEEEECCCCccccceeeCCCCC----C-c
Q 039497 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF-LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP----W-I 485 (642)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~-l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~----~-~ 485 (642)
.. ...+....+.-... ..+-++.+-+.|-. |+-.+ .+| .|+++|+..... ...++... + .
T Consensus 1241 -a~-----~ds~v~~~R~h~~~--~~Iv~~slq~~G~~elvSgs-~~G--~I~~~DlR~~~~---e~~~~iv~~~~yGs~ 1306 (1387)
T KOG1517|consen 1241 -AP-----PDSLVCVYREHNDV--EPIVHLSLQRQGLGELVSGS-QDG--DIQLLDLRMSSK---ETFLTIVAHWEYGSA 1306 (1387)
T ss_pred -CC-----ccccceeecccCCc--ccceeEEeecCCCcceeeec-cCC--eEEEEecccCcc---cccceeeeccccCcc
Confidence 21 10000011111111 12556677766544 44443 334 788899875322 12222111 2 2
Q ss_pred ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497 486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL 562 (642)
Q Consensus 486 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~ 562 (642)
.+....+++...|+..+.. .|.+|++.+.++..+...... ....-..+..++|.|---.|+..+.+
T Consensus 1307 lTal~VH~hapiiAsGs~q---------~ikIy~~~G~~l~~~k~n~~F--~~q~~gs~scL~FHP~~~llAaG~~D 1372 (1387)
T KOG1517|consen 1307 LTALTVHEHAPIIASGSAQ---------LIKIYSLSGEQLNIIKYNPGF--MGQRIGSVSCLAFHPHRLLLAAGSAD 1372 (1387)
T ss_pred ceeeeeccCCCeeeecCcc---------eEEEEecChhhhcccccCccc--ccCcCCCcceeeecchhHhhhhccCC
Confidence 5667888888877776652 399999988766554422100 00000134567777765555555444
No 489
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.06 E-value=5.9e+02 Score=23.69 Aligned_cols=135 Identities=14% Similarity=0.105 Sum_probs=66.5
Q ss_pred CCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC---
Q 039497 447 GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS--- 523 (642)
Q Consensus 447 g~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~--- 523 (642)
|.+++.....++ --|++|.++-+ .+-..++.-.......|++.|.++.... .|+..|.++=
T Consensus 100 gd~~y~LTw~eg--vaf~~d~~t~~------~lg~~~y~GeGWgLt~d~~~LimsdGsa--------tL~frdP~tfa~~ 163 (262)
T COG3823 100 GDYFYQLTWKEG--VAFKYDADTLE------ELGRFSYEGEGWGLTSDDKNLIMSDGSA--------TLQFRDPKTFAEL 163 (262)
T ss_pred cceEEEEEeccc--eeEEEChHHhh------hhcccccCCcceeeecCCcceEeeCCce--------EEEecCHHHhhhc
Confidence 445555554443 45677766533 3333333333445567787777665443 3666666542
Q ss_pred ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc-------
Q 039497 524 GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT------- 596 (642)
Q Consensus 524 ~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt------- 596 (642)
...+++..+.... ..+.+-| -||...+ .--. ..+|.+++.++|++....
T Consensus 164 ~~v~VT~~g~pv~------~LNELE~-VdG~lyA-NVw~----------------t~~I~rI~p~sGrV~~widlS~L~~ 219 (262)
T COG3823 164 DTVQVTDDGVPVS------KLNELEW-VDGELYA-NVWQ----------------TTRIARIDPDSGRVVAWIDLSGLLK 219 (262)
T ss_pred ceEEEEECCeecc------cccceee-eccEEEE-eeee----------------ecceEEEcCCCCcEEEEEEccCCch
Confidence 1223444332110 2233444 3664322 2111 116666666666543222
Q ss_pred ---CC---CCCCCCcEEecCC-ceEEeecCCC
Q 039497 597 ---WN---GYENGTPAWHPGN-QLDLGKLRLE 621 (642)
Q Consensus 597 ---~~---~~~~~~~~~s~dg-~~~~~~~~~~ 621 (642)
.. ......+++.|++ +++++...-.
T Consensus 220 ~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp 251 (262)
T COG3823 220 ELNLDKSNDNVLNGIAHDPQQDRFLITGKLWP 251 (262)
T ss_pred hcCccccccccccceeecCcCCeEEEecCcCc
Confidence 11 1123567888886 7778876654
No 490
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=24.02 E-value=1.7e+02 Score=18.31 Aligned_cols=25 Identities=16% Similarity=0.412 Sum_probs=15.0
Q ss_pred ccccCCCEEEEEEeccCCCcccccccceEEEEccC
Q 039497 95 RPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKA 129 (642)
Q Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 129 (642)
.|.+.++.|++.... +.||.+++++
T Consensus 16 ~~~v~~g~vyv~~~d----------g~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGD----------GNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-TT----------SEEEEEETT-
T ss_pred CCEEECCEEEEEcCC----------CEEEEEeCCC
Confidence 456678877776653 3799888753
No 491
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=23.79 E-value=1e+03 Score=26.24 Aligned_cols=146 Identities=9% Similarity=-0.014 Sum_probs=76.3
Q ss_pred CCeEEEEeCCCCce---eEEEEECCCCccccceeeCCCCCCcccceeE-ecCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497 447 GKFLVFRSGRSGHK---NLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW-SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG 522 (642)
Q Consensus 447 g~~l~~~~~~~g~~---~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~-spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~ 522 (642)
+..|+.....+|.. .+-.||..+.++ ..+...........- .-+|+ ||........ ...-..+..||..+
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W----~~va~m~~~r~~~gv~~~~g~-iYi~GG~~~~-~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKW----TPVAPMLTRRSGHGVAVLGGK-LYIIGGGDGS-SNCLNSVECYDPET 453 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcc----cccCCCCcceeeeEEEEECCE-EEEEcCcCCC-ccccceEEEEcCCC
Confidence 34565555554433 677899888775 554443332223322 33454 5555443321 11236788999999
Q ss_pred CceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCC
Q 039497 523 SGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602 (642)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~ 602 (642)
+..+.+.+..... ...-.-.-+++ ||+.....+.. ....+..||..+.+.+.++.....-
T Consensus 454 ~~W~~~~~M~~~R--------~~~g~a~~~~~-iYvvGG~~~~~-----------~~~~VE~ydp~~~~W~~v~~m~~~r 513 (571)
T KOG4441|consen 454 NTWTLIAPMNTRR--------SGFGVAVLNGK-IYVVGGFDGTS-----------ALSSVERYDPETNQWTMVAPMTSPR 513 (571)
T ss_pred CceeecCCccccc--------ccceEEEECCE-EEEECCccCCC-----------ccceEEEEcCCCCceeEcccCcccc
Confidence 9988876533221 11223334555 55444322211 1235888999998888776543222
Q ss_pred CCcE-EecCCceEEeec
Q 039497 603 GTPA-WHPGNQLDLGKL 618 (642)
Q Consensus 603 ~~~~-~s~dg~~~~~~~ 618 (642)
.... ..-+++.++...
T Consensus 514 s~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 514 SAVGVVVLGGKLYAVGG 530 (571)
T ss_pred ccccEEEECCEEEEEec
Confidence 2222 334555555443
No 492
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=23.35 E-value=1e+03 Score=26.39 Aligned_cols=43 Identities=14% Similarity=0.072 Sum_probs=25.4
Q ss_pred eeEEEEeCCCCceEEeeecCCCCCCCcccccccceE--EcCCCCEEEEEEec
Q 039497 513 FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVC--FSADGEWLLFTANL 562 (642)
Q Consensus 513 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~S~Dg~~l~~~~~~ 562 (642)
.+|-+||..++..+.-......+ .+.++. ..|||+.|+...-.
T Consensus 51 ~~LtIWD~~~~~lE~~~~f~~~~-------~I~dLDWtst~d~qsiLaVGf~ 95 (631)
T PF12234_consen 51 SELTIWDTRSGVLEYEESFSEDD-------PIRDLDWTSTPDGQSILAVGFP 95 (631)
T ss_pred CEEEEEEcCCcEEEEeeeecCCC-------ceeeceeeecCCCCEEEEEEcC
Confidence 35999999887654322221122 344444 47889888766543
No 493
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=22.28 E-value=7.5e+02 Score=24.27 Aligned_cols=140 Identities=18% Similarity=0.096 Sum_probs=73.0
Q ss_pred ceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEe
Q 039497 375 AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRS 454 (642)
Q Consensus 375 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~ 454 (642)
...+.|++-+..++.... ++.+.+..... ..-+ +.+....++ ...+...|+...--|+|+.
T Consensus 124 ~lslD~~~~~~~i~vs~s-------~G~~~~v~~t~--------~~le---~vq~wk~He-~E~Wta~f~~~~pnlvytG 184 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDS-------RGSISGVYETE--------MVLE---KVQTWKVHE-FEAWTAKFSDKEPNLVYTG 184 (339)
T ss_pred eeEEEeeccCceEEEEcC-------CCcEEEEecce--------eeee---ecccccccc-eeeeeeecccCCCceEEec
Confidence 346788988888665542 44454333221 0000 222333333 4455667776666788887
Q ss_pred CCCCceeEEEEECC-CCccccceee-CCCCCCcccceeEe-cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497 455 GRSGHKNLFVLDAV-NGEFNGDIRQ-LTDGPWIDTMPSWS-PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA 531 (642)
Q Consensus 455 ~~~g~~~l~~~d~~-~g~~~~~~~~-l~~~~~~~~~~~~s-pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 531 (642)
.+++ .|.-||+. .++. +-. ...+...+.++.=| |++.+|+..+-+.. |.++|...-. +++...
T Consensus 185 gDD~--~l~~~D~R~p~~~---i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~--------i~~~DtRnm~-kPl~~~ 250 (339)
T KOG0280|consen 185 GDDG--SLSCWDIRIPKTF---IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC--------IRVLDTRNMG-KPLFKA 250 (339)
T ss_pred CCCc--eEEEEEecCCcce---eeecceeeecceEEEecCCCCCceEEEeccccc--------eeeeehhccc-CccccC
Confidence 6555 67778876 2221 111 11122233344334 35667777766654 8888876322 223333
Q ss_pred CCCCCCCcccccccceEEcCCCC
Q 039497 532 GPEGSGDVDRERINHVCFSADGE 554 (642)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~S~Dg~ 554 (642)
...+ .++.+.++|--.
T Consensus 251 ~v~G-------GVWRi~~~p~~~ 266 (339)
T KOG0280|consen 251 KVGG-------GVWRIKHHPEIF 266 (339)
T ss_pred cccc-------ceEEEEecchhh
Confidence 3344 566777777443
No 494
>PHA02790 Kelch-like protein; Provisional
Probab=22.00 E-value=9.8e+02 Score=25.52 Aligned_cols=76 Identities=8% Similarity=-0.056 Sum_probs=42.7
Q ss_pred CCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccce-eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC
Q 039497 445 PDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP-SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS 523 (642)
Q Consensus 445 pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~-~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~ 523 (642)
-+| .|+.....++...+..++..+++. ..+...+.....+ .-.-+| .||..+.... ....+..+|..+.
T Consensus 317 ~~~-~iYviGG~~~~~sve~ydp~~n~W----~~~~~l~~~r~~~~~~~~~g-~IYviGG~~~----~~~~ve~ydp~~~ 386 (480)
T PHA02790 317 ANN-KLYVVGGLPNPTSVERWFHGDAAW----VNMPSLLKPRCNPAVASINN-VIYVIGGHSE----TDTTTEYLLPNHD 386 (480)
T ss_pred ECC-EEEEECCcCCCCceEEEECCCCeE----EECCCCCCCCcccEEEEECC-EEEEecCcCC----CCccEEEEeCCCC
Confidence 344 566555443345688899887775 5655544332222 223355 4555544322 2245778899888
Q ss_pred ceEEeee
Q 039497 524 GLRRIHV 530 (642)
Q Consensus 524 ~~~~l~~ 530 (642)
..+.+..
T Consensus 387 ~W~~~~~ 393 (480)
T PHA02790 387 QWQFGPS 393 (480)
T ss_pred EEEeCCC
Confidence 7776543
No 495
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=21.42 E-value=1.1e+03 Score=26.01 Aligned_cols=73 Identities=16% Similarity=0.290 Sum_probs=46.0
Q ss_pred EECCCCCeEEEEeCCCCc--eeEEEEECCCCccccceeeCCCCCCcccceeEec-CCCEEEEEecCCCCCCCCceeEEEE
Q 039497 442 SCSPDGKFLVFRSGRSGH--KNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP-KGDLIAFSSNRHNPDNVEAFSLYVI 518 (642)
Q Consensus 442 ~~SpDg~~l~~~~~~~g~--~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~l~~~ 518 (642)
..|||-++|+++-...+. ..+ +.++...+. . -+.....+...+|.. ||.-|.+.....+. ....||.-
T Consensus 144 ~~spD~~~ia~~~~~~~~e~~~~-v~~~~~~~~----~-~~~~~~g~~y~~w~~~dg~~l~~~t~~~~~---r~hkvy~h 214 (712)
T KOG2237|consen 144 ESSPDHKYIAYTKDTEGKELFTV-VIDVKFSGP----V-WTHDGKGVSYLAWAKQDGEDLLYGTEDENN---RPHKVYYH 214 (712)
T ss_pred ccCCCceEEEEEEcCCCCcccee-eeeeccCCc----e-eeccCCceEeeeecccCCceeeeeeecccc---CcceEEEE
Confidence 468999999998765442 233 555555442 1 122233456678877 88877777665532 66789988
Q ss_pred eCCCC
Q 039497 519 KPDGS 523 (642)
Q Consensus 519 d~~~~ 523 (642)
.+.+.
T Consensus 215 ~~Gtd 219 (712)
T KOG2237|consen 215 TLGTD 219 (712)
T ss_pred ecccC
Confidence 88665
Done!